-- dump date 20111121_010023 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001219876.1 148243636 5158917 155..2215 1 NC_009467.1 hypothetical protein 2215 5158917 Acry_3105 Acidiphilium cryptum JF-5 hypothetical protein YP_001219876.1 155 D 349163 CDS YP_001219877.1 148243637 5158911 2212..2889 1 NC_009467.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 2889 5158911 Acry_3106 Acidiphilium cryptum JF-5 two component heavy metal response transcriptional regulator YP_001219877.1 2212 D 349163 CDS YP_001219878.1 148243638 5158981 2918..4261 1 NC_009467.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 4261 5158981 Acry_3107 Acidiphilium cryptum JF-5 heavy metal sensor signal transduction histidine kinase YP_001219878.1 2918 D 349163 CDS YP_001219879.1 148243639 5158975 4361..5737 1 NC_009467.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 5737 5158975 Acry_3108 Acidiphilium cryptum JF-5 outer membrane efflux protein YP_001219879.1 4361 D 349163 CDS YP_001219880.1 148243640 5159026 5734..6660 1 NC_009467.1 hypothetical protein 6660 5159026 Acry_3109 Acidiphilium cryptum JF-5 hypothetical protein YP_001219880.1 5734 D 349163 CDS YP_001219881.1 148243641 5159078 6670..9771 1 NC_009467.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 9771 5159078 Acry_3110 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001219881.1 6670 D 349163 CDS YP_001219882.1 148243642 5159029 9868..10911 1 NC_009467.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 10911 5159029 Acry_3111 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219882.1 9868 D 349163 CDS YP_001219883.1 148243643 5159010 complement(11140..11562) 1 NC_009467.1 hypothetical protein 11562 5159010 Acry_3112 Acidiphilium cryptum JF-5 hypothetical protein YP_001219883.1 11140 R 349163 CDS YP_001219884.1 148243644 5159064 complement(11943..12653) 1 NC_009467.1 transposase 12653 5159064 Acry_3113 Acidiphilium cryptum JF-5 transposase YP_001219884.1 11943 R 349163 CDS YP_001219885.1 148243645 5159079 12788..13297 1 NC_009467.1 transposase 13297 5159079 Acry_3114 Acidiphilium cryptum JF-5 transposase YP_001219885.1 12788 D 349163 CDS YP_001219886.1 148243646 5159074 13423..13941 1 NC_009467.1 hypothetical protein 13941 5159074 Acry_3115 Acidiphilium cryptum JF-5 hypothetical protein YP_001219886.1 13423 D 349163 CDS YP_001219887.1 148243647 5158952 complement(14156..15196) 1 NC_009467.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 15196 5158952 Acry_3116 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219887.1 14156 R 349163 CDS YP_001219888.1 148243648 5159097 complement(15617..16633) 1 NC_009467.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 16633 5159097 Acry_3118 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219888.1 15617 R 349163 CDS YP_001219889.1 148243649 5158976 16732..16851 1 NC_009467.1 hypothetical protein 16851 5158976 Acry_3119 Acidiphilium cryptum JF-5 hypothetical protein YP_001219889.1 16732 D 349163 CDS YP_001219890.1 148243650 5158922 18245..18490 1 NC_009467.1 hypothetical protein 18490 5158922 Acry_3121 Acidiphilium cryptum JF-5 hypothetical protein YP_001219890.1 18245 D 349163 CDS YP_001219891.1 148243651 5159095 complement(18463..18711) 1 NC_009467.1 hypothetical protein 18711 5159095 Acry_3122 Acidiphilium cryptum JF-5 hypothetical protein YP_001219891.1 18463 R 349163 CDS YP_001219892.1 148243652 5159094 complement(18695..20044) 1 NC_009467.1 PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 20044 5159094 Acry_3123 Acidiphilium cryptum JF-5 Na+/H+ antiporter NhaA YP_001219892.1 18695 R 349163 CDS YP_001219893.1 148243653 5159096 22309..22620 1 NC_009467.1 hypothetical protein 22620 5159096 Acry_3124 Acidiphilium cryptum JF-5 hypothetical protein YP_001219893.1 22309 D 349163 CDS YP_001219894.1 148243654 5159069 complement(22631..23713) 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 23713 5159069 Acry_3125 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219894.1 22631 R 349163 CDS YP_001219895.1 148243655 5159013 complement(23752..24960) 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 24960 5159013 Acry_3126 Acidiphilium cryptum JF-5 transposase, mutator type YP_001219895.1 23752 R 349163 CDS YP_001219896.1 148243656 5159009 complement(25032..25379) 1 NC_009467.1 hypothetical protein 25379 5159009 Acry_3127 Acidiphilium cryptum JF-5 hypothetical protein YP_001219896.1 25032 R 349163 CDS YP_001219897.1 148243657 5159025 complement(25666..26469) 1 NC_009467.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 26469 5159025 Acry_3128 Acidiphilium cryptum JF-5 glyoxalase/bleomycin resistance protein/dioxygenase YP_001219897.1 25666 R 349163 CDS YP_001219898.1 148243658 5159070 complement(26466..26924) 1 NC_009467.1 hypothetical protein 26924 5159070 Acry_3129 Acidiphilium cryptum JF-5 hypothetical protein YP_001219898.1 26466 R 349163 CDS YP_001219899.1 148243659 5159071 complement(26921..27385) 1 NC_009467.1 PFAM: DoxX family protein; DoxX family protein 27385 5159071 Acry_3130 Acidiphilium cryptum JF-5 DoxX family protein YP_001219899.1 26921 R 349163 CDS YP_001219900.1 148243660 5159006 complement(27401..27583) 1 NC_009467.1 hypothetical protein 27583 5159006 Acry_3131 Acidiphilium cryptum JF-5 hypothetical protein YP_001219900.1 27401 R 349163 CDS YP_001219901.1 148243661 5159068 complement(27999..29513) 1 NC_009467.1 Enables the enzymatic reduction of mercuric ions to elemental mercury; mercuric reductase 29513 5159068 Acry_3132 Acidiphilium cryptum JF-5 mercuric reductase YP_001219901.1 27999 R 349163 CDS YP_001219902.1 148243662 5159018 complement(29516..30799) 1 NC_009467.1 hypothetical protein 30799 5159018 Acry_3133 Acidiphilium cryptum JF-5 hypothetical protein YP_001219902.1 29516 R 349163 CDS YP_001219903.1 148243663 5159080 complement(30805..32238) 1 NC_009467.1 PFAM: glycoside hydrolase, family 39; glycoside hydrolase family protein 32238 5159080 Acry_3134 Acidiphilium cryptum JF-5 glycoside hydrolase family protein YP_001219903.1 30805 R 349163 CDS YP_001219904.1 148243664 5159081 complement(32235..33797) 1 NC_009467.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 33797 5159081 Acry_3135 Acidiphilium cryptum JF-5 glucose-methanol-choline oxidoreductase YP_001219904.1 32235 R 349163 CDS YP_001219905.1 148243665 5159076 complement(33803..34612) 1 NC_009467.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 34612 5159076 Acry_3136 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001219905.1 33803 R 349163 CDS YP_001219906.1 148243666 5159077 35025..35339 1 NC_009467.1 hypothetical protein 35339 5159077 Acry_3137 Acidiphilium cryptum JF-5 hypothetical protein YP_001219906.1 35025 D 349163 CDS YP_001219907.1 148243667 5159022 complement(35500..35841) 1 NC_009467.1 hypothetical protein 35841 5159022 Acry_3138 Acidiphilium cryptum JF-5 hypothetical protein YP_001219907.1 35500 R 349163 CDS YP_001219908.1 148243668 5159073 35854..44382 1 NC_009467.1 PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; glycosyltransferase 36 44382 5159073 Acry_3139 Acidiphilium cryptum JF-5 glycosyltransferase 36 YP_001219908.1 35854 D 349163 CDS YP_001219909.1 148243669 5159008 complement(44516..45322) 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 45322 5159008 Acry_3140 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219909.1 44516 R 349163 CDS YP_001219910.1 148243670 5159082 complement(45389..45715) 1 NC_009467.1 hypothetical protein 45715 5159082 Acry_3141 Acidiphilium cryptum JF-5 hypothetical protein YP_001219910.1 45389 R 349163 CDS YP_001219911.1 148243671 5159056 complement(46128..47306) 1 NC_009467.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 47306 5159056 Acry_3143 Acidiphilium cryptum JF-5 cyclopropane-fatty-acyl-phospholipid synthase YP_001219911.1 46128 R 349163 CDS YP_001219912.1 148243672 5159061 complement(48369..50351) 1 NC_009467.1 PFAM: protein of unknown function UPF0118; hypothetical protein 50351 5159061 Acry_3145 Acidiphilium cryptum JF-5 hypothetical protein YP_001219912.1 48369 R 349163 CDS YP_001219913.1 148243673 5159072 complement(50396..51322) 1 NC_009467.1 TIGRFAM: esterase, PHB depolymerase family; PHB depolymerase family esterase 51322 5159072 Acry_3146 Acidiphilium cryptum JF-5 PHB depolymerase family esterase YP_001219913.1 50396 R 349163 CDS YP_001219914.1 148243674 5158984 complement(51819..51989) 1 NC_009467.1 PFAM: CsbD family protein; CsbD family protein 51989 5158984 Acry_3147 Acidiphilium cryptum JF-5 CsbD family protein YP_001219914.1 51819 R 349163 CDS YP_001219915.1 148243675 5159048 complement(52424..52981) 1 NC_009467.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 52981 5159048 Acry_3148 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001219915.1 52424 R 349163 CDS YP_001219916.1 148243676 5159062 53133..53585 1 NC_009467.1 hypothetical protein 53585 5159062 Acry_3149 Acidiphilium cryptum JF-5 hypothetical protein YP_001219916.1 53133 D 349163 CDS YP_001219917.1 148243677 5159023 complement(53739..54068) 1 NC_009467.1 hypothetical protein 54068 5159023 Acry_3150 Acidiphilium cryptum JF-5 hypothetical protein YP_001219917.1 53739 R 349163 CDS YP_001219918.1 148243678 5159005 54440..54811 1 NC_009467.1 hypothetical protein 54811 5159005 Acry_3151 Acidiphilium cryptum JF-5 hypothetical protein YP_001219918.1 54440 D 349163 CDS YP_001219919.1 148243679 5159067 complement(55010..55282) 1 NC_009467.1 hypothetical protein 55282 5159067 Acry_3152 Acidiphilium cryptum JF-5 hypothetical protein YP_001219919.1 55010 R 349163 CDS YP_001219920.1 148243680 5159012 55649..55996 1 NC_009467.1 hypothetical protein 55996 5159012 Acry_3153 Acidiphilium cryptum JF-5 hypothetical protein YP_001219920.1 55649 D 349163 CDS YP_001219921.1 148243681 5159017 56015..57064 1 NC_009467.1 hypothetical protein 57064 5159017 Acry_3154 Acidiphilium cryptum JF-5 hypothetical protein YP_001219921.1 56015 D 349163 CDS YP_001219922.1 148243682 5159019 57098..58138 1 NC_009467.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 58138 5159019 Acry_3155 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219922.1 57098 D 349163 CDS YP_001219923.1 148243683 5159027 58472..59488 1 NC_009467.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 59488 5159027 Acry_3156 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219923.1 58472 D 349163 CDS YP_001219924.1 148243684 5158983 complement(60649..61905) 1 NC_009467.1 FOG: Transposase-like protein; transposase 61905 5158983 Acry_3158 Acidiphilium cryptum JF-5 transposase YP_001219924.1 60649 R 349163 CDS YP_001219925.1 148243685 5159075 62033..62305 1 NC_009467.1 hypothetical protein 62305 5159075 Acry_3159 Acidiphilium cryptum JF-5 hypothetical protein YP_001219925.1 62033 D 349163 CDS YP_001219926.1 148243686 5159085 64741..65721 1 NC_009467.1 PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 65721 5159085 Acry_3160 Acidiphilium cryptum JF-5 Na+/H+ antiporter NhaA YP_001219926.1 64741 D 349163 CDS YP_001219927.1 148243687 5159087 65815..67458 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 67458 5159087 Acry_3161 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219927.1 65815 D 349163 CDS YP_001219928.1 148243688 5159031 67582..68019 1 NC_009467.1 PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 68019 5159031 Acry_3162 Acidiphilium cryptum JF-5 Na+/H+ antiporter NhaA YP_001219928.1 67582 D 349163 CDS YP_001219929.1 148243689 5159032 68003..68251 1 NC_009467.1 hypothetical protein 68251 5159032 Acry_3163 Acidiphilium cryptum JF-5 hypothetical protein YP_001219929.1 68003 D 349163 CDS YP_001219930.1 148243690 5159086 complement(68806..69588) 1 NC_009467.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 69588 5159086 Acry_3164 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001219930.1 68806 R 349163 CDS YP_001219931.1 148243691 5159034 complement(70523..71398) 1 NC_009467.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 71398 5159034 Acry_3166 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001219931.1 70523 R 349163 CDS YP_001219932.1 148243692 5159084 complement(71395..72924) 1 NC_009467.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 72924 5159084 Acry_3167 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001219932.1 71395 R 349163 CDS YP_001219933.1 148243693 5159030 complement(74089..75303) 1 NC_009467.1 hypothetical protein 75303 5159030 Acry_3168 Acidiphilium cryptum JF-5 hypothetical protein YP_001219933.1 74089 R 349163 CDS YP_001219934.1 148243694 5159088 75372..79709 1 NC_009467.1 PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; regulatory protein, LuxR; response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Sigma-70, region 4 type 2; PAS fold-4 domain protein; signal transduction histidine kinase with CheB and CheR activity 79709 5159088 Acry_3169 Acidiphilium cryptum JF-5 signal transduction histidine kinase with CheB and CheR activity YP_001219934.1 75372 D 349163 CDS YP_001219935.1 148243695 5159035 80154..81200 1 NC_009467.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 81200 5159035 Acry_3170 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219935.1 80154 D 349163 CDS YP_001219936.1 148243696 5159036 complement(81170..82048) 1 NC_009467.1 PFAM: regulatory protein GntR, HTH; regulatory protein GntR, HTH 82048 5159036 Acry_3171 Acidiphilium cryptum JF-5 regulatory protein GntR, HTH YP_001219936.1 81170 R 349163 CDS YP_001219937.1 148243697 5159028 82617..83825 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 83825 5159028 Acry_3172 Acidiphilium cryptum JF-5 transposase, mutator type YP_001219937.1 82617 D 349163 CDS YP_001219938.1 148243698 5159038 complement(84454..85164) 1 NC_009467.1 transposase 85164 5159038 Acry_3173 Acidiphilium cryptum JF-5 transposase YP_001219938.1 84454 R 349163 CDS YP_001219939.1 148243699 5159090 complement(86018..86296) 1 NC_009467.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 86296 5159090 Acry_3174 Acidiphilium cryptum JF-5 plasmid stabilization system protein YP_001219939.1 86018 R 349163 CDS YP_001219940.1 148243700 5159091 86302..86592 1 NC_009467.1 hypothetical protein 86592 5159091 Acry_3175 Acidiphilium cryptum JF-5 hypothetical protein YP_001219940.1 86302 D 349163 CDS YP_001219941.1 148243701 5159092 86592..86864 1 NC_009467.1 hypothetical protein 86864 5159092 Acry_3176 Acidiphilium cryptum JF-5 hypothetical protein YP_001219941.1 86592 D 349163 CDS YP_001219942.1 148243702 5159093 86998..88122 1 NC_009467.1 hypothetical protein 88122 5159093 Acry_3177 Acidiphilium cryptum JF-5 hypothetical protein YP_001219942.1 86998 D 349163 CDS YP_001219943.1 148243703 5159020 88223..88492 1 NC_009467.1 PFAM: WGR domain protein; WGR domain-containing protein 88492 5159020 Acry_3178 Acidiphilium cryptum JF-5 WGR domain-containing protein YP_001219943.1 88223 D 349163 CDS YP_001219944.1 148243704 5159089 88768..91056 1 NC_009467.1 hypothetical protein 91056 5159089 Acry_3179 Acidiphilium cryptum JF-5 hypothetical protein YP_001219944.1 88768 D 349163 CDS YP_001219945.1 148243705 5159033 complement(91393..91818) 1 NC_009467.1 PFAM: PilT protein domain protein; PilT domain-containing protein 91818 5159033 Acry_3180 Acidiphilium cryptum JF-5 PilT domain-containing protein YP_001219945.1 91393 R 349163 CDS YP_001219946.1 148243706 5159066 complement(91815..92090) 1 NC_009467.1 hypothetical protein 92090 5159066 Acry_3181 Acidiphilium cryptum JF-5 hypothetical protein YP_001219946.1 91815 R 349163 CDS YP_001219947.1 148243707 5159024 complement(93167..93382) 1 NC_009467.1 hypothetical protein 93382 5159024 Acry_3183 Acidiphilium cryptum JF-5 hypothetical protein YP_001219947.1 93167 R 349163 CDS YP_001219948.1 148243708 5159007 93525..94280 1 NC_009467.1 hypothetical protein 94280 5159007 Acry_3184 Acidiphilium cryptum JF-5 hypothetical protein YP_001219948.1 93525 D 349163 CDS YP_001219949.1 148243709 5159021 complement(94196..95404) 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 95404 5159021 Acry_3185 Acidiphilium cryptum JF-5 transposase, mutator type YP_001219949.1 94196 R 349163 CDS YP_001219950.1 148243710 5158986 complement(95519..95839) 1 NC_009467.1 hypothetical protein 95839 5158986 Acry_3186 Acidiphilium cryptum JF-5 hypothetical protein YP_001219950.1 95519 R 349163 CDS YP_001219951.1 148243711 5159063 complement(96132..96545) 1 NC_009467.1 hypothetical protein 96545 5159063 Acry_3187 Acidiphilium cryptum JF-5 hypothetical protein YP_001219951.1 96132 R 349163 CDS YP_001219952.1 148243712 5159065 96950..97573 1 NC_009467.1 hypothetical protein 97573 5159065 Acry_3188 Acidiphilium cryptum JF-5 hypothetical protein YP_001219952.1 96950 D 349163 CDS YP_001219953.1 148243713 5159016 complement(97387..98373) 1 NC_009467.1 hypothetical protein 98373 5159016 Acry_3189 Acidiphilium cryptum JF-5 hypothetical protein YP_001219953.1 97387 R 349163 CDS YP_001219954.1 148243714 5159037 98745..99074 1 NC_009467.1 hypothetical protein 99074 5159037 Acry_3190 Acidiphilium cryptum JF-5 hypothetical protein YP_001219954.1 98745 D 349163 CDS YP_001219955.1 148243715 5158937 99126..99464 1 NC_009467.1 hypothetical protein 99464 5158937 Acry_3191 Acidiphilium cryptum JF-5 hypothetical protein YP_001219955.1 99126 D 349163 CDS YP_001219956.1 148243716 5158930 complement(99418..99723) 1 NC_009467.1 hypothetical protein 99723 5158930 Acry_3192 Acidiphilium cryptum JF-5 hypothetical protein YP_001219956.1 99418 R 349163 CDS YP_001219957.1 148243717 5158927 99832..100389 1 NC_009467.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 100389 5158927 Acry_3193 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001219957.1 99832 D 349163 CDS YP_001219958.1 148243718 5158950 100689..100994 1 NC_009467.1 PFAM: CsbD family protein; CsbD family protein 100994 5158950 Acry_3194 Acidiphilium cryptum JF-5 CsbD family protein YP_001219958.1 100689 D 349163 CDS YP_001219959.1 148243719 5158947 101491..102417 1 NC_009467.1 TIGRFAM: esterase, PHB depolymerase family; PHB depolymerase family esterase 102417 5158947 Acry_3195 Acidiphilium cryptum JF-5 PHB depolymerase family esterase YP_001219959.1 101491 D 349163 CDS YP_001219960.1 148243720 5158965 102462..104444 1 NC_009467.1 PFAM: protein of unknown function UPF0118; hypothetical protein 104444 5158965 Acry_3196 Acidiphilium cryptum JF-5 hypothetical protein YP_001219960.1 102462 D 349163 CDS YP_001219961.1 148243721 5158944 complement(104657..105187) 1 NC_009467.1 response regulator receiver protein 105187 5158944 Acry_3197 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001219961.1 104657 R 349163 CDS YP_001219962.1 148243722 5158929 105560..105916 1 NC_009467.1 hypothetical protein 105916 5158929 Acry_3198 Acidiphilium cryptum JF-5 hypothetical protein YP_001219962.1 105560 D 349163 CDS YP_001219963.1 148243723 5158945 complement(105997..106335) 1 NC_009467.1 hypothetical protein 106335 5158945 Acry_3199 Acidiphilium cryptum JF-5 hypothetical protein YP_001219963.1 105997 R 349163 CDS YP_001219964.1 148243724 5158946 106952..107788 1 NC_009467.1 PFAM: band 7 protein; band 7 protein 107788 5158946 Acry_3200 Acidiphilium cryptum JF-5 band 7 protein YP_001219964.1 106952 D 349163 CDS YP_001219965.1 148243725 5158971 108038..109294 1 NC_009467.1 FOG: Transposase-like protein; transposase 109294 5158971 Acry_3201 Acidiphilium cryptum JF-5 transposase YP_001219965.1 108038 D 349163 CDS YP_001219966.1 148243726 5158921 109482..110726 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 110726 5158921 Acry_3202 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219966.1 109482 D 349163 CDS YP_001219967.1 148243727 5159051 111082..111759 1 NC_009467.1 hypothetical protein 111759 5159051 Acry_3203 Acidiphilium cryptum JF-5 hypothetical protein YP_001219967.1 111082 D 349163 CDS YP_001219968.1 148243728 5158957 111777..112193 1 NC_009467.1 hypothetical protein 112193 5158957 Acry_3204 Acidiphilium cryptum JF-5 hypothetical protein YP_001219968.1 111777 D 349163 CDS YP_001219969.1 148243729 5158943 112483..114747 1 NC_009467.1 hypothetical protein 114747 5158943 Acry_3205 Acidiphilium cryptum JF-5 hypothetical protein YP_001219969.1 112483 D 349163 CDS YP_001219970.1 148243730 5158916 114877..117558 1 NC_009467.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; plasma-membrane proton-efflux P-type ATPase 117558 5158916 Acry_3206 Acidiphilium cryptum JF-5 plasma-membrane proton-efflux P-type ATPase YP_001219970.1 114877 D 349163 CDS YP_001219971.1 148243731 5158934 complement(117812..118915) 1 NC_009467.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 118915 5158934 Acry_3207 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001219971.1 117812 R 349163 CDS YP_001219972.1 148243732 5158931 complement(118968..119774) 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 119774 5158931 Acry_3208 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219972.1 118968 R 349163 CDS YP_001219973.1 148243733 5158935 complement(120083..120739) 1 NC_009467.1 transposase 120739 5158935 Acry_3209 Acidiphilium cryptum JF-5 transposase YP_001219973.1 120083 R 349163 CDS YP_001219974.1 148243734 5158926 121146..121988 1 NC_009467.1 hypothetical protein 121988 5158926 Acry_3211 Acidiphilium cryptum JF-5 hypothetical protein YP_001219974.1 121146 D 349163 CDS YP_001219975.1 148243735 5159045 complement(121948..123171) 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 123171 5159045 Acry_3212 Acidiphilium cryptum JF-5 transposase, mutator type YP_001219975.1 121948 R 349163 CDS YP_001219976.1 148243736 5158923 123296..123841 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 123841 5158923 Acry_3213 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219976.1 123296 D 349163 CDS YP_001219977.1 148243737 5159041 complement(123843..124535) 1 NC_009467.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 124535 5159041 Acry_3214 Acidiphilium cryptum JF-5 CRP/FNR family transcriptional regulator YP_001219977.1 123843 R 349163 CDS YP_001219978.1 148243738 5158932 127229..128599 1 NC_009467.1 PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 128599 5158932 Acry_3215 Acidiphilium cryptum JF-5 Na+/H+ antiporter NhaA YP_001219978.1 127229 D 349163 CDS YP_001219979.1 148243739 5158955 129492..130319 1 NC_009467.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; methyltransferase type 11 130319 5158955 Acry_3216 Acidiphilium cryptum JF-5 methyltransferase type 11 YP_001219979.1 129492 D 349163 CDS YP_001219980.1 148243740 5158949 complement(130377..130631) 1 NC_009467.1 hypothetical protein 130631 5158949 Acry_3217 Acidiphilium cryptum JF-5 hypothetical protein YP_001219980.1 130377 R 349163 CDS YP_001219981.1 148243741 5158959 complement(131326..131589) 1 NC_009467.1 hypothetical protein 131589 5158959 Acry_3218 Acidiphilium cryptum JF-5 hypothetical protein YP_001219981.1 131326 R 349163 CDS YP_001219982.1 148243742 5158938 131729..132937 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 132937 5158938 Acry_3219 Acidiphilium cryptum JF-5 transposase, mutator type YP_001219982.1 131729 D 349163 CDS YP_001219983.1 148243743 5158918 133465..134994 1 NC_009467.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 134994 5158918 Acry_3221 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001219983.1 133465 D 349163 CDS YP_001219984.1 148243744 5158962 134991..135866 1 NC_009467.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 135866 5158962 Acry_3222 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001219984.1 134991 D 349163 CDS YP_001219985.1 148243745 5158968 complement(135929..137575) 1 NC_009467.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 137575 5158968 Acry_3223 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001219985.1 135929 R 349163 CDS YP_001219986.1 148243746 5158940 137757..138104 1 NC_009467.1 hypothetical protein 138104 5158940 Acry_3224 Acidiphilium cryptum JF-5 hypothetical protein YP_001219986.1 137757 D 349163 CDS YP_001219987.1 148243747 5158987 complement(138372..139010) 1 NC_009467.1 hypothetical protein 139010 5158987 Acry_3225 Acidiphilium cryptum JF-5 hypothetical protein YP_001219987.1 138372 R 349163 CDS YP_001219988.1 148243748 5159059 complement(139096..144141) 1 NC_009467.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 144141 5159059 Acry_3226 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001219988.1 139096 R 349163 CDS YP_001219989.1 148243749 5158924 complement(144189..144527) 1 NC_009467.1 hypothetical protein 144527 5158924 Acry_3227 Acidiphilium cryptum JF-5 hypothetical protein YP_001219989.1 144189 R 349163 CDS YP_001219990.1 148243750 5158978 144665..145345 1 NC_009467.1 hypothetical protein 145345 5158978 Acry_3228 Acidiphilium cryptum JF-5 hypothetical protein YP_001219990.1 144665 D 349163 CDS YP_001219991.1 148243751 5158920 145355..146245 1 NC_009467.1 hypothetical protein 146245 5158920 Acry_3229 Acidiphilium cryptum JF-5 hypothetical protein YP_001219991.1 145355 D 349163 CDS YP_001219992.1 148243752 5159039 146461..146946 1 NC_009467.1 hypothetical protein 146946 5159039 Acry_3230 Acidiphilium cryptum JF-5 hypothetical protein YP_001219992.1 146461 D 349163 CDS YP_001219993.1 148243753 5158969 146951..147355 1 NC_009467.1 hypothetical protein 147355 5158969 Acry_3231 Acidiphilium cryptum JF-5 hypothetical protein YP_001219993.1 146951 D 349163 CDS YP_001219994.1 148243754 5159042 complement(147377..147694) 1 NC_009467.1 hypothetical protein 147694 5159042 Acry_3232 Acidiphilium cryptum JF-5 hypothetical protein YP_001219994.1 147377 R 349163 CDS YP_001219995.1 148243755 5158915 complement(147823..148968) 1 NC_009467.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; ATPase, P-type (transporting), HAD superfamily, subfamily IC 148968 5158915 Acry_3233 Acidiphilium cryptum JF-5 ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_001219995.1 147823 R 349163 CDS YP_001219996.1 148243756 5158964 complement(149080..149886) 1 NC_009467.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 149886 5158964 Acry_3234 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001219996.1 149080 R 349163 CDS YP_001219997.1 148243757 5158951 complement(149876..151402) 1 NC_009467.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 151402 5158951 Acry_3235 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001219997.1 149876 R 349163 CDS YP_001219998.1 148243758 5158989 complement(151500..152534) 1 NC_009467.1 PFAM: Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; E1-E2 ATPase-associated domain-containing protein 152534 5158989 Acry_3236 Acidiphilium cryptum JF-5 E1-E2 ATPase-associated domain-containing protein YP_001219998.1 151500 R 349163 CDS YP_001219999.1 148243759 5159054 152615..153028 1 NC_009467.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 153028 5159054 Acry_3237 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001219999.1 152615 D 349163 CDS YP_001220000.1 148243760 5158973 complement(153038..154276) 1 NC_009467.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 154276 5158973 Acry_3238 Acidiphilium cryptum JF-5 major facilitator transporter YP_001220000.1 153038 R 349163 CDS YP_001220001.1 148243761 5158941 complement(154282..155013) 1 NC_009467.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 155013 5158941 Acry_3239 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001220001.1 154282 R 349163 CDS YP_001220002.1 148243762 5158948 155099..155764 1 NC_009467.1 PFAM: Rhodanese domain protein; regulatory protein, ArsR; regulatory protein, ArsR 155764 5158948 Acry_3240 Acidiphilium cryptum JF-5 regulatory protein, ArsR YP_001220002.1 155099 D 349163 CDS YP_001220003.1 148243763 5159044 complement(155937..156224) 1 NC_009467.1 TIGRFAM: addiction module antidote protein, HigA family; XRE family plasmid maintenance system antidote protein 156224 5159044 Acry_3241 Acidiphilium cryptum JF-5 XRE family plasmid maintenance system antidote protein YP_001220003.1 155937 R 349163 CDS YP_001220004.1 148243764 5158988 complement(156236..156514) 1 NC_009467.1 PFAM: plasmid maintenance system killer; plasmid maintenance system killer 156514 5158988 Acry_3242 Acidiphilium cryptum JF-5 plasmid maintenance system killer YP_001220004.1 156236 R 349163 CDS YP_001220005.1 148243765 5158961 complement(156837..157073) 1 NC_009467.1 PFAM: phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein 157073 5158961 Acry_3244 Acidiphilium cryptum JF-5 phage integrase domain/SAM domain-containing protein YP_001220005.1 156837 R 349163 CDS YP_001220006.1 148243766 5158970 159794..161017 1 NC_009467.1 PFAM: transposase, mutator type; transposase, mutator type 161017 5158970 Acry_3247 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220006.1 159794 D 349163 CDS YP_001220007.1 148243767 5158953 complement(161021..161698) 1 NC_009467.1 transposase 161698 5158953 Acry_3248 Acidiphilium cryptum JF-5 transposase YP_001220007.1 161021 R 349163 CDS YP_001220008.1 148243768 5159057 161920..162135 1 NC_009467.1 hypothetical protein 162135 5159057 Acry_3249 Acidiphilium cryptum JF-5 hypothetical protein YP_001220008.1 161920 D 349163 CDS YP_001220009.1 148243769 5158936 162308..162586 1 NC_009467.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 162586 5158936 Acry_3250 Acidiphilium cryptum JF-5 plasmid stabilization system protein YP_001220009.1 162308 D 349163 CDS YP_001220010.1 148243770 5159058 162993..163553 1 NC_009467.1 PFAM: Heme NO binding domain protein; heme NO binding domain-containing protein 163553 5159058 Acry_3251 Acidiphilium cryptum JF-5 heme NO binding domain-containing protein YP_001220010.1 162993 D 349163 CDS YP_001220011.1 148243771 5159060 163559..165421 1 NC_009467.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 165421 5159060 Acry_3252 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001220011.1 163559 D 349163 CDS YP_001220012.1 148243772 5159002 complement(165732..166985) 1 NC_009467.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 166985 5159002 Acry_3253 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001220012.1 165732 R 349163 CDS YP_001220013.1 148243773 5159003 complement(169564..169914) 1 NC_009467.1 PFAM: helix-turn-helix, Fis-type; Resolvase helix-turn-helix domain protein; Fis family transcriptional regulator 169914 5159003 Acry_3256 Acidiphilium cryptum JF-5 Fis family transcriptional regulator YP_001220013.1 169564 R 349163 CDS YP_001220014.1 148243774 5158914 complement(169881..170546) 1 NC_009467.1 PFAM: Rhodanese domain protein; regulatory protein, ArsR; rhodanese domain-containing protein 170546 5158914 Acry_3257 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001220014.1 169881 R 349163 CDS YP_001220015.1 148243775 5158913 170632..171363 1 NC_009467.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 171363 5158913 Acry_3258 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001220015.1 170632 D 349163 CDS YP_001220016.1 148243776 5159053 171369..172604 1 NC_009467.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 172604 5159053 Acry_3259 Acidiphilium cryptum JF-5 major facilitator transporter YP_001220016.1 171369 D 349163 CDS YP_001220017.1 148243777 5158979 173493..173891 1 NC_009467.1 hypothetical protein 173891 5158979 Acry_3260 Acidiphilium cryptum JF-5 hypothetical protein YP_001220017.1 173493 D 349163 CDS YP_001220018.1 148243778 5158994 complement(174594..174902) 1 NC_009467.1 hypothetical protein 174902 5158994 Acry_3261 Acidiphilium cryptum JF-5 hypothetical protein YP_001220018.1 174594 R 349163 CDS YP_001220019.1 148243779 5158963 complement(174947..175102) 1 NC_009467.1 hypothetical protein 175102 5158963 Acry_3262 Acidiphilium cryptum JF-5 hypothetical protein YP_001220019.1 174947 R 349163 CDS YP_001220020.1 148243780 5158933 complement(175195..175518) 1 NC_009467.1 antirestriction protein-like protein 175518 5158933 Acry_3263 Acidiphilium cryptum JF-5 antirestriction protein-like protein YP_001220020.1 175195 R 349163 CDS YP_001220021.1 148243781 5158958 175771..176982 1 NC_009467.1 PFAM: phage integrase family protein; phage integrase family protein 176982 5158958 Acry_3264 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220021.1 175771 D 349163 CDS YP_001220022.1 148243782 5158985 176979..177920 1 NC_009467.1 PFAM: phage integrase family protein; phage integrase family protein 177920 5158985 Acry_3265 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220022.1 176979 D 349163 CDS YP_001220023.1 148243783 5158995 177917..178909 1 NC_009467.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 178909 5158995 Acry_3266 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220023.1 177917 D 349163 CDS YP_001220024.1 148243784 5159049 complement(178677..179702) 1 NC_009467.1 PFAM: domain of unknown function DUF1738; hypothetical protein 179702 5159049 Acry_3267 Acidiphilium cryptum JF-5 hypothetical protein YP_001220024.1 178677 R 349163 CDS YP_001220025.1 148243785 5159055 complement(180289..180699) 1 NC_009467.1 PFAM: PilT protein domain protein; PilT domain-containing protein 180699 5159055 Acry_3268 Acidiphilium cryptum JF-5 PilT domain-containing protein YP_001220025.1 180289 R 349163 CDS YP_001220026.1 148243786 5158982 complement(180696..181016) 1 NC_009467.1 PFAM: Rv0623 family protein transcription factor; transcription factor 181016 5158982 Acry_3269 Acidiphilium cryptum JF-5 transcription factor YP_001220026.1 180696 R 349163 CDS YP_001220027.1 148243787 5158928 complement(181131..181652) 1 NC_009467.1 PFAM: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 181652 5158928 Acry_3270 Acidiphilium cryptum JF-5 GCN5-related N-acetyltransferase YP_001220027.1 181131 R 349163 CDS YP_001220028.1 148243788 5158996 complement(181649..181948) 1 NC_009467.1 hypothetical protein 181948 5158996 Acry_3271 Acidiphilium cryptum JF-5 hypothetical protein YP_001220028.1 181649 R 349163 CDS YP_001220029.1 148243789 5158956 182342..182608 1 NC_009467.1 PFAM: WGR domain protein; WGR domain-containing protein 182608 5158956 Acry_3272 Acidiphilium cryptum JF-5 WGR domain-containing protein YP_001220029.1 182342 D 349163 CDS YP_001220030.1 148243790 5158939 182886..185081 1 NC_009467.1 TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; RecD/TraA family helicase 185081 5158939 Acry_3273 Acidiphilium cryptum JF-5 RecD/TraA family helicase YP_001220030.1 182886 D 349163 CDS YP_001220031.1 148243791 5158925 complement(185171..186562) 1 NC_009467.1 PFAM: replication protein C; replication protein C 186562 5158925 Acry_3274 Acidiphilium cryptum JF-5 replication protein C YP_001220031.1 185171 R 349163 CDS YP_001220032.1 148243792 5159043 complement(186750..187718) 1 NC_009467.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; parB-like partition protein 187718 5159043 Acry_3275 Acidiphilium cryptum JF-5 parB-like partition protein YP_001220032.1 186750 R 349163 CDS YP_001220033.1 148243793 5158942 complement(187721..188953) 1 NC_009467.1 PFAM: regulatory protein, MerR; Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 188953 5158942 Acry_3276 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001220033.1 187721 R 349163 CDS YP_001220034.1 148243794 5159040 complement(190843..191970) 1 NC_009467.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein 191970 5159040 Acry_3277 Acidiphilium cryptum JF-5 phage integrase domain/SAM domain-containing protein YP_001220034.1 190843 R 349163 CDS YP_001220035.1 148243795 5159047 complement(192085..192663) 1 NC_009467.1 hypothetical protein 192663 5159047 Acry_3278 Acidiphilium cryptum JF-5 hypothetical protein YP_001220035.1 192085 R 349163 CDS YP_001220036.1 148243796 5158972 complement(192660..193109) 1 NC_009467.1 TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein 193109 5158972 Acry_3279 Acidiphilium cryptum JF-5 DNA binding domain-containing protein YP_001220036.1 192660 R 349163 CDS YP_001220037.1 148243797 5158912 complement(193143..193394) 1 NC_009467.1 hypothetical protein 193394 5158912 Acry_3280 Acidiphilium cryptum JF-5 hypothetical protein YP_001220037.1 193143 R 349163 CDS YP_001220038.1 148243798 5158960 193781..194983 1 NC_009467.1 hypothetical protein 194983 5158960 Acry_3281 Acidiphilium cryptum JF-5 hypothetical protein YP_001220038.1 193781 D 349163 CDS YP_001220039.1 148243799 5158997 195252..195728 1 NC_009467.1 Beta-lactamase class C and other penicillin binding protein-like protein 195728 5158997 Acry_3282 Acidiphilium cryptum JF-5 Beta-lactamase class C and other penicillin binding protein-like protein YP_001220039.1 195252 D 349163 CDS YP_001220040.1 148243800 5158999 195752..196462 1 NC_009467.1 transposase 196462 5158999 Acry_3283 Acidiphilium cryptum JF-5 transposase YP_001220040.1 195752 D 349163 CDS YP_001220041.1 148243801 5158967 196416..198830 1 NC_009467.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; molybdopterin oxidoreductase 198830 5158967 Acry_3284 Acidiphilium cryptum JF-5 molybdopterin oxidoreductase YP_001220041.1 196416 D 349163 CDS YP_001220042.1 148243802 5158966 198808..199593 1 NC_009467.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 199593 5158966 Acry_3285 Acidiphilium cryptum JF-5 uroporphyrin-III C-methyltransferase YP_001220042.1 198808 D 349163 CDS YP_001220043.1 148243803 5158998 complement(199562..200146) 1 NC_009467.1 siroheme synthase 200146 5158998 Acry_3286 Acidiphilium cryptum JF-5 siroheme synthase YP_001220043.1 199562 R 349163 CDS YP_001220044.1 148243804 5159001 200332..200640 1 NC_009467.1 hypothetical protein 200640 5159001 Acry_3287 Acidiphilium cryptum JF-5 hypothetical protein YP_001220044.1 200332 D 349163 CDS YP_001220045.1 148243805 5159000 202493..202732 1 NC_009467.1 hypothetical protein 202732 5159000 Acry_3290 Acidiphilium cryptum JF-5 hypothetical protein YP_001220045.1 202493 D 349163 CDS YP_001220046.1 148243806 5158991 202859..203581 1 NC_009467.1 hypothetical protein 203581 5158991 Acry_3291 Acidiphilium cryptum JF-5 hypothetical protein YP_001220046.1 202859 D 349163 CDS YP_001220047.1 148243808 5159250 complement(42..3290) 1 NC_009468.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit 3290 5159250 Acry_3292 Acidiphilium cryptum JF-5 DNA polymerase III, alpha subunit YP_001220047.1 42 R 349163 CDS YP_001220048.1 148243809 5159261 complement(3287..4855) 1 NC_009468.1 nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein 4855 5159261 Acry_3293 Acidiphilium cryptum JF-5 nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein YP_001220048.1 3287 R 349163 CDS YP_001220049.1 148243810 5159266 5797..7950 1 NC_009468.1 PFAM: UvrD/REP helicase; UvrD/REP helicase 7950 5159266 Acry_3295 Acidiphilium cryptum JF-5 UvrD/REP helicase YP_001220049.1 5797 D 349163 CDS YP_001220050.1 148243811 5159264 7943..8677 1 NC_009468.1 PFAM: protein of unknown function DUF159; hypothetical protein 8677 5159264 Acry_3296 Acidiphilium cryptum JF-5 hypothetical protein YP_001220050.1 7943 D 349163 CDS YP_001220051.1 148243812 5159256 complement(8578..9501) 1 NC_009468.1 PFAM: putative transposase, IS891/IS1136/IS1341 family; IS891/IS1136/IS1341 family transposase 9501 5159256 Acry_3297 Acidiphilium cryptum JF-5 IS891/IS1136/IS1341 family transposase YP_001220051.1 8578 R 349163 CDS YP_001220052.1 148243813 5159260 9556..11154 1 NC_009468.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 11154 5159260 Acry_3298 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220052.1 9556 D 349163 CDS YP_001220053.1 148243814 5159241 11151..12026 1 NC_009468.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 12026 5159241 Acry_3299 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220053.1 11151 D 349163 CDS YP_001220054.1 148243815 5159255 complement(12089..12448) 1 NC_009468.1 hypothetical protein 12448 5159255 Acry_3300 Acidiphilium cryptum JF-5 hypothetical protein YP_001220054.1 12089 R 349163 CDS YP_001220055.1 148243816 5159262 12472..12888 1 NC_009468.1 PFAM: transposase IS200-family protein; transposase IS200-family protein 12888 5159262 Acry_3301 Acidiphilium cryptum JF-5 transposase IS200-family protein YP_001220055.1 12472 D 349163 CDS YP_001220056.1 148243817 5159253 13271..14263 1 NC_009468.1 hypothetical protein 14263 5159253 Acry_3302 Acidiphilium cryptum JF-5 hypothetical protein YP_001220056.1 13271 D 349163 CDS YP_001220057.1 148243818 5159186 14557..15813 1 NC_009468.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 15813 5159186 Acry_3303 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001220057.1 14557 D 349163 CDS YP_001220058.1 148243819 5159242 15810..16952 1 NC_009468.1 PFAM: protein of unknown function DUF214; hypothetical protein 16952 5159242 Acry_3304 Acidiphilium cryptum JF-5 hypothetical protein YP_001220058.1 15810 D 349163 CDS YP_001220059.1 148243820 5159100 16945..17709 1 NC_009468.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 17709 5159100 Acry_3305 Acidiphilium cryptum JF-5 ABC transporter related YP_001220059.1 16945 D 349163 CDS YP_001220060.1 148243821 5159099 complement(18027..18344) 1 NC_009468.1 hypothetical protein 18344 5159099 Acry_3306 Acidiphilium cryptum JF-5 hypothetical protein YP_001220060.1 18027 R 349163 CDS YP_001220061.1 148243822 5159234 complement(19016..20407) 1 NC_009468.1 PFAM: replication protein C; replication protein C 20407 5159234 Acry_3307 Acidiphilium cryptum JF-5 replication protein C YP_001220061.1 19016 R 349163 CDS YP_001220062.1 148243823 5159156 complement(21035..21919) 1 NC_009468.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 21919 5159156 Acry_3308 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001220062.1 21035 R 349163 CDS YP_001220063.1 148243824 5159245 22010..23197 1 NC_009468.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; major facilitator transporter 23197 5159245 Acry_3309 Acidiphilium cryptum JF-5 major facilitator transporter YP_001220063.1 22010 D 349163 CDS YP_001220064.1 148243825 5159239 23194..24246 1 NC_009468.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase, NPD 24246 5159239 Acry_3310 Acidiphilium cryptum JF-5 2-nitropropane dioxygenase, NPD YP_001220064.1 23194 D 349163 CDS YP_001220065.1 148243826 5159232 complement(24631..25020) 1 NC_009468.1 hypothetical protein 25020 5159232 Acry_3311 Acidiphilium cryptum JF-5 hypothetical protein YP_001220065.1 24631 R 349163 CDS YP_001220066.1 148243827 5159200 complement(25326..25595) 1 NC_009468.1 hypothetical protein 25595 5159200 Acry_3312 Acidiphilium cryptum JF-5 hypothetical protein YP_001220066.1 25326 R 349163 CDS YP_001220067.1 148243828 5159240 25710..26090 1 NC_009468.1 hypothetical protein 26090 5159240 Acry_3313 Acidiphilium cryptum JF-5 hypothetical protein YP_001220067.1 25710 D 349163 CDS YP_001220068.1 148243829 5159185 26164..28842 1 NC_009468.1 TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; CRISPR-associated helicase Cas3 28842 5159185 Acry_3314 Acidiphilium cryptum JF-5 CRISPR-associated helicase Cas3 YP_001220068.1 26164 D 349163 CDS YP_001220069.1 148243830 5159244 29133..30722 1 NC_009468.1 TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated Cse1 family protein 30722 5159244 Acry_3315 Acidiphilium cryptum JF-5 CRISPR-associated Cse1 family protein YP_001220069.1 29133 D 349163 CDS YP_001220070.1 148243831 5159221 30719..31258 1 NC_009468.1 hypothetical protein 31258 5159221 Acry_3316 Acidiphilium cryptum JF-5 hypothetical protein YP_001220070.1 30719 D 349163 CDS YP_001220071.1 148243832 5159121 31258..32370 1 NC_009468.1 TIGRFAM: CRISPR-associated protein, Cse4 family; CRISPR-associated Cse4 family protein 32370 5159121 Acry_3317 Acidiphilium cryptum JF-5 CRISPR-associated Cse4 family protein YP_001220071.1 31258 D 349163 CDS YP_001220072.1 148243833 5159222 32372..33121 1 NC_009468.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; CRISPR-associated Cas5 family protein 33121 5159222 Acry_3318 Acidiphilium cryptum JF-5 CRISPR-associated Cas5 family protein YP_001220072.1 32372 D 349163 CDS YP_001220073.1 148243834 5159236 33127..33804 1 NC_009468.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein, CT1974; CRISPR-associated Cse3 family protein 33804 5159236 Acry_3319 Acidiphilium cryptum JF-5 CRISPR-associated Cse3 family protein YP_001220073.1 33127 D 349163 CDS YP_001220074.1 148243835 5159150 33797..34759 1 NC_009468.1 TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 34759 5159150 Acry_3320 Acidiphilium cryptum JF-5 CRISPR-associated Cas1 family protein YP_001220074.1 33797 D 349163 CDS YP_001220075.1 148243836 5159267 complement(38112..40184) 1 NC_009468.1 hypothetical protein 40184 5159267 Acry_3321 Acidiphilium cryptum JF-5 hypothetical protein YP_001220075.1 38112 R 349163 CDS YP_001220076.1 148243837 5159233 complement(40187..41011) 1 NC_009468.1 hypothetical protein 41011 5159233 Acry_3322 Acidiphilium cryptum JF-5 hypothetical protein YP_001220076.1 40187 R 349163 CDS YP_001220077.1 148243838 5159229 complement(41008..41421) 1 NC_009468.1 hypothetical protein 41421 5159229 Acry_3323 Acidiphilium cryptum JF-5 hypothetical protein YP_001220077.1 41008 R 349163 CDS YP_001220078.1 148243839 5159149 41657..42250 1 NC_009468.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; resolvase domain-containing protein 42250 5159149 Acry_3324 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220078.1 41657 D 349163 CDS YP_001220079.1 148243840 5159145 42244..43443 1 NC_009468.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 43443 5159145 Acry_3325 Acidiphilium cryptum JF-5 IS605 family transposase OrfB YP_001220079.1 42244 D 349163 CDS YP_001220080.1 148243841 5159141 43830..44450 1 NC_009468.1 PFAM: DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1; DNA recombination protein RuvA 44450 5159141 Acry_3326 Acidiphilium cryptum JF-5 DNA recombination protein RuvA YP_001220080.1 43830 D 349163 CDS YP_001220081.1 148243842 5159146 44507..45445 1 NC_009468.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 45445 ruvB 5159146 ruvB Acidiphilium cryptum JF-5 Holliday junction DNA helicase RuvB YP_001220081.1 44507 D 349163 CDS YP_001220082.1 148243843 5159147 45445..45996 1 NC_009468.1 hypothetical protein 45996 5159147 Acry_3328 Acidiphilium cryptum JF-5 hypothetical protein YP_001220082.1 45445 D 349163 CDS YP_001220083.1 148243844 5159230 complement(46324..46656) 1 NC_009468.1 hypothetical protein 46656 5159230 Acry_3329 Acidiphilium cryptum JF-5 hypothetical protein YP_001220083.1 46324 R 349163 CDS YP_001220084.1 148243845 5159143 46722..46973 1 NC_009468.1 hypothetical protein 46973 5159143 Acry_3330 Acidiphilium cryptum JF-5 hypothetical protein YP_001220084.1 46722 D 349163 CDS YP_001220085.1 148243846 5159137 47613..48353 1 NC_009468.1 PFAM: YceI family protein; YceI family protein 48353 5159137 Acry_3331 Acidiphilium cryptum JF-5 YceI family protein YP_001220085.1 47613 D 349163 CDS YP_001220086.1 148243847 5159136 48346..48891 1 NC_009468.1 PFAM: cytochrome B561; cytochrome B561 48891 5159136 Acry_3332 Acidiphilium cryptum JF-5 cytochrome B561 YP_001220086.1 48346 D 349163 CDS YP_001220087.1 148243848 5159135 49942..50958 1 NC_009468.1 hypothetical protein 50958 5159135 Acry_3333 Acidiphilium cryptum JF-5 hypothetical protein YP_001220087.1 49942 D 349163 CDS YP_001220088.1 148243849 5159134 complement(51404..52369) 1 NC_009468.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 52369 5159134 Acry_3334 Acidiphilium cryptum JF-5 diguanylate cyclase YP_001220088.1 51404 R 349163 CDS YP_001220089.1 148243850 5159133 53072..53572 1 NC_009468.1 hypothetical protein 53572 5159133 Acry_3335 Acidiphilium cryptum JF-5 hypothetical protein YP_001220089.1 53072 D 349163 CDS YP_001220090.1 148243851 5159132 53885..54379 1 NC_009468.1 hypothetical protein 54379 5159132 Acry_3336 Acidiphilium cryptum JF-5 hypothetical protein YP_001220090.1 53885 D 349163 CDS YP_001220091.1 148243852 5159131 complement(54386..55231) 1 NC_009468.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 55231 5159131 Acry_3337 Acidiphilium cryptum JF-5 hypothetical protein YP_001220091.1 54386 R 349163 CDS YP_001220092.1 148243853 5159128 complement(55335..55895) 1 NC_009468.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; resolvase domain-containing protein 55895 5159128 Acry_3338 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220092.1 55335 R 349163 CDS YP_001220093.1 148243854 5159127 55948..56460 1 NC_009468.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 56460 5159127 Acry_3339 Acidiphilium cryptum JF-5 transposase IS3/IS911 family protein YP_001220093.1 55948 D 349163 CDS YP_001220094.1 148243855 5159125 56496..56885 1 NC_009468.1 hypothetical protein 56885 5159125 Acry_3340 Acidiphilium cryptum JF-5 hypothetical protein YP_001220094.1 56496 D 349163 CDS YP_001220095.1 148243856 5159124 57023..57577 1 NC_009468.1 hypothetical protein 57577 5159124 Acry_3341 Acidiphilium cryptum JF-5 hypothetical protein YP_001220095.1 57023 D 349163 CDS YP_001220096.1 148243857 5159123 57759..58571 1 NC_009468.1 PFAM: metallophosphoesterase; metallophosphoesterase 58571 5159123 Acry_3342 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001220096.1 57759 D 349163 CDS YP_001220097.1 148243858 5159122 58568..59284 1 NC_009468.1 PFAM: metallophosphoesterase; metallophosphoesterase 59284 5159122 Acry_3343 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001220097.1 58568 D 349163 CDS YP_001220098.1 148243859 5159120 complement(59338..59736) 1 NC_009468.1 hypothetical protein 59736 5159120 Acry_3344 Acidiphilium cryptum JF-5 hypothetical protein YP_001220098.1 59338 R 349163 CDS YP_001220099.1 148243860 5159119 complement(59936..60745) 1 NC_009468.1 PFAM: regulatory protein, IclR; regulatory protein, IclR 60745 5159119 Acry_3345 Acidiphilium cryptum JF-5 regulatory protein, IclR YP_001220099.1 59936 R 349163 CDS YP_001220100.1 148243861 5159118 60944..61801 1 NC_009468.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 61801 5159118 Acry_3346 Acidiphilium cryptum JF-5 ABC transporter related YP_001220100.1 60944 D 349163 CDS YP_001220101.1 148243862 5159116 61818..63128 1 NC_009468.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 63128 5159116 Acry_3347 Acidiphilium cryptum JF-5 acetylornithine deacetylase YP_001220101.1 61818 D 349163 CDS YP_001220102.1 148243863 5159115 63145..63894 1 NC_009468.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 63894 5159115 Acry_3348 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001220102.1 63145 D 349163 CDS YP_001220103.1 148243864 5159113 65524..67017 1 NC_009468.1 PFAM: Na+/solute symporter; Na+/solute symporter 67017 5159113 Acry_3350 Acidiphilium cryptum JF-5 Na+/solute symporter YP_001220103.1 65524 D 349163 CDS YP_001220104.1 148243865 5159111 67234..67698 1 NC_009468.1 hypothetical protein 67698 5159111 Acry_3351 Acidiphilium cryptum JF-5 hypothetical protein YP_001220104.1 67234 D 349163 CDS YP_001220105.1 148243866 5159110 67707..68312 1 NC_009468.1 PFAM: restriction endonuclease; restriction endonuclease 68312 5159110 Acry_3352 Acidiphilium cryptum JF-5 restriction endonuclease YP_001220105.1 67707 D 349163 CDS YP_001220106.1 148243867 5159109 complement(68322..68723) 1 NC_009468.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 68723 5159109 Acry_3353 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001220106.1 68322 R 349163 CDS YP_001220107.1 148243868 5159112 complement(68839..69462) 1 NC_009468.1 hypothetical protein 69462 5159112 Acry_3354 Acidiphilium cryptum JF-5 hypothetical protein YP_001220107.1 68839 R 349163 CDS YP_001220108.1 148243869 5159148 complement(69561..70400) 1 NC_009468.1 hypothetical protein 70400 5159148 Acry_3355 Acidiphilium cryptum JF-5 hypothetical protein YP_001220108.1 69561 R 349163 CDS YP_001220109.1 148243870 5159223 complement(70677..70916) 1 NC_009468.1 hypothetical protein 70916 5159223 Acry_3356 Acidiphilium cryptum JF-5 hypothetical protein YP_001220109.1 70677 R 349163 CDS YP_001220110.1 148243871 5159214 71007..71858 1 NC_009468.1 hypothetical protein 71858 5159214 Acry_3357 Acidiphilium cryptum JF-5 hypothetical protein YP_001220110.1 71007 D 349163 CDS YP_001220111.1 148243872 5159216 complement(71903..73144) 1 NC_009468.1 PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 73144 5159216 Acry_3358 Acidiphilium cryptum JF-5 filamentation induced by cAMP protein Fic YP_001220111.1 71903 R 349163 CDS YP_001220112.1 148243873 5159212 complement(73293..74399) 1 NC_009468.1 hypothetical protein 74399 5159212 Acry_3359 Acidiphilium cryptum JF-5 hypothetical protein YP_001220112.1 73293 R 349163 CDS YP_001220113.1 148243874 5159191 74540..75703 1 NC_009468.1 hypothetical protein 75703 5159191 Acry_3360 Acidiphilium cryptum JF-5 hypothetical protein YP_001220113.1 74540 D 349163 CDS YP_001220114.1 148243875 5159248 complement(75757..76203) 1 NC_009468.1 hypothetical protein 76203 5159248 Acry_3361 Acidiphilium cryptum JF-5 hypothetical protein YP_001220114.1 75757 R 349163 CDS YP_001220115.1 148243876 5159208 complement(76365..76922) 1 NC_009468.1 hypothetical protein 76922 5159208 Acry_3362 Acidiphilium cryptum JF-5 hypothetical protein YP_001220115.1 76365 R 349163 CDS YP_001220116.1 148243877 5159209 77163..77720 1 NC_009468.1 PFAM: nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase 77720 5159209 Acry_3363 Acidiphilium cryptum JF-5 nucleoside 2-deoxyribosyltransferase YP_001220116.1 77163 D 349163 CDS YP_001220117.1 148243878 5159207 78680..80134 1 NC_009468.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 80134 5159207 Acry_3364 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001220117.1 78680 D 349163 CDS YP_001220118.1 148243879 5159205 80122..81303 1 NC_009468.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 81303 5159205 Acry_3365 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001220118.1 80122 D 349163 CDS YP_001220119.1 148243880 5159252 81684..83159 1 NC_009468.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase central domain-containing protein 83159 5159252 Acry_3366 Acidiphilium cryptum JF-5 ATPase central domain-containing protein YP_001220119.1 81684 D 349163 CDS YP_001220120.1 148243881 5159203 83313..83666 1 NC_009468.1 hypothetical protein 83666 5159203 Acry_3367 Acidiphilium cryptum JF-5 hypothetical protein YP_001220120.1 83313 D 349163 CDS YP_001220121.1 148243882 5159129 83663..84184 1 NC_009468.1 hypothetical protein 84184 5159129 Acry_3368 Acidiphilium cryptum JF-5 hypothetical protein YP_001220121.1 83663 D 349163 CDS YP_001220122.1 148243883 5159126 complement(84188..86872) 1 NC_009468.1 PFAM: sigma-70 region 4 domain protein; sigma-70 region 4 domain-containing protein 86872 5159126 Acry_3369 Acidiphilium cryptum JF-5 sigma-70 region 4 domain-containing protein YP_001220122.1 84188 R 349163 CDS YP_001220123.1 148243884 5159117 complement(87261..87539) 1 NC_009468.1 hypothetical protein 87539 5159117 Acry_3370 Acidiphilium cryptum JF-5 hypothetical protein YP_001220123.1 87261 R 349163 CDS YP_001220124.1 148243885 5159201 87871..88137 1 NC_009468.1 PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 88137 5159201 Acry_3371 Acidiphilium cryptum JF-5 helix-turn-helix domain-containing protein YP_001220124.1 87871 D 349163 CDS YP_001220125.1 148243886 5159198 88134..89282 1 NC_009468.1 PFAM: HipA domain protein; HipA domain-containing protein 89282 5159198 Acry_3372 Acidiphilium cryptum JF-5 HipA domain-containing protein YP_001220125.1 88134 D 349163 CDS YP_001220126.1 148243887 5159196 89444..89701 1 NC_009468.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain-containing protein 89701 5159196 Acry_3373 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220126.1 89444 D 349163 CDS YP_001220127.1 148243888 5159195 90016..90147 1 NC_009468.1 hypothetical protein 90147 5159195 Acry_3375 Acidiphilium cryptum JF-5 hypothetical protein YP_001220127.1 90016 D 349163 CDS YP_001220128.1 148243889 5159199 90683..93145 1 NC_009468.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; putative phosphoketolase 93145 5159199 Acry_3376 Acidiphilium cryptum JF-5 putative phosphoketolase YP_001220128.1 90683 D 349163 CDS YP_001220129.1 148243890 5159265 93356..93748 1 NC_009468.1 hypothetical protein 93748 5159265 Acry_3377 Acidiphilium cryptum JF-5 hypothetical protein YP_001220129.1 93356 D 349163 CDS YP_001220130.1 148243891 5159194 complement(94167..94619) 1 NC_009468.1 hypothetical protein 94619 5159194 Acry_3378 Acidiphilium cryptum JF-5 hypothetical protein YP_001220130.1 94167 R 349163 CDS YP_001220131.1 148243892 5159263 94823..96502 1 NC_009468.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 96502 5159263 Acry_3379 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001220131.1 94823 D 349163 CDS YP_001220132.1 148243893 5159193 97123..97491 1 NC_009468.1 hypothetical protein 97491 5159193 Acry_3380 Acidiphilium cryptum JF-5 hypothetical protein YP_001220132.1 97123 D 349163 CDS YP_001220133.1 148243894 5159102 97955..98353 1 NC_009468.1 hypothetical protein 98353 5159102 Acry_3381 Acidiphilium cryptum JF-5 hypothetical protein YP_001220133.1 97955 D 349163 CDS YP_001220134.1 148243895 5159249 complement(99228..100943) 1 NC_009468.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate binding domain-containing protein 100943 5159249 Acry_3383 Acidiphilium cryptum JF-5 thiamine pyrophosphate binding domain-containing protein YP_001220134.1 99228 R 349163 CDS YP_001220135.1 148243896 5159251 complement(100957..102585) 1 NC_009468.1 PFAM: ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 102585 5159251 Acry_3384 Acidiphilium cryptum JF-5 ferredoxin-dependent glutamate synthase YP_001220135.1 100957 R 349163 CDS YP_001220136.1 148243897 5159258 103176..104042 1 NC_009468.1 PFAM: MltA-interacting MipA family protein; MltA-interacting MipA family protein 104042 5159258 Acry_3385 Acidiphilium cryptum JF-5 MltA-interacting MipA family protein YP_001220136.1 103176 D 349163 CDS YP_001220137.1 148243898 5159257 complement(104254..104646) 1 NC_009468.1 hypothetical protein 104646 5159257 Acry_3386 Acidiphilium cryptum JF-5 hypothetical protein YP_001220137.1 104254 R 349163 CDS YP_001220138.1 148243899 5159182 complement(104711..105934) 1 NC_009468.1 PFAM: transposase, mutator type; transposase, mutator type 105934 5159182 Acry_3387 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220138.1 104711 R 349163 CDS YP_001220139.1 148243900 5159188 106073..106405 1 NC_009468.1 hypothetical protein 106405 5159188 Acry_3388 Acidiphilium cryptum JF-5 hypothetical protein YP_001220139.1 106073 D 349163 CDS YP_001220140.1 148243901 5159178 complement(106903..107499) 1 NC_009468.1 hypothetical protein 107499 5159178 Acry_3389 Acidiphilium cryptum JF-5 hypothetical protein YP_001220140.1 106903 R 349163 CDS YP_001220141.1 148243902 5159183 109594..111663 1 NC_009468.1 PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 111663 5159183 Acry_3392 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220141.1 109594 D 349163 CDS YP_001220142.1 148243903 5159187 complement(111675..112499) 1 NC_009468.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 112499 5159187 Acry_3393 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220142.1 111675 R 349163 CDS YP_001220143.1 148243904 5159176 112521..113435 1 NC_009468.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 113435 5159176 Acry_3394 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001220143.1 112521 D 349163 CDS YP_001220144.1 148243905 5159190 complement(113781..114083) 1 NC_009468.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 114083 5159190 Acry_3395 Acidiphilium cryptum JF-5 transposase IS3/IS911 family protein YP_001220144.1 113781 R 349163 CDS YP_001220145.1 148243906 5159177 complement(114946..115974) 1 NC_009468.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 115974 5159177 Acry_3396 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001220145.1 114946 R 349163 CDS YP_001220146.1 148243907 5159179 116044..116397 1 NC_009468.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 116397 5159179 Acry_3397 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001220146.1 116044 D 349163 CDS YP_001220147.1 148243908 5159180 complement(116499..116723) 1 NC_009468.1 hypothetical protein 116723 5159180 Acry_3398 Acidiphilium cryptum JF-5 hypothetical protein YP_001220147.1 116499 R 349163 CDS YP_001220148.1 148243909 5159184 116928..118475 1 NC_009468.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 118475 5159184 Acry_3399 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220148.1 116928 D 349163 CDS YP_001220149.1 148243910 5159181 118493..119239 1 NC_009468.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 119239 5159181 Acry_3400 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220149.1 118493 D 349163 CDS YP_001220150.1 148243911 5159215 complement(120006..120416) 1 NC_009468.1 hypothetical protein 120416 5159215 Acry_3401 Acidiphilium cryptum JF-5 hypothetical protein YP_001220150.1 120006 R 349163 CDS YP_001220151.1 148243912 5159174 complement(120451..121296) 1 NC_009468.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC protein, arabinose-binding/dimerisation 121296 5159174 Acry_3402 Acidiphilium cryptum JF-5 AraC protein, arabinose-binding/dimerisation YP_001220151.1 120451 R 349163 CDS YP_001220152.1 148243913 5159210 complement(121975..122688) 1 NC_009468.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 122688 5159210 Acry_3403 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001220152.1 121975 R 349163 CDS YP_001220153.1 148243914 5159228 122849..123253 1 NC_009468.1 PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 123253 5159228 Acry_3404 Acidiphilium cryptum JF-5 carboxymuconolactone decarboxylase YP_001220153.1 122849 D 349163 CDS YP_001220154.1 148243915 5159274 123256..124173 1 NC_009468.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, NAD-binding 124173 5159274 Acry_3405 Acidiphilium cryptum JF-5 6-phosphogluconate dehydrogenase, NAD-binding YP_001220154.1 123256 D 349163 CDS YP_001220155.1 148243916 5159276 124229..125566 1 NC_009468.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 125566 5159276 Acry_3406 Acidiphilium cryptum JF-5 major facilitator transporter YP_001220155.1 124229 D 349163 CDS YP_001220156.1 148243917 5159246 125577..126365 1 NC_009468.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 126365 5159246 Acry_3407 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001220156.1 125577 D 349163 CDS YP_001220157.1 148243918 5159247 126362..127243 1 NC_009468.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 127243 5159247 Acry_3408 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001220157.1 126362 D 349163 CDS YP_001220158.1 148243919 5159169 127236..128147 1 NC_009468.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, NAD-binding 128147 5159169 Acry_3409 Acidiphilium cryptum JF-5 6-phosphogluconate dehydrogenase, NAD-binding YP_001220158.1 127236 D 349163 CDS YP_001220159.1 148243920 5159218 128144..128524 1 NC_009468.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein 128524 5159218 Acry_3410 Acidiphilium cryptum JF-5 cupin 2 domain-containing protein YP_001220159.1 128144 D 349163 CDS YP_001220160.1 148243921 5159219 128521..129273 1 NC_009468.1 PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 129273 5159219 Acry_3411 Acidiphilium cryptum JF-5 carboxymuconolactone decarboxylase YP_001220160.1 128521 D 349163 CDS YP_001220161.1 148243922 5159204 129513..129839 1 NC_009468.1 PFAM: NIPSNAP family containing protein; NIPSNAP family protein 129839 5159204 Acry_3412 Acidiphilium cryptum JF-5 NIPSNAP family protein YP_001220161.1 129513 D 349163 CDS YP_001220162.1 148243923 5159271 complement(130005..130247) 1 NC_009468.1 hypothetical protein 130247 5159271 Acry_3413 Acidiphilium cryptum JF-5 hypothetical protein YP_001220162.1 130005 R 349163 CDS YP_001220163.1 148243924 5159275 130412..130687 1 NC_009468.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 130687 5159275 Acry_3414 Acidiphilium cryptum JF-5 transposase IS3/IS911 family protein YP_001220163.1 130412 D 349163 CDS YP_001220164.1 148243925 5159220 130732..131580 1 NC_009468.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 131580 5159220 Acry_3415 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220164.1 130732 D 349163 CDS YP_001220165.1 148243926 5159272 complement(131823..132533) 1 NC_009468.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 132533 5159272 Acry_3416 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001220165.1 131823 R 349163 CDS YP_001220166.1 148243927 5159213 complement(132767..133174) 1 NC_009468.1 hypothetical protein 133174 5159213 Acry_3417 Acidiphilium cryptum JF-5 hypothetical protein YP_001220166.1 132767 R 349163 CDS YP_001220167.1 148243928 5159192 complement(133352..134554) 1 NC_009468.1 PFAM: aminotransferase, class V; Serine--glyoxylate transaminase 134554 5159192 Acry_3418 Acidiphilium cryptum JF-5 Serine--glyoxylate transaminase YP_001220167.1 133352 R 349163 CDS YP_001220168.1 148243929 5159171 complement(134578..135570) 1 NC_009468.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 135570 5159171 Acry_3419 Acidiphilium cryptum JF-5 bile acid:sodium symporter YP_001220168.1 134578 R 349163 CDS YP_001220169.1 148243930 5159142 complement(135694..136479) 1 NC_009468.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 136479 5159142 Acry_3420 Acidiphilium cryptum JF-5 enoyl-CoA hydratase YP_001220169.1 135694 R 349163 CDS YP_001220170.1 148243931 5159217 complement(136476..137726) 1 NC_009468.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 137726 5159217 Acry_3421 Acidiphilium cryptum JF-5 L-carnitine dehydratase/bile acid-inducible protein F YP_001220170.1 136476 R 349163 CDS YP_001220171.1 148243932 5159202 137854..138498 1 NC_009468.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 138498 5159202 Acry_3422 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001220171.1 137854 D 349163 CDS YP_001220172.1 148243933 5159153 complement(138980..139636) 1 NC_009468.1 PFAM: cytochrome B561; cytochrome B561 139636 5159153 Acry_3424 Acidiphilium cryptum JF-5 cytochrome B561 YP_001220172.1 138980 R 349163 CDS YP_001220173.1 148243934 5159273 complement(139958..140659) 1 NC_009468.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 140659 5159273 Acry_3425 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001220173.1 139958 R 349163 CDS YP_001220174.1 148243935 5159270 complement(140686..141402) 1 NC_009468.1 arabinose efflux permease-like protein 141402 5159270 Acry_3426 Acidiphilium cryptum JF-5 arabinose efflux permease-like protein YP_001220174.1 140686 R 349163 CDS YP_001220175.1 148243936 5159254 complement(141399..141842) 1 NC_009468.1 hypothetical protein 141842 5159254 Acry_3427 Acidiphilium cryptum JF-5 hypothetical protein YP_001220175.1 141399 R 349163 CDS YP_001220176.1 148243937 5159172 141934..142869 1 NC_009468.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 142869 5159172 Acry_3428 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001220176.1 141934 D 349163 CDS YP_001220177.1 148243938 5159139 143385..144269 1 NC_009468.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 144269 5159139 Acry_3430 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001220177.1 143385 D 349163 CDS YP_001220178.1 148243939 5159268 complement(144451..144894) 1 NC_009468.1 hypothetical protein 144894 5159268 Acry_3431 Acidiphilium cryptum JF-5 hypothetical protein YP_001220178.1 144451 R 349163 CDS YP_001220179.1 148243940 5159106 complement(145475..146626) 1 NC_009468.1 hypothetical protein 146626 5159106 Acry_3432 Acidiphilium cryptum JF-5 hypothetical protein YP_001220179.1 145475 R 349163 CDS YP_001220180.1 148243941 5159105 146712..147503 1 NC_009468.1 hypothetical protein 147503 5159105 Acry_3433 Acidiphilium cryptum JF-5 hypothetical protein YP_001220180.1 146712 D 349163 CDS YP_001220181.1 148243942 5159144 147715..148842 1 NC_009468.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein 148842 5159144 Acry_3434 Acidiphilium cryptum JF-5 phage integrase domain/SAM domain-containing protein YP_001220181.1 147715 D 349163 CDS YP_001220182.1 148243943 5159107 complement(149342..149917) 1 NC_009468.1 hypothetical protein 149917 5159107 Acry_3436 Acidiphilium cryptum JF-5 hypothetical protein YP_001220182.1 149342 R 349163 CDS YP_001220183.1 148243944 5159104 150068..150529 1 NC_009468.1 hypothetical protein 150529 5159104 Acry_3437 Acidiphilium cryptum JF-5 hypothetical protein YP_001220183.1 150068 D 349163 CDS YP_001220184.1 148243945 5159189 150680..151297 1 NC_009468.1 hypothetical protein 151297 5159189 Acry_3438 Acidiphilium cryptum JF-5 hypothetical protein YP_001220184.1 150680 D 349163 CDS YP_001220185.1 148243946 5159152 151956..152618 1 NC_009468.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 152618 5159152 Acry_3439 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001220185.1 151956 D 349163 CDS YP_001220186.1 148243947 5159224 153446..154381 1 NC_009468.1 PFAM: plasmid encoded RepA protein; plasmid encoded RepA protein 154381 5159224 Acry_3440 Acidiphilium cryptum JF-5 plasmid encoded RepA protein YP_001220186.1 153446 D 349163 CDS YP_001220187.1 148243948 5159154 complement(154742..155326) 1 NC_009468.1 hypothetical protein 155326 5159154 Acry_3441 Acidiphilium cryptum JF-5 hypothetical protein YP_001220187.1 154742 R 349163 CDS YP_001220188.1 148243949 5159140 complement(155465..156511) 1 NC_009468.1 hypothetical protein 156511 5159140 Acry_3442 Acidiphilium cryptum JF-5 hypothetical protein YP_001220188.1 155465 R 349163 CDS YP_001220189.1 148243950 5159231 complement(156542..159727) 1 NC_009468.1 superfamily I DNA/RNA helicase 159727 5159231 Acry_3443 Acidiphilium cryptum JF-5 superfamily I DNA/RNA helicase YP_001220189.1 156542 R 349163 CDS YP_001220190.1 148243951 5159166 159926..160303 1 NC_009468.1 hypothetical protein 160303 5159166 Acry_3444 Acidiphilium cryptum JF-5 hypothetical protein YP_001220190.1 159926 D 349163 CDS YP_001220191.1 148243952 5159164 160447..161007 1 NC_009468.1 hypothetical protein 161007 5159164 Acry_3445 Acidiphilium cryptum JF-5 hypothetical protein YP_001220191.1 160447 D 349163 CDS YP_001220192.1 148243953 5159161 complement(161163..163016) 1 NC_009468.1 PFAM: HipA domain protein; HipA domain-containing protein 163016 5159161 Acry_3446 Acidiphilium cryptum JF-5 HipA domain-containing protein YP_001220192.1 161163 R 349163 CDS YP_001220193.1 148243954 5159138 complement(163196..164137) 1 NC_009468.1 hypothetical protein 164137 5159138 Acry_3447 Acidiphilium cryptum JF-5 hypothetical protein YP_001220193.1 163196 R 349163 CDS YP_001220194.1 148243955 5159108 complement(164140..164691) 1 NC_009468.1 hypothetical protein 164691 5159108 Acry_3448 Acidiphilium cryptum JF-5 hypothetical protein YP_001220194.1 164140 R 349163 CDS YP_001220195.1 148243956 5159237 complement(165544..166482) 1 NC_009468.1 hypothetical protein 166482 5159237 Acry_3449 Acidiphilium cryptum JF-5 hypothetical protein YP_001220195.1 165544 R 349163 CDS YP_001220196.1 148243957 5159235 167207..167761 1 NC_009468.1 hypothetical protein 167761 5159235 Acry_3450 Acidiphilium cryptum JF-5 hypothetical protein YP_001220196.1 167207 D 349163 CDS YP_001220197.1 148243958 5159226 complement(167766..168089) 1 NC_009468.1 hypothetical protein 168089 5159226 Acry_3451 Acidiphilium cryptum JF-5 hypothetical protein YP_001220197.1 167766 R 349163 CDS YP_001220198.1 148243959 5159155 168288..168647 1 NC_009468.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 168647 5159155 Acry_3452 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001220198.1 168288 D 349163 CDS YP_001220199.1 148243960 5159157 complement(168714..169349) 1 NC_009468.1 hypothetical protein 169349 5159157 Acry_3453 Acidiphilium cryptum JF-5 hypothetical protein YP_001220199.1 168714 R 349163 CDS YP_001220200.1 148243961 5159159 complement(169336..169698) 1 NC_009468.1 TIGRFAM: prevent-host-death family protein; prevent-host-death family protein 169698 5159159 Acry_3454 Acidiphilium cryptum JF-5 prevent-host-death family protein YP_001220200.1 169336 R 349163 CDS YP_001220201.1 148243962 5159163 complement(170187..170666) 1 NC_009468.1 PFAM: protein of unknown function DUF805; hypothetical protein 170666 5159163 Acry_3455 Acidiphilium cryptum JF-5 hypothetical protein YP_001220201.1 170187 R 349163 CDS YP_001220202.1 148243963 5159168 complement(170868..171578) 1 NC_009468.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 171578 5159168 Acry_3456 Acidiphilium cryptum JF-5 ABC transporter related YP_001220202.1 170868 R 349163 CDS YP_001220203.1 148243964 5159167 complement(171575..172339) 1 NC_009468.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 172339 5159167 Acry_3457 Acidiphilium cryptum JF-5 ABC transporter related YP_001220203.1 171575 R 349163 CDS YP_001220204.1 148243965 5159103 complement(172336..173322) 1 NC_009468.1 PFAM: inner-membrane translocator; inner-membrane translocator 173322 5159103 Acry_3458 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001220204.1 172336 R 349163 CDS YP_001220205.1 148243966 5159269 complement(173319..174188) 1 NC_009468.1 PFAM: inner-membrane translocator; inner-membrane translocator 174188 5159269 Acry_3459 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001220205.1 173319 R 349163 CDS YP_001220206.1 148243967 5159165 complement(174309..175562) 1 NC_009468.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 175562 5159165 Acry_3460 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001220206.1 174309 R 349163 CDS YP_001220207.1 148243968 5159158 complement(175768..176991) 1 NC_009468.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 176991 5159158 Acry_3461 Acidiphilium cryptum JF-5 cyclopropane-fatty-acyl-phospholipid synthase YP_001220207.1 175768 R 349163 CDS YP_001220208.1 148243969 5159160 complement(177004..178908) 1 NC_009468.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; CBS domain-containing protein 178908 5159160 Acry_3462 Acidiphilium cryptum JF-5 CBS domain-containing protein YP_001220208.1 177004 R 349163 CDS YP_001220209.1 148243970 5159170 complement(180267..181043) 1 NC_009468.1 hypothetical protein 181043 5159170 Acry_3464 Acidiphilium cryptum JF-5 hypothetical protein YP_001220209.1 180267 R 349163 CDS YP_001220210.1 148243971 5159162 complement(181079..181648) 1 NC_009468.1 hypothetical protein 181648 5159162 Acry_3465 Acidiphilium cryptum JF-5 hypothetical protein YP_001220210.1 181079 R 349163 CDS YP_001220211.1 148243972 5159243 complement(181717..182976) 1 NC_009468.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 182976 5159243 Acry_3466 Acidiphilium cryptum JF-5 major facilitator transporter YP_001220211.1 181717 R 349163 CDS YP_001220212.1 148243973 5159238 complement(182982..183713) 1 NC_009468.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 183713 5159238 Acry_3467 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001220212.1 182982 R 349163 CDS YP_001220213.1 148243974 5159151 183799..184464 1 NC_009468.1 PFAM: Rhodanese domain protein; regulatory protein, ArsR; rhodanese domain-containing protein 184464 5159151 Acry_3468 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001220213.1 183799 D 349163 CDS YP_001220214.1 148243975 5159227 complement(185034..186230) 1 NC_009468.1 PFAM: putative transposase; putative transposase 186230 5159227 Acry_3469 Acidiphilium cryptum JF-5 putative transposase YP_001220214.1 185034 R 349163 CDS YP_001220215.1 148243976 5159206 complement(186235..187143) 1 NC_009468.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 187143 5159206 Acry_3470 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220215.1 186235 R 349163 CDS YP_001220216.1 148243978 5159291 complement(452..1051) 1 NC_009469.1 PFAM: cytochrome c, class I; cytochrome c, class I 1051 5159291 Acry_3471 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001220216.1 452 R 349163 CDS YP_001220217.1 148243979 5159293 complement(1381..2487) 1 NC_009469.1 hypothetical protein 2487 5159293 Acry_3472 Acidiphilium cryptum JF-5 hypothetical protein YP_001220217.1 1381 R 349163 CDS YP_001220218.1 148243980 5159354 2688..3359 1 NC_009469.1 hypothetical protein 3359 5159354 Acry_3473 Acidiphilium cryptum JF-5 hypothetical protein YP_001220218.1 2688 D 349163 CDS YP_001220219.1 148243981 5159316 3491..4162 1 NC_009469.1 hypothetical protein 4162 5159316 Acry_3474 Acidiphilium cryptum JF-5 hypothetical protein YP_001220219.1 3491 D 349163 CDS YP_001220220.1 148243982 5159329 4159..5154 1 NC_009469.1 PFAM: peptidase U32; peptidase U32 5154 5159329 Acry_3475 Acidiphilium cryptum JF-5 peptidase U32 YP_001220220.1 4159 D 349163 CDS YP_001220221.1 148243983 5159333 5151..6050 1 NC_009469.1 PFAM: peptidase U32; peptidase U32 6050 5159333 Acry_3476 Acidiphilium cryptum JF-5 peptidase U32 YP_001220221.1 5151 D 349163 CDS YP_001220222.1 148243984 5159339 6120..7280 1 NC_009469.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 7280 5159339 Acry_3477 Acidiphilium cryptum JF-5 endoribonuclease L-PSP YP_001220222.1 6120 D 349163 CDS YP_001220223.1 148243985 5159340 7497..8426 1 NC_009469.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 8426 5159340 Acry_3478 Acidiphilium cryptum JF-5 pyridoxal biosynthesis lyase PdxS YP_001220223.1 7497 D 349163 CDS YP_001220224.1 148243986 5159349 8453..9040 1 NC_009469.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 9040 5159349 Acry_3479 Acidiphilium cryptum JF-5 glutamine amidotransferase subunit PdxT YP_001220224.1 8453 D 349163 CDS YP_001220225.1 148243987 5159303 9651..11534 1 NC_009469.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 11534 5159303 Acry_3480 Acidiphilium cryptum JF-5 anaerobic ribonucleoside triphosphate reductase YP_001220225.1 9651 D 349163 CDS YP_001220226.1 148243988 5159299 11521..12228 1 NC_009469.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein 12228 5159299 Acry_3481 Acidiphilium cryptum JF-5 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001220226.1 11521 D 349163 CDS YP_001220227.1 148243989 5159327 12650..13633 1 NC_009469.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 13633 5159327 Acry_3482 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001220227.1 12650 D 349163 CDS YP_001220228.1 148243990 5159298 complement(13617..14444) 1 NC_009469.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 14444 5159298 Acry_3483 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001220228.1 13617 R 349163 CDS YP_001220229.1 148243991 5159317 complement(14666..15412) 1 NC_009469.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 15412 5159317 Acry_3484 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220229.1 14666 R 349163 CDS YP_001220230.1 148243992 5159348 complement(15430..16977) 1 NC_009469.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 16977 5159348 Acry_3485 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220230.1 15430 R 349163 CDS YP_001220231.1 148243993 5159337 17437..18690 1 NC_009469.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 18690 5159337 Acry_3487 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001220231.1 17437 D 349163 CDS YP_001220232.1 148243994 5159355 19600..21297 1 NC_009469.1 TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K+ transporting ATPase, A subunit; potassium-transporting ATPase, A subunit 21297 5159355 Acry_3488 Acidiphilium cryptum JF-5 potassium-transporting ATPase, A subunit YP_001220232.1 19600 D 349163 CDS YP_001220233.1 148243995 5159290 21309..23345 1 NC_009469.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; K+-transporting ATPase, B subunit 23345 5159290 Acry_3489 Acidiphilium cryptum JF-5 K+-transporting ATPase, B subunit YP_001220233.1 21309 D 349163 CDS YP_001220234.1 148243996 5159325 23361..23960 1 NC_009469.1 TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase, C subunit 23960 5159325 Acry_3490 Acidiphilium cryptum JF-5 potassium-transporting ATPase, C subunit YP_001220234.1 23361 D 349163 CDS YP_001220235.1 148243997 5159346 23977..24477 1 NC_009469.1 hypothetical protein 24477 5159346 Acry_3491 Acidiphilium cryptum JF-5 hypothetical protein YP_001220235.1 23977 D 349163 CDS YP_001220236.1 148243998 5159296 24585..25796 1 NC_009469.1 hypothetical protein 25796 5159296 Acry_3492 Acidiphilium cryptum JF-5 hypothetical protein YP_001220236.1 24585 D 349163 CDS YP_001220237.1 148243999 5159289 26086..28689 1 NC_009469.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 28689 5159289 Acry_3493 Acidiphilium cryptum JF-5 osmosensitive K+ channel signal transduction histidine kinase YP_001220237.1 26086 D 349163 CDS YP_001220238.1 148244000 5159300 28686..29381 1 NC_009469.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 29381 5159300 Acry_3494 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001220238.1 28686 D 349163 CDS YP_001220239.1 148244001 5159320 complement(29420..29818) 1 NC_009469.1 hypothetical protein 29818 5159320 Acry_3495 Acidiphilium cryptum JF-5 hypothetical protein YP_001220239.1 29420 R 349163 CDS YP_001220240.1 148244002 5159313 complement(29818..32808) 1 NC_009469.1 PFAM: transposase Tn3 family protein; transposase Tn3 family protein 32808 5159313 Acry_3496 Acidiphilium cryptum JF-5 transposase Tn3 family protein YP_001220240.1 29818 R 349163 CDS YP_001220241.1 148244003 5159326 complement(32747..33406) 1 NC_009469.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 33406 5159326 Acry_3497 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220241.1 32747 R 349163 CDS YP_001220242.1 148244004 5159307 33812..34258 1 NC_009469.1 hypothetical protein 34258 5159307 Acry_3499 Acidiphilium cryptum JF-5 hypothetical protein YP_001220242.1 33812 D 349163 CDS YP_001220243.1 148244005 5159350 complement(34259..34534) 1 NC_009469.1 hypothetical protein 34534 5159350 Acry_3500 Acidiphilium cryptum JF-5 hypothetical protein YP_001220243.1 34259 R 349163 CDS YP_001220244.1 148244006 5159357 34957..35931 1 NC_009469.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 35931 5159357 Acry_3501 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220244.1 34957 D 349163 CDS YP_001220245.1 148244007 5159351 36270..37616 1 NC_009469.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 37616 5159351 Acry_3502 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001220245.1 36270 D 349163 CDS YP_001220246.1 148244008 5159356 complement(38074..38616) 1 NC_009469.1 antirestriction protein-like protein 38616 5159356 Acry_3504 Acidiphilium cryptum JF-5 antirestriction protein-like protein YP_001220246.1 38074 R 349163 CDS YP_001220247.1 148244009 5159322 complement(38619..39611) 1 NC_009469.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 39611 5159322 Acry_3505 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220247.1 38619 R 349163 CDS YP_001220248.1 148244010 5159305 complement(39608..40549) 1 NC_009469.1 PFAM: phage integrase family protein; phage integrase family protein 40549 5159305 Acry_3506 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220248.1 39608 R 349163 CDS YP_001220249.1 148244011 5159314 complement(40546..41757) 1 NC_009469.1 PFAM: phage integrase family protein; phage integrase family protein 41757 5159314 Acry_3507 Acidiphilium cryptum JF-5 phage integrase family protein YP_001220249.1 40546 R 349163 CDS YP_001220250.1 148244012 5159315 complement(41817..42542) 1 NC_009469.1 PFAM: domain of unknown function DUF1738; hypothetical protein 42542 5159315 Acry_3508 Acidiphilium cryptum JF-5 hypothetical protein YP_001220250.1 41817 R 349163 CDS YP_001220251.1 148244013 5159297 43114..44712 1 NC_009469.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 44712 5159297 Acry_3509 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220251.1 43114 D 349163 CDS YP_001220252.1 148244014 5159306 44709..45584 1 NC_009469.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 45584 5159306 Acry_3510 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220252.1 44709 D 349163 CDS YP_001220253.1 148244015 5159319 complement(45805..46215) 1 NC_009469.1 PFAM: PilT protein domain protein; PilT domain-containing protein 46215 5159319 Acry_3511 Acidiphilium cryptum JF-5 PilT domain-containing protein YP_001220253.1 45805 R 349163 CDS YP_001220254.1 148244016 5159301 complement(46212..46454) 1 NC_009469.1 PFAM: Rv0623 family protein transcription factor; transcription factor 46454 5159301 Acry_3512 Acidiphilium cryptum JF-5 transcription factor YP_001220254.1 46212 R 349163 CDS YP_001220255.1 148244017 5159341 complement(46521..47201) 1 NC_009469.1 PFAM: NERD domain protein; NERD domain-containing protein 47201 5159341 Acry_3513 Acidiphilium cryptum JF-5 NERD domain-containing protein YP_001220255.1 46521 R 349163 CDS YP_001220256.1 148244018 5159330 complement(47274..47615) 1 NC_009469.1 hypothetical protein 47615 5159330 Acry_3514 Acidiphilium cryptum JF-5 hypothetical protein YP_001220256.1 47274 R 349163 CDS YP_001220257.1 148244019 5159334 complement(47612..48271) 1 NC_009469.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 48271 5159334 Acry_3515 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001220257.1 47612 R 349163 CDS YP_001220258.1 148244020 5159344 48491..48832 1 NC_009469.1 PFAM: protein of unknown function DUF891; hypothetical protein 48832 5159344 Acry_3516 Acidiphilium cryptum JF-5 hypothetical protein YP_001220258.1 48491 D 349163 CDS YP_001220259.1 148244021 5159345 48829..49110 1 NC_009469.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 49110 5159345 Acry_3517 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001220259.1 48829 D 349163 CDS YP_001220260.1 148244022 5159304 complement(49198..50559) 1 NC_009469.1 PFAM: replication protein C; replication protein C 50559 5159304 Acry_3518 Acidiphilium cryptum JF-5 replication protein C YP_001220260.1 49198 R 349163 CDS YP_001220261.1 148244023 5159347 complement(50726..51496) 1 NC_009469.1 hypothetical protein 51496 5159347 Acry_3519 Acidiphilium cryptum JF-5 hypothetical protein YP_001220261.1 50726 R 349163 CDS YP_001220262.1 148244024 5159343 51980..52666 1 NC_009469.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 52666 5159343 Acry_3520 Acidiphilium cryptum JF-5 lytic transglycosylase, catalytic YP_001220262.1 51980 D 349163 CDS YP_001220263.1 148244025 5159328 52647..53012 1 NC_009469.1 PFAM: VIRB2 type IV secretion fmaily protein; VIRB2 type IV secretion fmaily protein 53012 5159328 Acry_3521 Acidiphilium cryptum JF-5 VIRB2 type IV secretion fmaily protein YP_001220263.1 52647 D 349163 CDS YP_001220264.1 148244026 5159302 53016..53348 1 NC_009469.1 PFAM: type IV secretory pathway, VirB3 family protein; type IV secretion system protein VirB3 53348 5159302 Acry_3522 Acidiphilium cryptum JF-5 type IV secretion system protein VirB3 YP_001220264.1 53016 D 349163 CDS YP_001220265.1 148244027 5159342 53338..55731 1 NC_009469.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system; type IV secretion system protein VirB4 55731 5159342 Acry_3523 Acidiphilium cryptum JF-5 type IV secretion system protein VirB4 YP_001220265.1 53338 D 349163 CDS YP_001220266.1 148244028 5159336 55741..56499 1 NC_009469.1 PFAM: type IV secretion system family protein; type IV secretion system family protein 56499 5159336 Acry_3524 Acidiphilium cryptum JF-5 type IV secretion system family protein YP_001220266.1 55741 D 349163 CDS YP_001220267.1 148244029 5159324 56729..57616 1 NC_009469.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; type IV secretion system protein VirB6 57616 5159324 Acry_3525 Acidiphilium cryptum JF-5 type IV secretion system protein VirB6 YP_001220267.1 56729 D 349163 CDS YP_001220268.1 148244030 5159335 57795..58496 1 NC_009469.1 PFAM: VirB8 family protein; type IV secretion system protein VirB8 58496 5159335 Acry_3526 Acidiphilium cryptum JF-5 type IV secretion system protein VirB8 YP_001220268.1 57795 D 349163 CDS YP_001220269.1 148244031 5159292 58493..59383 1 NC_009469.