RSAT - consensus

Matrix-based motif discovery using CONSENSUS
Extract shared motifs from a set of unaligned sequences
Program developed by Jerry Hertz. Web interface by Jacques van Helden.
The stand-alone version of consensus is available at http://ural.wustl.edu/software.html


Sequence       Format Paste your sequence in the box below

Or select a file to upload (.gz compressed files supported)


Mask 
  seed with first sequence
Complement strand
Matrix length   Assume that the pattern is symmetrical
Expected number of matches   at least one match within each sequence
Number of matrices to save
Alphabet
use the designated prior frequencies
Output 
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