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; type IV secretion system protein VirB9 59383 5159292 Acry_3527 Acidiphilium cryptum JF-5 type IV secretion system protein VirB9 YP_001220269.1 58493 D 349163 CDS YP_001220270.1 148244032 5159309 59373..60509 1 NC_009469.1 PFAM: conjugation TrbI family protein; conjugation TrbI family protein 60509 5159309 Acry_3528 Acidiphilium cryptum JF-5 conjugation TrbI family protein YP_001220270.1 59373 D 349163 CDS YP_001220271.1 148244033 5159312 60506..60826 1 NC_009469.1 hypothetical protein 60826 5159312 Acry_3529 Acidiphilium cryptum JF-5 hypothetical protein YP_001220271.1 60506 D 349163 CDS YP_001220272.1 148244034 5159321 60823..61890 1 NC_009469.1 ATPase; type IV secretion system protein VirB11 61890 5159321 Acry_3530 Acidiphilium cryptum JF-5 type IV secretion system protein VirB11 YP_001220272.1 60823 D 349163 CDS YP_001220273.1 148244035 5159352 61890..63710 1 NC_009469.1 VirD4 family; conjugal transfer coupling protein TraG 63710 5159352 Acry_3531 Acidiphilium cryptum JF-5 conjugal transfer coupling protein TraG YP_001220273.1 61890 D 349163 CDS YP_001220274.1 148244036 5159323 complement(63838..64320) 1 NC_009469.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 64320 5159323 Acry_3532 Acidiphilium cryptum JF-5 AsnC family transcriptional regulator YP_001220274.1 63838 R 349163 CDS YP_001220275.1 148244037 5159338 64386..65438 1 NC_009469.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme, beta subunit 65438 5159338 Acry_3533 Acidiphilium cryptum JF-5 pyridoxal-5'-phosphate-dependent enzyme, beta subunit YP_001220275.1 64386 D 349163 CDS YP_001220276.1 148244038 5159311 65435..66604 1 NC_009469.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; amidohydrolase 66604 5159311 Acry_3534 Acidiphilium cryptum JF-5 amidohydrolase YP_001220276.1 65435 D 349163 CDS YP_001220277.1 148244039 5159294 66601..67914 1 NC_009469.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 67914 5159294 Acry_3535 Acidiphilium cryptum JF-5 allantoate amidohydrolase YP_001220277.1 66601 D 349163 CDS YP_001220278.1 148244040 5159287 complement(68011..69267) 1 NC_009469.1 PFAM: UMUC domain protein DNA-repair protein; DNA-repair protein 69267 5159287 Acry_3536 Acidiphilium cryptum JF-5 DNA-repair protein YP_001220278.1 68011 R 349163 CDS YP_001220279.1 148244041 5159331 complement(69273..69662) 1 NC_009469.1 hypothetical protein 69662 5159331 Acry_3537 Acidiphilium cryptum JF-5 hypothetical protein YP_001220279.1 69273 R 349163 CDS YP_001220280.1 148244042 5159286 69707..70417 1 NC_009469.1 PFAM: protein of unknown function DUF159; hypothetical protein 70417 5159286 Acry_3538 Acidiphilium cryptum JF-5 hypothetical protein YP_001220280.1 69707 D 349163 CDS YP_001220281.1 148244043 5159285 complement(71277..72293) 1 NC_009469.1 hypothetical protein 72293 5159285 Acry_3539 Acidiphilium cryptum JF-5 hypothetical protein YP_001220281.1 71277 R 349163 CDS YP_001220282.1 148244044 5159308 72734..73360 1 NC_009469.1 hypothetical protein 73360 5159308 Acry_3540 Acidiphilium cryptum JF-5 hypothetical protein YP_001220282.1 72734 D 349163 CDS YP_001220283.1 148244045 5159310 complement(73588..75783) 1 NC_009469.1 TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; RecD/TraA family helicase 75783 5159310 Acry_3541 Acidiphilium cryptum JF-5 RecD/TraA family helicase YP_001220283.1 73588 R 349163 CDS YP_001220284.1 148244046 5159295 complement(76117..81168) 1 NC_009469.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 81168 5159295 Acry_3542 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001220284.1 76117 R 349163 CDS YP_001220285.1 148244047 5159278 complement(81216..81554) 1 NC_009469.1 hypothetical protein 81554 5159278 Acry_3543 Acidiphilium cryptum JF-5 hypothetical protein YP_001220285.1 81216 R 349163 CDS YP_001220286.1 148244048 5159318 81761..82492 1 NC_009469.1 hypothetical protein 82492 5159318 Acry_3544 Acidiphilium cryptum JF-5 hypothetical protein YP_001220286.1 81761 D 349163 CDS YP_001220287.1 148244049 5159282 82502..83392 1 NC_009469.1 hypothetical protein 83392 5159282 Acry_3545 Acidiphilium cryptum JF-5 hypothetical protein YP_001220287.1 82502 D 349163 CDS YP_001220288.1 148244050 5159279 83629..84093 1 NC_009469.1 hypothetical protein 84093 5159279 Acry_3546 Acidiphilium cryptum JF-5 hypothetical protein YP_001220288.1 83629 D 349163 CDS YP_001220289.1 148244051 5159277 84098..84418 1 NC_009469.1 hypothetical protein 84418 5159277 Acry_3547 Acidiphilium cryptum JF-5 hypothetical protein YP_001220289.1 84098 D 349163 CDS YP_001220290.1 148244052 5159280 complement(84795..85472) 1 NC_009469.1 hypothetical protein 85472 5159280 Acry_3548 Acidiphilium cryptum JF-5 hypothetical protein YP_001220290.1 84795 R 349163 CDS YP_001220291.1 148244053 5159283 complement(85472..86161) 1 NC_009469.1 hypothetical protein 86161 5159283 Acry_3549 Acidiphilium cryptum JF-5 hypothetical protein YP_001220291.1 85472 R 349163 CDS YP_001220292.1 148244054 5159284 complement(87820..88932) 1 NC_009469.1 TIGRFAM: CitB domain protein; CitB domain-containing protein 88932 5159284 Acry_3552 Acidiphilium cryptum JF-5 CitB domain-containing protein YP_001220292.1 87820 R 349163 CDS YP_001220293.1 148244056 5159381 complement(838..1383) 1 NC_009470.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; resolvase domain-containing protein 1383 5159381 Acry_3553 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220293.1 838 R 349163 CDS YP_001220294.1 148244057 5159390 2471..2728 1 NC_009470.1 hypothetical protein 2728 5159390 Acry_3554 Acidiphilium cryptum JF-5 hypothetical protein YP_001220294.1 2471 D 349163 CDS YP_001220295.1 148244058 5159358 complement(2934..3404) 1 NC_009470.1 PFAM: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase 3404 5159358 Acry_3555 Acidiphilium cryptum JF-5 GCN5-related N-acetyltransferase YP_001220295.1 2934 R 349163 CDS YP_001220296.1 148244059 5159370 complement(4269..4682) 1 NC_009470.1 hypothetical protein 4682 5159370 Acry_3556 Acidiphilium cryptum JF-5 hypothetical protein YP_001220296.1 4269 R 349163 CDS YP_001220297.1 148244060 5159359 complement(4667..6574) 1 NC_009470.1 PFAM: Relaxase/mobilization nuclease family protein; relaxase/mobilization nuclease family protein 6574 5159359 Acry_3557 Acidiphilium cryptum JF-5 relaxase/mobilization nuclease family protein YP_001220297.1 4667 R 349163 CDS YP_001220298.1 148244061 5159364 6658..6939 1 NC_009470.1 hypothetical protein 6939 5159364 Acry_3558 Acidiphilium cryptum JF-5 hypothetical protein YP_001220298.1 6658 D 349163 CDS YP_001220299.1 148244062 5159369 7053..7466 1 NC_009470.1 hypothetical protein 7466 5159369 Acry_3559 Acidiphilium cryptum JF-5 hypothetical protein YP_001220299.1 7053 D 349163 CDS YP_001220300.1 148244063 5159360 7483..9297 1 NC_009470.1 Type IV secretory pathway VirD4 components-like protein 9297 5159360 Acry_3560 Acidiphilium cryptum JF-5 Type IV secretory pathway VirD4 components-like protein YP_001220300.1 7483 D 349163 CDS YP_001220301.1 148244064 5159365 9281..9850 1 NC_009470.1 hypothetical protein 9850 5159365 Acry_3561 Acidiphilium cryptum JF-5 hypothetical protein YP_001220301.1 9281 D 349163 CDS YP_001220302.1 148244065 5159366 10080..10706 1 NC_009470.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 10706 5159366 Acry_3562 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220302.1 10080 D 349163 CDS YP_001220303.1 148244066 5159362 complement(10734..11249) 1 NC_009470.1 PFAM: protein of unknown function DUF156; hypothetical protein 11249 5159362 Acry_3563 Acidiphilium cryptum JF-5 hypothetical protein YP_001220303.1 10734 R 349163 CDS YP_001220304.1 148244067 5159361 11540..12913 1 NC_009470.1 PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 12913 5159361 Acry_3564 Acidiphilium cryptum JF-5 natural resistance-associated macrophage protein YP_001220304.1 11540 D 349163 CDS YP_001220305.1 148244068 5159382 12941..13237 1 NC_009470.1 hypothetical protein 13237 5159382 Acry_3565 Acidiphilium cryptum JF-5 hypothetical protein YP_001220305.1 12941 D 349163 CDS YP_001220306.1 148244069 5159380 13258..13974 1 NC_009470.1 PFAM: MgtC/SapB transporter; MgtC/SapB transporter 13974 5159380 Acry_3566 Acidiphilium cryptum JF-5 MgtC/SapB transporter YP_001220306.1 13258 D 349163 CDS YP_001220307.1 148244070 5159374 14027..16660 1 NC_009470.1 PFAM: transposase Tn3 family protein; transposase Tn3 family protein 16660 5159374 Acry_3567 Acidiphilium cryptum JF-5 transposase Tn3 family protein YP_001220307.1 14027 D 349163 CDS YP_001220308.1 148244071 5159367 complement(16679..19669) 1 NC_009470.1 PFAM: transposase Tn3 family protein; transposase Tn3 family protein 19669 5159367 Acry_3568 Acidiphilium cryptum JF-5 transposase Tn3 family protein YP_001220308.1 16679 R 349163 CDS YP_001220309.1 148244072 5159373 complement(19769..20977) 1 NC_009470.1 PFAM: transposase, mutator type; transposase, mutator type 20977 5159373 Acry_3569 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220309.1 19769 R 349163 CDS YP_001220310.1 148244073 5159372 complement(21120..21713) 1 NC_009470.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 21713 5159372 Acry_3570 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220310.1 21120 R 349163 CDS YP_001220311.1 148244074 5159377 22457..22942 1 NC_009470.1 hypothetical protein 22942 5159377 Acry_3572 Acidiphilium cryptum JF-5 hypothetical protein YP_001220311.1 22457 D 349163 CDS YP_001220312.1 148244075 5159386 22936..23262 1 NC_009470.1 hypothetical protein 23262 5159386 Acry_3573 Acidiphilium cryptum JF-5 hypothetical protein YP_001220312.1 22936 D 349163 CDS YP_001220313.1 148244076 5159375 23270..24100 1 NC_009470.1 hypothetical protein 24100 5159375 Acry_3574 Acidiphilium cryptum JF-5 hypothetical protein YP_001220313.1 23270 D 349163 CDS YP_001220314.1 148244077 5159383 24356..25762 1 NC_009470.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 25762 5159383 Acry_3575 Acidiphilium cryptum JF-5 IS605 family transposase OrfB YP_001220314.1 24356 D 349163 CDS YP_001220315.1 148244078 5159384 complement(25913..26179) 1 NC_009470.1 hypothetical protein 26179 5159384 Acry_3576 Acidiphilium cryptum JF-5 hypothetical protein YP_001220315.1 25913 R 349163 CDS YP_001220316.1 148244079 5159379 complement(26565..27131) 1 NC_009470.1 hypothetical protein 27131 5159379 Acry_3577 Acidiphilium cryptum JF-5 hypothetical protein YP_001220316.1 26565 R 349163 CDS YP_001220317.1 148244080 5159363 complement(27154..28509) 1 NC_009470.1 PFAM: replication protein C; replication protein C 28509 5159363 Acry_3578 Acidiphilium cryptum JF-5 replication protein C YP_001220317.1 27154 R 349163 CDS YP_001220318.1 148244081 5159371 29311..29994 1 NC_009470.1 ATPase involved in chromosome partitioning-like protein 29994 5159371 Acry_3579 Acidiphilium cryptum JF-5 ATPase involved in chromosome partitioning-like protein YP_001220318.1 29311 D 349163 CDS YP_001220319.1 148244082 5159389 30434..31087 1 NC_009470.1 hypothetical protein 31087 5159389 Acry_3580 Acidiphilium cryptum JF-5 hypothetical protein YP_001220319.1 30434 D 349163 CDS YP_001220320.1 148244083 5159385 complement(31098..32336) 1 NC_009470.1 hypothetical protein 32336 5159385 Acry_3581 Acidiphilium cryptum JF-5 hypothetical protein YP_001220320.1 31098 R 349163 CDS YP_001220321.1 148244084 5159387 complement(32323..32787) 1 NC_009470.1 PFAM: DNA mismatch endonuclease vsr; DNA mismatch endonuclease vsr 32787 5159387 Acry_3582 Acidiphilium cryptum JF-5 DNA mismatch endonuclease vsr YP_001220321.1 32323 R 349163 CDS YP_001220322.1 148244085 5159378 complement(32780..34243) 1 NC_009470.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 34243 5159378 Acry_3583 Acidiphilium cryptum JF-5 DNA-cytosine methyltransferase YP_001220322.1 32780 R 349163 CDS YP_001220323.1 148244086 5159368 34246..35343 1 NC_009470.1 hypothetical protein 35343 5159368 Acry_3584 Acidiphilium cryptum JF-5 hypothetical protein YP_001220323.1 34246 D 349163 CDS YP_001220324.1 148244087 5159388 complement(35674..36135) 1 NC_009470.1 hypothetical protein 36135 5159388 Acry_3585 Acidiphilium cryptum JF-5 hypothetical protein YP_001220324.1 35674 R 349163 CDS YP_001220325.1 148244089 5159405 complement(525..5624) 1 NC_009471.1 exonuclease V subunit alpha 5624 5159405 Acry_3587 Acidiphilium cryptum JF-5 exonuclease V subunit alpha YP_001220325.1 525 R 349163 CDS YP_001220326.1 148244090 5159406 complement(5624..5956) 1 NC_009471.1 hypothetical protein 5956 5159406 Acry_3588 Acidiphilium cryptum JF-5 hypothetical protein YP_001220326.1 5624 R 349163 CDS YP_001220327.1 148244091 5159421 6694..7419 1 NC_009471.1 hypothetical protein 7419 5159421 Acry_3589 Acidiphilium cryptum JF-5 hypothetical protein YP_001220327.1 6694 D 349163 CDS YP_001220328.1 148244092 5159422 7583..7861 1 NC_009471.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 7861 5159422 Acry_3590 Acidiphilium cryptum JF-5 plasmid stabilization system protein YP_001220328.1 7583 D 349163 CDS YP_001220329.1 148244093 5159420 8654..9310 1 NC_009471.1 PFAM: protein of unknown function DUF1555; hypothetical protein 9310 5159420 Acry_3591 Acidiphilium cryptum JF-5 hypothetical protein YP_001220329.1 8654 D 349163 CDS YP_001220330.1 148244094 5159418 complement(10449..10988) 1 NC_009471.1 hypothetical protein 10988 5159418 Acry_3592 Acidiphilium cryptum JF-5 hypothetical protein YP_001220330.1 10449 R 349163 CDS YP_001220331.1 148244095 5159398 11355..12896 1 NC_009471.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 12896 5159398 Acry_3593 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001220331.1 11355 D 349163 CDS YP_001220332.1 148244096 5159409 12908..13660 1 NC_009471.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 13660 5159409 Acry_3594 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001220332.1 12908 D 349163 CDS YP_001220333.1 148244097 5159400 13772..14719 1 NC_009471.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 14719 5159400 Acry_3595 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001220333.1 13772 D 349163 CDS YP_001220334.1 148244098 5159417 complement(14884..15282) 1 NC_009471.1 hypothetical protein 15282 5159417 Acry_3596 Acidiphilium cryptum JF-5 hypothetical protein YP_001220334.1 14884 R 349163 CDS YP_001220335.1 148244099 5159419 complement(15369..15755) 1 NC_009471.1 transposase 15755 5159419 Acry_3597 Acidiphilium cryptum JF-5 transposase YP_001220335.1 15369 R 349163 CDS YP_001220336.1 148244100 5159407 complement(16045..16371) 1 NC_009471.1 PFAM: PemK family protein; transcriptional modulator of MazE/toxin, MazF 16371 5159407 Acry_3598 Acidiphilium cryptum JF-5 transcriptional modulator of MazE/toxin, MazF YP_001220336.1 16045 R 349163 CDS YP_001220337.1 148244101 5159401 complement(16371..16634) 1 NC_009471.1 PFAM: SpoVT/AbrB domain protein; transcriptional regulator/antitoxin, MazE 16634 5159401 Acry_3599 Acidiphilium cryptum JF-5 transcriptional regulator/antitoxin, MazE YP_001220337.1 16371 R 349163 CDS YP_001220338.1 148244102 5159414 16863..17522 1 NC_009471.1 ATPase involved in chromosome partitioning-like protein 17522 5159414 Acry_3600 Acidiphilium cryptum JF-5 ATPase involved in chromosome partitioning-like protein YP_001220338.1 16863 D 349163 CDS YP_001220339.1 148244103 5159415 17537..17812 1 NC_009471.1 hypothetical protein 17812 5159415 Acry_3601 Acidiphilium cryptum JF-5 hypothetical protein YP_001220339.1 17537 D 349163 CDS YP_001220340.1 148244104 5159404 19545..19934 1 NC_009471.1 Type IV secretory pathway VirD4 components-like protein 19934 5159404 Acry_3603 Acidiphilium cryptum JF-5 Type IV secretory pathway VirD4 components-like protein YP_001220340.1 19545 D 349163 CDS YP_001220341.1 148244105 5159402 complement(20298..23288) 1 NC_009471.1 PFAM: transposase Tn3 family protein; transposase Tn3 family protein 23288 5159402 Acry_3605 Acidiphilium cryptum JF-5 transposase Tn3 family protein YP_001220341.1 20298 R 349163 CDS YP_001220342.1 148244106 5159411 complement(23227..23886) 1 NC_009471.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 23886 5159411 Acry_3606 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001220342.1 23227 R 349163 CDS YP_001220343.1 148244107 5159410 24319..25728 1 NC_009471.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 25728 5159410 Acry_3608 Acidiphilium cryptum JF-5 general substrate transporter YP_001220343.1 24319 D 349163 CDS YP_001220344.1 148244108 5159391 26128..28587 1 NC_009471.1 PFAM: TonB-dependent receptor; TonB-dependent receptor 28587 5159391 Acry_3609 Acidiphilium cryptum JF-5 TonB-dependent receptor YP_001220344.1 26128 D 349163 CDS YP_001220345.1 148244109 5159396 28668..29333 1 NC_009471.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 29333 5159396 Acry_3610 Acidiphilium cryptum JF-5 MotA/TolQ/ExbB proton channel YP_001220345.1 28668 D 349163 CDS YP_001220346.1 148244110 5159413 29380..29670 1 NC_009471.1 hypothetical protein 29670 5159413 Acry_3611 Acidiphilium cryptum JF-5 hypothetical protein YP_001220346.1 29380 D 349163 CDS YP_001220347.1 148244111 5159394 30222..31430 1 NC_009471.1 PFAM: transposase, mutator type; transposase, mutator type 31430 5159394 Acry_3612 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220347.1 30222 D 349163 CDS YP_001220348.1 148244112 5159412 31513..32640 1 NC_009471.1 PFAM: transposase, mutator type; transposase, mutator type 32640 5159412 Acry_3613 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220348.1 31513 D 349163 CDS YP_001220349.1 148244113 5159395 complement(32743..33822) 1 NC_009471.1 transposase 33822 5159395 Acry_3614 Acidiphilium cryptum JF-5 transposase YP_001220349.1 32743 R 349163 CDS YP_001220350.1 148244114 5159403 complement(33928..35151) 1 NC_009471.1 PFAM: transposase, mutator type; transposase, mutator type 35151 5159403 Acry_3615 Acidiphilium cryptum JF-5 transposase, mutator type YP_001220350.1 33928 R 349163 CDS YP_001220351.1 148244115 5159397 35342..35629 1 NC_009471.1 transposase 35629 5159397 Acry_3616 Acidiphilium cryptum JF-5 transposase YP_001220351.1 35342 D 349163 CDS YP_001220352.1 148244116 5159392 35908..37095 1 NC_009471.1 hypothetical protein 37095 5159392 Acry_3617 Acidiphilium cryptum JF-5 hypothetical protein YP_001220352.1 35908 D 349163 CDS YP_001220353.1 148244118 5159427 complement(66..407) 1 NC_009472.1 hypothetical protein 407 5159427 Acry_3618 Acidiphilium cryptum JF-5 hypothetical protein YP_001220353.1 66 R 349163 CDS YP_001220354.1 148244119 5159425 complement(1194..4442) 1 NC_009472.1 exonuclease V subunit alpha 4442 5159425 Acry_3619 Acidiphilium cryptum JF-5 exonuclease V subunit alpha YP_001220354.1 1194 R 349163 CDS YP_001220355.1 148244120 5159431 4766..5308 1 NC_009472.1 hypothetical protein 5308 5159431 Acry_3620 Acidiphilium cryptum JF-5 hypothetical protein YP_001220355.1 4766 D 349163 CDS YP_001220356.1 148244121 5159432 complement(6671..6925) 1 NC_009472.1 hypothetical protein 6925 5159432 Acry_3622 Acidiphilium cryptum JF-5 hypothetical protein YP_001220356.1 6671 R 349163 CDS YP_001220357.1 148244122 5159428 complement(7238..7528) 1 NC_009472.1 hypothetical protein 7528 5159428 Acry_3623 Acidiphilium cryptum JF-5 hypothetical protein YP_001220357.1 7238 R 349163 CDS YP_001220358.1 148244123 5159426 complement(7506..7745) 1 NC_009472.1 hypothetical protein 7745 5159426 Acry_3624 Acidiphilium cryptum JF-5 hypothetical protein YP_001220358.1 7506 R 349163 CDS YP_001220359.1 148244124 5159430 complement(7746..8192) 1 NC_009472.1 PFAM: protein of unknown function DUF29; hypothetical protein 8192 5159430 Acry_3625 Acidiphilium cryptum JF-5 hypothetical protein YP_001220359.1 7746 R 349163 CDS YP_001220360.1 148244125 5159423 complement(8189..8389) 1 NC_009472.1 hypothetical protein 8389 5159423 Acry_3626 Acidiphilium cryptum JF-5 hypothetical protein YP_001220360.1 8189 R 349163 CDS YP_001220361.1 148244126 5159429 complement(8370..8681) 1 NC_009472.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 8681 5159429 Acry_3627 Acidiphilium cryptum JF-5 plasmid stabilization system protein YP_001220361.1 8370 R 349163 CDS YP_001220362.1 148244128 5159434 complement(897..1094) 1 NC_009473.1 hypothetical protein 1094 5159434 Acry_3628 Acidiphilium cryptum JF-5 hypothetical protein YP_001220362.1 897 R 349163 CDS YP_001220363.1 148244129 5159436 complement(2806..3369) 1 NC_009473.1 hypothetical protein 3369 5159436 Acry_3629 Acidiphilium cryptum JF-5 hypothetical protein YP_001220363.1 2806 R 349163 CDS YP_001220364.1 148244130 5159435 complement(3371..4456) 1 NC_009473.1 PFAM: MobA/MobL protein; MobA/MobL protein 4456 5159435 Acry_3630 Acidiphilium cryptum JF-5 MobA/MobL protein YP_001220364.1 3371 R 349163 CDS YP_001220365.1 148244131 5159437 4650..4973 1 NC_009473.1 hypothetical protein 4973 5159437 Acry_3631 Acidiphilium cryptum JF-5 hypothetical protein YP_001220365.1 4650 D 349163 CDS YP_001220366.1 148244132 5159433 5065..5613 1 NC_009473.1 hypothetical protein 5613 5159433 Acry_3632 Acidiphilium cryptum JF-5 hypothetical protein YP_001220366.1 5065 D 349163 CDS YP_001220367.1 148244134 5159440 1120..1605 1 NC_009474.1 hypothetical protein 1605 5159440 Acry_3633 Acidiphilium cryptum JF-5 hypothetical protein YP_001220367.1 1120 D 349163 CDS YP_001220368.1 148244135 5159443 1770..2378 1 NC_009474.1 hypothetical protein 2378 5159443 Acry_3634 Acidiphilium cryptum JF-5 hypothetical protein YP_001220368.1 1770 D 349163 CDS YP_001220369.1 148244136 5159439 complement(3385..3825) 1 NC_009474.1 PFAM: protein of unknown function DUF29; hypothetical protein 3825 5159439 Acry_3636 Acidiphilium cryptum JF-5 hypothetical protein YP_001220369.1 3385 R 349163 CDS YP_001220370.1 148244137 5159438 complement(3839..4234) 1 NC_009474.1 hypothetical protein 4234 5159438 Acry_3637 Acidiphilium cryptum JF-5 hypothetical protein YP_001220370.1 3839 R 349163 CDS YP_001220371.1 148244138 5159441 complement(4247..4822) 1 NC_009474.1 hypothetical protein 4822 5159441 Acry_3638 Acidiphilium cryptum JF-5 hypothetical protein YP_001220371.1 4247 R 349163 CDS YP_001233149.1 148259022 5160411 261..1709 1 NC_009484.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1709 dnaA 5160411 dnaA Acidiphilium cryptum JF-5 chromosomal replication initiation protein YP_001233149.1 261 D 349163 CDS YP_001233150.1 148259023 5159944 complement(1737..2588) 1 NC_009484.1 PFAM: putative esterase; carboxylesterase 2588 5159944 Acry_0002 Acidiphilium cryptum JF-5 carboxylesterase YP_001233150.1 1737 R 349163 CDS YP_001233151.1 148259024 5159945 2902..3105 1 NC_009484.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3105 5159945 Acry_0003 Acidiphilium cryptum JF-5 cold-shock DNA-binding domain-containing protein YP_001233151.1 2902 D 349163 CDS YP_001233152.1 148259025 5161105 3693..4202 1 NC_009484.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 4202 5161105 Acry_0004 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001233152.1 3693 D 349163 CDS YP_001233153.1 148259026 5161106 4227..5363 1 NC_009484.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 5363 5161106 Acry_0005 Acidiphilium cryptum JF-5 acetyl-CoA acetyltransferase YP_001233153.1 4227 D 349163 CDS YP_001233154.1 148259027 5161158 5363..7723 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 7723 5161158 Acry_0006 Acidiphilium cryptum JF-5 NAD-binding 3-hydroxyacyl-CoA dehydrogenase YP_001233154.1 5363 D 349163 CDS YP_001233155.1 148259028 5161159 7746..9536 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 9536 5161159 Acry_0007 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001233155.1 7746 D 349163 CDS YP_001233156.1 148259029 5160886 complement(9556..10113) 1 NC_009484.1 PFAM: PEBP family protein; PEBP family protein 10113 5160886 Acry_0008 Acidiphilium cryptum JF-5 PEBP family protein YP_001233156.1 9556 R 349163 CDS YP_001233157.1 148259030 5160887 complement(10125..10877) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 10877 5160887 Acry_0009 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001233157.1 10125 R 349163 CDS YP_001233158.1 148259031 5159584 complement(10874..11788) 1 NC_009484.1 ABC-type molybdate transport system periplasmic component-like protein 11788 5159584 Acry_0010 Acidiphilium cryptum JF-5 ABC-type molybdate transport system periplasmic component-like protein YP_001233158.1 10874 R 349163 CDS YP_001233159.1 148259032 5159585 11903..12280 1 NC_009484.1 PFAM: regulatory protein, LysR; ModE family transcriptional regulator 12280 5159585 Acry_0011 Acidiphilium cryptum JF-5 ModE family transcriptional regulator YP_001233159.1 11903 D 349163 CDS YP_001233160.1 148259033 5159816 12360..12881 1 NC_009484.1 PFAM: TspO/MBR family protein; TspO and MBR like protein 12881 5159816 Acry_0012 Acidiphilium cryptum JF-5 TspO and MBR like protein YP_001233160.1 12360 D 349163 CDS YP_001233161.1 148259034 5159817 12925..13539 1 NC_009484.1 hypothetical protein 13539 5159817 Acry_0013 Acidiphilium cryptum JF-5 hypothetical protein YP_001233161.1 12925 D 349163 CDS YP_001233162.1 148259035 5160037 13684..14235 1 NC_009484.1 PFAM: GPR1/FUN34/yaaH family protein; GPR1/FUN34/yaaH family protein 14235 5160037 Acry_0014 Acidiphilium cryptum JF-5 GPR1/FUN34/yaaH family protein YP_001233162.1 13684 D 349163 CDS YP_001233163.1 148259036 5160038 14489..14716 1 NC_009484.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 14716 5160038 Acry_0015 Acidiphilium cryptum JF-5 twin arginine-targeting protein translocase YP_001233163.1 14489 D 349163 CDS YP_001233164.1 148259037 5160257 14727..14984 1 NC_009484.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 14984 5160257 Acry_0016 Acidiphilium cryptum JF-5 twin arginine-targeting protein translocase YP_001233164.1 14727 D 349163 CDS YP_001233165.1 148259038 5160258 15001..15642 1 NC_009484.1 catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase 15642 5160258 Acry_0017 Acidiphilium cryptum JF-5 methylthioribulose-1-phosphate dehydratase YP_001233165.1 15001 D 349163 CDS YP_001233166.1 148259039 5162565 15639..16181 1 NC_009484.1 PFAM: Acireductone dioxygenase, ARD; acireductone dioxygenase 16181 5162565 Acry_0018 Acidiphilium cryptum JF-5 acireductone dioxygenase YP_001233166.1 15639 D 349163 CDS YP_001233167.1 148259040 5162566 16198..16896 1 NC_009484.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 16896 5162566 Acry_0019 Acidiphilium cryptum JF-5 2,3-diketo-5-methylthio-1-phosphopentane phosphatase YP_001233167.1 16198 D 349163 CDS YP_001233168.1 148259041 5162439 16908..18437 1 NC_009484.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 18437 5162439 Acry_0020 Acidiphilium cryptum JF-5 apolipoprotein N-acyltransferase YP_001233168.1 16908 D 349163 CDS YP_001233169.1 148259042 5162440 18742..19227 1 NC_009484.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 19227 5162440 Acry_0021 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001233169.1 18742 D 349163 CDS YP_001233170.1 148259043 5159738 19292..19963 1 NC_009484.1 PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 19963 5159738 Acry_0022 Acidiphilium cryptum JF-5 ribulose-phosphate 3-epimerase YP_001233170.1 19292 D 349163 CDS YP_001233171.1 148259044 5159739 19977..21551 1 NC_009484.1 PFAM: Heparinase II/III family protein; heparinase II/III family protein 21551 5159739 Acry_0023 Acidiphilium cryptum JF-5 heparinase II/III family protein YP_001233171.1 19977 D 349163 CDS YP_001233172.1 148259045 5160055 21556..22554 1 NC_009484.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; UDP-glucose 4-epimerase 22554 5160055 Acry_0024 Acidiphilium cryptum JF-5 UDP-glucose 4-epimerase YP_001233172.1 21556 D 349163 CDS YP_001233173.1 148259046 5160056 22562..23686 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 23686 5160056 Acry_0025 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233173.1 22562 D 349163 CDS YP_001233174.1 148259047 5160621 23698..24165 1 NC_009484.1 PFAM: CreA family protein; CreA family protein 24165 5160621 Acry_0026 Acidiphilium cryptum JF-5 CreA family protein YP_001233174.1 23698 D 349163 CDS YP_001233175.1 148259048 5160622 24181..25722 1 NC_009484.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 25722 purH 5160622 purH Acidiphilium cryptum JF-5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001233175.1 24181 D 349163 CDS YP_001233176.1 148259049 5159444 25728..26285 1 NC_009484.1 PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 26285 5159444 Acry_0028 Acidiphilium cryptum JF-5 carboxymuconolactone decarboxylase YP_001233176.1 25728 D 349163 CDS YP_001233177.1 148259050 5159445 complement(26325..28286) 1 NC_009484.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 28286 5159445 Acry_0029 Acidiphilium cryptum JF-5 DNA topoisomerase IV subunit B YP_001233177.1 26325 R 349163 CDS YP_001233178.1 148259051 5161080 complement(28312..28950) 1 NC_009484.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 28950 cmk 5161080 cmk Acidiphilium cryptum JF-5 cytidylate kinase YP_001233178.1 28312 R 349163 CDS YP_001233179.1 148259052 5161081 complement(28947..30284) 1 NC_009484.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 30284 5161081 Acry_0031 Acidiphilium cryptum JF-5 3-phosphoshikimate 1-carboxyvinyltransferase YP_001233179.1 28947 R 349163 CDS YP_001233180.1 148259053 5160752 30423..30746 1 NC_009484.1 hypothetical protein 30746 5160752 Acry_0032 Acidiphilium cryptum JF-5 hypothetical protein YP_001233180.1 30423 D 349163 CDS YP_001233181.1 148259054 5160753 complement(30796..31047) 1 NC_009484.1 hypothetical protein 31047 5160753 Acry_0033 Acidiphilium cryptum JF-5 hypothetical protein YP_001233181.1 30796 R 349163 CDS YP_001233182.1 148259055 5161386 31136..32365 1 NC_009484.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 32365 5161386 Acry_0034 Acidiphilium cryptum JF-5 L-carnitine dehydratase/bile acid-inducible protein F YP_001233182.1 31136 D 349163 CDS YP_001233183.1 148259056 5161387 32380..33219 1 NC_009484.1 hypothetical protein 33219 5161387 Acry_0035 Acidiphilium cryptum JF-5 hypothetical protein YP_001233183.1 32380 D 349163 CDS YP_001233184.1 148259057 5161234 33219..34070 1 NC_009484.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; putative ribonuclease BN 34070 5161234 Acry_0036 Acidiphilium cryptum JF-5 putative ribonuclease BN YP_001233184.1 33219 D 349163 CDS YP_001233185.1 148259058 5161235 34256..36493 1 NC_009484.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; SMART: RNA binding S1 domain protein; ribonuclease R 36493 5161235 Acry_0037 Acidiphilium cryptum JF-5 ribonuclease R YP_001233185.1 34256 D 349163 CDS YP_001233186.1 148259059 5161498 36490..38094 1 NC_009484.1 PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase 38094 5161498 Acry_0038 Acidiphilium cryptum JF-5 C-terminal processing peptidase YP_001233186.1 36490 D 349163 CDS YP_001233187.1 148259060 5161499 38140..38307 1 NC_009484.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 38307 rpmG 5161499 rpmG Acidiphilium cryptum JF-5 50S ribosomal protein L33 YP_001233187.1 38140 D 349163 CDS YP_001233188.1 148259061 5162382 complement(38471..39610) 1 NC_009484.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase 39610 5162382 Acry_0040 Acidiphilium cryptum JF-5 lipid-A-disaccharide synthase YP_001233188.1 38471 R 349163 CDS YP_001233189.1 148259062 5162383 complement(39607..40482) 1 NC_009484.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 40482 5162383 Acry_0041 Acidiphilium cryptum JF-5 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001233189.1 39607 R 349163 CDS YP_001233190.1 148259063 5160641 complement(40479..41000) 1 NC_009484.1 hypothetical protein 41000 5160641 Acry_0042 Acidiphilium cryptum JF-5 hypothetical protein YP_001233190.1 40479 R 349163 CDS YP_001233191.1 148259064 5160642 complement(41089..42816) 1 NC_009484.1 PFAM: cytochrome c, class I; gluconate 2-dehydrogenase 42816 5160642 Acry_0043 Acidiphilium cryptum JF-5 gluconate 2-dehydrogenase YP_001233191.1 41089 R 349163 CDS YP_001233192.1 148259065 5161360 complement(43357..44583) 1 NC_009484.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 44583 5161360 Acry_0044 Acidiphilium cryptum JF-5 5-aminolevulinate synthase YP_001233192.1 43357 R 349163 CDS YP_001233193.1 148259066 5162270 complement(44723..45655) 1 NC_009484.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 45655 thyX 5162270 thyX Acidiphilium cryptum JF-5 FAD-dependent thymidylate synthase YP_001233193.1 44723 R 349163 CDS YP_001233194.1 148259067 5162041 complement(46354..46794) 1 NC_009484.1 hypothetical protein 46794 5162041 Acry_0046 Acidiphilium cryptum JF-5 hypothetical protein YP_001233194.1 46354 R 349163 CDS YP_001233195.1 148259068 5162042 complement(46791..47420) 1 NC_009484.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 47420 5162042 Acry_0047 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001233195.1 46791 R 349163 CDS YP_001233196.1 148259069 5159539 47474..48880 1 NC_009484.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; carbohydrate kinase 48880 5159539 Acry_0048 Acidiphilium cryptum JF-5 carbohydrate kinase YP_001233196.1 47474 D 349163 CDS YP_001233197.1 148259070 5159540 49470..50570 1 NC_009484.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 50570 5159540 Acry_0049 Acidiphilium cryptum JF-5 glycine cleavage system T protein YP_001233197.1 49470 D 349163 CDS YP_001233198.1 148259071 5160404 50582..50956 1 NC_009484.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system H protein 50956 5160404 Acry_0050 Acidiphilium cryptum JF-5 glycine cleavage system H protein YP_001233198.1 50582 D 349163 CDS YP_001233199.1 148259072 5160405 50971..53853 1 NC_009484.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 53853 5160405 Acry_0051 Acidiphilium cryptum JF-5 glycine dehydrogenase YP_001233199.1 50971 D 349163 CDS YP_001233200.1 148259073 5159592 53949..54524 1 NC_009484.1 PFAM: Lipocalin family protein; lipocalin family protein 54524 5159592 Acry_0052 Acidiphilium cryptum JF-5 lipocalin family protein YP_001233200.1 53949 D 349163 CDS YP_001233201.1 148259074 5159593 54608..56350 1 NC_009484.1 PFAM: peptidase S49; acid phosphatase 56350 5159593 Acry_0053 Acidiphilium cryptum JF-5 acid phosphatase YP_001233201.1 54608 D 349163 CDS YP_001233202.1 148259075 5160336 56586..57107 1 NC_009484.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 57107 5160336 Acry_0054 Acidiphilium cryptum JF-5 cell division protein MraZ YP_001233202.1 56586 D 349163 CDS YP_001233203.1 148259076 5160337 57104..58045 1 NC_009484.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 58045 mraW 5160337 mraW Acidiphilium cryptum JF-5 S-adenosyl-methyltransferase MraW YP_001233203.1 57104 D 349163 CDS YP_001233204.1 148259077 5160558 58042..58911 1 NC_009484.1 secreted (periplasmic) protein-like protein 58911 5160558 Acry_0056 Acidiphilium cryptum JF-5 secreted (periplasmic) protein-like protein YP_001233204.1 58042 D 349163 CDS YP_001233205.1 148259078 5160559 58908..60998 1 NC_009484.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 60998 5160559 Acry_0057 Acidiphilium cryptum JF-5 peptidoglycan glycosyltransferase YP_001233205.1 58908 D 349163 CDS YP_001233206.1 148259079 5160816 61003..62448 1 NC_009484.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 62448 murE 5160816 murE Acidiphilium cryptum JF-5 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001233206.1 61003 D 349163 CDS YP_001233207.1 148259080 5160817 62445..63800 1 NC_009484.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 63800 5160817 Acry_0059 Acidiphilium cryptum JF-5 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001233207.1 62445 D 349163 CDS YP_001233208.1 148259081 5160779 63800..64888 1 NC_009484.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 64888 mraY 5160779 mraY Acidiphilium cryptum JF-5 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001233208.1 63800 D 349163 CDS YP_001233209.1 148259082 5160780 64885..66270 1 NC_009484.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 66270 murD 5160780 murD Acidiphilium cryptum JF-5 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001233209.1 64885 D 349163 CDS YP_001233210.1 148259083 5159594 66270..67433 1 NC_009484.1 PFAM: cell cycle protein; cell cycle protein 67433 5159594 Acry_0062 Acidiphilium cryptum JF-5 cell cycle protein YP_001233210.1 66270 D 349163 CDS YP_001233211.1 148259084 5159595 67430..68536 1 NC_009484.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 68536 murG 5159595 murG Acidiphilium cryptum JF-5 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001233211.1 67430 D 349163 CDS YP_001233212.1 148259085 5160151 68533..69972 1 NC_009484.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 69972 murC 5160151 murC Acidiphilium cryptum JF-5 UDP-N-acetylmuramate--L-alanine ligase YP_001233212.1 68533 D 349163 CDS YP_001233213.1 148259086 5160152 69969..70898 1 NC_009484.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 70898 murB 5160152 murB Acidiphilium cryptum JF-5 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001233213.1 69969 D 349163 CDS YP_001233214.1 148259087 5162594 70895..71800 1 NC_009484.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 71800 ddl 5162594 ddl Acidiphilium cryptum JF-5 D-alanine--D-alanine ligase YP_001233214.1 70895 D 349163 CDS YP_001233215.1 148259088 5162595 71788..72666 1 NC_009484.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 72666 5162595 Acry_0067 Acidiphilium cryptum JF-5 polypeptide-transport-associated domain-containing protein YP_001233215.1 71788 D 349163 CDS YP_001233216.1 148259089 5162540 72674..73987 1 NC_009484.1 PFAM: cell division protein FtsA; cell division protein FtsA 73987 5162540 Acry_0068 Acidiphilium cryptum JF-5 cell division protein FtsA YP_001233216.1 72674 D 349163 CDS YP_001233217.1 148259090 5162541 74052..75620 1 NC_009484.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 75620 5162541 Acry_0069 Acidiphilium cryptum JF-5 cell division protein FtsZ YP_001233217.1 74052 D 349163 CDS YP_001233218.1 148259091 5162395 75755..76138 1 NC_009484.1 hypothetical protein 76138 5162395 Acry_0070 Acidiphilium cryptum JF-5 hypothetical protein YP_001233218.1 75755 D 349163 CDS YP_001233219.1 148259092 5162396 76201..78294 1 NC_009484.1 PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein 78294 5162396 Acry_0071 Acidiphilium cryptum JF-5 ComEC/Rec2-like protein YP_001233219.1 76201 D 349163 CDS YP_001233220.1 148259093 5161684 complement(78221..79246) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 79246 5161684 Acry_0072 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233220.1 78221 R 349163 CDS YP_001233221.1 148259094 5161685 complement(79236..80720) 1 NC_009484.1 PFAM: sugar transferase; sugar transferase 80720 5161685 Acry_0073 Acidiphilium cryptum JF-5 sugar transferase YP_001233221.1 79236 R 349163 CDS YP_001233222.1 148259095 5161970 complement(80774..81214) 1 NC_009484.1 PFAM: GtrA family protein; GtrA family protein 81214 5161970 Acry_0074 Acidiphilium cryptum JF-5 GtrA family protein YP_001233222.1 80774 R 349163 CDS YP_001233223.1 148259096 5161971 81403..81900 1 NC_009484.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 81900 5161971 Acry_0075 Acidiphilium cryptum JF-5 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001233223.1 81403 D 349163 CDS YP_001233224.1 148259097 5162097 81966..84371 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 84371 5162097 Acry_0076 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001233224.1 81966 D 349163 CDS YP_001233225.1 148259098 5162167 84384..85178 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; carbon-monoxide dehydrogenase 85178 5162167 Acry_0077 Acidiphilium cryptum JF-5 carbon-monoxide dehydrogenase YP_001233225.1 84384 D 349163 CDS YP_001233226.1 148259099 5162238 85538..86461 1 NC_009484.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 86461 5162238 Acry_0078 Acidiphilium cryptum JF-5 pyrroloquinoline quinone biosynthesis protein PqqB YP_001233226.1 85538 D 349163 CDS YP_001233227.1 148259100 5162239 86458..87198 1 NC_009484.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 87198 5162239 Acry_0079 Acidiphilium cryptum JF-5 pyrroloquinoline quinone biosynthesis protein PqqC YP_001233227.1 86458 D 349163 CDS YP_001233228.1 148259101 5162246 87195..87470 1 NC_009484.1 PFAM: coenzyme PQQ synthesis D; coenzyme PQQ synthesis D 87470 5162246 Acry_0080 Acidiphilium cryptum JF-5 coenzyme PQQ synthesis D YP_001233228.1 87195 D 349163 CDS YP_001233229.1 148259102 5161982 87467..88588 1 NC_009484.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 88588 5161982 Acry_0081 Acidiphilium cryptum JF-5 pyrroloquinoline quinone biosynthesis protein PqqE YP_001233229.1 87467 D 349163 CDS YP_001233230.1 148259103 5161983 complement(88570..89400) 1 NC_009484.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase 89400 5161983 Acry_0082 Acidiphilium cryptum JF-5 RNA methyltransferase YP_001233230.1 88570 R 349163 CDS YP_001233231.1 148259104 5161211 89808..90368 1 NC_009484.1 hypothetical protein 90368 5161211 Acry_0083 Acidiphilium cryptum JF-5 hypothetical protein YP_001233231.1 89808 D 349163 CDS YP_001233232.1 148259105 5161892 complement(90445..93444) 1 NC_009484.1 hypothetical protein 93444 5161892 Acry_0084 Acidiphilium cryptum JF-5 hypothetical protein YP_001233232.1 90445 R 349163 CDS YP_001233233.1 148259106 5161893 complement(93545..94156) 1 NC_009484.1 PFAM: isochorismatase hydrolase; nicotinamidase 94156 5161893 Acry_0085 Acidiphilium cryptum JF-5 nicotinamidase YP_001233233.1 93545 R 349163 CDS YP_001233234.1 148259107 5161927 94285..95037 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 95037 5161927 Acry_0086 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233234.1 94285 D 349163 CDS YP_001233235.1 148259108 5162016 95049..96830 1 NC_009484.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 96830 5162016 Acry_0087 Acidiphilium cryptum JF-5 dihydroxy-acid dehydratase YP_001233235.1 95049 D 349163 CDS YP_001233236.1 148259109 5162017 complement(96885..97679) 1 NC_009484.1 hypothetical protein 97679 5162017 Acry_0088 Acidiphilium cryptum JF-5 hypothetical protein YP_001233236.1 96885 R 349163 CDS YP_001233237.1 148259110 5161948 complement(97812..98225) 1 NC_009484.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; MerR family transcriptional regulator 98225 5161948 Acry_0089 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001233237.1 97812 R 349163 CDS YP_001233238.1 148259111 5162135 complement(98250..101312) 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 101312 5162135 Acry_0090 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001233238.1 98250 R 349163 CDS YP_001233239.1 148259112 5162136 complement(101322..102506) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 102506 5162136 Acry_0091 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001233239.1 101322 R 349163 CDS YP_001233240.1 148259113 5162137 complement(102503..104176) 1 NC_009484.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 104176 5162137 Acry_0092 Acidiphilium cryptum JF-5 RND efflux system outer membrane lipoprotein YP_001233240.1 102503 R 349163 CDS YP_001233241.1 148259114 5162221 104218..104907 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 104907 5162221 Acry_0093 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001233241.1 104218 D 349163 CDS YP_001233242.1 148259115 5162236 complement(104863..105732) 1 NC_009484.1 PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; PaaX family transcriptional regulator 105732 5162236 Acry_0094 Acidiphilium cryptum JF-5 PaaX family transcriptional regulator YP_001233242.1 104863 R 349163 CDS YP_001233243.1 148259116 5162237 complement(105939..106820) 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 106820 5162237 Acry_0095 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001233243.1 105939 R 349163 CDS YP_001233244.1 148259117 5160639 complement(107093..107329) 1 NC_009484.1 hypothetical protein 107329 5160639 Acry_0096 Acidiphilium cryptum JF-5 hypothetical protein YP_001233244.1 107093 R 349163 CDS YP_001233245.1 148259118 5162264 complement(107462..108439) 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 108439 5162264 Acry_0097 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001233245.1 107462 R 349163 CDS YP_001233246.1 148259119 5162265 108572..108994 1 NC_009484.1 transposase 108994 5162265 Acry_0098 Acidiphilium cryptum JF-5 transposase YP_001233246.1 108572 D 349163 CDS YP_001233247.1 148259120 5161264 109937..110284 1 NC_009484.1 hypothetical protein 110284 5161264 Acry_0100 Acidiphilium cryptum JF-5 hypothetical protein YP_001233247.1 109937 D 349163 CDS YP_001233248.1 148259121 5161821 110302..110688 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 110688 5161821 Acry_0101 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001233248.1 110302 D 349163 CDS YP_001233249.1 148259122 5161822 complement(110707..111912) 1 NC_009484.1 PFAM: aminotransferase, class I and II; class I and II aminotransferase 111912 5161822 Acry_0102 Acidiphilium cryptum JF-5 class I and II aminotransferase YP_001233249.1 110707 R 349163 CDS YP_001233250.1 148259123 5161817 complement(111944..114145) 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 114145 5161817 Acry_0103 Acidiphilium cryptum JF-5 hypothetical protein YP_001233250.1 111944 R 349163 CDS YP_001233251.1 148259124 5161832 complement(114138..114929) 1 NC_009484.1 PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 114929 5161832 Acry_0104 Acidiphilium cryptum JF-5 hypothetical protein YP_001233251.1 114138 R 349163 CDS YP_001233252.1 148259125 5161833 complement(114995..115867) 1 NC_009484.1 PFAM: protein of unknown function DUF1217; hypothetical protein 115867 5161833 Acry_0105 Acidiphilium cryptum JF-5 hypothetical protein YP_001233252.1 114995 R 349163 CDS YP_001233253.1 148259126 5161412 115953..116216 1 NC_009484.1 hypothetical protein 116216 5161412 Acry_0106 Acidiphilium cryptum JF-5 hypothetical protein YP_001233253.1 115953 D 349163 CDS YP_001233254.1 148259127 5161466 complement(116241..116639) 1 NC_009484.1 flagellar biosynthesis regulator FlbT-like protein 116639 5161466 Acry_0107 Acidiphilium cryptum JF-5 flagellar biosynthesis regulator FlbT-like protein YP_001233254.1 116241 R 349163 CDS YP_001233255.1 148259128 5161467 complement(116711..117595) 1 NC_009484.1 PFAM: flagellin domain protein; flagellin domain-containing protein 117595 5161467 Acry_0108 Acidiphilium cryptum JF-5 flagellin domain-containing protein YP_001233255.1 116711 R 349163 CDS YP_001233256.1 148259129 5161508 complement(118749..120206) 1 NC_009484.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar hook-associated protein FlgK 120206 5161508 Acry_0109 Acidiphilium cryptum JF-5 flagellar hook-associated protein FlgK YP_001233256.1 118749 R 349163 CDS YP_001233257.1 148259130 5160574 complement(120249..121526) 1 NC_009484.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 121526 flgE 5160574 flgE Acidiphilium cryptum JF-5 flagellar hook protein FlgE YP_001233257.1 120249 R 349163 CDS YP_001233258.1 148259131 5161299 complement(121659..122114) 1 NC_009484.1 hypothetical protein 122114 5161299 Acry_0111 Acidiphilium cryptum JF-5 hypothetical protein YP_001233258.1 121659 R 349163 CDS YP_001233259.1 148259132 5161300 122185..123468 1 NC_009484.1 hypothetical protein 123468 5161300 Acry_0112 Acidiphilium cryptum JF-5 hypothetical protein YP_001233259.1 122185 D 349163 CDS YP_001233260.1 148259133 5160762 123517..124278 1 NC_009484.1 PFAM: flagellar hook capping protein; flagellar hook capping protein 124278 5160762 Acry_0113 Acidiphilium cryptum JF-5 flagellar hook capping protein YP_001233260.1 123517 D 349163 CDS YP_001233261.1 148259134 5161140 complement(124372..125823) 1 NC_009484.1 hypothetical protein 125823 5161140 Acry_0114 Acidiphilium cryptum JF-5 hypothetical protein YP_001233261.1 124372 R 349163 CDS YP_001233262.1 148259135 5161141 complement(126107..127360) 1 NC_009484.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 127360 5161141 Acry_0115 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001233262.1 126107 R 349163 CDS YP_001233263.1 148259136 5161069 127815..129011 1 NC_009484.1 PFAM: ROK family protein; ROK family protein 129011 5161069 Acry_0116 Acidiphilium cryptum JF-5 ROK family protein YP_001233263.1 127815 D 349163 CDS YP_001233264.1 148259137 5161058 complement(129367..130599) 1 NC_009484.1 PFAM: amine oxidase; amine oxidase 130599 5161058 Acry_0117 Acidiphilium cryptum JF-5 amine oxidase YP_001233264.1 129367 R 349163 CDS YP_001233265.1 148259138 5161059 complement(130596..131468) 1 NC_009484.1 PFAM: Squalene/phytoene synthase; squalene/phytoene synthase 131468 5161059 Acry_0118 Acidiphilium cryptum JF-5 squalene/phytoene synthase YP_001233265.1 130596 R 349163 CDS YP_001233266.1 148259139 5160669 complement(131468..132304) 1 NC_009484.1 PFAM: Squalene/phytoene synthase; squalene/phytoene synthase 132304 5160669 Acry_0119 Acidiphilium cryptum JF-5 squalene/phytoene synthase YP_001233266.1 131468 R 349163 CDS YP_001233267.1 148259140 5159461 complement(132301..133428) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 133428 5159461 Acry_0120 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233267.1 132301 R 349163 CDS YP_001233268.1 148259141 5159462 complement(133425..134510) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 134510 5159462 Acry_0121 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001233268.1 133425 R 349163 CDS YP_001233269.1 148259142 5160931 134658..135707 1 NC_009484.1 hypothetical protein 135707 5160931 Acry_0122 Acidiphilium cryptum JF-5 hypothetical protein YP_001233269.1 134658 D 349163 CDS YP_001233270.1 148259143 5160961 135777..136031 1 NC_009484.1 PFAM: Transglycosylase-associated protein; transglycosylase-associated protein 136031 5160961 Acry_0123 Acidiphilium cryptum JF-5 transglycosylase-associated protein YP_001233270.1 135777 D 349163 CDS YP_001233271.1 148259144 5160962 136075..137256 1 NC_009484.1 PFAM: acyltransferase 3; acyltransferase 3 137256 5160962 Acry_0124 Acidiphilium cryptum JF-5 acyltransferase 3 YP_001233271.1 136075 D 349163 CDS YP_001233272.1 148259145 5160505 complement(137216..138400) 1 NC_009484.1 PFAM: HemY domain protein; HemY domain-containing protein 138400 5160505 Acry_0125 Acidiphilium cryptum JF-5 HemY domain-containing protein YP_001233272.1 137216 R 349163 CDS YP_001233273.1 148259146 5160436 complement(138400..139353) 1 NC_009484.1 hypothetical protein 139353 5160436 Acry_0126 Acidiphilium cryptum JF-5 hypothetical protein YP_001233273.1 138400 R 349163 CDS YP_001233274.1 148259147 5160345 complement(139350..140063) 1 NC_009484.1 PFAM: Uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 140063 5160345 Acry_0127 Acidiphilium cryptum JF-5 uroporphyrinogen III synthase HEM4 YP_001233274.1 139350 R 349163 CDS YP_001233275.1 148259148 5160346 complement(140056..141057) 1 NC_009484.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 141057 5160346 Acry_0128 Acidiphilium cryptum JF-5 porphobilinogen deaminase YP_001233275.1 140056 R 349163 CDS YP_001233276.1 148259149 5159936 141081..142172 1 NC_009484.1 TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease; metalloendopeptidase glycoprotease family 142172 5159936 Acry_0129 Acidiphilium cryptum JF-5 metalloendopeptidase glycoprotease family YP_001233276.1 141081 D 349163 CDS YP_001233277.1 148259150 5159512 142327..144843 1 NC_009484.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 144843 5159512 Acry_0130 Acidiphilium cryptum JF-5 glycogen/starch/alpha-glucan phosphorylase YP_001233277.1 142327 D 349163 CDS YP_001233278.1 148259151 5159513 144902..146173 1 NC_009484.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 146173 glgC 5159513 glgC Acidiphilium cryptum JF-5 glucose-1-phosphate adenylyltransferase YP_001233278.1 144902 D 349163 CDS YP_001233279.1 148259152 5159449 146176..147615 1 NC_009484.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 147615 5159449 Acry_0132 Acidiphilium cryptum JF-5 glycogen synthase YP_001233279.1 146176 D 349163 CDS YP_001233280.1 148259153 5160170 complement(147623..150715) 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 150715 5160170 Acry_0133 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001233280.1 147623 R 349163 CDS YP_001233281.1 148259154 5160171 complement(150719..153916) 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 153916 5160171 Acry_0134 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001233281.1 150719 R 349163 CDS YP_001233282.1 148259155 5160051 complement(153913..155073) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 155073 5160051 Acry_0135 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001233282.1 153913 R 349163 CDS YP_001233283.1 148259156 5159855 complement(155076..156584) 1 NC_009484.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 156584 5159855 Acry_0136 Acidiphilium cryptum JF-5 RND efflux system outer membrane lipoprotein YP_001233283.1 155076 R 349163 CDS YP_001233284.1 148259157 5159856 complement(156613..157167) 1 NC_009484.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 157167 5159856 Acry_0137 Acidiphilium cryptum JF-5 phosphoglycerate mutase YP_001233284.1 156613 R 349163 CDS YP_001233285.1 148259158 5159815 157294..157959 1 NC_009484.1 PFAM: import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 157959 5159815 Acry_0138 Acidiphilium cryptum JF-5 import inner membrane translocase subunit Tim44 YP_001233285.1 157294 D 349163 CDS YP_001233286.1 148259159 5159891 157963..159165 1 NC_009484.1 PFAM: MltA domain protein; 3D domain protein; MltA domain-containing protein 159165 5159891 Acry_0139 Acidiphilium cryptum JF-5 MltA domain-containing protein YP_001233286.1 157963 D 349163 CDS YP_001233287.1 148259160 5159892 159162..159953 1 NC_009484.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 159953 5159892 Acry_0140 Acidiphilium cryptum JF-5 hypothetical protein YP_001233287.1 159162 D 349163 CDS YP_001233288.1 148259161 5159877 159950..161842 1 NC_009484.1 PFAM: K+ potassium transporter; K+ potassium transporter 161842 5159877 Acry_0141 Acidiphilium cryptum JF-5 K+ potassium transporter YP_001233288.1 159950 D 349163 CDS YP_001233289.1 148259162 5159919 161848..162345 1 NC_009484.1 hypothetical protein 162345 5159919 Acry_0142 Acidiphilium cryptum JF-5 hypothetical protein YP_001233289.1 161848 D 349163 CDS YP_001233290.1 148259163 5159582 162327..162671 1 NC_009484.1 hypothetical protein 162671 5159582 Acry_0143 Acidiphilium cryptum JF-5 hypothetical protein YP_001233290.1 162327 D 349163 CDS YP_001233291.1 148259164 5159583 162788..165346 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 165346 5159583 Acry_0144 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001233291.1 162788 D 349163 CDS YP_001233292.1 148259165 5162559 165383..166282 1 NC_009484.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 166282 5162559 Acry_0145 Acidiphilium cryptum JF-5 hypothetical protein YP_001233292.1 165383 D 349163 CDS YP_001233293.1 148259166 5162084 complement(166351..167226) 1 NC_009484.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA dehydrogenase 167226 5162084 Acry_0146 Acidiphilium cryptum JF-5 3-hydroxybutyryl-CoA dehydrogenase YP_001233293.1 166351 R 349163 CDS YP_001233294.1 148259167 5162085 complement(167310..168245) 1 NC_009484.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 168245 5162085 Acry_0147 Acidiphilium cryptum JF-5 electron transfer flavoprotein subunit alpha YP_001233294.1 167310 R 349163 CDS YP_001233295.1 148259168 5162431 complement(168248..168997) 1 NC_009484.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 168997 5162431 Acry_0148 Acidiphilium cryptum JF-5 electron transfer flavoprotein subunit beta YP_001233295.1 168248 R 349163 CDS YP_001233296.1 148259169 5159837 complement(169102..172176) 1 NC_009484.1 hypothetical protein 172176 5159837 Acry_0149 Acidiphilium cryptum JF-5 hypothetical protein YP_001233296.1 169102 R 349163 CDS YP_001233297.1 148259170 5159838 172194..175103 1 NC_009484.1 PFAM: glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 175103 5159838 Acry_0150 Acidiphilium cryptum JF-5 (glutamate--ammonia-ligase) adenylyltransferase YP_001233297.1 172194 D 349163 CDS YP_001233298.1 148259171 5161939 175100..175573 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 175573 5161939 Acry_0151 Acidiphilium cryptum JF-5 alkyl hydroperoxide reductase YP_001233298.1 175100 D 349163 CDS YP_001233299.1 148259172 5162186 175669..176145 1 NC_009484.1 PFAM: Disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 176145 5162186 Acry_0152 Acidiphilium cryptum JF-5 disulfide bond formation protein DsbB YP_001233299.1 175669 D 349163 CDS YP_001233300.1 148259173 5162187 176142..176690 1 NC_009484.1 PFAM: Ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 176690 5162187 Acry_0153 Acidiphilium cryptum JF-5 ubiquinone biosynthesis protein COQ7 YP_001233300.1 176142 D 349163 CDS YP_001233301.1 148259174 5160179 176760..177413 1 NC_009484.1 hypothetical protein 177413 5160179 Acry_0154 Acidiphilium cryptum JF-5 hypothetical protein YP_001233301.1 176760 D 349163 CDS YP_001233302.1 148259175 5159459 177497..177970 1 NC_009484.1 TIGRFAM: phasin family protein; phasin family protein 177970 5159459 Acry_0155 Acidiphilium cryptum JF-5 phasin family protein YP_001233302.1 177497 D 349163 CDS YP_001233303.1 148259176 5159460 177999..180185 1 NC_009484.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 180185 5159460 Acry_0156 Acidiphilium cryptum JF-5 excinuclease ABC subunit B YP_001233303.1 177999 D 349163 CDS YP_001233304.1 148259177 5159511 180182..181009 1 NC_009484.1 hypothetical protein 181009 5159511 Acry_0157 Acidiphilium cryptum JF-5 hypothetical protein YP_001233304.1 180182 D 349163 CDS YP_001233305.1 148259178 5159576 complement(181110..181787) 1 NC_009484.1 hypothetical protein 181787 5159576 Acry_0158 Acidiphilium cryptum JF-5 hypothetical protein YP_001233305.1 181110 R 349163 CDS YP_001233306.1 148259179 5159447 182359..182802 1 NC_009484.1 hypothetical protein 182802 5159447 Acry_0159 Acidiphilium cryptum JF-5 hypothetical protein YP_001233306.1 182359 D 349163 CDS YP_001233307.1 148259180 5159448 182795..183283 1 NC_009484.1 hypothetical protein 183283 5159448 Acry_0160 Acidiphilium cryptum JF-5 hypothetical protein YP_001233307.1 182795 D 349163 CDS YP_001233308.1 148259181 5159561 183407..184510 1 NC_009484.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 184510 mtnA 5159561 mtnA Acidiphilium cryptum JF-5 methylthioribose-1-phosphate isomerase YP_001233308.1 183407 D 349163 CDS YP_001233309.1 148259182 5159806 184507..185319 1 NC_009484.1 hypothetical protein 185319 5159806 Acry_0162 Acidiphilium cryptum JF-5 hypothetical protein YP_001233309.1 184507 D 349163 CDS YP_001233310.1 148259183 5159807 185334..186668 1 NC_009484.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; recombination factor protein RarA 186668 5159807 Acry_0163 Acidiphilium cryptum JF-5 recombination factor protein RarA YP_001233310.1 185334 D 349163 CDS YP_001233311.1 148259184 5160372 186665..187639 1 NC_009484.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 187639 5160372 Acry_0164 Acidiphilium cryptum JF-5 RluA family pseudouridine synthase YP_001233311.1 186665 D 349163 CDS YP_001233312.1 148259185 5160911 187697..189640 1 NC_009484.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 189640 5160911 Acry_0165 Acidiphilium cryptum JF-5 surface antigen (D15) YP_001233312.1 187697 D 349163 CDS YP_001233313.1 148259186 5160912 189640..193599 1 NC_009484.1 PFAM: protein of unknown function DUF490; hypothetical protein 193599 5160912 Acry_0166 Acidiphilium cryptum JF-5 hypothetical protein YP_001233313.1 189640 D 349163 CDS YP_001233314.1 148259187 5161216 complement(193712..194989) 1 NC_009484.1 PFAM: enolase; phosphopyruvate hydratase 194989 5161216 Acry_0167 Acidiphilium cryptum JF-5 phosphopyruvate hydratase YP_001233314.1 193712 R 349163 CDS YP_001233315.1 148259188 5161237 complement(195047..195508) 1 NC_009484.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 195508 5161237 Acry_0168 Acidiphilium cryptum JF-5 endoribonuclease L-PSP YP_001233315.1 195047 R 349163 CDS YP_001233316.1 148259189 5161238 complement(195512..197038) 1 NC_009484.1 hypothetical protein 197038 5161238 Acry_0169 Acidiphilium cryptum JF-5 hypothetical protein YP_001233316.1 195512 R 349163 CDS YP_001233317.1 148259190 5161223 197148..197636 1 NC_009484.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; NADH:ubiquinone oxidoreductase subunit 197636 5161223 Acry_0170 Acidiphilium cryptum JF-5 NADH:ubiquinone oxidoreductase subunit YP_001233317.1 197148 D 349163 CDS YP_001233318.1 148259191 5161143 197674..198174 1 NC_009484.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 198174 5161143 Acry_0171 Acidiphilium cryptum JF-5 hypothetical protein YP_001233318.1 197674 D 349163 CDS YP_001233319.1 148259192 5161144 198171..198752 1 NC_009484.1 hypothetical protein 198752 5161144 Acry_0172 Acidiphilium cryptum JF-5 hypothetical protein YP_001233319.1 198171 D 349163 CDS YP_001233320.1 148259193 5161460 198903..199997 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 199997 5161460 Acry_0173 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001233320.1 198903 D 349163 CDS YP_001233321.1 148259194 5161755 200253..201338 1 NC_009484.1 PFAM: surface antigen msp4 family protein; OmpA/MotB domain protein; OmpA/MotB domain-containing protein 201338 5161755 Acry_0174 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001233321.1 200253 D 349163 CDS YP_001233322.1 148259195 5161869 complement(201391..202158) 1 NC_009484.1 protein tyrosine/serine phosphatase 202158 5161869 Acry_0175 Acidiphilium cryptum JF-5 protein tyrosine/serine phosphatase YP_001233322.1 201391 R 349163 CDS YP_001233323.1 148259196 5161870 complement(202166..202660) 1 NC_009484.1 hypothetical protein 202660 5161870 Acry_0176 Acidiphilium cryptum JF-5 hypothetical protein YP_001233323.1 202166 R 349163 CDS YP_001233324.1 148259197 5162483 complement(202767..203078) 1 NC_009484.1 PFAM: Ethyl tert-butyl ether degradation EthD; ethyl tert-butyl ether degradation EthD 203078 5162483 Acry_0177 Acidiphilium cryptum JF-5 ethyl tert-butyl ether degradation EthD YP_001233324.1 202767 R 349163 CDS YP_001233325.1 148259198 5162168 complement(203141..204565) 1 NC_009484.1 PFAM: pyruvate kinase; pyruvate kinase 204565 5162168 Acry_0178 Acidiphilium cryptum JF-5 pyruvate kinase YP_001233325.1 203141 R 349163 CDS YP_001233326.1 148259199 5162169 204710..205024 1 NC_009484.1 PFAM: protein of unknown function DUF1244; hypothetical protein 205024 5162169 Acry_0179 Acidiphilium cryptum JF-5 hypothetical protein YP_001233326.1 204710 D 349163 CDS YP_001233327.1 148259200 5162098 205082..205357 1 NC_009484.1 hypothetical protein 205357 5162098 Acry_0180 Acidiphilium cryptum JF-5 hypothetical protein YP_001233327.1 205082 D 349163 CDS YP_001233328.1 148259201 5162161 complement(205407..206402) 1 NC_009484.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 206402 5162161 Acry_0181 Acidiphilium cryptum JF-5 delta-aminolevulinic acid dehydratase YP_001233328.1 205407 R 349163 CDS YP_001233329.1 148259202 5162162 complement(206484..207557) 1 NC_009484.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 207557 5162162 Acry_0182 Acidiphilium cryptum JF-5 tartrate dehydrogenase YP_001233329.1 206484 R 349163 CDS YP_001233330.1 148259203 5162368 207590..209005 1 NC_009484.1 hypothetical protein 209005 5162368 Acry_0183 Acidiphilium cryptum JF-5 hypothetical protein YP_001233330.1 207590 D 349163 CDS YP_001233331.1 148259204 5160858 209070..209957 1 NC_009484.1 PFAM: CHAD domain containing protein; CHAD domain-containing protein 209957 5160858 Acry_0184 Acidiphilium cryptum JF-5 CHAD domain-containing protein YP_001233331.1 209070 D 349163 CDS YP_001233332.1 148259205 5160859 210057..212342 1 NC_009484.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; ribonucleoside-diphosphate reductase 212342 5160859 Acry_0185 Acidiphilium cryptum JF-5 ribonucleoside-diphosphate reductase YP_001233332.1 210057 D 349163 CDS YP_001233333.1 148259206 5160003 complement(212360..213367) 1 NC_009484.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase 213367 5160003 Acry_0186 Acidiphilium cryptum JF-5 alanine racemase YP_001233333.1 212360 R 349163 CDS YP_001233334.1 148259207 5160194 213562..216075 1 NC_009484.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase 216075 5160194 Acry_0187 Acidiphilium cryptum JF-5 phosphoenolpyruvate-protein phosphotransferase YP_001233334.1 213562 D 349163 CDS YP_001233335.1 148259208 5160195 216072..217025 1 NC_009484.1 PFAM: PfkB domain protein; 1-phosphofructokinase 217025 5160195 Acry_0188 Acidiphilium cryptum JF-5 1-phosphofructokinase YP_001233335.1 216072 D 349163 CDS YP_001233336.1 148259209 5159488 217022..218716 1 NC_009484.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 218716 5159488 Acry_0189 Acidiphilium cryptum JF-5 PTS system fructose subfamily transporter subunit IIC YP_001233336.1 217022 D 349163 CDS YP_001233337.1 148259210 5160908 218787..219227 1 NC_009484.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 219227 5160908 Acry_0190 Acidiphilium cryptum JF-5 thioesterase superfamily protein YP_001233337.1 218787 D 349163 CDS YP_001233338.1 148259211 5160756 219239..220156 1 NC_009484.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 220156 5160756 Acry_0191 Acidiphilium cryptum JF-5 2-dehydropantoate 2-reductase YP_001233338.1 219239 D 349163 CDS YP_001233339.1 148259212 5160757 complement(220129..220764) 1 NC_009484.1 hypothetical protein 220764 5160757 Acry_0192 Acidiphilium cryptum JF-5 hypothetical protein YP_001233339.1 220129 R 349163 CDS YP_001233340.1 148259213 5161194 complement(220749..222866) 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 222866 5161194 Acry_0193 Acidiphilium cryptum JF-5 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_001233340.1 220749 R 349163 CDS YP_001233341.1 148259214 5161012 complement(222874..224613) 1 NC_009484.1 PFAM: metallophosphoesterase; Radical SAM domain protein; radical SAM domain-containing protein 224613 5161012 Acry_0194 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001233341.1 222874 R 349163 CDS YP_001233342.1 148259215 5161013 complement(224624..226021) 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 226021 5161013 Acry_0195 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233342.1 224624 R 349163 CDS YP_001233343.1 148259216 5159767 226341..227264 1 NC_009484.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 227264 5159767 Acry_0196 Acidiphilium cryptum JF-5 dihydrodipicolinate synthetase YP_001233343.1 226341 D 349163 CDS YP_001233344.1 148259217 5162554 227261..228829 1 NC_009484.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 228829 5162554 Acry_0197 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001233344.1 227261 D 349163 CDS YP_001233345.1 148259218 5162555 complement(228858..229571) 1 NC_009484.1 PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 229571 5162555 Acry_0198 Acidiphilium cryptum JF-5 hypothetical protein YP_001233345.1 228858 R 349163 CDS YP_001233346.1 148259219 5162590 230055..230918 1 NC_009484.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 230918 5162590 Acry_0199 Acidiphilium cryptum JF-5 peptidase M48, Ste24p YP_001233346.1 230055 D 349163 CDS YP_001233347.1 148259220 5159736 complement(231000..231530) 1 NC_009484.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 231530 5159736 Acry_0200 Acidiphilium cryptum JF-5 heat shock protein Hsp20 YP_001233347.1 231000 R 349163 CDS YP_001233348.1 148259221 5159737 complement(231784..233073) 1 NC_009484.1 hypothetical protein 233073 5159737 Acry_0201 Acidiphilium cryptum JF-5 hypothetical protein YP_001233348.1 231784 R 349163 CDS YP_001233349.1 148259222 5159751 complement(233060..234001) 1 NC_009484.1 hypothetical protein 234001 5159751 Acry_0202 Acidiphilium cryptum JF-5 hypothetical protein YP_001233349.1 233060 R 349163 CDS YP_001233350.1 148259223 5160703 234071..234883 1 NC_009484.1 hypothetical protein 234883 5160703 Acry_0203 Acidiphilium cryptum JF-5 hypothetical protein YP_001233350.1 234071 D 349163 CDS YP_001233351.1 148259224 5160704 235043..236467 1 NC_009484.1 response regulator receiver protein 236467 5160704 Acry_0204 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001233351.1 235043 D 349163 CDS YP_001233352.1 148259225 5160238 236467..237831 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 237831 5160238 Acry_0205 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233352.1 236467 D 349163 CDS YP_001233353.1 148259226 5159535 237828..239027 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 239027 5159535 Acry_0206 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233353.1 237828 D 349163 CDS YP_001233354.1 148259227 5162071 239024..240832 1 NC_009484.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 240832 5162071 Acry_0207 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233354.1 239024 D 349163 CDS YP_001233355.1 148259228 5162072 240829..241671 1 NC_009484.1 hypothetical protein 241671 5162072 Acry_0208 Acidiphilium cryptum JF-5 hypothetical protein YP_001233355.1 240829 D 349163 CDS YP_001233356.1 148259229 5162217 241628..242284 1 NC_009484.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 242284 5162217 Acry_0209 Acidiphilium cryptum JF-5 phosphoglycerate mutase YP_001233356.1 241628 D 349163 CDS YP_001233357.1 148259230 5161662 242289..243650 1 NC_009484.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose 6-dehydrogenase 243650 5161662 Acry_0210 Acidiphilium cryptum JF-5 UDP-glucose 6-dehydrogenase YP_001233357.1 242289 D 349163 CDS YP_001233358.1 148259231 5161663 complement(243647..244348) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 244348 5161663 Acry_0211 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233358.1 243647 R 349163 CDS YP_001233359.1 148259232 5161760 complement(244450..247137) 1 NC_009484.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 247137 5161760 Acry_0212 Acidiphilium cryptum JF-5 aconitate hydratase YP_001233359.1 244450 R 349163 CDS YP_001233360.1 148259233 5161794 247168..247860 1 NC_009484.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 247860 5161794 Acry_0213 Acidiphilium cryptum JF-5 heme exporter protein CcmA YP_001233360.1 247168 D 349163 CDS YP_001233361.1 148259234 5161795 247857..248510 1 NC_009484.1 PFAM: cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 248510 5161795 Acry_0214 Acidiphilium cryptum JF-5 cytochrome c-type biogenesis protein CcmB YP_001233361.1 247857 D 349163 CDS YP_001233362.1 148259235 5161746 complement(248503..250272) 1 NC_009484.1 PFAM: creatinase; peptidase M24; peptidase M24 250272 5161746 Acry_0215 Acidiphilium cryptum JF-5 peptidase M24 YP_001233362.1 248503 R 349163 CDS YP_001233363.1 148259236 5161736 250436..250705 1 NC_009484.1 PFAM: protein of unknown function DUF1127; hypothetical protein 250705 5161736 Acry_0216 Acidiphilium cryptum JF-5 hypothetical protein YP_001233363.1 250436 D 349163 CDS YP_001233364.1 148259237 5161737 complement(250751..251668) 1 NC_009484.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; ribosomal L11 methyltransferase 251668 5161737 Acry_0217 Acidiphilium cryptum JF-5 ribosomal L11 methyltransferase YP_001233364.1 250751 R 349163 CDS YP_001233365.1 148259238 5161691 complement(251668..253854) 1 NC_009484.1 PFAM: UvrD/REP helicase; UvrD/REP helicase 253854 5161691 Acry_0218 Acidiphilium cryptum JF-5 UvrD/REP helicase YP_001233365.1 251668 R 349163 CDS YP_001233366.1 148259239 5162297 complement(253851..254783) 1 NC_009484.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 254783 5162297 Acry_0219 Acidiphilium cryptum JF-5 5,10-methylenetetrahydrofolate reductase YP_001233366.1 253851 R 349163 CDS YP_001233367.1 148259240 5162298 254938..255810 1 NC_009484.1 PFAM: VacJ family lipoprotein; VacJ family lipoprotein 255810 5162298 Acry_0220 Acidiphilium cryptum JF-5 VacJ family lipoprotein YP_001233367.1 254938 D 349163 CDS YP_001233368.1 148259241 5161596 255848..256474 1 NC_009484.1 PFAM: toluene tolerance family protein; toluene tolerance family protein 256474 5161596 Acry_0221 Acidiphilium cryptum JF-5 toluene tolerance family protein YP_001233368.1 255848 D 349163 CDS YP_001233369.1 148259242 5161595 256531..257136 1 NC_009484.1 PFAM: protein of unknown function DUF150; hypothetical protein 257136 5161595 Acry_0222 Acidiphilium cryptum JF-5 hypothetical protein YP_001233369.1 256531 D 349163 CDS YP_001233370.1 148259243 5161504 257162..258682 1 NC_009484.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 258682 nusA 5161504 nusA Acidiphilium cryptum JF-5 transcription elongation factor NusA YP_001233370.1 257162 D 349163 CDS YP_001233371.1 148259244 5161505 258675..259415 1 NC_009484.1 PFAM: protein of unknown function DUF448; hypothetical protein 259415 5161505 Acry_0224 Acidiphilium cryptum JF-5 hypothetical protein YP_001233371.1 258675 D 349163 CDS YP_001233372.1 148259245 5160744 259432..262095 1 NC_009484.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 262095 infB 5160744 infB Acidiphilium cryptum JF-5 translation initiation factor IF-2 YP_001233372.1 259432 D 349163 CDS YP_001233373.1 148259246 5161437 262065..262487 1 NC_009484.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 262487 rbfA 5161437 rbfA Acidiphilium cryptum JF-5 ribosome-binding factor A YP_001233373.1 262065 D 349163 CDS YP_001233374.1 148259247 5161438 262484..263452 1 NC_009484.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; Sua5/YciO/YrdC/YwlC family protein 263452 5161438 Acry_0227 Acidiphilium cryptum JF-5 Sua5/YciO/YrdC/YwlC family protein YP_001233374.1 262484 D 349163 CDS YP_001233375.1 148259248 5161373 complement(263478..266747) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 266747 5161373 Acry_0228 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233375.1 263478 R 349163 CDS YP_001233376.1 148259249 5160602 complement(267076..268038) 1 NC_009484.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 268038 5160602 Acry_0229 Acidiphilium cryptum JF-5 FkbM family methyltransferase YP_001233376.1 267076 R 349163 CDS YP_001233377.1 148259250 5160603 complement(268531..268935) 1 NC_009484.1 ribose/xylose/arabinose/galactoside ABC-type transporter permease 268935 5160603 Acry_0230 Acidiphilium cryptum JF-5 ribose/xylose/arabinose/galactoside ABC-type transporter permease YP_001233377.1 268531 R 349163 CDS YP_001233378.1 148259251 5161265 269405..269719 1 NC_009484.1 PFAM: ribosomal protein L21; 50S ribosomal protein L21 269719 rplU 5161265 rplU Acidiphilium cryptum JF-5 50S ribosomal protein L21 YP_001233378.1 269405 D 349163 CDS YP_001233379.1 148259252 5161301 269735..270004 1 NC_009484.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 270004 rpmA 5161301 rpmA Acidiphilium cryptum JF-5 50S ribosomal protein L27 YP_001233379.1 269735 D 349163 CDS YP_001233380.1 148259253 5161302 270067..271065 1 NC_009484.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 271065 obgE 5161302 obgE Acidiphilium cryptum JF-5 GTPase ObgE YP_001233380.1 270067 D 349163 CDS YP_001233381.1 148259254 5161182 271062..272213 1 NC_009484.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 272213 5161182 Acry_0234 Acidiphilium cryptum JF-5 gamma-glutamyl kinase YP_001233381.1 271062 D 349163 CDS YP_001233382.1 148259255 5161290 complement(272229..273335) 1 NC_009484.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS 273335 5161290 Acry_0235 Acidiphilium cryptum JF-5 mechanosensitive ion channel MscS YP_001233382.1 272229 R 349163 CDS YP_001233383.1 148259256 5161291 complement(273456..273971) 1 NC_009484.1 hypothetical protein 273971 5161291 Acry_0236 Acidiphilium cryptum JF-5 hypothetical protein YP_001233383.1 273456 R 349163 CDS YP_001233384.1 148259257 5161215 complement(274069..274857) 1 NC_009484.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 274857 5161215 Acry_0237 Acidiphilium cryptum JF-5 arginyl-tRNA-protein transferase YP_001233384.1 274069 R 349163 CDS YP_001233385.1 148259258 5160923 complement(274854..275348) 1 NC_009484.1 PFAM: RDD domain containing protein; RDD domain-containing protein 275348 5160923 Acry_0238 Acidiphilium cryptum JF-5 RDD domain-containing protein YP_001233385.1 274854 R 349163 CDS YP_001233386.1 148259259 5160024 275507..276439 1 NC_009484.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 276439 5160024 Acry_0239 Acidiphilium cryptum JF-5 ribose-phosphate pyrophosphokinase YP_001233386.1 275507 D 349163 CDS YP_001233387.1 148259260 5160025 276467..277087 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 277087 5160025 Acry_0240 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001233387.1 276467 D 349163 CDS YP_001233388.1 148259261 5160742 277087..277671 1 NC_009484.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 277671 5160742 Acry_0241 Acidiphilium cryptum JF-5 phosphoglycerate mutase YP_001233388.1 277087 D 349163 CDS YP_001233389.1 148259262 5161078 277718..278881 1 NC_009484.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 278881 5161078 Acry_0242 Acidiphilium cryptum JF-5 iron-containing alcohol dehydrogenase YP_001233389.1 277718 D 349163 CDS YP_001233390.1 148259263 5161079 complement(278928..280097) 1 NC_009484.1 PFAM: Amidase; amidase 280097 5161079 Acry_0243 Acidiphilium cryptum JF-5 amidase YP_001233390.1 278928 R 349163 CDS YP_001233391.1 148259264 5161068 280204..281154 1 NC_009484.1 hypothetical protein 281154 5161068 Acry_0244 Acidiphilium cryptum JF-5 hypothetical protein YP_001233391.1 280204 D 349163 CDS YP_001233392.1 148259265 5160983 281151..282005 1 NC_009484.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 282005 5160983 Acry_0245 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001233392.1 281151 D 349163 CDS YP_001233393.1 148259266 5160984 complement(282357..284444) 1 NC_009484.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 284444 5160984 Acry_0246 Acidiphilium cryptum JF-5 elongation factor G YP_001233393.1 282357 R 349163 CDS YP_001233394.1 148259267 5160884 complement(284643..284924) 1 NC_009484.1 hypothetical protein 284924 5160884 Acry_0247 Acidiphilium cryptum JF-5 hypothetical protein YP_001233394.1 284643 R 349163 CDS YP_001233395.1 148259268 5160795 complement(284993..286264) 1 NC_009484.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Serine-type D-Ala-D-Ala carboxypeptidase 286264 5160795 Acry_0248 Acidiphilium cryptum JF-5 Serine-type D-Ala-D-Ala carboxypeptidase YP_001233395.1 284993 R 349163 CDS YP_001233396.1 148259269 5160796 286395..287153 1 NC_009484.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 287153 5160796 Acry_0249 Acidiphilium cryptum JF-5 signal peptidase I YP_001233396.1 286395 D 349163 CDS YP_001233397.1 148259270 5160853 287150..287815 1 NC_009484.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 287815 5160853 Acry_0250 Acidiphilium cryptum JF-5 ribonuclease III YP_001233397.1 287150 D 349163 CDS YP_001233398.1 148259271 5160449 287812..288699 1 NC_009484.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 288699 era 5160449 era Acidiphilium cryptum JF-5 GTP-binding protein Era YP_001233398.1 287812 D 349163 CDS YP_001233399.1 148259272 5160450 complement(288738..289856) 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 289856 5160450 Acry_0252 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001233399.1 288738 R 349163 CDS YP_001233400.1 148259273 5160924 complement(289867..291078) 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 291078 5160924 Acry_0253 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001233400.1 289867 R 349163 CDS YP_001233401.1 148259274 5160811 complement(291181..292884) 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 292884 5160811 Acry_0254 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001233401.1 291181 R 349163 CDS YP_001233402.1 148259275 5162328 complement(292881..294977) 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 294977 5162328 Acry_0255 Acidiphilium cryptum JF-5 NAD-binding 3-hydroxyacyl-CoA dehydrogenase YP_001233402.1 292881 R 349163 CDS YP_001233403.1 148259276 5162329 complement(295076..296074) 1 NC_009484.1 ABC-type Fe3+ transport system periplasmic component-like protein 296074 5162329 Acry_0256 Acidiphilium cryptum JF-5 ABC-type Fe3+ transport system periplasmic component-like protein YP_001233403.1 295076 R 349163 CDS YP_001233404.1 148259277 5160506 complement(296074..297447) 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 297447 5160506 Acry_0257 Acidiphilium cryptum JF-5 hypothetical protein YP_001233404.1 296074 R 349163 CDS YP_001233405.1 148259278 5160422 complement(297444..299324) 1 NC_009484.1 PFAM: sulfotransferase; Tetratricopeptide TPR_4; sulfotransferase 299324 5160422 Acry_0258 Acidiphilium cryptum JF-5 sulfotransferase YP_001233405.1 297444 R 349163 CDS YP_001233406.1 148259279 5160423 299456..300412 1 NC_009484.1 PFAM: Rubrerythrin; protein of unknown function DUF125, transmembrane; rubrerythrin 300412 5160423 Acry_0259 Acidiphilium cryptum JF-5 rubrerythrin YP_001233406.1 299456 D 349163 CDS YP_001233407.1 148259280 5160575 300444..301400 1 NC_009484.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 301400 5160575 Acry_0260 Acidiphilium cryptum JF-5 2-nitropropane dioxygenase YP_001233407.1 300444 D 349163 CDS YP_001233408.1 148259281 5160430 complement(301408..302073) 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 302073 5160430 Acry_0261 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001233408.1 301408 R 349163 CDS YP_001233409.1 148259282 5160431 complement(302070..302897) 1 NC_009484.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage T-protein 302897 5160431 Acry_0262 Acidiphilium cryptum JF-5 glycine cleavage T-protein YP_001233409.1 302070 R 349163 CDS YP_001233410.1 148259283 5160433 302946..303842 1 NC_009484.1 PFAM: glycosyl transferase, family 9; glycosyl transferase family protein 303842 5160433 Acry_0263 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233410.1 302946 D 349163 CDS YP_001233411.1 148259284 5160434 303839..304864 1 NC_009484.1 PFAM: glycosyl transferase, group 1; phosphatidylserine decarboxylase 304864 5160434 Acry_0264 Acidiphilium cryptum JF-5 phosphatidylserine decarboxylase YP_001233411.1 303839 D 349163 CDS YP_001233412.1 148259285 5160435 304864..306609 1 NC_009484.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 306609 5160435 Acry_0265 Acidiphilium cryptum JF-5 asparagine synthase YP_001233412.1 304864 D 349163 CDS YP_001233413.1 148259286 5160027 306606..307934 1 NC_009484.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 307934 5160027 Acry_0266 Acidiphilium cryptum JF-5 dihydroorotase YP_001233413.1 306606 D 349163 CDS YP_001233414.1 148259287 5161401 complement(308584..309174) 1 NC_009484.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 309174 5161401 Acry_0267 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001233414.1 308584 R 349163 CDS YP_001233415.1 148259288 5160386 complement(309171..309485) 1 NC_009484.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; integration host factor subunit alpha 309485 5160386 Acry_0268 Acidiphilium cryptum JF-5 integration host factor subunit alpha YP_001233415.1 309171 R 349163 CDS YP_001233416.1 148259289 5160307 complement(309567..310529) 1 NC_009484.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 310529 5160307 Acry_0269 Acidiphilium cryptum JF-5 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001233416.1 309567 R 349163 CDS YP_001233417.1 148259290 5160327 complement(310535..311677) 1 NC_009484.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 311677 5160327 Acry_0270 Acidiphilium cryptum JF-5 putative glycerol-3-phosphate acyltransferase PlsX YP_001233417.1 310535 R 349163 CDS YP_001233418.1 148259291 5160185 complement(311765..311968) 1 NC_009484.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 311968 rpmF 5160185 rpmF Acidiphilium cryptum JF-5 50S ribosomal protein L32 YP_001233418.1 311765 R 349163 CDS YP_001233419.1 148259292 5160186 312113..313225 1 NC_009484.1 PFAM: SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 313225 5160186 Acry_0272 Acidiphilium cryptum JF-5 SmpA/OmlA domain-containing protein YP_001233419.1 312113 D 349163 CDS YP_001233420.1 148259293 5159781 313230..314819 1 NC_009484.1 phosphatase-like protein 314819 5159781 Acry_0273 Acidiphilium cryptum JF-5 phosphatase-like protein YP_001233420.1 313230 D 349163 CDS YP_001233421.1 148259294 5160134 314881..316359 1 NC_009484.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 316359 5160134 Acry_0274 Acidiphilium cryptum JF-5 succinate-semialdehyde dehydrogenase YP_001233421.1 314881 D 349163 CDS YP_001233422.1 148259295 5161435 316607..317830 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 317830 5161435 Acry_0275 Acidiphilium cryptum JF-5 phage integrase family protein YP_001233422.1 316607 D 349163 CDS YP_001233423.1 148259296 5159727 317827..318465 1 NC_009484.1 hypothetical protein 318465 5159727 Acry_0276 Acidiphilium cryptum JF-5 hypothetical protein YP_001233423.1 317827 D 349163 CDS YP_001233424.1 148259297 5160202 318727..319059 1 NC_009484.1 TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein 319059 5160202 Acry_0277 Acidiphilium cryptum JF-5 DNA binding domain-containing protein YP_001233424.1 318727 D 349163 CDS YP_001233425.1 148259298 5160203 319056..321113 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 321113 5160203 Acry_0278 Acidiphilium cryptum JF-5 phage integrase family protein YP_001233425.1 319056 D 349163 CDS YP_001233426.1 148259299 5159706 321100..322200 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 322200 5159706 Acry_0279 Acidiphilium cryptum JF-5 phage integrase family protein YP_001233426.1 321100 D 349163 CDS YP_001233427.1 148259300 5159988 322246..322575 1 NC_009484.1 hypothetical protein 322575 5159988 Acry_0280 Acidiphilium cryptum JF-5 hypothetical protein YP_001233427.1 322246 D 349163 CDS YP_001233428.1 148259301 5159989 322577..323068 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 323068 5159989 Acry_0281 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001233428.1 322577 D 349163 CDS YP_001233429.1 148259302 5159667 complement(323464..324210) 1 NC_009484.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 324210 5159667 Acry_0282 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001233429.1 323464 R 349163 CDS YP_001233430.1 148259303 5159543 complement(324228..325775) 1 NC_009484.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 325775 5159543 Acry_0283 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001233430.1 324228 R 349163 CDS YP_001233431.1 148259304 5159544 325989..326366 1 NC_009484.1 hypothetical protein 326366 5159544 Acry_0284 Acidiphilium cryptum JF-5 hypothetical protein YP_001233431.1 325989 D 349163 CDS YP_001233432.1 148259305 5159830 326433..326975 1 NC_009484.1 PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 326975 5159830 Acry_0285 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001233432.1 326433 D 349163 CDS YP_001233433.1 148259306 5159651 complement(327029..328759) 1 NC_009484.1 hypothetical protein 328759 5159651 Acry_0286 Acidiphilium cryptum JF-5 hypothetical protein YP_001233433.1 327029 R 349163 CDS YP_001233434.1 148259307 5159792 complement(329312..330535) 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 330535 5159792 Acry_0287 Acidiphilium cryptum JF-5 transposase, mutator type YP_001233434.1 329312 R 349163 CDS YP_001233435.1 148259308 5161537 complement(331501..332604) 1 NC_009484.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase 332604 5161537 Acry_0289 Acidiphilium cryptum JF-5 DegT/DnrJ/EryC1/StrS aminotransferase YP_001233435.1 331501 R 349163 CDS YP_001233436.1 148259309 5159766 complement(332627..333898) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 333898 5159766 Acry_0290 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233436.1 332627 R 349163 CDS YP_001233437.1 148259310 5159638 complement(333910..334947) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 334947 5159638 Acry_0291 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233437.1 333910 R 349163 CDS YP_001233438.1 148259311 5159639 complement(334944..335993) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 335993 5159639 Acry_0292 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233438.1 334944 R 349163 CDS YP_001233439.1 148259312 5159640 complement(335990..336634) 1 NC_009484.1 carbonic anhydrase 336634 5159640 Acry_0293 Acidiphilium cryptum JF-5 carbonic anhydrase YP_001233439.1 335990 R 349163 CDS YP_001233440.1 148259313 5162516 complement(336631..337995) 1 NC_009484.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 337995 5162516 Acry_0294 Acidiphilium cryptum JF-5 FkbM family methyltransferase YP_001233440.1 336631 R 349163 CDS YP_001233441.1 148259314 5162517 339218..341617 1 NC_009484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 341617 5162517 Acry_0295 Acidiphilium cryptum JF-5 TonB-dependent receptor YP_001233441.1 339218 D 349163 CDS YP_001233442.1 148259315 5159874 341966..342544 1 NC_009484.1 TIGRFAM: TonB family protein; TonB family protein 342544 5159874 Acry_0296 Acidiphilium cryptum JF-5 TonB family protein YP_001233442.1 341966 D 349163 CDS YP_001233443.1 148259316 5160144 342711..343733 1 NC_009484.1 ABC-type Fe3+ transport system periplasmic component-like protein 343733 5160144 Acry_0297 Acidiphilium cryptum JF-5 ABC-type Fe3+ transport system periplasmic component-like protein YP_001233443.1 342711 D 349163 CDS YP_001233444.1 148259317 5160145 343759..345315 1 NC_009484.1 ABC-type Fe3+ transport system permease component-like protein 345315 5160145 Acry_0298 Acidiphilium cryptum JF-5 ABC-type Fe3+ transport system permease component-like protein YP_001233444.1 343759 D 349163 CDS YP_001233445.1 148259318 5159965 345312..346361 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 346361 5159965 Acry_0299 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233445.1 345312 D 349163 CDS YP_001233446.1 148259319 5159872 complement(346362..347585) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 347585 5159872 Acry_0300 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001233446.1 346362 R 349163 CDS YP_001233447.1 148259320 5159873 complement(347592..349955) 1 NC_009484.1 PFAM: protein of unknown function DUF214; hypothetical protein 349955 5159873 Acry_0301 Acidiphilium cryptum JF-5 hypothetical protein YP_001233447.1 347592 R 349163 CDS YP_001233448.1 148259321 5160721 complement(349962..350714) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 350714 5160721 Acry_0302 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233448.1 349962 R 349163 CDS YP_001233449.1 148259322 5159760 complement(350817..351140) 1 NC_009484.1 PFAM: protein of unknown function DUF190; hypothetical protein 351140 5159760 Acry_0303 Acidiphilium cryptum JF-5 hypothetical protein YP_001233449.1 350817 R 349163 CDS YP_001233450.1 148259323 5161844 complement(351142..351723) 1 NC_009484.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 351723 5161844 Acry_0304 Acidiphilium cryptum JF-5 CrcB protein YP_001233450.1 351142 R 349163 CDS YP_001233451.1 148259324 5161845 complement(351774..353018) 1 NC_009484.1 PFAM: Arsenical pump membrane protein; Citrate transporter; citrate transporter 353018 5161845 Acry_0305 Acidiphilium cryptum JF-5 citrate transporter YP_001233451.1 351774 R 349163 CDS YP_001233452.1 148259325 5162573 complement(353179..355302) 1 NC_009484.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; ABC transporter-like protein 355302 5162573 Acry_0306 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233452.1 353179 R 349163 CDS YP_001233453.1 148259326 5159621 complement(355316..356557) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 356557 5159621 Acry_0307 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001233453.1 355316 R 349163 CDS YP_001233454.1 148259327 5159622 complement(356674..359730) 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 359730 5159622 Acry_0308 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001233454.1 356674 R 349163 CDS YP_001233455.1 148259328 5159722 complement(359727..360776) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 360776 5159722 Acry_0309 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001233455.1 359727 R 349163 CDS YP_001233456.1 148259329 5159889 complement(360781..362142) 1 NC_009484.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 362142 5159889 Acry_0310 Acidiphilium cryptum JF-5 outer membrane efflux protein YP_001233456.1 360781 R 349163 CDS YP_001233457.1 148259330 5159890 362240..362974 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 362974 5159890 Acry_0311 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233457.1 362240 D 349163 CDS YP_001233458.1 148259331 5160303 362971..364380 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 364380 5160303 Acry_0312 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001233458.1 362971 D 349163 CDS YP_001233459.1 148259332 5160684 complement(364405..365304) 1 NC_009484.1 SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 365304 5160684 Acry_0313 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001233459.1 364405 R 349163 CDS YP_001233460.1 148259333 5160685 complement(365304..365765) 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 365765 5160685 Acry_0314 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001233460.1 365304 R 349163 CDS YP_001233461.1 148259334 5160680 365851..367680 1 NC_009484.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; hypothetical protein 367680 5160680 Acry_0315 Acidiphilium cryptum JF-5 hypothetical protein YP_001233461.1 365851 D 349163 CDS YP_001233462.1 148259335 5160985 367771..368979 1 NC_009484.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 368979 5160985 Acry_0316 Acidiphilium cryptum JF-5 diaminopropionate ammonia-lyase YP_001233462.1 367771 D 349163 CDS YP_001233463.1 148259336 5160986 complement(368973..369968) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 369968 5160986 Acry_0317 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001233463.1 368973 R 349163 CDS YP_001233464.1 148259337 5162390 complement(370018..371052) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 371052 5162390 Acry_0318 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001233464.1 370018 R 349163 CDS YP_001233465.1 148259338 5161519 complement(371049..371897) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 371897 5161519 Acry_0319 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233465.1 371049 R 349163 CDS YP_001233466.1 148259339 5161819 372078..372518 1 NC_009484.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; cupin 372518 5161819 Acry_0320 Acidiphilium cryptum JF-5 cupin YP_001233466.1 372078 D 349163 CDS YP_001233467.1 148259340 5161820 372526..373770 1 NC_009484.1 PFAM: monooxygenase, FAD-binding; hypothetical protein 373770 5161820 Acry_0321 Acidiphilium cryptum JF-5 hypothetical protein YP_001233467.1 372526 D 349163 CDS YP_001233468.1 148259341 5162310 373767..374582 1 NC_009484.1 hypothetical protein 374582 5162310 Acry_0322 Acidiphilium cryptum JF-5 hypothetical protein YP_001233468.1 373767 D 349163 CDS YP_001233469.1 148259342 5162055 374670..375437 1 NC_009484.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 375437 5162055 Acry_0323 Acidiphilium cryptum JF-5 pyrroloquinoline quinone biosynthesis protein PqqC YP_001233469.1 374670 D 349163 CDS YP_001233470.1 148259343 5162056 375504..376133 1 NC_009484.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 376133 5162056 Acry_0324 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001233470.1 375504 D 349163 CDS YP_001233471.1 148259344 5161993 376130..376969 1 NC_009484.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 376969 5161993 Acry_0325 Acidiphilium cryptum JF-5 PhzF family phenazine biosynthesis protein YP_001233471.1 376130 D 349163 CDS YP_001233472.1 148259345 5161998 377157..377384 1 NC_009484.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 377384 5161998 Acry_0326 Acidiphilium cryptum JF-5 hydrogenase assembly chaperone HypC/HupF YP_001233472.1 377157 D 349163 CDS YP_001233473.1 148259346 5161999 377398..378492 1 NC_009484.1 PFAM: hydrogenase formation HypD protein; hydrogenase formation HypD protein 378492 5161999 Acry_0327 Acidiphilium cryptum JF-5 hydrogenase formation HypD protein YP_001233473.1 377398 D 349163 CDS YP_001233474.1 148259347 5159741 378503..380767 1 NC_009484.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; (NiFe) hydrogenase maturation protein HypF 380767 5159741 Acry_0328 Acidiphilium cryptum JF-5 (NiFe) hydrogenase maturation protein HypF YP_001233474.1 378503 D 349163 CDS YP_001233475.1 148259348 5159633 380764..381780 1 NC_009484.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; hydrogenase expression/formation protein HypE 381780 5159633 Acry_0329 Acidiphilium cryptum JF-5 hydrogenase expression/formation protein HypE YP_001233475.1 380764 D 349163 CDS YP_001233476.1 148259349 5159634 complement(381787..382671) 1 NC_009484.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; hydrogenase nickel incorporation protein HypB 382671 5159634 Acry_0330 Acidiphilium cryptum JF-5 hydrogenase nickel incorporation protein HypB YP_001233476.1 381787 R 349163 CDS YP_001233477.1 148259350 5161924 complement(382671..383012) 1 NC_009484.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA 383012 5161924 Acry_0331 Acidiphilium cryptum JF-5 hydrogenase nickel incorporation protein HypA YP_001233477.1 382671 R 349163 CDS YP_001233478.1 148259351 5161625 complement(383005..383202) 1 NC_009484.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 383202 5161625 Acry_0332 Acidiphilium cryptum JF-5 rubredoxin-type Fe(Cys)4 protein YP_001233478.1 383005 R 349163 CDS YP_001233479.1 148259352 5161626 complement(383199..384029) 1 NC_009484.1 PFAM: HupH hydrogenase expression protein; HupH hydrogenase expression protein 384029 5161626 Acry_0333 Acidiphilium cryptum JF-5 HupH hydrogenase expression protein YP_001233479.1 383199 R 349163 CDS YP_001233480.1 148259353 5160900 complement(384032..384430) 1 NC_009484.1 PFAM: hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE 384430 5160900 Acry_0334 Acidiphilium cryptum JF-5 hydrogenase-1 expression HyaE YP_001233480.1 384032 R 349163 CDS YP_001233481.1 148259354 5160531 complement(384430..385005) 1 NC_009484.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; hydrogenase expression/formation protein 385005 5160531 Acry_0335 Acidiphilium cryptum JF-5 hydrogenase expression/formation protein YP_001233481.1 384430 R 349163 CDS YP_001233482.1 148259355 5159804 complement(385002..385736) 1 NC_009484.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; Ni/Fe-hydrogenase, b-type cytochrome subunit 385736 5159804 Acry_0336 Acidiphilium cryptum JF-5 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_001233482.1 385002 R 349163 CDS YP_001233483.1 148259356 5159805 complement(385770..387566) 1 NC_009484.1 PFAM: nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit 387566 5159805 Acry_0337 Acidiphilium cryptum JF-5 nickel-dependent hydrogenase, large subunit YP_001233483.1 385770 R 349163 CDS YP_001233484.1 148259357 5159654 complement(387563..388684) 1 NC_009484.1 TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA 388684 5159654 Acry_0338 Acidiphilium cryptum JF-5 hydrogenase (NiFe) small subunit HydA YP_001233484.1 387563 R 349163 CDS YP_001233485.1 148259358 5160407 388837..389232 1 NC_009484.1 PFAM: protein of unknown function DUF1486; hypothetical protein 389232 5160407 Acry_0339 Acidiphilium cryptum JF-5 hypothetical protein YP_001233485.1 388837 D 349163 CDS YP_001233486.1 148259359 5160408 389242..389688 1 NC_009484.1 PFAM: cyclase/dehydrase; cyclase/dehydrase 389688 5160408 Acry_0340 Acidiphilium cryptum JF-5 cyclase/dehydrase YP_001233486.1 389242 D 349163 CDS YP_001233487.1 148259360 5160354 complement(389670..391208) 1 NC_009484.1 PFAM: UbiA prenyltransferase; UbiA prenyltransferase 391208 5160354 Acry_0341 Acidiphilium cryptum JF-5 UbiA prenyltransferase YP_001233487.1 389670 R 349163 CDS YP_001233488.1 148259361 5162423 complement(391239..391916) 1 NC_009484.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 391916 5162423 Acry_0342 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001233488.1 391239 R 349163 CDS YP_001233489.1 148259362 5162424 complement(391933..392970) 1 NC_009484.1 PFAM: Polysulphide reductase, NrfD; polysulfide reductase NrfD 392970 5162424 Acry_0343 Acidiphilium cryptum JF-5 polysulfide reductase NrfD YP_001233489.1 391933 R 349163 CDS YP_001233490.1 148259363 5161962 complement(392998..393540) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 393540 5161962 Acry_0344 Acidiphilium cryptum JF-5 4Fe-4S ferredoxin YP_001233490.1 392998 R 349163 CDS YP_001233491.1 148259364 5161418 complement(393540..395735) 1 NC_009484.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; nitrate reductase 395735 5161418 Acry_0345 Acidiphilium cryptum JF-5 nitrate reductase YP_001233491.1 393540 R 349163 CDS YP_001233492.1 148259365 5161419 396026..397027 1 NC_009484.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 397027 5161419 Acry_0346 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001233492.1 396026 D 349163 CDS YP_001233493.1 148259366 5161538 397563..398132 1 NC_009484.1 hypothetical protein 398132 5161538 Acry_0348 Acidiphilium cryptum JF-5 hypothetical protein YP_001233493.1 397563 D 349163 CDS YP_001233494.1 148259367 5160798 complement(398724..399719) 1 NC_009484.1 PFAM: high-affinity nickel-transporter; high-affinity nickel-transporter 399719 5160798 Acry_0350 Acidiphilium cryptum JF-5 high-affinity nickel-transporter YP_001233494.1 398724 R 349163 CDS YP_001233495.1 148259368 5161697 399822..400451 1 NC_009484.1 hypothetical protein 400451 5161697 Acry_0351 Acidiphilium cryptum JF-5 hypothetical protein YP_001233495.1 399822 D 349163 CDS YP_001233496.1 148259369 5161787 complement(400570..401250) 1 NC_009484.1 hypothetical protein 401250 5161787 Acry_0352 Acidiphilium cryptum JF-5 hypothetical protein YP_001233496.1 400570 R 349163 CDS YP_001233497.1 148259370 5161722 complement(401247..402245) 1 NC_009484.1 PFAM: Hsp33 protein; Hsp33 protein 402245 5161722 Acry_0353 Acidiphilium cryptum JF-5 Hsp33 protein YP_001233497.1 401247 R 349163 CDS YP_001233498.1 148259371 5161604 402354..403814 1 NC_009484.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; rfaE bifunctional protein 403814 5161604 Acry_0354 Acidiphilium cryptum JF-5 rfaE bifunctional protein YP_001233498.1 402354 D 349163 CDS YP_001233499.1 148259372 5161605 403995..404867 1 NC_009484.1 PFAM: protein of unknown function DUF344; hypothetical protein 404867 5161605 Acry_0355 Acidiphilium cryptum JF-5 hypothetical protein YP_001233499.1 403995 D 349163 CDS YP_001233500.1 148259373 5162432 complement(404875..405597) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 405597 5162432 Acry_0356 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233500.1 404875 R 349163 CDS YP_001233501.1 148259374 5161640 complement(405594..406379) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 406379 5161640 Acry_0357 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233501.1 405594 R 349163 CDS YP_001233502.1 148259375 5161641 complement(406376..407302) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 407302 5161641 Acry_0358 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001233502.1 406376 R 349163 CDS YP_001233503.1 148259376 5161620 complement(407302..408204) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 408204 5161620 Acry_0359 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001233503.1 407302 R 349163 CDS YP_001233504.1 148259377 5161664 complement(408236..409381) 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 409381 5161664 Acry_0360 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001233504.1 408236 R 349163 CDS YP_001233505.1 148259378 5161195 complement(410062..412545) 1 NC_009484.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 412545 pheT 5161195 pheT Acidiphilium cryptum JF-5 phenylalanyl-tRNA synthetase subunit beta YP_001233505.1 410062 R 349163 CDS YP_001233506.1 148259379 5161704 complement(412542..413666) 1 NC_009484.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 413666 pheS 5161704 pheS Acidiphilium cryptum JF-5 phenylalanyl-tRNA synthetase subunit alpha YP_001233506.1 412542 R 349163 CDS YP_001233507.1 148259380 5161562 414505..415008 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 415008 5161562 Acry_0363 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001233507.1 414505 D 349163 CDS YP_001233508.1 148259381 5161563 415177..416094 1 NC_009484.1 hypothetical protein 416094 5161563 Acry_0364 Acidiphilium cryptum JF-5 hypothetical protein YP_001233508.1 415177 D 349163 CDS YP_001233509.1 148259382 5161554 416136..417308 1 NC_009484.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 417308 5161554 Acry_0365 Acidiphilium cryptum JF-5 tRNA(Ile)-lysidine synthetase YP_001233509.1 416136 D 349163 CDS YP_001233510.1 148259383 5161474 417498..419423 1 NC_009484.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 419423 5161474 Acry_0366 Acidiphilium cryptum JF-5 ATP-dependent metalloprotease FtsH YP_001233510.1 417498 D 349163 CDS YP_001233511.1 148259384 5161475 419546..420424 1 NC_009484.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 420424 5161475 Acry_0367 Acidiphilium cryptum JF-5 NAD-binding 6-phosphogluconate dehydrogenase YP_001233511.1 419546 D 349163 CDS YP_001233512.1 148259385 5162384 complement(420428..421189) 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 421189 5162384 Acry_0368 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001233512.1 420428 R 349163 CDS YP_001233513.1 148259386 5161454 421480..423633 1 NC_009484.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 423633 5161454 Acry_0369 Acidiphilium cryptum JF-5 polynucleotide phosphorylase/polyadenylase YP_001233513.1 421480 D 349163 CDS YP_001233514.1 148259387 5161339 complement(423764..424978) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 424978 5161339 Acry_0370 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233514.1 423764 R 349163 CDS YP_001233515.1 148259388 5161340 complement(425010..425651) 1 NC_009484.1 hypothetical protein 425651 5161340 Acry_0371 Acidiphilium cryptum JF-5 hypothetical protein YP_001233515.1 425010 R 349163 CDS YP_001233516.1 148259389 5161204 425746..426147 1 NC_009484.1 PFAM: DoxX family protein; DoxX family protein 426147 5161204 Acry_0372 Acidiphilium cryptum JF-5 DoxX family protein YP_001233516.1 425746 D 349163 CDS YP_001233517.1 148259390 5159922 complement(426210..426413) 1 NC_009484.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 426413 rpsU 5159922 rpsU Acidiphilium cryptum JF-5 30S ribosomal protein S21 YP_001233517.1 426210 R 349163 CDS YP_001233518.1 148259391 5159923 426557..427186 1 NC_009484.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 427186 5159923 Acry_0374 Acidiphilium cryptum JF-5 peptide deformylase YP_001233518.1 426557 D 349163 CDS YP_001233519.1 148259392 5161126 427186..427842 1 NC_009484.1 TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; rpsU-divergently transcribed protein 427842 5161126 Acry_0375 Acidiphilium cryptum JF-5 rpsU-divergently transcribed protein YP_001233519.1 427186 D 349163 CDS YP_001233520.1 148259393 5161020 complement(427811..429001) 1 NC_009484.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 429001 5161020 Acry_0376 Acidiphilium cryptum JF-5 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_001233520.1 427811 R 349163 CDS YP_001233521.1 148259394 5161021 429269..430570 1 NC_009484.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 430570 5161021 Acry_0377 Acidiphilium cryptum JF-5 ammonium transporter YP_001233521.1 429269 D 349163 CDS YP_001233522.1 148259395 5162326 430694..433123 1 NC_009484.1 PFAM: cell divisionFtsK/SpoIIIE; cell division protein FtsK 433123 5162326 Acry_0378 Acidiphilium cryptum JF-5 cell division protein FtsK YP_001233522.1 430694 D 349163 CDS YP_001233523.1 148259396 5160536 433104..433514 1 NC_009484.1 hypothetical protein 433514 5160536 Acry_0379 Acidiphilium cryptum JF-5 hypothetical protein YP_001233523.1 433104 D 349163 CDS YP_001233524.1 148259397 5160537 433567..434481 1 NC_009484.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 434481 5160537 Acry_0380 Acidiphilium cryptum JF-5 fructose-bisphosphate aldolase YP_001233524.1 433567 D 349163 CDS YP_001233525.1 148259398 5160296 434478..435098 1 NC_009484.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 435098 5160296 Acry_0381 Acidiphilium cryptum JF-5 thiamine-phosphate pyrophosphorylase YP_001233525.1 434478 D 349163 CDS YP_001233526.1 148259399 5160732 435182..437716 1 NC_009484.1 capsular polysaccharide biosynthesis protein-like protein 437716 5160732 Acry_0382 Acidiphilium cryptum JF-5 capsular polysaccharide biosynthesis protein-like protein YP_001233526.1 435182 D 349163 CDS YP_001233527.1 148259400 5160733 437884..439887 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 439887 5160733 Acry_0383 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233527.1 437884 D 349163 CDS YP_001233528.1 148259401 5160455 440129..440512 1 NC_009484.1 hypothetical protein 440512 5160455 Acry_0384 Acidiphilium cryptum JF-5 hypothetical protein YP_001233528.1 440129 D 349163 CDS YP_001233529.1 148259402 5162325 440686..441333 1 NC_009484.1 hypothetical protein 441333 5162325 Acry_0385 Acidiphilium cryptum JF-5 hypothetical protein YP_001233529.1 440686 D 349163 CDS YP_001233530.1 148259403 5162285 441407..442804 1 NC_009484.1 SMART: Fucolectin tachylectin-4 pentraxin-1; fucolectin tachylectin-4 pentraxin-1 442804 5162285 Acry_0386 Acidiphilium cryptum JF-5 fucolectin tachylectin-4 pentraxin-1 YP_001233530.1 441407 D 349163 CDS YP_001233531.1 148259404 5162286 complement(442929..444344) 1 NC_009484.1 PFAM: glycosyltransferase sugar-binding region containing DXD motif; glycosyl transferase family protein 444344 5162286 Acry_0387 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233531.1 442929 R 349163 CDS YP_001233532.1 148259405 5160511 444903..447623 1 NC_009484.1 TIGRFAM: ribonuclease, Rne/Rng family; ribonuclease 447623 5160511 Acry_0388 Acidiphilium cryptum JF-5 ribonuclease YP_001233532.1 444903 D 349163 CDS YP_001233533.1 148259406 5160305 447741..448073 1 NC_009484.1 hypothetical protein 448073 5160305 Acry_0389 Acidiphilium cryptum JF-5 hypothetical protein YP_001233533.1 447741 D 349163 CDS YP_001233534.1 148259407 5160306 448095..448457 1 NC_009484.1 FOG: Transposase-like protein; transposase 448457 5160306 Acry_0390 Acidiphilium cryptum JF-5 transposase YP_001233534.1 448095 D 349163 CDS YP_001233535.1 148259408 5160398 complement(448749..449999) 1 NC_009484.1 PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; voltage-gated potassium channel 449999 5160398 Acry_0391 Acidiphilium cryptum JF-5 voltage-gated potassium channel YP_001233535.1 448749 R 349163 CDS YP_001233536.1 148259409 5159692 complement(450087..450326) 1 NC_009484.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase PurS 450326 5159692 Acry_0392 Acidiphilium cryptum JF-5 phosphoribosylformylglycinamidine synthase PurS YP_001233536.1 450087 R 349163 CDS YP_001233537.1 148259410 5159693 complement(450323..451087) 1 NC_009484.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 451087 5159693 Acry_0393 Acidiphilium cryptum JF-5 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001233537.1 450323 R 349163 CDS YP_001233538.1 148259411 5160313 complement(451217..451738) 1 NC_009484.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' 451738 5160313 Acry_0394 Acidiphilium cryptum JF-5 H+-transporting two-sector ATPase subunit B/B' YP_001233538.1 451217 R 349163 CDS YP_001233539.1 148259412 5159887 complement(451745..452314) 1 NC_009484.1 PFAM: H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase, B/B' subunit 452314 5159887 Acry_0395 Acidiphilium cryptum JF-5 H+-transporting two-sector ATPase, B/B' subunit YP_001233539.1 451745 R 349163 CDS YP_001233540.1 148259413 5159888 complement(452340..452573) 1 NC_009484.1 PFAM: H+-transporting two-sector ATPase, C subunit; H+-transporting two-sector ATPase subunit C 452573 5159888 Acry_0396 Acidiphilium cryptum JF-5 H+-transporting two-sector ATPase subunit C YP_001233540.1 452340 R 349163 CDS YP_001233541.1 148259414 5160211 complement(452646..453401) 1 NC_009484.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 453401 5160211 Acry_0397 Acidiphilium cryptum JF-5 F0F1 ATP synthase subunit A YP_001233541.1 452646 R 349163 CDS YP_001233542.1 148259415 5159516 453511..453813 1 NC_009484.1 hypothetical protein 453813 5159516 Acry_0398 Acidiphilium cryptum JF-5 hypothetical protein YP_001233542.1 453511 D 349163 CDS YP_001233543.1 148259416 5159517 complement(453817..457314) 1 NC_009484.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; chromosome segregation protein SMC 457314 5159517 Acry_0399 Acidiphilium cryptum JF-5 chromosome segregation protein SMC YP_001233543.1 453817 R 349163 CDS YP_001233544.1 148259417 5159476 complement(457322..457951) 1 NC_009484.1 protein-disulfide isomerase-like protein 457951 5159476 Acry_0400 Acidiphilium cryptum JF-5 protein-disulfide isomerase-like protein YP_001233544.1 457322 R 349163 CDS YP_001233545.1 148259418 5159895 458153..458668 1 NC_009484.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 458668 5159895 Acry_0401 Acidiphilium cryptum JF-5 adenine phosphoribosyltransferase YP_001233545.1 458153 D 349163 CDS YP_001233546.1 148259419 5159652 458693..459766 1 NC_009484.1 hypothetical protein 459766 5159652 Acry_0402 Acidiphilium cryptum JF-5 hypothetical protein YP_001233546.1 458693 D 349163 CDS YP_001233547.1 148259420 5159653 459796..461196 1 NC_009484.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 461196 5159653 Acry_0403 Acidiphilium cryptum JF-5 DNA repair protein RadA YP_001233547.1 459796 D 349163 CDS YP_001233548.1 148259421 5159791 461196..461759 1 NC_009484.1 PFAM: Colicin V production protein; colicin V production protein 461759 5159791 Acry_0404 Acidiphilium cryptum JF-5 colicin V production protein YP_001233548.1 461196 D 349163 CDS YP_001233549.1 148259422 5159453 461840..463321 1 NC_009484.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 463321 5159453 Acry_0405 Acidiphilium cryptum JF-5 amidophosphoribosyltransferase YP_001233549.1 461840 D 349163 CDS YP_001233550.1 148259423 5159454 463346..464023 1 NC_009484.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 464023 5159454 Acry_0406 Acidiphilium cryptum JF-5 peptide methionine sulfoxide reductase YP_001233550.1 463346 D 349163 CDS YP_001233551.1 148259424 5159864 complement(464083..464340) 1 NC_009484.1 PFAM: protein of unknown function DUF1150; hypothetical protein 464340 5159864 Acry_0407 Acidiphilium cryptum JF-5 hypothetical protein YP_001233551.1 464083 R 349163 CDS YP_001233552.1 148259425 5159465 complement(464342..464845) 1 NC_009484.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 464845 5159465 Acry_0408 Acidiphilium cryptum JF-5 heat shock protein Hsp20 YP_001233552.1 464342 R 349163 CDS YP_001233553.1 148259426 5159466 464962..465528 1 NC_009484.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 465528 5159466 Acry_0409 Acidiphilium cryptum JF-5 peptide deformylase YP_001233553.1 464962 D 349163 CDS YP_001233554.1 148259427 5159818 465528..466433 1 NC_009484.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 466433 5159818 Acry_0410 Acidiphilium cryptum JF-5 methionyl-tRNA formyltransferase YP_001233554.1 465528 D 349163 CDS YP_001233555.1 148259428 5160049 466430..467197 1 NC_009484.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 467197 truA 5160049 truA Acidiphilium cryptum JF-5 tRNA pseudouridine synthase A YP_001233555.1 466430 D 349163 CDS YP_001233556.1 148259429 5160050 467406..467840 1 NC_009484.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; translation initiation factor IF-3 467840 5160050 Acry_0412 Acidiphilium cryptum JF-5 translation initiation factor IF-3 YP_001233556.1 467406 D 349163 CDS YP_001233557.1 148259430 5159863 467857..468513 1 NC_009484.1 hypothetical protein 468513 5159863 Acry_0413 Acidiphilium cryptum JF-5 hypothetical protein YP_001233557.1 467857 D 349163 CDS YP_001233558.1 148259431 5160008 complement(468480..469283) 1 NC_009484.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 469283 5160008 Acry_0414 Acidiphilium cryptum JF-5 exodeoxyribonuclease III Xth YP_001233558.1 468480 R 349163 CDS YP_001233559.1 148259432 5160009 complement(469280..469963) 1 NC_009484.1 PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 469963 5160009 Acry_0415 Acidiphilium cryptum JF-5 fumarylacetoacetate (FAA) hydrolase YP_001233559.1 469280 R 349163 CDS YP_001233560.1 148259433 5159682 complement(469992..470786) 1 NC_009484.1 PFAM: peptidase C26; peptidase C26 470786 5159682 Acry_0416 Acidiphilium cryptum JF-5 peptidase C26 YP_001233560.1 469992 R 349163 CDS YP_001233561.1 148259434 5160028 complement(470842..471462) 1 NC_009484.1 PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 471462 5160028 Acry_0417 Acidiphilium cryptum JF-5 outer membrane lipoprotein carrier protein LolA YP_001233561.1 470842 R 349163 CDS YP_001233562.1 148259435 5159477 complement(471481..471870) 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 471870 5159477 Acry_0418 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001233562.1 471481 R 349163 CDS YP_001233563.1 148259436 5159478 complement(472090..473325) 1 NC_009484.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; leucyl aminopeptidase 473325 5159478 Acry_0419 Acidiphilium cryptum JF-5 leucyl aminopeptidase YP_001233563.1 472090 R 349163 CDS YP_001233564.1 148259437 5162499 473917..475779 1 NC_009484.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 475779 uvrC 5162499 uvrC Acidiphilium cryptum JF-5 excinuclease ABC subunit C YP_001233564.1 473917 D 349163 CDS YP_001233565.1 148259438 5162477 475876..478092 1 NC_009484.1 hypothetical protein 478092 5162477 Acry_0421 Acidiphilium cryptum JF-5 hypothetical protein YP_001233565.1 475876 D 349163 CDS YP_001233566.1 148259439 5162478 complement(478022..478957) 1 NC_009484.1 hypothetical protein 478957 5162478 Acry_0422 Acidiphilium cryptum JF-5 hypothetical protein YP_001233566.1 478022 R 349163 CDS YP_001233567.1 148259440 5159588 complement(478954..479697) 1 NC_009484.1 PFAM: protein of unknown function DUF152; hypothetical protein 479697 5159588 Acry_0423 Acidiphilium cryptum JF-5 hypothetical protein YP_001233567.1 478954 R 349163 CDS YP_001233568.1 148259441 5160146 complement(479694..480668) 1 NC_009484.1 PFAM: protein of unknown function DUF185; hypothetical protein 480668 5160146 Acry_0424 Acidiphilium cryptum JF-5 hypothetical protein YP_001233568.1 479694 R 349163 CDS YP_001233569.1 148259442 5160147 complement(480665..481495) 1 NC_009484.1 PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 481495 5160147 Acry_0425 Acidiphilium cryptum JF-5 prolipoprotein diacylglyceryl transferase YP_001233569.1 480665 R 349163 CDS YP_001233570.1 148259443 5162581 complement(481492..482472) 1 NC_009484.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; ADP-L-glycero-D-manno-heptose-6-epimerase 482472 5162581 Acry_0426 Acidiphilium cryptum JF-5 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001233570.1 481492 R 349163 CDS YP_001233571.1 148259444 5161584 482532..482885 1 NC_009484.1 PFAM: protein of unknown function DUF526; hypothetical protein 482885 5161584 Acry_0427 Acidiphilium cryptum JF-5 hypothetical protein YP_001233571.1 482532 D 349163 CDS YP_001233572.1 148259445 5161585 complement(482861..483454) 1 NC_009484.1 TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 483454 5161585 Acry_0428 Acidiphilium cryptum JF-5 maf protein YP_001233572.1 482861 R 349163 CDS YP_001233573.1 148259446 5159929 complement(483455..484462) 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 484462 5159929 Acry_0429 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001233573.1 483455 R 349163 CDS YP_001233574.1 148259447 5160088 complement(484504..485229) 1 NC_009484.1 PFAM: protein of unknown function DUF45; hypothetical protein 485229 5160088 Acry_0430 Acidiphilium cryptum JF-5 hypothetical protein YP_001233574.1 484504 R 349163 CDS YP_001233575.1 148259448 5160089 complement(485238..485714) 1 NC_009484.1 PFAM: protein of unknown function UPF0153; hypothetical protein 485714 5160089 Acry_0431 Acidiphilium cryptum JF-5 hypothetical protein YP_001233575.1 485238 R 349163 CDS YP_001233576.1 148259449 5159570 complement(485753..486481) 1 NC_009484.1 PFAM: protein of unknown function DUF500; hypothetical protein 486481 5159570 Acry_0432 Acidiphilium cryptum JF-5 hypothetical protein YP_001233576.1 485753 R 349163 CDS YP_001233577.1 148259450 5159928 complement(486539..487219) 1 NC_009484.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 487219 5159928 Acry_0433 Acidiphilium cryptum JF-5 phosphoglycerate mutase YP_001233577.1 486539 R 349163 CDS YP_001233578.1 148259451 5160118 complement(487191..487991) 1 NC_009484.1 PFAM: ABC-2 type transporter; ABC-2 type transporter 487991 5160118 Acry_0434 Acidiphilium cryptum JF-5 ABC-2 type transporter YP_001233578.1 487191 R 349163 CDS YP_001233579.1 148259452 5160119 complement(487988..488725) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 488725 5160119 Acry_0435 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233579.1 487988 R 349163 CDS YP_001233580.1 148259453 5160452 complement(488748..489401) 1 NC_009484.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; methionine biosynthesis protein MetW 489401 5160452 Acry_0436 Acidiphilium cryptum JF-5 methionine biosynthesis protein MetW YP_001233580.1 488748 R 349163 CDS YP_001233581.1 148259454 5161060 complement(489398..490543) 1 NC_009484.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 490543 metX 5161060 metX Acidiphilium cryptum JF-5 homoserine O-acetyltransferase YP_001233581.1 489398 R 349163 CDS YP_001233582.1 148259455 5161061 490649..491536 1 NC_009484.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; chorismate mutase 491536 5161061 Acry_0438 Acidiphilium cryptum JF-5 chorismate mutase YP_001233582.1 490649 D 349163 CDS YP_001233583.1 148259456 5161303 491533..492627 1 NC_009484.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 492627 5161303 Acry_0439 Acidiphilium cryptum JF-5 histidinol-phosphate aminotransferase YP_001233583.1 491533 D 349163 CDS YP_001233584.1 148259457 5161363 492602..493507 1 NC_009484.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; prephenate dehydrogenase 493507 5161363 Acry_0440 Acidiphilium cryptum JF-5 prephenate dehydrogenase YP_001233584.1 492602 D 349163 CDS YP_001233585.1 148259458 5161364 493583..494518 1 NC_009484.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 494518 truB 5161364 truB Acidiphilium cryptum JF-5 tRNA pseudouridine synthase B YP_001233585.1 493583 D 349163 CDS YP_001233586.1 148259459 5160645 494542..494811 1 NC_009484.1 PFAM: ribosomal protein S15; 30S ribosomal protein S15 494811 5160645 Acry_0442 Acidiphilium cryptum JF-5 30S ribosomal protein S15 YP_001233586.1 494542 D 349163 CDS YP_001233587.1 148259460 5162569 494952..495722 1 NC_009484.1 PFAM: protein of unknown function UPF0005; hypothetical protein 495722 5162569 Acry_0443 Acidiphilium cryptum JF-5 hypothetical protein YP_001233587.1 494952 D 349163 CDS YP_001233588.1 148259461 5162570 complement(495815..496114) 1 NC_009484.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 496114 5162570 Acry_0444 Acidiphilium cryptum JF-5 phosphotransferase system, phosphocarrier protein HPr YP_001233588.1 495815 R 349163 CDS YP_001233589.1 148259462 5162218 complement(496105..496527) 1 NC_009484.1 PFAM: PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 496527 5162218 Acry_0445 Acidiphilium cryptum JF-5 PTS system fructose subfamily transporter subunit IIA YP_001233589.1 496105 R 349163 CDS YP_001233590.1 148259463 5161550 complement(496524..497435) 1 NC_009484.1 PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 497435 5161550 Acry_0446 Acidiphilium cryptum JF-5 hypothetical protein YP_001233590.1 496524 R 349163 CDS YP_001233591.1 148259464 5161551 complement(497432..497854) 1 NC_009484.1 HPr kinase 497854 5161551 Acry_0447 Acidiphilium cryptum JF-5 HPr kinase YP_001233591.1 497432 R 349163 CDS YP_001233592.1 148259465 5161378 complement(498015..498281) 1 NC_009484.1 hypothetical protein 498281 5161378 Acry_0448 Acidiphilium cryptum JF-5 hypothetical protein YP_001233592.1 498015 R 349163 CDS YP_001233593.1 148259466 5161115 complement(498269..498586) 1 NC_009484.1 hypothetical protein 498586 5161115 Acry_0449 Acidiphilium cryptum JF-5 hypothetical protein YP_001233593.1 498269 R 349163 CDS YP_001233594.1 148259467 5161042 498917..499600 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 499600 5161042 Acry_0450 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233594.1 498917 D 349163 CDS YP_001233595.1 148259468 5161043 499610..501076 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 501076 5161043 Acry_0451 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001233595.1 499610 D 349163 CDS YP_001233596.1 148259469 5160956 501161..502564 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 502564 5160956 Acry_0452 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233596.1 501161 D 349163 CDS YP_001233597.1 148259470 5160881 complement(502580..505459) 1 NC_009484.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; outer membrane autotransporter 505459 5160881 Acry_0453 Acidiphilium cryptum JF-5 outer membrane autotransporter YP_001233597.1 502580 R 349163 CDS YP_001233598.1 148259471 5161329 complement(506710..507366) 1 NC_009484.1 PFAM: protein of unknown function DUF1345; hypothetical protein 507366 5161329 Acry_0455 Acidiphilium cryptum JF-5 hypothetical protein YP_001233598.1 506710 R 349163 CDS YP_001233599.1 148259472 5160584 complement(507432..509075) 1 NC_009484.1 TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase, FGGY; FGGY-family pentulose kinase 509075 5160584 Acry_0456 Acidiphilium cryptum JF-5 FGGY-family pentulose kinase YP_001233599.1 507432 R 349163 CDS YP_001233600.1 148259473 5159828 complement(509103..510044) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 510044 5159828 Acry_0457 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001233600.1 509103 R 349163 CDS YP_001233601.1 148259474 5159829 complement(510041..510940) 1 NC_009484.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 510940 5159829 Acry_0458 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001233601.1 510041 R 349163 CDS YP_001233602.1 148259475 5160686 511322..512632 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 512632 5160686 Acry_0459 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001233602.1 511322 D 349163 CDS YP_001233603.1 148259476 5162365 512705..513616 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 513616 5162365 Acry_0460 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001233603.1 512705 D 349163 CDS YP_001233604.1 148259477 5162366 513627..514448 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 514448 5162366 Acry_0461 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001233604.1 513627 D 349163 CDS YP_001233605.1 148259478 5161774 514458..515555 1 NC_009484.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 515555 5161774 Acry_0462 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233605.1 514458 D 349163 CDS YP_001233606.1 148259479 5161930 515592..516365 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 516365 5161930 Acry_0463 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233606.1 515592 D 349163 CDS YP_001233607.1 148259480 5161931 516373..517146 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 517146 5161931 Acry_0464 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233607.1 516373 D 349163 CDS YP_001233608.1 148259481 5159714 517227..518726 1 NC_009484.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 518726 5159714 Acry_0465 Acidiphilium cryptum JF-5 glucose-6-phosphate 1-dehydrogenase YP_001233608.1 517227 D 349163 CDS YP_001233609.1 148259482 5162036 518769..520583 1 NC_009484.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 520583 5162036 Acry_0466 Acidiphilium cryptum JF-5 phosphogluconate dehydratase YP_001233609.1 518769 D 349163 CDS YP_001233610.1 148259483 5161384 520580..521215 1 NC_009484.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 521215 5161384 Acry_0467 Acidiphilium cryptum JF-5 2-dehydro-3-deoxyphosphogluconate aldolase YP_001233610.1 520580 D 349163 CDS YP_001233611.1 148259484 5161385 521272..522615 1 NC_009484.1 TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 522615 5161385 Acry_0468 Acidiphilium cryptum JF-5 sugar transporter YP_001233611.1 521272 D 349163 CDS YP_001233612.1 148259485 5161341 complement(522623..523897) 1 NC_009484.1 Na+/H+ antiporter NhaD and related arsenite permease-like protein 523897 5161341 Acry_0469 Acidiphilium cryptum JF-5 Na+/H+ antiporter NhaD and related arsenite permease-like protein YP_001233612.1 522623 R 349163 CDS YP_001233613.1 148259486 5160805 524010..524651 1 NC_009484.1 PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 524651 5160805 Acry_0470 Acidiphilium cryptum JF-5 carbon monoxide dehydrogenase subunit G YP_001233613.1 524010 D 349163 CDS YP_001233614.1 148259487 5160806 524648..525550 1 NC_009484.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 525550 5160806 Acry_0471 Acidiphilium cryptum JF-5 ATPase YP_001233614.1 524648 D 349163 CDS YP_001233615.1 148259488 5161594 525547..526758 1 NC_009484.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; VWA containing CoxE family protein 526758 5161594 Acry_0472 Acidiphilium cryptum JF-5 VWA containing CoxE family protein YP_001233615.1 525547 D 349163 CDS YP_001233616.1 148259489 5162314 526755..527087 1 NC_009484.1 PFAM: protein of unknown function DUF182; hypothetical protein 527087 5162314 Acry_0473 Acidiphilium cryptum JF-5 hypothetical protein YP_001233616.1 526755 D 349163 CDS YP_001233617.1 148259490 5162315 527084..527770 1 NC_009484.1 xanthine and Co dehydrogenase maturation factor 527770 5162315 Acry_0474 Acidiphilium cryptum JF-5 xanthine and Co dehydrogenase maturation factor YP_001233617.1 527084 D 349163 CDS YP_001233618.1 148259491 5162530 527767..529386 1 NC_009484.1 MobA-like protein 529386 5162530 Acry_0475 Acidiphilium cryptum JF-5 MobA-like protein YP_001233618.1 527767 D 349163 CDS YP_001233619.1 148259492 5160553 529383..530342 1 NC_009484.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 530342 5160553 Acry_0476 Acidiphilium cryptum JF-5 D-isomer specific 2-hydroxyacid dehydrogenase YP_001233619.1 529383 D 349163 CDS YP_001233620.1 148259493 5160554 complement(530343..531626) 1 NC_009484.1 TIGRFAM: phenylacetate-CoA ligase; phenylacetate-CoA ligase 531626 5160554 Acry_0477 Acidiphilium cryptum JF-5 phenylacetate-CoA ligase YP_001233620.1 530343 R 349163 CDS YP_001233621.1 148259494 5160493 complement(531631..532092) 1 NC_009484.1 TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; phenylacetic acid degradation protein PaaD 532092 5160493 Acry_0478 Acidiphilium cryptum JF-5 phenylacetic acid degradation protein PaaD YP_001233621.1 531631 R 349163 CDS YP_001233622.1 148259495 5161154 complement(532266..533063) 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; TPR repeat-containing protein 533063 5161154 Acry_0479 Acidiphilium cryptum JF-5 TPR repeat-containing protein YP_001233622.1 532266 R 349163 CDS YP_001233623.1 148259496 5161155 complement(533060..533413) 1 NC_009484.1 hypothetical protein 533413 5161155 Acry_0480 Acidiphilium cryptum JF-5 hypothetical protein YP_001233623.1 533060 R 349163 CDS YP_001233624.1 148259497 5160638 complement(533419..534894) 1 NC_009484.1 PFAM: type II and III secretion system protein; type II and III secretion system protein 534894 5160638 Acry_0481 Acidiphilium cryptum JF-5 type II and III secretion system protein YP_001233624.1 533419 R 349163 CDS YP_001233625.1 148259498 5159943 535148..536386 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 536386 5159943 Acry_0482 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001233625.1 535148 D 349163 CDS YP_001233626.1 148259499 5160650 536464..537339 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 537339 5160650 Acry_0483 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001233626.1 536464 D 349163 CDS YP_001233627.1 148259500 5160651 537339..538259 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 538259 5160651 Acry_0484 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001233627.1 537339 D 349163 CDS YP_001233628.1 148259501 5160715 538256..539728 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 539728 5160715 Acry_0485 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233628.1 538256 D 349163 CDS YP_001233629.1 148259502 5160290 539888..540493 1 NC_009484.1 hypothetical protein 540493 5160290 Acry_0486 Acidiphilium cryptum JF-5 hypothetical protein YP_001233629.1 539888 D 349163 CDS YP_001233630.1 148259503 5160291 complement(540439..541692) 1 NC_009484.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 541692 5160291 Acry_0487 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001233630.1 540439 R 349163 CDS YP_001233631.1 148259504 5159567 541973..542452 1 NC_009484.1 hypothetical protein 542452 5159567 Acry_0488 Acidiphilium cryptum JF-5 hypothetical protein YP_001233631.1 541973 D 349163 CDS YP_001233632.1 148259505 5161647 complement(542505..543035) 1 NC_009484.1 hypothetical protein 543035 5161647 Acry_0489 Acidiphilium cryptum JF-5 hypothetical protein YP_001233632.1 542505 R 349163 CDS YP_001233633.1 148259506 5161648 543623..545851 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; diguanylate cyclase/phosphodiesterase 545851 5161648 Acry_0490 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001233633.1 543623 D 349163 CDS YP_001233634.1 148259507 5160219 complement(546365..546796) 1 NC_009484.1 hypothetical protein 546796 5160219 Acry_0491 Acidiphilium cryptum JF-5 hypothetical protein YP_001233634.1 546365 R 349163 CDS YP_001233635.1 148259508 5160093 complement(547074..547769) 1 NC_009484.1 PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 547769 5160093 Acry_0492 Acidiphilium cryptum JF-5 ThiJ/PfpI domain-containing protein YP_001233635.1 547074 R 349163 CDS YP_001233636.1 148259509 5160094 547848..548795 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 548795 5160094 Acry_0493 Acidiphilium cryptum JF-5 AraC family transcriptional regulator YP_001233636.1 547848 D 349163 CDS YP_001233637.1 148259510 5162459 complement(548900..549682) 1 NC_009484.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 549682 5162459 Acry_0494 Acidiphilium cryptum JF-5 3-hydroxybutyrate dehydrogenase YP_001233637.1 548900 R 349163 CDS YP_001233638.1 148259511 5161666 complement(549723..550460) 1 NC_009484.1 converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase 550460 5161666 Acry_0495 Acidiphilium cryptum JF-5 acetoacetate decarboxylase YP_001233638.1 549723 R 349163 CDS YP_001233639.1 148259512 5161667 complement(550478..551626) 1 NC_009484.1 PFAM: Patatin; patatin 551626 5161667 Acry_0496 Acidiphilium cryptum JF-5 patatin YP_001233639.1 550478 R 349163 CDS YP_001233640.1 148259513 5159848 complement(552015..553919) 1 NC_009484.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 553919 5159848 Acry_0497 Acidiphilium cryptum JF-5 peptidoglycan glycosyltransferase YP_001233640.1 552015 R 349163 CDS YP_001233641.1 148259514 5161915 554127..555041 1 NC_009484.1 hypothetical protein 555041 5161915 Acry_0498 Acidiphilium cryptum JF-5 hypothetical protein YP_001233641.1 554127 D 349163 CDS YP_001233642.1 148259515 5160895 555343..556515 1 NC_009484.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 556515 5160895 Acry_0499 Acidiphilium cryptum JF-5 hypothetical protein YP_001233642.1 555343 D 349163 CDS YP_001233643.1 148259516 5160896 556574..557515 1 NC_009484.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 557515 5160896 Acry_0500 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001233643.1 556574 D 349163 CDS YP_001233644.1 148259517 5162088 complement(557574..558581) 1 NC_009484.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 558581 5162088 Acry_0501 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001233644.1 557574 R 349163 CDS YP_001233645.1 148259518 5162338 complement(558708..560198) 1 NC_009484.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; xylulokinase 560198 5162338 Acry_0502 Acidiphilium cryptum JF-5 xylulokinase YP_001233645.1 558708 R 349163 CDS YP_001233646.1 148259519 5162339 560555..561550 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 561550 5162339 Acry_0503 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001233646.1 560555 D 349163 CDS YP_001233647.1 148259520 5162255 561556..563052 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 563052 5162255 Acry_0504 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233647.1 561556 D 349163 CDS YP_001233648.1 148259521 5161343 563078..564088 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 564088 5161343 Acry_0505 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001233648.1 563078 D 349163 CDS YP_001233649.1 148259522 5161344 564220..564489 1 NC_009484.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 564489 5161344 Acry_0506 Acidiphilium cryptum JF-5 histone family protein DNA-binding protein YP_001233649.1 564220 D 349163 CDS YP_001233650.1 148259523 5161723 complement(564596..565492) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 565492 5161723 Acry_0507 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001233650.1 564596 R 349163 CDS YP_001233651.1 148259524 5161783 complement(565706..566689) 1 NC_009484.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; GDP-mannose 4,6-dehydratase 566689 5161783 Acry_0508 Acidiphilium cryptum JF-5 GDP-mannose 4,6-dehydratase YP_001233651.1 565706 R 349163 CDS YP_001233652.1 148259525 5161784 complement(566768..569014) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 569014 5161784 Acry_0509 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001233652.1 566768 R 349163 CDS YP_001233653.1 148259526 5162458 complement(569007..570050) 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 570050 5162458 Acry_0510 Acidiphilium cryptum JF-5 molybdopterin dehydrogenase YP_001233653.1 569007 R 349163 CDS YP_001233654.1 148259527 5161180 complement(570047..570544) 1 NC_009484.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 570544 5161180 Acry_0511 Acidiphilium cryptum JF-5 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001233654.1 570047 R 349163 CDS YP_001233655.1 148259528 5161181 570685..571290 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 571290 5161181 Acry_0512 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001233655.1 570685 D 349163 CDS YP_001233656.1 148259529 5162442 571423..572100 1 NC_009484.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 572100 5162442 Acry_0513 Acidiphilium cryptum JF-5 HAD family hydrolase YP_001233656.1 571423 D 349163 CDS YP_001233657.1 148259530 5162235 572146..573054 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 573054 5162235 Acry_0514 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001233657.1 572146 D 349163 CDS YP_001233658.1 148259531 5161337 complement(573123..573737) 1 NC_009484.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein A 573737 5161337 Acry_0515 Acidiphilium cryptum JF-5 rare lipoprotein A YP_001233658.1 573123 R 349163 CDS YP_001233659.1 148259532 5161338 complement(573903..574433) 1 NC_009484.1 PFAM: protein of unknown function DUF1130; hypothetical protein 574433 5161338 Acry_0516 Acidiphilium cryptum JF-5 hypothetical protein YP_001233659.1 573903 R 349163 CDS YP_001233660.1 148259533 5161680 574618..575442 1 NC_009484.1 PFAM: sulfotransferase; sulfotransferase 575442 5161680 Acry_0517 Acidiphilium cryptum JF-5 sulfotransferase YP_001233660.1 574618 D 349163 CDS YP_001233661.1 148259534 5161108 575575..575970 1 NC_009484.1 hypothetical protein 575970 5161108 Acry_0518 Acidiphilium cryptum JF-5 hypothetical protein YP_001233661.1 575575 D 349163 CDS YP_001233662.1 148259535 5161109 complement(576040..576570) 1 NC_009484.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 576570 5161109 Acry_0519 Acidiphilium cryptum JF-5 flavin reductase domain-containing protein YP_001233662.1 576040 R 349163 CDS YP_001233663.1 148259536 5160743 complement(576780..578690) 1 NC_009484.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 578690 5160743 Acry_0520 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001233663.1 576780 R 349163 CDS YP_001233664.1 148259537 5160275 578771..579094 1 NC_009484.1 hypothetical protein 579094 5160275 Acry_0521 Acidiphilium cryptum JF-5 hypothetical protein YP_001233664.1 578771 D 349163 CDS YP_001233665.1 148259538 5160276 579253..582597 1 NC_009484.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 582597 5160276 Acry_0522 Acidiphilium cryptum JF-5 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001233665.1 579253 D 349163 CDS YP_001233666.1 148259539 5161473 582788..583468 1 NC_009484.1 hypothetical protein 583468 5161473 Acry_0523 Acidiphilium cryptum JF-5 hypothetical protein YP_001233666.1 582788 D 349163 CDS YP_001233667.1 148259540 5161587 complement(583488..584078) 1 NC_009484.1 hypothetical protein 584078 5161587 Acry_0524 Acidiphilium cryptum JF-5 hypothetical protein YP_001233667.1 583488 R 349163 CDS YP_001233668.1 148259541 5161588 complement(584260..585471) 1 NC_009484.1 hypothetical protein 585471 5161588 Acry_0525 Acidiphilium cryptum JF-5 hypothetical protein YP_001233668.1 584260 R 349163 CDS YP_001233669.1 148259542 5161741 complement(585656..588436) 1 NC_009484.1 SMART: helicase c2; helicase c2 588436 5161741 Acry_0526 Acidiphilium cryptum JF-5 helicase c2 YP_001233669.1 585656 R 349163 CDS YP_001233670.1 148259543 5161749 complement(588484..589119) 1 NC_009484.1 PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein 589119 5161749 Acry_0527 Acidiphilium cryptum JF-5 uracil-DNA glycosylase superfamily protein YP_001233670.1 588484 R 349163 CDS YP_001233671.1 148259544 5161750 complement(589126..589698) 1 NC_009484.1 PFAM: protein of unknown function DUF88; hypothetical protein 589698 5161750 Acry_0528 Acidiphilium cryptum JF-5 hypothetical protein YP_001233671.1 589126 R 349163 CDS YP_001233672.1 148259545 5161581 589890..590306 1 NC_009484.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 590306 5161581 Acry_0529 Acidiphilium cryptum JF-5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001233672.1 589890 D 349163 CDS YP_001233673.1 148259546 5162095 590409..590819 1 NC_009484.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 590819 5162095 Acry_0530 Acidiphilium cryptum JF-5 DNA-directed RNA polymerase subunit omega YP_001233673.1 590409 D 349163 CDS YP_001233674.1 148259547 5160792 590857..593106 1 NC_009484.1 TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 593106 5160792 Acry_0531 Acidiphilium cryptum JF-5 (p)ppGpp synthetase I SpoT/RelA YP_001233674.1 590857 D 349163 CDS YP_001233675.1 148259548 5160793 593152..593556 1 NC_009484.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-acyl-carrier-protein synthase 593556 5160793 Acry_0532 Acidiphilium cryptum JF-5 holo-acyl-carrier-protein synthase YP_001233675.1 593152 D 349163 CDS YP_001233676.1 148259549 5160710 593561..594649 1 NC_009484.1 PFAM: (Uracil-5)-methyltransferase; (uracil-5)-methyltransferase 594649 5160710 Acry_0533 Acidiphilium cryptum JF-5 (uracil-5)-methyltransferase YP_001233676.1 593561 D 349163 CDS YP_001233677.1 148259550 5160562 594890..596464 1 NC_009484.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 596464 5160562 Acry_0534 Acidiphilium cryptum JF-5 2-isopropylmalate synthase YP_001233677.1 594890 D 349163 CDS YP_001233678.1 148259551 5160563 complement(596575..597471) 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 597471 5160563 Acry_0535 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001233678.1 596575 R 349163 CDS YP_001233679.1 148259552 5159731 597678..599195 1 NC_009484.1 hypothetical protein 599195 5159731 Acry_0536 Acidiphilium cryptum JF-5 hypothetical protein YP_001233679.1 597678 D 349163 CDS YP_001233680.1 148259553 5160534 complement(599010..600269) 1 NC_009484.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 600269 5160534 Acry_0537 Acidiphilium cryptum JF-5 FAD dependent oxidoreductase YP_001233680.1 599010 R 349163 CDS YP_001233681.1 148259554 5160535 complement(600275..601615) 1 NC_009484.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 601615 5160535 Acry_0538 Acidiphilium cryptum JF-5 glutamate--putrescine ligase YP_001233681.1 600275 R 349163 CDS YP_001233682.1 148259555 5159761 complement(601751..602827) 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 602827 5159761 Acry_0539 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001233682.1 601751 R 349163 CDS YP_001233683.1 148259556 5160604 complement(602900..603742) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 603742 5160604 Acry_0540 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001233683.1 602900 R 349163 CDS YP_001233684.1 148259557 5160605 complement(603750..604682) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 604682 5160605 Acry_0541 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001233684.1 603750 R 349163 CDS YP_001233685.1 148259558 5159458 complement(604679..605812) 1 NC_009484.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 605812 5159458 Acry_0542 Acidiphilium cryptum JF-5 spermidine/putrescine ABC transporter ATPase YP_001233685.1 604679 R 349163 CDS YP_001233686.1 148259559 5160228 606176..607291 1 NC_009484.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 607291 5160228 Acry_0543 Acidiphilium cryptum JF-5 alanine dehydrogenase YP_001233686.1 606176 D 349163 CDS YP_001233687.1 148259560 5160229 607294..607905 1 NC_009484.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 607905 5160229 Acry_0544 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001233687.1 607294 D 349163 CDS YP_001233688.1 148259561 5160568 608158..609534 1 NC_009484.1 PFAM: aminotransferase class-III; putative aminotransferase 609534 5160568 Acry_0545 Acidiphilium cryptum JF-5 putative aminotransferase YP_001233688.1 608158 D 349163 CDS YP_001233689.1 148259562 5162057 609536..610897 1 NC_009484.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase 610897 5162057 Acry_0546 Acidiphilium cryptum JF-5 glutamine synthetase YP_001233689.1 609536 D 349163 CDS YP_001233690.1 148259563 5162058 complement(610910..611998) 1 NC_009484.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 611998 5162058 Acry_0547 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001233690.1 610910 R 349163 CDS YP_001233691.1 148259564 5162488 complement(612087..613529) 1 NC_009484.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 613529 5162488 Acry_0548 Acidiphilium cryptum JF-5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001233691.1 612087 R 349163 CDS YP_001233692.1 148259565 5161985 613615..614403 1 NC_009484.1 hypothetical protein 614403 5161985 Acry_0549 Acidiphilium cryptum JF-5 hypothetical protein YP_001233692.1 613615 D 349163 CDS YP_001233693.1 148259566 5161986 614400..615323 1 NC_009484.1 hypothetical protein 615323 5161986 Acry_0550 Acidiphilium cryptum JF-5 hypothetical protein YP_001233693.1 614400 D 349163 CDS YP_001233694.1 148259567 5162266 complement(615354..616049) 1 NC_009484.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 616049 5162266 Acry_0551 Acidiphilium cryptum JF-5 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001233694.1 615354 R 349163 CDS YP_001233695.1 148259568 5161895 616305..617255 1 NC_009484.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 617255 lpxC 5161895 lpxC Acidiphilium cryptum JF-5 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001233695.1 616305 D 349163 CDS YP_001233696.1 148259569 5161896 complement(617296..618939) 1 NC_009484.1 TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter transmembrane protein 618939 5161896 Acry_0553 Acidiphilium cryptum JF-5 ABC transporter transmembrane protein YP_001233696.1 617296 R 349163 CDS YP_001233697.1 148259570 5161323 complement(618939..620654) 1 NC_009484.1 TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter 620654 5161323 Acry_0554 Acidiphilium cryptum JF-5 ABC transporter YP_001233697.1 618939 R 349163 CDS YP_001233698.1 148259571 5161487 620823..621659 1 NC_009484.1 TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 621659 5161487 Acry_0555 Acidiphilium cryptum JF-5 pantoate--beta-alanine ligase YP_001233698.1 620823 D 349163 CDS YP_001233699.1 148259572 5161488 621759..622676 1 NC_009484.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 622676 5161488 Acry_0556 Acidiphilium cryptum JF-5 diguanylate phosphodiesterase YP_001233699.1 621759 D 349163 CDS YP_001233700.1 148259573 5160365 622728..623060 1 NC_009484.1 hypothetical protein 623060 5160365 Acry_0557 Acidiphilium cryptum JF-5 hypothetical protein YP_001233700.1 622728 D 349163 CDS YP_001233701.1 148259574 5161274 623060..623542 1 NC_009484.1 hypothetical protein 623542 5161274 Acry_0558 Acidiphilium cryptum JF-5 hypothetical protein YP_001233701.1 623060 D 349163 CDS YP_001233702.1 148259575 5161275 623539..625305 1 NC_009484.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 625305 5161275 Acry_0559 Acidiphilium cryptum JF-5 ABC transporter YP_001233702.1 623539 D 349163 CDS YP_001233703.1 148259576 5160999 625321..626247 1 NC_009484.1 PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 626247 5160999 Acry_0560 Acidiphilium cryptum JF-5 glycerophosphoryl diester phosphodiesterase YP_001233703.1 625321 D 349163 CDS YP_001233704.1 148259577 5160944 627119..628165 1 NC_009484.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 628165 5160944 Acry_0561 Acidiphilium cryptum JF-5 secretion protein HlyD family protein YP_001233704.1 627119 D 349163 CDS YP_001233705.1 148259578 5160945 628162..629712 1 NC_009484.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 629712 5160945 Acry_0562 Acidiphilium cryptum JF-5 EmrB/QacA family drug resistance transporter YP_001233705.1 628162 D 349163 CDS YP_001233706.1 148259579 5160569 629702..631261 1 NC_009484.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 631261 5160569 Acry_0563 Acidiphilium cryptum JF-5 RND efflux system outer membrane lipoprotein YP_001233706.1 629702 D 349163 CDS YP_001233707.1 148259580 5161038 complement(631266..632279) 1 NC_009484.1 PFAM: luciferase family protein; luciferase family protein 632279 5161038 Acry_0564 Acidiphilium cryptum JF-5 luciferase family protein YP_001233707.1 631266 R 349163 CDS YP_001233708.1 148259581 5161039 complement(632365..633594) 1 NC_009484.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 633594 5161039 Acry_0565 Acidiphilium cryptum JF-5 isocitrate dehydrogenase YP_001233708.1 632365 R 349163 CDS YP_001233709.1 148259582 5160034 633710..634438 1 NC_009484.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 634438 pyrE 5160034 pyrE Acidiphilium cryptum JF-5 orotate phosphoribosyltransferase YP_001233709.1 633710 D 349163 CDS YP_001233710.1 148259583 5160716 634908..636041 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 636041 5160716 Acry_0567 Acidiphilium cryptum JF-5 diguanylate cyclase YP_001233710.1 634908 D 349163 CDS YP_001233711.1 148259584 5160545 complement(636115..638898) 1 NC_009484.1 PFAM: glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 protein 638898 5160545 Acry_0568 Acidiphilium cryptum JF-5 glycoside hydrolase family 3 protein YP_001233711.1 636115 R 349163 CDS YP_001233712.1 148259585 5160546 complement(638908..641184) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; type IV pilus assembly PilZ; cellulose synthase 641184 5160546 Acry_0569 Acidiphilium cryptum JF-5 cellulose synthase YP_001233712.1 638908 R 349163 CDS YP_001233713.1 148259586 5160353 complement(641181..642311) 1 NC_009484.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase 642311 5160353 Acry_0570 Acidiphilium cryptum JF-5 endo-1,4-D-glucanase YP_001233713.1 641181 R 349163 CDS YP_001233714.1 148259587 5160004 complement(642316..643050) 1 NC_009484.1 hypothetical protein 643050 5160004 Acry_0571 Acidiphilium cryptum JF-5 hypothetical protein YP_001233714.1 642316 R 349163 CDS YP_001233715.1 148259588 5160005 complement(643047..645353) 1 NC_009484.1 hypothetical protein 645353 5160005 Acry_0572 Acidiphilium cryptum JF-5 hypothetical protein YP_001233715.1 643047 R 349163 CDS YP_001233716.1 148259589 5159801 646186..646458 1 NC_009484.1 hypothetical protein 646458 5159801 Acry_0573 Acidiphilium cryptum JF-5 hypothetical protein YP_001233716.1 646186 D 349163 CDS YP_001233717.1 148259590 5159677 complement(646486..647238) 1 NC_009484.1 PFAM: transcriptional regulator domain protein; two component transcriptional regulator 647238 5159677 Acry_0574 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233717.1 646486 R 349163 CDS YP_001233718.1 148259591 5159678 complement(647467..647802) 1 NC_009484.1 hypothetical protein 647802 5159678 Acry_0575 Acidiphilium cryptum JF-5 hypothetical protein YP_001233718.1 647467 R 349163 CDS YP_001233719.1 148259592 5159980 complement(647763..648470) 1 NC_009484.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 648470 5159980 Acry_0576 Acidiphilium cryptum JF-5 CRP/FNR family transcriptional regulator YP_001233719.1 647763 R 349163 CDS YP_001233720.1 148259593 5162172 648663..649385 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 649385 5162172 Acry_0577 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233720.1 648663 D 349163 CDS YP_001233721.1 148259594 5162173 complement(649401..651299) 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 651299 5162173 Acry_0578 Acidiphilium cryptum JF-5 PAS/PAC sensor hybrid histidine kinase YP_001233721.1 649401 R 349163 CDS YP_001233722.1 148259595 5161440 651580..652041 1 NC_009484.1 PFAM: membrane-flanked domain; membrane-flanked domain-containing protein 652041 5161440 Acry_0579 Acidiphilium cryptum JF-5 membrane-flanked domain-containing protein YP_001233722.1 651580 D 349163 CDS YP_001233723.1 148259596 5160001 complement(652232..653053) 1 NC_009484.1 hypothetical protein 653053 5160001 Acry_0580 Acidiphilium cryptum JF-5 hypothetical protein YP_001233723.1 652232 R 349163 CDS YP_001233724.1 148259597 5160002 653209..654663 1 NC_009484.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; hypothetical protein 654663 5160002 Acry_0581 Acidiphilium cryptum JF-5 hypothetical protein YP_001233724.1 653209 D 349163 CDS YP_001233725.1 148259598 5159998 654707..655846 1 NC_009484.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 655846 recF 5159998 recF Acidiphilium cryptum JF-5 recombination protein F YP_001233725.1 654707 D 349163 CDS YP_001233726.1 148259599 5159482 complement(655896..656825) 1 NC_009484.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin biosynthesis protein RibF 656825 5159482 Acry_0583 Acidiphilium cryptum JF-5 riboflavin biosynthesis protein RibF YP_001233726.1 655896 R 349163 CDS YP_001233727.1 148259600 5159483 complement(656822..657364) 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; dehydratase 657364 5159483 Acry_0584 Acidiphilium cryptum JF-5 dehydratase YP_001233727.1 656822 R 349163 CDS YP_001233728.1 148259601 5162446 complement(657345..658277) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 658277 5162446 Acry_0585 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233728.1 657345 R 349163 CDS YP_001233729.1 148259602 5162034 658402..659577 1 NC_009484.1 hypothetical protein 659577 5162034 Acry_0586 Acidiphilium cryptum JF-5 hypothetical protein YP_001233729.1 658402 D 349163 CDS YP_001233730.1 148259603 5162035 659583..661058 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 661058 5162035 Acry_0587 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233730.1 659583 D 349163 CDS YP_001233731.1 148259604 5162598 661089..662828 1 NC_009484.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 662828 5162598 Acry_0588 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233731.1 661089 D 349163 CDS YP_001233732.1 148259605 5162574 663071..663682 1 NC_009484.1 hypothetical protein 663682 5162574 Acry_0589 Acidiphilium cryptum JF-5 hypothetical protein YP_001233732.1 663071 D 349163 CDS YP_001233733.1 148259606 5162575 663877..665019 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 665019 5162575 Acry_0590 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233733.1 663877 D 349163 CDS YP_001233734.1 148259607 5161805 665025..665795 1 NC_009484.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 665795 5161805 Acry_0591 Acidiphilium cryptum JF-5 glucose-1-phosphate cytidylyltransferase YP_001233734.1 665025 D 349163 CDS YP_001233735.1 148259608 5162557 665792..666868 1 NC_009484.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; CDP-glucose 4,6-dehydratase 666868 5162557 Acry_0592 Acidiphilium cryptum JF-5 CDP-glucose 4,6-dehydratase YP_001233735.1 665792 D 349163 CDS YP_001233736.1 148259609 5162558 666868..667419 1 NC_009484.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 667419 5162558 Acry_0593 Acidiphilium cryptum JF-5 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001233736.1 666868 D 349163 CDS YP_001233737.1 148259610 5161547 667416..668639 1 NC_009484.1 PFAM: Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; C-methyltransferase 668639 5161547 Acry_0594 Acidiphilium cryptum JF-5 C-methyltransferase YP_001233737.1 667416 D 349163 CDS YP_001233738.1 148259611 5162585 668788..669804 1 NC_009484.1 hypothetical protein 669804 5162585 Acry_0595 Acidiphilium cryptum JF-5 hypothetical protein YP_001233738.1 668788 D 349163 CDS YP_001233739.1 148259612 5162586 669955..670797 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 670797 5162586 Acry_0596 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001233739.1 669955 D 349163 CDS YP_001233740.1 148259613 5162552 670924..671694 1 NC_009484.1 PFAM: Cephalosporin hydroxylase; cephalosporin hydroxylase 671694 5162552 Acry_0597 Acidiphilium cryptum JF-5 cephalosporin hydroxylase YP_001233740.1 670924 D 349163 CDS YP_001233741.1 148259614 5161330 672876..674489 1 NC_009484.1 PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 674489 5161330 Acry_0599 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001233741.1 672876 D 349163 CDS YP_001233742.1 148259615 5161452 674489..675043 1 NC_009484.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 675043 5161452 Acry_0600 Acidiphilium cryptum JF-5 electron transport protein SCO1/SenC YP_001233742.1 674489 D 349163 CDS YP_001233743.1 148259616 5161463 675332..676141 1 NC_009484.1 hypothetical protein 676141 5161463 Acry_0601 Acidiphilium cryptum JF-5 hypothetical protein YP_001233743.1 675332 D 349163 CDS YP_001233744.1 148259617 5162256 676190..677011 1 NC_009484.1 hypothetical protein 677011 5162256 Acry_0602 Acidiphilium cryptum JF-5 hypothetical protein YP_001233744.1 676190 D 349163 CDS YP_001233745.1 148259618 5162257 677370..678323 1 NC_009484.1 formate hydrogenlyase subunit 4-like protein 678323 5162257 Acry_0603 Acidiphilium cryptum JF-5 formate hydrogenlyase subunit 4-like protein YP_001233745.1 677370 D 349163 CDS YP_001233746.1 148259619 5161244 679005..680525 1 NC_009484.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 680525 5161244 Acry_0605 Acidiphilium cryptum JF-5 NADH dehydrogenase (quinone) YP_001233746.1 679005 D 349163 CDS YP_001233747.1 148259620 5161818 680528..681958 1 NC_009484.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH-ubiquinone oxidoreductase subunit 49kDa 681958 5161818 Acry_0606 Acidiphilium cryptum JF-5 NADH-ubiquinone oxidoreductase subunit 49kDa YP_001233747.1 680528 D 349163 CDS YP_001233748.1 148259621 5161839 681972..682766 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 682766 5161839 Acry_0607 Acidiphilium cryptum JF-5 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001233748.1 681972 D 349163 CDS YP_001233749.1 148259622 5161840 682756..684732 1 NC_009484.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH/ubiquinone/plastoquinone (complex I) 684732 5161840 Acry_0608 Acidiphilium cryptum JF-5 NADH/ubiquinone/plastoquinone (complex I) YP_001233749.1 682756 D 349163 CDS YP_001233750.1 148259623 5161802 684854..685201 1 NC_009484.1 PFAM: protein of unknown function DUF190; hypothetical protein 685201 5161802 Acry_0609 Acidiphilium cryptum JF-5 hypothetical protein YP_001233750.1 684854 D 349163 CDS YP_001233751.1 148259624 5161925 685232..685648 1 NC_009484.1 PFAM: protein of unknown function DUF190; hypothetical protein 685648 5161925 Acry_0610 Acidiphilium cryptum JF-5 hypothetical protein YP_001233751.1 685232 D 349163 CDS YP_001233752.1 148259625 5161926 complement(685864..686769) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase 686769 5161926 Acry_0611 Acidiphilium cryptum JF-5 dTDP-4-dehydrorhamnose reductase YP_001233752.1 685864 R 349163 CDS YP_001233753.1 148259626 5160232 complement(686771..687325) 1 NC_009484.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 687325 5160232 Acry_0612 Acidiphilium cryptum JF-5 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001233753.1 686771 R 349163 CDS YP_001233754.1 148259627 5160156 complement(687322..688203) 1 NC_009484.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 688203 5160156 Acry_0613 Acidiphilium cryptum JF-5 glucose-1-phosphate thymidylyltransferase YP_001233754.1 687322 R 349163 CDS YP_001233755.1 148259628 5160157 complement(688200..689270) 1 NC_009484.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase 689270 5160157 Acry_0614 Acidiphilium cryptum JF-5 dTDP-glucose 4,6-dehydratase YP_001233755.1 688200 R 349163 CDS YP_001233756.1 148259629 5161252 complement(689593..693336) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; group 1 glycosyl transferase 693336 5161252 Acry_0615 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233756.1 689593 R 349163 CDS YP_001233757.1 148259630 5161245 complement(693352..694995) 1 NC_009484.1 PFAM: Amidase; amidase 694995 5161245 Acry_0616 Acidiphilium cryptum JF-5 amidase YP_001233757.1 693352 R 349163 CDS YP_001233758.1 148259631 5161246 695061..696251 1 NC_009484.1 deoxyribodipyrimidine photolyase-like protein 696251 5161246 Acry_0617 Acidiphilium cryptum JF-5 deoxyribodipyrimidine photolyase-like protein YP_001233758.1 695061 D 349163 CDS YP_001233759.1 148259632 5160935 complement(696259..697035) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 697035 5160935 Acry_0618 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233759.1 696259 R 349163 CDS YP_001233760.1 148259633 5161040 697154..698794 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 698794 5161040 Acry_0619 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001233760.1 697154 D 349163 CDS YP_001233761.1 148259634 5161041 698919..700418 1 NC_009484.1 PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 700418 5161041 Acry_0620 Acidiphilium cryptum JF-5 2-methylcitrate dehydratase YP_001233761.1 698919 D 349163 CDS YP_001233762.1 148259635 5160994 700438..701589 1 NC_009484.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 701589 5160994 Acry_0621 Acidiphilium cryptum JF-5 methylcitrate synthase YP_001233762.1 700438 D 349163 CDS YP_001233763.1 148259636 5160041 701600..702514 1 NC_009484.1 TIGRFAM: methylisocitrate lyase; methylisocitrate lyase 702514 5160041 Acry_0622 Acidiphilium cryptum JF-5 methylisocitrate lyase YP_001233763.1 701600 D 349163 CDS YP_001233764.1 148259637 5160042 702542..703717 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 703717 5160042 Acry_0623 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001233764.1 702542 D 349163 CDS YP_001233765.1 148259638 5160750 703714..704811 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 704811 5160750 Acry_0624 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001233765.1 703714 D 349163 CDS YP_001233766.1 148259639 5162333 704887..705786 1 NC_009484.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 705786 5162333 Acry_0625 Acidiphilium cryptum JF-5 3-hydroxyisobutyrate dehydrogenase YP_001233766.1 704887 D 349163 CDS YP_001233767.1 148259640 5162334 705828..707549 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 707549 5162334 Acry_0626 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001233767.1 705828 D 349163 CDS YP_001233768.1 148259641 5160530 707585..708352 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 708352 5160530 Acry_0627 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233768.1 707585 D 349163 CDS YP_001233769.1 148259642 5161536 complement(708635..710383) 1 NC_009484.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein; DNA mismatch repair protein, C-terminal domain protein; DNA mismatch repair protein MutL 710383 5161536 Acry_0628 Acidiphilium cryptum JF-5 DNA mismatch repair protein MutL YP_001233769.1 708635 R 349163 CDS YP_001233770.1 148259643 5160139 710443..711351 1 NC_009484.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 711351 5160139 Acry_0629 Acidiphilium cryptum JF-5 alpha/beta hydrolase domain-containing protein YP_001233770.1 710443 D 349163 CDS YP_001233771.1 148259644 5160640 complement(711311..712540) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 712540 5160640 Acry_0630 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233771.1 711311 R 349163 CDS YP_001233772.1 148259645 5159777 complement(712632..713201) 1 NC_009484.1 hypothetical protein 713201 5159777 Acry_0631 Acidiphilium cryptum JF-5 hypothetical protein YP_001233772.1 712632 R 349163 CDS YP_001233773.1 148259646 5159778 complement(713198..713731) 1 NC_009484.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 713731 5159778 Acry_0632 Acidiphilium cryptum JF-5 lipoprotein signal peptidase YP_001233773.1 713198 R 349163 CDS YP_001233774.1 148259647 5159926 complement(713728..716556) 1 NC_009484.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 716556 ileS 5159926 ileS Acidiphilium cryptum JF-5 isoleucyl-tRNA synthetase YP_001233774.1 713728 R 349163 CDS YP_001233775.1 148259648 5161379 717744..719003 1 NC_009484.1 hypothetical protein 719003 5161379 Acry_0635 Acidiphilium cryptum JF-5 hypothetical protein YP_001233775.1 717744 D 349163 CDS YP_001233776.1 148259649 5159695 719000..720313 1 NC_009484.1 hypothetical protein 720313 5159695 Acry_0636 Acidiphilium cryptum JF-5 hypothetical protein YP_001233776.1 719000 D 349163 CDS YP_001233777.1 148259650 5159672 720310..721593 1 NC_009484.1 Ni Fe-hydrogenase III large subunit-like protein 721593 5159672 Acry_0637 Acidiphilium cryptum JF-5 Ni Fe-hydrogenase III large subunit-like protein YP_001233777.1 720310 D 349163 CDS YP_001233778.1 148259651 5159899 721586..722080 1 NC_009484.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 722080 5159899 Acry_0638 Acidiphilium cryptum JF-5 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001233778.1 721586 D 349163 CDS YP_001233779.1 148259652 5159900 722073..722672 1 NC_009484.1 PFAM: ribonuclease HII/HIII; ribonuclease H 722672 5159900 Acry_0639 Acidiphilium cryptum JF-5 ribonuclease H YP_001233779.1 722073 D 349163 CDS YP_001233780.1 148259653 5160573 complement(722692..722985) 1 NC_009484.1 hypothetical protein 722985 5160573 Acry_0640 Acidiphilium cryptum JF-5 hypothetical protein YP_001233780.1 722692 R 349163 CDS YP_001233781.1 148259654 5160790 complement(723209..724993) 1 NC_009484.1 hypothetical protein 724993 5160790 Acry_0641 Acidiphilium cryptum JF-5 hypothetical protein YP_001233781.1 723209 R 349163 CDS YP_001233782.1 148259655 5160791 complement(725177..726040) 1 NC_009484.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 726040 5160791 Acry_0642 Acidiphilium cryptum JF-5 prephenate dehydratase YP_001233782.1 725177 R 349163 CDS YP_001233783.1 148259656 5160965 complement(726037..726780) 1 NC_009484.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 726780 5160965 Acry_0643 Acidiphilium cryptum JF-5 3-deoxy-manno-octulosonate cytidylyltransferase YP_001233783.1 726037 R 349163 CDS YP_001233784.1 148259657 5160946 726873..728297 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 728297 5160946 Acry_0644 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001233784.1 726873 D 349163 CDS YP_001233785.1 148259658 5162571 728294..729064 1 NC_009484.1 PFAM: inositol monophosphatase; inositol monophosphatase 729064 5162571 Acry_0645 Acidiphilium cryptum JF-5 inositol monophosphatase YP_001233785.1 728294 D 349163 CDS YP_001233786.1 148259659 5162572 729061..729501 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 729501 5162572 Acry_0646 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001233786.1 729061 D 349163 CDS YP_001233787.1 148259660 5162067 complement(729508..730572) 1 NC_009484.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 730572 5162067 Acry_0647 Acidiphilium cryptum JF-5 tartrate dehydrogenase YP_001233787.1 729508 R 349163 CDS YP_001233788.1 148259661 5162049 complement(730572..731981) 1 NC_009484.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 731981 5162049 Acry_0648 Acidiphilium cryptum JF-5 amino acid permease-associated protein YP_001233788.1 730572 R 349163 CDS YP_001233789.1 148259662 5162050 complement(732034..732921) 1 NC_009484.1 PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 732921 5162050 Acry_0649 Acidiphilium cryptum JF-5 lipid A biosynthesis acyltransferase YP_001233789.1 732034 R 349163 CDS YP_001233790.1 148259663 5162008 complement(732918..733865) 1 NC_009484.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 733865 5162008 Acry_0650 Acidiphilium cryptum JF-5 tetraacyldisaccharide 4'-kinase YP_001233790.1 732918 R 349163 CDS YP_001233791.1 148259664 5162023 complement(733865..735103) 1 NC_009484.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 735103 5162023 Acry_0651 Acidiphilium cryptum JF-5 3-deoxy-D-manno-octulosonic-acid transferase YP_001233791.1 733865 R 349163 CDS YP_001233792.1 148259665 5162024 complement(735088..735807) 1 NC_009484.1 PFAM: protein of unknown function DUF374; hypothetical protein 735807 5162024 Acry_0652 Acidiphilium cryptum JF-5 hypothetical protein YP_001233792.1 735088 R 349163 CDS YP_001233793.1 148259666 5162209 complement(735804..736748) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 736748 5162209 Acry_0653 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001233793.1 735804 R 349163 CDS YP_001233794.1 148259667 5162280 736906..737265 1 NC_009484.1 hypothetical protein 737265 5162280 Acry_0654 Acidiphilium cryptum JF-5 hypothetical protein YP_001233794.1 736906 D 349163 CDS YP_001233795.1 148259668 5162281 737296..737712 1 NC_009484.1 hypothetical protein 737712 5162281 Acry_0655 Acidiphilium cryptum JF-5 hypothetical protein YP_001233795.1 737296 D 349163 CDS YP_001233796.1 148259669 5162447 737807..738664 1 NC_009484.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 738664 5162447 Acry_0656 Acidiphilium cryptum JF-5 rod shape-determining protein MreC YP_001233796.1 737807 D 349163 CDS YP_001233797.1 148259670 5162391 738684..739211 1 NC_009484.1 hypothetical protein 739211 5162391 Acry_0657 Acidiphilium cryptum JF-5 hypothetical protein YP_001233797.1 738684 D 349163 CDS YP_001233798.1 148259671 5162392 739180..741099 1 NC_009484.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 741099 5162392 Acry_0658 Acidiphilium cryptum JF-5 peptidoglycan glycosyltransferase YP_001233798.1 739180 D 349163 CDS YP_001233799.1 148259672 5162428 741096..742256 1 NC_009484.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 742256 5162428 Acry_0659 Acidiphilium cryptum JF-5 rod shape-determining protein RodA YP_001233799.1 741096 D 349163 CDS YP_001233800.1 148259673 5159958 742463..743692 1 NC_009484.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 743692 5159958 Acry_0660 Acidiphilium cryptum JF-5 nitric oxide dioxygenase YP_001233800.1 742463 D 349163 CDS YP_001233801.1 148259674 5159959 743787..744755 1 NC_009484.1 hypothetical protein 744755 5159959 Acry_0661 Acidiphilium cryptum JF-5 hypothetical protein YP_001233801.1 743787 D 349163 CDS YP_001233802.1 148259675 5160905 744766..746412 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 746412 5160905 Acry_0662 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001233802.1 744766 D 349163 CDS YP_001233803.1 148259676 5161678 746481..750992 1 NC_009484.1 hypothetical protein 750992 5161678 Acry_0663 Acidiphilium cryptum JF-5 hypothetical protein YP_001233803.1 746481 D 349163 CDS YP_001233804.1 148259677 5161679 751161..751775 1 NC_009484.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 751775 rpsD 5161679 rpsD Acidiphilium cryptum JF-5 30S ribosomal protein S4 YP_001233804.1 751161 D 349163 CDS YP_001233805.1 148259678 5161668 complement(752071..752883) 1 NC_009484.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 752883 5161668 Acry_0665 Acidiphilium cryptum JF-5 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001233805.1 752071 R 349163 CDS YP_001233806.1 148259679 5162316 complement(752922..753545) 1 NC_009484.1 PFAM: carbonic anhydrase; carbonate dehydratase 753545 5162316 Acry_0666 Acidiphilium cryptum JF-5 carbonate dehydratase YP_001233806.1 752922 R 349163 CDS YP_001233807.1 148259680 5162317 753873..754766 1 NC_009484.1 SMART: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 754766 5162317 Acry_0667 Acidiphilium cryptum JF-5 helix-turn-helix domain-containing protein YP_001233807.1 753873 D 349163 CDS YP_001233808.1 148259681 5161277 754888..757854 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon monoxide dehydrogenase subunit G; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 757854 5161277 Acry_0668 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001233808.1 754888 D 349163 CDS YP_001233809.1 148259682 5161393 757851..758669 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 758669 5161393 Acry_0669 Acidiphilium cryptum JF-5 molybdopterin dehydrogenase YP_001233809.1 757851 D 349163 CDS YP_001233810.1 148259683 5161394 758666..759184 1 NC_009484.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 759184 5161394 Acry_0670 Acidiphilium cryptum JF-5 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001233810.1 758666 D 349163 CDS YP_001233811.1 148259684 5161306 759177..760730 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 760730 5161306 Acry_0671 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001233811.1 759177 D 349163 CDS YP_001233812.1 148259685 5161131 760727..761524 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 761524 5161131 Acry_0672 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001233812.1 760727 D 349163 CDS YP_001233813.1 148259686 5161132 761649..762332 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 762332 5161132 Acry_0673 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001233813.1 761649 D 349163 CDS YP_001233814.1 148259687 5160538 762345..762668 1 NC_009484.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 762668 5160538 Acry_0674 Acidiphilium cryptum JF-5 antibiotic biosynthesis monooxygenase YP_001233814.1 762345 D 349163 CDS YP_001233815.1 148259688 5162376 762752..763213 1 NC_009484.1 PFAM: protein of unknown function DUF1348; hypothetical protein 763213 5162376 Acry_0675 Acidiphilium cryptum JF-5 hypothetical protein YP_001233815.1 762752 D 349163 CDS YP_001233816.1 148259689 5162377 763229..763804 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 763804 5162377 Acry_0676 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001233816.1 763229 D 349163 CDS YP_001233817.1 148259690 5159669 763844..764740 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 764740 5159669 Acry_0677 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001233817.1 763844 D 349163 CDS YP_001233818.1 148259691 5160971 complement(764754..766151) 1 NC_009484.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 766151 5160971 Acry_0678 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001233818.1 764754 R 349163 CDS YP_001233819.1 148259692 5160972 766333..766848 1 NC_009484.1 PFAM: protein of unknown function DUF983; hypothetical protein 766848 5160972 Acry_0679 Acidiphilium cryptum JF-5 hypothetical protein YP_001233819.1 766333 D 349163 CDS YP_001233820.1 148259693 5160681 766845..767399 1 NC_009484.1 hypothetical protein 767399 5160681 Acry_0680 Acidiphilium cryptum JF-5 hypothetical protein YP_001233820.1 766845 D 349163 CDS YP_001233821.1 148259694 5160834 767465..768910 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer 768910 5160834 Acry_0681 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001233821.1 767465 D 349163 CDS YP_001233822.1 148259695 5160771 768963..769640 1 NC_009484.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 769640 aat 5160771 aat Acidiphilium cryptum JF-5 leucyl/phenylalanyl-tRNA--protein transferase YP_001233822.1 768963 D 349163 CDS YP_001233823.1 148259696 5160772 769821..770660 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein 770660 5160772 Acry_0683 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001233823.1 769821 D 349163 CDS YP_001233824.1 148259697 5160878 770738..771490 1 NC_009484.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 771490 5160878 Acry_0684 Acidiphilium cryptum JF-5 polar amino acid ABC transporter inner membrane subunit YP_001233824.1 770738 D 349163 CDS YP_001233825.1 148259698 5160918 771487..772254 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 772254 5160918 Acry_0685 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233825.1 771487 D 349163 CDS YP_001233826.1 148259699 5160919 complement(772259..773296) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 773296 5160919 Acry_0686 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001233826.1 772259 R 349163 CDS YP_001233827.1 148259700 5160031 complement(773304..774290) 1 NC_009484.1 hypothetical protein 774290 5160031 Acry_0687 Acidiphilium cryptum JF-5 hypothetical protein YP_001233827.1 773304 R 349163 CDS YP_001233828.1 148259701 5160854 complement(774696..775199) 1 NC_009484.1 hypothetical protein 775199 5160854 Acry_0688 Acidiphilium cryptum JF-5 hypothetical protein YP_001233828.1 774696 R 349163 CDS YP_001233829.1 148259702 5160855 775370..775699 1 NC_009484.1 hypothetical protein 775699 5160855 Acry_0689 Acidiphilium cryptum JF-5 hypothetical protein YP_001233829.1 775370 D 349163 CDS YP_001233830.1 148259703 5159790 775828..776757 1 NC_009484.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 776757 5159790 Acry_0690 Acidiphilium cryptum JF-5 glycine betaine ABC transporter substrate-binding protein YP_001233830.1 775828 D 349163 CDS YP_001233831.1 148259704 5160608 complement(776809..777921) 1 NC_009484.1 hypothetical protein 777921 5160608 Acry_0691 Acidiphilium cryptum JF-5 hypothetical protein YP_001233831.1 776809 R 349163 CDS YP_001233832.1 148259705 5160609 complement(778081..778278) 1 NC_009484.1 hypothetical protein 778278 5160609 Acry_0692 Acidiphilium cryptum JF-5 hypothetical protein YP_001233832.1 778081 R 349163 CDS YP_001233833.1 148259706 5160127 complement(778414..778956) 1 NC_009484.1 hypothetical protein 778956 5160127 Acry_0693 Acidiphilium cryptum JF-5 hypothetical protein YP_001233833.1 778414 R 349163 CDS YP_001233834.1 148259707 5160636 779014..779334 1 NC_009484.1 hypothetical protein 779334 5160636 Acry_0694 Acidiphilium cryptum JF-5 hypothetical protein YP_001233834.1 779014 D 349163 CDS YP_001233835.1 148259708 5161380 complement(779788..780099) 1 NC_009484.1 PFAM: ETC complex I subunit conserved region; ETC complex I subunit region 780099 5161380 Acry_0695 Acidiphilium cryptum JF-5 ETC complex I subunit region YP_001233835.1 779788 R 349163 CDS YP_001233836.1 148259709 5161526 complement(780247..780732) 1 NC_009484.1 PFAM: protein of unknown function DUF192; hypothetical protein 780732 5161526 Acry_0696 Acidiphilium cryptum JF-5 hypothetical protein YP_001233836.1 780247 R 349163 CDS YP_001233837.1 148259710 5160068 complement(780752..781825) 1 NC_009484.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 781825 5160068 Acry_0697 Acidiphilium cryptum JF-5 histone deacetylase superfamily protein YP_001233837.1 780752 R 349163 CDS YP_001233838.1 148259711 5160069 781892..783472 1 NC_009484.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; peptide chain release factor 3 783472 5160069 Acry_0698 Acidiphilium cryptum JF-5 peptide chain release factor 3 YP_001233838.1 781892 D 349163 CDS YP_001233839.1 148259712 5159897 783694..784440 1 NC_009484.1 recombinase B 784440 5159897 Acry_0699 Acidiphilium cryptum JF-5 recombinase B YP_001233839.1 783694 D 349163 CDS YP_001233840.1 148259713 5160242 complement(784498..784749) 1 NC_009484.1 hypothetical protein 784749 5160242 Acry_0700 Acidiphilium cryptum JF-5 hypothetical protein YP_001233840.1 784498 R 349163 CDS YP_001233841.1 148259714 5160243 784756..785052 1 NC_009484.1 hypothetical protein 785052 5160243 Acry_0701 Acidiphilium cryptum JF-5 hypothetical protein YP_001233841.1 784756 D 349163 CDS YP_001233842.1 148259715 5159578 complement(785167..785583) 1 NC_009484.1 hypothetical protein 785583 5159578 Acry_0702 Acidiphilium cryptum JF-5 hypothetical protein YP_001233842.1 785167 R 349163 CDS YP_001233843.1 148259716 5159956 785696..786157 1 NC_009484.1 hypothetical protein 786157 5159956 Acry_0703 Acidiphilium cryptum JF-5 hypothetical protein YP_001233843.1 785696 D 349163 CDS YP_001233844.1 148259717 5159957 complement(786201..787562) 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 787562 5159957 Acry_0704 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001233844.1 786201 R 349163 CDS YP_001233845.1 148259718 5160128 complement(787525..787863) 1 NC_009484.1 hypothetical protein 787863 5160128 Acry_0705 Acidiphilium cryptum JF-5 hypothetical protein YP_001233845.1 787525 R 349163 CDS YP_001233846.1 148259719 5159497 788078..788884 1 NC_009484.1 hypothetical protein 788884 5159497 Acry_0706 Acidiphilium cryptum JF-5 hypothetical protein YP_001233846.1 788078 D 349163 CDS YP_001233847.1 148259720 5159498 788881..790440 1 NC_009484.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 790440 lysK 5159498 lysK Acidiphilium cryptum JF-5 lysyl-tRNA synthetase YP_001233847.1 788881 D 349163 CDS YP_001233848.1 148259721 5159975 790955..792652 1 NC_009484.1 TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K+ transporting ATPase, A subunit; potassium-transporting ATPase subunit A 792652 5159975 Acry_0708 Acidiphilium cryptum JF-5 potassium-transporting ATPase subunit A YP_001233848.1 790955 D 349163 CDS YP_001233849.1 148259722 5159614 792664..794700 1 NC_009484.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; K+-transporting ATPase subunit B 794700 5159614 Acry_0709 Acidiphilium cryptum JF-5 K+-transporting ATPase subunit B YP_001233849.1 792664 D 349163 CDS YP_001233850.1 148259723 5159615 794716..795315 1 NC_009484.1 TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase, C subunit 795315 5159615 Acry_0710 Acidiphilium cryptum JF-5 potassium-transporting ATPase, C subunit YP_001233850.1 794716 D 349163 CDS YP_001233851.1 148259724 5162441 795332..795832 1 NC_009484.1 hypothetical protein 795832 5162441 Acry_0711 Acidiphilium cryptum JF-5 hypothetical protein YP_001233851.1 795332 D 349163 CDS YP_001233852.1 148259725 5159708 795883..796176 1 NC_009484.1 hypothetical protein 796176 5159708 Acry_0712 Acidiphilium cryptum JF-5 hypothetical protein YP_001233852.1 795883 D 349163 CDS YP_001233853.1 148259726 5159709 796432..799035 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 799035 5159709 Acry_0713 Acidiphilium cryptum JF-5 osmosensitive K+ channel signal transduction histidine kinase YP_001233853.1 796432 D 349163 CDS YP_001233854.1 148259727 5161623 799032..799727 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 799727 5161623 Acry_0714 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233854.1 799032 D 349163 CDS YP_001233855.1 148259728 5159509 complement(799712..800677) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 800677 5159509 Acry_0715 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001233855.1 799712 R 349163 CDS YP_001233856.1 148259729 5159510 800721..801470 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 801470 5159510 Acry_0716 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233856.1 800721 D 349163 CDS YP_001233857.1 148259730 5159884 801500..802396 1 NC_009484.1 PFAM: Transketolase domain protein; transketolase domain-containing protein 802396 5159884 Acry_0717 Acidiphilium cryptum JF-5 transketolase domain-containing protein YP_001233857.1 801500 D 349163 CDS YP_001233858.1 148259731 5159550 802396..803400 1 NC_009484.1 PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 803400 5159550 Acry_0718 Acidiphilium cryptum JF-5 transketolase, central region YP_001233858.1 802396 D 349163 CDS YP_001233859.1 148259732 5161922 803452..804468 1 NC_009484.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 804468 5161922 Acry_0719 Acidiphilium cryptum JF-5 TRAP dicarboxylate transporter subunit DctP YP_001233859.1 803452 D 349163 CDS YP_001233860.1 148259733 5161923 804590..806431 1 NC_009484.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 806431 5161923 Acry_0720 Acidiphilium cryptum JF-5 TRAP C4-dicarboxylate transport system permease DctM YP_001233860.1 804590 D 349163 CDS YP_001233861.1 148259734 5159911 complement(806441..807190) 1 NC_009484.1 hypothetical protein 807190 5159911 Acry_0721 Acidiphilium cryptum JF-5 hypothetical protein YP_001233861.1 806441 R 349163 CDS YP_001233862.1 148259735 5161174 complement(807187..808362) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 808362 5161174 Acry_0722 Acidiphilium cryptum JF-5 major facilitator transporter YP_001233862.1 807187 R 349163 CDS YP_001233863.1 148259736 5161175 complement(808362..809210) 1 NC_009484.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 809210 5161175 Acry_0723 Acidiphilium cryptum JF-5 undecaprenyl pyrophosphate phosphatase YP_001233863.1 808362 R 349163 CDS YP_001233864.1 148259737 5162531 809487..810530 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 810530 5162531 Acry_0724 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001233864.1 809487 D 349163 CDS YP_001233865.1 148259738 5162093 complement(810525..810962) 1 NC_009484.1 PFAM: Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 810962 5162093 Acry_0725 Acidiphilium cryptum JF-5 Fe-S metabolism associated SufE YP_001233865.1 810525 R 349163 CDS YP_001233866.1 148259739 5162094 complement(810959..812212) 1 NC_009484.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 812212 5162094 Acry_0726 Acidiphilium cryptum JF-5 tyrosyl-tRNA synthetase YP_001233866.1 810959 R 349163 CDS YP_001233867.1 148259740 5161572 complement(812256..813575) 1 NC_009484.1 hypothetical protein 813575 5161572 Acry_0727 Acidiphilium cryptum JF-5 hypothetical protein YP_001233867.1 812256 R 349163 CDS YP_001233868.1 148259741 5162195 813596..814672 1 NC_009484.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 814672 anmK 5162195 anmK Acidiphilium cryptum JF-5 anhydro-N-acetylmuramic acid kinase YP_001233868.1 813596 D 349163 CDS YP_001233869.1 148259742 5162196 complement(814685..817360) 1 NC_009484.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 817360 5162196 Acry_0729 Acidiphilium cryptum JF-5 DNA topoisomerase I YP_001233869.1 814685 R 349163 CDS YP_001233870.1 148259743 5162533 complement(817379..818500) 1 NC_009484.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 818500 5162533 Acry_0730 Acidiphilium cryptum JF-5 DNA protecting protein DprA YP_001233870.1 817379 R 349163 CDS YP_001233871.1 148259744 5161500 complement(819072..820358) 1 NC_009484.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 820358 5161500 Acry_0732 Acidiphilium cryptum JF-5 dihydroorotase, multifunctional complex type YP_001233871.1 819072 R 349163 CDS YP_001233872.1 148259745 5162211 complement(820351..821286) 1 NC_009484.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 821286 pyrB 5162211 pyrB Acidiphilium cryptum JF-5 aspartate carbamoyltransferase catalytic subunit YP_001233872.1 820351 R 349163 CDS YP_001233873.1 148259746 5162277 complement(821332..822003) 1 NC_009484.1 PFAM: peptidase S24, S26A and S26B; putative phage repressor 822003 5162277 Acry_0734 Acidiphilium cryptum JF-5 putative phage repressor YP_001233873.1 821332 R 349163 CDS YP_001233874.1 148259747 5162253 822257..822487 1 NC_009484.1 hypothetical protein 822487 5162253 Acry_0735 Acidiphilium cryptum JF-5 hypothetical protein YP_001233874.1 822257 D 349163 CDS YP_001233875.1 148259748 5162254 822568..823368 1 NC_009484.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 823368 5162254 Acry_0736 Acidiphilium cryptum JF-5 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001233875.1 822568 D 349163 CDS YP_001233876.1 148259749 5162532 complement(823379..824602) 1 NC_009484.1 hypothetical protein 824602 5162532 Acry_0737 Acidiphilium cryptum JF-5 hypothetical protein YP_001233876.1 823379 R 349163 CDS YP_001233877.1 148259750 5161501 complement(825168..826184) 1 NC_009484.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 826184 nrdF 5161501 nrdF Acidiphilium cryptum JF-5 ribonucleotide-diphosphate reductase subunit beta YP_001233877.1 825168 R 349163 CDS YP_001233878.1 148259751 5162551 complement(826227..828113) 1 NC_009484.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 828113 5162551 Acry_0739 Acidiphilium cryptum JF-5 ribonucleotide-diphosphate reductase subunit alpha YP_001233878.1 826227 R 349163 CDS YP_001233879.1 148259752 5161239 complement(828392..829594) 1 NC_009484.1 PFAM: aminotransferase, class I and II; class I and II aminotransferase 829594 5161239 Acry_0740 Acidiphilium cryptum JF-5 class I and II aminotransferase YP_001233879.1 828392 R 349163 CDS YP_001233880.1 148259753 5159455 829992..830873 1 NC_009484.1 PFAM: ABC-2 type transporter; ABC-2 type transporter 830873 5159455 Acry_0741 Acidiphilium cryptum JF-5 ABC-2 type transporter YP_001233880.1 829992 D 349163 CDS YP_001233881.1 148259754 5159711 830877..831686 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 831686 5159711 Acry_0742 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233881.1 830877 D 349163 CDS YP_001233882.1 148259755 5160328 complement(831744..834047) 1 NC_009484.1 hypothetical protein 834047 5160328 Acry_0743 Acidiphilium cryptum JF-5 hypothetical protein YP_001233882.1 831744 R 349163 CDS YP_001233883.1 148259756 5160355 complement(834047..835363) 1 NC_009484.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 835363 5160355 Acry_0744 Acidiphilium cryptum JF-5 diaminopimelate decarboxylase YP_001233883.1 834047 R 349163 CDS YP_001233884.1 148259757 5160356 complement(835485..836900) 1 NC_009484.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 836900 5160356 Acry_0745 Acidiphilium cryptum JF-5 argininosuccinate lyase YP_001233884.1 835485 R 349163 CDS YP_001233885.1 148259758 5162212 836929..837531 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 837531 5162212 Acry_0746 Acidiphilium cryptum JF-5 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_001233885.1 836929 D 349163 CDS YP_001233886.1 148259759 5159463 837607..838836 1 NC_009484.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 838836 5159463 Acry_0747 Acidiphilium cryptum JF-5 argininosuccinate synthase YP_001233886.1 837607 D 349163 CDS YP_001233887.1 148259760 5159464 838849..839238 1 NC_009484.1 TIGRFAM: TonB family protein; TonB family protein 839238 5159464 Acry_0748 Acidiphilium cryptum JF-5 TonB family protein YP_001233887.1 838849 D 349163 CDS YP_001233888.1 148259761 5159755 839313..839837 1 NC_009484.1 hypothetical protein 839837 5159755 Acry_0749 Acidiphilium cryptum JF-5 hypothetical protein YP_001233888.1 839313 D 349163 CDS YP_001233889.1 148259762 5161628 complement(839943..841298) 1 NC_009484.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 841298 engA 5161628 engA Acidiphilium cryptum JF-5 GTP-binding protein EngA YP_001233889.1 839943 R 349163 CDS YP_001233890.1 148259763 5161629 complement(841295..842656) 1 NC_009484.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 842656 5161629 Acry_0751 Acidiphilium cryptum JF-5 Pyrrolo-quinoline quinone YP_001233890.1 841295 R 349163 CDS YP_001233891.1 148259764 5162078 complement(842653..843396) 1 NC_009484.1 hypothetical protein 843396 5162078 Acry_0752 Acidiphilium cryptum JF-5 hypothetical protein YP_001233891.1 842653 R 349163 CDS YP_001233892.1 148259765 5162074 843413..843823 1 NC_009484.1 hypothetical protein 843823 5162074 Acry_0753 Acidiphilium cryptum JF-5 hypothetical protein YP_001233892.1 843413 D 349163 CDS YP_001233893.1 148259766 5162075 complement(843981..845708) 1 NC_009484.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 845708 rpsA 5162075 rpsA Acidiphilium cryptum JF-5 30S ribosomal protein S1 YP_001233893.1 843981 R 349163 CDS YP_001233894.1 148259767 5161969 845988..846935 1 NC_009484.1 DNA uptake lipoprotein-like protein 846935 5161969 Acry_0755 Acidiphilium cryptum JF-5 DNA uptake lipoprotein-like protein YP_001233894.1 845988 D 349163 CDS YP_001233895.1 148259768 5161426 846955..848634 1 NC_009484.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 848634 5161426 Acry_0756 Acidiphilium cryptum JF-5 DNA repair protein RecN YP_001233895.1 846955 D 349163 CDS YP_001233896.1 148259769 5160952 848631..850679 1 NC_009484.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; NAD-dependent DNA ligase 850679 5160952 Acry_0757 Acidiphilium cryptum JF-5 NAD-dependent DNA ligase YP_001233896.1 848631 D 349163 CDS YP_001233897.1 148259770 5160953 complement(850719..851135) 1 NC_009484.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 851135 5160953 Acry_0758 Acidiphilium cryptum JF-5 TraR/DksA family transcriptional regulator YP_001233897.1 850719 R 349163 CDS YP_001233898.1 148259771 5161687 complement(851257..851655) 1 NC_009484.1 hypothetical protein 851655 5161687 Acry_0759 Acidiphilium cryptum JF-5 hypothetical protein YP_001233898.1 851257 R 349163 CDS YP_001233899.1 148259772 5161483 851762..852916 1 NC_009484.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 852916 flgI 5161483 flgI Acidiphilium cryptum JF-5 flagellar basal body P-ring protein YP_001233899.1 851762 D 349163 CDS YP_001233900.1 148259773 5161484 852913..853326 1 NC_009484.1 hypothetical protein 853326 5161484 Acry_0761 Acidiphilium cryptum JF-5 hypothetical protein YP_001233900.1 852913 D 349163 CDS YP_001233901.1 148259774 5161351 853323..853730 1 NC_009484.1 hypothetical protein 853730 5161351 Acry_0762 Acidiphilium cryptum JF-5 hypothetical protein YP_001233901.1 853323 D 349163 CDS YP_001233902.1 148259775 5161127 853782..854795 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 854795 5161127 Acry_0763 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233902.1 853782 D 349163 CDS YP_001233903.1 148259776 5161128 complement(854832..856538) 1 NC_009484.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase 856538 5161128 Acry_0764 Acidiphilium cryptum JF-5 PAS/PAC sensor hybrid histidine kinase YP_001233903.1 854832 R 349163 CDS YP_001233904.1 148259777 5161156 complement(856755..857387) 1 NC_009484.1 hypothetical protein 857387 5161156 Acry_0765 Acidiphilium cryptum JF-5 hypothetical protein YP_001233904.1 856755 R 349163 CDS YP_001233905.1 148259778 5160375 complement(857384..859309) 1 NC_009484.1 PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; peptidase S9 prolyl oligopeptidase 859309 5160375 Acry_0766 Acidiphilium cryptum JF-5 peptidase S9 prolyl oligopeptidase YP_001233905.1 857384 R 349163 CDS YP_001233906.1 148259779 5160376 complement(859465..860256) 1 NC_009484.1 PFAM: conserved hypothetical protein 245; hypothetical protein 860256 5160376 Acry_0767 Acidiphilium cryptum JF-5 hypothetical protein YP_001233906.1 859465 R 349163 CDS YP_001233907.1 148259780 5160334 complement(860253..860852) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 860852 5160334 Acry_0768 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233907.1 860253 R 349163 CDS YP_001233908.1 148259781 5160204 complement(860857..862263) 1 NC_009484.1 PFAM: peptidase M20; peptidase dimerisation domain protein; hypothetical protein 862263 5160204 Acry_0769 Acidiphilium cryptum JF-5 hypothetical protein YP_001233908.1 860857 R 349163 CDS YP_001233909.1 148259782 5160205 complement(862329..862616) 1 NC_009484.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 862616 phhB 5160205 phhB Acidiphilium cryptum JF-5 pterin-4-alpha-carbinolamine dehydratase YP_001233909.1 862329 R 349163 CDS YP_001233910.1 148259783 5159642 complement(862613..862954) 1 NC_009484.1 hypothetical protein 862954 5159642 Acry_0771 Acidiphilium cryptum JF-5 hypothetical protein YP_001233910.1 862613 R 349163 CDS YP_001233911.1 148259784 5160136 complement(863639..864151) 1 NC_009484.1 hypothetical protein 864151 5160136 Acry_0772 Acidiphilium cryptum JF-5 hypothetical protein YP_001233911.1 863639 R 349163 CDS YP_001233912.1 148259785 5160137 complement(864167..864487) 1 NC_009484.1 hypothetical protein 864487 5160137 Acry_0773 Acidiphilium cryptum JF-5 hypothetical protein YP_001233912.1 864167 R 349163 CDS YP_001233913.1 148259786 5160628 864857..865138 1 NC_009484.1 hypothetical protein 865138 5160628 Acry_0774 Acidiphilium cryptum JF-5 hypothetical protein YP_001233913.1 864857 D 349163 CDS YP_001233914.1 148259787 5162469 865223..865681 1 NC_009484.1 hypothetical protein 865681 5162469 Acry_0775 Acidiphilium cryptum JF-5 hypothetical protein YP_001233914.1 865223 D 349163 CDS YP_001233915.1 148259788 5162470 865696..866919 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 866919 5162470 Acry_0776 Acidiphilium cryptum JF-5 transposase, mutator type YP_001233915.1 865696 D 349163 CDS YP_001233916.1 148259789 5162267 866992..867198 1 NC_009484.1 hypothetical protein 867198 5162267 Acry_0777 Acidiphilium cryptum JF-5 hypothetical protein YP_001233916.1 866992 D 349163 CDS YP_001233917.1 148259790 5159665 complement(867272..867505) 1 NC_009484.1 hypothetical protein 867505 5159665 Acry_0778 Acidiphilium cryptum JF-5 hypothetical protein YP_001233917.1 867272 R 349163 CDS YP_001233918.1 148259791 5159666 complement(867765..867989) 1 NC_009484.1 hypothetical protein 867989 5159666 Acry_0779 Acidiphilium cryptum JF-5 hypothetical protein YP_001233918.1 867765 R 349163 CDS YP_001233919.1 148259792 5159536 complement(868142..868609) 1 NC_009484.1 hypothetical protein 868609 5159536 Acry_0780 Acidiphilium cryptum JF-5 hypothetical protein YP_001233919.1 868142 R 349163 CDS YP_001233920.1 148259793 5162149 complement(868681..869697) 1 NC_009484.1 hypothetical protein 869697 5162149 Acry_0781 Acidiphilium cryptum JF-5 hypothetical protein YP_001233920.1 868681 R 349163 CDS YP_001233921.1 148259794 5162150 complement(870032..870448) 1 NC_009484.1 hypothetical protein 870448 5162150 Acry_0782 Acidiphilium cryptum JF-5 hypothetical protein YP_001233921.1 870032 R 349163 CDS YP_001233922.1 148259795 5162474 complement(870556..871014) 1 NC_009484.1 hypothetical protein 871014 5162474 Acry_0783 Acidiphilium cryptum JF-5 hypothetical protein YP_001233922.1 870556 R 349163 CDS YP_001233923.1 148259796 5160654 complement(870986..872647) 1 NC_009484.1 PFAM: transposase IS66; transposase IS66 872647 5160654 Acry_0784 Acidiphilium cryptum JF-5 transposase IS66 YP_001233923.1 870986 R 349163 CDS YP_001233924.1 148259797 5160655 complement(872721..873062) 1 NC_009484.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 873062 5160655 Acry_0785 Acidiphilium cryptum JF-5 IS66 Orf2 family protein YP_001233924.1 872721 R 349163 CDS YP_001233925.1 148259798 5159898 complement(873059..873454) 1 NC_009484.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 873454 5159898 Acry_0786 Acidiphilium cryptum JF-5 transposase IS3/IS911 family protein YP_001233925.1 873059 R 349163 CDS YP_001233926.1 148259799 5160468 complement(873540..874160) 1 NC_009484.1 hypothetical protein 874160 5160468 Acry_0787 Acidiphilium cryptum JF-5 hypothetical protein YP_001233926.1 873540 R 349163 CDS YP_001233927.1 148259800 5161575 complement(875244..876911) 1 NC_009484.1 PFAM: protein of unknown function DUF262; hypothetical protein 876911 5161575 Acry_0789 Acidiphilium cryptum JF-5 hypothetical protein YP_001233927.1 875244 R 349163 CDS YP_001233928.1 148259801 5160432 complement(877365..878573) 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 878573 5160432 Acry_0790 Acidiphilium cryptum JF-5 transposase, mutator type YP_001233928.1 877365 R 349163 CDS YP_001233929.1 148259802 5159631 878935..879207 1 NC_009484.1 PFAM: CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein 879207 5159631 Acry_0791 Acidiphilium cryptum JF-5 CopG/DNA-binding domain-containing protein YP_001233929.1 878935 D 349163 CDS YP_001233930.1 148259803 5159632 879318..881039 1 NC_009484.1 hypothetical protein 881039 5159632 Acry_0792 Acidiphilium cryptum JF-5 hypothetical protein YP_001233930.1 879318 D 349163 CDS YP_001233931.1 148259804 5160241 881039..882118 1 NC_009484.1 PFAM: BsuBIPstI restriction endonuclease domain protein; BsuBIPstI restriction endonuclease domain-containing protein 882118 5160241 Acry_0793 Acidiphilium cryptum JF-5 BsuBIPstI restriction endonuclease domain-containing protein YP_001233931.1 881039 D 349163 CDS YP_001233932.1 148259805 5160110 882149..884092 1 NC_009484.1 ATP-dependent OLD family endonuclease 884092 5160110 Acry_0794 Acidiphilium cryptum JF-5 ATP-dependent OLD family endonuclease YP_001233932.1 882149 D 349163 CDS YP_001233933.1 148259806 5162596 884089..886008 1 NC_009484.1 PFAM: UvrD/REP helicase; UvrD/REP helicase 886008 5162596 Acry_0795 Acidiphilium cryptum JF-5 UvrD/REP helicase YP_001233933.1 884089 D 349163 CDS YP_001233934.1 148259807 5162597 886039..886890 1 NC_009484.1 hypothetical protein 886890 5162597 Acry_0796 Acidiphilium cryptum JF-5 hypothetical protein YP_001233934.1 886039 D 349163 CDS YP_001233935.1 148259808 5160672 complement(886732..887985) 1 NC_009484.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 887985 5160672 Acry_0797 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001233935.1 886732 R 349163 CDS YP_001233936.1 148259809 5161063 888350..889558 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 889558 5161063 Acry_0798 Acidiphilium cryptum JF-5 transposase, mutator type YP_001233936.1 888350 D 349163 CDS YP_001233937.1 148259810 5161064 889555..889920 1 NC_009484.1 hypothetical protein 889920 5161064 Acry_0799 Acidiphilium cryptum JF-5 hypothetical protein YP_001233937.1 889555 D 349163 CDS YP_001233938.1 148259811 5162515 890039..890830 1 NC_009484.1 hypothetical protein 890830 5162515 Acry_0800 Acidiphilium cryptum JF-5 hypothetical protein YP_001233938.1 890039 D 349163 CDS YP_001233939.1 148259812 5161447 890827..891621 1 NC_009484.1 hypothetical protein 891621 5161447 Acry_0801 Acidiphilium cryptum JF-5 hypothetical protein YP_001233939.1 890827 D 349163 CDS YP_001233940.1 148259813 5161448 891606..892523 1 NC_009484.1 hypothetical protein 892523 5161448 Acry_0802 Acidiphilium cryptum JF-5 hypothetical protein YP_001233940.1 891606 D 349163 CDS YP_001233941.1 148259814 5161458 complement(892850..893035) 1 NC_009484.1 hypothetical protein 893035 5161458 Acry_0803 Acidiphilium cryptum JF-5 hypothetical protein YP_001233941.1 892850 R 349163 CDS YP_001233942.1 148259815 5161481 complement(893061..893411) 1 NC_009484.1 hypothetical protein 893411 5161481 Acry_0804 Acidiphilium cryptum JF-5 hypothetical protein YP_001233942.1 893061 R 349163 CDS YP_001233943.1 148259816 5161482 893412..894635 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 894635 5161482 Acry_0805 Acidiphilium cryptum JF-5 transposase, mutator type YP_001233943.1 893412 D 349163 CDS YP_001233944.1 148259817 5162077 complement(894639..895442) 1 NC_009484.1 hypothetical protein 895442 5162077 Acry_0806 Acidiphilium cryptum JF-5 hypothetical protein YP_001233944.1 894639 R 349163 CDS YP_001233945.1 148259818 5161974 895655..896686 1 NC_009484.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 896686 5161974 Acry_0807 Acidiphilium cryptum JF-5 transposase IS116/IS110/IS902 family protein YP_001233945.1 895655 D 349163 CDS YP_001233946.1 148259819 5161975 complement(897092..897928) 1 NC_009484.1 hypothetical protein 897928 5161975 Acry_0808 Acidiphilium cryptum JF-5 hypothetical protein YP_001233946.1 897092 R 349163 CDS YP_001233947.1 148259820 5162045 complement(897955..898227) 1 NC_009484.1 hypothetical protein 898227 5162045 Acry_0809 Acidiphilium cryptum JF-5 hypothetical protein YP_001233947.1 897955 R 349163 CDS YP_001233948.1 148259821 5162011 complement(898450..901809) 1 NC_009484.1 hypothetical protein 901809 5162011 Acry_0810 Acidiphilium cryptum JF-5 hypothetical protein YP_001233948.1 898450 R 349163 CDS YP_001233949.1 148259822 5162012 complement(901806..903236) 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 903236 5162012 Acry_0811 Acidiphilium cryptum JF-5 phage integrase family protein YP_001233949.1 901806 R 349163 CDS YP_001233950.1 148259823 5162141 complement(903410..903670) 1 NC_009484.1 hypothetical protein 903670 5162141 Acry_0812 Acidiphilium cryptum JF-5 hypothetical protein YP_001233950.1 903410 R 349163 CDS YP_001233951.1 148259824 5159527 complement(903673..904332) 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 904332 5159527 Acry_0813 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001233951.1 903673 R 349163 CDS YP_001233952.1 148259825 5159528 complement(904342..905352) 1 NC_009484.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 905352 5159528 Acry_0814 Acidiphilium cryptum JF-5 alpha/beta hydrolase domain-containing protein YP_001233952.1 904342 R 349163 CDS YP_001233953.1 148259826 5160897 905429..905668 1 NC_009484.1 hypothetical protein 905668 5160897 Acry_0815 Acidiphilium cryptum JF-5 hypothetical protein YP_001233953.1 905429 D 349163 CDS YP_001233954.1 148259827 5161694 905717..906553 1 NC_009484.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 906553 5161694 Acry_0816 Acidiphilium cryptum JF-5 dihydropteroate synthase YP_001233954.1 905717 D 349163 CDS YP_001233955.1 148259828 5161695 906629..907999 1 NC_009484.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 907999 glmM 5161695 glmM Acidiphilium cryptum JF-5 phosphoglucosamine mutase YP_001233955.1 906629 D 349163 CDS YP_001233956.1 148259829 5162361 908008..908826 1 NC_009484.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 908826 5162361 Acry_0818 Acidiphilium cryptum JF-5 phosphomethylpyrimidine kinase YP_001233956.1 908008 D 349163 CDS YP_001233957.1 148259830 5161781 908866..909288 1 NC_009484.1 PFAM: OsmC family protein; OsmC family protein 909288 5161781 Acry_0819 Acidiphilium cryptum JF-5 OsmC family protein YP_001233957.1 908866 D 349163 CDS YP_001233958.1 148259831 5161782 909425..910636 1 NC_009484.1 response regulator receiver protein 910636 5161782 Acry_0820 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001233958.1 909425 D 349163 CDS YP_001233959.1 148259832 5161624 910889..911956 1 NC_009484.1 PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-1,6-bisphosphatase 911956 5161624 Acry_0821 Acidiphilium cryptum JF-5 inositol phosphatase/fructose-1,6-bisphosphatase YP_001233959.1 910889 D 349163 CDS YP_001233960.1 148259833 5162412 911953..912828 1 NC_009484.1 PFAM: phosphoribulokinase/uridine kinase; phosphoribulokinase 912828 5162412 Acry_0822 Acidiphilium cryptum JF-5 phosphoribulokinase YP_001233960.1 911953 D 349163 CDS YP_001233961.1 148259834 5162413 912877..913956 1 NC_009484.1 TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase 913956 5162413 Acry_0823 Acidiphilium cryptum JF-5 fructose-bisphosphate aldolase YP_001233961.1 912877 D 349163 CDS YP_001233962.1 148259835 5161365 913983..915464 1 NC_009484.1 type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 915464 rbcL 5161365 rbcL Acidiphilium cryptum JF-5 ribulose bisophosphate carboxylase YP_001233962.1 913983 D 349163 CDS YP_001233963.1 148259836 5162241 915477..915905 1 NC_009484.1 PFAM: ribulose bisphosphate carboxylase, small chain; ribulose-bisphosphate carboxylase 915905 5162241 Acry_0825 Acidiphilium cryptum JF-5 ribulose-bisphosphate carboxylase YP_001233963.1 915477 D 349163 CDS YP_001233964.1 148259837 5162242 915917..916837 1 NC_009484.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; ATPase central domain-containing protein 916837 5162242 Acry_0826 Acidiphilium cryptum JF-5 ATPase central domain-containing protein YP_001233964.1 915917 D 349163 CDS YP_001233965.1 148259838 5161651 916824..917501 1 NC_009484.1 PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 917501 5161651 Acry_0827 Acidiphilium cryptum JF-5 ribulose-phosphate 3-epimerase YP_001233965.1 916824 D 349163 CDS YP_001233966.1 148259839 5161555 complement(917514..918797) 1 NC_009484.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 918797 5161555 Acry_0828 Acidiphilium cryptum JF-5 cytosine deaminase YP_001233966.1 917514 R 349163 CDS YP_001233967.1 148259840 5161556 complement(918794..919432) 1 NC_009484.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 919432 5161556 Acry_0829 Acidiphilium cryptum JF-5 pyridoxamine 5'-phosphate oxidase YP_001233967.1 918794 R 349163 CDS YP_001233968.1 148259841 5160363 919484..920320 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 920320 5160363 Acry_0830 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001233968.1 919484 D 349163 CDS YP_001233969.1 148259842 5161468 complement(920367..920609) 1 NC_009484.1 hypothetical protein 920609 5161468 Acry_0831 Acidiphilium cryptum JF-5 hypothetical protein YP_001233969.1 920367 R 349163 CDS YP_001233970.1 148259843 5161312 complement(920606..921370) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 921370 5161312 Acry_0832 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001233970.1 920606 R 349163 CDS YP_001233971.1 148259844 5161313 complement(921367..922107) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 922107 5161313 Acry_0833 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001233971.1 921367 R 349163 CDS YP_001233972.1 148259845 5161423 complement(922109..923119) 1 NC_009484.1 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein 923119 5161423 Acry_0834 Acidiphilium cryptum JF-5 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001233972.1 922109 R 349163 CDS YP_001233973.1 148259846 5161389 923192..923527 1 NC_009484.1 PFAM: protein of unknown function DUF1491; hypothetical protein 923527 5161389 Acry_0835 Acidiphilium cryptum JF-5 hypothetical protein YP_001233973.1 923192 D 349163 CDS YP_001233974.1 148259847 5161390 complement(923585..924409) 1 NC_009484.1 PFAM: formate/nitrite transporter; formate/nitrite transporter 924409 5161390 Acry_0836 Acidiphilium cryptum JF-5 formate/nitrite transporter YP_001233974.1 923585 R 349163 CDS YP_001233975.1 148259848 5161427 complement(924651..924881) 1 NC_009484.1 hypothetical protein 924881 5161427 Acry_0837 Acidiphilium cryptum JF-5 hypothetical protein YP_001233975.1 924651 R 349163 CDS YP_001233976.1 148259849 5160800 complement(924871..925698) 1 NC_009484.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD 925698 5160800 Acry_0838 Acidiphilium cryptum JF-5 formate dehydrogenase family accessory protein FdhD YP_001233976.1 924871 R 349163 CDS YP_001233977.1 148259850 5160801 complement(925695..928535) 1 NC_009484.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 928535 5160801 Acry_0839 Acidiphilium cryptum JF-5 formate dehydrogenase subunit alpha YP_001233977.1 925695 R 349163 CDS YP_001233978.1 148259851 5161388 complement(928548..930098) 1 NC_009484.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) 930098 5161388 Acry_0840 Acidiphilium cryptum JF-5 NADH dehydrogenase (quinone) YP_001233978.1 928548 R 349163 CDS YP_001233979.1 148259852 5161333 complement(930098..930571) 1 NC_009484.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone), 24 kDa subunit 930571 5161333 Acry_0841 Acidiphilium cryptum JF-5 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001233979.1 930098 R 349163 CDS YP_001233980.1 148259853 5161334 complement(930712..931611) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 931611 5161334 Acry_0842 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001233980.1 930712 R 349163 CDS YP_001233981.1 148259854 5161104 complement(931608..932681) 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 932681 5161104 Acry_0843 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001233981.1 931608 R 349163 CDS YP_001233982.1 148259855 5161262 complement(932765..934078) 1 NC_009484.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 934078 5161262 Acry_0844 Acidiphilium cryptum JF-5 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001233982.1 932765 R 349163 CDS YP_001233983.1 148259856 5161263 complement(934075..934944) 1 NC_009484.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 934944 5161263 Acry_0845 Acidiphilium cryptum JF-5 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_001233983.1 934075 R 349163 CDS YP_001233984.1 148259857 5161119 complement(934955..935488) 1 NC_009484.1 hypothetical protein 935488 5161119 Acry_0846 Acidiphilium cryptum JF-5 hypothetical protein YP_001233984.1 934955 R 349163 CDS YP_001233985.1 148259858 5161200 complement(935511..936251) 1 NC_009484.1 PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 936251 5161200 Acry_0847 Acidiphilium cryptum JF-5 peptidase C26 YP_001233985.1 935511 R 349163 CDS YP_001233986.1 148259859 5161201 complement(936273..937487) 1 NC_009484.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 937487 5161201 Acry_0848 Acidiphilium cryptum JF-5 Bcr/CflA subfamily drug resistance transporter YP_001233986.1 936273 R 349163 CDS YP_001233987.1 148259860 5160417 complement(937607..937996) 1 NC_009484.1 PFAM: protein of unknown function DUF202; hypothetical protein 937996 5160417 Acry_0849 Acidiphilium cryptum JF-5 hypothetical protein YP_001233987.1 937607 R 349163 CDS YP_001233988.1 148259861 5161055 complement(937993..938892) 1 NC_009484.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 938892 5161055 Acry_0850 Acidiphilium cryptum JF-5 branched-chain amino acid aminotransferase YP_001233988.1 937993 R 349163 CDS YP_001233989.1 148259862 5161056 939100..939618 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 939618 5161056 Acry_0851 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001233989.1 939100 D 349163 CDS YP_001233990.1 148259863 5161037 939615..940310 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 940310 5161037 Acry_0852 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001233990.1 939615 D 349163 CDS YP_001233991.1 148259864 5161047 940307..941632 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 941632 5161047 Acry_0853 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001233991.1 940307 D 349163 CDS YP_001233992.1 148259865 5161048 941866..943350 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 943350 5161048 Acry_0854 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001233992.1 941866 D 349163 CDS YP_001233993.1 148259866 5162355 complement(943307..944014) 1 NC_009484.1 PFAM: protein of unknown function DUF541; hypothetical protein 944014 5162355 Acry_0855 Acidiphilium cryptum JF-5 hypothetical protein YP_001233993.1 943307 R 349163 CDS YP_001233994.1 148259867 5160478 944300..945811 1 NC_009484.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 945811 5160478 Acry_0856 Acidiphilium cryptum JF-5 DEAD/DEAH box helicase YP_001233994.1 944300 D 349163 CDS YP_001233995.1 148259868 5160479 945808..947034 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 947034 5160479 Acry_0857 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001233995.1 945808 D 349163 CDS YP_001233996.1 148259869 5160555 complement(947091..947924) 1 NC_009484.1 hypothetical protein 947924 5160555 Acry_0858 Acidiphilium cryptum JF-5 hypothetical protein YP_001233996.1 947091 R 349163 CDS YP_001233997.1 148259870 5160361 948009..950438 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 950438 5160361 Acry_0859 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001233997.1 948009 D 349163 CDS YP_001233998.1 148259871 5160362 950490..950960 1 NC_009484.1 PFAM: GatB/Yqey domain protein; GatB/Yqey domain-containing protein 950960 5160362 Acry_0860 Acidiphilium cryptum JF-5 GatB/Yqey domain-containing protein YP_001233998.1 950490 D 349163 CDS YP_001233999.1 148259872 5160480 950957..952786 1 NC_009484.1 TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 952786 5160480 Acry_0861 Acidiphilium cryptum JF-5 DNA primase YP_001233999.1 950957 D 349163 CDS YP_001234000.1 148259873 5160402 952829..954745 1 NC_009484.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 954745 5160402 Acry_0862 Acidiphilium cryptum JF-5 RNA polymerase sigma factor RpoD YP_001234000.1 952829 D 349163 CDS YP_001234001.1 148259874 5160403 954755..955354 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 955354 5160403 Acry_0863 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001234001.1 954755 D 349163 CDS YP_001234002.1 148259875 5162287 955392..956066 1 NC_009484.1 PFAM: pseudouridine synthase; pseudouridine synthase 956066 5162287 Acry_0864 Acidiphilium cryptum JF-5 pseudouridine synthase YP_001234002.1 955392 D 349163 CDS YP_001234003.1 148259876 5160284 complement(956019..957392) 1 NC_009484.1 PFAM: glycosyl transferase, family 20; Alpha,alpha-trehalose-phosphate synthase 957392 5160284 Acry_0865 Acidiphilium cryptum JF-5 Alpha,alpha-trehalose-phosphate synthase YP_001234003.1 956019 R 349163 CDS YP_001234004.1 148259877 5160285 complement(957395..958105) 1 NC_009484.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 958105 5160285 Acry_0866 Acidiphilium cryptum JF-5 HAD family hydrolase YP_001234004.1 957395 R 349163 CDS YP_001234005.1 148259878 5159679 complement(958169..959686) 1 NC_009484.1 PFAM: glycosyl transferase, family 39; glycosyl transferase family protein 959686 5159679 Acry_0867 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234005.1 958169 R 349163 CDS YP_001234006.1 148259879 5159657 960451..960885 1 NC_009484.1 PFAM: protein of unknown function DUF461; hypothetical protein 960885 5159657 Acry_0868 Acidiphilium cryptum JF-5 hypothetical protein YP_001234006.1 960451 D 349163 CDS YP_001234007.1 148259880 5159616 complement(961321..962010) 1 NC_009484.1 PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 962010 5159616 Acry_0869 Acidiphilium cryptum JF-5 electron transport protein SCO1/SenC YP_001234007.1 961321 R 349163 CDS YP_001234008.1 148259881 5159617 complement(962007..963470) 1 NC_009484.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 963470 gatB 5159617 gatB Acidiphilium cryptum JF-5 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001234008.1 962007 R 349163 CDS YP_001234009.1 148259882 5159664 complement(963467..964948) 1 NC_009484.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 964948 gatA 5159664 gatA Acidiphilium cryptum JF-5 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001234009.1 963467 R 349163 CDS YP_001234010.1 148259883 5159914 complement(964945..965232) 1 NC_009484.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 965232 5159914 Acry_0872 Acidiphilium cryptum JF-5 glutamyl-tRNA(Gln) amidotransferase subunit C YP_001234010.1 964945 R 349163 CDS YP_001234011.1 148259884 5159915 965279..965755 1 NC_009484.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; Holliday junction resolvase YqgF 965755 5159915 Acry_0873 Acidiphilium cryptum JF-5 Holliday junction resolvase YqgF YP_001234011.1 965279 D 349163 CDS YP_001234012.1 148259885 5159623 965950..966864 1 NC_009484.1 hypothetical protein 966864 5159623 Acry_0874 Acidiphilium cryptum JF-5 hypothetical protein YP_001234012.1 965950 D 349163 CDS YP_001234013.1 148259886 5159489 966965..967501 1 NC_009484.1 PFAM: glycoside hydrolase, family 24; glycoside hydrolase family protein 967501 5159489 Acry_0875 Acidiphilium cryptum JF-5 glycoside hydrolase family protein YP_001234013.1 966965 D 349163 CDS YP_001234014.1 148259887 5159490 967693..968277 1 NC_009484.1 hypothetical protein 968277 5159490 Acry_0876 Acidiphilium cryptum JF-5 hypothetical protein YP_001234014.1 967693 D 349163 CDS YP_001234015.1 148259888 5160210 968938..969480 1 NC_009484.1 hypothetical protein 969480 5160210 Acry_0877 Acidiphilium cryptum JF-5 hypothetical protein YP_001234015.1 968938 D 349163 CDS YP_001234016.1 148259889 5159950 970200..970466 1 NC_009484.1 hypothetical protein 970466 5159950 Acry_0878 Acidiphilium cryptum JF-5 hypothetical protein YP_001234016.1 970200 D 349163 CDS YP_001234017.1 148259890 5159951 970564..971007 1 NC_009484.1 hypothetical protein 971007 5159951 Acry_0879 Acidiphilium cryptum JF-5 hypothetical protein YP_001234017.1 970564 D 349163 CDS YP_001234018.1 148259891 5160193 971120..971896 1 NC_009484.1 hypothetical protein 971896 5160193 Acry_0880 Acidiphilium cryptum JF-5 hypothetical protein YP_001234018.1 971120 D 349163 CDS YP_001234019.1 148259892 5160077 complement(971897..973954) 1 NC_009484.1 PFAM: phosphoesterase; phosphoesterase 973954 5160077 Acry_0881 Acidiphilium cryptum JF-5 phosphoesterase YP_001234019.1 971897 R 349163 CDS YP_001234020.1 148259893 5160078 complement(974045..974443) 1 NC_009484.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 974443 5160078 Acry_0882 Acidiphilium cryptum JF-5 lytic transglycosylase YP_001234020.1 974045 R 349163 CDS YP_001234021.1 148259894 5159446 974524..974961 1 NC_009484.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 974961 5159446 Acry_0883 Acidiphilium cryptum JF-5 general secretion pathway protein G YP_001234021.1 974524 D 349163 CDS YP_001234022.1 148259895 5159912 complement(974969..975766) 1 NC_009484.1 hypothetical protein 975766 5159912 Acry_0884 Acidiphilium cryptum JF-5 hypothetical protein YP_001234022.1 974969 R 349163 CDS YP_001234023.1 148259896 5159913 complement(975769..978039) 1 NC_009484.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 978039 5159913 Acry_0885 Acidiphilium cryptum JF-5 general secretion pathway protein D YP_001234023.1 975769 R 349163 CDS YP_001234024.1 148259897 5160070 complement(978063..978413) 1 NC_009484.1 hypothetical protein 978413 5160070 Acry_0886 Acidiphilium cryptum JF-5 hypothetical protein YP_001234024.1 978063 R 349163 CDS YP_001234025.1 148259898 5162418 complement(978569..979150) 1 NC_009484.1 hypothetical protein 979150 5162418 Acry_0887 Acidiphilium cryptum JF-5 hypothetical protein YP_001234025.1 978569 R 349163 CDS YP_001234026.1 148259899 5162419 complement(979155..980207) 1 NC_009484.1 PFAM: Fimbrial assembly family protein; fimbrial assembly family protein 980207 5162419 Acry_0888 Acidiphilium cryptum JF-5 fimbrial assembly family protein YP_001234026.1 979155 R 349163 CDS YP_001234027.1 148259900 5162489 complement(980257..980853) 1 NC_009484.1 hypothetical protein 980853 5162489 Acry_0889 Acidiphilium cryptum JF-5 hypothetical protein YP_001234027.1 980257 R 349163 CDS YP_001234028.1 148259901 5159533 complement(980850..981218) 1 NC_009484.1 hypothetical protein 981218 5159533 Acry_0890 Acidiphilium cryptum JF-5 hypothetical protein YP_001234028.1 980850 R 349163 CDS YP_001234029.1 148259902 5159534 complement(981202..981669) 1 NC_009484.1 hypothetical protein 981669 5159534 Acry_0891 Acidiphilium cryptum JF-5 hypothetical protein YP_001234029.1 981202 R 349163 CDS YP_001234030.1 148259903 5159865 complement(981653..982873) 1 NC_009484.1 PFAM: type II secretion system protein; type II secretion system protein 982873 5159865 Acry_0892 Acidiphilium cryptum JF-5 type II secretion system protein YP_001234030.1 981653 R 349163 CDS YP_001234031.1 148259904 5159841 complement(982886..984559) 1 NC_009484.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; type II secretion system protein E 984559 5159841 Acry_0893 Acidiphilium cryptum JF-5 type II secretion system protein E YP_001234031.1 982886 R 349163 CDS YP_001234032.1 148259905 5159842 984629..985387 1 NC_009484.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; peptidase A24A domain-containing protein 985387 5159842 Acry_0894 Acidiphilium cryptum JF-5 peptidase A24A domain-containing protein YP_001234032.1 984629 D 349163 CDS YP_001234033.1 148259906 5162479 985507..988347 1 NC_009484.1 hypothetical protein 988347 5162479 Acry_0895 Acidiphilium cryptum JF-5 hypothetical protein YP_001234033.1 985507 D 349163 CDS YP_001234034.1 148259907 5162490 complement(988630..990957) 1 NC_009484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 990957 5162490 Acry_0896 Acidiphilium cryptum JF-5 TonB-dependent receptor YP_001234034.1 988630 R 349163 CDS YP_001234035.1 148259908 5162491 complement(991181..991402) 1 NC_009484.1 hypothetical protein 991402 5162491 Acry_0897 Acidiphilium cryptum JF-5 hypothetical protein YP_001234035.1 991181 R 349163 CDS YP_001234036.1 148259909 5162225 complement(991399..991977) 1 NC_009484.1 hypothetical protein 991977 5162225 Acry_0898 Acidiphilium cryptum JF-5 hypothetical protein YP_001234036.1 991399 R 349163 CDS YP_001234037.1 148259910 5162547 complement(992345..993907) 1 NC_009484.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 993907 guaA 5162547 guaA Acidiphilium cryptum JF-5 GMP synthase YP_001234037.1 992345 R 349163 CDS YP_001234038.1 148259911 5162548 complement(993980..994645) 1 NC_009484.1 PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 994645 5162548 Acry_0900 Acidiphilium cryptum JF-5 carboxymethylenebutenolidase YP_001234038.1 993980 R 349163 CDS YP_001234039.1 148259912 5162522 complement(994648..995142) 1 NC_009484.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 995142 5162522 Acry_0901 Acidiphilium cryptum JF-5 dinucleoside polyphosphate hydrolase YP_001234039.1 994648 R 349163 CDS YP_001234040.1 148259913 5162191 complement(995139..996122) 1 NC_009484.1 PFAM: protein of unknown function DUF610, YibQ; hypothetical protein 996122 5162191 Acry_0902 Acidiphilium cryptum JF-5 hypothetical protein YP_001234040.1 995139 R 349163 CDS YP_001234041.1 148259914 5162192 complement(996109..997482) 1 NC_009484.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 997482 5162192 Acry_0903 Acidiphilium cryptum JF-5 carboxyl-terminal protease YP_001234041.1 996109 R 349163 CDS YP_001234042.1 148259915 5162279 complement(997555..998733) 1 NC_009484.1 PFAM: peptidase M23B; peptidase M23B 998733 5162279 Acry_0904 Acidiphilium cryptum JF-5 peptidase M23B YP_001234042.1 997555 R 349163 CDS YP_001234043.1 148259916 5162091 complement(998733..1000250) 1 NC_009484.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1000250 5162091 Acry_0905 Acidiphilium cryptum JF-5 phosphoglyceromutase YP_001234043.1 998733 R 349163 CDS YP_001234044.1 148259917 5162393 1000347..1001120 1 NC_009484.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 1001120 5162393 Acry_0906 Acidiphilium cryptum JF-5 TatD family hydrolase YP_001234044.1 1000347 D 349163 CDS YP_001234045.1 148259918 5162394 1001117..1001920 1 NC_009484.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1001920 5162394 Acry_0907 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001234045.1 1001117 D 349163 CDS YP_001234046.1 148259919 5162546 1001917..1003122 1 NC_009484.1 PFAM: peptidase M29, aminopeptidase II; peptidase M29, aminopeptidase II 1003122 5162546 Acry_0908 Acidiphilium cryptum JF-5 peptidase M29, aminopeptidase II YP_001234046.1 1001917 D 349163 CDS YP_001234047.1 148259920 5162273 complement(1003139..1004335) 1 NC_009484.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 1004335 5162273 Acry_0909 Acidiphilium cryptum JF-5 threonine dehydratase YP_001234047.1 1003139 R 349163 CDS YP_001234048.1 148259921 5162274 complement(1004340..1004813) 1 NC_009484.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1004813 greA 5162274 greA Acidiphilium cryptum JF-5 transcription elongation factor GreA YP_001234048.1 1004340 R 349163 CDS YP_001234049.1 148259922 5162587 complement(1004895..1008140) 1 NC_009484.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1008140 carB 5162587 carB Acidiphilium cryptum JF-5 carbamoyl phosphate synthase large subunit YP_001234049.1 1004895 R 349163 CDS YP_001234050.1 148259923 5162184 complement(1008143..1009486) 1 NC_009484.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1009486 5162184 Acry_0912 Acidiphilium cryptum JF-5 carbamoyl phosphate synthase small subunit YP_001234050.1 1008143 R 349163 CDS YP_001234051.1 148259924 5162185 1009622..1012270 1 NC_009484.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1012270 5162185 Acry_0913 Acidiphilium cryptum JF-5 DNA mismatch repair protein MutS YP_001234051.1 1009622 D 349163 CDS YP_001234052.1 148259925 5162092 1012272..1015088 1 NC_009484.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1015088 5162092 Acry_0914 Acidiphilium cryptum JF-5 PII uridylyl-transferase YP_001234052.1 1012272 D 349163 CDS YP_001234053.1 148259926 5162535 1015253..1017229 1 NC_009484.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: lipolytic enzyme, G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 1017229 5162535 Acry_0915 Acidiphilium cryptum JF-5 outer membrane autotransporter YP_001234053.1 1015253 D 349163 CDS YP_001234054.1 148259927 5161576 1017496..1018818 1 NC_009484.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1018818 tig 5161576 tig Acidiphilium cryptum JF-5 trigger factor YP_001234054.1 1017496 D 349163 CDS YP_001234055.1 148259928 5162456 1018970..1019605 1 NC_009484.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1019605 clpP 5162456 clpP Acidiphilium cryptum JF-5 ATP-dependent Clp protease proteolytic subunit YP_001234055.1 1018970 D 349163 CDS YP_001234056.1 148259929 5160394 1019750..1021006 1 NC_009484.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1021006 clpX 5160394 clpX Acidiphilium cryptum JF-5 ATP-dependent protease ATP-binding subunit ClpX YP_001234056.1 1019750 D 349163 CDS YP_001234057.1 148259930 5160395 1021142..1023583 1 NC_009484.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1023583 5160395 Acry_0919 Acidiphilium cryptum JF-5 ATP-dependent protease La YP_001234057.1 1021142 D 349163 CDS YP_001234058.1 148259931 5159798 1023777..1024040 1 NC_009484.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1024040 5159798 Acry_0920 Acidiphilium cryptum JF-5 histone family protein DNA-binding protein YP_001234058.1 1023777 D 349163 CDS YP_001234059.1 148259932 5161657 1024776..1025141 1 NC_009484.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1025141 5161657 Acry_0921 Acidiphilium cryptum JF-5 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_001234059.1 1024776 D 349163 CDS YP_001234060.1 148259933 5160633 1025217..1025777 1 NC_009484.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1025777 5160633 Acry_0922 Acidiphilium cryptum JF-5 NADH dehydrogenase subunit B YP_001234060.1 1025217 D 349163 CDS YP_001234061.1 148259934 5160595 1025770..1026411 1 NC_009484.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1026411 5160595 Acry_0923 Acidiphilium cryptum JF-5 NADH (or F420H2) dehydrogenase subunit C YP_001234061.1 1025770 D 349163 CDS YP_001234062.1 148259935 5161790 1026408..1027628 1 NC_009484.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1027628 5161790 Acry_0924 Acidiphilium cryptum JF-5 NADH dehydrogenase subunit D YP_001234062.1 1026408 D 349163 CDS YP_001234063.1 148259936 5161791 1027632..1028243 1 NC_009484.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1028243 5161791 Acry_0925 Acidiphilium cryptum JF-5 NADH-quinone oxidoreductase subunit E YP_001234063.1 1027632 D 349163 CDS YP_001234064.1 148259937 5162015 1028245..1029540 1 NC_009484.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1029540 5162015 Acry_0926 Acidiphilium cryptum JF-5 NADH dehydrogenase I subunit F YP_001234064.1 1028245 D 349163 CDS YP_001234065.1 148259938 5162176 1029608..1031668 1 NC_009484.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1031668 5162176 Acry_0927 Acidiphilium cryptum JF-5 NADH dehydrogenase subunit G YP_001234065.1 1029608 D 349163 CDS YP_001234066.1 148259939 5162177 1031674..1032690 1 NC_009484.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 1032690 5162177 Acry_0928 Acidiphilium cryptum JF-5 NADH dehydrogenase (quinone) YP_001234066.1 1031674 D 349163 CDS YP_001234067.1 148259940 5162190 1032703..1033194 1 NC_009484.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1033194 5162190 Acry_0929 Acidiphilium cryptum JF-5 NADH dehydrogenase subunit I YP_001234067.1 1032703 D 349163 CDS YP_001234068.1 148259941 5162305 1033201..1033851 1 NC_009484.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1033851 5162305 Acry_0930 Acidiphilium cryptum JF-5 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_001234068.1 1033201 D 349163 CDS YP_001234069.1 148259942 5162306 1033848..1034159 1 NC_009484.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1034159 5162306 Acry_0931 Acidiphilium cryptum JF-5 NADH-ubiquinone oxidoreductase subunit 4L YP_001234069.1 1033848 D 349163 CDS YP_001234070.1 148259943 5161349 1034166..1036094 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1036094 5161349 Acry_0932 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit L YP_001234070.1 1034166 D 349163 CDS YP_001234071.1 148259944 5161643 1036108..1037625 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1037625 5161643 Acry_0933 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit M YP_001234071.1 1036108 D 349163 CDS YP_001234072.1 148259945 5161644 1037634..1039070 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1039070 5161644 Acry_0934 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit N YP_001234072.1 1037634 D 349163 CDS YP_001234073.1 148259946 5159992 1039067..1039795 1 NC_009484.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin--acetyl-CoA-carboxylase ligase 1039795 5159992 Acry_0935 Acidiphilium cryptum JF-5 biotin--acetyl-CoA-carboxylase ligase YP_001234073.1 1039067 D 349163 CDS YP_001234074.1 148259947 5160807 1039817..1040617 1 NC_009484.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1040617 5160807 Acry_0936 Acidiphilium cryptum JF-5 pantothenate kinase YP_001234074.1 1039817 D 349163 CDS YP_001234075.1 148259948 5160808 1040652..1042298 1 NC_009484.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 1042298 5160808 Acry_0937 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001234075.1 1040652 D 349163 CDS YP_001234076.1 148259949 5162381 1042550..1043644 1 NC_009484.1 PFAM: acyltransferase 3; acyltransferase 3 1043644 5162381 Acry_0938 Acidiphilium cryptum JF-5 acyltransferase 3 YP_001234076.1 1042550 D 349163 CDS YP_001234077.1 148259950 5161110 1043678..1044991 1 NC_009484.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1044991 5161110 Acry_0939 Acidiphilium cryptum JF-5 prolyl-tRNA synthetase YP_001234077.1 1043678 D 349163 CDS YP_001234078.1 148259951 5161111 1044991..1046238 1 NC_009484.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 1046238 5161111 Acry_0940 Acidiphilium cryptum JF-5 LolC/E family lipoprotein releasing system, transmembrane protein YP_001234078.1 1044991 D 349163 CDS YP_001234079.1 148259952 5161145 1046231..1046908 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1046908 5161145 Acry_0941 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234079.1 1046231 D 349163 CDS YP_001234080.1 148259953 5161146 1046931..1047869 1 NC_009484.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 1047869 5161146 Acry_0942 Acidiphilium cryptum JF-5 alpha/beta hydrolase domain-containing protein YP_001234080.1 1046931 D 349163 CDS YP_001234081.1 148259954 5161071 1047859..1048329 1 NC_009484.1 hypothetical protein 1048329 5161071 Acry_0943 Acidiphilium cryptum JF-5 hypothetical protein YP_001234081.1 1047859 D 349163 CDS YP_001234082.1 148259955 5161072 complement(1048289..1050094) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1050094 5161072 Acry_0944 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234082.1 1048289 R 349163 CDS YP_001234083.1 148259956 5159689 1050162..1051766 1 NC_009484.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD dependent oxidoreductase 1051766 5159689 Acry_0945 Acidiphilium cryptum JF-5 FAD dependent oxidoreductase YP_001234083.1 1050162 D 349163 CDS YP_001234084.1 148259957 5159978 complement(1051867..1052637) 1 NC_009484.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 1052637 5159978 Acry_0946 Acidiphilium cryptum JF-5 exodeoxyribonuclease III Xth YP_001234084.1 1051867 R 349163 CDS YP_001234085.1 148259958 5161603 1053066..1054208 1 NC_009484.1 TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; putative deoxyguanosinetriphosphate triphosphohydrolase 1054208 5161603 Acry_0948 Acidiphilium cryptum JF-5 putative deoxyguanosinetriphosphate triphosphohydrolase YP_001234085.1 1053066 D 349163 CDS YP_001234086.1 148259959 5160172 1054218..1056008 1 NC_009484.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1056008 argS 5160172 argS Acidiphilium cryptum JF-5 arginyl-tRNA synthetase YP_001234086.1 1054218 D 349163 CDS YP_001234087.1 148259960 5160164 1056034..1056912 1 NC_009484.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 1056912 5160164 Acry_0950 Acidiphilium cryptum JF-5 sporulation domain-containing protein YP_001234087.1 1056034 D 349163 CDS YP_001234088.1 148259961 5160165 1056923..1057849 1 NC_009484.1 PFAM: glycoside hydrolase, family 3 domain protein; beta-N-acetylhexosaminidase 1057849 5160165 Acry_0951 Acidiphilium cryptum JF-5 beta-N-acetylhexosaminidase YP_001234088.1 1056923 D 349163 CDS YP_001234089.1 148259962 5159878 1057846..1058541 1 NC_009484.1 PFAM: peptidase M50; peptidase M50 1058541 5159878 Acry_0952 Acidiphilium cryptum JF-5 peptidase M50 YP_001234089.1 1057846 D 349163 CDS YP_001234090.1 148259963 5159586 1058528..1059322 1 NC_009484.1 PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1059322 5159586 Acry_0953 Acidiphilium cryptum JF-5 chromosome segregation and condensation protein ScpA YP_001234090.1 1058528 D 349163 CDS YP_001234091.1 148259964 5159587 1059315..1059872 1 NC_009484.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; putative transcriptional regulator 1059872 5159587 Acry_0954 Acidiphilium cryptum JF-5 putative transcriptional regulator YP_001234091.1 1059315 D 349163 CDS YP_001234092.1 148259965 5159643 1059960..1060364 1 NC_009484.1 hypothetical protein 1060364 5159643 Acry_0955 Acidiphilium cryptum JF-5 hypothetical protein YP_001234092.1 1059960 D 349163 CDS YP_001234093.1 148259966 5161949 1060374..1061180 1 NC_009484.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1061180 5161949 Acry_0956 Acidiphilium cryptum JF-5 Sec-independent protein translocase subunit TatC YP_001234093.1 1060374 D 349163 CDS YP_001234094.1 148259967 5161950 1061173..1062474 1 NC_009484.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1062474 5161950 Acry_0957 Acidiphilium cryptum JF-5 seryl-tRNA synthetase YP_001234094.1 1061173 D 349163 CDS YP_001234095.1 148259968 5160827 1062557..1063426 1 NC_009484.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1063426 5160827 Acry_0958 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001234095.1 1062557 D 349163 CDS YP_001234096.1 148259969 5160343 1063445..1063882 1 NC_009484.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1063882 5160343 Acry_0959 Acidiphilium cryptum JF-5 hypothetical protein YP_001234096.1 1063445 D 349163 CDS YP_001234097.1 148259970 5160344 1063882..1064346 1 NC_009484.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1064346 5160344 Acry_0960 Acidiphilium cryptum JF-5 hypothetical protein YP_001234097.1 1063882 D 349163 CDS YP_001234098.1 148259971 5160207 complement(1064295..1064702) 1 NC_009484.1 PFAM: regulatory protein, ArsR; regulatory protein ArsR 1064702 5160207 Acry_0961 Acidiphilium cryptum JF-5 regulatory protein ArsR YP_001234098.1 1064295 R 349163 CDS YP_001234099.1 148259972 5159673 complement(1064853..1065620) 1 NC_009484.1 PFAM: thiazole biosynthesis family protein; thiazole biosynthesis family protein 1065620 5159673 Acry_0962 Acidiphilium cryptum JF-5 thiazole biosynthesis family protein YP_001234099.1 1064853 R 349163 CDS YP_001234100.1 148259973 5159674 complement(1065622..1065828) 1 NC_009484.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 1065828 5159674 Acry_0963 Acidiphilium cryptum JF-5 thiamine biosynthesis protein ThiS YP_001234100.1 1065622 R 349163 CDS YP_001234101.1 148259974 5160010 complement(1065825..1066946) 1 NC_009484.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase ThiO 1066946 5160010 Acry_0964 Acidiphilium cryptum JF-5 glycine oxidase ThiO YP_001234101.1 1065825 R 349163 CDS YP_001234102.1 148259975 5161967 complement(1066951..1068771) 1 NC_009484.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1068771 5161967 Acry_0965 Acidiphilium cryptum JF-5 thiamine biosynthesis protein ThiC YP_001234102.1 1066951 R 349163 CDS YP_001234103.1 148259976 5161968 1069191..1071074 1 NC_009484.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1071074 5161968 Acry_0966 Acidiphilium cryptum JF-5 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001234103.1 1069191 D 349163 CDS YP_001234104.1 148259977 5161940 1071149..1071811 1 NC_009484.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 1071811 5161940 Acry_0967 Acidiphilium cryptum JF-5 DSBA oxidoreductase YP_001234104.1 1071149 D 349163 CDS YP_001234105.1 148259978 5162079 1071854..1072813 1 NC_009484.1 TIGRFAM: lytic murein transglycosylase; lytic murein transglycosylase 1072813 5162079 Acry_0968 Acidiphilium cryptum JF-5 lytic murein transglycosylase YP_001234105.1 1071854 D 349163 CDS YP_001234106.1 148259979 5162080 1072810..1073697 1 NC_009484.1 PFAM: Rare lipoprotein A; Sporulation domain protein; rare lipoprotein A 1073697 5162080 Acry_0969 Acidiphilium cryptum JF-5 rare lipoprotein A YP_001234106.1 1072810 D 349163 CDS YP_001234107.1 148259980 5161958 1073694..1074326 1 NC_009484.1 PFAM: thymidylate kinase; dTMP kinase 1074326 5161958 Acry_0970 Acidiphilium cryptum JF-5 dTMP kinase YP_001234107.1 1073694 D 349163 CDS YP_001234108.1 148259981 5161959 1074326..1075294 1 NC_009484.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1075294 5161959 Acry_0971 Acidiphilium cryptum JF-5 DNA polymerase III subunit delta' YP_001234108.1 1074326 D 349163 CDS YP_001234109.1 148259982 5161960 1075291..1076826 1 NC_009484.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: methionyl-tRNA synthetase, class Ia; methionyl-tRNA synthetase 1076826 5161960 Acry_0972 Acidiphilium cryptum JF-5 methionyl-tRNA synthetase YP_001234109.1 1075291 D 349163 CDS YP_001234110.1 148259983 5162046 complement(1076896..1077909) 1 NC_009484.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM 1077909 fliM 5162046 fliM Acidiphilium cryptum JF-5 flagellar motor switch protein FliM YP_001234110.1 1076896 R 349163 CDS YP_001234111.1 148259984 5162013 1078066..1079571 1 NC_009484.1 hypothetical protein 1079571 5162013 Acry_0974 Acidiphilium cryptum JF-5 hypothetical protein YP_001234111.1 1078066 D 349163 CDS YP_001234112.1 148259985 5162014 complement(1079578..1080210) 1 NC_009484.1 hypothetical protein 1080210 5162014 Acry_0975 Acidiphilium cryptum JF-5 hypothetical protein YP_001234112.1 1079578 R 349163 CDS YP_001234113.1 148259986 5162139 complement(1080207..1080983) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1080983 5162139 Acry_0976 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234113.1 1080207 R 349163 CDS YP_001234114.1 148259987 5162142 complement(1081211..1082305) 1 NC_009484.1 PFAM: Collagen triple helix repeat; triple helix repeat-containing collagen 1082305 5162142 Acry_0977 Acidiphilium cryptum JF-5 triple helix repeat-containing collagen YP_001234114.1 1081211 R 349163 CDS YP_001234115.1 148259988 5162143 1082634..1083566 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; transcriptional regulator PadR family protein; MarR family transcriptional regulator 1083566 5162143 Acry_0978 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001234115.1 1082634 D 349163 CDS YP_001234116.1 148259989 5162170 complement(1083578..1084426) 1 NC_009484.1 PFAM: metallophosphoesterase; metallophosphoesterase 1084426 5162170 Acry_0979 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001234116.1 1083578 R 349163 CDS YP_001234117.1 148259990 5161529 complement(1084420..1085208) 1 NC_009484.1 PFAM: inositol monophosphatase; inositol monophosphatase 1085208 5161529 Acry_0980 Acidiphilium cryptum JF-5 inositol monophosphatase YP_001234117.1 1084420 R 349163 CDS YP_001234118.1 148259991 5161779 complement(1085205..1086266) 1 NC_009484.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1086266 5161779 Acry_0981 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234118.1 1085205 R 349163 CDS YP_001234119.1 148259992 5161635 complement(1087045..1087911) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1087911 5161635 Acry_0983 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001234119.1 1087045 R 349163 CDS YP_001234120.1 148259993 5159596 complement(1087908..1089008) 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1089008 5159596 Acry_0984 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001234120.1 1087908 R 349163 CDS YP_001234121.1 148259994 5161846 complement(1089166..1090362) 1 NC_009484.1 hypothetical protein 1090362 5161846 Acry_0985 Acidiphilium cryptum JF-5 hypothetical protein YP_001234121.1 1089166 R 349163 CDS YP_001234122.1 148259995 5161847 1090442..1091317 1 NC_009484.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 1091317 5161847 Acry_0986 Acidiphilium cryptum JF-5 small multidrug resistance protein YP_001234122.1 1090442 D 349163 CDS YP_001234123.1 148259996 5161763 1091492..1092436 1 NC_009484.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 1092436 5161763 Acry_0987 Acidiphilium cryptum JF-5 glycine betaine ABC transporter substrate-binding protein YP_001234123.1 1091492 D 349163 CDS YP_001234124.1 148259997 5161873 1092499..1093359 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1093359 5161873 Acry_0988 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001234124.1 1092499 D 349163 CDS YP_001234125.1 148259998 5161874 1093356..1094609 1 NC_009484.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1094609 5161874 Acry_0989 Acidiphilium cryptum JF-5 glycine betaine/L-proline ABC transporter ATPase YP_001234125.1 1093356 D 349163 CDS YP_001234126.1 148259999 5162290 1094624..1096087 1 NC_009484.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1096087 5162290 Acry_0990 Acidiphilium cryptum JF-5 betaine aldehyde dehydrogenase YP_001234126.1 1094624 D 349163 CDS YP_001234127.1 148260000 5161606 1096102..1097760 1 NC_009484.1 TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 1097760 5161606 Acry_0991 Acidiphilium cryptum JF-5 choline dehydrogenase YP_001234127.1 1096102 D 349163 CDS YP_001234128.1 148260001 5161607 1097884..1099137 1 NC_009484.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta 1099137 5161607 Acry_0992 Acidiphilium cryptum JF-5 sarcosine oxidase subunit beta YP_001234128.1 1097884 D 349163 CDS YP_001234129.1 148260002 5161796 1099149..1099403 1 NC_009484.1 PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 1099403 5161796 Acry_0993 Acidiphilium cryptum JF-5 sarcosine oxidase subunit delta YP_001234129.1 1099149 D 349163 CDS YP_001234130.1 148260003 5161707 1099400..1102396 1 NC_009484.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glucose-inhibited division protein A; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; sarcosine oxidase subunit alpha 1102396 5161707 Acry_0994 Acidiphilium cryptum JF-5 sarcosine oxidase subunit alpha YP_001234130.1 1099400 D 349163 CDS YP_001234131.1 148260004 5161708 1102389..1102949 1 NC_009484.1 PFAM: Sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 1102949 5161708 Acry_0995 Acidiphilium cryptum JF-5 sarcosine oxidase subunit gamma YP_001234131.1 1102389 D 349163 CDS YP_001234132.1 148260005 5161583 1103025..1104395 1 NC_009484.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1104395 5161583 Acry_0996 Acidiphilium cryptum JF-5 L-serine dehydratase 1 YP_001234132.1 1103025 D 349163 CDS YP_001234133.1 148260006 5161479 complement(1104540..1105310) 1 NC_009484.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 1105310 5161479 Acry_0997 Acidiphilium cryptum JF-5 electron transfer flavoprotein subunit beta YP_001234133.1 1104540 R 349163 CDS YP_001234134.1 148260007 5161480 complement(1105307..1106383) 1 NC_009484.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1106383 5161480 Acry_0998 Acidiphilium cryptum JF-5 electron transfer flavoprotein subunit alpha YP_001234134.1 1105307 R 349163 CDS YP_001234135.1 148260008 5159881 complement(1106380..1108227) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 1108227 5159881 Acry_0999 Acidiphilium cryptum JF-5 hypothetical protein YP_001234135.1 1106380 R 349163 CDS YP_001234136.1 148260009 5159559 complement(1108227..1110263) 1 NC_009484.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; UDP-glucose/GDP-mannose dehydrogenase; NADH:flavin oxidoreductase 1110263 5159559 Acry_1000 Acidiphilium cryptum JF-5 NADH:flavin oxidoreductase YP_001234136.1 1108227 R 349163 CDS YP_001234137.1 148260010 5159560 complement(1110260..1111234) 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 1111234 5159560 Acry_1001 Acidiphilium cryptum JF-5 AraC family transcriptional regulator YP_001234137.1 1110260 R 349163 CDS YP_001234138.1 148260011 5159743 complement(1111234..1112325) 1 NC_009484.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1112325 5159743 Acry_1002 Acidiphilium cryptum JF-5 oxidoreductase FAD-binding subunit YP_001234138.1 1111234 R 349163 CDS YP_001234139.1 148260012 5161187 complement(1112322..1113593) 1 NC_009484.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 1113593 5161187 Acry_1003 Acidiphilium cryptum JF-5 Rieske (2Fe-2S) domain-containing protein YP_001234139.1 1112322 R 349163 CDS YP_001234140.1 148260013 5161188 complement(1113737..1114792) 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 1114792 5161188 Acry_1004 Acidiphilium cryptum JF-5 AraC family transcriptional regulator YP_001234140.1 1113737 R 349163 CDS YP_001234141.1 148260014 5161070 complement(1114913..1116469) 1 NC_009484.1 PFAM: sulfatase; sulfatase 1116469 5161070 Acry_1005 Acidiphilium cryptum JF-5 sulfatase YP_001234141.1 1114913 R 349163 CDS YP_001234142.1 148260015 5161192 1116554..1117507 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1117507 5161192 Acry_1006 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234142.1 1116554 D 349163 CDS YP_001234143.1 148260016 5161193 complement(1117476..1118225) 1 NC_009484.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 1118225 5161193 Acry_1007 Acidiphilium cryptum JF-5 ubiquinone biosynthesis O-methyltransferase YP_001234143.1 1117476 R 349163 CDS YP_001234144.1 148260017 5161118 1118323..1119540 1 NC_009484.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1119540 5161118 Acry_1008 Acidiphilium cryptum JF-5 aspartate kinase YP_001234144.1 1118323 D 349163 CDS YP_001234145.1 148260018 5161084 1119537..1120574 1 NC_009484.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1120574 5161084 Acry_1009 Acidiphilium cryptum JF-5 2-nitropropane dioxygenase YP_001234145.1 1119537 D 349163 CDS YP_001234146.1 148260019 5161085 1120552..1122819 1 NC_009484.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase PtsP 1122819 5161085 Acry_1010 Acidiphilium cryptum JF-5 phosphoenolpyruvate-protein phosphotransferase PtsP YP_001234146.1 1120552 D 349163 CDS YP_001234147.1 148260020 5161008 1122940..1124250 1 NC_009484.1 hypothetical protein 1124250 5161008 Acry_1011 Acidiphilium cryptum JF-5 hypothetical protein YP_001234147.1 1122940 D 349163 CDS YP_001234148.1 148260021 5161022 1124273..1125397 1 NC_009484.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1125397 ispG 5161022 ispG Acidiphilium cryptum JF-5 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001234148.1 1124273 D 349163 CDS YP_001234149.1 148260022 5161023 1125481..1126716 1 NC_009484.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1126716 hisS 5161023 hisS Acidiphilium cryptum JF-5 histidyl-tRNA synthetase YP_001234149.1 1125481 D 349163 CDS YP_001234150.1 148260023 5160850 1126729..1127787 1 NC_009484.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1127787 prfA 5160850 prfA Acidiphilium cryptum JF-5 peptide chain release factor 1 YP_001234150.1 1126729 D 349163 CDS YP_001234151.1 148260024 5160909 1127784..1128626 1 NC_009484.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; HemK family modification methylase 1128626 5160909 Acry_1015 Acidiphilium cryptum JF-5 HemK family modification methylase YP_001234151.1 1127784 D 349163 CDS YP_001234152.1 148260025 5160910 1128867..1129298 1 NC_009484.1 hypothetical protein 1129298 5160910 Acry_1016 Acidiphilium cryptum JF-5 hypothetical protein YP_001234152.1 1128867 D 349163 CDS YP_001234153.1 148260026 5160524 complement(1129329..1130018) 1 NC_009484.1 protein tyrosine/serine phosphatase 1130018 5160524 Acry_1017 Acidiphilium cryptum JF-5 protein tyrosine/serine phosphatase YP_001234153.1 1129329 R 349163 CDS YP_001234154.1 148260027 5160776 1130048..1130536 1 NC_009484.1 PFAM: CHAP domain containing protein; CHAP domain-containing protein 1130536 5160776 Acry_1018 Acidiphilium cryptum JF-5 CHAP domain-containing protein YP_001234154.1 1130048 D 349163 CDS YP_001234155.1 148260028 5160673 1130592..1132124 1 NC_009484.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; integral membrane protein MviN 1132124 5160673 Acry_1019 Acidiphilium cryptum JF-5 integral membrane protein MviN YP_001234155.1 1130592 D 349163 CDS YP_001234156.1 148260029 5160674 1132168..1133169 1 NC_009484.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 1133169 5160674 Acry_1020 Acidiphilium cryptum JF-5 tryptophanyl-tRNA synthetase YP_001234156.1 1132168 D 349163 CDS YP_001234157.1 148260030 5160521 complement(1133229..1134647) 1 NC_009484.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase 1134647 5160521 Acry_1021 Acidiphilium cryptum JF-5 phosphomannomutase YP_001234157.1 1133229 R 349163 CDS YP_001234158.1 148260031 5160262 complement(1134640..1135518) 1 NC_009484.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1135518 5160262 Acry_1022 Acidiphilium cryptum JF-5 UTP-glucose-1-phosphate uridylyltransferase YP_001234158.1 1134640 R 349163 CDS YP_001234159.1 148260032 5160263 1135658..1136080 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; dehydratase 1136080 5160263 Acry_1023 Acidiphilium cryptum JF-5 dehydratase YP_001234159.1 1135658 D 349163 CDS YP_001234160.1 148260033 5160513 complement(1136088..1136990) 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1136990 5160513 Acry_1024 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001234160.1 1136088 R 349163 CDS YP_001234161.1 148260034 5160319 complement(1137080..1137610) 1 NC_009484.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1137610 nusG 5160319 nusG Acidiphilium cryptum JF-5 transcription antitermination protein NusG YP_001234161.1 1137080 R 349163 CDS YP_001234162.1 148260035 5160320 complement(1137620..1137814) 1 NC_009484.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE 1137814 5160320 Acry_1026 Acidiphilium cryptum JF-5 preprotein translocase subunit SecE YP_001234162.1 1137620 R 349163 CDS YP_001234163.1 148260036 5161636 1138376..1138648 1 NC_009484.1 hypothetical protein 1138648 5161636 Acry_1027 Acidiphilium cryptum JF-5 hypothetical protein YP_001234163.1 1138376 D 349163 CDS YP_001234164.1 148260037 5160461 1138857..1139630 1 NC_009484.1 hypothetical protein 1139630 5160461 Acry_1028 Acidiphilium cryptum JF-5 hypothetical protein YP_001234164.1 1138857 D 349163 CDS YP_001234165.1 148260038 5161074 complement(1140129..1140752) 1 NC_009484.1 hypothetical protein 1140752 5161074 Acry_1030 Acidiphilium cryptum JF-5 hypothetical protein YP_001234165.1 1140129 R 349163 CDS YP_001234166.1 148260039 5160317 1141279..1144797 1 NC_009484.1 TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; outer membrane autotransporter 1144797 5160317 Acry_1031 Acidiphilium cryptum JF-5 outer membrane autotransporter YP_001234166.1 1141279 D 349163 CDS YP_001234167.1 148260040 5161075 1145054..1146697 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1146697 5161075 Acry_1032 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001234167.1 1145054 D 349163 CDS YP_001234168.1 148260041 5159932 1146712..1147737 1 NC_009484.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 1147737 5159932 Acry_1033 Acidiphilium cryptum JF-5 aldose 1-epimerase YP_001234168.1 1146712 D 349163 CDS YP_001234169.1 148260042 5159625 1147894..1148925 1 NC_009484.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1148925 recA 5159625 recA Acidiphilium cryptum JF-5 recombinase A YP_001234169.1 1147894 D 349163 CDS YP_001234170.1 148260043 5159728 1149274..1149576 1 NC_009484.1 hypothetical protein 1149576 5159728 Acry_1035 Acidiphilium cryptum JF-5 hypothetical protein YP_001234170.1 1149274 D 349163 CDS YP_001234171.1 148260044 5159729 complement(1149580..1149993) 1 NC_009484.1 hypothetical protein 1149993 5159729 Acry_1036 Acidiphilium cryptum JF-5 hypothetical protein YP_001234171.1 1149580 R 349163 CDS YP_001234172.1 148260045 5160117 complement(1150314..1151054) 1 NC_009484.1 hypothetical protein 1151054 5160117 Acry_1037 Acidiphilium cryptum JF-5 hypothetical protein YP_001234172.1 1150314 R 349163 CDS YP_001234173.1 148260046 5160168 1151079..1153715 1 NC_009484.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1153715 alaS 5160168 alaS Acidiphilium cryptum JF-5 alanyl-tRNA synthetase YP_001234173.1 1151079 D 349163 CDS YP_001234174.1 148260047 5160169 complement(1153735..1157547) 1 NC_009484.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; CopG domain protein DNA-binding domain protein; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 1157547 5160169 Acry_1039 Acidiphilium cryptum JF-5 delta-1-pyrroline-5-carboxylate dehydrogenase YP_001234174.1 1153735 R 349163 CDS YP_001234175.1 148260048 5159983 1157682..1159583 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; polysaccharide biosynthesis protein CapD 1159583 5159983 Acry_1040 Acidiphilium cryptum JF-5 polysaccharide biosynthesis protein CapD YP_001234175.1 1157682 D 349163 CDS YP_001234176.1 148260049 5160426 1159593..1160747 1 NC_009484.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1160747 5160426 Acry_1041 Acidiphilium cryptum JF-5 DegT/DnrJ/EryC1/StrS aminotransferase YP_001234176.1 1159593 D 349163 CDS YP_001234177.1 148260050 5160427 1160734..1161684 1 NC_009484.1 TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 1161684 5160427 Acry_1042 Acidiphilium cryptum JF-5 proline iminopeptidase YP_001234177.1 1160734 D 349163 CDS YP_001234178.1 148260051 5159921 1161838..1162821 1 NC_009484.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 1162821 5159921 Acry_1043 Acidiphilium cryptum JF-5 TRAP transporter solute receptor TAXI family protein YP_001234178.1 1161838 D 349163 CDS YP_001234179.1 148260052 5159823 1163022..1165598 1 NC_009484.1 RND efflux transporter 1165598 5159823 Acry_1044 Acidiphilium cryptum JF-5 RND efflux transporter YP_001234179.1 1163022 D 349163 CDS YP_001234180.1 148260053 5159824 1165595..1165801 1 NC_009484.1 related to arylsulfate sulfotransferase involved in siderophore biosynthesis-like protein; hypothetical protein 1165801 5159824 Acry_1045 Acidiphilium cryptum JF-5 hypothetical protein YP_001234180.1 1165595 D 349163 CDS YP_001234181.1 148260054 5160237 1165863..1167716 1 NC_009484.1 TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1167716 5160237 Acry_1046 Acidiphilium cryptum JF-5 dihydroxy-acid dehydratase YP_001234181.1 1165863 D 349163 CDS YP_001234182.1 148260055 5159495 complement(1167951..1169168) 1 NC_009484.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; major facilitator transporter 1169168 5159495 Acry_1047 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234182.1 1167951 R 349163 CDS YP_001234183.1 148260056 5159496 complement(1169370..1170080) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1170080 5159496 Acry_1048 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234183.1 1169370 R 349163 CDS YP_001234184.1 148260057 5160209 complement(1170077..1170841) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1170841 5160209 Acry_1049 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234184.1 1170077 R 349163 CDS YP_001234185.1 148260058 5160029 complement(1170838..1171824) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 1171824 5160029 Acry_1050 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234185.1 1170838 R 349163 CDS YP_001234186.1 148260059 5160030 complement(1171821..1172690) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 1172690 5160030 Acry_1051 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234186.1 1171821 R 349163 CDS YP_001234187.1 148260060 5159545 complement(1172812..1174065) 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1174065 5159545 Acry_1052 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001234187.1 1172812 R 349163 CDS YP_001234188.1 148260061 5159986 complement(1174273..1174977) 1 NC_009484.1 PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 1174977 5159986 Acry_1053 Acidiphilium cryptum JF-5 tRNA (guanine-N(7)-)-methyltransferase YP_001234188.1 1174273 R 349163 CDS YP_001234189.1 148260062 5159987 complement(1174967..1176154) 1 NC_009484.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1176154 5159987 Acry_1054 Acidiphilium cryptum JF-5 S-adenosylmethionine synthetase YP_001234189.1 1174967 R 349163 CDS YP_001234190.1 148260063 5162498 complement(1176276..1177019) 1 NC_009484.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1177019 5162498 Acry_1055 Acidiphilium cryptum JF-5 dihydrodipicolinate reductase YP_001234190.1 1176276 R 349163 CDS YP_001234191.1 148260064 5159697 complement(1177080..1177553) 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1177553 5159697 Acry_1056 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001234191.1 1177080 R 349163 CDS YP_001234192.1 148260065 5159636 complement(1177556..1179190) 1 NC_009484.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 1179190 5159636 Acry_1057 Acidiphilium cryptum JF-5 electron-transferring-flavoprotein dehydrogenase YP_001234192.1 1177556 R 349163 CDS YP_001234193.1 148260066 5159637 1179272..1180102 1 NC_009484.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; phage SPO1 DNA polymerase-like protein 1180102 5159637 Acry_1058 Acidiphilium cryptum JF-5 phage SPO1 DNA polymerase-like protein YP_001234193.1 1179272 D 349163 CDS YP_001234194.1 148260067 5162174 1180214..1182040 1 NC_009484.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 1182040 5162174 Acry_1059 Acidiphilium cryptum JF-5 lytic transglycosylase YP_001234194.1 1180214 D 349163 CDS YP_001234195.1 148260068 5160652 1182101..1183777 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1183777 5160652 Acry_1060 Acidiphilium cryptum JF-5 hypothetical protein YP_001234195.1 1182101 D 349163 CDS YP_001234196.1 148260069 5160653 complement(1183832..1184887) 1 NC_009484.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein 1184887 5160653 Acry_1061 Acidiphilium cryptum JF-5 oxidoreductase domain-containing protein YP_001234196.1 1183832 R 349163 CDS YP_001234197.1 148260070 5161439 complement(1184972..1185958) 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1185958 5161439 Acry_1062 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001234197.1 1184972 R 349163 CDS YP_001234198.1 148260071 5159491 complement(1186018..1187115) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1187115 5159491 Acry_1063 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234198.1 1186018 R 349163 CDS YP_001234199.1 148260072 5159492 complement(1187112..1188626) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1188626 5159492 Acry_1064 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234199.1 1187112 R 349163 CDS YP_001234200.1 148260073 5161906 complement(1188623..1189396) 1 NC_009484.1 periplasmic lipoprotein-like protein 1189396 5161906 Acry_1065 Acidiphilium cryptum JF-5 periplasmic lipoprotein-like protein YP_001234200.1 1188623 R 349163 CDS YP_001234201.1 148260074 5161416 1189581..1190336 1 NC_009484.1 Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 1190336 5161416 Acry_1066 Acidiphilium cryptum JF-5 transcriptional regulator NanR YP_001234201.1 1189581 D 349163 CDS YP_001234202.1 148260075 5161417 1190417..1191682 1 NC_009484.1 PFAM: ribulose bisphosphate carboxylase, large chain; RuBisCO-like protein 1191682 5161417 Acry_1067 Acidiphilium cryptum JF-5 RuBisCO-like protein YP_001234202.1 1190417 D 349163 CDS YP_001234203.1 148260076 5159843 1191679..1193070 1 NC_009484.1 PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein 1193070 5159843 Acry_1068 Acidiphilium cryptum JF-5 type III effector Hrp-dependent outer protein YP_001234203.1 1191679 D 349163 CDS YP_001234204.1 148260077 5159960 1193067..1193906 1 NC_009484.1 hypothetical protein 1193906 5159960 Acry_1069 Acidiphilium cryptum JF-5 hypothetical protein YP_001234204.1 1193067 D 349163 CDS YP_001234205.1 148260078 5159961 1193965..1195008 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 1195008 5159961 Acry_1070 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001234205.1 1193965 D 349163 CDS YP_001234206.1 148260079 5159688 1195024..1197480 1 NC_009484.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; inner-membrane translocator 1197480 5159688 Acry_1071 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234206.1 1195024 D 349163 CDS YP_001234207.1 148260080 5159839 1197477..1198430 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 1198430 5159839 Acry_1072 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234207.1 1197477 D 349163 CDS YP_001234208.1 148260081 5159840 1198499..1199245 1 NC_009484.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1199245 5159840 Acry_1073 Acidiphilium cryptum JF-5 NADPH-dependent FMN reductase YP_001234208.1 1198499 D 349163 CDS YP_001234209.1 148260082 5162502 1199256..1200191 1 NC_009484.1 PFAM: phosphate transporter; phosphate transporter 1200191 5162502 Acry_1074 Acidiphilium cryptum JF-5 phosphate transporter YP_001234209.1 1199256 D 349163 CDS YP_001234210.1 148260083 5161627 1201026..1202162 1 NC_009484.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS 1202162 5161627 Acry_1076 Acidiphilium cryptum JF-5 mechanosensitive ion channel MscS YP_001234210.1 1201026 D 349163 CDS YP_001234211.1 148260084 5161122 complement(1202181..1202759) 1 NC_009484.1 PFAM: Nitrile hydratase alpha chain; nitrile hydratase 1202759 5161122 Acry_1077 Acidiphilium cryptum JF-5 nitrile hydratase YP_001234211.1 1202181 R 349163 CDS YP_001234212.1 148260085 5162591 complement(1202756..1203049) 1 NC_009484.1 hypothetical protein 1203049 5162591 Acry_1078 Acidiphilium cryptum JF-5 hypothetical protein YP_001234212.1 1202756 R 349163 CDS YP_001234213.1 148260086 5162520 complement(1203043..1203369) 1 NC_009484.1 hypothetical protein 1203369 5162520 Acry_1079 Acidiphilium cryptum JF-5 hypothetical protein YP_001234213.1 1203043 R 349163 CDS YP_001234214.1 148260087 5162521 complement(1203515..1204942) 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1204942 5162521 Acry_1080 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234214.1 1203515 R 349163 CDS YP_001234215.1 148260088 5161650 1205141..1206403 1 NC_009484.1 TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase 1206403 5161650 Acry_1081 Acidiphilium cryptum JF-5 fumarylacetoacetase YP_001234215.1 1205141 D 349163 CDS YP_001234216.1 148260089 5162125 complement(1206464..1207405) 1 NC_009484.1 hypothetical protein 1207405 5162125 Acry_1082 Acidiphilium cryptum JF-5 hypothetical protein YP_001234216.1 1206464 R 349163 CDS YP_001234217.1 148260090 5162126 complement(1207440..1208072) 1 NC_009484.1 hypothetical protein 1208072 5162126 Acry_1083 Acidiphilium cryptum JF-5 hypothetical protein YP_001234217.1 1207440 R 349163 CDS YP_001234218.1 148260091 5162549 complement(1208098..1208664) 1 NC_009484.1 hypothetical protein 1208664 5162549 Acry_1084 Acidiphilium cryptum JF-5 hypothetical protein YP_001234218.1 1208098 R 349163 CDS YP_001234219.1 148260092 5162407 1208787..1210400 1 NC_009484.1 hypothetical protein 1210400 5162407 Acry_1085 Acidiphilium cryptum JF-5 hypothetical protein YP_001234219.1 1208787 D 349163 CDS YP_001234220.1 148260093 5162408 complement(1210422..1211339) 1 NC_009484.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 1211339 5162408 Acry_1086 Acidiphilium cryptum JF-5 alpha/beta hydrolase domain-containing protein YP_001234220.1 1210422 R 349163 CDS YP_001234221.1 148260094 5160415 complement(1211351..1212211) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1212211 5160415 Acry_1087 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234221.1 1211351 R 349163 CDS YP_001234222.1 148260095 5162453 complement(1212236..1213735) 1 NC_009484.1 flavoprotein involved in K+ transport-like protein 1213735 5162453 Acry_1088 Acidiphilium cryptum JF-5 flavoprotein involved in K+ transport-like protein YP_001234222.1 1212236 R 349163 CDS YP_001234223.1 148260096 5162454 1213871..1214554 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1214554 5162454 Acry_1089 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001234223.1 1213871 D 349163 CDS YP_001234224.1 148260097 5161276 complement(1214603..1216198) 1 NC_009484.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1216198 5161276 Acry_1090 Acidiphilium cryptum JF-5 isocitrate lyase YP_001234224.1 1214603 R 349163 CDS YP_001234225.1 148260098 5161502 complement(1216395..1217069) 1 NC_009484.1 hypothetical protein 1217069 5161502 Acry_1091 Acidiphilium cryptum JF-5 hypothetical protein YP_001234225.1 1216395 R 349163 CDS YP_001234226.1 148260099 5161503 complement(1217059..1217622) 1 NC_009484.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1217622 5161503 Acry_1092 Acidiphilium cryptum JF-5 ECF subfamily RNA polymerase sigma-24 factor YP_001234226.1 1217059 R 349163 CDS YP_001234227.1 148260100 5161856 complement(1217696..1218064) 1 NC_009484.1 hypothetical protein 1218064 5161856 Acry_1093 Acidiphilium cryptum JF-5 hypothetical protein YP_001234227.1 1217696 R 349163 CDS YP_001234228.1 148260101 5162060 complement(1218064..1218678) 1 NC_009484.1 Heme/copper-type cytochrome/quinol oxidase subunit 3-like protein 1218678 5162060 Acry_1094 Acidiphilium cryptum JF-5 Heme/copper-type cytochrome/quinol oxidase subunit 3-like protein YP_001234228.1 1218064 R 349163 CDS YP_001234229.1 148260102 5160226 complement(1218675..1220744) 1 NC_009484.1 PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase 1220744 5160226 Acry_1095 Acidiphilium cryptum JF-5 cytochrome-c oxidase YP_001234229.1 1218675 R 349163 CDS YP_001234230.1 148260103 5160227 complement(1220770..1221774) 1 NC_009484.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 1221774 5160227 Acry_1096 Acidiphilium cryptum JF-5 cytochrome c oxidase subunit II YP_001234230.1 1220770 R 349163 CDS YP_001234231.1 148260104 5159713 1222151..1222963 1 NC_009484.1 hypothetical protein 1222963 5159713 Acry_1097 Acidiphilium cryptum JF-5 hypothetical protein YP_001234231.1 1222151 D 349163 CDS YP_001234232.1 148260105 5160249 complement(1222977..1223987) 1 NC_009484.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 1223987 5160249 Acry_1098 Acidiphilium cryptum JF-5 bile acid:sodium symporter YP_001234232.1 1222977 R 349163 CDS YP_001234233.1 148260106 5160250 1224048..1224962 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1224962 5160250 Acry_1099 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234233.1 1224048 D 349163 CDS YP_001234234.1 148260107 5161298 complement(1224990..1225931) 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1225931 5161298 Acry_1100 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001234234.1 1224990 R 349163 CDS YP_001234235.1 148260108 5160351 complement(1226267..1226578) 1 NC_009484.1 hypothetical protein 1226578 5160351 Acry_1101 Acidiphilium cryptum JF-5 hypothetical protein YP_001234235.1 1226267 R 349163 CDS YP_001234236.1 148260109 5161689 1229056..1229715 1 NC_009484.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 1229715 5161689 Acry_1104 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001234236.1 1229056 D 349163 CDS YP_001234237.1 148260110 5160841 1229654..1232644 1 NC_009484.1 PFAM: transposase Tn3 family protein; transposase Tn3 family protein 1232644 5160841 Acry_1105 Acidiphilium cryptum JF-5 transposase Tn3 family protein YP_001234237.1 1229654 D 349163 CDS YP_001234238.1 148260111 5161690 complement(1233013..1233444) 1 NC_009484.1 PFAM: CBS domain containing protein; signal-transduction protein 1233444 5161690 Acry_1107 Acidiphilium cryptum JF-5 signal-transduction protein YP_001234238.1 1233013 R 349163 CDS YP_001234239.1 148260112 5160991 complement(1233728..1235188) 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1235188 5160991 Acry_1108 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit N YP_001234239.1 1233728 R 349163 CDS YP_001234240.1 148260113 5160916 complement(1235185..1236702) 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1236702 5160916 Acry_1109 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit M YP_001234240.1 1235185 R 349163 CDS YP_001234241.1 148260114 5160066 complement(1236699..1238555) 1 NC_009484.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1238555 5160066 Acry_1110 Acidiphilium cryptum JF-5 proton-translocating NADH-quinone oxidoreductase subunit L YP_001234241.1 1236699 R 349163 CDS YP_001234242.1 148260115 5160067 complement(1238560..1238868) 1 NC_009484.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1238868 5160067 Acry_1111 Acidiphilium cryptum JF-5 NADH-ubiquinone oxidoreductase subunit 4L YP_001234242.1 1238560 R 349163 CDS YP_001234243.1 148260116 5161034 complement(1238873..1239373) 1 NC_009484.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1239373 5161034 Acry_1112 Acidiphilium cryptum JF-5 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_001234243.1 1238873 R 349163 CDS YP_001234244.1 148260117 5160913 complement(1239405..1239917) 1 NC_009484.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I 1239917 5160913 Acry_1113 Acidiphilium cryptum JF-5 NADH-quinone oxidoreductase subunit I YP_001234244.1 1239405 R 349163 CDS YP_001234245.1 148260118 5160914 complement(1239931..1240902) 1 NC_009484.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1240902 5160914 Acry_1114 Acidiphilium cryptum JF-5 NADH dehydrogenase subunit H YP_001234245.1 1239931 R 349163 CDS YP_001234246.1 148260119 5160690 complement(1240899..1243607) 1 NC_009484.1 TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; NADH-quinone oxidoreductase subunit G 1243607 5160690 Acry_1115 Acidiphilium cryptum JF-5 NADH-quinone oxidoreductase subunit G YP_001234246.1 1240899 R 349163 CDS YP_001234247.1 148260120 5162599 complement(1243604..1244908) 1 NC_009484.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) 1244908 5162599 Acry_1116 Acidiphilium cryptum JF-5 NADH dehydrogenase (quinone) YP_001234247.1 1243604 R 349163 CDS YP_001234248.1 148260121 5162600 complement(1244908..1245405) 1 NC_009484.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1245405 5162600 Acry_1117 Acidiphilium cryptum JF-5 NADH-quinone oxidoreductase subunit E YP_001234248.1 1244908 R 349163 CDS YP_001234249.1 148260122 5162138 complement(1245392..1247170) 1 NC_009484.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 1247170 5162138 Acry_1118 Acidiphilium cryptum JF-5 bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001234249.1 1245392 R 349163 CDS YP_001234250.1 148260123 5162496 complement(1247181..1247876) 1 NC_009484.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH-quinone oxidoreductase subunit B 1247876 5162496 Acry_1119 Acidiphilium cryptum JF-5 NADH-quinone oxidoreductase subunit B YP_001234250.1 1247181 R 349163 CDS YP_001234251.1 148260124 5162497 complement(1247881..1248279) 1 NC_009484.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1248279 5162497 Acry_1120 Acidiphilium cryptum JF-5 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_001234251.1 1247881 R 349163 CDS YP_001234252.1 148260125 5161327 complement(1248465..1251122) 1 NC_009484.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase 1251122 5161327 Acry_1121 Acidiphilium cryptum JF-5 P-type HAD superfamily ATPase YP_001234252.1 1248465 R 349163 CDS YP_001234253.1 148260126 5159518 complement(1251109..1252125) 1 NC_009484.1 PFAM: sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 1252125 5159518 Acry_1122 Acidiphilium cryptum JF-5 sodium/calcium exchanger membrane region YP_001234253.1 1251109 R 349163 CDS YP_001234254.1 148260127 5159519 complement(1252318..1253367) 1 NC_009484.1 PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; oxidoreductase domain-containing protein 1253367 5159519 Acry_1123 Acidiphilium cryptum JF-5 oxidoreductase domain-containing protein YP_001234254.1 1252318 R 349163 CDS YP_001234255.1 148260128 5162485 complement(1253445..1254461) 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase 1254461 5162485 Acry_1124 Acidiphilium cryptum JF-5 molybdopterin dehydrogenase YP_001234255.1 1253445 R 349163 CDS YP_001234256.1 148260129 5159810 complement(1254458..1256722) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1256722 5159810 Acry_1125 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001234256.1 1254458 R 349163 CDS YP_001234257.1 148260130 5159811 1256785..1257591 1 NC_009484.1 hypothetical protein 1257591 5159811 Acry_1126 Acidiphilium cryptum JF-5 hypothetical protein YP_001234257.1 1256785 D 349163 CDS YP_001234258.1 148260131 5160585 1257588..1257866 1 NC_009484.1 PFAM: protein of unknown function DUF156; hypothetical protein 1257866 5160585 Acry_1127 Acidiphilium cryptum JF-5 hypothetical protein YP_001234258.1 1257588 D 349163 CDS YP_001234259.1 148260132 5162518 1257875..1259173 1 NC_009484.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1259173 5162518 Acry_1128 Acidiphilium cryptum JF-5 cation diffusion facilitator family transporter YP_001234259.1 1257875 D 349163 CDS YP_001234260.1 148260133 5162519 complement(1259205..1259600) 1 NC_009484.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 1259600 5162519 Acry_1129 Acidiphilium cryptum JF-5 MerR family transcriptional regulator YP_001234260.1 1259205 R 349163 CDS YP_001234261.1 148260134 5162278 1259679..1260386 1 NC_009484.1 Co/Zn/Cd cation transporter-like protein 1260386 5162278 Acry_1130 Acidiphilium cryptum JF-5 Co/Zn/Cd cation transporter-like protein YP_001234261.1 1259679 D 349163 CDS YP_001234262.1 148260135 5162544 1260419..1261393 1 NC_009484.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1261393 5162544 Acry_1131 Acidiphilium cryptum JF-5 cation diffusion facilitator family transporter YP_001234262.1 1260419 D 349163 CDS YP_001234263.1 148260136 5162545 complement(1261415..1262929) 1 NC_009484.1 PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 2 1262929 5162545 Acry_1132 Acidiphilium cryptum JF-5 multicopper oxidase, type 2 YP_001234263.1 1261415 R 349163 CDS YP_001234264.1 148260137 5162422 complement(1262999..1263322) 1 NC_009484.1 hypothetical protein 1263322 5162422 Acry_1133 Acidiphilium cryptum JF-5 hypothetical protein YP_001234264.1 1262999 R 349163 CDS YP_001234265.1 148260138 5162178 1263582..1264757 1 NC_009484.1 PFAM: acyltransferase 3; acyltransferase 3 1264757 5162178 Acry_1134 Acidiphilium cryptum JF-5 acyltransferase 3 YP_001234265.1 1263582 D 349163 CDS YP_001234266.1 148260139 5161742 1265131..1265955 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1265955 5161742 Acry_1135 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001234266.1 1265131 D 349163 CDS YP_001234267.1 148260140 5161743 1265971..1266723 1 NC_009484.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1266723 5161743 Acry_1136 Acidiphilium cryptum JF-5 polar amino acid ABC transporter inner membrane subunit YP_001234267.1 1265971 D 349163 CDS YP_001234268.1 148260141 5160556 1266723..1267487 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1267487 5160556 Acry_1137 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234268.1 1266723 D 349163 CDS YP_001234269.1 148260142 5162414 complement(1267534..1268520) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 1268520 5162414 Acry_1138 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234269.1 1267534 R 349163 CDS YP_001234270.1 148260143 5162415 complement(1268517..1269521) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1269521 5162415 Acry_1139 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234270.1 1268517 R 349163 CDS YP_001234271.1 148260144 5161408 complement(1269508..1271082) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1271082 5161408 Acry_1140 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234271.1 1269508 R 349163 CDS YP_001234272.1 148260145 5162291 complement(1271108..1272199) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 1272199 5162291 Acry_1141 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001234272.1 1271108 R 349163 CDS YP_001234273.1 148260146 5162292 complement(1272301..1273350) 1 NC_009484.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1273350 5162292 Acry_1142 Acidiphilium cryptum JF-5 4-hydroxythreonine-4-phosphate dehydrogenase YP_001234273.1 1272301 R 349163 CDS YP_001234274.1 148260147 5162068 complement(1273484..1274608) 1 NC_009484.1 hypothetical protein 1274608 5162068 Acry_1143 Acidiphilium cryptum JF-5 hypothetical protein YP_001234274.1 1273484 R 349163 CDS YP_001234275.1 148260148 5161928 complement(1274605..1275438) 1 NC_009484.1 PFAM: regulatory protein, DeoR; DeoR family transcriptional regulator 1275438 5161928 Acry_1144 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001234275.1 1274605 R 349163 CDS YP_001234276.1 148260149 5161929 complement(1275490..1276470) 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 1276470 5161929 Acry_1145 Acidiphilium cryptum JF-5 AraC family transcriptional regulator YP_001234276.1 1275490 R 349163 CDS YP_001234277.1 148260150 5160109 1276580..1277221 1 NC_009484.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal-dependent phosphohydrolase 1277221 5160109 Acry_1146 Acidiphilium cryptum JF-5 metal-dependent phosphohydrolase YP_001234277.1 1276580 D 349163 CDS YP_001234278.1 148260151 5160075 1277263..1278702 1 NC_009484.1 PFAM: Catalase domain protein; catalase 1278702 5160075 Acry_1147 Acidiphilium cryptum JF-5 catalase YP_001234278.1 1277263 D 349163 CDS YP_001234279.1 148260152 5160076 complement(1278571..1280031) 1 NC_009484.1 PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase 1280031 5160076 Acry_1148 Acidiphilium cryptum JF-5 amidohydrolase YP_001234279.1 1278571 R 349163 CDS YP_001234280.1 148260153 5161507 complement(1280041..1281429) 1 NC_009484.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1281429 5161507 Acry_1149 Acidiphilium cryptum JF-5 cytosine/purines uracil thiamine allantoin permease YP_001234280.1 1280041 R 349163 CDS YP_001234281.1 148260154 5161569 complement(1281469..1282011) 1 NC_009484.1 hypothetical protein 1282011 5161569 Acry_1150 Acidiphilium cryptum JF-5 hypothetical protein YP_001234281.1 1281469 R 349163 CDS YP_001234282.1 148260155 5161570 complement(1282008..1283207) 1 NC_009484.1 PFAM: protein of unknown function DUF989; hypothetical protein 1283207 5161570 Acry_1151 Acidiphilium cryptum JF-5 hypothetical protein YP_001234282.1 1282008 R 349163 CDS YP_001234283.1 148260156 5162451 complement(1283213..1283563) 1 NC_009484.1 PFAM: Transthyretin; transthyretin 1283563 5162451 Acry_1152 Acidiphilium cryptum JF-5 transthyretin YP_001234283.1 1283213 R 349163 CDS YP_001234284.1 148260157 5162448 complement(1283652..1284524) 1 NC_009484.1 PFAM: protein of unknown function DUF182; hypothetical protein 1284524 5162448 Acry_1153 Acidiphilium cryptum JF-5 hypothetical protein YP_001234284.1 1283652 R 349163 CDS YP_001234285.1 148260158 5162449 complement(1284521..1286959) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase 1286959 5162449 Acry_1154 Acidiphilium cryptum JF-5 xanthine dehydrogenase YP_001234285.1 1284521 R 349163 CDS YP_001234286.1 148260159 5160963 complement(1286956..1288512) 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase 1288512 5160963 Acry_1155 Acidiphilium cryptum JF-5 molybdopterin dehydrogenase YP_001234286.1 1286956 R 349163 CDS YP_001234287.1 148260160 5162346 complement(1288607..1289527) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1289527 5162346 Acry_1156 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234287.1 1288607 R 349163 CDS YP_001234288.1 148260161 5162347 1289682..1291466 1 NC_009484.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 1291466 5162347 Acry_1157 Acidiphilium cryptum JF-5 glyoxylate carboligase YP_001234288.1 1289682 D 349163 CDS YP_001234289.1 148260162 5162589 1291486..1292292 1 NC_009484.1 PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 1292292 5162589 Acry_1158 Acidiphilium cryptum JF-5 hydroxypyruvate isomerase YP_001234289.1 1291486 D 349163 CDS YP_001234290.1 148260163 5162261 1292289..1293167 1 NC_009484.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1293167 5162261 Acry_1159 Acidiphilium cryptum JF-5 2-hydroxy-3-oxopropionate reductase YP_001234290.1 1292289 D 349163 CDS YP_001234291.1 148260164 5162262 1293167..1294486 1 NC_009484.1 PFAM: MOFRL domain protein; hydroxypyruvate reductase 1294486 5162262 Acry_1160 Acidiphilium cryptum JF-5 hydroxypyruvate reductase YP_001234291.1 1293167 D 349163 CDS YP_001234292.1 148260165 5162362 1294492..1295787 1 NC_009484.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 1295787 5162362 Acry_1161 Acidiphilium cryptum JF-5 amidase YP_001234292.1 1294492 D 349163 CDS YP_001234293.1 148260166 5162275 1295790..1297034 1 NC_009484.1 PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase M20 1297034 5162275 Acry_1162 Acidiphilium cryptum JF-5 peptidase M20 YP_001234293.1 1295790 D 349163 CDS YP_001234294.1 148260167 5162276 1297072..1297995 1 NC_009484.1 PFAM: polysaccharide deacetylase; chitin deacetylase 1297995 5162276 Acry_1163 Acidiphilium cryptum JF-5 chitin deacetylase YP_001234294.1 1297072 D 349163 CDS YP_001234295.1 148260168 5162406 1298015..1298938 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1298938 5162406 Acry_1164 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234295.1 1298015 D 349163 CDS YP_001234296.1 148260169 5161713 complement(1298942..1299280) 1 NC_009484.1 hypothetical protein 1299280 5161713 Acry_1165 Acidiphilium cryptum JF-5 hypothetical protein YP_001234296.1 1298942 R 349163 CDS YP_001234297.1 148260170 5161714 complement(1299633..1302785) 1 NC_009484.1 PFAM: Collagen triple helix repeat; triple helix repeat-containing collagen 1302785 5161714 Acry_1166 Acidiphilium cryptum JF-5 triple helix repeat-containing collagen YP_001234297.1 1299633 R 349163 CDS YP_001234298.1 148260171 5162528 complement(1302857..1303126) 1 NC_009484.1 hypothetical protein 1303126 5162528 Acry_1167 Acidiphilium cryptum JF-5 hypothetical protein YP_001234298.1 1302857 R 349163 CDS YP_001234299.1 148260172 5160438 1303307..1303813 1 NC_009484.1 hypothetical protein 1303813 5160438 Acry_1168 Acidiphilium cryptum JF-5 hypothetical protein YP_001234299.1 1303307 D 349163 CDS YP_001234300.1 148260173 5160439 1304227..1304487 1 NC_009484.1 hypothetical protein 1304487 5160439 Acry_1169 Acidiphilium cryptum JF-5 hypothetical protein YP_001234300.1 1304227 D 349163 CDS YP_001234301.1 148260174 5160745 1304664..1305902 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 1305902 5160745 Acry_1170 Acidiphilium cryptum JF-5 phage integrase family protein YP_001234301.1 1304664 D 349163 CDS YP_001234302.1 148260175 5162409 1306311..1308464 1 NC_009484.1 hypothetical protein 1308464 5162409 Acry_1171 Acidiphilium cryptum JF-5 hypothetical protein YP_001234302.1 1306311 D 349163 CDS YP_001234303.1 148260176 5161613 1308565..1309326 1 NC_009484.1 hypothetical protein 1309326 5161613 Acry_1172 Acidiphilium cryptum JF-5 hypothetical protein YP_001234303.1 1308565 D 349163 CDS YP_001234304.1 148260177 5161614 1309319..1309714 1 NC_009484.1 hypothetical protein 1309714 5161614 Acry_1173 Acidiphilium cryptum JF-5 hypothetical protein YP_001234304.1 1309319 D 349163 CDS YP_001234305.1 148260178 5162341 1309852..1310742 1 NC_009484.1 hypothetical protein 1310742 5162341 Acry_1174 Acidiphilium cryptum JF-5 hypothetical protein YP_001234305.1 1309852 D 349163 CDS YP_001234306.1 148260179 5161692 1310946..1311572 1 NC_009484.1 hypothetical protein 1311572 5161692 Acry_1175 Acidiphilium cryptum JF-5 hypothetical protein YP_001234306.1 1310946 D 349163 CDS YP_001234307.1 148260180 5161693 1311716..1312183 1 NC_009484.1 hypothetical protein 1312183 5161693 Acry_1176 Acidiphilium cryptum JF-5 hypothetical protein YP_001234307.1 1311716 D 349163 CDS YP_001234308.1 148260181 5161775 complement(1312752..1313306) 1 NC_009484.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1313306 5161775 Acry_1177 Acidiphilium cryptum JF-5 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001234308.1 1312752 R 349163 CDS YP_001234309.1 148260182 5161655 complement(1313303..1313812) 1 NC_009484.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 1313812 5161655 Acry_1178 Acidiphilium cryptum JF-5 pantetheine-phosphate adenylyltransferase YP_001234309.1 1313303 R 349163 CDS YP_001234310.1 148260183 5161656 complement(1313805..1316537) 1 NC_009484.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1316537 5161656 Acry_1179 Acidiphilium cryptum JF-5 DNA gyrase subunit A YP_001234310.1 1313805 R 349163 CDS YP_001234311.1 148260184 5162602 complement(1316583..1317293) 1 NC_009484.1 phytoene/squalene synthetase-like protein 1317293 5162602 Acry_1180 Acidiphilium cryptum JF-5 phytoene/squalene synthetase-like protein YP_001234311.1 1316583 R 349163 CDS YP_001234312.1 148260185 5161826 1317411..1318016 1 NC_009484.1 PFAM: manganese and iron superoxide dismutase; superoxide dismutase 1318016 5161826 Acry_1181 Acidiphilium cryptum JF-5 superoxide dismutase YP_001234312.1 1317411 D 349163 CDS YP_001234313.1 148260186 5161827 complement(1318086..1318445) 1 NC_009484.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 1318445 5161827 Acry_1182 Acidiphilium cryptum JF-5 preprotein translocase subunit YajC YP_001234313.1 1318086 R 349163 CDS YP_001234314.1 148260187 5162069 1318556..1319425 1 NC_009484.1 PFAM: protein of unknown function DUF815; hypothetical protein 1319425 5162069 Acry_1183 Acidiphilium cryptum JF-5 hypothetical protein YP_001234314.1 1318556 D 349163 CDS YP_001234315.1 148260188 5160812 1319492..1320241 1 NC_009484.1 TIGRFAM: TonB family protein; TonB family protein 1320241 5160812 Acry_1184 Acidiphilium cryptum JF-5 TonB family protein YP_001234315.1 1319492 D 349163 CDS YP_001234316.1 148260189 5160813 1320320..1321918 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1321918 5160813 Acry_1185 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001234316.1 1320320 D 349163 CDS YP_001234317.1 148260190 5162461 1321924..1322868 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1322868 5162461 Acry_1186 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001234317.1 1321924 D 349163 CDS YP_001234318.1 148260191 5161082 1322865..1323728 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1323728 5161082 Acry_1187 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001234318.1 1322865 D 349163 CDS YP_001234319.1 148260192 5161083 1323725..1325557 1 NC_009484.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1325557 5161083 Acry_1188 Acidiphilium cryptum JF-5 oligopeptide/dipeptide ABC transporter ATPase YP_001234319.1 1323725 D 349163 CDS YP_001234320.1 148260193 5161062 1325554..1326225 1 NC_009484.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1326225 5161062 Acry_1189 Acidiphilium cryptum JF-5 MotA/TolQ/ExbB proton channel YP_001234320.1 1325554 D 349163 CDS YP_001234321.1 148260194 5162567 1326229..1326642 1 NC_009484.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1326642 5162567 Acry_1190 Acidiphilium cryptum JF-5 biopolymer transport protein ExbD/TolR YP_001234321.1 1326229 D 349163 CDS YP_001234322.1 148260195 5162568 1326608..1327549 1 NC_009484.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1327549 xerC 5162568 xerC Acidiphilium cryptum JF-5 site-specific tyrosine recombinase XerC YP_001234322.1 1326608 D 349163 CDS YP_001234323.1 148260196 5162476 complement(1327552..1328085) 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1328085 5162476 Acry_1192 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001234323.1 1327552 R 349163 CDS YP_001234324.1 148260197 5162494 complement(1328082..1329362) 1 NC_009484.1 PFAM: Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein 1329362 5162494 Acry_1193 Acidiphilium cryptum JF-5 Fmu (Sun) domain-containing protein YP_001234324.1 1328082 R 349163 CDS YP_001234325.1 148260198 5162495 complement(1329366..1330865) 1 NC_009484.1 TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1330865 5162495 Acry_1194 Acidiphilium cryptum JF-5 inosine-5'-monophosphate dehydrogenase YP_001234325.1 1329366 R 349163 CDS YP_001234326.1 148260199 5162230 1331421..1333379 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1333379 5162230 Acry_1195 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001234326.1 1331421 D 349163 CDS YP_001234327.1 148260200 5162129 complement(1333387..1334004) 1 NC_009484.1 PFAM: protein of unknown function DUF1211; hypothetical protein 1334004 5162129 Acry_1196 Acidiphilium cryptum JF-5 hypothetical protein YP_001234327.1 1333387 R 349163 CDS YP_001234328.1 148260201 5162130 complement(1334037..1334999) 1 NC_009484.1 hypothetical protein 1334999 5162130 Acry_1197 Acidiphilium cryptum JF-5 hypothetical protein YP_001234328.1 1334037 R 349163 CDS YP_001234329.1 148260202 5160875 complement(1335010..1335915) 1 NC_009484.1 PFAM: Polyprenyl synthetase; polyprenyl synthetase 1335915 5160875 Acry_1198 Acidiphilium cryptum JF-5 polyprenyl synthetase YP_001234329.1 1335010 R 349163 CDS YP_001234330.1 148260203 5162492 complement(1335912..1336178) 1 NC_009484.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1336178 5162492 Acry_1199 Acidiphilium cryptum JF-5 exodeoxyribonuclease VII small subunit YP_001234330.1 1335912 R 349163 CDS YP_001234331.1 148260204 5162493 complement(1336217..1337146) 1 NC_009484.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 1337146 5162493 Acry_1200 Acidiphilium cryptum JF-5 histone deacetylase superfamily protein YP_001234331.1 1336217 R 349163 CDS YP_001234332.1 148260205 5159686 complement(1337175..1337453) 1 NC_009484.1 PFAM: SirA family protein; SirA family protein 1337453 5159686 Acry_1201 Acidiphilium cryptum JF-5 SirA family protein YP_001234332.1 1337175 R 349163 CDS YP_001234333.1 148260206 5162202 1337539..1338435 1 NC_009484.1 PFAM: ROK family protein; ROK family protein 1338435 5162202 Acry_1202 Acidiphilium cryptum JF-5 ROK family protein YP_001234333.1 1337539 D 349163 CDS YP_001234334.1 148260207 5162203 complement(1338445..1339215) 1 NC_009484.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase 1339215 5162203 Acry_1203 Acidiphilium cryptum JF-5 3'(2'),5'-bisphosphate nucleotidase YP_001234334.1 1338445 R 349163 CDS YP_001234335.1 148260208 5162475 1339308..1340852 1 NC_009484.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1340852 5162475 Acry_1204 Acidiphilium cryptum JF-5 leucyl aminopeptidase YP_001234335.1 1339308 D 349163 CDS YP_001234336.1 148260209 5161530 1340917..1341933 1 NC_009484.1 capsular polysaccharide biosynthesis protein-like protein 1341933 5161530 Acry_1205 Acidiphilium cryptum JF-5 capsular polysaccharide biosynthesis protein-like protein YP_001234336.1 1340917 D 349163 CDS YP_001234337.1 148260210 5161531 complement(1341924..1342451) 1 NC_009484.1 PFAM: Uncharacterized protein UPF0114; hypothetical protein 1342451 5161531 Acry_1206 Acidiphilium cryptum JF-5 hypothetical protein YP_001234337.1 1341924 R 349163 CDS YP_001234338.1 148260211 5160662 complement(1342448..1344514) 1 NC_009484.1 PFAM: protein of unknown function DUF893, YccS/YhfK; hypothetical protein 1344514 5160662 Acry_1207 Acidiphilium cryptum JF-5 hypothetical protein YP_001234338.1 1342448 R 349163 CDS YP_001234339.1 148260212 5159648 complement(1344501..1346735) 1 NC_009484.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1346735 5159648 Acry_1208 Acidiphilium cryptum JF-5 DNA topoisomerase IV subunit A YP_001234339.1 1344501 R 349163 CDS YP_001234340.1 148260213 5159649 complement(1346725..1347480) 1 NC_009484.1 TIGRFAM: DNA repair protein RecO; DNA repair protein RecO 1347480 5159649 Acry_1209 Acidiphilium cryptum JF-5 DNA repair protein RecO YP_001234340.1 1346725 R 349163 CDS YP_001234341.1 148260214 5160026 complement(1347493..1348716) 1 NC_009484.1 hypothetical protein 1348716 5160026 Acry_1210 Acidiphilium cryptum JF-5 hypothetical protein YP_001234341.1 1347493 R 349163 CDS YP_001234342.1 148260215 5159725 complement(1348720..1349874) 1 NC_009484.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1349874 5159725 Acry_1211 Acidiphilium cryptum JF-5 amidohydrolase YP_001234342.1 1348720 R 349163 CDS YP_001234343.1 148260216 5160015 complement(1350433..1350690) 1 NC_009484.1 hypothetical protein 1350690 5160015 Acry_1213 Acidiphilium cryptum JF-5 hypothetical protein YP_001234343.1 1350433 R 349163 CDS YP_001234344.1 148260217 5159480 1350916..1351971 1 NC_009484.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase 1351971 5159480 Acry_1214 Acidiphilium cryptum JF-5 dTDP-glucose 4,6-dehydratase YP_001234344.1 1350916 D 349163 CDS YP_001234345.1 148260218 5159893 1351968..1352849 1 NC_009484.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 1352849 5159893 Acry_1215 Acidiphilium cryptum JF-5 glucose-1-phosphate thymidylyltransferase YP_001234345.1 1351968 D 349163 CDS YP_001234346.1 148260219 5159894 1352846..1353400 1 NC_009484.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1353400 5159894 Acry_1216 Acidiphilium cryptum JF-5 dTDP-4-dehydrorhamnose 3,5-epimerase YP_001234346.1 1352846 D 349163 CDS YP_001234347.1 148260220 5159916 1353402..1354307 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase 1354307 5159916 Acry_1217 Acidiphilium cryptum JF-5 dTDP-4-dehydrorhamnose reductase YP_001234347.1 1353402 D 349163 CDS YP_001234348.1 148260221 5159553 1354304..1355209 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1355209 5159553 Acry_1218 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234348.1 1354304 D 349163 CDS YP_001234349.1 148260222 5159554 complement(1355222..1357009) 1 NC_009484.1 PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 1357009 5159554 Acry_1219 Acidiphilium cryptum JF-5 ABC transporter YP_001234349.1 1355222 R 349163 CDS YP_001234350.1 148260223 5159933 1357253..1359286 1 NC_009484.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; transketolase 1359286 5159933 Acry_1220 Acidiphilium cryptum JF-5 transketolase YP_001234350.1 1357253 D 349163 CDS YP_001234351.1 148260224 5160113 1359351..1360364 1 NC_009484.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1360364 5160113 Acry_1221 Acidiphilium cryptum JF-5 glyceraldehyde-3-phosphate dehydrogenase, type I YP_001234351.1 1359351 D 349163 CDS YP_001234352.1 148260225 5160114 1360364..1361557 1 NC_009484.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1361557 pgk 5160114 pgk Acidiphilium cryptum JF-5 phosphoglycerate kinase YP_001234352.1 1360364 D 349163 CDS YP_001234353.1 148260226 5160649 complement(1361619..1363070) 1 NC_009484.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1363070 5160649 Acry_1223 Acidiphilium cryptum JF-5 C69 family peptidase YP_001234353.1 1361619 R 349163 CDS YP_001234354.1 148260227 5159962 complement(1363067..1364143) 1 NC_009484.1 PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly 1364143 5159962 Acry_1224 Acidiphilium cryptum JF-5 cytochrome oxidase assembly YP_001234354.1 1363067 R 349163 CDS YP_001234355.1 148260228 5159963 complement(1364140..1365243) 1 NC_009484.1 PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly 1365243 5159963 Acry_1225 Acidiphilium cryptum JF-5 cytochrome oxidase assembly YP_001234355.1 1364140 R 349163 CDS YP_001234356.1 148260229 5161357 1365487..1366761 1 NC_009484.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1366761 rho 5161357 rho Acidiphilium cryptum JF-5 transcription termination factor Rho YP_001234356.1 1365487 D 349163 CDS YP_001234357.1 148260230 5161933 1366764..1367387 1 NC_009484.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 1367387 5161933 Acry_1227 Acidiphilium cryptum JF-5 lysine exporter protein LysE/YggA YP_001234357.1 1366764 D 349163 CDS YP_001234358.1 148260231 5161934 1367464..1368771 1 NC_009484.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1368771 5161934 Acry_1228 Acidiphilium cryptum JF-5 S-adenosyl-L-homocysteine hydrolase YP_001234358.1 1367464 D 349163 CDS YP_001234359.1 148260232 5160342 1368782..1369180 1 NC_009484.1 hypothetical protein 1369180 5160342 Acry_1229 Acidiphilium cryptum JF-5 hypothetical protein YP_001234359.1 1368782 D 349163 CDS YP_001234360.1 148260233 5161382 complement(1369270..1370475) 1 NC_009484.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; molybdenum cofactor synthesis domain-containing protein 1370475 5161382 Acry_1230 Acidiphilium cryptum JF-5 molybdenum cofactor synthesis domain-containing protein YP_001234360.1 1369270 R 349163 CDS YP_001234361.1 148260234 5161383 complement(1370479..1370955) 1 NC_009484.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C 1370955 5161383 Acry_1231 Acidiphilium cryptum JF-5 molybdenum cofactor biosynthesis protein C YP_001234361.1 1370479 R 349163 CDS YP_001234362.1 148260235 5162226 complement(1370952..1371764) 1 NC_009484.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 1371764 trpC 5162226 trpC Acidiphilium cryptum JF-5 indole-3-glycerol-phosphate synthase YP_001234362.1 1370952 R 349163 CDS YP_001234363.1 148260236 5162293 complement(1371769..1373403) 1 NC_009484.1 bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase 1373403 5162293 Acry_1233 Acidiphilium cryptum JF-5 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase YP_001234363.1 1371769 R 349163 CDS YP_001234364.1 148260237 5162294 complement(1373400..1374914) 1 NC_009484.1 TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; anthranilate synthase component I 1374914 5162294 Acry_1234 Acidiphilium cryptum JF-5 anthranilate synthase component I YP_001234364.1 1373400 R 349163 CDS YP_001234365.1 148260238 5160821 complement(1374925..1376811) 1 NC_009484.1 hypothetical protein 1376811 5160821 Acry_1235 Acidiphilium cryptum JF-5 hypothetical protein YP_001234365.1 1374925 R 349163 CDS YP_001234366.1 148260239 5162402 1376923..1377684 1 NC_009484.1 PFAM: triosephosphate isomerase; Triose-phosphate isomerase 1377684 5162402 Acry_1236 Acidiphilium cryptum JF-5 Triose-phosphate isomerase YP_001234366.1 1376923 D 349163 CDS YP_001234367.1 148260240 5162403 1377794..1378276 1 NC_009484.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1378276 5162403 Acry_1237 Acidiphilium cryptum JF-5 preprotein translocase subunit SecG YP_001234367.1 1377794 D 349163 CDS YP_001234368.1 148260241 5160162 1378344..1379975 1 NC_009484.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1379975 pyrG 5160162 pyrG Acidiphilium cryptum JF-5 CTP synthetase YP_001234368.1 1378344 D 349163 CDS YP_001234369.1 148260242 5160123 1379972..1380799 1 NC_009484.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1380799 5160123 Acry_1239 Acidiphilium cryptum JF-5 2-dehydro-3-deoxyphosphooctonate aldolase YP_001234369.1 1379972 D 349163 CDS YP_001234370.1 148260243 5160124 complement(1380833..1381450) 1 NC_009484.1 hypothetical protein 1381450 5160124 Acry_1240 Acidiphilium cryptum JF-5 hypothetical protein YP_001234370.1 1380833 R 349163 CDS YP_001234371.1 148260244 5160751 complement(1381443..1381778) 1 NC_009484.1 hypothetical protein 1381778 5160751 Acry_1241 Acidiphilium cryptum JF-5 hypothetical protein YP_001234371.1 1381443 R 349163 CDS YP_001234372.1 148260245 5159784 complement(1381844..1382617) 1 NC_009484.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1382617 5159784 Acry_1242 Acidiphilium cryptum JF-5 oxidoreductase FAD/NAD(P)-binding subunit YP_001234372.1 1381844 R 349163 CDS YP_001234373.1 148260246 5159785 1382808..1384976 1 NC_009484.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 1384976 5159785 Acry_1243 Acidiphilium cryptum JF-5 malate synthase G YP_001234373.1 1382808 D 349163 CDS YP_001234374.1 148260247 5160949 1385053..1387455 1 NC_009484.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 1387455 5160949 Acry_1244 Acidiphilium cryptum JF-5 diguanylate phosphodiesterase YP_001234374.1 1385053 D 349163 CDS YP_001234375.1 148260248 5162371 1387537..1388136 1 NC_009484.1 hypothetical protein 1388136 5162371 Acry_1245 Acidiphilium cryptum JF-5 hypothetical protein YP_001234375.1 1387537 D 349163 CDS YP_001234376.1 148260249 5162372 1388273..1388596 1 NC_009484.1 hypothetical protein 1388596 5162372 Acry_1246 Acidiphilium cryptum JF-5 hypothetical protein YP_001234376.1 1388273 D 349163 CDS YP_001234377.1 148260250 5161356 1388729..1388926 1 NC_009484.1 hypothetical protein 1388926 5161356 Acry_1247 Acidiphilium cryptum JF-5 hypothetical protein YP_001234377.1 1388729 D 349163 CDS YP_001234378.1 148260251 5161669 complement(1388995..1390677) 1 NC_009484.1 PFAM: Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 1390677 5161669 Acry_1248 Acidiphilium cryptum JF-5 polypeptide-transport-associated domain-containing protein YP_001234378.1 1388995 R 349163 CDS YP_001234379.1 148260252 5161670 complement(1390773..1391990) 1 NC_009484.1 hypothetical protein 1391990 5161670 Acry_1249 Acidiphilium cryptum JF-5 hypothetical protein YP_001234379.1 1390773 R 349163 CDS YP_001234380.1 148260253 5162061 1392509..1393075 1 NC_009484.1 hypothetical protein 1393075 5162061 Acry_1250 Acidiphilium cryptum JF-5 hypothetical protein YP_001234380.1 1392509 D 349163 CDS YP_001234381.1 148260254 5162062 complement(1393256..1393498) 1 NC_009484.1 hypothetical protein 1393498 5162062 Acry_1251 Acidiphilium cryptum JF-5 hypothetical protein YP_001234381.1 1393256 R 349163 CDS YP_001234382.1 148260255 5162063 1393498..1394838 1 NC_009484.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1394838 5162063 Acry_1252 Acidiphilium cryptum JF-5 aromatic hydrocarbon degradation membrane protein YP_001234382.1 1393498 D 349163 CDS YP_001234383.1 148260256 5162465 1394953..1396578 1 NC_009484.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 1396578 5162465 Acry_1253 Acidiphilium cryptum JF-5 glucose-methanol-choline oxidoreductase YP_001234383.1 1394953 D 349163 CDS YP_001234384.1 148260257 5162258 1396604..1398019 1 NC_009484.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 1398019 5162258 Acry_1254 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001234384.1 1396604 D 349163 CDS YP_001234385.1 148260258 5162259 complement(1398035..1398574) 1 NC_009484.1 hypothetical protein 1398574 5162259 Acry_1255 Acidiphilium cryptum JF-5 hypothetical protein YP_001234385.1 1398035 R 349163 CDS YP_001234386.1 148260259 5162020 complement(1398567..1400285) 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1400285 5162020 Acry_1256 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001234386.1 1398567 R 349163 CDS YP_001234387.1 148260260 5161941 complement(1400297..1401583) 1 NC_009484.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1401583 5161941 Acry_1257 Acidiphilium cryptum JF-5 acetyl-CoA acetyltransferase YP_001234387.1 1400297 R 349163 CDS YP_001234388.1 148260261 5161942 complement(1401595..1402437) 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; dehydratase 1402437 5161942 Acry_1258 Acidiphilium cryptum JF-5 dehydratase YP_001234388.1 1401595 R 349163 CDS YP_001234389.1 148260262 5162171 complement(1402443..1403933) 1 NC_009484.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1403933 fabG 5162171 fabG Acidiphilium cryptum JF-5 3-ketoacyl-ACP reductase YP_001234389.1 1402443 R 349163 CDS YP_001234390.1 148260263 5162472 complement(1403930..1406506) 1 NC_009484.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 1406506 fadE 5162472 fadE Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase YP_001234390.1 1403930 R 349163 CDS YP_001234391.1 148260264 5162473 complement(1406539..1407609) 1 NC_009484.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin 1407609 5162473 Acry_1261 Acidiphilium cryptum JF-5 ferredoxin YP_001234391.1 1406539 R 349163 CDS YP_001234392.1 148260265 5161776 complement(1407613..1408815) 1 NC_009484.1 PFAM: fatty acid desaturase; alkane 1-monooxygenase 1408815 5161776 Acry_1262 Acidiphilium cryptum JF-5 alkane 1-monooxygenase YP_001234392.1 1407613 R 349163 CDS YP_001234393.1 148260266 5161903 complement(1409168..1410481) 1 NC_009484.1 hypothetical protein 1410481 5161903 Acry_1263 Acidiphilium cryptum JF-5 hypothetical protein YP_001234393.1 1409168 R 349163 CDS YP_001234394.1 148260267 5161904 1410831..1411517 1 NC_009484.1 hypothetical protein 1411517 5161904 Acry_1264 Acidiphilium cryptum JF-5 hypothetical protein YP_001234394.1 1410831 D 349163 CDS YP_001234395.1 148260268 5161877 1411510..1412157 1 NC_009484.1 hypothetical protein 1412157 5161877 Acry_1265 Acidiphilium cryptum JF-5 hypothetical protein YP_001234395.1 1411510 D 349163 CDS YP_001234396.1 148260269 5161761 complement(1412161..1413315) 1 NC_009484.1 PFAM: protein of unknown function DUF453; hypothetical protein 1413315 5161761 Acry_1266 Acidiphilium cryptum JF-5 hypothetical protein YP_001234396.1 1412161 R 349163 CDS YP_001234397.1 148260270 5161762 complement(1413320..1414027) 1 NC_009484.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; GntR family transcriptional regulator 1414027 5161762 Acry_1267 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001234397.1 1413320 R 349163 CDS YP_001234398.1 148260271 5161785 1414124..1415491 1 NC_009484.1 PFAM: MmgE/PrpD family protein; MmgE/PrpD family protein 1415491 5161785 Acry_1268 Acidiphilium cryptum JF-5 MmgE/PrpD family protein YP_001234398.1 1414124 D 349163 CDS YP_001234399.1 148260272 5161725 1415552..1416952 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1416952 5161725 Acry_1269 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234399.1 1415552 D 349163 CDS YP_001234400.1 148260273 5161726 1416984..1418045 1 NC_009484.1 PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1418045 5161726 Acry_1270 Acidiphilium cryptum JF-5 3-isopropylmalate dehydrogenase YP_001234400.1 1416984 D 349163 CDS YP_001234401.1 148260274 5161709 complement(1418070..1419854) 1 NC_009484.1 PFAM: glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 1419854 5161709 Acry_1271 Acidiphilium cryptum JF-5 glycoside hydrolase 15-like protein YP_001234401.1 1418070 R 349163 CDS YP_001234402.1 148260275 5161615 complement(1419870..1421144) 1 NC_009484.1 TIGRFAM: ribose 5-phosphate isomerase; carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 1421144 5161615 Acry_1272 Acidiphilium cryptum JF-5 ribose 5-phosphate isomerase YP_001234402.1 1419870 R 349163 CDS YP_001234403.1 148260276 5161616 complement(1421159..1421896) 1 NC_009484.1 TIGRFAM: 6-phosphogluconolactonase; 6-phosphogluconolactonase 1421896 5161616 Acry_1273 Acidiphilium cryptum JF-5 6-phosphogluconolactonase YP_001234403.1 1421159 R 349163 CDS YP_001234404.1 148260277 5161634 complement(1421896..1422714) 1 NC_009484.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; cof family hydrolase 1422714 5161634 Acry_1274 Acidiphilium cryptum JF-5 cof family hydrolase YP_001234404.1 1421896 R 349163 CDS YP_001234405.1 148260278 5161618 complement(1422711..1424315) 1 NC_009484.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1424315 5161618 Acry_1275 Acidiphilium cryptum JF-5 glucose-6-phosphate 1-dehydrogenase YP_001234405.1 1422711 R 349163 CDS YP_001234406.1 148260279 5161619 complement(1424312..1425316) 1 NC_009484.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 1425316 5161619 Acry_1276 Acidiphilium cryptum JF-5 6-phosphogluconate dehydrogenase YP_001234406.1 1424312 R 349163 CDS YP_001234407.1 148260280 5161497 complement(1425436..1428267) 1 NC_009484.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 1428267 5161497 Acry_1277 Acidiphilium cryptum JF-5 bifunctional transaldolase/phosoglucose isomerase YP_001234407.1 1425436 R 349163 CDS YP_001234408.1 148260281 5161515 1428533..1430338 1 NC_009484.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1430338 5161515 Acry_1278 Acidiphilium cryptum JF-5 GTP-binding protein LepA YP_001234408.1 1428533 D 349163 CDS YP_001234409.1 148260282 5161516 1430344..1431699 1 NC_009484.1 PFAM: protein of unknown function DUF195; hypothetical protein 1431699 5161516 Acry_1279 Acidiphilium cryptum JF-5 hypothetical protein YP_001234409.1 1430344 D 349163 CDS YP_001234410.1 148260283 5161759 1431994..1432338 1 NC_009484.1 hypothetical protein 1432338 5161759 Acry_1280 Acidiphilium cryptum JF-5 hypothetical protein YP_001234410.1 1431994 D 349163 CDS YP_001234411.1 148260284 5161221 complement(1432340..1432981) 1 NC_009484.1 hypothetical protein 1432981 5161221 Acry_1281 Acidiphilium cryptum JF-5 hypothetical protein YP_001234411.1 1432340 R 349163 CDS YP_001234412.1 148260285 5161222 complement(1433134..1433745) 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 1433745 5161222 Acry_1282 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001234412.1 1433134 R 349163 CDS YP_001234413.1 148260286 5161403 complement(1434193..1434624) 1 NC_009484.1 PFAM: DoxX family protein; DoxX family protein 1434624 5161403 Acry_1283 Acidiphilium cryptum JF-5 DoxX family protein YP_001234413.1 1434193 R 349163 CDS YP_001234414.1 148260287 5161259 1434753..1435700 1 NC_009484.1 PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; LysR family transcriptional regulator 1435700 5161259 Acry_1284 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234414.1 1434753 D 349163 CDS YP_001234415.1 148260288 5161260 1435888..1436265 1 NC_009484.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1436265 5161260 Acry_1285 Acidiphilium cryptum JF-5 transposase IS3/IS911 family protein YP_001234415.1 1435888 D 349163 CDS YP_001234416.1 148260289 5161073 1436262..1436819 1 NC_009484.1 hypothetical protein 1436819 5161073 Acry_1286 Acidiphilium cryptum JF-5 hypothetical protein YP_001234416.1 1436262 D 349163 CDS YP_001234417.1 148260290 5161226 1437024..1437212 1 NC_009484.1 hypothetical protein 1437212 5161226 Acry_1287 Acidiphilium cryptum JF-5 hypothetical protein YP_001234417.1 1437024 D 349163 CDS YP_001234418.1 148260291 5161227 complement(1437294..1439069) 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 1439069 5161227 Acry_1288 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001234418.1 1437294 R 349163 CDS YP_001234419.1 148260292 5159746 1439139..1439381 1 NC_009484.1 hypothetical protein 1439381 5159746 Acry_1289 Acidiphilium cryptum JF-5 hypothetical protein YP_001234419.1 1439139 D 349163 CDS YP_001234420.1 148260293 5161024 1439579..1441486 1 NC_009484.1 hypothetical protein 1441486 5161024 Acry_1290 Acidiphilium cryptum JF-5 hypothetical protein YP_001234420.1 1439579 D 349163 CDS YP_001234421.1 148260294 5161025 1441483..1442298 1 NC_009484.1 hypothetical protein 1442298 5161025 Acry_1291 Acidiphilium cryptum JF-5 hypothetical protein YP_001234421.1 1441483 D 349163 CDS YP_001234422.1 148260295 5161011 1442302..1444230 1 NC_009484.1 PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; glycosyl transferase family protein 1444230 5161011 Acry_1292 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234422.1 1442302 D 349163 CDS YP_001234423.1 148260296 5161000 1444647..1445399 1 NC_009484.1 hypothetical protein 1445399 5161000 Acry_1293 Acidiphilium cryptum JF-5 hypothetical protein YP_001234423.1 1444647 D 349163 CDS YP_001234424.1 148260297 5161001 complement(1445553..1447712) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1447712 5161001 Acry_1294 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234424.1 1445553 R 349163 CDS YP_001234425.1 148260298 5160939 1448043..1448363 1 NC_009484.1 hypothetical protein 1448363 5160939 Acry_1295 Acidiphilium cryptum JF-5 hypothetical protein YP_001234425.1 1448043 D 349163 CDS YP_001234426.1 148260299 5161857 complement(1448420..1450204) 1 NC_009484.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ 1450204 5161857 Acry_1296 Acidiphilium cryptum JF-5 single-stranded-DNA-specific exonuclease RecJ YP_001234426.1 1448420 R 349163 CDS YP_001234427.1 148260300 5160948 complement(1450189..1451175) 1 NC_009484.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1451175 glpX 5160948 glpX Acidiphilium cryptum JF-5 fructose 1,6-bisphosphatase II YP_001234427.1 1450189 R 349163 CDS YP_001234428.1 148260301 5162337 complement(1451206..1452495) 1 NC_009484.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1452495 5162337 Acry_1298 Acidiphilium cryptum JF-5 homoserine dehydrogenase YP_001234428.1 1451206 R 349163 CDS YP_001234429.1 148260302 5160760 complement(1452492..1453703) 1 NC_009484.1 PFAM: aminotransferase, class I and II; aminotransferase 1453703 5160760 Acry_1299 Acidiphilium cryptum JF-5 aminotransferase YP_001234429.1 1452492 R 349163 CDS YP_001234430.1 148260303 5160761 complement(1453700..1454353) 1 NC_009484.1 hypothetical protein 1454353 5160761 Acry_1300 Acidiphilium cryptum JF-5 hypothetical protein YP_001234430.1 1453700 R 349163 CDS YP_001234431.1 148260304 5160714 1454416..1456215 1 NC_009484.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly(R)-hydroxyalkanoic acid synthase 1456215 5160714 Acry_1301 Acidiphilium cryptum JF-5 poly(R)-hydroxyalkanoic acid synthase YP_001234431.1 1454416 D 349163 CDS YP_001234432.1 148260305 5160737 1456212..1457294 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1457294 5160737 Acry_1302 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001234432.1 1456212 D 349163 CDS YP_001234433.1 148260306 5160738 1457308..1458603 1 NC_009484.1 hypothetical protein 1458603 5160738 Acry_1303 Acidiphilium cryptum JF-5 hypothetical protein YP_001234433.1 1457308 D 349163 CDS YP_001234434.1 148260307 5160529 1458600..1459562 1 NC_009484.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 1459562 5160529 Acry_1304 Acidiphilium cryptum JF-5 cobalamin synthesis protein, P47K YP_001234434.1 1458600 D 349163 CDS YP_001234435.1 148260308 5160279 1459559..1460605 1 NC_009484.1 SMART: WD-40 repeat protein; WD-40 repeat-containing protein 1460605 5160279 Acry_1305 Acidiphilium cryptum JF-5 WD-40 repeat-containing protein YP_001234435.1 1459559 D 349163 CDS YP_001234436.1 148260309 5160280 1460607..1461431 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 1461431 5160280 Acry_1306 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001234436.1 1460607 D 349163 CDS YP_001234437.1 148260310 5160496 complement(1461498..1463330) 1 NC_009484.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; GTP-binding protein TypA 1463330 5160496 Acry_1307 Acidiphilium cryptum JF-5 GTP-binding protein TypA YP_001234437.1 1461498 R 349163 CDS YP_001234438.1 148260311 5160503 complement(1463474..1463983) 1 NC_009484.1 hypothetical protein 1463983 5160503 Acry_1308 Acidiphilium cryptum JF-5 hypothetical protein YP_001234438.1 1463474 R 349163 CDS YP_001234439.1 148260312 5160504 1464003..1465430 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1465430 5160504 Acry_1309 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234439.1 1464003 D 349163 CDS YP_001234440.1 148260313 5160199 complement(1465441..1467309) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1467309 5160199 Acry_1310 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234440.1 1465441 R 349163 CDS YP_001234441.1 148260314 5160323 1467404..1467826 1 NC_009484.1 PFAM: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1467826 5160323 Acry_1311 Acidiphilium cryptum JF-5 nucleoside-diphosphate kinase YP_001234441.1 1467404 D 349163 CDS YP_001234442.1 148260315 5160324 complement(1467892..1468254) 1 NC_009484.1 hypothetical protein 1468254 5160324 Acry_1312 Acidiphilium cryptum JF-5 hypothetical protein YP_001234442.1 1467892 R 349163 CDS YP_001234443.1 148260316 5159772 1468422..1469462 1 NC_009484.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; rod shape-determining protein MreB 1469462 5159772 Acry_1313 Acidiphilium cryptum JF-5 rod shape-determining protein MreB YP_001234443.1 1468422 D 349163 CDS YP_001234444.1 148260317 5159834 1469509..1470387 1 NC_009484.1 PFAM: UspA domain protein; UspA domain-containing protein 1470387 5159834 Acry_1314 Acidiphilium cryptum JF-5 UspA domain-containing protein YP_001234444.1 1469509 D 349163 CDS YP_001234445.1 148260318 5159835 1470400..1470849 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1470849 5159835 Acry_1315 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001234445.1 1470400 D 349163 CDS YP_001234446.1 148260319 5159719 1470930..1471637 1 NC_009484.1 PFAM: Pirin domain protein; pirin domain-containing protein 1471637 5159719 Acry_1316 Acidiphilium cryptum JF-5 pirin domain-containing protein YP_001234446.1 1470930 D 349163 CDS YP_001234447.1 148260320 5159825 1471857..1473383 1 NC_009484.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1473383 5159825 Acry_1317 Acidiphilium cryptum JF-5 protease Do YP_001234447.1 1471857 D 349163 CDS YP_001234448.1 148260321 5159826 1473540..1474466 1 NC_009484.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1474466 5159826 Acry_1318 Acidiphilium cryptum JF-5 sulfate adenylyltransferase subunit 2 YP_001234448.1 1473540 D 349163 CDS YP_001234449.1 148260322 5159765 1474466..1476331 1 NC_009484.1 TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit 1476331 5159765 Acry_1319 Acidiphilium cryptum JF-5 sulfate adenylyltransferase, large subunit YP_001234449.1 1474466 D 349163 CDS YP_001234450.1 148260323 5159565 1476406..1477515 1 NC_009484.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1477515 5159565 Acry_1320 Acidiphilium cryptum JF-5 chorismate synthase YP_001234450.1 1476406 D 349163 CDS YP_001234451.1 148260324 5159566 complement(1477688..1478782) 1 NC_009484.1 hypothetical protein 1478782 5159566 Acry_1321 Acidiphilium cryptum JF-5 hypothetical protein YP_001234451.1 1477688 R 349163 CDS YP_001234452.1 148260325 5159687 1478850..1480106 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1480106 5159687 Acry_1322 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001234452.1 1478850 D 349163 CDS YP_001234453.1 148260326 5159467 1480246..1480677 1 NC_009484.1 PFAM: protein of unknown function DUF336; hypothetical protein 1480677 5159467 Acry_1323 Acidiphilium cryptum JF-5 hypothetical protein YP_001234453.1 1480246 D 349163 CDS YP_001234454.1 148260327 5159468 complement(1480764..1482173) 1 NC_009484.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; 2-alkenal reductase 1482173 5159468 Acry_1324 Acidiphilium cryptum JF-5 2-alkenal reductase YP_001234454.1 1480764 R 349163 CDS YP_001234455.1 148260328 5159541 complement(1482178..1483023) 1 NC_009484.1 PFAM: glutamyl-tRNA synthetase, class Ic; glutamyl-tRNA synthetase 1483023 5159541 Acry_1325 Acidiphilium cryptum JF-5 glutamyl-tRNA synthetase YP_001234455.1 1482178 R 349163 CDS YP_001234456.1 148260329 5160073 1483073..1483741 1 NC_009484.1 PFAM: phospholipase/Carboxylesterase; phospholipase/carboxylesterase 1483741 5160073 Acry_1326 Acidiphilium cryptum JF-5 phospholipase/carboxylesterase YP_001234456.1 1483073 D 349163 CDS YP_001234457.1 148260330 5160074 1483889..1484449 1 NC_009484.1 PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 1484449 5160074 Acry_1327 Acidiphilium cryptum JF-5 HNH endonuclease YP_001234457.1 1483889 D 349163 CDS YP_001234458.1 148260331 5160175 1484503..1485717 1 NC_009484.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1485717 5160175 Acry_1328 Acidiphilium cryptum JF-5 tryptophan synthase subunit beta YP_001234458.1 1484503 D 349163 CDS YP_001234459.1 148260332 5159557 1485714..1486544 1 NC_009484.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1486544 trpA 5159557 trpA Acidiphilium cryptum JF-5 tryptophan synthase subunit alpha YP_001234459.1 1485714 D 349163 CDS YP_001234460.1 148260333 5159558 complement(1486669..1487934) 1 NC_009484.1 TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase 1487934 5159558 Acry_1330 Acidiphilium cryptum JF-5 phosphoribosylamine--glycine ligase YP_001234460.1 1486669 R 349163 CDS YP_001234461.1 148260334 5159924 1487989..1489377 1 NC_009484.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1489377 5159924 Acry_1331 Acidiphilium cryptum JF-5 exodeoxyribonuclease VII large subunit YP_001234461.1 1487989 D 349163 CDS YP_001234462.1 148260335 5161112 complement(1489390..1490094) 1 NC_009484.1 hypothetical protein 1490094 5161112 Acry_1332 Acidiphilium cryptum JF-5 hypothetical protein YP_001234462.1 1489390 R 349163 CDS YP_001234463.1 148260336 5161113 complement(1490091..1490666) 1 NC_009484.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1490666 5161113 Acry_1333 Acidiphilium cryptum JF-5 ECF subfamily RNA polymerase sigma-24 factor YP_001234463.1 1490091 R 349163 CDS YP_001234464.1 148260337 5161413 1491134..1491586 1 NC_009484.1 PFAM: ferric-uptake regulator; ferric uptake regulator family protein 1491586 5161413 Acry_1334 Acidiphilium cryptum JF-5 ferric uptake regulator family protein YP_001234464.1 1491134 D 349163 CDS YP_001234465.1 148260338 5162301 1491583..1492395 1 NC_009484.1 putative hemolysin-like protein 1492395 5162301 Acry_1335 Acidiphilium cryptum JF-5 putative hemolysin-like protein YP_001234465.1 1491583 D 349163 CDS YP_001234466.1 148260339 5162302 1492456..1492965 1 NC_009484.1 PFAM: protein of unknown function DUF1321; hypothetical protein 1492965 5162302 Acry_1336 Acidiphilium cryptum JF-5 hypothetical protein YP_001234466.1 1492456 D 349163 CDS YP_001234467.1 148260340 5161754 1492981..1494627 1 NC_009484.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 1494627 5161754 Acry_1337 Acidiphilium cryptum JF-5 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta YP_001234467.1 1492981 D 349163 CDS YP_001234468.1 148260341 5161732 1494635..1495030 1 NC_009484.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1495030 5161732 Acry_1338 Acidiphilium cryptum JF-5 glyoxalase/bleomycin resistance protein/dioxygenase YP_001234468.1 1494635 D 349163 CDS YP_001234469.1 148260342 5161733 1495027..1496064 1 NC_009484.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1496064 queA 5161733 queA Acidiphilium cryptum JF-5 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001234469.1 1495027 D 349163 CDS YP_001234470.1 148260343 5161561 1496061..1497191 1 NC_009484.1 TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1497191 5161561 Acry_1340 Acidiphilium cryptum JF-5 queuine tRNA-ribosyltransferase YP_001234470.1 1496061 D 349163 CDS YP_001234471.1 148260344 5160166 1497172..1497636 1 NC_009484.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1497636 5160166 Acry_1341 Acidiphilium cryptum JF-5 7-cyano-7-deazaguanine reductase YP_001234471.1 1497172 D 349163 CDS YP_001234472.1 148260345 5160167 1497629..1498690 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; hypothetical protein 1498690 5160167 Acry_1342 Acidiphilium cryptum JF-5 hypothetical protein YP_001234472.1 1497629 D 349163 CDS YP_001234473.1 148260346 5159696 1498776..1499234 1 NC_009484.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 1499234 5159696 Acry_1343 Acidiphilium cryptum JF-5 large conductance mechanosensitive channel protein YP_001234473.1 1498776 D 349163 CDS YP_001234474.1 148260347 5159580 1499429..1500082 1 NC_009484.1 hypothetical protein 1500082 5159580 Acry_1344 Acidiphilium cryptum JF-5 hypothetical protein YP_001234474.1 1499429 D 349163 CDS YP_001234475.1 148260348 5159581 complement(1500222..1500926) 1 NC_009484.1 PFAM: LrgB family protein; LrgB family protein 1500926 5159581 Acry_1345 Acidiphilium cryptum JF-5 LrgB family protein YP_001234475.1 1500222 R 349163 CDS YP_001234476.1 148260349 5159591 complement(1500919..1501356) 1 NC_009484.1 PFAM: LrgA family protein; LrgA family protein 1501356 5159591 Acry_1346 Acidiphilium cryptum JF-5 LrgA family protein YP_001234476.1 1500919 R 349163 CDS YP_001234477.1 148260350 5160541 1501461..1502390 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1502390 5160541 Acry_1347 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234477.1 1501461 D 349163 CDS YP_001234478.1 148260351 5160542 1502467..1503849 1 NC_009484.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; UDP-glucose 6-dehydrogenase 1503849 5160542 Acry_1348 Acidiphilium cryptum JF-5 UDP-glucose 6-dehydrogenase YP_001234478.1 1502467 D 349163 CDS YP_001234479.1 148260352 5160401 1503842..1505587 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1505587 5160401 Acry_1349 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001234479.1 1503842 D 349163 CDS YP_001234480.1 148260353 5162369 1505612..1508752 1 NC_009484.1 PFAM: Tetratricopeptide TPR_4; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 1508752 5162369 Acry_1350 Acidiphilium cryptum JF-5 type 12 methyltransferase YP_001234480.1 1505612 D 349163 CDS YP_001234481.1 148260354 5162370 1508815..1509795 1 NC_009484.1 lipopolysaccharide biosynthesis protein-like protein 1509795 5162370 Acry_1351 Acidiphilium cryptum JF-5 lipopolysaccharide biosynthesis protein-like protein YP_001234481.1 1508815 D 349163 CDS YP_001234482.1 148260355 5161295 1509792..1510604 1 NC_009484.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1510604 5161295 Acry_1352 Acidiphilium cryptum JF-5 phospholipid/glycerol acyltransferase YP_001234482.1 1509792 D 349163 CDS YP_001234483.1 148260356 5161489 1510745..1512097 1 NC_009484.1 TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; RNA modification protein 1512097 5161489 Acry_1353 Acidiphilium cryptum JF-5 RNA modification protein YP_001234483.1 1510745 D 349163 CDS YP_001234484.1 148260357 5161490 1512094..1513095 1 NC_009484.1 PFAM: PhoH family protein; KH, type 1, domain protein; PhoH family protein 1513095 5161490 Acry_1354 Acidiphilium cryptum JF-5 PhoH family protein YP_001234484.1 1512094 D 349163 CDS YP_001234485.1 148260358 5160368 1513092..1513544 1 NC_009484.1 PFAM: protein of unknown function UPF0054; hypothetical protein 1513544 5160368 Acry_1355 Acidiphilium cryptum JF-5 hypothetical protein YP_001234485.1 1513092 D 349163 CDS YP_001234486.1 148260359 5161610 1513526..1514395 1 NC_009484.1 PFAM: CBS domain containing protein; transporter-associated region; hypothetical protein 1514395 5161610 Acry_1356 Acidiphilium cryptum JF-5 hypothetical protein YP_001234486.1 1513526 D 349163 CDS YP_001234487.1 148260360 5161611 1514520..1514735 1 NC_009484.1 hypothetical protein 1514735 5161611 Acry_1357 Acidiphilium cryptum JF-5 hypothetical protein YP_001234487.1 1514520 D 349163 CDS YP_001234488.1 148260361 5161586 complement(1514858..1515682) 1 NC_009484.1 hypothetical protein 1515682 5161586 Acry_1358 Acidiphilium cryptum JF-5 hypothetical protein YP_001234488.1 1514858 R 349163 CDS YP_001234489.1 148260362 5160643 complement(1515654..1515965) 1 NC_009484.1 PFAM: protein of unknown function DUF1330; hypothetical protein 1515965 5160643 Acry_1359 Acidiphilium cryptum JF-5 hypothetical protein YP_001234489.1 1515654 R 349163 CDS YP_001234490.1 148260363 5160644 complement(1516009..1516626) 1 NC_009484.1 hypothetical protein 1516626 5160644 Acry_1360 Acidiphilium cryptum JF-5 hypothetical protein YP_001234490.1 1516009 R 349163 CDS YP_001234491.1 148260364 5162110 1516818..1517438 1 NC_009484.1 hypothetical protein 1517438 5162110 Acry_1361 Acidiphilium cryptum JF-5 hypothetical protein YP_001234491.1 1516818 D 349163 CDS YP_001234492.1 148260365 5159506 complement(1517445..1519298) 1 NC_009484.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1519298 5159506 Acry_1362 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234492.1 1517445 R 349163 CDS YP_001234493.1 148260366 5159507 1519521..1520570 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1520570 5159507 Acry_1363 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001234493.1 1519521 D 349163 CDS YP_001234494.1 148260367 5159579 1520849..1521685 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1521685 5159579 Acry_1364 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234494.1 1520849 D 349163 CDS YP_001234495.1 148260368 5159853 1521682..1522731 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1522731 5159853 Acry_1365 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234495.1 1521682 D 349163 CDS YP_001234496.1 148260369 5159854 1522776..1523765 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1523765 5159854 Acry_1366 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001234496.1 1522776 D 349163 CDS YP_001234497.1 148260370 5159949 1523874..1525385 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; Ada metal-binding domain-containing protein 1525385 5159949 Acry_1367 Acidiphilium cryptum JF-5 Ada metal-binding domain-containing protein YP_001234497.1 1523874 D 349163 CDS YP_001234498.1 148260371 5159606 1525375..1525932 1 NC_009484.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1525932 5159606 Acry_1368 Acidiphilium cryptum JF-5 methylated-DNA--protein-cysteine methyltransferase YP_001234498.1 1525375 D 349163 CDS YP_001234499.1 148260372 5159607 1525969..1527162 1 NC_009484.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; serine--glyoxylate transaminase 1527162 5159607 Acry_1369 Acidiphilium cryptum JF-5 serine--glyoxylate transaminase YP_001234499.1 1525969 D 349163 CDS YP_001234500.1 148260373 5159475 1527322..1527783 1 NC_009484.1 hypothetical protein 1527783 5159475 Acry_1370 Acidiphilium cryptum JF-5 hypothetical protein YP_001234500.1 1527322 D 349163 CDS YP_001234501.1 148260374 5159903 1527803..1528588 1 NC_009484.1 hypothetical protein 1528588 5159903 Acry_1371 Acidiphilium cryptum JF-5 hypothetical protein YP_001234501.1 1527803 D 349163 CDS YP_001234502.1 148260375 5159904 1528626..1528988 1 NC_009484.1 hypothetical protein 1528988 5159904 Acry_1372 Acidiphilium cryptum JF-5 hypothetical protein YP_001234502.1 1528626 D 349163 CDS YP_001234503.1 148260376 5160090 complement(1528966..1529193) 1 NC_009484.1 hypothetical protein 1529193 5160090 Acry_1373 Acidiphilium cryptum JF-5 hypothetical protein YP_001234503.1 1528966 R 349163 CDS YP_001234504.1 148260377 5159563 1529728..1530204 1 NC_009484.1 hypothetical protein 1530204 5159563 Acry_1374 Acidiphilium cryptum JF-5 hypothetical protein YP_001234504.1 1529728 D 349163 CDS YP_001234505.1 148260378 5159564 1530323..1532257 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 1532257 5159564 Acry_1375 Acidiphilium cryptum JF-5 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001234505.1 1530323 D 349163 CDS YP_001234506.1 148260379 5159575 complement(1532301..1533935) 1 NC_009484.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL 1533935 groEL 5159575 groEL Acidiphilium cryptum JF-5 chaperonin GroEL YP_001234506.1 1532301 R 349163 CDS YP_001234507.1 148260380 5160215 complement(1533980..1535002) 1 NC_009484.1 PFAM: amidohydrolase 2; amidohydrolase 2 1535002 5160215 Acry_1377 Acidiphilium cryptum JF-5 amidohydrolase 2 YP_001234507.1 1533980 R 349163 CDS YP_001234508.1 148260381 5160216 complement(1535080..1535448) 1 NC_009484.1 PFAM: monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM 1535448 5160216 Acry_1378 Acidiphilium cryptum JF-5 monooxygenase component MmoB/DmpM YP_001234508.1 1535080 R 349163 CDS YP_001234509.1 148260382 5159471 complement(1535472..1536527) 1 NC_009484.1 PFAM: methane/phenol/toluene hydroxylase; methane/phenol/toluene hydroxylase 1536527 5159471 Acry_1379 Acidiphilium cryptum JF-5 methane/phenol/toluene hydroxylase YP_001234509.1 1535472 R 349163 CDS YP_001234510.1 148260383 5159779 complement(1536570..1537661) 1 NC_009484.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1537661 5159779 Acry_1380 Acidiphilium cryptum JF-5 oxidoreductase FAD/NAD(P)-binding subunit YP_001234510.1 1536570 R 349163 CDS YP_001234511.1 148260384 5159780 complement(1537745..1539412) 1 NC_009484.1 PFAM: methane/phenol/toluene hydroxylase; methane monooxygenase 1539412 5159780 Acry_1381 Acidiphilium cryptum JF-5 methane monooxygenase YP_001234511.1 1537745 R 349163 CDS YP_001234512.1 148260385 5160039 1539911..1540381 1 NC_009484.1 hypothetical protein 1540381 5160039 Acry_1382 Acidiphilium cryptum JF-5 hypothetical protein YP_001234512.1 1539911 D 349163 CDS YP_001234513.1 148260386 5159473 1540378..1540686 1 NC_009484.1 hypothetical protein 1540686 5159473 Acry_1383 Acidiphilium cryptum JF-5 hypothetical protein YP_001234513.1 1540378 D 349163 CDS YP_001234514.1 148260387 5159474 1540703..1541833 1 NC_009484.1 hypothetical protein 1541833 5159474 Acry_1384 Acidiphilium cryptum JF-5 hypothetical protein YP_001234514.1 1540703 D 349163 CDS YP_001234515.1 148260388 5160437 1541860..1542036 1 NC_009484.1 hypothetical protein 1542036 5160437 Acry_1385 Acidiphilium cryptum JF-5 hypothetical protein YP_001234515.1 1541860 D 349163 CDS YP_001234516.1 148260389 5160500 complement(1542044..1542307) 1 NC_009484.1 related to arylsulfate sulfotransferase involved in siderophore biosynthesis-like protein; hypothetical protein 1542307 5160500 Acry_1386 Acidiphilium cryptum JF-5 hypothetical protein YP_001234516.1 1542044 R 349163 CDS YP_001234517.1 148260390 5160501 1542598..1542993 1 NC_009484.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1542993 5160501 Acry_1387 Acidiphilium cryptum JF-5 glyoxalase/bleomycin resistance protein/dioxygenase YP_001234517.1 1542598 D 349163 CDS YP_001234518.1 148260391 5160509 complement(1543009..1543212) 1 NC_009484.1 hypothetical protein 1543212 5160509 Acry_1388 Acidiphilium cryptum JF-5 hypothetical protein YP_001234518.1 1543009 R 349163 CDS YP_001234519.1 148260392 5159875 complement(1543342..1543788) 1 NC_009484.1 PFAM: Thioredoxin domain; thioredoxin domain-containing protein 1543788 5159875 Acry_1389 Acidiphilium cryptum JF-5 thioredoxin domain-containing protein YP_001234519.1 1543342 R 349163 CDS YP_001234520.1 148260393 5159876 complement(1543781..1545088) 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1545088 5159876 Acry_1390 Acidiphilium cryptum JF-5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001234520.1 1543781 R 349163 CDS YP_001234521.1 148260394 5161777 1545646..1546008 1 NC_009484.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 1546008 5161777 Acry_1392 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001234521.1 1545646 D 349163 CDS YP_001234522.1 148260395 5160527 1546049..1547059 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1547059 5160527 Acry_1393 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001234522.1 1546049 D 349163 CDS YP_001234523.1 148260396 5160528 1547056..1550325 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 1550325 5160528 Acry_1394 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001234523.1 1547056 D 349163 CDS YP_001234524.1 148260397 5160797 1550457..1550711 1 NC_009484.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1550711 5160797 Acry_1395 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001234524.1 1550457 D 349163 CDS YP_001234525.1 148260398 5160665 1550708..1552723 1 NC_009484.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); hydrogenase 4 subunit B 1552723 5160665 Acry_1396 Acidiphilium cryptum JF-5 hydrogenase 4 subunit B YP_001234525.1 1550708 D 349163 CDS YP_001234526.1 148260399 5160666 1552714..1553670 1 NC_009484.1 formate hydrogenlyase subunit 4-like protein 1553670 5160666 Acry_1397 Acidiphilium cryptum JF-5 formate hydrogenlyase subunit 4-like protein YP_001234526.1 1552714 D 349163 CDS YP_001234527.1 148260400 5160251 1553667..1554356 1 NC_009484.1 hydrogenase 4 membrane component (E)-like protein 1554356 5160251 Acry_1398 Acidiphilium cryptum JF-5 hydrogenase 4 membrane component (E)-like protein YP_001234527.1 1553667 D 349163 CDS YP_001234528.1 148260401 5160457 1554353..1555801 1 NC_009484.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); hydrogenase 4 subunit F 1555801 5160457 Acry_1399 Acidiphilium cryptum JF-5 hydrogenase 4 subunit F YP_001234528.1 1554353 D 349163 CDS YP_001234529.1 148260402 5160458 1555764..1557212 1 NC_009484.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH-ubiquinone oxidoreductase subunit 49kDa 1557212 5160458 Acry_1400 Acidiphilium cryptum JF-5 NADH-ubiquinone oxidoreductase subunit 49kDa YP_001234529.1 1555764 D 349163 CDS YP_001234530.1 148260403 5160497 1557212..1557715 1 NC_009484.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 1557715 5160497 Acry_1401 Acidiphilium cryptum JF-5 NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001234530.1 1557212 D 349163 CDS YP_001234531.1 148260404 5160781 complement(1557743..1558291) 1 NC_009484.1 PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein 1558291 5160781 Acry_1402 Acidiphilium cryptum JF-5 Ferritin, Dps family protein YP_001234531.1 1557743 R 349163 CDS YP_001234532.1 148260405 5160782 complement(1558361..1559134) 1 NC_009484.1 PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1559134 5160782 Acry_1403 Acidiphilium cryptum JF-5 tRNA/rRNA methyltransferase SpoU YP_001234532.1 1558361 R 349163 CDS YP_001234533.1 148260406 5160514 complement(1559131..1560480) 1 NC_009484.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1560480 cysS 5160514 cysS Acidiphilium cryptum JF-5 cysteinyl-tRNA synthetase YP_001234533.1 1559131 R 349163 CDS YP_001234534.1 148260407 5160298 1560608..1561858 1 NC_009484.1 PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 1561858 5160298 Acry_1405 Acidiphilium cryptum JF-5 natural resistance-associated macrophage protein YP_001234534.1 1560608 D 349163 CDS YP_001234535.1 148260408 5160299 1561929..1563212 1 NC_009484.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 1563212 5160299 Acry_1406 Acidiphilium cryptum JF-5 acetylornithine deacetylase YP_001234535.1 1561929 D 349163 CDS YP_001234536.1 148260409 5159740 1563238..1564659 1 NC_009484.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1564659 5159740 Acry_1407 Acidiphilium cryptum JF-5 amidase YP_001234536.1 1563238 D 349163 CDS YP_001234537.1 148260410 5160992 1564793..1565137 1 NC_009484.1 hypothetical protein 1565137 5160992 Acry_1408 Acidiphilium cryptum JF-5 hypothetical protein YP_001234537.1 1564793 D 349163 CDS YP_001234538.1 148260411 5160993 complement(1565168..1566487) 1 NC_009484.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1566487 hslU 5160993 hslU Acidiphilium cryptum JF-5 ATP-dependent protease ATP-binding subunit HslU YP_001234538.1 1565168 R 349163 CDS YP_001234539.1 148260412 5162348 complement(1566484..1567032) 1 NC_009484.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1567032 5162348 Acry_1410 Acidiphilium cryptum JF-5 ATP-dependent protease peptidase subunit YP_001234539.1 1566484 R 349163 CDS YP_001234540.1 148260413 5160873 1567173..1567610 1 NC_009484.1 hypothetical protein 1567610 5160873 Acry_1411 Acidiphilium cryptum JF-5 hypothetical protein YP_001234540.1 1567173 D 349163 CDS YP_001234541.1 148260414 5160874 1567689..1569086 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1569086 5160874 Acry_1412 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234541.1 1567689 D 349163 CDS YP_001234542.1 148260415 5160976 1569146..1569736 1 NC_009484.1 PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1569736 5160976 Acry_1413 Acidiphilium cryptum JF-5 imidazoleglycerol-phosphate dehydratase YP_001234542.1 1569146 D 349163 CDS YP_001234543.1 148260416 5161052 1569733..1570368 1 NC_009484.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1570368 hisH 5161052 hisH Acidiphilium cryptum JF-5 imidazole glycerol phosphate synthase subunit HisH YP_001234543.1 1569733 D 349163 CDS YP_001234544.1 148260417 5161053 1570365..1570925 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1570925 5161053 Acry_1415 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001234544.1 1570365 D 349163 CDS YP_001234545.1 148260418 5161114 1570927..1571667 1 NC_009484.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1571667 5161114 Acry_1416 Acidiphilium cryptum JF-5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001234545.1 1570927 D 349163 CDS YP_001234546.1 148260419 5161219 1571661..1572425 1 NC_009484.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1572425 5161219 Acry_1417 Acidiphilium cryptum JF-5 imidazole glycerol phosphate synthase subunit HisF YP_001234546.1 1571661 D 349163 CDS YP_001234547.1 148260420 5161220 1572527..1572928 1 NC_009484.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 1572928 hisE 5161220 hisE Acidiphilium cryptum JF-5 phosphoribosyl-ATP pyrophosphatase YP_001234547.1 1572527 D 349163 CDS YP_001234548.1 148260421 5161202 1573133..1575364 1 NC_009484.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1575364 5161202 Acry_1419 Acidiphilium cryptum JF-5 N-acetylglucosamine-6-phosphate deacetylase YP_001234548.1 1573133 D 349163 CDS YP_001234549.1 148260422 5161172 1575409..1576695 1 NC_009484.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1576695 5161172 Acry_1420 Acidiphilium cryptum JF-5 iron-containing alcohol dehydrogenase YP_001234549.1 1575409 D 349163 CDS YP_001234550.1 148260423 5161173 1576723..1577511 1 NC_009484.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1577511 5161173 Acry_1421 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001234550.1 1576723 D 349163 CDS YP_001234551.1 148260424 5161305 complement(1577591..1578352) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1578352 5161305 Acry_1422 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234551.1 1577591 R 349163 CDS YP_001234552.1 148260425 5162321 complement(1578354..1579376) 1 NC_009484.1 PFAM: Acetamidase/Formamidase; acetamidase/formamidase 1579376 5162321 Acry_1423 Acidiphilium cryptum JF-5 acetamidase/formamidase YP_001234552.1 1578354 R 349163 CDS YP_001234553.1 148260426 5162322 1579532..1580308 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1580308 5162322 Acry_1424 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234553.1 1579532 D 349163 CDS YP_001234554.1 148260427 5161278 1580328..1581038 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1581038 5161278 Acry_1425 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234554.1 1580328 D 349163 CDS YP_001234555.1 148260428 5161369 1581123..1582757 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1582757 5161369 Acry_1426 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001234555.1 1581123 D 349163 CDS YP_001234556.1 148260429 5161370 complement(1582774..1587534) 1 NC_009484.1 PFAM: NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase 1587534 5161370 Acry_1427 Acidiphilium cryptum JF-5 NAD-glutamate dehydrogenase YP_001234556.1 1582774 R 349163 CDS YP_001234557.1 148260430 5161243 1587853..1589754 1 NC_009484.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1589754 5161243 Acry_1428 Acidiphilium cryptum JF-5 ATP-dependent metalloprotease FtsH YP_001234557.1 1587853 D 349163 CDS YP_001234558.1 148260431 5161520 complement(1589709..1590323) 1 NC_009484.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1590323 5161520 Acry_1429 Acidiphilium cryptum JF-5 endonuclease/exonuclease/phosphatase YP_001234558.1 1589709 R 349163 CDS YP_001234559.1 148260432 5161521 1590449..1591852 1 NC_009484.1 PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 1591852 5161521 Acry_1430 Acidiphilium cryptum JF-5 phospholipase D/transphosphatidylase YP_001234559.1 1590449 D 349163 CDS YP_001234560.1 148260433 5161491 complement(1591843..1592694) 1 NC_009484.1 esterase/lipase-like protein 1592694 5161491 Acry_1431 Acidiphilium cryptum JF-5 esterase/lipase-like protein YP_001234560.1 1591843 R 349163 CDS YP_001234561.1 148260434 5161509 complement(1592719..1593753) 1 NC_009484.1 PFAM: Polyprenyl synthetase; polyprenyl synthetase 1593753 5161509 Acry_1432 Acidiphilium cryptum JF-5 polyprenyl synthetase YP_001234561.1 1592719 R 349163 CDS YP_001234562.1 148260435 5161778 1594050..1594769 1 NC_009484.1 O-methyltransferase-like protein 1594769 5161778 Acry_1434 Acidiphilium cryptum JF-5 O-methyltransferase-like protein YP_001234562.1 1594050 D 349163 CDS YP_001234563.1 148260436 5161612 complement(1594778..1595245) 1 NC_009484.1 hypothetical protein 1595245 5161612 Acry_1435 Acidiphilium cryptum JF-5 hypothetical protein YP_001234563.1 1594778 R 349163 CDS YP_001234564.1 148260437 5161545 1595471..1596964 1 NC_009484.1 PFAM: acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase 1596964 5161545 Acry_1436 Acidiphilium cryptum JF-5 acetyl-CoA hydrolase YP_001234564.1 1595471 D 349163 CDS YP_001234565.1 148260438 5161546 complement(1597010..1598134) 1 NC_009484.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1598134 5161546 Acry_1437 Acidiphilium cryptum JF-5 DNA polymerase III subunit beta YP_001234565.1 1597010 R 349163 CDS YP_001234566.1 148260439 5161353 1598333..1600066 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1600066 5161353 Acry_1438 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001234566.1 1598333 D 349163 CDS YP_001234567.1 148260440 5161660 1600076..1601395 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1601395 5161660 Acry_1439 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234567.1 1600076 D 349163 CDS YP_001234568.1 148260441 5161661 1601465..1602913 1 NC_009484.1 PFAM: fumarate lyase; fumarate lyase 1602913 5161661 Acry_1440 Acidiphilium cryptum JF-5 fumarate lyase YP_001234568.1 1601465 D 349163 CDS YP_001234569.1 148260442 5161753 complement(1602832..1603800) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1603800 5161753 Acry_1441 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234569.1 1602832 R 349163 CDS YP_001234570.1 148260443 5161800 1603866..1604324 1 NC_009484.1 PFAM: DoxX family protein; DoxX family protein 1604324 5161800 Acry_1442 Acidiphilium cryptum JF-5 DoxX family protein YP_001234570.1 1603866 D 349163 CDS YP_001234571.1 148260444 5161801 1604324..1605106 1 NC_009484.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 1605106 5161801 Acry_1443 Acidiphilium cryptum JF-5 extradiol ring-cleavage dioxygenase III subunit B YP_001234571.1 1604324 D 349163 CDS YP_001234572.1 148260445 5161831 complement(1605082..1606323) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1606323 5161831 Acry_1444 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234572.1 1605082 R 349163 CDS YP_001234573.1 148260446 5161882 complement(1606353..1607882) 1 NC_009484.1 PFAM: Na+/solute symporter; Na+/solute symporter 1607882 5161882 Acry_1445 Acidiphilium cryptum JF-5 Na+/solute symporter YP_001234573.1 1606353 R 349163 CDS YP_001234574.1 148260447 5161883 complement(1607894..1608100) 1 NC_009484.1 hypothetical protein 1608100 5161883 Acry_1446 Acidiphilium cryptum JF-5 hypothetical protein YP_001234574.1 1607894 R 349163 CDS YP_001234575.1 148260448 5160206 complement(1608185..1608766) 1 NC_009484.1 PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase 1608766 5160206 Acry_1447 Acidiphilium cryptum JF-5 guanylate kinase YP_001234575.1 1608185 R 349163 CDS YP_001234576.1 148260449 5162435 complement(1608759..1609667) 1 NC_009484.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; hypothetical protein 1609667 5162435 Acry_1448 Acidiphilium cryptum JF-5 hypothetical protein YP_001234576.1 1608759 R 349163 CDS YP_001234577.1 148260450 5162436 complement(1609664..1610746) 1 NC_009484.1 PFAM: DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 1610746 5162436 Acry_1449 Acidiphilium cryptum JF-5 DNA methylase N-4/N-6 domain-containing protein YP_001234577.1 1609664 R 349163 CDS YP_001234578.1 148260451 5162229 1610890..1611660 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1611660 5162229 Acry_1450 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001234578.1 1610890 D 349163 CDS YP_001234579.1 148260452 5161852 complement(1612238..1613257) 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1613257 5161852 Acry_1452 Acidiphilium cryptum JF-5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001234579.1 1612238 R 349163 CDS YP_001234580.1 148260453 5162182 1613327..1613776 1 NC_009484.1 PFAM: protein of unknown function UPF0079; hypothetical protein 1613776 5162182 Acry_1453 Acidiphilium cryptum JF-5 hypothetical protein YP_001234580.1 1613327 D 349163 CDS YP_001234581.1 148260454 5162175 1613773..1616652 1 NC_009484.1 hypothetical protein 1616652 5162175 Acry_1454 Acidiphilium cryptum JF-5 hypothetical protein YP_001234581.1 1613773 D 349163 CDS YP_001234582.1 148260455 5162179 1616649..1620122 1 NC_009484.1 TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; UvrD-like DNA helicase, C terminal 1620122 5162179 Acry_1455 Acidiphilium cryptum JF-5 UvrD-like DNA helicase, C terminal YP_001234582.1 1616649 D 349163 CDS YP_001234583.1 148260456 5162180 1620180..1620506 1 NC_009484.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1620506 5162180 Acry_1456 Acidiphilium cryptum JF-5 thioredoxin YP_001234583.1 1620180 D 349163 CDS YP_001234584.1 148260457 5162157 1620512..1620910 1 NC_009484.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1620910 5162157 Acry_1457 Acidiphilium cryptum JF-5 thioesterase superfamily protein YP_001234584.1 1620512 D 349163 CDS YP_001234585.1 148260458 5162420 complement(1620912..1622336) 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1622336 5162420 Acry_1458 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234585.1 1620912 R 349163 CDS YP_001234586.1 148260459 5162421 complement(1622344..1623396) 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 1623396 5162421 Acry_1459 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001234586.1 1622344 R 349163 CDS YP_001234587.1 148260460 5162007 1623663..1624334 1 NC_009484.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1624334 5162007 Acry_1460 Acidiphilium cryptum JF-5 MotA/TolQ/ExbB proton channel YP_001234587.1 1623663 D 349163 CDS YP_001234588.1 148260461 5161953 1624339..1624803 1 NC_009484.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1624803 5161953 Acry_1461 Acidiphilium cryptum JF-5 biopolymer transport protein ExbD/TolR YP_001234588.1 1624339 D 349163 CDS YP_001234589.1 148260462 5161954 complement(1624848..1626221) 1 NC_009484.1 PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase 1626221 5161954 Acry_1462 Acidiphilium cryptum JF-5 D-lactate dehydrogenase YP_001234589.1 1624848 R 349163 CDS YP_001234590.1 148260463 5161957 1626342..1627154 1 NC_009484.1 PFAM: metallophosphoesterase; metallophosphoesterase 1627154 5161957 Acry_1463 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001234590.1 1626342 D 349163 CDS YP_001234591.1 148260464 5162043 complement(1627146..1627685) 1 NC_009484.1 PFAM: cytochrome B561; cytochrome B561 1627685 5162043 Acry_1464 Acidiphilium cryptum JF-5 cytochrome B561 YP_001234591.1 1627146 R 349163 CDS YP_001234592.1 148260465 5162044 1627734..1628738 1 NC_009484.1 hypothetical protein 1628738 5162044 Acry_1465 Acidiphilium cryptum JF-5 hypothetical protein YP_001234592.1 1627734 D 349163 CDS YP_001234593.1 148260466 5159756 complement(1628671..1629342) 1 NC_009484.1 PFAM: Negative transcriptional regulator; FMN-binding negative transcriptional regulator 1629342 5159756 Acry_1466 Acidiphilium cryptum JF-5 FMN-binding negative transcriptional regulator YP_001234593.1 1628671 R 349163 CDS YP_001234594.1 148260467 5160893 complement(1629352..1631010) 1 NC_009484.1 PFAM: shikimate kinase; 3-dehydroquinate synthase; 3-dehydroquinate synthase 1631010 5160893 Acry_1467 Acidiphilium cryptum JF-5 3-dehydroquinate synthase YP_001234594.1 1629352 R 349163 CDS YP_001234595.1 148260468 5160894 1631038..1631952 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 1631952 5160894 Acry_1468 Acidiphilium cryptum JF-5 phage integrase family protein YP_001234595.1 1631038 D 349163 CDS YP_001234596.1 148260469 5159920 complement(1631979..1632824) 1 NC_009484.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1632824 5159920 Acry_1469 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001234596.1 1631979 R 349163 CDS YP_001234597.1 148260470 5159846 complement(1632814..1633695) 1 NC_009484.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle 1633695 5159846 Acry_1470 Acidiphilium cryptum JF-5 GTP-binding signal recognition particle YP_001234597.1 1632814 R 349163 CDS YP_001234598.1 148260471 5159847 complement(1633696..1635771) 1 NC_009484.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1635771 flhA 5159847 flhA Acidiphilium cryptum JF-5 flagellar biosynthesis protein FlhA YP_001234598.1 1633696 R 349163 CDS YP_001234599.1 148260472 5159730 complement(1635771..1637126) 1 NC_009484.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator 1637126 5159730 Acry_1472 Acidiphilium cryptum JF-5 two component sigma54 specific Fis family transcriptional regulator YP_001234599.1 1635771 R 349163 CDS YP_001234600.1 148260473 5159529 complement(1637133..1637531) 1 NC_009484.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN 1637531 5159529 Acry_1473 Acidiphilium cryptum JF-5 flagellar motor switch protein FliN YP_001234600.1 1637133 R 349163 CDS YP_001234601.1 148260474 5159530 complement(1637497..1638507) 1 NC_009484.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1638507 fliG 5159530 fliG Acidiphilium cryptum JF-5 flagellar motor switch protein G YP_001234601.1 1637497 R 349163 CDS YP_001234602.1 148260475 5160046 complement(1638504..1640066) 1 NC_009484.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; flagellar M-ring protein FliF 1640066 5160046 Acry_1475 Acidiphilium cryptum JF-5 flagellar M-ring protein FliF YP_001234602.1 1638504 R 349163 CDS YP_001234603.1 148260476 5160052 complement(1640186..1640641) 1 NC_009484.1 PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 1640641 5160052 Acry_1476 Acidiphilium cryptum JF-5 zinc-binding CMP/dCMP deaminase YP_001234603.1 1640186 R 349163 CDS YP_001234604.1 148260477 5160053 1640696..1641409 1 NC_009484.1 PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 1641409 5160053 Acry_1477 Acidiphilium cryptum JF-5 peptidase C26 YP_001234604.1 1640696 D 349163 CDS YP_001234605.1 148260478 5160475 1641406..1642149 1 NC_009484.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RNA-binding S4 domain-containing protein 1642149 5160475 Acry_1478 Acidiphilium cryptum JF-5 RNA-binding S4 domain-containing protein YP_001234605.1 1641406 D 349163 CDS YP_001234606.1 148260479 5162463 1642146..1642703 1 NC_009484.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; putative methyltransferase 1642703 5162463 Acry_1479 Acidiphilium cryptum JF-5 putative methyltransferase YP_001234606.1 1642146 D 349163 CDS YP_001234607.1 148260480 5162464 complement(1642710..1643408) 1 NC_009484.1 hypothetical protein 1643408 5162464 Acry_1480 Acidiphilium cryptum JF-5 hypothetical protein YP_001234607.1 1642710 R 349163 CDS YP_001234608.1 148260481 5160222 complement(1643411..1644769) 1 NC_009484.1 PFAM: ABC-1 domain protein; hypothetical protein 1644769 5160222 Acry_1481 Acidiphilium cryptum JF-5 hypothetical protein YP_001234608.1 1643411 R 349163 CDS YP_001234609.1 148260482 5161808 complement(1644786..1646633) 1 NC_009484.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; pepF/M3 family oligoendopeptidase 1646633 5161808 Acry_1482 Acidiphilium cryptum JF-5 pepF/M3 family oligoendopeptidase YP_001234609.1 1644786 R 349163 CDS YP_001234610.1 148260483 5161809 1646732..1647553 1 NC_009484.1 PFAM: protein of unknown function DUF519; hypothetical protein 1647553 5161809 Acry_1483 Acidiphilium cryptum JF-5 hypothetical protein YP_001234610.1 1646732 D 349163 CDS YP_001234611.1 148260484 5159742 1647550..1648515 1 NC_009484.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 1648515 5159742 Acry_1484 Acidiphilium cryptum JF-5 NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein YP_001234611.1 1647550 D 349163 CDS YP_001234612.1 148260485 5161979 complement(1648523..1649230) 1 NC_009484.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 1649230 5161979 Acry_1485 Acidiphilium cryptum JF-5 haloacid dehalogenase YP_001234612.1 1648523 R 349163 CDS YP_001234613.1 148260486 5161980 complement(1649236..1649421) 1 NC_009484.1 hypothetical protein 1649421 5161980 Acry_1486 Acidiphilium cryptum JF-5 hypothetical protein YP_001234613.1 1649236 R 349163 CDS YP_001234614.1 148260487 5159635 1649474..1651864 1 NC_009484.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS 1651864 5159635 Acry_1487 Acidiphilium cryptum JF-5 mechanosensitive ion channel MscS YP_001234614.1 1649474 D 349163 CDS YP_001234615.1 148260488 5160085 1651917..1652642 1 NC_009484.1 hypothetical protein 1652642 5160085 Acry_1488 Acidiphilium cryptum JF-5 hypothetical protein YP_001234615.1 1651917 D 349163 CDS YP_001234616.1 148260489 5160086 complement(1652650..1653657) 1 NC_009484.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 1653657 5160086 Acry_1489 Acidiphilium cryptum JF-5 cysteine synthase A YP_001234616.1 1652650 R 349163 CDS YP_001234617.1 148260490 5159718 1653751..1654161 1 NC_009484.1 SMART: Rhodanese domain protein; rhodanese domain-containing protein 1654161 5159718 Acry_1490 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001234617.1 1653751 D 349163 CDS YP_001234618.1 148260491 5160102 1654243..1655472 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1655472 5160102 Acry_1491 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234618.1 1654243 D 349163 CDS YP_001234619.1 148260492 5160103 1655516..1656301 1 NC_009484.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 1656301 5160103 Acry_1492 Acidiphilium cryptum JF-5 methionine aminopeptidase YP_001234619.1 1655516 D 349163 CDS YP_001234620.1 148260493 5159970 1656346..1657113 1 NC_009484.1 PFAM: DNA repair protein RadC; DNA repair protein RadC 1657113 5159970 Acry_1493 Acidiphilium cryptum JF-5 DNA repair protein RadC YP_001234620.1 1656346 D 349163 CDS YP_001234621.1 148260494 5159514 complement(1657108..1657881) 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1657881 5159514 Acry_1494 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001234621.1 1657108 R 349163 CDS YP_001234622.1 148260495 5159515 1657999..1658652 1 NC_009484.1 PFAM: phosphoribosyltransferase; phosphoribosyltransferase 1658652 5159515 Acry_1495 Acidiphilium cryptum JF-5 phosphoribosyltransferase YP_001234622.1 1657999 D 349163 CDS YP_001234623.1 148260496 5160184 1658715..1658972 1 NC_009484.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 1658972 5160184 Acry_1496 Acidiphilium cryptum JF-5 glutaredoxin 3 YP_001234623.1 1658715 D 349163 CDS YP_001234624.1 148260497 5159901 1658969..1659424 1 NC_009484.1 PFAM: protein of unknown function DUF1178; hypothetical protein 1659424 5159901 Acry_1497 Acidiphilium cryptum JF-5 hypothetical protein YP_001234624.1 1658969 D 349163 CDS YP_001234625.1 148260498 5159902 1659441..1659983 1 NC_009484.1 carbonic anhydrase 1659983 5159902 Acry_1498 Acidiphilium cryptum JF-5 carbonic anhydrase YP_001234625.1 1659441 D 349163 CDS YP_001234626.1 148260499 5159505 1660013..1660600 1 NC_009484.1 hypothetical protein 1660600 5159505 Acry_1499 Acidiphilium cryptum JF-5 hypothetical protein YP_001234626.1 1660013 D 349163 CDS YP_001234627.1 148260500 5160121 complement(1660660..1662069) 1 NC_009484.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; hypothetical protein 1662069 5160121 Acry_1500 Acidiphilium cryptum JF-5 hypothetical protein YP_001234627.1 1660660 R 349163 CDS YP_001234628.1 148260501 5160122 1662261..1663646 1 NC_009484.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 1663646 5160122 Acry_1501 Acidiphilium cryptum JF-5 isocitrate lyase YP_001234628.1 1662261 D 349163 CDS YP_001234629.1 148260502 5159866 complement(1663732..1664775) 1 NC_009484.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; HhH-GPD family protein 1664775 5159866 Acry_1502 Acidiphilium cryptum JF-5 HhH-GPD family protein YP_001234629.1 1663732 R 349163 CDS YP_001234630.1 148260503 5160160 complement(1664772..1665263) 1 NC_009484.1 hypothetical protein 1665263 5160160 Acry_1503 Acidiphilium cryptum JF-5 hypothetical protein YP_001234630.1 1664772 R 349163 CDS YP_001234631.1 148260504 5160161 complement(1665269..1668016) 1 NC_009484.1 TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 1668016 5160161 Acry_1504 Acidiphilium cryptum JF-5 DNA polymerase I YP_001234631.1 1665269 R 349163 CDS YP_001234632.1 148260505 5159871 complement(1668013..1668240) 1 NC_009484.1 hypothetical protein 1668240 5159871 Acry_1505 Acidiphilium cryptum JF-5 hypothetical protein YP_001234632.1 1668013 R 349163 CDS YP_001234633.1 148260506 5162510 1668781..1669056 1 NC_009484.1 hypothetical protein 1669056 5162510 Acry_1506 Acidiphilium cryptum JF-5 hypothetical protein YP_001234633.1 1668781 D 349163 CDS YP_001234634.1 148260507 5160590 1669047..1669601 1 NC_009484.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1669601 dcd 5160590 dcd Acidiphilium cryptum JF-5 deoxycytidine triphosphate deaminase YP_001234634.1 1669047 D 349163 CDS YP_001234635.1 148260508 5160297 1669608..1670864 1 NC_009484.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1670864 5160297 Acry_1508 Acidiphilium cryptum JF-5 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001234635.1 1669608 D 349163 CDS YP_001234636.1 148260509 5160424 complement(1670801..1672075) 1 NC_009484.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 1672075 5160424 Acry_1509 Acidiphilium cryptum JF-5 cyclopropane-fatty-acyl-phospholipid synthase YP_001234636.1 1670801 R 349163 CDS YP_001234637.1 148260510 5160425 complement(1672239..1672799) 1 NC_009484.1 PFAM: ribosomal protein L9; 50S ribosomal protein L9 1672799 5160425 Acry_1510 Acidiphilium cryptum JF-5 50S ribosomal protein L9 YP_001234637.1 1672239 R 349163 CDS YP_001234638.1 148260511 5160451 complement(1672812..1673099) 1 NC_009484.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1673099 rpsR 5160451 rpsR Acidiphilium cryptum JF-5 30S ribosomal protein S18 YP_001234638.1 1672812 R 349163 CDS YP_001234639.1 148260512 5160277 complement(1673103..1673579) 1 NC_009484.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1673579 rpsF 5160277 rpsF Acidiphilium cryptum JF-5 30S ribosomal protein S6 YP_001234639.1 1673103 R 349163 CDS YP_001234640.1 148260513 5160278 complement(1673725..1674024) 1 NC_009484.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1674024 5160278 Acry_1513 Acidiphilium cryptum JF-5 antibiotic biosynthesis monooxygenase YP_001234640.1 1673725 R 349163 CDS YP_001234641.1 148260514 5160490 complement(1674040..1676028) 1 NC_009484.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L 1676028 5160490 Acry_1514 Acidiphilium cryptum JF-5 carbamoyl-phosphate synthase subunit L YP_001234641.1 1674040 R 349163 CDS YP_001234642.1 148260515 5160517 complement(1676034..1676822) 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1676822 5160517 Acry_1515 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001234642.1 1676034 R 349163 CDS YP_001234643.1 148260516 5160518 complement(1676827..1678434) 1 NC_009484.1 PFAM: carboxyl transferase; propionyl-CoA carboxylase 1678434 5160518 Acry_1516 Acidiphilium cryptum JF-5 propionyl-CoA carboxylase YP_001234643.1 1676827 R 349163 CDS YP_001234644.1 148260517 5160627 complement(1678331..1679254) 1 NC_009484.1 PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF glycosyl transferase 1679254 5160627 Acry_1517 Acidiphilium cryptum JF-5 WecB/TagA/CpsF glycosyl transferase YP_001234644.1 1678331 R 349163 CDS YP_001234645.1 148260518 5160785 complement(1679251..1680510) 1 NC_009484.1 hypothetical protein 1680510 5160785 Acry_1518 Acidiphilium cryptum JF-5 hypothetical protein YP_001234645.1 1679251 R 349163 CDS YP_001234646.1 148260519 5160786 1680590..1681522 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1681522 5160786 Acry_1519 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001234646.1 1680590 D 349163 CDS YP_001234647.1 148260520 5160702 1681519..1682514 1 NC_009484.1 PFAM: acyltransferase 3; acyltransferase 3 1682514 5160702 Acry_1520 Acidiphilium cryptum JF-5 acyltransferase 3 YP_001234647.1 1681519 D 349163 CDS YP_001234648.1 148260521 5160754 1682522..1682743 1 NC_009484.1 hypothetical protein 1682743 5160754 Acry_1521 Acidiphilium cryptum JF-5 hypothetical protein YP_001234648.1 1682522 D 349163 CDS YP_001234649.1 148260522 5160755 complement(1682701..1684065) 1 NC_009484.1 hypothetical protein 1684065 5160755 Acry_1522 Acidiphilium cryptum JF-5 hypothetical protein YP_001234649.1 1682701 R 349163 CDS YP_001234650.1 148260523 5160860 complement(1684073..1686229) 1 NC_009484.1 PFAM: lipopolysaccharide biosynthesis protein; non-specific protein-tyrosine kinase 1686229 5160860 Acry_1523 Acidiphilium cryptum JF-5 non-specific protein-tyrosine kinase YP_001234650.1 1684073 R 349163 CDS YP_001234651.1 148260524 5160822 1686368..1686958 1 NC_009484.1 PFAM: polysaccharide export protein; polysaccharide export protein 1686958 5160822 Acry_1524 Acidiphilium cryptum JF-5 polysaccharide export protein YP_001234651.1 1686368 D 349163 CDS YP_001234652.1 148260525 5160823 1687107..1688066 1 NC_009484.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; malonyl CoA-acyl carrier protein transacylase 1688066 5160823 Acry_1525 Acidiphilium cryptum JF-5 malonyl CoA-acyl carrier protein transacylase YP_001234652.1 1687107 D 349163 CDS YP_001234653.1 148260526 5160799 1688056..1688805 1 NC_009484.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; 3-oxoacyl-(acyl-carrier-protein) reductase 1688805 5160799 Acry_1526 Acidiphilium cryptum JF-5 3-oxoacyl-(acyl-carrier-protein) reductase YP_001234653.1 1688056 D 349163 CDS YP_001234654.1 148260527 5160940 1688985..1689224 1 NC_009484.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1689224 acpP 5160940 acpP Acidiphilium cryptum JF-5 acyl carrier protein YP_001234654.1 1688985 D 349163 CDS YP_001234655.1 148260528 5160941 1689244..1690512 1 NC_009484.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1690512 5160941 Acry_1528 Acidiphilium cryptum JF-5 3-oxoacyl-(acyl carrier protein) synthase II YP_001234655.1 1689244 D 349163 CDS YP_001234656.1 148260529 5160920 1690530..1691525 1 NC_009484.1 PFAM: aminodeoxychorismate lyase; aminodeoxychorismate lyase 1691525 5160920 Acry_1529 Acidiphilium cryptum JF-5 aminodeoxychorismate lyase YP_001234656.1 1690530 D 349163 CDS YP_001234657.1 148260530 5160777 1691636..1693570 1 NC_009484.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1693570 5160777 Acry_1530 Acidiphilium cryptum JF-5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_001234657.1 1691636 D 349163 CDS YP_001234658.1 148260531 5160778 1693567..1694682 1 NC_009484.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1694682 5160778 Acry_1531 Acidiphilium cryptum JF-5 succinyl-diaminopimelate desuccinylase YP_001234658.1 1693567 D 349163 CDS YP_001234659.1 148260532 5160898 1694679..1695284 1 NC_009484.1 hypothetical protein 1695284 5160898 Acry_1532 Acidiphilium cryptum JF-5 hypothetical protein YP_001234659.1 1694679 D 349163 CDS YP_001234660.1 148260533 5160950 complement(1695259..1696158) 1 NC_009484.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1696158 5160950 Acry_1533 Acidiphilium cryptum JF-5 uroporphyrin-III C/tetrapyrrole methyltransferase YP_001234660.1 1695259 R 349163 CDS YP_001234661.1 148260534 5160951 1696221..1697429 1 NC_009484.1 putative lipoprotein-like protein 1697429 5160951 Acry_1534 Acidiphilium cryptum JF-5 putative lipoprotein-like protein YP_001234661.1 1696221 D 349163 CDS YP_001234662.1 148260535 5160938 1697440..1698819 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1698819 5160938 Acry_1535 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001234662.1 1697440 D 349163 CDS YP_001234663.1 148260536 5160388 1698972..1699859 1 NC_009484.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1699859 5160388 Acry_1536 Acidiphilium cryptum JF-5 cation diffusion facilitator family transporter YP_001234663.1 1698972 D 349163 CDS YP_001234664.1 148260537 5160389 1699870..1700427 1 NC_009484.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 1700427 5160389 Acry_1537 Acidiphilium cryptum JF-5 ATP--cobalamin adenosyltransferase YP_001234664.1 1699870 D 349163 CDS YP_001234665.1 148260538 5160917 complement(1700447..1700839) 1 NC_009484.1 hypothetical protein 1700839 5160917 Acry_1538 Acidiphilium cryptum JF-5 hypothetical protein YP_001234665.1 1700447 R 349163 CDS YP_001234666.1 148260539 5160995 1701085..1701756 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1701756 5160995 Acry_1539 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234666.1 1701085 D 349163 CDS YP_001234667.1 148260540 5160996 1701753..1702649 1 NC_009484.1 hypothetical protein 1702649 5160996 Acry_1540 Acidiphilium cryptum JF-5 hypothetical protein YP_001234667.1 1701753 D 349163 CDS YP_001234668.1 148260541 5161151 1702750..1703730 1 NC_009484.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 1703730 5161151 Acry_1541 Acidiphilium cryptum JF-5 quinolinate synthetase complex subunit A YP_001234668.1 1702750 D 349163 CDS YP_001234669.1 148260542 5161066 1703730..1705235 1 NC_009484.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase 1705235 5161066 Acry_1542 Acidiphilium cryptum JF-5 L-aspartate oxidase YP_001234669.1 1703730 D 349163 CDS YP_001234670.1 148260543 5161067 1705232..1706077 1 NC_009484.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1706077 5161067 Acry_1543 Acidiphilium cryptum JF-5 nicotinate-nucleotide pyrophosphorylase YP_001234670.1 1705232 D 349163 CDS YP_001234671.1 148260544 5162385 1706084..1706566 1 NC_009484.1 hypothetical protein 1706566 5162385 Acry_1544 Acidiphilium cryptum JF-5 hypothetical protein YP_001234671.1 1706084 D 349163 CDS YP_001234672.1 148260545 5161147 1706668..1706973 1 NC_009484.1 hypothetical protein 1706973 5161147 Acry_1545 Acidiphilium cryptum JF-5 hypothetical protein YP_001234672.1 1706668 D 349163 CDS YP_001234673.1 148260546 5161148 complement(1706986..1707744) 1 NC_009484.1 PFAM: molybdopterin binding domain; molybdopterin binding domain-containing protein 1707744 5161148 Acry_1546 Acidiphilium cryptum JF-5 molybdopterin binding domain-containing protein YP_001234673.1 1706986 R 349163 CDS YP_001234674.1 148260547 5161266 complement(1707759..1708763) 1 NC_009484.1 PFAM: NUDIX hydrolase; GCN5-related N-acetyltransferase; NUDIX hydrolase 1708763 5161266 Acry_1547 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001234674.1 1707759 R 349163 CDS YP_001234675.1 148260548 5161093 1708867..1710129 1 NC_009484.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1710129 proA 5161093 proA Acidiphilium cryptum JF-5 gamma-glutamyl phosphate reductase YP_001234675.1 1708867 D 349163 CDS YP_001234676.1 148260549 5161843 1711282..1711758 1 NC_009484.1 PFAM: protein of unknown function DUF163; hypothetical protein 1711758 5161843 Acry_1551 Acidiphilium cryptum JF-5 hypothetical protein YP_001234676.1 1711282 D 349163 CDS YP_001234677.1 148260550 5161830 complement(1711945..1714788) 1 NC_009484.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1714788 5161830 Acry_1552 Acidiphilium cryptum JF-5 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001234677.1 1711945 R 349163 CDS YP_001234678.1 148260551 5161257 complement(1714785..1715771) 1 NC_009484.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1715771 5161257 Acry_1553 Acidiphilium cryptum JF-5 PAS/PAC sensor-containing diguanylate cyclase YP_001234678.1 1714785 R 349163 CDS YP_001234679.1 148260552 5161258 complement(1715912..1716631) 1 NC_009484.1 hypothetical protein 1716631 5161258 Acry_1554 Acidiphilium cryptum JF-5 hypothetical protein YP_001234679.1 1715912 R 349163 CDS YP_001234680.1 148260553 5161420 complement(1716661..1717017) 1 NC_009484.1 hypothetical protein 1717017 5161420 Acry_1555 Acidiphilium cryptum JF-5 hypothetical protein YP_001234680.1 1716661 R 349163 CDS YP_001234681.1 148260554 5161404 1717182..1718342 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1718342 5161404 Acry_1556 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001234681.1 1717182 D 349163 CDS YP_001234682.1 148260555 5161405 1718418..1719080 1 NC_009484.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1719080 5161405 Acry_1557 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001234682.1 1718418 D 349163 CDS YP_001234683.1 148260556 5161399 1719110..1719916 1 NC_009484.1 PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 1719916 5161399 Acry_1558 Acidiphilium cryptum JF-5 phytanoyl-CoA dioxygenase YP_001234683.1 1719110 D 349163 CDS YP_001234684.1 148260557 5160903 1719921..1721264 1 NC_009484.1 PFAM: oxidoreductase domain protein; SAF domain; SAF domain-containing protein 1721264 5160903 Acry_1559 Acidiphilium cryptum JF-5 SAF domain-containing protein YP_001234684.1 1719921 D 349163 CDS YP_001234685.1 148260558 5160904 1721332..1722666 1 NC_009484.1 TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1722666 5160904 Acry_1560 Acidiphilium cryptum JF-5 oxygen-independent coproporphyrinogen III oxidase YP_001234685.1 1721332 D 349163 CDS YP_001234686.1 148260559 5161381 complement(1722673..1724976) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 1724976 5161381 Acry_1561 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001234686.1 1722673 R 349163 CDS YP_001234687.1 148260560 5161532 complement(1725194..1725724) 1 NC_009484.1 PFAM: DinB family protein; DinB family protein 1725724 5161532 Acry_1562 Acidiphilium cryptum JF-5 DinB family protein YP_001234687.1 1725194 R 349163 CDS YP_001234688.1 148260561 5161533 complement(1725865..1726302) 1 NC_009484.1 cytochrome c-like protein 1726302 5161533 Acry_1563 Acidiphilium cryptum JF-5 cytochrome c-like protein YP_001234688.1 1725865 R 349163 CDS YP_001234689.1 148260562 5161525 complement(1726476..1727150) 1 NC_009484.1 S-isoprenylcysteine methyltransferase-like protein 1727150 5161525 Acry_1564 Acidiphilium cryptum JF-5 S-isoprenylcysteine methyltransferase-like protein YP_001234689.1 1726476 R 349163 CDS YP_001234690.1 148260563 5161421 1727450..1727749 1 NC_009484.1 hypothetical protein 1727749 5161421 Acry_1565 Acidiphilium cryptum JF-5 hypothetical protein YP_001234690.1 1727450 D 349163 CDS YP_001234691.1 148260564 5161422 complement(1727711..1727953) 1 NC_009484.1 hypothetical protein 1727953 5161422 Acry_1566 Acidiphilium cryptum JF-5 hypothetical protein YP_001234691.1 1727711 R 349163 CDS YP_001234692.1 148260565 5161459 1728165..1729016 1 NC_009484.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1729016 5161459 Acry_1567 Acidiphilium cryptum JF-5 FkbM family methyltransferase YP_001234692.1 1728165 D 349163 CDS YP_001234693.1 148260566 5161621 complement(1729087..1729782) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1729782 5161621 Acry_1568 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234693.1 1729087 R 349163 CDS YP_001234694.1 148260567 5161622 1729995..1730420 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 1730420 5161622 Acry_1569 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001234694.1 1729995 D 349163 CDS YP_001234695.1 148260568 5161712 1730488..1732194 1 NC_009484.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1732194 5161712 Acry_1570 Acidiphilium cryptum JF-5 Pyrrolo-quinoline quinone YP_001234695.1 1730488 D 349163 CDS YP_001234696.1 148260569 5161747 complement(1732264..1732575) 1 NC_009484.1 hypothetical protein 1732575 5161747 Acry_1571 Acidiphilium cryptum JF-5 hypothetical protein YP_001234696.1 1732264 R 349163 CDS YP_001234697.1 148260570 5161748 1733001..1734230 1 NC_009484.1 PFAM: acyltransferase 3; acyltransferase 3 1734230 5161748 Acry_1572 Acidiphilium cryptum JF-5 acyltransferase 3 YP_001234697.1 1733001 D 349163 CDS YP_001234698.1 148260571 5161910 1734639..1736438 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1736438 5161910 Acry_1573 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001234698.1 1734639 D 349163 CDS YP_001234699.1 148260572 5161682 1736457..1737764 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1737764 5161682 Acry_1574 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001234699.1 1736457 D 349163 CDS YP_001234700.1 148260573 5161683 1737777..1738568 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1738568 5161683 Acry_1575 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234700.1 1737777 D 349163 CDS YP_001234701.1 148260574 5161560 1738609..1739781 1 NC_009484.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1739781 5161560 Acry_1576 Acidiphilium cryptum JF-5 acetyl-CoA acetyltransferase YP_001234701.1 1738609 D 349163 CDS YP_001234702.1 148260575 5161702 1739778..1740242 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; dehydratase 1740242 5161702 Acry_1577 Acidiphilium cryptum JF-5 dehydratase YP_001234702.1 1739778 D 349163 CDS YP_001234703.1 148260576 5161703 1740327..1741307 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 1741307 5161703 Acry_1578 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001234703.1 1740327 D 349163 CDS YP_001234704.1 148260577 5161457 complement(1741350..1742846) 1 NC_009484.1 ATPase-like protein 1742846 5161457 Acry_1579 Acidiphilium cryptum JF-5 ATPase-like protein YP_001234704.1 1741350 R 349163 CDS YP_001234705.1 148260578 5161770 complement(1743185..1743907) 1 NC_009484.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; CRP/FNR family transcriptional regulator 1743907 5161770 Acry_1580 Acidiphilium cryptum JF-5 CRP/FNR family transcriptional regulator YP_001234705.1 1743185 R 349163 CDS YP_001234706.1 148260579 5161771 1744052..1747786 1 NC_009484.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 1747786 5161771 Acry_1581 Acidiphilium cryptum JF-5 nitrate reductase subunit alpha YP_001234706.1 1744052 D 349163 CDS YP_001234707.1 148260580 5161716 1747786..1749312 1 NC_009484.1 TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrate reductase subunit beta 1749312 5161716 Acry_1582 Acidiphilium cryptum JF-5 nitrate reductase subunit beta YP_001234707.1 1747786 D 349163 CDS YP_001234708.1 148260581 5161890 1749320..1749976 1 NC_009484.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; nitrate reductase molybdenum cofactor assembly chaperone 1749976 5161890 Acry_1583 Acidiphilium cryptum JF-5 nitrate reductase molybdenum cofactor assembly chaperone YP_001234708.1 1749320 D 349163 CDS YP_001234709.1 148260582 5161891 1749973..1750689 1 NC_009484.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 1750689 5161891 Acry_1584 Acidiphilium cryptum JF-5 respiratory nitrate reductase subunit gamma YP_001234709.1 1749973 D 349163 CDS YP_001234710.1 148260583 5161825 1750686..1751432 1 NC_009484.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1751432 5161825 Acry_1585 Acidiphilium cryptum JF-5 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001234710.1 1750686 D 349163 CDS YP_001234711.1 148260584 5161887 1751429..1752775 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1752775 5161887 Acry_1586 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234711.1 1751429 D 349163 CDS YP_001234712.1 148260585 5161888 complement(1752785..1753741) 1 NC_009484.1 methylglyoxal synthase-like protein 1753741 5161888 Acry_1587 Acidiphilium cryptum JF-5 methylglyoxal synthase-like protein YP_001234712.1 1752785 R 349163 CDS YP_001234713.1 148260586 5161756 1753992..1755659 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 1755659 5161756 Acry_1588 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001234713.1 1753992 D 349163 CDS YP_001234714.1 148260587 5160564 complement(1755654..1756700) 1 NC_009484.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase 1756700 5160564 Acry_1589 Acidiphilium cryptum JF-5 alanine racemase YP_001234714.1 1755654 R 349163 CDS YP_001234715.1 148260588 5160565 complement(1756712..1757740) 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1757740 5160565 Acry_1590 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001234715.1 1756712 R 349163 CDS YP_001234716.1 148260589 5162197 1757887..1758684 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1758684 5162197 Acry_1591 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234716.1 1757887 D 349163 CDS YP_001234717.1 148260590 5161936 1758681..1759565 1 NC_009484.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1759565 5161936 Acry_1592 Acidiphilium cryptum JF-5 2-hydroxy-3-oxopropionate reductase YP_001234717.1 1758681 D 349163 CDS YP_001234718.1 148260591 5161937 1759562..1761076 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1761076 5161937 Acry_1593 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234718.1 1759562 D 349163 CDS YP_001234719.1 148260592 5161886 1761063..1762127 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1762127 5161886 Acry_1594 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234719.1 1761063 D 349163 CDS YP_001234720.1 148260593 5161867 1762124..1763230 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 1763230 5161867 Acry_1595 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001234720.1 1762124 D 349163 CDS YP_001234721.1 148260594 5161868 complement(1763188..1763595) 1 NC_009484.1 hypothetical protein 1763595 5161868 Acry_1596 Acidiphilium cryptum JF-5 hypothetical protein YP_001234721.1 1763188 R 349163 CDS YP_001234722.1 148260595 5162247 complement(1763732..1765174) 1 NC_009484.1 PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB 1765174 5162247 Acry_1597 Acidiphilium cryptum JF-5 carbohydrate-selective porin OprB YP_001234722.1 1763732 R 349163 CDS YP_001234723.1 148260596 5162219 1765299..1766669 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 1766669 5162219 Acry_1598 Acidiphilium cryptum JF-5 general substrate transporter YP_001234723.1 1765299 D 349163 CDS YP_001234724.1 148260597 5162220 1766666..1767490 1 NC_009484.1 PFAM: metallophosphoesterase; metallophosphoesterase 1767490 5162220 Acry_1599 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001234724.1 1766666 D 349163 CDS YP_001234725.1 148260598 5162189 complement(1767512..1768294) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1768294 5162189 Acry_1600 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234725.1 1767512 R 349163 CDS YP_001234726.1 148260599 5162144 complement(1768299..1769336) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 1769336 5162144 Acry_1601 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001234726.1 1768299 R 349163 CDS YP_001234727.1 148260600 5162145 complement(1769365..1770414) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1770414 5162145 Acry_1602 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234727.1 1769365 R 349163 CDS YP_001234728.1 148260601 5162065 1770549..1771169 1 NC_009484.1 hypothetical protein 1771169 5162065 Acry_1603 Acidiphilium cryptum JF-5 hypothetical protein YP_001234728.1 1770549 D 349163 CDS YP_001234729.1 148260602 5162133 complement(1771226..1772338) 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 1772338 5162133 Acry_1604 Acidiphilium cryptum JF-5 diguanylate cyclase YP_001234729.1 1771226 R 349163 CDS YP_001234730.1 148260603 5162134 complement(1772570..1773565) 1 NC_009484.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1773565 5162134 Acry_1605 Acidiphilium cryptum JF-5 molybdenum cofactor biosynthesis protein A YP_001234730.1 1772570 R 349163 CDS YP_001234731.1 148260604 5162038 1773741..1774328 1 NC_009484.1 PFAM: protein of unknown function DUF1013; hypothetical protein 1774328 5162038 Acry_1606 Acidiphilium cryptum JF-5 hypothetical protein YP_001234731.1 1773741 D 349163 CDS YP_001234732.1 148260605 5162021 complement(1774438..1774605) 1 NC_009484.1 PFAM: protein of unknown function DUF465; hypothetical protein 1774605 5162021 Acry_1607 Acidiphilium cryptum JF-5 hypothetical protein YP_001234732.1 1774438 R 349163 CDS YP_001234733.1 148260606 5162022 1774809..1775012 1 NC_009484.1 PFAM: protein of unknown function DUF465; hypothetical protein 1775012 5162022 Acry_1608 Acidiphilium cryptum JF-5 hypothetical protein YP_001234733.1 1774809 D 349163 CDS YP_001234734.1 148260607 5162006 1775033..1775503 1 NC_009484.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1775503 5162006 Acry_1609 Acidiphilium cryptum JF-5 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001234734.1 1775033 D 349163 CDS YP_001234735.1 148260608 5161963 1775500..1776645 1 NC_009484.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1776645 5161963 Acry_1610 Acidiphilium cryptum JF-5 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001234735.1 1775500 D 349163 CDS YP_001234736.1 148260609 5161964 complement(1776671..1778239) 1 NC_009484.1 PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; ATP dependent DNA ligase 1778239 5161964 Acry_1611 Acidiphilium cryptum JF-5 ATP dependent DNA ligase YP_001234736.1 1776671 R 349163 CDS YP_001234737.1 148260610 5162452 complement(1778236..1779300) 1 NC_009484.1 RNA procession exonuclease-like protein 1779300 5162452 Acry_1612 Acidiphilium cryptum JF-5 RNA procession exonuclease-like protein YP_001234737.1 1778236 R 349163 CDS YP_001234738.1 148260611 5161443 1779310..1781739 1 NC_009484.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1781739 5161443 Acry_1613 Acidiphilium cryptum JF-5 DEAD/DEAH box helicase YP_001234738.1 1779310 D 349163 CDS YP_001234739.1 148260612 5161444 1781756..1782433 1 NC_009484.1 ICC-like phosphoesterase 1782433 5161444 Acry_1614 Acidiphilium cryptum JF-5 ICC-like phosphoesterase YP_001234739.1 1781756 D 349163 CDS YP_001234740.1 148260613 5161254 1782433..1783848 1 NC_009484.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 1783848 5161254 Acry_1615 Acidiphilium cryptum JF-5 deoxyribodipyrimidine photo-lyase YP_001234740.1 1782433 D 349163 CDS YP_001234741.1 148260614 5160901 1783845..1785125 1 NC_009484.1 PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 1785125 5160901 Acry_1616 Acidiphilium cryptum JF-5 amine oxidase YP_001234741.1 1783845 D 349163 CDS YP_001234742.1 148260615 5160902 1785122..1785886 1 NC_009484.1 PFAM: protein of unknown function DUF1365; hypothetical protein 1785886 5160902 Acry_1617 Acidiphilium cryptum JF-5 hypothetical protein YP_001234742.1 1785122 D 349163 CDS YP_001234743.1 148260616 5162580 1785883..1787100 1 NC_009484.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 1787100 5162580 Acry_1618 Acidiphilium cryptum JF-5 cyclopropane-fatty-acyl-phospholipid synthase YP_001234743.1 1785883 D 349163 CDS YP_001234744.1 148260617 5160828 1787113..1788423 1 NC_009484.1 Na+/melibiose symporter and related transporter-like protein 1788423 5160828 Acry_1619 Acidiphilium cryptum JF-5 Na+/melibiose symporter and related transporter-like protein YP_001234744.1 1787113 D 349163 CDS YP_001234745.1 148260618 5160829 1788420..1789100 1 NC_009484.1 PFAM: metallophosphoesterase; metallophosphoesterase 1789100 5160829 Acry_1620 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001234745.1 1788420 D 349163 CDS YP_001234746.1 148260619 5159520 complement(1789181..1790572) 1 NC_009484.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; dihydrolipoamide dehydrogenase 1790572 5159520 Acry_1621 Acidiphilium cryptum JF-5 dihydrolipoamide dehydrogenase YP_001234746.1 1789181 R 349163 CDS YP_001234747.1 148260620 5160551 complement(1790583..1791815) 1 NC_009484.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 1791815 5160551 Acry_1622 Acidiphilium cryptum JF-5 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_001234747.1 1790583 R 349163 CDS YP_001234748.1 148260621 5160552 complement(1791848..1794697) 1 NC_009484.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; Transketolase, central region; 2-oxoglutarate dehydrogenase, E1 subunit 1794697 5160552 Acry_1623 Acidiphilium cryptum JF-5 2-oxoglutarate dehydrogenase, E1 subunit YP_001234748.1 1791848 R 349163 CDS YP_001234749.1 148260622 5160065 complement(1794888..1795763) 1 NC_009484.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha 1795763 5160065 Acry_1624 Acidiphilium cryptum JF-5 succinyl-CoA synthetase subunit alpha YP_001234749.1 1794888 R 349163 CDS YP_001234750.1 148260623 5159941 complement(1795763..1796959) 1 NC_009484.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta 1796959 5159941 Acry_1625 Acidiphilium cryptum JF-5 succinyl-CoA synthetase subunit beta YP_001234750.1 1795763 R 349163 CDS YP_001234751.1 148260624 5159942 complement(1797082..1798197) 1 NC_009484.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 1798197 5159942 Acry_1626 Acidiphilium cryptum JF-5 AFG1 family ATPase YP_001234751.1 1797082 R 349163 CDS YP_001234752.1 148260625 5162307 complement(1798288..1798614) 1 NC_009484.1 hypothetical protein 1798614 5162307 Acry_1627 Acidiphilium cryptum JF-5 hypothetical protein YP_001234752.1 1798288 R 349163 CDS YP_001234753.1 148260626 5161540 1798629..1800002 1 NC_009484.1 PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltranspeptidase 1800002 5161540 Acry_1628 Acidiphilium cryptum JF-5 gamma-glutamyltranspeptidase YP_001234753.1 1798629 D 349163 CDS YP_001234754.1 148260627 5161541 1800010..1801179 1 NC_009484.1 PFAM: aminotransferase, class I and II; class I and II aminotransferase 1801179 5161541 Acry_1629 Acidiphilium cryptum JF-5 class I and II aminotransferase YP_001234754.1 1800010 D 349163 CDS YP_001234755.1 148260628 5159974 complement(1801187..1801888) 1 NC_009484.1 PFAM: CBS domain containing protein; transport-associated; SMART: Transport-associated and nodulation region, bacteria; signal-transduction protein 1801888 5159974 Acry_1630 Acidiphilium cryptum JF-5 signal-transduction protein YP_001234755.1 1801187 R 349163 CDS YP_001234756.1 148260629 5159773 complement(1801974..1802906) 1 NC_009484.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 1802906 5159773 Acry_1631 Acidiphilium cryptum JF-5 CRP/FNR family transcriptional regulator YP_001234756.1 1801974 R 349163 CDS YP_001234757.1 148260630 5159774 1802939..1803397 1 NC_009484.1 hypothetical protein 1803397 5159774 Acry_1632 Acidiphilium cryptum JF-5 hypothetical protein YP_001234757.1 1802939 D 349163 CDS YP_001234758.1 148260631 5159629 complement(1803619..1803828) 1 NC_009484.1 hypothetical protein 1803828 5159629 Acry_1633 Acidiphilium cryptum JF-5 hypothetical protein YP_001234758.1 1803619 R 349163 CDS YP_001234759.1 148260632 5160191 complement(1803846..1804985) 1 NC_009484.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 1804985 5160191 Acry_1634 Acidiphilium cryptum JF-5 cytochrome d ubiquinol oxidase subunit II YP_001234759.1 1803846 R 349163 CDS YP_001234760.1 148260633 5160192 complement(1804998..1806611) 1 NC_009484.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 1806611 5160192 Acry_1635 Acidiphilium cryptum JF-5 cytochrome bd ubiquinol oxidase subunit I YP_001234760.1 1804998 R 349163 CDS YP_001234761.1 148260634 5159712 complement(1806732..1808486) 1 NC_009484.1 TIGRFAM: Beta tubulin, autoregulation binding site; PFAM: ABC transporter related; SMART: AAA ATPase; Beta tubulin, autoregulation binding site 1808486 5159712 Acry_1636 Acidiphilium cryptum JF-5 Beta tubulin, autoregulation binding site YP_001234761.1 1806732 R 349163 CDS YP_001234762.1 148260635 5159644 complement(1808474..1810243) 1 NC_009484.1 TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter 1810243 5159644 Acry_1637 Acidiphilium cryptum JF-5 ABC transporter YP_001234762.1 1808474 R 349163 CDS YP_001234763.1 148260636 5159645 1810426..1811736 1 NC_009484.1 PFAM: Cl- channel, voltage-gated family protein; Cl- channel, voltage-gated family protein 1811736 5159645 Acry_1638 Acidiphilium cryptum JF-5 Cl- channel, voltage-gated family protein YP_001234763.1 1810426 D 349163 CDS YP_001234764.1 148260637 5160057 1811813..1812316 1 NC_009484.1 PFAM: OsmC family protein; OsmC family protein 1812316 5160057 Acry_1639 Acidiphilium cryptum JF-5 OsmC family protein YP_001234764.1 1811813 D 349163 CDS YP_001234765.1 148260638 5160418 complement(1812385..1813362) 1 NC_009484.1 Zn-dependent hydrolase of the beta-lactamase fold-like protein 1813362 5160418 Acry_1640 Acidiphilium cryptum JF-5 Zn-dependent hydrolase of the beta-lactamase fold-like protein YP_001234765.1 1812385 R 349163 CDS YP_001234766.1 148260639 5160419 complement(1813365..1814147) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1814147 5160419 Acry_1641 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234766.1 1813365 R 349163 CDS YP_001234767.1 148260640 5160045 1814231..1815448 1 NC_009484.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1815448 5160045 Acry_1642 Acidiphilium cryptum JF-5 L-carnitine dehydratase/bile acid-inducible protein F YP_001234767.1 1814231 D 349163 CDS YP_001234768.1 148260641 5160213 complement(1815506..1816519) 1 NC_009484.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; TonB family protein 1816519 5160213 Acry_1643 Acidiphilium cryptum JF-5 TonB family protein YP_001234768.1 1815506 R 349163 CDS YP_001234769.1 148260642 5161921 complement(1817014..1818165) 1 NC_009484.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1818165 5161921 Acry_1645 Acidiphilium cryptum JF-5 chaperone protein DnaJ YP_001234769.1 1817014 R 349163 CDS YP_001234770.1 148260643 5160770 complement(1818260..1820167) 1 NC_009484.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1820167 dnaK 5160770 dnaK Acidiphilium cryptum JF-5 molecular chaperone DnaK YP_001234770.1 1818260 R 349163 CDS YP_001234771.1 148260644 5160783 complement(1820326..1820934) 1 NC_009484.1 PFAM: GrpE protein; GrpE protein HSP-70 cofactor 1820934 5160783 Acry_1647 Acidiphilium cryptum JF-5 GrpE protein HSP-70 cofactor YP_001234771.1 1820326 R 349163 CDS YP_001234772.1 148260645 5160784 1821062..1821346 1 NC_009484.1 hypothetical protein 1821346 5160784 Acry_1648 Acidiphilium cryptum JF-5 hypothetical protein YP_001234772.1 1821062 D 349163 CDS YP_001234773.1 148260646 5160707 complement(1821333..1822097) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1822097 5160707 Acry_1649 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234773.1 1821333 R 349163 CDS YP_001234774.1 148260647 5160763 complement(1822094..1822840) 1 NC_009484.1 hypothetical protein 1822840 5160763 Acry_1650 Acidiphilium cryptum JF-5 hypothetical protein YP_001234774.1 1822094 R 349163 CDS YP_001234775.1 148260648 5160764 complement(1822837..1823406) 1 NC_009484.1 hypothetical protein 1823406 5160764 Acry_1651 Acidiphilium cryptum JF-5 hypothetical protein YP_001234775.1 1822837 R 349163 CDS YP_001234776.1 148260649 5160934 1823418..1824377 1 NC_009484.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 1824377 5160934 Acry_1652 Acidiphilium cryptum JF-5 homoserine kinase YP_001234776.1 1823418 D 349163 CDS YP_001234777.1 148260650 5162400 1824367..1824849 1 NC_009484.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1824849 rnhA 5162400 rnhA Acidiphilium cryptum JF-5 ribonuclease H YP_001234777.1 1824367 D 349163 CDS YP_001234778.1 148260651 5162401 complement(1824868..1825611) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1825611 5162401 Acry_1654 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234778.1 1824868 R 349163 CDS YP_001234779.1 148260652 5160547 complement(1825623..1826708) 1 NC_009484.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1826708 5160547 Acry_1655 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234779.1 1825623 R 349163 CDS YP_001234780.1 148260653 5161185 complement(1826725..1827546) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1827546 5161185 Acry_1656 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001234780.1 1826725 R 349163 CDS YP_001234781.1 148260654 5161186 complement(1827549..1828547) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1828547 5161186 Acry_1657 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001234781.1 1827549 R 349163 CDS YP_001234782.1 148260655 5161428 complement(1828564..1829913) 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1829913 5161428 Acry_1658 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001234782.1 1828564 R 349163 CDS YP_001234783.1 148260656 5160413 complement(1830012..1831031) 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1831031 5160413 Acry_1659 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001234783.1 1830012 R 349163 CDS YP_001234784.1 148260657 5160414 complement(1831044..1832534) 1 NC_009484.1 PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 1832534 5160414 Acry_1660 Acidiphilium cryptum JF-5 carbohydrate kinase YP_001234784.1 1831044 R 349163 CDS YP_001234785.1 148260658 5161513 complement(1832575..1833612) 1 NC_009484.1 PFAM: putative sugar-binding domain protein; DeoR family transcriptional regulator 1833612 5161513 Acry_1661 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001234785.1 1832575 R 349163 CDS YP_001234786.1 148260659 5160481 complement(1833759..1834199) 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; dehydratase 1834199 5160481 Acry_1662 Acidiphilium cryptum JF-5 dehydratase YP_001234786.1 1833759 R 349163 CDS YP_001234787.1 148260660 5160482 complement(1834196..1835299) 1 NC_009484.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1835299 hrcA 5160482 hrcA Acidiphilium cryptum JF-5 heat-inducible transcription repressor YP_001234787.1 1834196 R 349163 CDS YP_001234788.1 148260661 5161752 1835366..1836097 1 NC_009484.1 TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH 1836097 5161752 Acry_1664 Acidiphilium cryptum JF-5 ribonuclease PH YP_001234788.1 1835366 D 349163 CDS YP_001234789.1 148260662 5161653 1836105..1836692 1 NC_009484.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1836692 5161653 Acry_1665 Acidiphilium cryptum JF-5 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_001234789.1 1836105 D 349163 CDS YP_001234790.1 148260663 5161654 complement(1836708..1841246) 1 NC_009484.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; glutamate synthase 1841246 5161654 Acry_1666 Acidiphilium cryptum JF-5 glutamate synthase YP_001234790.1 1836708 R 349163 CDS YP_001234791.1 148260664 5161799 complement(1841252..1842703) 1 NC_009484.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 1842703 5161799 Acry_1667 Acidiphilium cryptum JF-5 putative oxidoreductase YP_001234791.1 1841252 R 349163 CDS YP_001234792.1 148260665 5161630 complement(1842881..1843831) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NADH dehydrogenase (ubiquinone) 1843831 5161630 Acry_1668 Acidiphilium cryptum JF-5 NADH dehydrogenase (ubiquinone) YP_001234792.1 1842881 R 349163 CDS YP_001234793.1 148260666 5161911 1844106..1844762 1 NC_009484.1 PFAM: 3'-5' exonuclease; 3'-5' exonuclease 1844762 5161911 Acry_1669 Acidiphilium cryptum JF-5 3'-5' exonuclease YP_001234793.1 1844106 D 349163 CDS YP_001234794.1 148260667 5161889 1844826..1845848 1 NC_009484.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1845848 5161889 Acry_1670 Acidiphilium cryptum JF-5 KpsF/GutQ family protein YP_001234794.1 1844826 D 349163 CDS YP_001234795.1 148260668 5162537 1845845..1846585 1 NC_009484.1 PFAM: protein of unknown function DUF1239; hypothetical protein 1846585 5162537 Acry_1671 Acidiphilium cryptum JF-5 hypothetical protein YP_001234795.1 1845845 D 349163 CDS YP_001234796.1 148260669 5162538 1846582..1847553 1 NC_009484.1 PFAM: OstA family protein; OstA family protein 1847553 5162538 Acry_1672 Acidiphilium cryptum JF-5 OstA family protein YP_001234796.1 1846582 D 349163 CDS YP_001234797.1 148260670 5162260 1847550..1848344 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1848344 5162260 Acry_1673 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234797.1 1847550 D 349163 CDS YP_001234798.1 148260671 5162206 1848475..1849128 1 NC_009484.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1849128 5162206 Acry_1674 Acidiphilium cryptum JF-5 50S ribosomal protein L25/general stress protein Ctc YP_001234798.1 1848475 D 349163 CDS YP_001234799.1 148260672 5162207 1849147..1849725 1 NC_009484.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1849725 5162207 Acry_1675 Acidiphilium cryptum JF-5 peptidyl-tRNA hydrolase YP_001234799.1 1849147 D 349163 CDS YP_001234800.1 148260673 5162059 1849727..1850821 1 NC_009484.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1850821 5162059 Acry_1676 Acidiphilium cryptum JF-5 GTP-dependent nucleic acid-binding protein EngD YP_001234800.1 1849727 D 349163 CDS YP_001234801.1 148260674 5162114 1850837..1852993 1 NC_009484.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1852993 5162114 Acry_1677 Acidiphilium cryptum JF-5 primosome assembly protein PriA YP_001234801.1 1850837 D 349163 CDS YP_001234802.1 148260675 5162115 1853148..1853741 1 NC_009484.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; ATP synthase F1 subunit delta 1853741 5162115 Acry_1678 Acidiphilium cryptum JF-5 ATP synthase F1 subunit delta YP_001234802.1 1853148 D 349163 CDS YP_001234803.1 148260676 5161916 1853743..1855275 1 NC_009484.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1855275 5161916 Acry_1679 Acidiphilium cryptum JF-5 F0F1 ATP synthase subunit alpha YP_001234803.1 1853743 D 349163 CDS YP_001234804.1 148260677 5161325 1855292..1856182 1 NC_009484.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1856182 5161325 Acry_1680 Acidiphilium cryptum JF-5 F0F1 ATP synthase subunit gamma YP_001234804.1 1855292 D 349163 CDS YP_001234805.1 148260678 5161326 1856202..1857632 1 NC_009484.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1857632 5161326 Acry_1681 Acidiphilium cryptum JF-5 F0F1 ATP synthase subunit beta YP_001234805.1 1856202 D 349163 CDS YP_001234806.1 148260679 5160489 1857637..1858050 1 NC_009484.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; ATP synthase F1 subunit epsilon 1858050 5160489 Acry_1682 Acidiphilium cryptum JF-5 ATP synthase F1 subunit epsilon YP_001234806.1 1857637 D 349163 CDS YP_001234807.1 148260680 5160176 1858127..1859638 1 NC_009484.1 PFAM: Malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 1859638 5160176 Acry_1683 Acidiphilium cryptum JF-5 malonyl-CoA decarboxylase YP_001234807.1 1858127 D 349163 CDS YP_001234808.1 148260681 5160177 1859729..1861033 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1861033 5160177 Acry_1684 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234808.1 1859729 D 349163 CDS YP_001234809.1 148260682 5162584 1861136..1863085 1 NC_009484.1 TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase 1863085 5162584 Acry_1685 Acidiphilium cryptum JF-5 squalene-hopene cyclase YP_001234809.1 1861136 D 349163 CDS YP_001234810.1 148260683 5161848 complement(1863275..1864246) 1 NC_009484.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 1864246 5161848 Acry_1686 Acidiphilium cryptum JF-5 peptide chain release factor 2 YP_001234810.1 1863275 R 349163 CDS YP_001234811.1 148260684 5160289 complement(1864451..1867078) 1 NC_009484.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 1867078 5160289 Acry_1687 Acidiphilium cryptum JF-5 1A family penicillin-binding protein YP_001234811.1 1864451 R 349163 CDS YP_001234812.1 148260685 5161909 1867455..1868321 1 NC_009484.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1868321 5161909 Acry_1688 Acidiphilium cryptum JF-5 FkbM family methyltransferase YP_001234812.1 1867455 D 349163 CDS YP_001234813.1 148260686 5160286 1868465..1869271 1 NC_009484.1 PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase 1869271 5160286 Acry_1689 Acidiphilium cryptum JF-5 HpcH/HpaI aldolase YP_001234813.1 1868465 D 349163 CDS YP_001234814.1 148260687 5160287 1869360..1870364 1 NC_009484.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 1870364 5160287 Acry_1690 Acidiphilium cryptum JF-5 TRAP dicarboxylate transporter subunit DctP YP_001234814.1 1869360 D 349163 CDS YP_001234815.1 148260688 5160447 1870519..1872216 1 NC_009484.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 1872216 5160447 Acry_1691 Acidiphilium cryptum JF-5 TRAP C4-dicarboxylate transport system permease DctM YP_001234815.1 1870519 D 349163 CDS YP_001234816.1 148260689 5160491 1872244..1872993 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1872993 5160491 Acry_1692 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234816.1 1872244 D 349163 CDS YP_001234817.1 148260690 5160492 complement(1873101..1874249) 1 NC_009484.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1874249 5160492 Acry_1693 Acidiphilium cryptum JF-5 coproporphyrinogen III oxidase YP_001234817.1 1873101 R 349163 CDS YP_001234818.1 148260691 5160960 1874451..1875221 1 NC_009484.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1875221 rpsB 5160960 rpsB Acidiphilium cryptum JF-5 30S ribosomal protein S2 YP_001234818.1 1874451 D 349163 CDS YP_001234819.1 148260692 5161228 1875294..1876199 1 NC_009484.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1876199 tsf 5161228 tsf Acidiphilium cryptum JF-5 elongation factor Ts YP_001234819.1 1875294 D 349163 CDS YP_001234820.1 148260693 5161900 complement(1876873..1878648) 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 1878648 5161900 Acry_1697 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001234820.1 1876873 R 349163 CDS YP_001234821.1 148260694 5161813 1878842..1879243 1 NC_009484.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1879243 5161813 Acry_1698 Acidiphilium cryptum JF-5 glutathione-dependent formaldehyde-activating protein YP_001234821.1 1878842 D 349163 CDS YP_001234822.1 148260695 5162193 1879468..1881201 1 NC_009484.1 hypothetical protein 1881201 5162193 Acry_1699 Acidiphilium cryptum JF-5 hypothetical protein YP_001234822.1 1879468 D 349163 CDS YP_001234823.1 148260696 5162194 complement(1881282..1884797) 1 NC_009484.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase 1884797 5162194 Acry_1700 Acidiphilium cryptum JF-5 methionine synthase YP_001234823.1 1881282 R 349163 CDS YP_001234824.1 148260697 5162460 1884875..1885867 1 NC_009484.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1885867 5162460 Acry_1701 Acidiphilium cryptum JF-5 hypothetical protein YP_001234824.1 1884875 D 349163 CDS YP_001234825.1 148260698 5161965 complement(1885849..1886613) 1 NC_009484.1 PFAM: protein of unknown function DUF81; hypothetical protein 1886613 5161965 Acry_1702 Acidiphilium cryptum JF-5 hypothetical protein YP_001234825.1 1885849 R 349163 CDS YP_001234826.1 148260699 5161966 1886749..1887192 1 NC_009484.1 hypothetical protein 1887192 5161966 Acry_1703 Acidiphilium cryptum JF-5 hypothetical protein YP_001234826.1 1886749 D 349163 CDS YP_001234827.1 148260700 5161065 1887349..1887666 1 NC_009484.1 hypothetical protein 1887666 5161065 Acry_1704 Acidiphilium cryptum JF-5 hypothetical protein YP_001234827.1 1887349 D 349163 CDS YP_001234828.1 148260701 5162582 1887663..1888214 1 NC_009484.1 hypothetical protein 1888214 5162582 Acry_1705 Acidiphilium cryptum JF-5 hypothetical protein YP_001234828.1 1887663 D 349163 CDS YP_001234829.1 148260702 5162583 1888251..1888817 1 NC_009484.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1888817 5162583 Acry_1706 Acidiphilium cryptum JF-5 elongation factor P YP_001234829.1 1888251 D 349163 CDS YP_001234830.1 148260703 5160360 1888872..1889699 1 NC_009484.1 PFAM: inositol monophosphatase; inositol-phosphate phosphatase 1889699 5160360 Acry_1707 Acidiphilium cryptum JF-5 inositol-phosphate phosphatase YP_001234830.1 1888872 D 349163 CDS YP_001234831.1 148260704 5160062 1889738..1890373 1 NC_009484.1 hypothetical protein 1890373 5160062 Acry_1708 Acidiphilium cryptum JF-5 hypothetical protein YP_001234831.1 1889738 D 349163 CDS YP_001234832.1 148260705 5160063 1890387..1891520 1 NC_009484.1 hypothetical protein 1891520 5160063 Acry_1709 Acidiphilium cryptum JF-5 hypothetical protein YP_001234832.1 1890387 D 349163 CDS YP_001234833.1 148260706 5162527 1891524..1892552 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1892552 5162527 Acry_1710 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001234833.1 1891524 D 349163 CDS YP_001234834.1 148260707 5162505 complement(1892569..1894437) 1 NC_009484.1 TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; cobalt chelatase large subunit 1894437 5162505 Acry_1711 Acidiphilium cryptum JF-5 cobalt chelatase large subunit YP_001234834.1 1892569 R 349163 CDS YP_001234835.1 148260708 5162506 complement(1894437..1895453) 1 NC_009484.1 TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; cobalt chelatase small subunit 1895453 5162506 Acry_1712 Acidiphilium cryptum JF-5 cobalt chelatase small subunit YP_001234835.1 1894437 R 349163 CDS YP_001234836.1 148260709 5160689 complement(1895516..1896079) 1 NC_009484.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1896079 5160689 Acry_1713 Acidiphilium cryptum JF-5 heat shock protein DnaJ domain-containing protein YP_001234836.1 1895516 R 349163 CDS YP_001234837.1 148260710 5160440 1896099..1897715 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1897715 5160440 Acry_1714 Acidiphilium cryptum JF-5 major facilitator transporter YP_001234837.1 1896099 D 349163 CDS YP_001234838.1 148260711 5160441 complement(1897687..1898481) 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1898481 5160441 Acry_1715 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001234838.1 1897687 R 349163 CDS YP_001234839.1 148260712 5161671 1898571..1899518 1 NC_009484.1 PFAM: peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 1899518 5161671 Acry_1716 Acidiphilium cryptum JF-5 peptidase T2, asparaginase 2 YP_001234839.1 1898571 D 349163 CDS YP_001234840.1 148260713 5161283 1899595..1900638 1 NC_009484.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1900638 5161283 Acry_1717 Acidiphilium cryptum JF-5 aspartate-semialdehyde dehydrogenase YP_001234840.1 1899595 D 349163 CDS YP_001234841.1 148260714 5161901 1900798..1901388 1 NC_009484.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 1901388 5161901 Acry_1718 Acidiphilium cryptum JF-5 molybdopterin-guanine dinucleotide biosynthesis protein A YP_001234841.1 1900798 D 349163 CDS YP_001234842.1 148260715 5162556 1901382..1902020 1 NC_009484.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 1902020 5162556 Acry_1719 Acidiphilium cryptum JF-5 multiple antibiotic resistance (MarC)-like protein YP_001234842.1 1901382 D 349163 CDS YP_001234843.1 148260716 5161309 1902116..1902457 1 NC_009484.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; integration host factor subunit beta 1902457 5161309 Acry_1720 Acidiphilium cryptum JF-5 integration host factor subunit beta YP_001234843.1 1902116 D 349163 CDS YP_001234844.1 148260717 5161310 1902775..1903479 1 NC_009484.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1903479 5161310 Acry_1721 Acidiphilium cryptum JF-5 orotidine 5'-phosphate decarboxylase YP_001234844.1 1902775 D 349163 CDS YP_001234845.1 148260718 5159940 1903479..1904096 1 NC_009484.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 1904096 5159940 Acry_1722 Acidiphilium cryptum JF-5 phosphoribosylanthranilate isomerase YP_001234845.1 1903479 D 349163 CDS YP_001234846.1 148260719 5159646 complement(1904125..1904952) 1 NC_009484.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 1904952 5159646 Acry_1723 Acidiphilium cryptum JF-5 formamidopyrimidine-DNA glycosylase YP_001234846.1 1904125 R 349163 CDS YP_001234847.1 148260720 5159647 1904981..1905730 1 NC_009484.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; ubiquinone/menaquinone biosynthesis methyltransferase 1905730 5159647 Acry_1724 Acidiphilium cryptum JF-5 ubiquinone/menaquinone biosynthesis methyltransferase YP_001234847.1 1904981 D 349163 CDS YP_001234848.1 148260721 5162363 1905727..1906926 1 NC_009484.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1906926 5162363 Acry_1725 Acidiphilium cryptum JF-5 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001234848.1 1905727 D 349163 CDS YP_001234849.1 148260722 5162364 1906923..1907387 1 NC_009484.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1907387 dut 5162364 dut Acidiphilium cryptum JF-5 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001234849.1 1906923 D 349163 CDS YP_001234850.1 148260723 5161476 complement(1907384..1908181) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1908181 5161476 Acry_1727 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234850.1 1907384 R 349163 CDS YP_001234851.1 148260724 5162288 complement(1908178..1909719) 1 NC_009484.1 PFAM: deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 1909719 5162288 Acry_1728 Acidiphilium cryptum JF-5 deoxyribodipyrimidine photolyase-like protein YP_001234851.1 1908178 R 349163 CDS YP_001234852.1 148260725 5162289 complement(1909719..1910357) 1 NC_009484.1 hypothetical protein 1910357 5162289 Acry_1729 Acidiphilium cryptum JF-5 hypothetical protein YP_001234852.1 1909719 R 349163 CDS YP_001234853.1 148260726 5162121 1910525..1911043 1 NC_009484.1 PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 1911043 5162121 Acry_1730 Acidiphilium cryptum JF-5 putative phosphohistidine phosphatase SixA YP_001234853.1 1910525 D 349163 CDS YP_001234854.1 148260727 5162052 1911187..1912506 1 NC_009484.1 TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 1912506 5162052 Acry_1731 Acidiphilium cryptum JF-5 citrate synthase I YP_001234854.1 1911187 D 349163 CDS YP_001234855.1 148260728 5162053 1912609..1912956 1 NC_009484.1 PFAM: regulatory protein, ArsR; regulatory protein ArsR 1912956 5162053 Acry_1732 Acidiphilium cryptum JF-5 regulatory protein ArsR YP_001234855.1 1912609 D 349163 CDS YP_001234856.1 148260729 5162156 1912987..1914054 1 NC_009484.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1914054 5162156 Acry_1733 Acidiphilium cryptum JF-5 NADH:flavin oxidoreductase YP_001234856.1 1912987 D 349163 CDS YP_001234857.1 148260730 5162198 1914116..1914859 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1914859 5162198 Acry_1734 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234857.1 1914116 D 349163 CDS YP_001234858.1 148260731 5162199 complement(1914974..1915714) 1 NC_009484.1 PFAM: protein of unknown function DUF1555; hypothetical protein 1915714 5162199 Acry_1735 Acidiphilium cryptum JF-5 hypothetical protein YP_001234858.1 1914974 R 349163 CDS YP_001234859.1 148260732 5162228 1915878..1916132 1 NC_009484.1 hypothetical protein 1916132 5162228 Acry_1736 Acidiphilium cryptum JF-5 hypothetical protein YP_001234859.1 1915878 D 349163 CDS YP_001234860.1 148260733 5162215 1916129..1916830 1 NC_009484.1 hypothetical protein 1916830 5162215 Acry_1737 Acidiphilium cryptum JF-5 hypothetical protein YP_001234860.1 1916129 D 349163 CDS YP_001234861.1 148260734 5162216 complement(1916846..1917649) 1 NC_009484.1 PFAM: regulatory protein, LuxR; response regulator receiver protein 1917649 5162216 Acry_1738 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001234861.1 1916846 R 349163 CDS YP_001234862.1 148260735 5161705 complement(1917922..1918362) 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 1918362 5161705 Acry_1739 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001234862.1 1917922 R 349163 CDS YP_001234863.1 148260736 5161565 complement(1918415..1919203) 1 NC_009484.1 hypothetical protein 1919203 5161565 Acry_1740 Acidiphilium cryptum JF-5 hypothetical protein YP_001234863.1 1918415 R 349163 CDS YP_001234864.1 148260737 5161566 complement(1919196..1920908) 1 NC_009484.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1920908 5161566 Acry_1741 Acidiphilium cryptum JF-5 Pyrrolo-quinoline quinone YP_001234864.1 1919196 R 349163 CDS YP_001234865.1 148260738 5160013 complement(1920971..1921333) 1 NC_009484.1 PFAM: protein of unknown function DUF779; hypothetical protein 1921333 5160013 Acry_1742 Acidiphilium cryptum JF-5 hypothetical protein YP_001234865.1 1920971 R 349163 CDS YP_001234866.1 148260739 5161853 complement(1921363..1922895) 1 NC_009484.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 1922895 5161853 Acry_1743 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001234866.1 1921363 R 349163 CDS YP_001234867.1 148260740 5161854 1923192..1925150 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 1925150 5161854 Acry_1744 Acidiphilium cryptum JF-5 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001234867.1 1923192 D 349163 CDS YP_001234868.1 148260741 5161557 complement(1925167..1926537) 1 NC_009484.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 1926537 5161557 Acry_1745 Acidiphilium cryptum JF-5 N-formimino-L-glutamate deiminase YP_001234868.1 1925167 R 349163 CDS YP_001234869.1 148260742 5161989 1926620..1927825 1 NC_009484.1 TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; imidazolonepropionase 1927825 5161989 Acry_1746 Acidiphilium cryptum JF-5 imidazolonepropionase YP_001234869.1 1926620 D 349163 CDS YP_001234870.1 148260743 5161990 1927822..1929348 1 NC_009484.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1929348 5161990 Acry_1747 Acidiphilium cryptum JF-5 histidine ammonia-lyase YP_001234870.1 1927822 D 349163 CDS YP_001234871.1 148260744 5162268 1929345..1930178 1 NC_009484.1 PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1930178 5162268 Acry_1748 Acidiphilium cryptum JF-5 N-formylglutamate amidohydrolase YP_001234871.1 1929345 D 349163 CDS YP_001234872.1 148260745 5159966 1930184..1931854 1 NC_009484.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1931854 5159966 Acry_1749 Acidiphilium cryptum JF-5 urocanate hydratase YP_001234872.1 1930184 D 349163 CDS YP_001234873.1 148260746 5159967 complement(1931858..1932622) 1 NC_009484.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 1932622 5159967 Acry_1750 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001234873.1 1931858 R 349163 CDS YP_001234874.1 148260747 5161214 complement(1932625..1933518) 1 NC_009484.1 PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1933518 5161214 Acry_1751 Acidiphilium cryptum JF-5 N-formylglutamate amidohydrolase YP_001234874.1 1932625 R 349163 CDS YP_001234875.1 148260748 5161645 1933600..1933944 1 NC_009484.1 PFAM: protein of unknown function DUF74; hypothetical protein 1933944 5161645 Acry_1752 Acidiphilium cryptum JF-5 hypothetical protein YP_001234875.1 1933600 D 349163 CDS YP_001234876.1 148260749 5161646 complement(1933945..1934355) 1 NC_009484.1 hypothetical protein 1934355 5161646 Acry_1753 Acidiphilium cryptum JF-5 hypothetical protein YP_001234876.1 1933945 R 349163 CDS YP_001234877.1 148260750 5162367 complement(1934517..1937951) 1 NC_009484.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 1937951 5162367 Acry_1754 Acidiphilium cryptum JF-5 transcription-repair coupling factor YP_001234877.1 1934517 R 349163 CDS YP_001234878.1 148260751 5161859 1938191..1940362 1 NC_009484.1 PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1940362 5161859 Acry_1756 Acidiphilium cryptum JF-5 DEAD/DEAH box helicase YP_001234878.1 1938191 D 349163 CDS YP_001234879.1 148260752 5162579 1940359..1940793 1 NC_009484.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 1940793 5162579 Acry_1757 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001234879.1 1940359 D 349163 CDS YP_001234880.1 148260753 5162100 complement(1940786..1941763) 1 NC_009484.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 1941763 5162100 Acry_1758 Acidiphilium cryptum JF-5 putative sulfite oxidase subunit YedY YP_001234880.1 1940786 R 349163 CDS YP_001234881.1 148260754 5160321 1941863..1942645 1 NC_009484.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1942645 mazG 5160321 mazG Acidiphilium cryptum JF-5 nucleoside triphosphate pyrophosphohydrolase YP_001234881.1 1941863 D 349163 CDS YP_001234882.1 148260755 5160322 complement(1942680..1943513) 1 NC_009484.1 PFAM: inositol monophosphatase; inositol monophosphatase 1943513 5160322 Acry_1760 Acidiphilium cryptum JF-5 inositol monophosphatase YP_001234882.1 1942680 R 349163 CDS YP_001234883.1 148260756 5161157 complement(1943537..1944844) 1 NC_009484.1 PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 1944844 5161157 Acry_1761 Acidiphilium cryptum JF-5 HSR1-like GTP-binding protein YP_001234883.1 1943537 R 349163 CDS YP_001234884.1 148260757 5162271 complement(1944851..1945378) 1 NC_009484.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; RNA chaperone Hfq 1945378 5162271 Acry_1762 Acidiphilium cryptum JF-5 RNA chaperone Hfq YP_001234884.1 1944851 R 349163 CDS YP_001234885.1 148260758 5162272 complement(1945426..1946976) 1 NC_009484.1 hypothetical protein 1946976 5162272 Acry_1763 Acidiphilium cryptum JF-5 hypothetical protein YP_001234885.1 1945426 R 349163 CDS YP_001234886.1 148260759 5161789 complement(1947117..1948154) 1 NC_009484.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1948154 mnmA 5161789 mnmA Acidiphilium cryptum JF-5 tRNA-specific 2-thiouridylase MnmA YP_001234886.1 1947117 R 349163 CDS YP_001234887.1 148260760 5161907 complement(1948159..1948491) 1 NC_009484.1 PFAM: ferredoxin; ferredoxin 1948491 5161907 Acry_1765 Acidiphilium cryptum JF-5 ferredoxin YP_001234887.1 1948159 R 349163 CDS YP_001234888.1 148260761 5161908 complement(1948546..1949688) 1 NC_009484.1 PFAM: aminotransferase, class V; class V aminotransferase 1949688 5161908 Acry_1766 Acidiphilium cryptum JF-5 class V aminotransferase YP_001234888.1 1948546 R 349163 CDS YP_001234889.1 148260762 5161834 complement(1949675..1950442) 1 NC_009484.1 TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase 1950442 5161834 Acry_1767 Acidiphilium cryptum JF-5 serine O-acetyltransferase YP_001234889.1 1949675 R 349163 CDS YP_001234890.1 148260763 5160819 1950885..1951550 1 NC_009484.1 alpha/beta fold family hydrolase-like protein 1951550 5160819 Acry_1768 Acidiphilium cryptum JF-5 alpha/beta fold family hydrolase-like protein YP_001234890.1 1950885 D 349163 CDS YP_001234891.1 148260764 5160820 complement(1951607..1952404) 1 NC_009484.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 1952404 5160820 Acry_1769 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001234891.1 1951607 R 349163 CDS YP_001234892.1 148260765 5161738 complement(1952645..1953094) 1 NC_009484.1 PFAM: ROSMUCR transcriptional regulator; MucR family transcriptional regulator 1953094 5161738 Acry_1770 Acidiphilium cryptum JF-5 MucR family transcriptional regulator YP_001234892.1 1952645 R 349163 CDS YP_001234893.1 148260766 5161792 1953254..1953517 1 NC_009484.1 PFAM: SirA family protein; SirA family protein 1953517 5161792 Acry_1771 Acidiphilium cryptum JF-5 SirA family protein YP_001234893.1 1953254 D 349163 CDS YP_001234894.1 148260767 5161793 complement(1953486..1953932) 1 NC_009484.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 1953932 5161793 Acry_1772 Acidiphilium cryptum JF-5 ribosomal-protein-alanine acetyltransferase YP_001234894.1 1953486 R 349163 CDS YP_001234895.1 148260768 5161786 complement(1953929..1954600) 1 NC_009484.1 PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease 1954600 5161786 Acry_1773 Acidiphilium cryptum JF-5 peptidase M22, glycoprotease YP_001234895.1 1953929 R 349163 CDS YP_001234896.1 148260769 5161573 complement(1954602..1955186) 1 NC_009484.1 PFAM: nitroreductase; hypothetical protein 1955186 5161573 Acry_1774 Acidiphilium cryptum JF-5 hypothetical protein YP_001234896.1 1954602 R 349163 CDS YP_001234897.1 148260770 5161574 complement(1955229..1955786) 1 NC_009484.1 PFAM: nitrogen-fixing NifU domain protein; NifU domain-containing protein 1955786 5161574 Acry_1775 Acidiphilium cryptum JF-5 NifU domain-containing protein YP_001234897.1 1955229 R 349163 CDS YP_001234898.1 148260771 5161411 1955991..1956497 1 NC_009484.1 hypothetical protein 1956497 5161411 Acry_1776 Acidiphilium cryptum JF-5 hypothetical protein YP_001234898.1 1955991 D 349163 CDS YP_001234899.1 148260772 5161577 complement(1956507..1957214) 1 NC_009484.1 PFAM: Methyltransferase type 11; type 11 methyltransferase 1957214 5161577 Acry_1777 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001234899.1 1956507 R 349163 CDS YP_001234900.1 148260773 5161578 1957248..1957979 1 NC_009484.1 PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 1957979 5161578 Acry_1778 Acidiphilium cryptum JF-5 hydroxyacylglutathione hydrolase YP_001234900.1 1957248 D 349163 CDS YP_001234901.1 148260774 5161514 complement(1958065..1959960) 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1959960 5161514 Acry_1779 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001234901.1 1958065 R 349163 CDS YP_001234902.1 148260775 5161860 1960352..1961014 1 NC_009484.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1961014 5161860 Acry_1780 Acidiphilium cryptum JF-5 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001234902.1 1960352 D 349163 CDS YP_001234903.1 148260776 5161493 1961064..1962617 1 NC_009484.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1962617 5161493 Acry_1781 Acidiphilium cryptum JF-5 TolC family type I secretion outer membrane protein YP_001234903.1 1961064 D 349163 CDS YP_001234904.1 148260777 5161524 1962614..1963171 1 NC_009484.1 hypothetical protein 1963171 5161524 Acry_1782 Acidiphilium cryptum JF-5 hypothetical protein YP_001234904.1 1962614 D 349163 CDS YP_001234905.1 148260778 5159995 1963330..1966005 1 NC_009484.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1966005 valS 5159995 valS Acidiphilium cryptum JF-5 valyl-tRNA synthetase YP_001234905.1 1963330 D 349163 CDS YP_001234906.1 148260779 5159996 1966078..1966908 1 NC_009484.1 PFAM: band 7 protein; hypothetical protein 1966908 5159996 Acry_1784 Acidiphilium cryptum JF-5 hypothetical protein YP_001234906.1 1966078 D 349163 CDS YP_001234907.1 148260780 5160198 complement(1967004..1968332) 1 NC_009484.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 1968332 5160198 Acry_1785 Acidiphilium cryptum JF-5 C69 family peptidase YP_001234907.1 1967004 R 349163 CDS YP_001234908.1 148260781 5161658 complement(1968329..1969594) 1 NC_009484.1 PFAM: peptidase M16 domain protein; processing peptidase 1969594 5161658 Acry_1786 Acidiphilium cryptum JF-5 processing peptidase YP_001234908.1 1968329 R 349163 CDS YP_001234909.1 148260782 5161659 complement(1969591..1970994) 1 NC_009484.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1970994 5161659 Acry_1787 Acidiphilium cryptum JF-5 threonine synthase YP_001234909.1 1969591 R 349163 CDS YP_001234910.1 148260783 5162588 complement(1971057..1971557) 1 NC_009484.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1971557 5162588 Acry_1788 Acidiphilium cryptum JF-5 preprotein translocase subunit SecB YP_001234910.1 1971057 R 349163 CDS YP_001234911.1 148260784 5161196 1971641..1972591 1 NC_009484.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 1972591 5161196 Acry_1789 Acidiphilium cryptum JF-5 N-acetyl-gamma-glutamyl-phosphate reductase YP_001234911.1 1971641 D 349163 CDS YP_001234912.1 148260785 5161197 1972647..1973195 1 NC_009484.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; 2'-5' RNA ligase 1973195 5161197 Acry_1790 Acidiphilium cryptum JF-5 2'-5' RNA ligase YP_001234912.1 1972647 D 349163 CDS YP_001234913.1 148260786 5161674 complement(1973308..1974834) 1 NC_009484.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1974834 5161674 Acry_1791 Acidiphilium cryptum JF-5 methylmalonate-semialdehyde dehydrogenase YP_001234913.1 1973308 R 349163 CDS YP_001234914.1 148260787 5161803 1974920..1975807 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1975807 5161803 Acry_1792 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001234914.1 1974920 D 349163 CDS YP_001234915.1 148260788 5161804 complement(1975868..1976359) 1 NC_009484.1 hypothetical protein 1976359 5161804 Acry_1793 Acidiphilium cryptum JF-5 hypothetical protein YP_001234915.1 1975868 R 349163 CDS YP_001234916.1 148260789 5162245 1976383..1977435 1 NC_009484.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 1977435 5162245 Acry_1794 Acidiphilium cryptum JF-5 secretion protein HlyD family protein YP_001234916.1 1976383 D 349163 CDS YP_001234917.1 148260790 5159602 1977422..1979158 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1979158 5159602 Acry_1795 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234917.1 1977422 D 349163 CDS YP_001234918.1 148260791 5159603 1979155..1980279 1 NC_009484.1 PFAM: ABC-2 type transporter; ABC-2 type transporter 1980279 5159603 Acry_1796 Acidiphilium cryptum JF-5 ABC-2 type transporter YP_001234918.1 1979155 D 349163 CDS YP_001234919.1 148260792 5160200 1980285..1981391 1 NC_009484.1 PFAM: ABC-2 type transporter; ABC-2 type transporter 1981391 5160200 Acry_1797 Acidiphilium cryptum JF-5 ABC-2 type transporter YP_001234919.1 1980285 D 349163 CDS YP_001234920.1 148260793 5159658 1981545..1983218 1 NC_009484.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1983218 5159658 Acry_1798 Acidiphilium cryptum JF-5 hydroxylamine reductase YP_001234920.1 1981545 D 349163 CDS YP_001234921.1 148260794 5159659 1983295..1984305 1 NC_009484.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1984305 5159659 Acry_1799 Acidiphilium cryptum JF-5 oxidoreductase FAD-binding subunit YP_001234921.1 1983295 D 349163 CDS YP_001234922.1 148260795 5159542 1984337..1984789 1 NC_009484.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 1984789 5159542 Acry_1800 Acidiphilium cryptum JF-5 BadM/Rrf2 family transcriptional regulator YP_001234922.1 1984337 D 349163 CDS YP_001234923.1 148260796 5159531 complement(1984945..1986075) 1 NC_009484.1 cellulose biosynthesis protein CelD 1986075 5159531 Acry_1801 Acidiphilium cryptum JF-5 cellulose biosynthesis protein CelD YP_001234923.1 1984945 R 349163 CDS YP_001234924.1 148260797 5159532 1986113..1987153 1 NC_009484.1 hypothetical protein 1987153 5159532 Acry_1802 Acidiphilium cryptum JF-5 hypothetical protein YP_001234924.1 1986113 D 349163 CDS YP_001234925.1 148260798 5159650 1987153..1988382 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1988382 5159650 Acry_1803 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001234925.1 1987153 D 349163 CDS YP_001234926.1 148260799 5159524 1988400..1989440 1 NC_009484.1 hypothetical protein 1989440 5159524 Acry_1804 Acidiphilium cryptum JF-5 hypothetical protein YP_001234926.1 1988400 D 349163 CDS YP_001234927.1 148260800 5159525 1989437..1990555 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1990555 5159525 Acry_1805 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001234927.1 1989437 D 349163 CDS YP_001234928.1 148260801 5160079 1990552..1990971 1 NC_009484.1 hypothetical protein 1990971 5160079 Acry_1806 Acidiphilium cryptum JF-5 hypothetical protein YP_001234928.1 1990552 D 349163 CDS YP_001234929.1 148260802 5161899 complement(1991304..1992266) 1 NC_009484.1 TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 1992266 5161899 Acry_1808 Acidiphilium cryptum JF-5 CRISPR-associated Cas1 family protein YP_001234929.1 1991304 R 349163 CDS YP_001234930.1 148260803 5159681 complement(1992259..1992945) 1 NC_009484.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein, CT1974; CRISPR-associated Cse3 family protein 1992945 5159681 Acry_1809 Acidiphilium cryptum JF-5 CRISPR-associated Cse3 family protein YP_001234930.1 1992259 R 349163 CDS YP_001234931.1 148260804 5159552 complement(1992942..1993691) 1 NC_009484.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; CRISPR-associated Cas5 family protein 1993691 5159552 Acry_1810 Acidiphilium cryptum JF-5 CRISPR-associated Cas5 family protein YP_001234931.1 1992942 R 349163 CDS YP_001234932.1 148260805 5160617 complement(1993693..1994805) 1 NC_009484.1 TIGRFAM: CRISPR-associated protein, Cse4 family; CRISPR-associated Cse4 family protein 1994805 5160617 Acry_1811 Acidiphilium cryptum JF-5 CRISPR-associated Cse4 family protein YP_001234932.1 1993693 R 349163 CDS YP_001234933.1 148260806 5160618 complement(1994805..1995344) 1 NC_009484.1 hypothetical protein 1995344 5160618 Acry_1812 Acidiphilium cryptum JF-5 hypothetical protein YP_001234933.1 1994805 R 349163 CDS YP_001234934.1 148260807 5159744 complement(1995341..1996930) 1 NC_009484.1 TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated Cse1 family protein 1996930 5159744 Acry_1813 Acidiphilium cryptum JF-5 CRISPR-associated Cse1 family protein YP_001234934.1 1995341 R 349163 CDS YP_001234935.1 148260808 5160032 complement(1997220..1999325) 1 NC_009484.1 TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; CRISPR-associated helicase Cas3 1999325 5160032 Acry_1814 Acidiphilium cryptum JF-5 CRISPR-associated helicase Cas3 YP_001234935.1 1997220 R 349163 CDS YP_001234936.1 148260809 5160033 complement(2000148..2000456) 1 NC_009484.1 hypothetical protein 2000456 5160033 Acry_1815 Acidiphilium cryptum JF-5 hypothetical protein YP_001234936.1 2000148 R 349163 CDS YP_001234937.1 148260810 5159937 complement(2000602..2002374) 1 NC_009484.1 PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; ATPase central domain-containing protein 2002374 5159937 Acry_1816 Acidiphilium cryptum JF-5 ATPase central domain-containing protein YP_001234937.1 2000602 R 349163 CDS YP_001234938.1 148260811 5159934 complement(2002595..2003308) 1 NC_009484.1 hypothetical protein 2003308 5159934 Acry_1817 Acidiphilium cryptum JF-5 hypothetical protein YP_001234938.1 2002595 R 349163 CDS YP_001234939.1 148260812 5159935 2003548..2003775 1 NC_009484.1 hypothetical protein 2003775 5159935 Acry_1818 Acidiphilium cryptum JF-5 hypothetical protein YP_001234939.1 2003548 D 349163 CDS YP_001234940.1 148260813 5160259 complement(2003885..2004370) 1 NC_009484.1 hypothetical protein 2004370 5160259 Acry_1819 Acidiphilium cryptum JF-5 hypothetical protein YP_001234940.1 2003885 R 349163 CDS YP_001234941.1 148260814 5160235 complement(2004619..2004942) 1 NC_009484.1 hypothetical protein 2004942 5160235 Acry_1820 Acidiphilium cryptum JF-5 hypothetical protein YP_001234941.1 2004619 R 349163 CDS YP_001234942.1 148260815 5160236 complement(2005182..2005508) 1 NC_009484.1 PFAM: NIPSNAP family containing protein; NIPSNAP family protein 2005508 5160236 Acry_1821 Acidiphilium cryptum JF-5 NIPSNAP family protein YP_001234942.1 2005182 R 349163 CDS YP_001234943.1 148260816 5159910 2005755..2007485 1 NC_009484.1 PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 2007485 5159910 Acry_1822 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001234943.1 2005755 D 349163 CDS YP_001234944.1 148260817 5162263 complement(2013473..2016055) 1 NC_009484.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2016055 5162263 Acry_1823 Acidiphilium cryptum JF-5 ATPase YP_001234944.1 2013473 R 349163 CDS YP_001234945.1 148260818 5160647 2016173..2016934 1 NC_009484.1 PFAM: MOSC domain containing protein; MOSC domain-containing protein 2016934 5160647 Acry_1824 Acidiphilium cryptum JF-5 MOSC domain-containing protein YP_001234945.1 2016173 D 349163 CDS YP_001234946.1 148260819 5159715 2016985..2017569 1 NC_009484.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2017569 5159715 Acry_1825 Acidiphilium cryptum JF-5 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001234946.1 2016985 D 349163 CDS YP_001234947.1 148260820 5159879 2017577..2018116 1 NC_009484.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2018116 5159879 Acry_1826 Acidiphilium cryptum JF-5 molybdopterin-guanine dinucleotide biosynthesis protein B YP_001234947.1 2017577 D 349163 CDS YP_001234948.1 148260821 5159880 2018170..2018940 1 NC_009484.1 hypothetical protein 2018940 5159880 Acry_1827 Acidiphilium cryptum JF-5 hypothetical protein YP_001234948.1 2018170 D 349163 CDS YP_001234949.1 148260822 5159481 2018972..2019223 1 NC_009484.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 2019223 5159481 Acry_1828 Acidiphilium cryptum JF-5 molybdopterin converting factor subunit 1 YP_001234949.1 2018972 D 349163 CDS YP_001234950.1 148260823 5160131 2019220..2019678 1 NC_009484.1 PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis MoaE protein 2019678 5160131 Acry_1829 Acidiphilium cryptum JF-5 molybdopterin biosynthesis MoaE protein YP_001234950.1 2019220 D 349163 CDS YP_001234951.1 148260824 5160132 2019963..2020715 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2020715 5160132 Acry_1830 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001234951.1 2019963 D 349163 CDS YP_001234952.1 148260825 5159918 complement(2020749..2021900) 1 NC_009484.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2021900 5159918 Acry_1831 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001234952.1 2020749 R 349163 CDS YP_001234953.1 148260826 5160111 complement(2021940..2022923) 1 NC_009484.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2022923 5160111 Acry_1832 Acidiphilium cryptum JF-5 hydroxymethylbutenyl pyrophosphate reductase YP_001234953.1 2021940 R 349163 CDS YP_001234954.1 148260827 5160112 2023304..2025247 1 NC_009484.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2025247 5160112 Acry_1833 Acidiphilium cryptum JF-5 1-deoxy-D-xylulose-5-phosphate synthase YP_001234954.1 2023304 D 349163 CDS YP_001234955.1 148260828 5160212 2025244..2025891 1 NC_009484.1 PFAM: toluene tolerance family protein; toluene tolerance family protein 2025891 5160212 Acry_1834 Acidiphilium cryptum JF-5 toluene tolerance family protein YP_001234955.1 2025244 D 349163 CDS YP_001234956.1 148260829 5159796 2025893..2027086 1 NC_009484.1 cell wall biosynthesis glycosyltransferase-like protein 2027086 5159796 Acry_1835 Acidiphilium cryptum JF-5 cell wall biosynthesis glycosyltransferase-like protein YP_001234956.1 2025893 D 349163 CDS YP_001234957.1 148260830 5159797 2027097..2028521 1 NC_009484.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2028521 5159797 Acry_1836 Acidiphilium cryptum JF-5 radical SAM domain-containing protein YP_001234957.1 2027097 D 349163 CDS YP_001234958.1 148260831 5159969 2028543..2029346 1 NC_009484.1 PFAM: YdjC family protein; hypothetical protein 2029346 5159969 Acry_1837 Acidiphilium cryptum JF-5 hypothetical protein YP_001234958.1 2028543 D 349163 CDS YP_001234959.1 148260832 5159851 2029506..2031167 1 NC_009484.1 hypothetical protein 2031167 5159851 Acry_1838 Acidiphilium cryptum JF-5 hypothetical protein YP_001234959.1 2029506 D 349163 CDS YP_001234960.1 148260833 5159852 complement(2031312..2031758) 1 NC_009484.1 PFAM: conserved hypothetical protein 701; hypothetical protein 2031758 5159852 Acry_1839 Acidiphilium cryptum JF-5 hypothetical protein YP_001234960.1 2031312 R 349163 CDS YP_001234961.1 148260834 5159990 complement(2031755..2032087) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2032087 5159990 Acry_1840 Acidiphilium cryptum JF-5 4Fe-4S ferredoxin YP_001234961.1 2031755 R 349163 CDS YP_001234962.1 148260835 5159469 complement(2032161..2032889) 1 NC_009484.1 PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; hypothetical protein 2032889 5159469 Acry_1841 Acidiphilium cryptum JF-5 hypothetical protein YP_001234962.1 2032161 R 349163 CDS YP_001234963.1 148260836 5159470 complement(2032873..2033292) 1 NC_009484.1 hypothetical protein 2033292 5159470 Acry_1842 Acidiphilium cryptum JF-5 hypothetical protein YP_001234963.1 2032873 R 349163 CDS YP_001234964.1 148260837 5160610 2033386..2033805 1 NC_009484.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 2033805 5160610 Acry_1843 Acidiphilium cryptum JF-5 BadM/Rrf2 family transcriptional regulator YP_001234964.1 2033386 D 349163 CDS YP_001234965.1 148260838 5160107 complement(2033926..2035650) 1 NC_009484.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 2035650 5160107 Acry_1844 Acidiphilium cryptum JF-5 DEAD/DEAH box helicase YP_001234965.1 2033926 R 349163 CDS YP_001234966.1 148260839 5160108 complement(2035778..2036434) 1 NC_009484.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2036434 5160108 Acry_1845 Acidiphilium cryptum JF-5 3-oxoacid CoA-transferase subunit B YP_001234966.1 2035778 R 349163 CDS YP_001234967.1 148260840 5159618 complement(2036434..2037120) 1 NC_009484.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2037120 5159618 Acry_1846 Acidiphilium cryptum JF-5 3-oxoacid CoA-transferase subunit A YP_001234967.1 2036434 R 349163 CDS YP_001234968.1 148260841 5160006 complement(2037125..2038327) 1 NC_009484.1 TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 2038327 5160006 Acry_1847 Acidiphilium cryptum JF-5 beta-ketoadipyl CoA thiolase YP_001234968.1 2037125 R 349163 CDS YP_001234969.1 148260842 5160007 complement(2038348..2038863) 1 NC_009484.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha 2038863 5160007 Acry_1848 Acidiphilium cryptum JF-5 protocatechuate 3,4-dioxygenase subunit alpha YP_001234969.1 2038348 R 349163 CDS YP_001234970.1 148260843 5160246 complement(2038873..2039577) 1 NC_009484.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta 2039577 5160246 Acry_1849 Acidiphilium cryptum JF-5 protocatechuate 3,4-dioxygenase subunit beta YP_001234970.1 2038873 R 349163 CDS YP_001234971.1 148260844 5159720 complement(2039574..2040764) 1 NC_009484.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 2040764 5159720 Acry_1850 Acidiphilium cryptum JF-5 4-hydroxybenzoate 3-monooxygenase YP_001234971.1 2039574 R 349163 CDS YP_001234972.1 148260845 5159721 2041073..2043259 1 NC_009484.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2043259 5159721 Acry_1851 Acidiphilium cryptum JF-5 catalase/peroxidase HPI YP_001234972.1 2041073 D 349163 CDS YP_001234973.1 148260846 5159907 complement(2043310..2044302) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2044302 5159907 Acry_1852 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001234973.1 2043310 R 349163 CDS YP_001234974.1 148260847 5159451 complement(2044319..2045338) 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2045338 5159451 Acry_1853 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001234974.1 2044319 R 349163 CDS YP_001234975.1 148260848 5159452 complement(2045335..2046114) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2046114 5159452 Acry_1854 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234975.1 2045335 R 349163 CDS YP_001234976.1 148260849 5159526 2046397..2047149 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2047149 5159526 Acry_1855 Acidiphilium cryptum JF-5 short chain dehydrogenase YP_001234976.1 2046397 D 349163 CDS YP_001234977.1 148260850 5159573 2047149..2047967 1 NC_009484.1 PFAM: amidohydrolase 2; amidohydrolase 2 2047967 5159573 Acry_1856 Acidiphilium cryptum JF-5 amidohydrolase 2 YP_001234977.1 2047149 D 349163 CDS YP_001234978.1 148260851 5159574 complement(2048079..2048972) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 2048972 5159574 Acry_1857 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001234978.1 2048079 R 349163 CDS YP_001234979.1 148260852 5159925 complement(2048972..2050153) 1 NC_009484.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 2050153 5159925 Acry_1858 Acidiphilium cryptum JF-5 mannonate dehydratase YP_001234979.1 2048972 R 349163 CDS YP_001234980.1 148260853 5159597 complement(2050174..2051586) 1 NC_009484.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; mannitol dehydrogenase domain-containing protein 2051586 5159597 Acry_1859 Acidiphilium cryptum JF-5 mannitol dehydrogenase domain-containing protein YP_001234980.1 2050174 R 349163 CDS YP_001234981.1 148260854 5159598 complement(2051564..2052337) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2052337 5159598 Acry_1860 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001234981.1 2051564 R 349163 CDS YP_001234982.1 148260855 5159836 2052475..2053269 1 NC_009484.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2053269 5159836 Acry_1861 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001234982.1 2052475 D 349163 CDS YP_001234983.1 148260856 5159908 2053266..2054882 1 NC_009484.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; galactarate dehydratase 2054882 5159908 Acry_1862 Acidiphilium cryptum JF-5 galactarate dehydratase YP_001234983.1 2053266 D 349163 CDS YP_001234984.1 148260857 5159909 complement(2054966..2055682) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2055682 5159909 Acry_1863 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234984.1 2054966 R 349163 CDS YP_001234985.1 148260858 5160629 complement(2055675..2057474) 1 NC_009484.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2057474 5160629 Acry_1864 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001234985.1 2055675 R 349163 CDS YP_001234986.1 148260859 5159768 complement(2057508..2058392) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 2058392 5159768 Acry_1865 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001234986.1 2057508 R 349163 CDS YP_001234987.1 148260860 5159769 complement(2058486..2059607) 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 2059607 5159769 Acry_1866 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001234987.1 2058486 R 349163 CDS YP_001234988.1 148260861 5159734 complement(2059881..2060552) 1 NC_009484.1 TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 2060552 5159734 Acry_1867 Acidiphilium cryptum JF-5 dethiobiotin synthase YP_001234988.1 2059881 R 349163 CDS YP_001234989.1 148260862 5159571 complement(2060549..2061694) 1 NC_009484.1 TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; 8-amino-7-oxononanoate synthase 2061694 5159571 Acry_1868 Acidiphilium cryptum JF-5 8-amino-7-oxononanoate synthase YP_001234989.1 2060549 R 349163 CDS YP_001234990.1 148260863 5159572 2061782..2062759 1 NC_009484.1 TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2062759 5159572 Acry_1869 Acidiphilium cryptum JF-5 biotin synthase YP_001234990.1 2061782 D 349163 CDS YP_001234991.1 148260864 5160268 2062756..2064012 1 NC_009484.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2064012 5160268 Acry_1870 Acidiphilium cryptum JF-5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001234991.1 2062756 D 349163 CDS YP_001234992.1 148260865 5160247 complement(2064033..2064605) 1 NC_009484.1 hypothetical protein 2064605 5160247 Acry_1871 Acidiphilium cryptum JF-5 hypothetical protein YP_001234992.1 2064033 R 349163 CDS YP_001234993.1 148260866 5160248 complement(2064736..2065431) 1 NC_009484.1 PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein 2065431 5160248 Acry_1872 Acidiphilium cryptum JF-5 hypothetical protein YP_001234993.1 2064736 R 349163 CDS YP_001234994.1 148260867 5160338 complement(2065607..2066419) 1 NC_009484.1 hypothetical protein 2066419 5160338 Acry_1873 Acidiphilium cryptum JF-5 hypothetical protein YP_001234994.1 2065607 R 349163 CDS YP_001234995.1 148260868 5160347 complement(2066696..2067313) 1 NC_009484.1 PFAM: cytochrome B561; cytochrome B561 2067313 5160347 Acry_1874 Acidiphilium cryptum JF-5 cytochrome B561 YP_001234995.1 2066696 R 349163 CDS YP_001234996.1 148260869 5160348 complement(2067395..2068771) 1 NC_009484.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; glutamate--cysteine ligase 2068771 5160348 Acry_1875 Acidiphilium cryptum JF-5 glutamate--cysteine ligase YP_001234996.1 2067395 R 349163 CDS YP_001234997.1 148260870 5160267 complement(2068787..2069503) 1 NC_009484.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2069503 5160267 Acry_1876 Acidiphilium cryptum JF-5 16S ribosomal RNA methyltransferase RsmE YP_001234997.1 2068787 R 349163 CDS YP_001234998.1 148260871 5162283 2069559..2070419 1 NC_009484.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 2070419 5162283 Acry_1877 Acidiphilium cryptum JF-5 4-hydroxybenzoate polyprenyltransferase YP_001234998.1 2069559 D 349163 CDS YP_001234999.1 148260872 5162284 2070416..2071060 1 NC_009484.1 methyltransferase-like protein 2071060 5162284 Acry_1878 Acidiphilium cryptum JF-5 methyltransferase-like protein YP_001234999.1 2070416 D 349163 CDS YP_001235000.1 148260873 5160059 2071151..2071582 1 NC_009484.1 PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2071582 5160059 Acry_1879 Acidiphilium cryptum JF-5 succinate dehydrogenase, cytochrome b subunit YP_001235000.1 2071151 D 349163 CDS YP_001235001.1 148260874 5160349 2071606..2071983 1 NC_009484.1 PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2071983 5160349 Acry_1880 Acidiphilium cryptum JF-5 succinate dehydrogenase, cytochrome b subunit YP_001235001.1 2071606 D 349163 CDS YP_001235002.1 148260875 5160350 2072009..2073820 1 NC_009484.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2073820 sdhA 5160350 sdhA Acidiphilium cryptum JF-5 succinate dehydrogenase flavoprotein subunit YP_001235002.1 2072009 D 349163 CDS YP_001235003.1 148260876 5160271 2073837..2074619 1 NC_009484.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2074619 sdhB 5160271 sdhB Acidiphilium cryptum JF-5 succinate dehydrogenase iron-sulfur subunit YP_001235003.1 2073837 D 349163 CDS YP_001235004.1 148260877 5159947 complement(2075234..2076883) 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 2076883 5159947 Acry_1883 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001235004.1 2075234 R 349163 CDS YP_001235005.1 148260878 5159948 complement(2076880..2077581) 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2077581 5159948 Acry_1884 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001235005.1 2076880 R 349163 CDS YP_001235006.1 148260879 5162243 2078438..2080093 1 NC_009484.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2080093 5162243 Acry_1886 Acidiphilium cryptum JF-5 phosphoenolpyruvate carboxykinase YP_001235006.1 2078438 D 349163 CDS YP_001235007.1 148260880 5160472 2080608..2081777 1 NC_009484.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2081777 5160472 Acry_1887 Acidiphilium cryptum JF-5 amidohydrolase YP_001235007.1 2080608 D 349163 CDS YP_001235008.1 148260881 5160473 2081774..2082463 1 NC_009484.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2082463 5160473 Acry_1888 Acidiphilium cryptum JF-5 multiple antibiotic resistance (MarC)-like protein YP_001235008.1 2081774 D 349163 CDS YP_001235009.1 148260882 5160377 2082578..2083126 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2083126 5160377 Acry_1889 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001235009.1 2082578 D 349163 CDS YP_001235010.1 148260883 5160667 2083126..2084232 1 NC_009484.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 2084232 5160667 Acry_1890 Acidiphilium cryptum JF-5 secretion protein HlyD family protein YP_001235010.1 2083126 D 349163 CDS YP_001235011.1 148260884 5160668 2084260..2085834 1 NC_009484.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2085834 5160668 Acry_1891 Acidiphilium cryptum JF-5 EmrB/QacA family drug resistance transporter YP_001235011.1 2084260 D 349163 CDS YP_001235012.1 148260885 5160544 complement(2085877..2086518) 1 NC_009484.1 TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 2086518 5160544 Acry_1892 Acidiphilium cryptum JF-5 uracil phosphoribosyltransferase YP_001235012.1 2085877 R 349163 CDS YP_001235013.1 148260886 5160301 complement(2086543..2087925) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2087925 5160301 Acry_1893 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001235013.1 2086543 R 349163 CDS YP_001235014.1 148260887 5160302 complement(2087939..2088913) 1 NC_009484.1 hypothetical protein 2088913 5160302 Acry_1894 Acidiphilium cryptum JF-5 hypothetical protein YP_001235014.1 2087939 R 349163 CDS YP_001235015.1 148260888 5160442 complement(2088916..2091777) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; Tetratricopeptide TPR_2 repeat protein; glycosyl transferase family protein 2091777 5160442 Acry_1895 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235015.1 2088916 R 349163 CDS YP_001235016.1 148260889 5160525 complement(2091722..2093497) 1 NC_009484.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 2093497 5160525 Acry_1896 Acidiphilium cryptum JF-5 Sel1 domain-containing protein YP_001235016.1 2091722 R 349163 CDS YP_001235017.1 148260890 5160526 complement(2093516..2094946) 1 NC_009484.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 2094946 5160526 Acry_1897 Acidiphilium cryptum JF-5 HlyD family type I secretion membrane fusion protein YP_001235017.1 2093516 R 349163 CDS YP_001235018.1 148260891 5160283 complement(2094912..2097140) 1 NC_009484.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2097140 5160283 Acry_1898 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235018.1 2094912 R 349163 CDS YP_001235019.1 148260892 5159858 2097397..2097900 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2097900 5159858 Acry_1899 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001235019.1 2097397 D 349163 CDS YP_001235020.1 148260893 5159859 complement(2097907..2098767) 1 NC_009484.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 2098767 5159859 Acry_1900 Acidiphilium cryptum JF-5 flagellar motor protein MotA YP_001235020.1 2097907 R 349163 CDS YP_001235021.1 148260894 5159630 complement(2098816..2099931) 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2099931 5159630 Acry_1901 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001235021.1 2098816 R 349163 CDS YP_001235022.1 148260895 5160487 complement(2100000..2100983) 1 NC_009484.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 2100983 5160487 Acry_1902 Acidiphilium cryptum JF-5 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_001235022.1 2100000 R 349163 CDS YP_001235023.1 148260896 5160488 complement(2100980..2102410) 1 NC_009484.1 PFAM: glycosyl transferase, family 39; glycosyl transferase family protein 2102410 5160488 Acry_1903 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235023.1 2100980 R 349163 CDS YP_001235024.1 148260897 5160557 complement(2102514..2103608) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; GtrA family protein; dolichyl-phosphate beta-D-mannosyltransferase 2103608 5160557 Acry_1904 Acidiphilium cryptum JF-5 dolichyl-phosphate beta-D-mannosyltransferase YP_001235024.1 2102514 R 349163 CDS YP_001235025.1 148260898 5160519 complement(2103619..2104104) 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 2104104 5160519 Acry_1905 Acidiphilium cryptum JF-5 redoxin domain-containing protein YP_001235025.1 2103619 R 349163 CDS YP_001235026.1 148260899 5160520 complement(2104180..2104869) 1 NC_009484.1 PFAM: oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase 2104869 5160520 Acry_1906 Acidiphilium cryptum JF-5 molybdopterin binding oxidoreductase YP_001235026.1 2104180 R 349163 CDS YP_001235027.1 148260900 5160775 complement(2104939..2105418) 1 NC_009484.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2105418 smpB 5160775 smpB Acidiphilium cryptum JF-5 SsrA-binding protein YP_001235027.1 2104939 R 349163 CDS YP_001235028.1 148260901 5160691 complement(2105418..2106296) 1 NC_009484.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2106296 5160691 Acry_1908 Acidiphilium cryptum JF-5 dihydrodipicolinate synthase YP_001235028.1 2105418 R 349163 CDS YP_001235029.1 148260902 5160692 2106388..2108421 1 NC_009484.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 2108421 5160692 Acry_1909 Acidiphilium cryptum JF-5 lytic transglycosylase YP_001235029.1 2106388 D 349163 CDS YP_001235030.1 148260903 5160572 2108403..2108885 1 NC_009484.1 PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 2108885 5160572 Acry_1910 Acidiphilium cryptum JF-5 phosphatidylglycerophosphatase A YP_001235030.1 2108403 D 349163 CDS YP_001235031.1 148260904 5160727 2108882..2109355 1 NC_009484.1 PFAM: CinA domain protein; CinA domain-containing protein 2109355 5160727 Acry_1911 Acidiphilium cryptum JF-5 CinA domain-containing protein YP_001235031.1 2108882 D 349163 CDS YP_001235032.1 148260905 5160728 2109539..2111203 1 NC_009484.1 PFAM: EAL domain protein; SMART: PAS domain containing protein; diguanylate phosphodiesterase 2111203 5160728 Acry_1912 Acidiphilium cryptum JF-5 diguanylate phosphodiesterase YP_001235032.1 2109539 D 349163 CDS YP_001235033.1 148260906 5159457 complement(2111232..2111744) 1 NC_009484.1 PFAM: Chromate transporter; chromate transporter 2111744 5159457 Acry_1913 Acidiphilium cryptum JF-5 chromate transporter YP_001235033.1 2111232 R 349163 CDS YP_001235034.1 148260907 5160711 complement(2111741..2112826) 1 NC_009484.1 PFAM: Chromate transporter; chromate transporter 2112826 5160711 Acry_1914 Acidiphilium cryptum JF-5 chromate transporter YP_001235034.1 2111741 R 349163 CDS YP_001235035.1 148260908 5160712 2112990..2114069 1 NC_009484.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate ABC transporter periplasmic phosphate-binding protein 2114069 5160712 Acry_1915 Acidiphilium cryptum JF-5 phosphate ABC transporter periplasmic phosphate-binding protein YP_001235035.1 2112990 D 349163 CDS YP_001235036.1 148260909 5160571 2114151..2115125 1 NC_009484.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter inner membrane subunit PstC 2115125 5160571 Acry_1916 Acidiphilium cryptum JF-5 phosphate ABC transporter inner membrane subunit PstC YP_001235036.1 2114151 D 349163 CDS YP_001235037.1 148260910 5160773 2115109..2115978 1 NC_009484.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2115978 5160773 Acry_1917 Acidiphilium cryptum JF-5 phosphate ABC transporter permease YP_001235037.1 2115109 D 349163 CDS YP_001235038.1 148260911 5160774 complement(2115979..2116455) 1 NC_009484.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2116455 5160774 Acry_1918 Acidiphilium cryptum JF-5 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001235038.1 2115979 R 349163 CDS YP_001235039.1 148260912 5160476 complement(2116452..2116850) 1 NC_009484.1 hypothetical protein 2116850 5160476 Acry_1919 Acidiphilium cryptum JF-5 hypothetical protein YP_001235039.1 2116452 R 349163 CDS YP_001235040.1 148260913 5160586 complement(2116922..2118586) 1 NC_009484.1 TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; M3 family oligoendopeptidase 2118586 5160586 Acry_1920 Acidiphilium cryptum JF-5 M3 family oligoendopeptidase YP_001235040.1 2116922 R 349163 CDS YP_001235041.1 148260914 5160587 complement(2118693..2119133) 1 NC_009484.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2119133 rplQ 5160587 rplQ Acidiphilium cryptum JF-5 50S ribosomal protein L17 YP_001235041.1 2118693 R 349163 CDS YP_001235042.1 148260915 5160731 complement(2119184..2120221) 1 NC_009484.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2120221 5160731 Acry_1922 Acidiphilium cryptum JF-5 DNA-directed RNA polymerase subunit alpha YP_001235042.1 2119184 R 349163 CDS YP_001235043.1 148260916 5160748 complement(2120338..2120730) 1 NC_009484.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2120730 5160748 Acry_1923 Acidiphilium cryptum JF-5 30S ribosomal protein S11 YP_001235043.1 2120338 R 349163 CDS YP_001235044.1 148260917 5160749 complement(2120809..2121186) 1 NC_009484.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2121186 rpsM 5160749 rpsM Acidiphilium cryptum JF-5 30S ribosomal protein S13 YP_001235044.1 2120809 R 349163 CDS YP_001235045.1 148260918 5160512 complement(2121387..2122061) 1 NC_009484.1 PFAM: adenylate kinase; adenylate kinase, lid domain protein; adenylate kinase 2122061 5160512 Acry_1925 Acidiphilium cryptum JF-5 adenylate kinase YP_001235045.1 2121387 R 349163 CDS YP_001235046.1 148260919 5160220 complement(2122058..2123407) 1 NC_009484.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; preprotein translocase subunit SecY 2123407 5160220 Acry_1926 Acidiphilium cryptum JF-5 preprotein translocase subunit SecY YP_001235046.1 2122058 R 349163 CDS YP_001235047.1 148260920 5160221 complement(2123545..2124030) 1 NC_009484.1 late assembly protein; 50S ribosomal protein L15 2124030 rplO 5160221 rplO Acidiphilium cryptum JF-5 50S ribosomal protein L15 YP_001235047.1 2123545 R 349163 CDS YP_001235048.1 148260921 5160802 complement(2124030..2124224) 1 NC_009484.1 PFAM: ribosomal protein L30; 50S ribosomal protein L30 2124224 5160802 Acry_1928 Acidiphilium cryptum JF-5 50S ribosomal protein L30 YP_001235048.1 2124030 R 349163 CDS YP_001235049.1 148260922 5160498 complement(2124217..2124786) 1 NC_009484.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2124786 rpsE 5160498 rpsE Acidiphilium cryptum JF-5 30S ribosomal protein S5 YP_001235049.1 2124217 R 349163 CDS YP_001235050.1 148260923 5160499 complement(2124797..2125159) 1 NC_009484.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 2125159 5160499 Acry_1930 Acidiphilium cryptum JF-5 50S ribosomal protein L18 YP_001235050.1 2124797 R 349163 CDS YP_001235051.1 148260924 5160412 complement(2125159..2125692) 1 NC_009484.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2125692 rplF 5160412 rplF Acidiphilium cryptum JF-5 50S ribosomal protein L6 YP_001235051.1 2125159 R 349163 CDS YP_001235052.1 148260925 5160871 complement(2125705..2126097) 1 NC_009484.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2126097 rpsH 5160871 rpsH Acidiphilium cryptum JF-5 30S ribosomal protein S8 YP_001235052.1 2125705 R 349163 CDS YP_001235053.1 148260926 5160872 complement(2126115..2126420) 1 NC_009484.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 2126420 rpsN 5160872 rpsN Acidiphilium cryptum JF-5 30S ribosomal protein S14 YP_001235053.1 2126115 R 349163 CDS YP_001235054.1 148260927 5160844 complement(2126498..2127055) 1 NC_009484.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2127055 rplE 5160844 rplE Acidiphilium cryptum JF-5 50S ribosomal protein L5 YP_001235054.1 2126498 R 349163 CDS YP_001235055.1 148260928 5160832 complement(2127066..2127386) 1 NC_009484.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2127386 rplX 5160832 rplX Acidiphilium cryptum JF-5 50S ribosomal protein L24 YP_001235055.1 2127066 R 349163 CDS YP_001235056.1 148260929 5160833 complement(2127388..2127756) 1 NC_009484.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2127756 rplN 5160833 rplN Acidiphilium cryptum JF-5 50S ribosomal protein L14 YP_001235056.1 2127388 R 349163 CDS YP_001235057.1 148260930 5160936 complement(2127758..2128030) 1 NC_009484.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2128030 rpsQ 5160936 rpsQ Acidiphilium cryptum JF-5 30S ribosomal protein S17 YP_001235057.1 2127758 R 349163 CDS YP_001235058.1 148260931 5160942 complement(2128044..2128250) 1 NC_009484.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2128250 5160942 Acry_1938 Acidiphilium cryptum JF-5 50S ribosomal protein L29 YP_001235058.1 2128044 R 349163 CDS YP_001235059.1 148260932 5160943 complement(2128252..2128668) 1 NC_009484.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2128668 rplP 5160943 rplP Acidiphilium cryptum JF-5 50S ribosomal protein L16 YP_001235059.1 2128252 R 349163 CDS YP_001235060.1 148260933 5160824 complement(2128684..2129361) 1 NC_009484.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2129361 rpsC 5160824 rpsC Acidiphilium cryptum JF-5 30S ribosomal protein S3 YP_001235060.1 2128684 R 349163 CDS YP_001235061.1 148260934 5160847 complement(2129361..2129822) 1 NC_009484.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2129822 rplV 5160847 rplV Acidiphilium cryptum JF-5 50S ribosomal protein L22 YP_001235061.1 2129361 R 349163 CDS YP_001235062.1 148260935 5160848 complement(2129824..2130102) 1 NC_009484.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2130102 rpsS 5160848 rpsS Acidiphilium cryptum JF-5 30S ribosomal protein S19 YP_001235062.1 2129824 R 349163 CDS YP_001235063.1 148260936 5160921 complement(2130108..2130941) 1 NC_009484.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2130941 rplB 5160921 rplB Acidiphilium cryptum JF-5 50S ribosomal protein L2 YP_001235063.1 2130108 R 349163 CDS YP_001235064.1 148260937 5160746 complement(2130956..2131297) 1 NC_009484.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2131297 rplW 5160746 rplW Acidiphilium cryptum JF-5 50S ribosomal protein L23 YP_001235064.1 2130956 R 349163 CDS YP_001235065.1 148260938 5160747 complement(2131294..2131944) 1 NC_009484.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2131944 rplD 5160747 rplD Acidiphilium cryptum JF-5 50S ribosomal protein L4 YP_001235065.1 2131294 R 349163 CDS YP_001235066.1 148260939 5160830 complement(2131955..2132638) 1 NC_009484.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2132638 rplC 5160830 rplC Acidiphilium cryptum JF-5 50S ribosomal protein L3 YP_001235066.1 2131955 R 349163 CDS YP_001235067.1 148260940 5160969 complement(2132645..2132953) 1 NC_009484.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2132953 rpsJ 5160969 rpsJ Acidiphilium cryptum JF-5 30S ribosomal protein S10 YP_001235067.1 2132645 R 349163 CDS YP_001235068.1 148260941 5160970 complement(2133085..2134272) 1 NC_009484.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2134272 5160970 Acry_1948 Acidiphilium cryptum JF-5 elongation factor Tu YP_001235068.1 2133085 R 349163 CDS YP_001235069.1 148260942 5160987 complement(2134339..2134815) 1 NC_009484.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2134815 5160987 Acry_1949 Acidiphilium cryptum JF-5 30S ribosomal protein S7 YP_001235069.1 2134339 R 349163 CDS YP_001235070.1 148260943 5160233 complement(2134827..2135198) 1 NC_009484.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2135198 rpsL 5160233 rpsL Acidiphilium cryptum JF-5 30S ribosomal protein S12 YP_001235070.1 2134827 R 349163 CDS YP_001235071.1 148260944 5160234 complement(2135587..2139753) 1 NC_009484.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2139753 5160234 Acry_1951 Acidiphilium cryptum JF-5 DNA-directed RNA polymerase subunit beta' YP_001235071.1 2135587 R 349163 CDS YP_001235072.1 148260945 5160885 complement(2139824..2144026) 1 NC_009484.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2144026 rpoB 5160885 rpoB Acidiphilium cryptum JF-5 DNA-directed RNA polymerase subunit beta YP_001235072.1 2139824 R 349163 CDS YP_001235073.1 148260946 5160925 complement(2144248..2144631) 1 NC_009484.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 2144631 rplL 5160925 rplL Acidiphilium cryptum JF-5 50S ribosomal protein L7/L12 YP_001235073.1 2144248 R 349163 CDS YP_001235074.1 148260947 5160926 complement(2144704..2145228) 1 NC_009484.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2145228 rplJ 5160926 rplJ Acidiphilium cryptum JF-5 50S ribosomal protein L10 YP_001235074.1 2144704 R 349163 CDS YP_001235075.1 148260948 5161033 complement(2145486..2146178) 1 NC_009484.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 2146178 rplA 5161033 rplA Acidiphilium cryptum JF-5 50S ribosomal protein L1 YP_001235075.1 2145486 R 349163 CDS YP_001235076.1 148260949 5160981 complement(2146181..2146615) 1 NC_009484.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2146615 rplK 5160981 rplK Acidiphilium cryptum JF-5 50S ribosomal protein L11 YP_001235076.1 2146181 R 349163 CDS YP_001235077.1 148260950 5160982 complement(2146825..2147490) 1 NC_009484.1 PFAM: OmpW family protein; OmpW family protein 2147490 5160982 Acry_1957 Acidiphilium cryptum JF-5 OmpW family protein YP_001235077.1 2146825 R 349163 CDS YP_001235078.1 148260951 5160888 2147673..2148653 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 2148653 5160888 Acry_1958 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001235078.1 2147673 D 349163 CDS YP_001235079.1 148260952 5160851 complement(2148736..2150136) 1 NC_009484.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2150136 gltX 5160851 gltX Acidiphilium cryptum JF-5 glutamyl-tRNA synthetase YP_001235079.1 2148736 R 349163 CDS YP_001235080.1 148260953 5160852 complement(2150176..2151018) 1 NC_009484.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2151018 5160852 Acry_1960 Acidiphilium cryptum JF-5 HAD family hydrolase YP_001235080.1 2150176 R 349163 CDS YP_001235081.1 148260954 5160818 complement(2151015..2152079) 1 NC_009484.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2152079 5160818 Acry_1961 Acidiphilium cryptum JF-5 dihydroorotate dehydrogenase 2 YP_001235081.1 2151015 R 349163 CDS YP_001235082.1 148260955 5160615 complement(2152079..2152522) 1 NC_009484.1 hypothetical protein 2152522 5160615 Acry_1962 Acidiphilium cryptum JF-5 hypothetical protein YP_001235082.1 2152079 R 349163 CDS YP_001235083.1 148260956 5160616 complement(2152691..2153536) 1 NC_009484.1 PFAM: fumarylacetoacetate (FAA) hydrolase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2153536 5160616 Acry_1963 Acidiphilium cryptum JF-5 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001235083.1 2152691 R 349163 CDS YP_001235084.1 148260957 5160522 2153732..2155057 1 NC_009484.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 2155057 5160522 Acry_1964 Acidiphilium cryptum JF-5 beta alanine--pyruvate transaminase YP_001235084.1 2153732 D 349163 CDS YP_001235085.1 148260958 5160977 2155095..2156525 1 NC_009484.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2156525 5160977 Acry_1965 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001235085.1 2155095 D 349163 CDS YP_001235086.1 148260959 5160978 complement(2156548..2157345) 1 NC_009484.1 PFAM: peptidase S49; peptidase S49 2157345 5160978 Acry_1966 Acidiphilium cryptum JF-5 peptidase S49 YP_001235086.1 2156548 R 349163 CDS YP_001235087.1 148260960 5161003 complement(2157342..2157767) 1 NC_009484.1 PFAM: uncharacterised conserved protein UCP032025; hypothetical protein 2157767 5161003 Acry_1967 Acidiphilium cryptum JF-5 hypothetical protein YP_001235087.1 2157342 R 349163 CDS YP_001235088.1 148260961 5161089 complement(2157764..2160076) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon-monoxide dehydrogenase 2160076 5161089 Acry_1968 Acidiphilium cryptum JF-5 carbon-monoxide dehydrogenase YP_001235088.1 2157764 R 349163 CDS YP_001235089.1 148260962 5161090 2160227..2160925 1 NC_009484.1 anti-ECFsigma factor ChrR 2160925 5161090 Acry_1969 Acidiphilium cryptum JF-5 anti-ECFsigma factor ChrR YP_001235089.1 2160227 D 349163 CDS YP_001235090.1 148260963 5160567 2160930..2162027 1 NC_009484.1 PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 2162027 5160567 Acry_1970 Acidiphilium cryptum JF-5 amine oxidase YP_001235090.1 2160930 D 349163 CDS YP_001235091.1 148260964 5161091 complement(2162024..2163232) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2163232 5161091 Acry_1971 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235091.1 2162024 R 349163 CDS YP_001235092.1 148260965 5161092 complement(2163229..2164038) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2164038 5161092 Acry_1972 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235092.1 2163229 R 349163 CDS YP_001235093.1 148260966 5161139 complement(2164103..2165212) 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase 2165212 5161139 Acry_1973 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235093.1 2164103 R 349163 CDS YP_001235094.1 148260967 5161123 complement(2165377..2165616) 1 NC_009484.1 hypothetical protein 2165616 5161123 Acry_1974 Acidiphilium cryptum JF-5 hypothetical protein YP_001235094.1 2165377 R 349163 CDS YP_001235095.1 148260968 5161124 complement(2165665..2167488) 1 NC_009484.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2167488 5161124 Acry_1975 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235095.1 2165665 R 349163 CDS YP_001235096.1 148260969 5161088 2167490..2168428 1 NC_009484.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2168428 5161088 Acry_1976 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001235096.1 2167490 D 349163 CDS YP_001235097.1 148260970 5160670 complement(2168450..2169118) 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2169118 5160670 Acry_1977 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001235097.1 2168450 R 349163 CDS YP_001235098.1 148260971 5160671 2169300..2170550 1 NC_009484.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding oxidoreductase 2170550 5160671 Acry_1978 Acidiphilium cryptum JF-5 molybdopterin binding oxidoreductase YP_001235098.1 2169300 D 349163 CDS YP_001235099.1 148260972 5161130 2170567..2170917 1 NC_009484.1 hypothetical protein 2170917 5161130 Acry_1979 Acidiphilium cryptum JF-5 hypothetical protein YP_001235099.1 2170567 D 349163 CDS YP_001235100.1 148260973 5161163 complement(2170924..2172735) 1 NC_009484.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; sodium/hydrogen exchanger 2172735 5161163 Acry_1980 Acidiphilium cryptum JF-5 sodium/hydrogen exchanger YP_001235100.1 2170924 R 349163 CDS YP_001235101.1 148260974 5161164 2172952..2174337 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 2174337 5161164 Acry_1981 Acidiphilium cryptum JF-5 pyridine nucleotide-disulfide oxidoreductase dimerisation region YP_001235101.1 2172952 D 349163 CDS YP_001235102.1 148260975 5161142 2174386..2175792 1 NC_009484.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2175792 5161142 Acry_1982 Acidiphilium cryptum JF-5 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001235102.1 2174386 D 349163 CDS YP_001235103.1 148260976 5161135 2175793..2176944 1 NC_009484.1 nicotinic acid phosphoribosyltransferase-like protein 2176944 5161135 Acry_1983 Acidiphilium cryptum JF-5 nicotinic acid phosphoribosyltransferase-like protein YP_001235103.1 2175793 D 349163 CDS YP_001235104.1 148260977 5161136 complement(2176966..2177313) 1 NC_009484.1 PFAM: protein of unknown function DUF937; hypothetical protein 2177313 5161136 Acry_1984 Acidiphilium cryptum JF-5 hypothetical protein YP_001235104.1 2176966 R 349163 CDS YP_001235105.1 148260978 5161217 complement(2177404..2177730) 1 NC_009484.1 hypothetical protein 2177730 5161217 Acry_1985 Acidiphilium cryptum JF-5 hypothetical protein YP_001235105.1 2177404 R 349163 CDS YP_001235106.1 148260979 5161231 2177815..2179566 1 NC_009484.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2179566 nadE 5161231 nadE Acidiphilium cryptum JF-5 NAD synthetase YP_001235106.1 2177815 D 349163 CDS YP_001235107.1 148260980 5161232 complement(2179567..2181066) 1 NC_009484.1 hypothetical protein 2181066 5161232 Acry_1987 Acidiphilium cryptum JF-5 hypothetical protein YP_001235107.1 2179567 R 349163 CDS YP_001235108.1 148260981 5159699 complement(2181393..2181662) 1 NC_009484.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 2181662 5159699 Acry_1988 Acidiphilium cryptum JF-5 histone family protein DNA-binding protein YP_001235108.1 2181393 R 349163 CDS YP_001235109.1 148260982 5162373 complement(2182106..2182717) 1 NC_009484.1 hypothetical protein 2182717 5162373 Acry_1989 Acidiphilium cryptum JF-5 hypothetical protein YP_001235109.1 2182106 R 349163 CDS YP_001235110.1 148260983 5162244 complement(2182912..2183175) 1 NC_009484.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE 2183175 5162244 Acry_1990 Acidiphilium cryptum JF-5 cell division topological specificity factor MinE YP_001235110.1 2182912 R 349163 CDS YP_001235111.1 148260984 5161129 complement(2183172..2183987) 1 NC_009484.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 2183987 5161129 Acry_1991 Acidiphilium cryptum JF-5 septum site-determining protein MinD YP_001235111.1 2183172 R 349163 CDS YP_001235112.1 148260985 5160593 complement(2183998..2184846) 1 NC_009484.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2184846 minC 5160593 minC Acidiphilium cryptum JF-5 septum formation inhibitor YP_001235112.1 2183998 R 349163 CDS YP_001235113.1 148260986 5160594 complement(2184901..2185881) 1 NC_009484.1 PFAM: oxidoreductase domain protein; oxidoreductase domain-containing protein 2185881 5160594 Acry_1993 Acidiphilium cryptum JF-5 oxidoreductase domain-containing protein YP_001235113.1 2184901 R 349163 CDS YP_001235114.1 148260987 5162200 2188624..2189094 1 NC_009484.1 hypothetical protein 2189094 5162200 Acry_1995 Acidiphilium cryptum JF-5 hypothetical protein YP_001235114.1 2188624 D 349163 CDS YP_001235115.1 148260988 5160381 complement(2189098..2189814) 1 NC_009484.1 PFAM: lipolytic enzyme, G-D-S-L family; GDSL family lipase 2189814 5160381 Acry_1996 Acidiphilium cryptum JF-5 GDSL family lipase YP_001235115.1 2189098 R 349163 CDS YP_001235116.1 148260989 5160382 complement(2189792..2190898) 1 NC_009484.1 hypothetical protein 2190898 5160382 Acry_1997 Acidiphilium cryptum JF-5 hypothetical protein YP_001235116.1 2189792 R 349163 CDS YP_001235117.1 148260990 5160187 complement(2190895..2191485) 1 NC_009484.1 TIGRFAM: recombination protein RecR; PFAM: RecR protein; recombination protein RecR 2191485 5160187 Acry_1998 Acidiphilium cryptum JF-5 recombination protein RecR YP_001235117.1 2190895 R 349163 CDS YP_001235118.1 148260991 5161249 complement(2191511..2191834) 1 NC_009484.1 PFAM: conserved hypothetical protein 103; hypothetical protein 2191834 5161249 Acry_1999 Acidiphilium cryptum JF-5 hypothetical protein YP_001235118.1 2191511 R 349163 CDS YP_001235119.1 148260992 5161250 complement(2191834..2193678) 1 NC_009484.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 2193678 5161250 Acry_2000 Acidiphilium cryptum JF-5 DNA polymerase III subunits gamma and tau YP_001235119.1 2191834 R 349163 CDS YP_001235120.1 148260993 5162201 2193886..2194797 1 NC_009484.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2194797 5162201 Acry_2001 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001235120.1 2193886 D 349163 CDS YP_001235121.1 148260994 5161212 2194887..2195486 1 NC_009484.1 stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 2195486 5161212 Acry_2002 Acidiphilium cryptum JF-5 TrpR binding protein WrbA YP_001235121.1 2194887 D 349163 CDS YP_001235122.1 148260995 5161213 2195597..2196526 1 NC_009484.1 PFAM: metallophosphoesterase; acid phosphatase 2196526 5161213 Acry_2003 Acidiphilium cryptum JF-5 acid phosphatase YP_001235122.1 2195597 D 349163 CDS YP_001235123.1 148260996 5161308 complement(2196545..2198557) 1 NC_009484.1 hypothetical protein 2198557 5161308 Acry_2004 Acidiphilium cryptum JF-5 hypothetical protein YP_001235123.1 2196545 R 349163 CDS YP_001235124.1 148260997 5161267 complement(2198554..2201232) 1 NC_009484.1 TIGRFAM: conserved hypothetical membrane protein; hypothetical protein 2201232 5161267 Acry_2005 Acidiphilium cryptum JF-5 hypothetical protein YP_001235124.1 2198554 R 349163 CDS YP_001235125.1 148260998 5161268 complement(2201229..2202092) 1 NC_009484.1 hypothetical protein 2202092 5161268 Acry_2006 Acidiphilium cryptum JF-5 hypothetical protein YP_001235125.1 2201229 R 349163 CDS YP_001235126.1 148260999 5161324 complement(2202073..2203161) 1 NC_009484.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 2203161 5161324 Acry_2007 Acidiphilium cryptum JF-5 ATPase YP_001235126.1 2202073 R 349163 CDS YP_001235127.1 148261000 5161320 2203188..2203856 1 NC_009484.1 PFAM: protein of unknown function DUF1285; hypothetical protein 2203856 5161320 Acry_2008 Acidiphilium cryptum JF-5 hypothetical protein YP_001235127.1 2203188 D 349163 CDS YP_001235128.1 148261001 5161321 2203861..2204454 1 NC_009484.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2204454 5161321 Acry_2009 Acidiphilium cryptum JF-5 NUDIX hydrolase YP_001235128.1 2203861 D 349163 CDS YP_001235129.1 148261002 5161253 2204548..2205717 1 NC_009484.1 PFAM: Polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 2205717 5161253 Acry_2010 Acidiphilium cryptum JF-5 polynucleotide adenylyltransferase YP_001235129.1 2204548 D 349163 CDS YP_001235130.1 148261003 5161183 complement(2205696..2206373) 1 NC_009484.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2206373 5161183 Acry_2011 Acidiphilium cryptum JF-5 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001235130.1 2205696 R 349163 CDS YP_001235131.1 148261004 5161184 complement(2206370..2207464) 1 NC_009484.1 PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 2207464 5161184 Acry_2012 Acidiphilium cryptum JF-5 Ppx/GppA phosphatase YP_001235131.1 2206370 R 349163 CDS YP_001235132.1 148261005 5162482 2208055..2210439 1 NC_009484.1 PFAM: Transketolase, central region; pyruvate dehydrogenase 2210439 5162482 Acry_2013 Acidiphilium cryptum JF-5 pyruvate dehydrogenase YP_001235132.1 2208055 D 349163 CDS YP_001235133.1 148261006 5161314 complement(2210464..2211063) 1 NC_009484.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA 2211063 5161314 Acry_2014 Acidiphilium cryptum JF-5 sigma 54 modulation protein/ribosomal protein S30EA YP_001235133.1 2210464 R 349163 CDS YP_001235134.1 148261007 5161315 complement(2211195..2212667) 1 NC_009484.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 2212667 5161315 Acry_2015 Acidiphilium cryptum JF-5 RNA polymerase factor sigma-54 YP_001235134.1 2211195 R 349163 CDS YP_001235135.1 148261008 5161311 complement(2212790..2213713) 1 NC_009484.1 PFAM: type II secretion system protein; type II secretion system protein 2213713 5161311 Acry_2016 Acidiphilium cryptum JF-5 type II secretion system protein YP_001235135.1 2212790 R 349163 CDS YP_001235136.1 148261009 5161287 complement(2213715..2214674) 1 NC_009484.1 PFAM: type II secretion system protein; type II secretion system protein 2214674 5161287 Acry_2017 Acidiphilium cryptum JF-5 type II secretion system protein YP_001235136.1 2213715 R 349163 CDS YP_001235137.1 148261010 5161288 complement(2214671..2216008) 1 NC_009484.1 PFAM: type II secretion system protein E; type II secretion system protein E 2216008 5161288 Acry_2018 Acidiphilium cryptum JF-5 type II secretion system protein E YP_001235137.1 2214671 R 349163 CDS YP_001235138.1 148261011 5161271 complement(2216005..2217207) 1 NC_009484.1 Flp pilus assembly protein ATPase CpaE-like protein 2217207 5161271 Acry_2019 Acidiphilium cryptum JF-5 Flp pilus assembly protein ATPase CpaE-like protein YP_001235138.1 2216005 R 349163 CDS YP_001235139.1 148261012 5161397 complement(2217204..2218031) 1 NC_009484.1 PFAM: SAF domain; SAF domain-containing protein 2218031 5161397 Acry_2020 Acidiphilium cryptum JF-5 SAF domain-containing protein YP_001235139.1 2217204 R 349163 CDS YP_001235140.1 148261013 5161398 complement(2218196..2218399) 1 NC_009484.1 PFAM: Flp/Fap pilin component; Flp/Fap pilin component 2218399 5161398 Acry_2021 Acidiphilium cryptum JF-5 Flp/Fap pilin component YP_001235140.1 2218196 R 349163 CDS YP_001235141.1 148261014 5161138 complement(2218585..2219577) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 2219577 5161138 Acry_2022 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001235141.1 2218585 R 349163 CDS YP_001235142.1 148261015 5161345 2219982..2220452 1 NC_009484.1 PFAM: protein of unknown function DUF583; hypothetical protein 2220452 5161345 Acry_2023 Acidiphilium cryptum JF-5 hypothetical protein YP_001235142.1 2219982 D 349163 CDS YP_001235143.1 148261016 5161346 2220491..2220838 1 NC_009484.1 hypothetical protein 2220838 5161346 Acry_2024 Acidiphilium cryptum JF-5 hypothetical protein YP_001235143.1 2220491 D 349163 CDS YP_001235144.1 148261017 5160369 2220910..2221863 1 NC_009484.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2221863 5160369 Acry_2025 Acidiphilium cryptum JF-5 glutathione synthetase YP_001235144.1 2220910 D 349163 CDS YP_001235145.1 148261018 5162398 2221867..2222445 1 NC_009484.1 hypothetical protein 2222445 5162398 Acry_2026 Acidiphilium cryptum JF-5 hypothetical protein YP_001235145.1 2221867 D 349163 CDS YP_001235146.1 148261019 5162399 complement(2222456..2223295) 1 NC_009484.1 PFAM: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 2223295 5162399 Acry_2027 Acidiphilium cryptum JF-5 N-acetylmuramoyl-L-alanine amidase YP_001235146.1 2222456 R 349163 CDS YP_001235147.1 148261020 5161304 2223486..2223902 1 NC_009484.1 hypothetical protein 2223902 5161304 Acry_2028 Acidiphilium cryptum JF-5 hypothetical protein YP_001235147.1 2223486 D 349163 CDS YP_001235148.1 148261021 5161285 complement(2223909..2225372) 1 NC_009484.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 2225372 5161285 Acry_2029 Acidiphilium cryptum JF-5 isocitrate dehydrogenase YP_001235148.1 2223909 R 349163 CDS YP_001235149.1 148261022 5161286 2225593..2227140 1 NC_009484.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2227140 5161286 Acry_2030 Acidiphilium cryptum JF-5 EmrB/QacA family drug resistance transporter YP_001235149.1 2225593 D 349163 CDS YP_001235150.1 148261023 5159991 complement(2227160..2227678) 1 NC_009484.1 TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2227678 5159991 Acry_2031 Acidiphilium cryptum JF-5 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001235150.1 2227160 R 349163 CDS YP_001235151.1 148261024 5161414 2227785..2228846 1 NC_009484.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; nifR3 family TIM-barrel protein 2228846 5161414 Acry_2032 Acidiphilium cryptum JF-5 nifR3 family TIM-barrel protein YP_001235151.1 2227785 D 349163 CDS YP_001235152.1 148261025 5161415 2228843..2229988 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 2229988 5161415 Acry_2033 Acidiphilium cryptum JF-5 signal transduction histidine kinase, nitrogen specific, NtrB YP_001235152.1 2228843 D 349163 CDS YP_001235153.1 148261026 5161342 2229985..2231448 1 NC_009484.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 2231448 5161342 Acry_2034 Acidiphilium cryptum JF-5 nitrogen metabolism transcriptional regulator NtrC YP_001235153.1 2229985 D 349163 CDS YP_001235154.1 148261027 5161374 2231456..2233678 1 NC_009484.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 2233678 5161374 Acry_2035 Acidiphilium cryptum JF-5 multi-sensor signal transduction histidine kinase YP_001235154.1 2231456 D 349163 CDS YP_001235155.1 148261028 5161375 2233686..2235083 1 NC_009484.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator 2235083 5161375 Acry_2036 Acidiphilium cryptum JF-5 two component sigma54 specific Fis family transcriptional regulator YP_001235155.1 2233686 D 349163 CDS YP_001235156.1 148261029 5161400 2235221..2237686 1 NC_009484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor 2237686 5161400 Acry_2037 Acidiphilium cryptum JF-5 TonB-dependent receptor YP_001235156.1 2235221 D 349163 CDS YP_001235157.1 148261030 5161534 complement(2238107..2238592) 1 NC_009484.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 2238592 5161534 Acry_2038 Acidiphilium cryptum JF-5 single-strand binding protein YP_001235157.1 2238107 R 349163 CDS YP_001235158.1 148261031 5161535 complement(2238718..2239743) 1 NC_009484.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 2239743 5161535 Acry_2039 Acidiphilium cryptum JF-5 cytochrome d ubiquinol oxidase subunit II YP_001235158.1 2238718 R 349163 CDS YP_001235159.1 148261032 5160231 complement(2239749..2241167) 1 NC_009484.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 2241167 5160231 Acry_2040 Acidiphilium cryptum JF-5 cytochrome bd ubiquinol oxidase subunit I YP_001235159.1 2239749 R 349163 CDS YP_001235160.1 148261033 5161464 complement(2241164..2241805) 1 NC_009484.1 transcriptional regulator-like protein 2241805 5161464 Acry_2041 Acidiphilium cryptum JF-5 transcriptional regulator-like protein YP_001235160.1 2241164 R 349163 CDS YP_001235161.1 148261034 5161465 complement(2241872..2242783) 1 NC_009484.1 PFAM: protein of unknown function UPF0187; hypothetical protein 2242783 5161465 Acry_2042 Acidiphilium cryptum JF-5 hypothetical protein YP_001235161.1 2241872 R 349163 CDS YP_001235162.1 148261035 5161347 complement(2242823..2243755) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2243755 5161347 Acry_2043 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235162.1 2242823 R 349163 CDS YP_001235163.1 148261036 5161358 2244079..2246367 1 NC_009484.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2246367 5161358 Acry_2044 Acidiphilium cryptum JF-5 oxidoreductase alpha (molybdopterin) subunit YP_001235163.1 2244079 D 349163 CDS YP_001235164.1 148261037 5161359 complement(2246422..2247498) 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2247498 5161359 Acry_2045 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001235164.1 2246422 R 349163 CDS YP_001235165.1 148261038 5161170 complement(2247498..2250377) 1 NC_009484.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 2250377 uvrA 5161170 uvrA Acidiphilium cryptum JF-5 excinuclease ABC subunit A YP_001235165.1 2247498 R 349163 CDS YP_001235166.1 148261039 5162410 2250443..2250733 1 NC_009484.1 hypothetical protein 2250733 5162410 Acry_2047 Acidiphilium cryptum JF-5 hypothetical protein YP_001235166.1 2250443 D 349163 CDS YP_001235167.1 148261040 5162411 complement(2250737..2251741) 1 NC_009484.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2251741 holA 5162411 holA Acidiphilium cryptum JF-5 DNA polymerase III subunit delta YP_001235167.1 2250737 R 349163 CDS YP_001235168.1 148261041 5161392 complement(2251746..2252264) 1 NC_009484.1 secreted (periplasmic) protein-like protein 2252264 5161392 Acry_2049 Acidiphilium cryptum JF-5 secreted (periplasmic) protein-like protein YP_001235168.1 2251746 R 349163 CDS YP_001235169.1 148261042 5161511 complement(2252248..2254842) 1 NC_009484.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2254842 leuS 5161511 leuS Acidiphilium cryptum JF-5 leucyl-tRNA synthetase YP_001235169.1 2252248 R 349163 CDS YP_001235170.1 148261043 5161512 complement(2254847..2255395) 1 NC_009484.1 hypothetical protein 2255395 5161512 Acry_2051 Acidiphilium cryptum JF-5 hypothetical protein YP_001235170.1 2254847 R 349163 CDS YP_001235171.1 148261044 5161506 complement(2255627..2256931) 1 NC_009484.1 hypothetical protein 2256931 5161506 Acry_2052 Acidiphilium cryptum JF-5 hypothetical protein YP_001235171.1 2255627 R 349163 CDS YP_001235172.1 148261045 5161449 complement(2257102..2257611) 1 NC_009484.1 PFAM: thiamine monophosphate synthase; thiamine monophosphate synthase 2257611 5161449 Acry_2053 Acidiphilium cryptum JF-5 thiamine monophosphate synthase YP_001235172.1 2257102 R 349163 CDS YP_001235173.1 148261046 5161450 2257703..2258392 1 NC_009484.1 PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 2258392 5161450 Acry_2054 Acidiphilium cryptum JF-5 alanine racemase domain-containing protein YP_001235173.1 2257703 D 349163 CDS YP_001235174.1 148261047 5161494 complement(2258386..2259366) 1 NC_009484.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2259366 5161494 Acry_2055 Acidiphilium cryptum JF-5 D-isomer specific 2-hydroxyacid dehydrogenase YP_001235174.1 2258386 R 349163 CDS YP_001235175.1 148261048 5161517 complement(2259369..2260646) 1 NC_009484.1 PFAM: protein of unknown function DUF445; hypothetical protein 2260646 5161517 Acry_2056 Acidiphilium cryptum JF-5 hypothetical protein YP_001235175.1 2259369 R 349163 CDS YP_001235176.1 148261049 5161518 2260735..2262072 1 NC_009484.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2262072 5161518 Acry_2057 Acidiphilium cryptum JF-5 nicotinate phosphoribosyltransferase YP_001235176.1 2260735 D 349163 CDS YP_001235177.1 148261050 5161240 2262075..2263418 1 NC_009484.1 hypothetical protein 2263418 5161240 Acry_2058 Acidiphilium cryptum JF-5 hypothetical protein YP_001235177.1 2262075 D 349163 CDS YP_001235178.1 148261051 5161592 2263415..2264374 1 NC_009484.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2264374 5161592 Acry_2059 Acidiphilium cryptum JF-5 ribose-phosphate pyrophosphokinase YP_001235178.1 2263415 D 349163 CDS YP_001235179.1 148261052 5161593 2264364..2265200 1 NC_009484.1 hypothetical protein 2265200 5161593 Acry_2060 Acidiphilium cryptum JF-5 hypothetical protein YP_001235179.1 2264364 D 349163 CDS YP_001235180.1 148261053 5161649 complement(2265176..2265841) 1 NC_009484.1 PFAM: phosphoribosyltransferase; phosphoribosyltransferase 2265841 5161649 Acry_2061 Acidiphilium cryptum JF-5 phosphoribosyltransferase YP_001235180.1 2265176 R 349163 CDS YP_001235181.1 148261054 5161608 complement(2265852..2266292) 1 NC_009484.1 hypothetical protein 2266292 5161608 Acry_2062 Acidiphilium cryptum JF-5 hypothetical protein YP_001235181.1 2265852 R 349163 CDS YP_001235182.1 148261055 5161609 2266474..2268264 1 NC_009484.1 PFAM: Patatin; patatin 2268264 5161609 Acry_2063 Acidiphilium cryptum JF-5 patatin YP_001235182.1 2266474 D 349163 CDS YP_001235183.1 148261056 5161539 complement(2268273..2269484) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2269484 5161539 Acry_2064 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235183.1 2268273 R 349163 CDS YP_001235184.1 148261057 5162308 complement(2269610..2272015) 1 NC_009484.1 PFAM: Transketolase, central region; transketolase, central region 2272015 5162308 Acry_2065 Acidiphilium cryptum JF-5 transketolase, central region YP_001235184.1 2269610 R 349163 CDS YP_001235185.1 148261058 5162309 2272136..2272606 1 NC_009484.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2272606 5162309 Acry_2066 Acidiphilium cryptum JF-5 AsnC family transcriptional regulator YP_001235185.1 2272136 D 349163 CDS YP_001235186.1 148261059 5162378 complement(2272622..2274739) 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2274739 5162378 Acry_2067 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001235186.1 2272622 R 349163 CDS YP_001235187.1 148261060 5161527 2275106..2276404 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2276404 5161527 Acry_2068 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235187.1 2275106 D 349163 CDS YP_001235188.1 148261061 5161528 2276707..2277948 1 NC_009484.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 2277948 5161528 Acry_2069 Acidiphilium cryptum JF-5 Rieske (2Fe-2S) domain-containing protein YP_001235188.1 2276707 D 349163 CDS YP_001235189.1 148261062 5161279 2277950..2279200 1 NC_009484.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; cystathionine gamma-synthase 2279200 5161279 Acry_2070 Acidiphilium cryptum JF-5 cystathionine gamma-synthase YP_001235189.1 2277950 D 349163 CDS YP_001235190.1 148261063 5161590 2279197..2280690 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2280690 5161590 Acry_2071 Acidiphilium cryptum JF-5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001235190.1 2279197 D 349163 CDS YP_001235191.1 148261064 5161591 2280687..2281865 1 NC_009484.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2281865 5161591 Acry_2072 Acidiphilium cryptum JF-5 FAD dependent oxidoreductase YP_001235191.1 2280687 D 349163 CDS YP_001235192.1 148261065 5161617 2281862..2282980 1 NC_009484.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase 2282980 5161617 Acry_2073 Acidiphilium cryptum JF-5 FAD dependent oxidoreductase YP_001235192.1 2281862 D 349163 CDS YP_001235193.1 148261066 5161406 complement(2282987..2283949) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2283949 5161406 Acry_2074 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235193.1 2282987 R 349163 CDS YP_001235194.1 148261067 5161407 complement(2284023..2286053) 1 NC_009484.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2286053 5161407 Acry_2075 Acidiphilium cryptum JF-5 oligopeptide/dipeptide ABC transporter ATPase YP_001235194.1 2284023 R 349163 CDS YP_001235195.1 148261068 5160254 complement(2286050..2286901) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2286901 5160254 Acry_2076 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001235195.1 2286050 R 349163 CDS YP_001235196.1 148261069 5161672 complement(2286898..2287863) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2287863 5161672 Acry_2077 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001235196.1 2286898 R 349163 CDS YP_001235197.1 148261070 5161673 complement(2287867..2289519) 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2289519 5161673 Acry_2078 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001235197.1 2287867 R 349163 CDS YP_001235198.1 148261071 5161686 2289879..2290898 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2290898 5161686 Acry_2079 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001235198.1 2289879 D 349163 CDS YP_001235199.1 148261072 5161757 2291045..2291896 1 NC_009484.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2291896 5161757 Acry_2080 Acidiphilium cryptum JF-5 phospholipid/glycerol acyltransferase YP_001235199.1 2291045 D 349163 CDS YP_001235200.1 148261073 5162183 2292679..2293296 1 NC_009484.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2293296 5162183 Acry_2082 Acidiphilium cryptum JF-5 lysine exporter protein LysE/YggA YP_001235200.1 2292679 D 349163 CDS YP_001235201.1 148261074 5162429 2293417..2294679 1 NC_009484.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 2294679 5162429 Acry_2083 Acidiphilium cryptum JF-5 paraquat-inducible protein A YP_001235201.1 2293417 D 349163 CDS YP_001235202.1 148261075 5162379 2294672..2296297 1 NC_009484.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 2296297 5162379 Acry_2084 Acidiphilium cryptum JF-5 hypothetical protein YP_001235202.1 2294672 D 349163 CDS YP_001235203.1 148261076 5162380 2296297..2296851 1 NC_009484.1 PFAM: protein of unknown function DUF330; hypothetical protein 2296851 5162380 Acry_2085 Acidiphilium cryptum JF-5 hypothetical protein YP_001235203.1 2296297 D 349163 CDS YP_001235204.1 148261077 5161564 complement(2296859..2297578) 1 NC_009484.1 PFAM: protein phosphatase 2C domain protein; protein phosphatase 2C domain-containing protein 2297578 5161564 Acry_2086 Acidiphilium cryptum JF-5 protein phosphatase 2C domain-containing protein YP_001235204.1 2296859 R 349163 CDS YP_001235205.1 148261078 5160428 complement(2297575..2298105) 1 NC_009484.1 hypothetical protein 2298105 5160428 Acry_2087 Acidiphilium cryptum JF-5 hypothetical protein YP_001235205.1 2297575 R 349163 CDS YP_001235206.1 148261079 5160429 complement(2298110..2301637) 1 NC_009484.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 2301637 5160429 Acry_2088 Acidiphilium cryptum JF-5 ImcF domain-containing protein YP_001235206.1 2298110 R 349163 CDS YP_001235207.1 148261080 5161688 complement(2301634..2303004) 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2303004 5161688 Acry_2089 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001235207.1 2301634 R 349163 CDS YP_001235208.1 148261081 5161764 complement(2303015..2304346) 1 NC_009484.1 PFAM: protein of unknown function DUF876; hypothetical protein 2304346 5161764 Acry_2090 Acidiphilium cryptum JF-5 hypothetical protein YP_001235208.1 2303015 R 349163 CDS YP_001235209.1 148261082 5161765 complement(2304353..2304823) 1 NC_009484.1 hypothetical protein 2304823 5161765 Acry_2091 Acidiphilium cryptum JF-5 hypothetical protein YP_001235209.1 2304353 R 349163 CDS YP_001235210.1 148261083 5161841 complement(2304820..2306211) 1 NC_009484.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 2306211 5161841 Acry_2092 Acidiphilium cryptum JF-5 FHA domain-containing protein YP_001235210.1 2304820 R 349163 CDS YP_001235211.1 148261084 5161863 complement(2306208..2306789) 1 NC_009484.1 hypothetical protein 2306789 5161863 Acry_2093 Acidiphilium cryptum JF-5 hypothetical protein YP_001235211.1 2306208 R 349163 CDS YP_001235212.1 148261085 5161864 complement(2306806..2308746) 1 NC_009484.1 PFAM: Rhs element Vgr protein; Gp5 domain protein; Rhs element Vgr protein 2308746 5161864 Acry_2094 Acidiphilium cryptum JF-5 Rhs element Vgr protein YP_001235212.1 2306806 R 349163 CDS YP_001235213.1 148261086 5161855 2309099..2310877 1 NC_009484.1 PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 2310877 5161855 Acry_2095 Acidiphilium cryptum JF-5 polypeptide-transport-associated domain-containing protein YP_001235213.1 2309099 D 349163 CDS YP_001235214.1 148261087 5161880 2311036..2319699 1 NC_009484.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; filamentous hemagglutinin outer membrane protein 2319699 5161880 Acry_2096 Acidiphilium cryptum JF-5 filamentous hemagglutinin outer membrane protein YP_001235214.1 2311036 D 349163 CDS YP_001235215.1 148261088 5161881 2319702..2322776 1 NC_009484.1 hypothetical protein 2322776 5161881 Acry_2097 Acidiphilium cryptum JF-5 hypothetical protein YP_001235215.1 2319702 D 349163 CDS YP_001235216.1 148261089 5161866 2322812..2324674 1 NC_009484.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; protein kinase 2324674 5161866 Acry_2098 Acidiphilium cryptum JF-5 protein kinase YP_001235216.1 2322812 D 349163 CDS YP_001235217.1 148261090 5161913 complement(2324679..2325050) 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 2325050 5161913 Acry_2099 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001235217.1 2324679 R 349163 CDS YP_001235218.1 148261091 5161914 complement(2325102..2326451) 1 NC_009484.1 hypothetical protein 2326451 5161914 Acry_2100 Acidiphilium cryptum JF-5 hypothetical protein YP_001235218.1 2325102 R 349163 CDS YP_001235219.1 148261092 5161766 2326565..2328442 1 NC_009484.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 2328442 5161766 Acry_2101 Acidiphilium cryptum JF-5 ATP-dependent DNA helicase RecQ YP_001235219.1 2326565 D 349163 CDS YP_001235220.1 148261093 5161806 2328439..2329122 1 NC_009484.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2329122 5161806 Acry_2102 Acidiphilium cryptum JF-5 CRP/FNR family transcriptional regulator YP_001235220.1 2328439 D 349163 CDS YP_001235221.1 148261094 5161807 2329204..2330499 1 NC_009484.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 2330499 5161807 Acry_2103 Acidiphilium cryptum JF-5 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001235221.1 2329204 D 349163 CDS YP_001235222.1 148261095 5161715 complement(2330552..2333215) 1 NC_009484.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; peptidase M61 domain protein; aminopeptidase N 2333215 pepN 5161715 pepN Acidiphilium cryptum JF-5 aminopeptidase N YP_001235222.1 2330552 R 349163 CDS YP_001235223.1 148261096 5161189 2333241..2334557 1 NC_009484.1 PFAM: protein of unknown function DUF482; hypothetical protein 2334557 5161189 Acry_2105 Acidiphilium cryptum JF-5 hypothetical protein YP_001235223.1 2333241 D 349163 CDS YP_001235224.1 148261097 5161190 2334554..2335420 1 NC_009484.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2335420 5161190 Acry_2106 Acidiphilium cryptum JF-5 hypothetical protein YP_001235224.1 2334554 D 349163 CDS YP_001235225.1 148261098 5161938 complement(2335381..2335761) 1 NC_009484.1 PFAM: CsbD family protein; CsbD family protein 2335761 5161938 Acry_2107 Acidiphilium cryptum JF-5 CsbD family protein YP_001235225.1 2335381 R 349163 CDS YP_001235226.1 148261099 5161823 complement(2335973..2337181) 1 NC_009484.1 PFAM: transposase, mutator type; transposase, mutator type 2337181 5161823 Acry_2108 Acidiphilium cryptum JF-5 transposase, mutator type YP_001235226.1 2335973 R 349163 CDS YP_001235227.1 148261100 5161824 2337408..2339021 1 NC_009484.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 2339021 5161824 Acry_2109 Acidiphilium cryptum JF-5 amino acid permease-associated protein YP_001235227.1 2337408 D 349163 CDS YP_001235228.1 148261101 5162457 2339112..2339729 1 NC_009484.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2339729 5162457 Acry_2110 Acidiphilium cryptum JF-5 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001235228.1 2339112 D 349163 CDS YP_001235229.1 148261102 5162251 complement(2339739..2340338) 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2340338 5162251 Acry_2111 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001235229.1 2339739 R 349163 CDS YP_001235230.1 148261103 5162252 complement(2340459..2341520) 1 NC_009484.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2341520 5162252 Acry_2112 Acidiphilium cryptum JF-5 aminoglycoside phosphotransferase YP_001235230.1 2340459 R 349163 CDS YP_001235231.1 148261104 5162445 2341699..2342979 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2342979 5162445 Acry_2113 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001235231.1 2341699 D 349163 CDS YP_001235232.1 148261105 5161700 2342979..2343953 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2343953 5161700 Acry_2114 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235232.1 2342979 D 349163 CDS YP_001235233.1 148261106 5161701 2343950..2344828 1 NC_009484.1 probable dehydrogenase; hypothetical protein 2344828 5161701 Acry_2115 Acidiphilium cryptum JF-5 hypothetical protein YP_001235233.1 2343950 D 349163 CDS YP_001235234.1 148261107 5162240 complement(2344836..2345774) 1 NC_009484.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 2345774 5162240 Acry_2116 Acidiphilium cryptum JF-5 thiamine-monophosphate kinase YP_001235234.1 2344836 R 349163 CDS YP_001235235.1 148261108 5159867 complement(2345776..2346273) 1 NC_009484.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 2346273 5159867 Acry_2117 Acidiphilium cryptum JF-5 NusB antitermination factor YP_001235235.1 2345776 R 349163 CDS YP_001235236.1 148261109 5159868 complement(2346270..2346752) 1 NC_009484.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2346752 5159868 Acry_2118 Acidiphilium cryptum JF-5 6,7-dimethyl-8-ribityllumazine synthase YP_001235236.1 2346270 R 349163 CDS YP_001235237.1 148261110 5159946 complement(2346749..2347876) 1 NC_009484.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2347876 5159946 Acry_2119 Acidiphilium cryptum JF-5 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001235237.1 2346749 R 349163 CDS YP_001235238.1 148261111 5161409 complement(2347876..2348490) 1 NC_009484.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2348490 5161409 Acry_2120 Acidiphilium cryptum JF-5 riboflavin synthase subunit alpha YP_001235238.1 2347876 R 349163 CDS YP_001235239.1 148261112 5161410 complement(2348494..2349585) 1 NC_009484.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 2349585 5161410 Acry_2121 Acidiphilium cryptum JF-5 riboflavin biosynthesis protein RibD YP_001235239.1 2348494 R 349163 CDS YP_001235240.1 148261113 5159624 complement(2349588..2350043) 1 NC_009484.1 PFAM: ATP-cone domain protein; transcriptional regulator NrdR 2350043 nrdR 5159624 nrdR Acidiphilium cryptum JF-5 transcriptional regulator NrdR YP_001235240.1 2349588 R 349163 CDS YP_001235241.1 148261114 5162416 complement(2350050..2351348) 1 NC_009484.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2351348 glyA 5162416 glyA Acidiphilium cryptum JF-5 serine hydroxymethyltransferase YP_001235241.1 2350050 R 349163 CDS YP_001235242.1 148261115 5162417 complement(2351345..2351797) 1 NC_009484.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 2351797 5162417 Acry_2124 Acidiphilium cryptum JF-5 RpiB/LacA/LacB family sugar-phosphate isomerase YP_001235242.1 2351345 R 349163 CDS YP_001235243.1 148261116 5162102 2352050..2352235 1 NC_009484.1 PFAM: protein of unknown function DUF343; hypothetical protein 2352235 5162102 Acry_2125 Acidiphilium cryptum JF-5 hypothetical protein YP_001235243.1 2352050 D 349163 CDS YP_001235244.1 148261117 5161996 2352232..2352594 1 NC_009484.1 PFAM: protein of unknown function DUF971; hypothetical protein 2352594 5161996 Acry_2126 Acidiphilium cryptum JF-5 hypothetical protein YP_001235244.1 2352232 D 349163 CDS YP_001235245.1 148261118 5161997 2352742..2353677 1 NC_009484.1 PFAM: Thioredoxin domain; thioredoxin domain-containing protein 2353677 5161997 Acry_2127 Acidiphilium cryptum JF-5 thioredoxin domain-containing protein YP_001235245.1 2352742 D 349163 CDS YP_001235246.1 148261119 5162120 2353692..2354345 1 NC_009484.1 PFAM: peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 2354345 5162120 Acry_2128 Acidiphilium cryptum JF-5 peptidase S16, lon domain-containing protein YP_001235246.1 2353692 D 349163 CDS YP_001235247.1 148261120 5162153 complement(2354353..2355360) 1 NC_009484.1 PFAM: type III secretion exporter; type III secretion exporter 2355360 5162153 Acry_2129 Acidiphilium cryptum JF-5 type III secretion exporter YP_001235247.1 2354353 R 349163 CDS YP_001235248.1 148261121 5162154 complement(2355464..2356243) 1 NC_009484.1 PFAM: type III secretion system inner membrane R protein; type III secretion system inner membrane R protein 2356243 5162154 Acry_2130 Acidiphilium cryptum JF-5 type III secretion system inner membrane R protein YP_001235248.1 2355464 R 349163 CDS YP_001235249.1 148261122 5162128 complement(2356246..2356512) 1 NC_009484.1 PFAM: export protein FliQ, family 3; export protein FliQ 2356512 5162128 Acry_2131 Acidiphilium cryptum JF-5 export protein FliQ YP_001235249.1 2356246 R 349163 CDS YP_001235250.1 148261123 5162112 complement(2356588..2356890) 1 NC_009484.1 PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein FliE 2356890 5162112 Acry_2132 Acidiphilium cryptum JF-5 flagellar hook-basal body complex protein FliE YP_001235250.1 2356588 R 349163 CDS YP_001235251.1 148261124 5162113 complement(2356890..2357294) 1 NC_009484.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2357294 flgC 5162113 flgC Acidiphilium cryptum JF-5 flagellar basal body rod protein FlgC YP_001235251.1 2356890 R 349163 CDS YP_001235252.1 148261125 5162127 complement(2357311..2357691) 1 NC_009484.1 flagellar basal body protein-like protein 2357691 5162127 Acry_2134 Acidiphilium cryptum JF-5 flagellar basal body protein-like protein YP_001235252.1 2357311 R 349163 CDS YP_001235253.1 148261126 5162165 2358178..2358939 1 NC_009484.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2358939 fliP 5162165 fliP Acidiphilium cryptum JF-5 flagellar biosynthesis protein FliP YP_001235253.1 2358178 D 349163 CDS YP_001235254.1 148261127 5162166 complement(2358979..2360376) 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 2360376 5162166 Acry_2136 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001235254.1 2358979 R 349163 CDS YP_001235255.1 148261128 5162148 complement(2360382..2361311) 1 NC_009484.1 PFAM: Patatin; patatin 2361311 5162148 Acry_2137 Acidiphilium cryptum JF-5 patatin YP_001235255.1 2360382 R 349163 CDS YP_001235256.1 148261129 5160244 2361529..2361663 1 NC_009484.1 PFAM: ribosomal protein L34; 50S ribosomal protein L34 2361663 5160244 Acry_2138 Acidiphilium cryptum JF-5 50S ribosomal protein L34 YP_001235256.1 2361529 D 349163 CDS YP_001235257.1 148261130 5160245 2361731..2362093 1 NC_009484.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; ribonuclease P protein component 2362093 5160245 Acry_2139 Acidiphilium cryptum JF-5 ribonuclease P protein component YP_001235257.1 2361731 D 349163 CDS YP_001235258.1 148261131 5161961 2362090..2362344 1 NC_009484.1 PFAM: protein of unknown function DUF37; hypothetical protein 2362344 5161961 Acry_2140 Acidiphilium cryptum JF-5 hypothetical protein YP_001235258.1 2362090 D 349163 CDS YP_001235259.1 148261132 5159813 2362337..2364142 1 NC_009484.1 PFAM: 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 2364142 5159813 Acry_2141 Acidiphilium cryptum JF-5 60 kDa inner membrane insertion protein YP_001235259.1 2362337 D 349163 CDS YP_001235260.1 148261133 5159814 2364153..2364782 1 NC_009484.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2364782 engB 5159814 engB Acidiphilium cryptum JF-5 ribosome biogenesis GTP-binding protein YsxC YP_001235260.1 2364153 D 349163 CDS YP_001235261.1 148261134 5162081 2364831..2365841 1 NC_009484.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2365841 5162081 Acry_2143 Acidiphilium cryptum JF-5 acetylglutamate kinase YP_001235261.1 2364831 D 349163 CDS YP_001235262.1 148261135 5162031 complement(2365893..2367563) 1 NC_009484.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2367563 5162031 Acry_2144 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001235262.1 2365893 R 349163 CDS YP_001235263.1 148261136 5162032 complement(2367711..2369003) 1 NC_009484.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 2369003 5162032 Acry_2145 Acidiphilium cryptum JF-5 hypothetical protein YP_001235263.1 2367711 R 349163 CDS YP_001235264.1 148261137 5162064 2369211..2371922 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2371922 5162064 Acry_2146 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235264.1 2369211 D 349163 CDS YP_001235265.1 148261138 5162047 complement(2371998..2373110) 1 NC_009484.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2373110 5162047 Acry_2147 Acidiphilium cryptum JF-5 3-isopropylmalate dehydrogenase YP_001235265.1 2371998 R 349163 CDS YP_001235266.1 148261139 5162048 complement(2373164..2373787) 1 NC_009484.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 2373787 5162048 Acry_2148 Acidiphilium cryptum JF-5 3-isopropylmalate dehydratase small subunit YP_001235266.1 2373164 R 349163 CDS YP_001235267.1 148261140 5162066 complement(2373784..2375184) 1 NC_009484.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2375184 5162066 Acry_2149 Acidiphilium cryptum JF-5 isopropylmalate isomerase large subunit YP_001235267.1 2373784 R 349163 CDS YP_001235268.1 148261141 5162513 complement(2375410..2375784) 1 NC_009484.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2375784 rplS 5162513 rplS Acidiphilium cryptum JF-5 50S ribosomal protein L19 YP_001235268.1 2375410 R 349163 CDS YP_001235269.1 148261142 5162514 complement(2375812..2376516) 1 NC_009484.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 2376516 5162514 Acry_2151 Acidiphilium cryptum JF-5 tRNA (guanine-N1)-methyltransferase YP_001235269.1 2375812 R 349163 CDS YP_001235270.1 148261143 5162512 complement(2376513..2377022) 1 NC_009484.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; 16S rRNA processing protein RimM 2377022 5162512 Acry_2152 Acidiphilium cryptum JF-5 16S rRNA processing protein RimM YP_001235270.1 2376513 R 349163 CDS YP_001235271.1 148261144 5160142 complement(2377038..2377382) 1 NC_009484.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2377382 rpsP 5160142 rpsP Acidiphilium cryptum JF-5 30S ribosomal protein S16 YP_001235271.1 2377038 R 349163 CDS YP_001235272.1 148261145 5160143 complement(2377538..2378911) 1 NC_009484.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein 2378911 5160143 Acry_2154 Acidiphilium cryptum JF-5 signal recognition particle protein YP_001235272.1 2377538 R 349163 CDS YP_001235273.1 148261146 5162430 complement(2379081..2380499) 1 NC_009484.1 PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 2380499 5162430 Acry_2155 Acidiphilium cryptum JF-5 NAD(P)(+) transhydrogenase YP_001235273.1 2379081 R 349163 CDS YP_001235274.1 148261147 5162151 complement(2380513..2380908) 1 NC_009484.1 NAD/NADP transhydrogenase subunit alpha-like protein 2380908 5162151 Acry_2156 Acidiphilium cryptum JF-5 NAD/NADP transhydrogenase subunit alpha-like protein YP_001235274.1 2380513 R 349163 CDS YP_001235275.1 148261148 5162152 complement(2380919..2382061) 1 NC_009484.1 PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 2382061 5162152 Acry_2157 Acidiphilium cryptum JF-5 NAD(P) transhydrogenase subunit alpha YP_001235275.1 2380919 R 349163 CDS YP_001235276.1 148261149 5162122 2382291..2382941 1 NC_009484.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2382941 5162122 Acry_2158 Acidiphilium cryptum JF-5 ATP-dependent Clp protease proteolytic subunit YP_001235276.1 2382291 D 349163 CDS YP_001235277.1 148261150 5162146 complement(2382962..2383873) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2383873 5162146 Acry_2159 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235277.1 2382962 R 349163 CDS YP_001235278.1 148261151 5162147 2384032..2384577 1 NC_009484.1 hypothetical protein 2384577 5162147 Acry_2160 Acidiphilium cryptum JF-5 hypothetical protein YP_001235278.1 2384032 D 349163 CDS YP_001235279.1 148261152 5162111 2384650..2385549 1 NC_009484.1 PFAM: GntR domain protein; GntR family transcriptional regulator 2385549 5162111 Acry_2161 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001235279.1 2384650 D 349163 CDS YP_001235280.1 148261153 5162443 complement(2385571..2387085) 1 NC_009484.1 PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq 2387085 5162443 Acry_2162 Acidiphilium cryptum JF-5 carboxypeptidase Taq YP_001235280.1 2385571 R 349163 CDS YP_001235281.1 148261154 5162444 complement(2387082..2387798) 1 NC_009484.1 hypothetical protein 2387798 5162444 Acry_2163 Acidiphilium cryptum JF-5 hypothetical protein YP_001235281.1 2387082 R 349163 CDS YP_001235282.1 148261155 5162468 complement(2387803..2388654) 1 NC_009484.1 PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 2388654 5162468 Acry_2164 Acidiphilium cryptum JF-5 cytochrome c oxidase subunit III YP_001235282.1 2387803 R 349163 CDS YP_001235283.1 148261156 5162027 complement(2388873..2389826) 1 NC_009484.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 2389826 5162027 Acry_2165 Acidiphilium cryptum JF-5 protoheme IX farnesyltransferase YP_001235283.1 2388873 R 349163 CDS YP_001235284.1 148261157 5162028 complement(2389946..2391544) 1 NC_009484.1 PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase 2391544 5162028 Acry_2166 Acidiphilium cryptum JF-5 cytochrome-c oxidase YP_001235284.1 2389946 R 349163 CDS YP_001235285.1 148261158 5162051 complement(2391578..2392528) 1 NC_009484.1 PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; cytochrome c oxidase subunit II 2392528 5162051 Acry_2167 Acidiphilium cryptum JF-5 cytochrome c oxidase subunit II YP_001235285.1 2391578 R 349163 CDS YP_001235286.1 148261159 5162025 complement(2392691..2393404) 1 NC_009484.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; phosphatidylethanolamine N-methyltransferase 2393404 5162025 Acry_2168 Acidiphilium cryptum JF-5 phosphatidylethanolamine N-methyltransferase YP_001235286.1 2392691 R 349163 CDS YP_001235287.1 148261160 5162026 complement(2393590..2394117) 1 NC_009484.1 PFAM: GcrA cell cycle regulator; GcrA cell cycle regulator 2394117 5162026 Acry_2169 Acidiphilium cryptum JF-5 GcrA cell cycle regulator YP_001235287.1 2393590 R 349163 CDS YP_001235288.1 148261161 5162033 complement(2394233..2394766) 1 NC_009484.1 PFAM: protein of unknown function DUF1058; hypothetical protein 2394766 5162033 Acry_2170 Acidiphilium cryptum JF-5 hypothetical protein YP_001235288.1 2394233 R 349163 CDS YP_001235289.1 148261162 5162029 complement(2394753..2395520) 1 NC_009484.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; UBA/THIF-type NAD/FAD binding protein 2395520 5162029 Acry_2171 Acidiphilium cryptum JF-5 UBA/THIF-type NAD/FAD binding protein YP_001235289.1 2394753 R 349163 CDS YP_001235290.1 148261163 5162116 2396626..2398038 1 NC_009484.1 2-nitropropane dioxygenase 2398038 5162116 Acry_2173 Acidiphilium cryptum JF-5 2-nitropropane dioxygenase YP_001235290.1 2396626 D 349163 CDS YP_001235291.1 148261164 5161988 complement(2398168..2400522) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2400522 5161988 Acry_2174 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001235291.1 2398168 R 349163 CDS YP_001235292.1 148261165 5162213 complement(2400519..2401004) 1 NC_009484.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2401004 5162213 Acry_2175 Acidiphilium cryptum JF-5 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001235292.1 2400519 R 349163 CDS YP_001235293.1 148261166 5162214 complement(2400989..2401816) 1 NC_009484.1 PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 2401816 5162214 Acry_2176 Acidiphilium cryptum JF-5 molybdopterin dehydrogenase YP_001235293.1 2400989 R 349163 CDS YP_001235294.1 148261167 5162509 complement(2401884..2403209) 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 2403209 5162509 Acry_2177 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235294.1 2401884 R 349163 CDS YP_001235295.1 148261168 5161710 complement(2403597..2404961) 1 NC_009484.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 2404961 5161710 Acry_2178 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001235295.1 2403597 R 349163 CDS YP_001235296.1 148261169 5161711 complement(2404958..2405746) 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2405746 5161711 Acry_2179 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001235296.1 2404958 R 349163 CDS YP_001235297.1 148261170 5161642 2405980..2407110 1 NC_009484.1 PFAM: Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 2407110 5161642 Acry_2180 Acidiphilium cryptum JF-5 Orn/DAP/Arg decarboxylase 2 YP_001235297.1 2405980 D 349163 CDS YP_001235298.1 148261171 5161675 2407144..2407896 1 NC_009484.1 PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 2407896 5161675 Acry_2181 Acidiphilium cryptum JF-5 carboxymethylenebutenolidase YP_001235298.1 2407144 D 349163 CDS YP_001235299.1 148261172 5161676 2407899..2409122 1 NC_009484.1 hypothetical protein 2409122 5161676 Acry_2182 Acidiphilium cryptum JF-5 hypothetical protein YP_001235299.1 2407899 D 349163 CDS YP_001235300.1 148261173 5161348 2409226..2412213 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2412213 5161348 Acry_2183 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235300.1 2409226 D 349163 CDS YP_001235301.1 148261174 5161316 complement(2412315..2414981) 1 NC_009484.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 2414981 5161316 Acry_2184 Acidiphilium cryptum JF-5 pyruvate phosphate dikinase YP_001235301.1 2412315 R 349163 CDS YP_001235302.1 148261175 5161317 complement(2414989..2417160) 1 NC_009484.1 glycine--tRNA ligase 2417160 5161317 Acry_2185 Acidiphilium cryptum JF-5 glycine--tRNA ligase YP_001235302.1 2414989 R 349163 CDS YP_001235303.1 148261176 5161436 complement(2417153..2418058) 1 NC_009484.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2418058 glyQ 5161436 glyQ Acidiphilium cryptum JF-5 glycyl-tRNA synthetase subunit alpha YP_001235303.1 2417153 R 349163 CDS YP_001235304.1 148261177 5161331 2418126..2418530 1 NC_009484.1 hypothetical protein 2418530 5161331 Acry_2187 Acidiphilium cryptum JF-5 hypothetical protein YP_001235304.1 2418126 D 349163 CDS YP_001235305.1 148261178 5161332 2418517..2419689 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2419689 5161332 Acry_2188 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001235305.1 2418517 D 349163 CDS YP_001235306.1 148261179 5162553 2419751..2420707 1 NC_009484.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2420707 5162553 Acry_2189 Acidiphilium cryptum JF-5 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_001235306.1 2419751 D 349163 CDS YP_001235307.1 148261180 5162576 2420804..2421424 1 NC_009484.1 hypothetical protein 2421424 5162576 Acry_2190 Acidiphilium cryptum JF-5 hypothetical protein YP_001235307.1 2420804 D 349163 CDS YP_001235308.1 148261181 5162577 complement(2421470..2422333) 1 NC_009484.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 2422333 5162577 Acry_2191 Acidiphilium cryptum JF-5 spermidine synthase YP_001235308.1 2421470 R 349163 CDS YP_001235309.1 148261182 5161049 complement(2422403..2422867) 1 NC_009484.1 PFAM: S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase-like protein 2422867 5161049 Acry_2192 Acidiphilium cryptum JF-5 S-adenosylmethionine decarboxylase-like protein YP_001235309.1 2422403 R 349163 CDS YP_001235310.1 148261183 5161076 complement(2423034..2423792) 1 NC_009484.1 hypothetical protein 2423792 5161076 Acry_2193 Acidiphilium cryptum JF-5 hypothetical protein YP_001235310.1 2423034 R 349163 CDS YP_001235311.1 148261184 5161077 2423851..2424990 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2424990 5161077 Acry_2194 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001235311.1 2423851 D 349163 CDS YP_001235312.1 148261185 5162539 2424987..2425925 1 NC_009484.1 PFAM: glycosyl transferase, family 9; glycosyl transferase family protein 2425925 5162539 Acry_2195 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235312.1 2424987 D 349163 CDS YP_001235313.1 148261186 5162563 2425937..2427859 1 NC_009484.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2427859 thrS 5162563 thrS Acidiphilium cryptum JF-5 threonyl-tRNA synthetase YP_001235313.1 2425937 D 349163 CDS YP_001235314.1 148261187 5162564 2428135..2428776 1 NC_009484.1 hypothetical protein 2428776 5162564 Acry_2197 Acidiphilium cryptum JF-5 hypothetical protein YP_001235314.1 2428135 D 349163 CDS YP_001235315.1 148261188 5160373 2428944..2429531 1 NC_009484.1 hypothetical protein 2429531 5160373 Acry_2198 Acidiphilium cryptum JF-5 hypothetical protein YP_001235315.1 2428944 D 349163 CDS YP_001235316.1 148261189 5160803 complement(2429554..2430375) 1 NC_009484.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; beta-ketoadipate pathway transcription regulator 2430375 5160803 Acry_2199 Acidiphilium cryptum JF-5 beta-ketoadipate pathway transcription regulator YP_001235316.1 2429554 R 349163 CDS YP_001235317.1 148261190 5160804 complement(2430570..2431055) 1 NC_009484.1 PFAM: OsmC family protein; OsmC family protein 2431055 5160804 Acry_2200 Acidiphilium cryptum JF-5 OsmC family protein YP_001235317.1 2430570 R 349163 CDS YP_001235318.1 148261191 5160190 complement(2431094..2431795) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2431795 5160190 Acry_2201 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235318.1 2431094 R 349163 CDS YP_001235319.1 148261192 5162542 complement(2431800..2432507) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2432507 5162542 Acry_2202 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235319.1 2431800 R 349163 CDS YP_001235320.1 148261193 5162543 complement(2432497..2433405) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 2433405 5162543 Acry_2203 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235320.1 2432497 R 349163 CDS YP_001235321.1 148261194 5159862 complement(2433419..2434300) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 2434300 5159862 Acry_2204 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235321.1 2433419 R 349163 CDS YP_001235322.1 148261195 5159799 complement(2434402..2435658) 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 2435658 5159799 Acry_2205 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001235322.1 2434402 R 349163 CDS YP_001235323.1 148261196 5159800 complement(2435779..2436795) 1 NC_009484.1 hypothetical protein 2436795 5159800 Acry_2206 Acidiphilium cryptum JF-5 hypothetical protein YP_001235323.1 2435779 R 349163 CDS YP_001235324.1 148261197 5160599 2436881..2437147 1 NC_009484.1 hypothetical protein 2437147 5160599 Acry_2207 Acidiphilium cryptum JF-5 hypothetical protein YP_001235324.1 2436881 D 349163 CDS YP_001235325.1 148261198 5159808 2437362..2439671 1 NC_009484.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2439671 5159808 Acry_2208 Acidiphilium cryptum JF-5 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001235325.1 2437362 D 349163 CDS YP_001235326.1 148261199 5159809 2439791..2440972 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2440972 5159809 Acry_2209 Acidiphilium cryptum JF-5 major facilitator superfamily transporter YP_001235326.1 2439791 D 349163 CDS YP_001235327.1 148261200 5160208 2441086..2442816 1 NC_009484.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2442816 5160208 Acry_2210 Acidiphilium cryptum JF-5 dihydroxy-acid dehydratase YP_001235327.1 2441086 D 349163 CDS YP_001235328.1 148261201 5160115 2442923..2445298 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon-monoxide dehydrogenase 2445298 5160115 Acry_2211 Acidiphilium cryptum JF-5 carbon-monoxide dehydrogenase YP_001235328.1 2442923 D 349163 CDS YP_001235329.1 148261202 5160116 complement(2445358..2446101) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2446101 5160116 Acry_2212 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235329.1 2445358 R 349163 CDS YP_001235330.1 148261203 5159930 complement(2446312..2447298) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2447298 5159930 Acry_2213 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235330.1 2446312 R 349163 CDS YP_001235331.1 148261204 5160022 complement(2447295..2448278) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2448278 5160022 Acry_2214 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235331.1 2447295 R 349163 CDS YP_001235332.1 148261205 5160023 complement(2448275..2449804) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2449804 5160023 Acry_2215 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235332.1 2448275 R 349163 CDS YP_001235333.1 148261206 5160148 complement(2449820..2450857) 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2450857 5160148 Acry_2216 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001235333.1 2449820 R 349163 CDS YP_001235334.1 148261207 5160252 complement(2451299..2451700) 1 NC_009484.1 DNA replication protein-like protein 2451700 5160252 Acry_2217 Acidiphilium cryptum JF-5 DNA replication protein-like protein YP_001235334.1 2451299 R 349163 CDS YP_001235335.1 148261208 5160253 complement(2451894..2452499) 1 NC_009484.1 PFAM: transcriptional regulator PadR family protein; PadR-like family transcriptional regulator 2452499 5160253 Acry_2218 Acidiphilium cryptum JF-5 PadR-like family transcriptional regulator YP_001235335.1 2451894 R 349163 CDS YP_001235336.1 148261209 5161828 complement(2452764..2453012) 1 NC_009484.1 CopG/Arc/MetJ family transcriptional regulator 2453012 5161828 Acry_2219 Acidiphilium cryptum JF-5 CopG/Arc/MetJ family transcriptional regulator YP_001235336.1 2452764 R 349163 CDS YP_001235337.1 148261210 5162486 2453275..2453562 1 NC_009484.1 hypothetical protein 2453562 5162486 Acry_2220 Acidiphilium cryptum JF-5 hypothetical protein YP_001235337.1 2453275 D 349163 CDS YP_001235338.1 148261211 5162004 complement(2454391..2455080) 1 NC_009484.1 hypothetical protein 2455080 5162004 Acry_2222 Acidiphilium cryptum JF-5 hypothetical protein YP_001235338.1 2454391 R 349163 CDS YP_001235339.1 148261212 5162484 complement(2455386..2455922) 1 NC_009484.1 hypothetical protein 2455922 5162484 Acry_2223 Acidiphilium cryptum JF-5 hypothetical protein YP_001235339.1 2455386 R 349163 CDS YP_001235340.1 148261213 5162005 complement(2456273..2456566) 1 NC_009484.1 hypothetical protein 2456566 5162005 Acry_2225 Acidiphilium cryptum JF-5 hypothetical protein YP_001235340.1 2456273 R 349163 CDS YP_001235341.1 148261214 5162358 complement(2456767..2457048) 1 NC_009484.1 hypothetical protein 2457048 5162358 Acry_2226 Acidiphilium cryptum JF-5 hypothetical protein YP_001235341.1 2456767 R 349163 CDS YP_001235342.1 148261215 5162248 2457060..2458406 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 2458406 5162248 Acry_2227 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001235342.1 2457060 D 349163 CDS YP_001235343.1 148261216 5159747 complement(2458551..2459771) 1 NC_009484.1 PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase dimerisation domain-containing protein 2459771 5159747 Acry_2228 Acidiphilium cryptum JF-5 peptidase dimerisation domain-containing protein YP_001235343.1 2458551 R 349163 CDS YP_001235344.1 148261217 5159748 complement(2459773..2460960) 1 NC_009484.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2460960 5159748 Acry_2229 Acidiphilium cryptum JF-5 amidohydrolase YP_001235344.1 2459773 R 349163 CDS YP_001235345.1 148261218 5159955 complement(2461609..2462079) 1 NC_009484.1 hypothetical protein 2462079 5159955 Acry_2230 Acidiphilium cryptum JF-5 hypothetical protein YP_001235345.1 2461609 R 349163 CDS YP_001235346.1 148261219 5159999 complement(2462369..2463277) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2463277 5159999 Acry_2231 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235346.1 2462369 R 349163 CDS YP_001235347.1 148261220 5160000 2463377..2464138 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2464138 5160000 Acry_2232 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235347.1 2463377 D 349163 CDS YP_001235348.1 148261221 5162231 2464288..2464965 1 NC_009484.1 PFAM: Asp/Glu racemase; Asp/Glu racemase 2464965 5162231 Acry_2233 Acidiphilium cryptum JF-5 Asp/Glu racemase YP_001235348.1 2464288 D 349163 CDS YP_001235349.1 148261222 5160239 2465204..2466130 1 NC_009484.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 2466130 5160239 Acry_2234 Acidiphilium cryptum JF-5 threonine dehydratase YP_001235349.1 2465204 D 349163 CDS YP_001235350.1 148261223 5162039 complement(2467182..2468168) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2468168 5162039 Acry_2236 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235350.1 2467182 R 349163 CDS YP_001235351.1 148261224 5160223 complement(2468165..2469148) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2469148 5160223 Acry_2237 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235351.1 2468165 R 349163 CDS YP_001235352.1 148261225 5160625 complement(2469145..2470659) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2470659 5160625 Acry_2238 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235352.1 2469145 R 349163 CDS YP_001235353.1 148261226 5160626 complement(2470665..2471696) 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2471696 5160626 Acry_2239 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001235353.1 2470665 R 349163 CDS YP_001235354.1 148261227 5161991 2471963..2472751 1 NC_009484.1 PFAM: regulatory protein, IclR; regulatory protein, IclR 2472751 5161991 Acry_2240 Acidiphilium cryptum JF-5 regulatory protein, IclR YP_001235354.1 2471963 D 349163 CDS YP_001235355.1 148261228 5160656 2473227..2475167 1 NC_009484.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 2475167 5160656 Acry_2241 Acidiphilium cryptum JF-5 peptidoglycan glycosyltransferase YP_001235355.1 2473227 D 349163 CDS YP_001235356.1 148261229 5160657 2475225..2475914 1 NC_009484.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2475914 5160657 Acry_2242 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001235356.1 2475225 D 349163 CDS YP_001235357.1 148261230 5161788 complement(2476217..2476780) 1 NC_009484.1 PFAM: beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 2476780 5161788 Acry_2243 Acidiphilium cryptum JF-5 beta-Ig-H3/fasciclin YP_001235357.1 2476217 R 349163 CDS YP_001235358.1 148261231 5160929 complement(2476936..2478165) 1 NC_009484.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 2478165 argJ 5160929 argJ Acidiphilium cryptum JF-5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001235358.1 2476936 R 349163 CDS YP_001235359.1 148261232 5160930 complement(2478176..2479111) 1 NC_009484.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2479111 5160930 Acry_2245 Acidiphilium cryptum JF-5 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001235359.1 2478176 R 349163 CDS YP_001235360.1 148261233 5161811 2479294..2482113 1 NC_009484.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2482113 secA 5161811 secA Acidiphilium cryptum JF-5 preprotein translocase subunit SecA YP_001235360.1 2479294 D 349163 CDS YP_001235361.1 148261234 5161972 2482118..2482648 1 NC_009484.1 hypothetical protein 2482648 5161972 Acry_2247 Acidiphilium cryptum JF-5 hypothetical protein YP_001235361.1 2482118 D 349163 CDS YP_001235362.1 148261235 5161973 complement(2482744..2483208) 1 NC_009484.1 PFAM: regulatory protein, MarR; transcriptional regulator TrmB; transcriptional regulator TrmB 2483208 5161973 Acry_2248 Acidiphilium cryptum JF-5 transcriptional regulator TrmB YP_001235362.1 2482744 R 349163 CDS YP_001235363.1 148261236 5162101 complement(2483365..2483856) 1 NC_009484.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2483856 rpsI 5162101 rpsI Acidiphilium cryptum JF-5 30S ribosomal protein S9 YP_001235363.1 2483365 R 349163 CDS YP_001235364.1 148261237 5162089 complement(2483859..2484335) 1 NC_009484.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2484335 rplM 5162089 rplM Acidiphilium cryptum JF-5 50S ribosomal protein L13 YP_001235364.1 2483859 R 349163 CDS YP_001235365.1 148261238 5162090 complement(2484427..2485359) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 2485359 5162090 Acry_2251 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001235365.1 2484427 R 349163 CDS YP_001235366.1 148261239 5162562 complement(2485385..2485978) 1 NC_009484.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; polyhydroxyalkonate synthesis repressor PhaR 2485978 5162562 Acry_2252 Acidiphilium cryptum JF-5 polyhydroxyalkonate synthesis repressor PhaR YP_001235366.1 2485385 R 349163 CDS YP_001235367.1 148261240 5162350 complement(2486088..2486858) 1 NC_009484.1 PFAM: protein of unknown function DUF81; hypothetical protein 2486858 5162350 Acry_2253 Acidiphilium cryptum JF-5 hypothetical protein YP_001235367.1 2486088 R 349163 CDS YP_001235368.1 148261241 5162351 2486931..2487329 1 NC_009484.1 hypothetical protein 2487329 5162351 Acry_2254 Acidiphilium cryptum JF-5 hypothetical protein YP_001235368.1 2486931 D 349163 CDS YP_001235369.1 148261242 5162119 2487343..2488338 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2488338 5162119 Acry_2255 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001235369.1 2487343 D 349163 CDS YP_001235370.1 148261243 5162009 2488395..2489567 1 NC_009484.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2489567 5162009 Acry_2256 Acidiphilium cryptum JF-5 acetyl-CoA acetyltransferase YP_001235370.1 2488395 D 349163 CDS YP_001235371.1 148261244 5162010 2489592..2490293 1 NC_009484.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2490293 5162010 Acry_2257 Acidiphilium cryptum JF-5 3-oxoacid CoA-transferase subunit A YP_001235371.1 2489592 D 349163 CDS YP_001235372.1 148261245 5161945 2490304..2490984 1 NC_009484.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2490984 5161945 Acry_2258 Acidiphilium cryptum JF-5 3-oxoacid CoA-transferase subunit B YP_001235372.1 2490304 D 349163 CDS YP_001235373.1 148261246 5160861 2490981..2492261 1 NC_009484.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase, class I and II; aminotransferase class-III; 4-aminobutyrate aminotransferase 2492261 5160861 Acry_2259 Acidiphilium cryptum JF-5 4-aminobutyrate aminotransferase YP_001235373.1 2490981 D 349163 CDS YP_001235374.1 148261247 5160862 complement(2492268..2494301) 1 NC_009484.1 hypothetical protein 2494301 5160862 Acry_2260 Acidiphilium cryptum JF-5 hypothetical protein YP_001235374.1 2492268 R 349163 CDS YP_001235375.1 148261248 5159628 complement(2494355..2494741) 1 NC_009484.1 PFAM: protein of unknown function UPF0102; hypothetical protein 2494741 5159628 Acry_2261 Acidiphilium cryptum JF-5 hypothetical protein YP_001235375.1 2494355 R 349163 CDS YP_001235376.1 148261249 5161548 2494956..2495837 1 NC_009484.1 PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2495837 5161548 Acry_2262 Acidiphilium cryptum JF-5 helix-turn-helix domain-containing protein YP_001235376.1 2494956 D 349163 CDS YP_001235377.1 148261250 5161549 2495890..2496744 1 NC_009484.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 2496744 5161549 Acry_2263 Acidiphilium cryptum JF-5 rhodanese domain-containing protein YP_001235377.1 2495890 D 349163 CDS YP_001235378.1 148261251 5162534 2496741..2497997 1 NC_009484.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; cystathionine beta-lyase 2497997 5162534 Acry_2264 Acidiphilium cryptum JF-5 cystathionine beta-lyase YP_001235378.1 2496741 D 349163 CDS YP_001235379.1 148261252 5161579 2497994..2498344 1 NC_009484.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 2498344 5161579 Acry_2265 Acidiphilium cryptum JF-5 phosphoribosyl-AMP cyclohydrolase YP_001235379.1 2497994 D 349163 CDS YP_001235380.1 148261253 5161580 complement(2498489..2498860) 1 NC_009484.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein 2498860 5161580 Acry_2266 Acidiphilium cryptum JF-5 iron-sulfur cluster assembly accessory protein YP_001235380.1 2498489 R 349163 CDS YP_001235381.1 148261254 5162455 complement(2498871..2499236) 1 NC_009484.1 PFAM: protein of unknown function DUF59; hypothetical protein 2499236 5162455 Acry_2267 Acidiphilium cryptum JF-5 hypothetical protein YP_001235381.1 2498871 R 349163 CDS YP_001235382.1 148261255 5162352 complement(2499226..2499681) 1 NC_009484.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; NifU family SUF system FeS assembly protein 2499681 5162352 Acry_2268 Acidiphilium cryptum JF-5 NifU family SUF system FeS assembly protein YP_001235382.1 2499226 R 349163 CDS YP_001235383.1 148261256 5162353 complement(2499678..2500922) 1 NC_009484.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; SufS subfamily cysteine desulfurase 2500922 5162353 Acry_2269 Acidiphilium cryptum JF-5 SufS subfamily cysteine desulfurase YP_001235383.1 2499678 R 349163 CDS YP_001235384.1 148261257 5161289 complement(2500919..2502118) 1 NC_009484.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD 2502118 5161289 Acry_2270 Acidiphilium cryptum JF-5 FeS assembly protein SufD YP_001235384.1 2500919 R 349163 CDS YP_001235385.1 148261258 5159832 complement(2502115..2502858) 1 NC_009484.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 2502858 5159832 Acry_2271 Acidiphilium cryptum JF-5 FeS assembly ATPase SufC YP_001235385.1 2502115 R 349163 CDS YP_001235386.1 148261259 5159833 complement(2502868..2504319) 1 NC_009484.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2504319 5159833 Acry_2272 Acidiphilium cryptum JF-5 cysteine desulfurase activator complex subunit SufB YP_001235386.1 2502868 R 349163 CDS YP_001235387.1 148261260 5160295 complement(2504499..2504792) 1 NC_009484.1 PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 2504792 5160295 Acry_2273 Acidiphilium cryptum JF-5 BadM/Rrf2 family transcriptional regulator YP_001235387.1 2504499 R 349163 CDS YP_001235388.1 148261261 5160735 complement(2504917..2505567) 1 NC_009484.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 2505567 5160735 Acry_2274 Acidiphilium cryptum JF-5 phosphoglycolate phosphatase YP_001235388.1 2504917 R 349163 CDS YP_001235389.1 148261262 5160736 2505640..2506953 1 NC_009484.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2506953 glmU 5160736 glmU Acidiphilium cryptum JF-5 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001235389.1 2505640 D 349163 CDS YP_001235390.1 148261263 5160867 2506953..2508776 1 NC_009484.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2508776 5160867 Acry_2276 Acidiphilium cryptum JF-5 glucosamine--fructose-6-phosphate aminotransferase YP_001235390.1 2506953 D 349163 CDS YP_001235391.1 148261264 5161371 complement(2508851..2509501) 1 NC_009484.1 hypothetical protein 2509501 5161371 Acry_2277 Acidiphilium cryptum JF-5 hypothetical protein YP_001235391.1 2508851 R 349163 CDS YP_001235392.1 148261265 5161372 2509554..2509718 1 NC_009484.1 hypothetical protein 2509718 5161372 Acry_2278 Acidiphilium cryptum JF-5 hypothetical protein YP_001235392.1 2509554 D 349163 CDS YP_001235393.1 148261266 5161600 complement(2509890..2510189) 1 NC_009484.1 hypothetical protein 2510189 5161600 Acry_2279 Acidiphilium cryptum JF-5 hypothetical protein YP_001235393.1 2509890 R 349163 CDS YP_001235394.1 148261267 5161280 complement(2510365..2510853) 1 NC_009484.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; bacteriochlorophyll 4-vinyl reductase 2510853 5161280 Acry_2280 Acidiphilium cryptum JF-5 bacteriochlorophyll 4-vinyl reductase YP_001235394.1 2510365 R 349163 CDS YP_001235395.1 148261268 5161281 complement(2510964..2512526) 1 NC_009484.1 TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2512526 5161281 Acry_2281 Acidiphilium cryptum JF-5 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase YP_001235395.1 2510964 R 349163 CDS YP_001235396.1 148261269 5161858 complement(2512789..2513097) 1 NC_009484.1 hypothetical protein 2513097 5161858 Acry_2282 Acidiphilium cryptum JF-5 hypothetical protein YP_001235396.1 2512789 R 349163 CDS YP_001235397.1 148261270 5161837 2513175..2513567 1 NC_009484.1 hypothetical protein 2513567 5161837 Acry_2283 Acidiphilium cryptum JF-5 hypothetical protein YP_001235397.1 2513175 D 349163 CDS YP_001235398.1 148261271 5161838 2513607..2514044 1 NC_009484.1 hypothetical protein 2514044 5161838 Acry_2284 Acidiphilium cryptum JF-5 hypothetical protein YP_001235398.1 2513607 D 349163 CDS YP_001235399.1 148261272 5160058 complement(2514351..2515106) 1 NC_009484.1 PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase 2515106 5160058 Acry_2285 Acidiphilium cryptum JF-5 HpcH/HpaI aldolase YP_001235399.1 2514351 R 349163 CDS YP_001235400.1 148261273 5159869 2515183..2515863 1 NC_009484.1 TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15, pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 2515863 5159869 Acry_2286 Acidiphilium cryptum JF-5 pyrrolidone-carboxylate peptidase YP_001235400.1 2515183 D 349163 CDS YP_001235401.1 148261274 5159870 complement(2516160..2516996) 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2516996 5159870 Acry_2287 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001235401.1 2516160 R 349163 CDS YP_001235402.1 148261275 5159508 complement(2517021..2518955) 1 NC_009484.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate--CoA ligase 2518955 5159508 Acry_2288 Acidiphilium cryptum JF-5 acetate--CoA ligase YP_001235402.1 2517021 R 349163 CDS YP_001235403.1 148261276 5159788 complement(2519040..2521313) 1 NC_009484.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 2521313 5159788 Acry_2289 Acidiphilium cryptum JF-5 malic enzyme YP_001235403.1 2519040 R 349163 CDS YP_001235404.1 148261277 5162040 2521571..2522257 1 NC_009484.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 2522257 lipB 5162040 lipB Acidiphilium cryptum JF-5 lipoate-protein ligase B YP_001235404.1 2521571 D 349163 CDS YP_001235405.1 148261278 5160084 complement(2522262..2523728) 1 NC_009484.1 PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2523728 5160084 Acry_2291 Acidiphilium cryptum JF-5 polysaccharide biosynthesis protein YP_001235405.1 2522262 R 349163 CDS YP_001235406.1 148261279 5161902 complement(2524519..2524788) 1 NC_009484.1 hypothetical protein 2524788 5161902 Acry_2292 Acidiphilium cryptum JF-5 hypothetical protein YP_001235406.1 2524519 R 349163 CDS YP_001235407.1 148261280 5160106 2525298..2525558 1 NC_009484.1 hypothetical protein 2525558 5160106 Acry_2293 Acidiphilium cryptum JF-5 hypothetical protein YP_001235407.1 2525298 D 349163 CDS YP_001235408.1 148261281 5160178 complement(2525578..2525901) 1 NC_009484.1 hypothetical protein 2525901 5160178 Acry_2294 Acidiphilium cryptum JF-5 hypothetical protein YP_001235408.1 2525578 R 349163 CDS YP_001235409.1 148261282 5160224 complement(2526379..2526639) 1 NC_009484.1 hypothetical protein 2526639 5160224 Acry_2295 Acidiphilium cryptum JF-5 hypothetical protein YP_001235409.1 2526379 R 349163 CDS YP_001235410.1 148261283 5160225 complement(2526743..2528584) 1 NC_009484.1 hypothetical protein 2528584 5160225 Acry_2296 Acidiphilium cryptum JF-5 hypothetical protein YP_001235410.1 2526743 R 349163 CDS YP_001235411.1 148261284 5160097 complement(2528675..2528980) 1 NC_009484.1 hypothetical protein 2528980 5160097 Acry_2297 Acidiphilium cryptum JF-5 hypothetical protein YP_001235411.1 2528675 R 349163 CDS YP_001235412.1 148261285 5159732 complement(2528977..2529624) 1 NC_009484.1 hypothetical protein 2529624 5159732 Acry_2298 Acidiphilium cryptum JF-5 hypothetical protein YP_001235412.1 2528977 R 349163 CDS YP_001235413.1 148261286 5159733 complement(2529636..2529881) 1 NC_009484.1 hypothetical protein 2529881 5159733 Acry_2299 Acidiphilium cryptum JF-5 hypothetical protein YP_001235413.1 2529636 R 349163 CDS YP_001235414.1 148261287 5159698 complement(2530195..2530668) 1 NC_009484.1 hypothetical protein 2530668 5159698 Acry_2300 Acidiphilium cryptum JF-5 hypothetical protein YP_001235414.1 2530195 R 349163 CDS YP_001235415.1 148261288 5159608 complement(2530665..2532038) 1 NC_009484.1 hypothetical protein 2532038 5159608 Acry_2301 Acidiphilium cryptum JF-5 hypothetical protein YP_001235415.1 2530665 R 349163 CDS YP_001235416.1 148261289 5159609 complement(2532686..2533432) 1 NC_009484.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 2533432 5159609 Acry_2302 Acidiphilium cryptum JF-5 IstB ATP binding domain-containing protein YP_001235416.1 2532686 R 349163 CDS YP_001235417.1 148261290 5159456 complement(2533450..2534997) 1 NC_009484.1 PFAM: Integrase, catalytic region; integrase catalytic subunit 2534997 5159456 Acry_2303 Acidiphilium cryptum JF-5 integrase catalytic subunit YP_001235417.1 2533450 R 349163 CDS YP_001235418.1 148261291 5159938 complement(2535115..2535591) 1 NC_009484.1 hypothetical protein 2535591 5159938 Acry_2304 Acidiphilium cryptum JF-5 hypothetical protein YP_001235418.1 2535115 R 349163 CDS YP_001235419.1 148261292 5159939 complement(2535591..2536025) 1 NC_009484.1 hypothetical protein 2536025 5159939 Acry_2305 Acidiphilium cryptum JF-5 hypothetical protein YP_001235419.1 2535591 R 349163 CDS YP_001235420.1 148261293 5159501 complement(2536284..2536931) 1 NC_009484.1 hypothetical protein 2536931 5159501 Acry_2306 Acidiphilium cryptum JF-5 hypothetical protein YP_001235420.1 2536284 R 349163 CDS YP_001235421.1 148261294 5159499 complement(2537128..2537379) 1 NC_009484.1 hypothetical protein 2537379 5159499 Acry_2307 Acidiphilium cryptum JF-5 hypothetical protein YP_001235421.1 2537128 R 349163 CDS YP_001235422.1 148261295 5159500 complement(2537376..2537780) 1 NC_009484.1 hypothetical protein 2537780 5159500 Acry_2308 Acidiphilium cryptum JF-5 hypothetical protein YP_001235422.1 2537376 R 349163 CDS YP_001235423.1 148261296 5159551 complement(2538067..2539299) 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 2539299 5159551 Acry_2309 Acidiphilium cryptum JF-5 phage integrase family protein YP_001235423.1 2538067 R 349163 CDS YP_001235424.1 148261297 5159885 2539799..2540605 1 NC_009484.1 hypothetical protein 2540605 5159885 Acry_2310 Acidiphilium cryptum JF-5 hypothetical protein YP_001235424.1 2539799 D 349163 CDS YP_001235425.1 148261298 5159886 complement(2540505..2541326) 1 NC_009484.1 transposase 2541326 5159886 Acry_2311 Acidiphilium cryptum JF-5 transposase YP_001235425.1 2540505 R 349163 CDS YP_001235426.1 148261299 5161943 complement(2541879..2542673) 1 NC_009484.1 PFAM: Myo-inositol catabolism IolB domain protein; myo-inositol catabolism IolB domain-containing protein 2542673 5161943 Acry_2313 Acidiphilium cryptum JF-5 myo-inositol catabolism IolB domain-containing protein YP_001235426.1 2541879 R 349163 CDS YP_001235427.1 148261300 5159762 complement(2542705..2544543) 1 NC_009484.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate enzyme, central region 2544543 5159762 Acry_2314 Acidiphilium cryptum JF-5 thiamine pyrophosphate enzyme, central region YP_001235427.1 2542705 R 349163 CDS YP_001235428.1 148261301 5159763 complement(2544540..2546450) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 2546450 5159763 Acry_2315 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001235428.1 2544540 R 349163 CDS YP_001235429.1 148261302 5159562 complement(2546519..2547322) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2547322 5159562 Acry_2316 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235429.1 2546519 R 349163 CDS YP_001235430.1 148261303 5159690 complement(2547324..2548391) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 2548391 5159690 Acry_2317 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235430.1 2547324 R 349163 CDS YP_001235431.1 148261304 5159691 complement(2548472..2549434) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 2549434 5159691 Acry_2318 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001235431.1 2548472 R 349163 CDS YP_001235432.1 148261305 5160577 complement(2549599..2550387) 1 NC_009484.1 PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2550387 5160577 Acry_2319 Acidiphilium cryptum JF-5 xylose isomerase domain-containing protein YP_001235432.1 2549599 R 349163 CDS YP_001235433.1 148261306 5159860 complement(2550396..2551406) 1 NC_009484.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; inositol 2-dehydrogenase 2551406 5159860 Acry_2320 Acidiphilium cryptum JF-5 inositol 2-dehydrogenase YP_001235433.1 2550396 R 349163 CDS YP_001235434.1 148261307 5159861 complement(2551408..2552370) 1 NC_009484.1 PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2552370 5159861 Acry_2321 Acidiphilium cryptum JF-5 xylose isomerase domain-containing protein YP_001235434.1 2551408 R 349163 CDS YP_001235435.1 148261308 5159702 2552446..2553519 1 NC_009484.1 PFAM: regulatory protein, LacI; regulatory protein, LacI 2553519 5159702 Acry_2322 Acidiphilium cryptum JF-5 regulatory protein, LacI YP_001235435.1 2552446 D 349163 CDS YP_001235436.1 148261309 5159486 2553835..2553984 1 NC_009484.1 hypothetical protein 2553984 5159486 Acry_2323 Acidiphilium cryptum JF-5 hypothetical protein YP_001235436.1 2553835 D 349163 CDS YP_001235437.1 148261310 5159487 complement(2554047..2554859) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2554859 5159487 Acry_2324 Acidiphilium cryptum JF-5 short chain dehydrogenase YP_001235437.1 2554047 R 349163 CDS YP_001235438.1 148261311 5159504 complement(2554856..2555767) 1 NC_009484.1 PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein 2555767 5159504 Acry_2325 Acidiphilium cryptum JF-5 xylose isomerase domain-containing protein YP_001235438.1 2554856 R 349163 CDS YP_001235439.1 148261312 5160600 complement(2555881..2556825) 1 NC_009484.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator 2556825 5160600 Acry_2326 Acidiphilium cryptum JF-5 RpiR family transcriptional regulator YP_001235439.1 2555881 R 349163 CDS YP_001235440.1 148261313 5160601 2557149..2557940 1 NC_009484.1 PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase 2557940 5160601 Acry_2327 Acidiphilium cryptum JF-5 HpcH/HpaI aldolase YP_001235440.1 2557149 D 349163 CDS YP_001235441.1 148261314 5159735 2557942..2558928 1 NC_009484.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2558928 5159735 Acry_2328 Acidiphilium cryptum JF-5 D-isomer specific 2-hydroxyacid dehydrogenase YP_001235441.1 2557942 D 349163 CDS YP_001235442.1 148261315 5160071 2558999..2559991 1 NC_009484.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; inositol 2-dehydrogenase 2559991 5160071 Acry_2329 Acidiphilium cryptum JF-5 inositol 2-dehydrogenase YP_001235442.1 2558999 D 349163 CDS YP_001235443.1 148261316 5160072 2559996..2561117 1 NC_009484.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein 2561117 5160072 Acry_2330 Acidiphilium cryptum JF-5 oxidoreductase domain-containing protein YP_001235443.1 2559996 D 349163 CDS YP_001235444.1 148261317 5159764 complement(2561181..2561345) 1 NC_009484.1 hypothetical protein 2561345 5159764 Acry_2331 Acidiphilium cryptum JF-5 hypothetical protein YP_001235444.1 2561181 R 349163 CDS YP_001235445.1 148261318 5160149 complement(2561466..2563892) 1 NC_009484.1 hypothetical protein 2563892 5160149 Acry_2332 Acidiphilium cryptum JF-5 hypothetical protein YP_001235445.1 2561466 R 349163 CDS YP_001235446.1 148261319 5160150 complement(2563912..2565471) 1 NC_009484.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 2565471 5160150 Acry_2333 Acidiphilium cryptum JF-5 NADH dehydrogenase (quinone) YP_001235446.1 2563912 R 349163 CDS YP_001235447.1 148261320 5160129 2565579..2566454 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2566454 5160129 Acry_2334 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235447.1 2565579 D 349163 CDS YP_001235448.1 148261321 5159670 2566986..2567243 1 NC_009484.1 hypothetical protein 2567243 5159670 Acry_2335 Acidiphilium cryptum JF-5 hypothetical protein YP_001235448.1 2566986 D 349163 CDS YP_001235449.1 148261322 5159671 2567305..2567925 1 NC_009484.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2567925 5159671 Acry_2336 Acidiphilium cryptum JF-5 RNA polymerase sigma factor YP_001235449.1 2567305 D 349163 CDS YP_001235450.1 148261323 5159479 2567922..2568350 1 NC_009484.1 hypothetical protein 2568350 5159479 Acry_2337 Acidiphilium cryptum JF-5 hypothetical protein YP_001235450.1 2567922 D 349163 CDS YP_001235451.1 148261324 5159749 2568347..2568886 1 NC_009484.1 integral membrane protein-like protein 2568886 5159749 Acry_2338 Acidiphilium cryptum JF-5 integral membrane protein-like protein YP_001235451.1 2568347 D 349163 CDS YP_001235452.1 148261325 5159750 2569303..2570871 1 NC_009484.1 hypothetical protein 2570871 5159750 Acry_2339 Acidiphilium cryptum JF-5 hypothetical protein YP_001235452.1 2569303 D 349163 CDS YP_001235453.1 148261326 5160335 2570877..2572094 1 NC_009484.1 PFAM: protein of unknown function DUF1501; hypothetical protein 2572094 5160335 Acry_2340 Acidiphilium cryptum JF-5 hypothetical protein YP_001235453.1 2570877 D 349163 CDS YP_001235454.1 148261327 5159619 2572154..2572798 1 NC_009484.1 PFAM: DNA photolyase domain protein; DNA photolyase domain-containing protein 2572798 5159619 Acry_2341 Acidiphilium cryptum JF-5 DNA photolyase domain-containing protein YP_001235454.1 2572154 D 349163 CDS YP_001235455.1 148261328 5159620 2572946..2574199 1 NC_009484.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2574199 5159620 Acry_2342 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001235455.1 2572946 D 349163 CDS YP_001235456.1 148261329 5160648 2574218..2575387 1 NC_009484.1 PFAM: DNA photolyase, FAD-binding; deoxyribodipyrimidine photo-lyase 2575387 5160648 Acry_2343 Acidiphilium cryptum JF-5 deoxyribodipyrimidine photo-lyase YP_001235456.1 2574218 D 349163 CDS YP_001235457.1 148261330 5159660 2575415..2575840 1 NC_009484.1 hypothetical protein 2575840 5159660 Acry_2344 Acidiphilium cryptum JF-5 hypothetical protein YP_001235457.1 2575415 D 349163 CDS YP_001235458.1 148261331 5159661 2575833..2577008 1 NC_009484.1 hypothetical protein 2577008 5159661 Acry_2345 Acidiphilium cryptum JF-5 hypothetical protein YP_001235458.1 2575833 D 349163 CDS YP_001235459.1 148261332 5160274 2577008..2578132 1 NC_009484.1 hypothetical protein 2578132 5160274 Acry_2346 Acidiphilium cryptum JF-5 hypothetical protein YP_001235459.1 2577008 D 349163 CDS YP_001235460.1 148261333 5160340 2578333..2578656 1 NC_009484.1 hypothetical protein 2578656 5160340 Acry_2347 Acidiphilium cryptum JF-5 hypothetical protein YP_001235460.1 2578333 D 349163 CDS YP_001235461.1 148261334 5160341 2578862..2579767 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 2579767 5160341 Acry_2348 Acidiphilium cryptum JF-5 phage integrase family protein YP_001235461.1 2578862 D 349163 CDS YP_001235462.1 148261335 5160087 2579772..2580965 1 NC_009484.1 PFAM: putative transposase; putative transposase 2580965 5160087 Acry_2349 Acidiphilium cryptum JF-5 putative transposase YP_001235462.1 2579772 D 349163 CDS YP_001235463.1 148261336 5160314 complement(2581573..2582007) 1 NC_009484.1 PFAM: globin; globin 2582007 5160314 Acry_2350 Acidiphilium cryptum JF-5 globin YP_001235463.1 2581573 R 349163 CDS YP_001235464.1 148261337 5160315 complement(2582028..2583062) 1 NC_009484.1 hypothetical protein 2583062 5160315 Acry_2351 Acidiphilium cryptum JF-5 hypothetical protein YP_001235464.1 2582028 R 349163 CDS YP_001235465.1 148261338 5160266 2583946..2585640 1 NC_009484.1 PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 2585640 5160266 Acry_2352 Acidiphilium cryptum JF-5 resolvase domain-containing protein YP_001235465.1 2583946 D 349163 CDS YP_001235466.1 148261339 5162163 complement(2591485..2592441) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 2592441 5162163 Acry_2353 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001235466.1 2591485 R 349163 CDS YP_001235467.1 148261340 5160393 complement(2592450..2593049) 1 NC_009484.1 TIGRFAM: phosphoheptose isomerase; phosphoheptose isomerase 2593049 5160393 Acry_2354 Acidiphilium cryptum JF-5 phosphoheptose isomerase YP_001235467.1 2592450 R 349163 CDS YP_001235468.1 148261341 5160474 complement(2593039..2593905) 1 NC_009484.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; 3-hydroxybutyrate dehydrogenase 2593905 5160474 Acry_2355 Acidiphilium cryptum JF-5 3-hydroxybutyrate dehydrogenase YP_001235468.1 2593039 R 349163 CDS YP_001235469.1 148261342 5159752 2594160..2594444 1 NC_009484.1 hypothetical protein 2594444 5159752 Acry_2356 Acidiphilium cryptum JF-5 hypothetical protein YP_001235469.1 2594160 D 349163 CDS YP_001235470.1 148261343 5159753 complement(2594673..2595263) 1 NC_009484.1 PFAM: SOUL heme-binding protein; SOUL heme-binding protein 2595263 5159753 Acry_2357 Acidiphilium cryptum JF-5 SOUL heme-binding protein YP_001235470.1 2594673 R 349163 CDS YP_001235471.1 148261344 5160658 2595950..2596657 1 NC_009484.1 PFAM: transposase, IS4 family protein; transposase, IS4 family protein 2596657 5160658 Acry_2358 Acidiphilium cryptum JF-5 transposase, IS4 family protein YP_001235471.1 2595950 D 349163 CDS YP_001235472.1 148261345 5160140 complement(2596666..2597304) 1 NC_009484.1 hypothetical protein 2597304 5160140 Acry_2359 Acidiphilium cryptum JF-5 hypothetical protein YP_001235472.1 2596666 R 349163 CDS YP_001235473.1 148261346 5160141 complement(2597423..2597893) 1 NC_009484.1 PFAM: ferric-uptake regulator; ferric uptake regulator family protein 2597893 5160141 Acry_2360 Acidiphilium cryptum JF-5 ferric uptake regulator family protein YP_001235473.1 2597423 R 349163 CDS YP_001235474.1 148261347 5159917 2598015..2599667 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2599667 5159917 Acry_2361 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001235474.1 2598015 D 349163 CDS YP_001235475.1 148261348 5160260 2599785..2600963 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2600963 5160260 Acry_2362 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235475.1 2599785 D 349163 CDS YP_001235476.1 148261349 5160261 complement(2600973..2601962) 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2601962 5160261 Acry_2363 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235476.1 2600973 R 349163 CDS YP_001235477.1 148261350 5160465 complement(2602044..2603831) 1 NC_009484.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2603831 aspS 5160465 aspS Acidiphilium cryptum JF-5 aspartyl-tRNA synthetase YP_001235477.1 2602044 R 349163 CDS YP_001235478.1 148261351 5160659 2603916..2605094 1 NC_009484.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; ribonuclease D 2605094 5160659 Acry_2365 Acidiphilium cryptum JF-5 ribonuclease D YP_001235478.1 2603916 D 349163 CDS YP_001235479.1 148261352 5160660 complement(2605095..2605868) 1 NC_009484.1 PFAM: ABC-3 protein; ABC-3 protein 2605868 5160660 Acry_2366 Acidiphilium cryptum JF-5 ABC-3 protein YP_001235479.1 2605095 R 349163 CDS YP_001235480.1 148261353 5160387 complement(2605870..2606709) 1 NC_009484.1 PFAM: ABC-3 protein; ABC-3 protein 2606709 5160387 Acry_2367 Acidiphilium cryptum JF-5 ABC-3 protein YP_001235480.1 2605870 R 349163 CDS YP_001235481.1 148261354 5160399 complement(2606719..2607534) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2607534 5160399 Acry_2368 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235481.1 2606719 R 349163 CDS YP_001235482.1 148261355 5160400 complement(2607531..2608451) 1 NC_009484.1 PFAM: periplasmic solute binding protein; periplasmic solute binding protein 2608451 5160400 Acry_2369 Acidiphilium cryptum JF-5 periplasmic solute binding protein YP_001235482.1 2607531 R 349163 CDS YP_001235483.1 148261356 5160510 2608579..2608809 1 NC_009484.1 PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2608809 5160510 Acry_2370 Acidiphilium cryptum JF-5 4-oxalocrotonate tautomerase YP_001235483.1 2608579 D 349163 CDS YP_001235484.1 148261357 5160470 2608806..2609342 1 NC_009484.1 hypothetical protein 2609342 5160470 Acry_2371 Acidiphilium cryptum JF-5 hypothetical protein YP_001235484.1 2608806 D 349163 CDS YP_001235485.1 148261358 5160471 complement(2609311..2610585) 1 NC_009484.1 PFAM: MOFRL domain protein; hydroxypyruvate reductase 2610585 5160471 Acry_2372 Acidiphilium cryptum JF-5 hydroxypyruvate reductase YP_001235485.1 2609311 R 349163 CDS YP_001235486.1 148261359 5159604 complement(2610693..2611526) 1 NC_009484.1 hypothetical protein 2611526 5159604 Acry_2373 Acidiphilium cryptum JF-5 hypothetical protein YP_001235486.1 2610693 R 349163 CDS YP_001235487.1 148261360 5160281 complement(2611598..2611954) 1 NC_009484.1 hypothetical protein 2611954 5160281 Acry_2374 Acidiphilium cryptum JF-5 hypothetical protein YP_001235487.1 2611598 R 349163 CDS YP_001235488.1 148261361 5160282 complement(2612030..2613019) 1 NC_009484.1 PFAM: tRNA synthetase, class II (D, K and N); lysine--tRNA ligase 2613019 5160282 Acry_2375 Acidiphilium cryptum JF-5 lysine--tRNA ligase YP_001235488.1 2612030 R 349163 CDS YP_001235489.1 148261362 5160378 2613043..2614020 1 NC_009484.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 2614020 5160378 Acry_2376 Acidiphilium cryptum JF-5 lysine 2,3-aminomutase YodO family protein YP_001235489.1 2613043 D 349163 CDS YP_001235490.1 148261363 5162295 2614033..2614482 1 NC_009484.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2614482 5162295 Acry_2377 Acidiphilium cryptum JF-5 3-dehydroquinate dehydratase YP_001235490.1 2614033 D 349163 CDS YP_001235491.1 148261364 5162296 2614479..2614961 1 NC_009484.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2614961 5162296 Acry_2378 Acidiphilium cryptum JF-5 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001235491.1 2614479 D 349163 CDS YP_001235492.1 148261365 5160416 2614969..2616315 1 NC_009484.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2616315 5160416 Acry_2379 Acidiphilium cryptum JF-5 acetyl-CoA carboxylase biotin carboxylase subunit YP_001235492.1 2614969 D 349163 CDS YP_001235493.1 148261366 5160578 complement(2616327..2617127) 1 NC_009484.1 hypothetical protein 2617127 5160578 Acry_2380 Acidiphilium cryptum JF-5 hypothetical protein YP_001235493.1 2616327 R 349163 CDS YP_001235494.1 148261367 5160579 2617229..2619601 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2619601 5160579 Acry_2381 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001235494.1 2617229 D 349163 CDS YP_001235495.1 148261368 5160695 2619699..2621990 1 NC_009484.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2621990 5160695 Acry_2382 Acidiphilium cryptum JF-5 oxidoreductase alpha (molybdopterin) subunit YP_001235495.1 2619699 D 349163 CDS YP_001235496.1 148261369 5160766 complement(2622107..2622832) 1 NC_009484.1 PFAM: major intrinsic protein; major intrinsic protein 2622832 5160766 Acry_2383 Acidiphilium cryptum JF-5 major intrinsic protein YP_001235496.1 2622107 R 349163 CDS YP_001235497.1 148261370 5160767 complement(2622868..2624367) 1 NC_009484.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; glycerol kinase 2624367 5160767 Acry_2384 Acidiphilium cryptum JF-5 glycerol kinase YP_001235497.1 2622868 R 349163 CDS YP_001235498.1 148261371 5160741 complement(2624498..2626039) 1 NC_009484.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 2626039 glpD 5160741 glpD Acidiphilium cryptum JF-5 glycerol-3-phosphate dehydrogenase YP_001235498.1 2624498 R 349163 CDS YP_001235499.1 148261372 5160539 complement(2626157..2626963) 1 NC_009484.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 2626963 5160539 Acry_2386 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001235499.1 2626157 R 349163 CDS YP_001235500.1 148261373 5160540 2627258..2628775 1 NC_009484.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2628775 5160540 Acry_2387 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001235500.1 2627258 D 349163 CDS YP_001235501.1 148261374 5160326 2628904..2629779 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2629779 5160326 Acry_2388 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001235501.1 2628904 D 349163 CDS YP_001235502.1 148261375 5159662 2629807..2631270 1 NC_009484.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2631270 5159662 Acry_2389 Acidiphilium cryptum JF-5 aldehyde dehydrogenase YP_001235502.1 2629807 D 349163 CDS YP_001235503.1 148261376 5159663 complement(2631294..2632754) 1 NC_009484.1 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase 2632754 5159663 Acry_2390 Acidiphilium cryptum JF-5 gamma-aminobutyraldehyde dehydrogenase YP_001235503.1 2631294 R 349163 CDS YP_001235504.1 148261377 5160566 complement(2632735..2634285) 1 NC_009484.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 2634285 5160566 Acry_2391 Acidiphilium cryptum JF-5 amino acid permease-associated protein YP_001235504.1 2632735 R 349163 CDS YP_001235505.1 148261378 5160700 complement(2634307..2635452) 1 NC_009484.1 PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 2635452 5160700 Acry_2392 Acidiphilium cryptum JF-5 helix-turn-helix domain-containing protein YP_001235505.1 2634307 R 349163 CDS YP_001235506.1 148261379 5160701 2635501..2636982 1 NC_009484.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase 2636982 5160701 Acry_2393 Acidiphilium cryptum JF-5 glutamine synthetase YP_001235506.1 2635501 D 349163 CDS YP_001235507.1 148261380 5160576 2636989..2638158 1 NC_009484.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2638158 5160576 Acry_2394 Acidiphilium cryptum JF-5 iron-containing alcohol dehydrogenase YP_001235507.1 2636989 D 349163 CDS YP_001235508.1 148261381 5160494 2638307..2639386 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2639386 5160494 Acry_2395 Acidiphilium cryptum JF-5 diguanylate cyclase YP_001235508.1 2638307 D 349163 CDS YP_001235509.1 148261382 5160495 2639419..2642838 1 NC_009484.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 2642838 dnaE 5160495 dnaE Acidiphilium cryptum JF-5 DNA polymerase III subunit alpha YP_001235509.1 2639419 D 349163 CDS YP_001235510.1 148261383 5160794 2642922..2644091 1 NC_009484.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2644091 5160794 Acry_2397 Acidiphilium cryptum JF-5 acetyl-CoA acetyltransferase YP_001235510.1 2642922 D 349163 CDS YP_001235511.1 148261384 5160863 complement(2644156..2644905) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2644905 5160863 Acry_2398 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235511.1 2644156 R 349163 CDS YP_001235512.1 148261385 5160864 complement(2645032..2646021) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 2646021 5160864 Acry_2399 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001235512.1 2645032 R 349163 CDS YP_001235513.1 148261386 5160899 complement(2646190..2646585) 1 NC_009484.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 2646585 5160899 Acry_2400 Acidiphilium cryptum JF-5 cupin YP_001235513.1 2646190 R 349163 CDS YP_001235514.1 148261387 5160891 complement(2646653..2647279) 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2647279 5160891 Acry_2401 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001235514.1 2646653 R 349163 CDS YP_001235515.1 148261388 5160892 2647433..2648911 1 NC_009484.1 PFAM: Amidase; amidase 2648911 5160892 Acry_2402 Acidiphilium cryptum JF-5 amidase YP_001235515.1 2647433 D 349163 CDS YP_001235516.1 148261389 5160523 complement(2648931..2649809) 1 NC_009484.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; parB-like partition protein 2649809 5160523 Acry_2403 Acidiphilium cryptum JF-5 parB-like partition protein YP_001235516.1 2648931 R 349163 CDS YP_001235517.1 148261390 5160687 complement(2649806..2650597) 1 NC_009484.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2650597 5160687 Acry_2404 Acidiphilium cryptum JF-5 cobyrinic acid a,c-diamide synthase YP_001235517.1 2649806 R 349163 CDS YP_001235518.1 148261391 5160688 complement(2650587..2651240) 1 NC_009484.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 2651240 5160688 Acry_2405 Acidiphilium cryptum JF-5 methyltransferase GidB YP_001235518.1 2650587 R 349163 CDS YP_001235519.1 148261392 5159927 complement(2651237..2652967) 1 NC_009484.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2652967 5159927 Acry_2406 Acidiphilium cryptum JF-5 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001235519.1 2651237 R 349163 CDS YP_001235520.1 148261393 5160560 complement(2653003..2654304) 1 NC_009484.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; tRNA modification GTPase TrmE 2654304 5160560 Acry_2407 Acidiphilium cryptum JF-5 tRNA modification GTPase TrmE YP_001235520.1 2653003 R 349163 CDS YP_001235521.1 148261394 5160561 complement(2654301..2654489) 1 NC_009484.1 ferredoxin-like protein 2654489 5160561 Acry_2408 Acidiphilium cryptum JF-5 ferredoxin-like protein YP_001235521.1 2654301 R 349163 CDS YP_001235522.1 148261395 5162323 2654574..2656805 1 NC_009484.1 PFAM: protein of unknown function DUF255; hypothetical protein 2656805 5162323 Acry_2409 Acidiphilium cryptum JF-5 hypothetical protein YP_001235522.1 2654574 D 349163 CDS YP_001235523.1 148261396 5162342 2656848..2657930 1 NC_009484.1 chromosome partitioning ATPase 2657930 5162342 Acry_2410 Acidiphilium cryptum JF-5 chromosome partitioning ATPase YP_001235523.1 2656848 D 349163 CDS YP_001235524.1 148261397 5162343 2657935..2658402 1 NC_009484.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 2658402 5162343 Acry_2411 Acidiphilium cryptum JF-5 DNA polymerase III subunit chi YP_001235524.1 2657935 D 349163 CDS YP_001235525.1 148261398 5160304 2658451..2660040 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 2660040 5160304 Acry_2412 Acidiphilium cryptum JF-5 hypothetical protein YP_001235525.1 2658451 D 349163 CDS YP_001235526.1 148261399 5160809 complement(2660048..2661220) 1 NC_009484.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 2661220 5160809 Acry_2413 Acidiphilium cryptum JF-5 hypothetical protein YP_001235526.1 2660048 R 349163 CDS YP_001235527.1 148261400 5160810 2661333..2662262 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2662262 5160810 Acry_2414 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235527.1 2661333 D 349163 CDS YP_001235528.1 148261401 5160831 2662311..2663399 1 NC_009484.1 PFAM: glycosyl transferase, family 4; glycosyl transferase family protein 2663399 5160831 Acry_2415 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235528.1 2662311 D 349163 CDS YP_001235529.1 148261402 5160865 complement(2663412..2663771) 1 NC_009484.1 hypothetical protein 2663771 5160865 Acry_2416 Acidiphilium cryptum JF-5 hypothetical protein YP_001235529.1 2663412 R 349163 CDS YP_001235530.1 148261403 5160866 complement(2663761..2664801) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2664801 5160866 Acry_2417 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001235530.1 2663761 R 349163 CDS YP_001235531.1 148261404 5160839 complement(2664838..2666331) 1 NC_009484.1 hypothetical protein 2666331 5160839 Acry_2418 Acidiphilium cryptum JF-5 hypothetical protein YP_001235531.1 2664838 R 349163 CDS YP_001235532.1 148261405 5160837 complement(2666526..2666846) 1 NC_009484.1 hypothetical protein 2666846 5160837 Acry_2419 Acidiphilium cryptum JF-5 hypothetical protein YP_001235532.1 2666526 R 349163 CDS YP_001235533.1 148261406 5160838 complement(2668119..2668934) 1 NC_009484.1 hypothetical protein 2668934 5160838 Acry_2420 Acidiphilium cryptum JF-5 hypothetical protein YP_001235533.1 2668119 R 349163 CDS YP_001235534.1 148261407 5160550 complement(2669235..2671769) 1 NC_009484.1 hypothetical protein 2671769 5160550 Acry_2421 Acidiphilium cryptum JF-5 hypothetical protein YP_001235534.1 2669235 R 349163 CDS YP_001235535.1 148261408 5160889 complement(2671762..2673357) 1 NC_009484.1 PFAM: Eco57I restriction endonuclease; site-specific DNA-methyltransferase (adenine-specific) 2673357 5160889 Acry_2422 Acidiphilium cryptum JF-5 site-specific DNA-methyltransferase (adenine-specific) YP_001235535.1 2671762 R 349163 CDS YP_001235536.1 148261409 5160890 complement(2673354..2674010) 1 NC_009484.1 hypothetical protein 2674010 5160890 Acry_2423 Acidiphilium cryptum JF-5 hypothetical protein YP_001235536.1 2673354 R 349163 CDS YP_001235537.1 148261410 5159827 complement(2674385..2677156) 1 NC_009484.1 exonuclease V subunit alpha 2677156 5159827 Acry_2424 Acidiphilium cryptum JF-5 exonuclease V subunit alpha YP_001235537.1 2674385 R 349163 CDS YP_001235538.1 148261411 5160835 complement(2677156..2679006) 1 NC_009484.1 Type IV secretory pathway VirD4 components-like protein 2679006 5160835 Acry_2425 Acidiphilium cryptum JF-5 Type IV secretory pathway VirD4 components-like protein YP_001235538.1 2677156 R 349163 CDS YP_001235539.1 148261412 5162106 complement(2680131..2681060) 1 NC_009484.1 hypothetical protein 2681060 5162106 Acry_2427 Acidiphilium cryptum JF-5 hypothetical protein YP_001235539.1 2680131 R 349163 CDS YP_001235540.1 148261413 5160937 complement(2681060..2682256) 1 NC_009484.1 PFAM: phage integrase family protein; phage integrase family protein 2682256 5160937 Acry_2428 Acidiphilium cryptum JF-5 phage integrase family protein YP_001235540.1 2681060 R 349163 CDS YP_001235541.1 148261414 5162107 complement(2682514..2683788) 1 NC_009484.1 PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein 2683788 5162107 Acry_2429 Acidiphilium cryptum JF-5 type III effector Hrp-dependent outer protein YP_001235541.1 2682514 R 349163 CDS YP_001235542.1 148261415 5160870 complement(2683785..2684558) 1 NC_009484.1 PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 2684558 5160870 Acry_2430 Acidiphilium cryptum JF-5 hydroxypyruvate isomerase YP_001235542.1 2683785 R 349163 CDS YP_001235543.1 148261416 5160922 complement(2684586..2685497) 1 NC_009484.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2685497 5160922 Acry_2431 Acidiphilium cryptum JF-5 3-hydroxyisobutyrate dehydrogenase YP_001235543.1 2684586 R 349163 CDS YP_001235544.1 148261417 5160459 complement(2685543..2686640) 1 NC_009484.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase 2686640 5160459 Acry_2432 Acidiphilium cryptum JF-5 alanine racemase YP_001235544.1 2685543 R 349163 CDS YP_001235545.1 148261418 5160460 2686758..2687666 1 NC_009484.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 2687666 5160460 Acry_2433 Acidiphilium cryptum JF-5 NAD-binding 6-phosphogluconate dehydrogenase YP_001235545.1 2686758 D 349163 CDS YP_001235546.1 148261419 5160849 2687663..2688298 1 NC_009484.1 PFAM: class II aldolase/adducin family protein; putative aldolase 2688298 5160849 Acry_2434 Acidiphilium cryptum JF-5 putative aldolase YP_001235546.1 2687663 D 349163 CDS YP_001235547.1 148261420 5160988 complement(2688314..2688892) 1 NC_009484.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2688892 5160988 Acry_2435 Acidiphilium cryptum JF-5 antibiotic biosynthesis monooxygenase YP_001235547.1 2688314 R 349163 CDS YP_001235548.1 148261421 5160989 complement(2688897..2689487) 1 NC_009484.1 hypothetical protein 2689487 5160989 Acry_2436 Acidiphilium cryptum JF-5 hypothetical protein YP_001235548.1 2688897 R 349163 CDS YP_001235549.1 148261422 5160997 2689677..2691161 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2691161 5160997 Acry_2437 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235549.1 2689677 D 349163 CDS YP_001235550.1 148261423 5161050 2691437..2694856 1 NC_009484.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 2694856 5161050 Acry_2438 Acidiphilium cryptum JF-5 indolepyruvate ferredoxin oxidoreductase YP_001235550.1 2691437 D 349163 CDS YP_001235551.1 148261424 5161051 complement(2694857..2695921) 1 NC_009484.1 PFAM: putative ammonia monooxygenase; putative ammonia monooxygenase 2695921 5161051 Acry_2439 Acidiphilium cryptum JF-5 putative ammonia monooxygenase YP_001235551.1 2694857 R 349163 CDS YP_001235552.1 148261425 5161054 complement(2696066..2696968) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2696968 5161054 Acry_2440 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235552.1 2696066 R 349163 CDS YP_001235553.1 148261426 5161018 complement(2697018..2698055) 1 NC_009484.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; thioredoxin reductase 2698055 5161018 Acry_2441 Acidiphilium cryptum JF-5 thioredoxin reductase YP_001235553.1 2697018 R 349163 CDS YP_001235554.1 148261427 5161019 2698132..2698638 1 NC_009484.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2698638 5161019 Acry_2442 Acidiphilium cryptum JF-5 AsnC family transcriptional regulator YP_001235554.1 2698132 D 349163 CDS YP_001235555.1 148261428 5161057 2698747..2699610 1 NC_009484.1 hypothetical protein 2699610 5161057 Acry_2443 Acidiphilium cryptum JF-5 hypothetical protein YP_001235555.1 2698747 D 349163 CDS YP_001235556.1 148261429 5160973 2699706..2702063 1 NC_009484.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 2702063 5160973 Acry_2444 Acidiphilium cryptum JF-5 surface antigen (D15) YP_001235556.1 2699706 D 349163 CDS YP_001235557.1 148261430 5160974 2702068..2702847 1 NC_009484.1 PFAM: outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2702847 5160974 Acry_2445 Acidiphilium cryptum JF-5 outer membrane chaperone Skp YP_001235557.1 2702068 D 349163 CDS YP_001235558.1 148261431 5161120 2702853..2703938 1 NC_009484.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2703938 lpxD 5161120 lpxD Acidiphilium cryptum JF-5 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001235558.1 2702853 D 349163 CDS YP_001235559.1 148261432 5161099 2703980..2704477 1 NC_009484.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2704477 5161099 Acry_2447 Acidiphilium cryptum JF-5 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001235559.1 2703980 D 349163 CDS YP_001235560.1 148261433 5161100 2704474..2705280 1 NC_009484.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2705280 5161100 Acry_2448 Acidiphilium cryptum JF-5 UDP-N-acetylglucosamine acyltransferase YP_001235560.1 2704474 D 349163 CDS YP_001235561.1 148261434 5161169 2705305..2706168 1 NC_009484.1 PFAM: protein of unknown function DUF1009; hypothetical protein 2706168 5161169 Acry_2449 Acidiphilium cryptum JF-5 hypothetical protein YP_001235561.1 2705305 D 349163 CDS YP_001235562.1 148261435 5161209 2706165..2706557 1 NC_009484.1 TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2706557 5161209 Acry_2450 Acidiphilium cryptum JF-5 lactoylglutathione lyase YP_001235562.1 2706165 D 349163 CDS YP_001235563.1 148261436 5161210 2706565..2707839 1 NC_009484.1 hypothetical protein 2707839 5161210 Acry_2451 Acidiphilium cryptum JF-5 hypothetical protein YP_001235563.1 2706565 D 349163 CDS YP_001235564.1 148261437 5161233 complement(2707870..2708439) 1 NC_009484.1 hypothetical protein 2708439 5161233 Acry_2452 Acidiphilium cryptum JF-5 hypothetical protein YP_001235564.1 2707870 R 349163 CDS YP_001235565.1 148261438 5160532 complement(2708493..2708984) 1 NC_009484.1 hypothetical protein 2708984 5160532 Acry_2453 Acidiphilium cryptum JF-5 hypothetical protein YP_001235565.1 2708493 R 349163 CDS YP_001235566.1 148261439 5160533 complement(2709668..2710126) 1 NC_009484.1 hypothetical protein 2710126 5160533 Acry_2454 Acidiphilium cryptum JF-5 hypothetical protein YP_001235566.1 2709668 R 349163 CDS YP_001235567.1 148261440 5161236 complement(2710274..2710582) 1 NC_009484.1 hypothetical protein 2710582 5161236 Acry_2455 Acidiphilium cryptum JF-5 hypothetical protein YP_001235567.1 2710274 R 349163 CDS YP_001235568.1 148261441 5161095 complement(2710629..2711882) 1 NC_009484.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2711882 5161095 Acry_2456 Acidiphilium cryptum JF-5 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001235568.1 2710629 R 349163 CDS YP_001235569.1 148261442 5162002 complement(2712410..2713138) 1 NC_009484.1 hypothetical protein 2713138 5162002 Acry_2458 Acidiphilium cryptum JF-5 hypothetical protein YP_001235569.1 2712410 R 349163 CDS YP_001235570.1 148261443 5162336 complement(2713440..2713964) 1 NC_009484.1 ribosomal protein N-acetylase-like protein 2713964 5162336 Acry_2459 Acidiphilium cryptum JF-5 ribosomal protein N-acetylase-like protein YP_001235570.1 2713440 R 349163 CDS YP_001235571.1 148261444 5160630 complement(2714205..2715884) 1 NC_009484.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 2715884 5160630 Acry_2460 Acidiphilium cryptum JF-5 putative ABC transporter ATP-binding protein YP_001235571.1 2714205 R 349163 CDS YP_001235572.1 148261445 5160631 complement(2716074..2716685) 1 NC_009484.1 hypothetical protein 2716685 5160631 Acry_2461 Acidiphilium cryptum JF-5 hypothetical protein YP_001235572.1 2716074 R 349163 CDS YP_001235573.1 148261446 5162356 complement(2716841..2717812) 1 NC_009484.1 TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 2717812 5162356 Acry_2462 Acidiphilium cryptum JF-5 2-dehydropantoate 2-reductase YP_001235573.1 2716841 R 349163 CDS YP_001235574.1 148261447 5161198 complement(2717809..2719329) 1 NC_009484.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2719329 5161198 Acry_2463 Acidiphilium cryptum JF-5 AMP-dependent synthetase and ligase YP_001235574.1 2717809 R 349163 CDS YP_001235575.1 148261448 5161199 complement(2719436..2720560) 1 NC_009484.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2720560 5161199 Acry_2464 Acidiphilium cryptum JF-5 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001235575.1 2719436 R 349163 CDS YP_001235576.1 148261449 5161125 complement(2720577..2720783) 1 NC_009484.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2720783 5161125 Acry_2465 Acidiphilium cryptum JF-5 heavy metal transport/detoxification protein YP_001235576.1 2720577 R 349163 CDS YP_001235577.1 148261450 5161207 2720940..2723177 1 NC_009484.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 2723177 5161207 Acry_2466 Acidiphilium cryptum JF-5 heavy metal translocating P-type ATPase YP_001235577.1 2720940 D 349163 CDS YP_001235578.1 148261451 5161208 complement(2723185..2723928) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2723928 5161208 Acry_2467 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235578.1 2723185 R 349163 CDS YP_001235579.1 148261452 5161248 complement(2723941..2724867) 1 NC_009484.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 2724867 5161248 Acry_2468 Acidiphilium cryptum JF-5 dihydrodipicolinate synthetase YP_001235579.1 2723941 R 349163 CDS YP_001235580.1 148261453 5161178 complement(2724864..2725862) 1 NC_009484.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2725862 5161178 Acry_2469 Acidiphilium cryptum JF-5 D-isomer specific 2-hydroxyacid dehydrogenase YP_001235580.1 2724864 R 349163 CDS YP_001235581.1 148261454 5161179 complement(2725859..2727562) 1 NC_009484.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2727562 5161179 Acry_2470 Acidiphilium cryptum JF-5 dihydroxy-acid dehydratase YP_001235581.1 2725859 R 349163 CDS YP_001235582.1 148261455 5161307 complement(2727565..2728287) 1 NC_009484.1 PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein 2728287 5161307 Acry_2471 Acidiphilium cryptum JF-5 hypothetical protein YP_001235582.1 2727565 R 349163 CDS YP_001235583.1 148261456 5161296 complement(2728689..2729138) 1 NC_009484.1 PFAM: conserved hypothetical protein 701; hypothetical protein 2729138 5161296 Acry_2472 Acidiphilium cryptum JF-5 hypothetical protein YP_001235583.1 2728689 R 349163 CDS YP_001235584.1 148261457 5161297 complement(2729135..2729827) 1 NC_009484.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2729827 5161297 Acry_2473 Acidiphilium cryptum JF-5 HAD family hydrolase YP_001235584.1 2729135 R 349163 CDS YP_001235585.1 148261458 5161272 complement(2729824..2730912) 1 NC_009484.1 PFAM: ferrochelatase; ferrochelatase 2730912 5161272 Acry_2474 Acidiphilium cryptum JF-5 ferrochelatase YP_001235585.1 2729824 R 349163 CDS YP_001235586.1 148261459 5161335 complement(2730918..2731994) 1 NC_009484.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 2731994 hemE 5161335 hemE Acidiphilium cryptum JF-5 uroporphyrinogen decarboxylase YP_001235586.1 2730918 R 349163 CDS YP_001235587.1 148261460 5161336 2732263..2733141 1 NC_009484.1 PFAM: protein of unknown function DUF299; hypothetical protein 2733141 5161336 Acry_2476 Acidiphilium cryptum JF-5 hypothetical protein YP_001235587.1 2732263 D 349163 CDS YP_001235588.1 148261461 5160580 2733248..2733739 1 NC_009484.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2733739 5160580 Acry_2477 Acidiphilium cryptum JF-5 methylated-DNA--protein-cysteine methyltransferase YP_001235588.1 2733248 D 349163 CDS YP_001235589.1 148261462 5160098 2733759..2734736 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2734736 5160098 Acry_2478 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235589.1 2733759 D 349163 CDS YP_001235590.1 148261463 5160099 2734897..2735184 1 NC_009484.1 hypothetical protein 2735184 5160099 Acry_2479 Acidiphilium cryptum JF-5 hypothetical protein YP_001235590.1 2734897 D 349163 CDS YP_001235591.1 148261464 5161251 2735328..2735774 1 NC_009484.1 PFAM: CHRD domain containing protein; CHRD domain-containing protein 2735774 5161251 Acry_2480 Acidiphilium cryptum JF-5 CHRD domain-containing protein YP_001235591.1 2735328 D 349163 CDS YP_001235592.1 148261465 5161424 2735845..2736276 1 NC_009484.1 TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 2736276 5161424 Acry_2481 Acidiphilium cryptum JF-5 dihydroneopterin aldolase YP_001235592.1 2735845 D 349163 CDS YP_001235593.1 148261466 5161425 complement(2736283..2737539) 1 NC_009484.1 PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 2737539 5161425 Acry_2482 Acidiphilium cryptum JF-5 natural resistance-associated macrophage protein YP_001235593.1 2736283 R 349163 CDS YP_001235594.1 148261467 5161230 complement(2737536..2738888) 1 NC_009484.1 TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; 3-carboxy-cis,cis-muconate cycloisomerase 2738888 5161230 Acry_2483 Acidiphilium cryptum JF-5 3-carboxy-cis,cis-muconate cycloisomerase YP_001235594.1 2737536 R 349163 CDS YP_001235595.1 148261468 5161429 2738971..2740365 1 NC_009484.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2740365 5161429 Acry_2484 Acidiphilium cryptum JF-5 cytosine/purines uracil thiamine allantoin permease YP_001235595.1 2738971 D 349163 CDS YP_001235596.1 148261469 5161430 complement(2741189..2741602) 1 NC_009484.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 2741602 5161430 Acry_2485 Acidiphilium cryptum JF-5 Sel1 domain-containing protein YP_001235596.1 2741189 R 349163 CDS YP_001235597.1 148261470 5161368 complement(2741957..2742385) 1 NC_009484.1 hypothetical protein 2742385 5161368 Acry_2486 Acidiphilium cryptum JF-5 hypothetical protein YP_001235597.1 2741957 R 349163 CDS YP_001235598.1 148261471 5161469 complement(2742894..2743331) 1 NC_009484.1 hypothetical protein 2743331 5161469 Acry_2487 Acidiphilium cryptum JF-5 hypothetical protein YP_001235598.1 2742894 R 349163 CDS YP_001235599.1 148261472 5162003 2743713..2744237 1 NC_009484.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 2744237 5162003 Acry_2488 Acidiphilium cryptum JF-5 inorganic pyrophosphatase YP_001235599.1 2743713 D 349163 CDS YP_001235600.1 148261473 5161431 complement(2744287..2745147) 1 NC_009484.1 PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2745147 5161431 Acry_2489 Acidiphilium cryptum JF-5 NAD-dependent epimerase/dehydratase YP_001235600.1 2744287 R 349163 CDS YP_001235601.1 148261474 5161461 complement(2745144..2745800) 1 NC_009484.1 hypothetical protein 2745800 5161461 Acry_2490 Acidiphilium cryptum JF-5 hypothetical protein YP_001235601.1 2745144 R 349163 CDS YP_001235602.1 148261475 5161462 complement(2745844..2746026) 1 NC_009484.1 hypothetical protein 2746026 5161462 Acry_2491 Acidiphilium cryptum JF-5 hypothetical protein YP_001235602.1 2745844 R 349163 CDS YP_001235603.1 148261476 5161352 2746073..2746393 1 NC_009484.1 PFAM: protein of unknown function DUF710; hypothetical protein 2746393 5161352 Acry_2492 Acidiphilium cryptum JF-5 hypothetical protein YP_001235603.1 2746073 D 349163 CDS YP_001235604.1 148261477 5161455 2746586..2747143 1 NC_009484.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2747143 5161455 Acry_2493 Acidiphilium cryptum JF-5 5-formyltetrahydrofolate cyclo-ligase YP_001235604.1 2746586 D 349163 CDS YP_001235605.1 148261478 5161456 2747165..2748310 1 NC_009484.1 PFAM: aminotransferase, class I and II; class I and II aminotransferase 2748310 5161456 Acry_2494 Acidiphilium cryptum JF-5 class I and II aminotransferase YP_001235605.1 2747165 D 349163 CDS YP_001235606.1 148261479 5161919 complement(2749064..2750002) 1 NC_009484.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 2750002 5161919 Acry_2496 Acidiphilium cryptum JF-5 signal recognition particle-docking protein FtsY YP_001235606.1 2749064 R 349163 CDS YP_001235607.1 148261480 5161567 complement(2749999..2751234) 1 NC_009484.1 TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 2751234 5161567 Acry_2497 Acidiphilium cryptum JF-5 MiaB-like tRNA modifying protein YP_001235607.1 2749999 R 349163 CDS YP_001235608.1 148261481 5161568 complement(2751231..2752064) 1 NC_009484.1 PFAM: diaminopimelate epimerase; diaminopimelate epimerase 2752064 5161568 Acry_2498 Acidiphilium cryptum JF-5 diaminopimelate epimerase YP_001235608.1 2751231 R 349163 CDS YP_001235609.1 148261482 5161402 complement(2752107..2753576) 1 NC_009484.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 2753576 5161402 Acry_2499 Acidiphilium cryptum JF-5 amino acid permease-associated protein YP_001235609.1 2752107 R 349163 CDS YP_001235610.1 148261483 5161445 complement(2753573..2754295) 1 NC_009484.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 2754295 5161445 Acry_2500 Acidiphilium cryptum JF-5 endonuclease III YP_001235610.1 2753573 R 349163 CDS YP_001235611.1 148261484 5161446 2754348..2754893 1 NC_009484.1 integral membrane protein-like protein 2754893 5161446 Acry_2501 Acidiphilium cryptum JF-5 integral membrane protein-like protein YP_001235611.1 2754348 D 349163 CDS YP_001235612.1 148261485 5161677 2754966..2756114 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 2756114 5161677 Acry_2502 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235612.1 2754966 D 349163 CDS YP_001235613.1 148261486 5161495 complement(2756210..2757859) 1 NC_009484.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2757859 groEL 5161495 groEL Acidiphilium cryptum JF-5 chaperonin GroEL YP_001235613.1 2756210 R 349163 CDS YP_001235614.1 148261487 5161496 complement(2757904..2758218) 1 NC_009484.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2758218 groES 5161496 groES Acidiphilium cryptum JF-5 co-chaperonin GroES YP_001235614.1 2757904 R 349163 CDS YP_001235615.1 148261488 5161582 2758436..2758762 1 NC_009484.1 PFAM: Usg family protein; Usg family protein 2758762 5161582 Acry_2505 Acidiphilium cryptum JF-5 Usg family protein YP_001235615.1 2758436 D 349163 CDS YP_001235616.1 148261489 5161558 2758882..2759712 1 NC_009484.1 hypothetical protein 2759712 5161558 Acry_2506 Acidiphilium cryptum JF-5 hypothetical protein YP_001235616.1 2758882 D 349163 CDS YP_001235617.1 148261490 5161559 2759837..2761222 1 NC_009484.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; phage protein 2761222 5161559 Acry_2507 Acidiphilium cryptum JF-5 phage protein YP_001235617.1 2759837 D 349163 CDS YP_001235618.1 148261491 5161599 2761227..2762639 1 NC_009484.1 hypothetical protein 2762639 5161599 Acry_2508 Acidiphilium cryptum JF-5 hypothetical protein YP_001235618.1 2761227 D 349163 CDS YP_001235619.1 148261492 5161601 2762636..2763061 1 NC_009484.1 hypothetical protein 2763061 5161601 Acry_2509 Acidiphilium cryptum JF-5 hypothetical protein YP_001235619.1 2762636 D 349163 CDS YP_001235620.1 148261493 5161602 2763161..2764483 1 NC_009484.1 hypothetical protein 2764483 5161602 Acry_2510 Acidiphilium cryptum JF-5 hypothetical protein YP_001235620.1 2763161 D 349163 CDS YP_001235621.1 148261494 5162224 2764497..2764805 1 NC_009484.1 hypothetical protein 2764805 5162224 Acry_2511 Acidiphilium cryptum JF-5 hypothetical protein YP_001235621.1 2764497 D 349163 CDS YP_001235622.1 148261495 5162311 2764807..2765214 1 NC_009484.1 hypothetical protein 2765214 5162311 Acry_2512 Acidiphilium cryptum JF-5 hypothetical protein YP_001235622.1 2764807 D 349163 CDS YP_001235623.1 148261496 5162312 2765222..2765866 1 NC_009484.1 hypothetical protein 2765866 5162312 Acry_2513 Acidiphilium cryptum JF-5 hypothetical protein YP_001235623.1 2765222 D 349163 CDS YP_001235624.1 148261497 5161652 2765866..2766711 1 NC_009484.1 hypothetical protein 2766711 5161652 Acry_2514 Acidiphilium cryptum JF-5 hypothetical protein YP_001235624.1 2765866 D 349163 CDS YP_001235625.1 148261498 5161597 2766863..2768419 1 NC_009484.1 hypothetical protein 2768419 5161597 Acry_2515 Acidiphilium cryptum JF-5 hypothetical protein YP_001235625.1 2766863 D 349163 CDS YP_001235626.1 148261499 5161598 2768428..2768856 1 NC_009484.1 hypothetical protein 2768856 5161598 Acry_2516 Acidiphilium cryptum JF-5 hypothetical protein YP_001235626.1 2768428 D 349163 CDS YP_001235627.1 148261500 5161589 2768853..2769158 1 NC_009484.1 hypothetical protein 2769158 5161589 Acry_2517 Acidiphilium cryptum JF-5 hypothetical protein YP_001235627.1 2768853 D 349163 CDS YP_001235628.1 148261501 5161638 2769445..2770095 1 NC_009484.1 hypothetical protein 2770095 5161638 Acry_2518 Acidiphilium cryptum JF-5 hypothetical protein YP_001235628.1 2769445 D 349163 CDS YP_001235629.1 148261502 5161639 2770112..2770798 1 NC_009484.1 hypothetical protein 2770798 5161639 Acry_2519 Acidiphilium cryptum JF-5 hypothetical protein YP_001235629.1 2770112 D 349163 CDS YP_001235630.1 148261503 5159906 2770795..2770989 1 NC_009484.1 hypothetical protein 2770989 5159906 Acry_2520 Acidiphilium cryptum JF-5 hypothetical protein YP_001235630.1 2770795 D 349163 CDS YP_001235631.1 148261504 5160082 2770961..2771962 1 NC_009484.1 hypothetical protein 2771962 5160082 Acry_2521 Acidiphilium cryptum JF-5 hypothetical protein YP_001235631.1 2770961 D 349163 CDS YP_001235632.1 148261505 5160083 2771959..2772507 1 NC_009484.1 TIGRFAM: phage baseplate assembly protein V; phage baseplate assembly protein V 2772507 5160083 Acry_2522 Acidiphilium cryptum JF-5 phage baseplate assembly protein V YP_001235632.1 2771959 D 349163 CDS YP_001235633.1 148261506 5161637 2772507..2772875 1 NC_009484.1 hypothetical protein 2772875 5161637 Acry_2523 Acidiphilium cryptum JF-5 hypothetical protein YP_001235633.1 2772507 D 349163 CDS YP_001235634.1 148261507 5161767 2772894..2774018 1 NC_009484.1 PFAM: Baseplate J family protein; baseplate J family protein 2774018 5161767 Acry_2524 Acidiphilium cryptum JF-5 baseplate J family protein YP_001235634.1 2772894 D 349163 CDS YP_001235635.1 148261508 5161768 2774022..2774696 1 NC_009484.1 hypothetical protein 2774696 5161768 Acry_2525 Acidiphilium cryptum JF-5 hypothetical protein YP_001235635.1 2774022 D 349163 CDS YP_001235636.1 148261509 5161731 2774789..2776042 1 NC_009484.1 hypothetical protein 2776042 5161731 Acry_2526 Acidiphilium cryptum JF-5 hypothetical protein YP_001235636.1 2774789 D 349163 CDS YP_001235637.1 148261510 5161719 2776558..2779101 1 NC_009484.1 SMART: Parallel beta-helix repeat; parallel beta-helix repeat-containing protein 2779101 5161719 Acry_2527 Acidiphilium cryptum JF-5 parallel beta-helix repeat-containing protein YP_001235637.1 2776558 D 349163 CDS YP_001235638.1 148261511 5161720 2779129..2781021 1 NC_009484.1 hypothetical protein 2781021 5161720 Acry_2528 Acidiphilium cryptum JF-5 hypothetical protein YP_001235638.1 2779129 D 349163 CDS YP_001235639.1 148261512 5161681 2781024..2783162 1 NC_009484.1 hypothetical protein 2783162 5161681 Acry_2529 Acidiphilium cryptum JF-5 hypothetical protein YP_001235639.1 2781024 D 349163 CDS YP_001235640.1 148261513 5161744 2783168..2783521 1 NC_009484.1 hypothetical protein 2783521 5161744 Acry_2530 Acidiphilium cryptum JF-5 hypothetical protein YP_001235640.1 2783168 D 349163 CDS YP_001235641.1 148261514 5161745 2783538..2783777 1 NC_009484.1 hypothetical protein 2783777 5161745 Acry_2531 Acidiphilium cryptum JF-5 hypothetical protein YP_001235641.1 2783538 D 349163 CDS YP_001235642.1 148261515 5160331 2783765..2784160 1 NC_009484.1 hypothetical protein 2784160 5160331 Acry_2532 Acidiphilium cryptum JF-5 hypothetical protein YP_001235642.1 2783765 D 349163 CDS YP_001235643.1 148261516 5162386 2784157..2784462 1 NC_009484.1 hypothetical protein 2784462 5162386 Acry_2533 Acidiphilium cryptum JF-5 hypothetical protein YP_001235643.1 2784157 D 349163 CDS YP_001235644.1 148261517 5162387 complement(2784432..2786615) 1 NC_009484.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2786615 5162387 Acry_2534 Acidiphilium cryptum JF-5 polyphosphate kinase YP_001235644.1 2784432 R 349163 CDS YP_001235645.1 148261518 5160155 complement(2786646..2787389) 1 NC_009484.1 DNA replication initiation ATPase-like protein 2787389 5160155 Acry_2535 Acidiphilium cryptum JF-5 DNA replication initiation ATPase-like protein YP_001235645.1 2786646 R 349163 CDS YP_001235646.1 148261519 5162319 complement(2787382..2788476) 1 NC_009484.1 PFAM: protein of unknown function UPF0118; hypothetical protein 2788476 5162319 Acry_2536 Acidiphilium cryptum JF-5 hypothetical protein YP_001235646.1 2787382 R 349163 CDS YP_001235647.1 148261520 5162320 2788631..2789701 1 NC_009484.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 2789701 5162320 Acry_2537 Acidiphilium cryptum JF-5 phosphoribosylformylglycinamidine cyclo-ligase YP_001235647.1 2788631 D 349163 CDS YP_001235648.1 148261521 5161706 2789698..2790318 1 NC_009484.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2790318 purN 5161706 purN Acidiphilium cryptum JF-5 phosphoribosylglycinamide formyltransferase YP_001235648.1 2789698 D 349163 CDS YP_001235649.1 148261522 5161739 2790691..2791593 1 NC_009484.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2791593 5161739 Acry_2539 Acidiphilium cryptum JF-5 hypothetical protein YP_001235649.1 2790691 D 349163 CDS YP_001235650.1 148261523 5161740 complement(2791600..2792541) 1 NC_009484.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2792541 5161740 Acry_2540 Acidiphilium cryptum JF-5 ornithine carbamoyltransferase YP_001235650.1 2791600 R 349163 CDS YP_001235651.1 148261524 5161724 complement(2792538..2793734) 1 NC_009484.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein 2793734 argD 5161724 argD Acidiphilium cryptum JF-5 acetylornithine transaminase protein YP_001235651.1 2792538 R 349163 CDS YP_001235652.1 148261525 5161797 2793820..2795421 1 NC_009484.1 PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 2795421 5161797 Acry_2542 Acidiphilium cryptum JF-5 Ppx/GppA phosphatase YP_001235652.1 2793820 D 349163 CDS YP_001235653.1 148261526 5161798 complement(2795422..2795802) 1 NC_009484.1 hypothetical protein 2795802 5161798 Acry_2543 Acidiphilium cryptum JF-5 hypothetical protein YP_001235653.1 2795422 R 349163 CDS YP_001235654.1 148261527 5161718 2796174..2797169 1 NC_009484.1 hypothetical protein 2797169 5161718 Acry_2544 Acidiphilium cryptum JF-5 hypothetical protein YP_001235654.1 2796174 D 349163 CDS YP_001235655.1 148261528 5162388 2797244..2797600 1 NC_009484.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2797600 clpS 5162388 clpS Acidiphilium cryptum JF-5 ATP-dependent Clp protease adaptor protein ClpS YP_001235655.1 2797244 D 349163 CDS YP_001235656.1 148261529 5162389 2797818..2800145 1 NC_009484.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2800145 5162389 Acry_2546 Acidiphilium cryptum JF-5 ATP-dependent Clp protease ATP-binding protein ClpA YP_001235656.1 2797818 D 349163 CDS YP_001235657.1 148261530 5162313 complement(2800209..2801987) 1 NC_009484.1 hypothetical protein 2801987 5162313 Acry_2547 Acidiphilium cryptum JF-5 hypothetical protein YP_001235657.1 2800209 R 349163 CDS YP_001235658.1 148261531 5161814 complement(2802037..2803347) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 2803347 5161814 Acry_2548 Acidiphilium cryptum JF-5 hypothetical protein YP_001235658.1 2802037 R 349163 CDS YP_001235659.1 148261532 5161815 complement(2803388..2804566) 1 NC_009484.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2804566 5161815 Acry_2549 Acidiphilium cryptum JF-5 FAD linked oxidase domain-containing protein YP_001235659.1 2803388 R 349163 CDS YP_001235660.1 148261533 5161932 complement(2804563..2806023) 1 NC_009484.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 2806023 5161932 Acry_2550 Acidiphilium cryptum JF-5 FAD linked oxidase domain-containing protein YP_001235660.1 2804563 R 349163 CDS YP_001235661.1 148261534 5162437 complement(2806191..2806316) 1 NC_009484.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 2806316 rpmJ 5162437 rpmJ Acidiphilium cryptum JF-5 50S ribosomal protein L36 YP_001235661.1 2806191 R 349163 CDS YP_001235662.1 148261535 5162438 2806899..2807804 1 NC_009484.1 PFAM: aminotransferase, class IV; class IV aminotransferase 2807804 5162438 Acry_2552 Acidiphilium cryptum JF-5 class IV aminotransferase YP_001235662.1 2806899 D 349163 CDS YP_001235663.1 148261536 5161751 2807814..2808554 1 NC_009484.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2808554 pyrH 5161751 pyrH Acidiphilium cryptum JF-5 uridylate kinase YP_001235663.1 2807814 D 349163 CDS YP_001235664.1 148261537 5161878 2808564..2809130 1 NC_009484.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2809130 frr 5161878 frr Acidiphilium cryptum JF-5 ribosome recycling factor YP_001235664.1 2808564 D 349163 CDS YP_001235665.1 148261538 5161879 2809139..2809903 1 NC_009484.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 2809903 5161879 Acry_2555 Acidiphilium cryptum JF-5 undecaprenyl diphosphate synthase YP_001235665.1 2809139 D 349163 CDS YP_001235666.1 148261539 5161836 2809906..2810595 1 NC_009484.1 PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2810595 5161836 Acry_2556 Acidiphilium cryptum JF-5 phosphatidate cytidylyltransferase YP_001235666.1 2809906 D 349163 CDS YP_001235667.1 148261540 5161861 2810586..2811761 1 NC_009484.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2811761 5161861 Acry_2557 Acidiphilium cryptum JF-5 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001235667.1 2810586 D 349163 CDS YP_001235668.1 148261541 5161862 2811832..2812893 1 NC_009484.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; putative membrane-associated zinc metalloprotease 2812893 5161862 Acry_2558 Acidiphilium cryptum JF-5 putative membrane-associated zinc metalloprotease YP_001235668.1 2811832 D 349163 CDS YP_001235669.1 148261542 5160054 2813067..2814086 1 NC_009484.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2814086 5160054 Acry_2559 Acidiphilium cryptum JF-5 ketol-acid reductoisomerase YP_001235669.1 2813067 D 349163 CDS YP_001235670.1 148261543 5161897 2814193..2815125 1 NC_009484.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 2815125 5161897 Acry_2560 Acidiphilium cryptum JF-5 cysteine synthase A YP_001235670.1 2814193 D 349163 CDS YP_001235671.1 148261544 5161898 2815122..2815751 1 NC_009484.1 hypothetical protein 2815751 5161898 Acry_2561 Acidiphilium cryptum JF-5 hypothetical protein YP_001235671.1 2815122 D 349163 CDS YP_001235672.1 148261545 5161918 2815751..2816779 1 NC_009484.1 hypothetical protein 2816779 5161918 Acry_2562 Acidiphilium cryptum JF-5 hypothetical protein YP_001235672.1 2815751 D 349163 CDS YP_001235673.1 148261546 5161850 complement(2816787..2817629) 1 NC_009484.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 2817629 5161850 Acry_2563 Acidiphilium cryptum JF-5 HAD family hydrolase YP_001235673.1 2816787 R 349163 CDS YP_001235674.1 148261547 5161851 complement(2817626..2818897) 1 NC_009484.1 PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 2818897 5161851 Acry_2564 Acidiphilium cryptum JF-5 carbohydrate kinase YP_001235674.1 2817626 R 349163 CDS YP_001235675.1 148261548 5161721 2819101..2820111 1 NC_009484.1 PFAM: putative sugar-binding domain protein; DeoR family transcriptional regulator 2820111 5161721 Acry_2565 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001235675.1 2819101 D 349163 CDS YP_001235676.1 148261549 5161871 2820108..2821544 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2821544 5161871 Acry_2566 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001235676.1 2820108 D 349163 CDS YP_001235677.1 148261550 5161872 2821618..2822544 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2822544 5161872 Acry_2567 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001235677.1 2821618 D 349163 CDS YP_001235678.1 148261551 5161905 2822531..2823388 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2823388 5161905 Acry_2568 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001235678.1 2822531 D 349163 CDS YP_001235679.1 148261552 5160100 2823385..2824473 1 NC_009484.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2824473 5160100 Acry_2569 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235679.1 2823385 D 349163 CDS YP_001235680.1 148261553 5160101 2824470..2825567 1 NC_009484.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2825567 5160101 Acry_2570 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235680.1 2824470 D 349163 CDS YP_001235681.1 148261554 5162434 2825564..2827126 1 NC_009484.1 PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 2827126 5162434 Acry_2571 Acidiphilium cryptum JF-5 carbohydrate kinase YP_001235681.1 2825564 D 349163 CDS YP_001235682.1 148261555 5162404 2827116..2828165 1 NC_009484.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2828165 5162404 Acry_2572 Acidiphilium cryptum JF-5 D-isomer specific 2-hydroxyacid dehydrogenase YP_001235682.1 2827116 D 349163 CDS YP_001235683.1 148261556 5162405 2828205..2828873 1 NC_009484.1 PFAM: class II aldolase/adducin family protein; L-fuculose phosphate aldolase 2828873 5162405 Acry_2573 Acidiphilium cryptum JF-5 L-fuculose phosphate aldolase YP_001235683.1 2828205 D 349163 CDS YP_001235684.1 148261557 5162349 2828870..2830357 1 NC_009484.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 2830357 5162349 Acry_2574 Acidiphilium cryptum JF-5 glycerol-3-phosphate dehydrogenase YP_001235684.1 2828870 D 349163 CDS YP_001235685.1 148261558 5162233 2830354..2831346 1 NC_009484.1 hypothetical protein 2831346 5162233 Acry_2575 Acidiphilium cryptum JF-5 hypothetical protein YP_001235685.1 2830354 D 349163 CDS YP_001235686.1 148261559 5162234 complement(2831355..2831960) 1 NC_009484.1 PFAM: protein of unknown function UPF0126; hypothetical protein 2831960 5162234 Acry_2576 Acidiphilium cryptum JF-5 hypothetical protein YP_001235686.1 2831355 R 349163 CDS YP_001235687.1 148261560 5162105 2832058..2833341 1 NC_009484.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2833341 5162105 Acry_2577 Acidiphilium cryptum JF-5 acyl-CoA dehydrogenase domain-containing protein YP_001235687.1 2832058 D 349163 CDS YP_001235688.1 148261561 5161875 2833341..2834489 1 NC_009484.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2834489 5161875 Acry_2578 Acidiphilium cryptum JF-5 L-carnitine dehydratase/bile acid-inducible protein F YP_001235688.1 2833341 D 349163 CDS YP_001235689.1 148261562 5161876 2834486..2835343 1 NC_009484.1 hypothetical protein 2835343 5161876 Acry_2579 Acidiphilium cryptum JF-5 hypothetical protein YP_001235689.1 2834486 D 349163 CDS YP_001235690.1 148261563 5162086 2835718..2836587 1 NC_009484.1 PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 2836587 5162086 Acry_2580 Acidiphilium cryptum JF-5 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase YP_001235690.1 2835718 D 349163 CDS YP_001235691.1 148261564 5162018 2836815..2837735 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2837735 5162018 Acry_2581 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235691.1 2836815 D 349163 CDS YP_001235692.1 148261565 5162019 complement(2837805..2838125) 1 NC_009484.1 hypothetical protein 2838125 5162019 Acry_2582 Acidiphilium cryptum JF-5 hypothetical protein YP_001235692.1 2837805 R 349163 CDS YP_001235693.1 148261566 5161920 complement(2838103..2838756) 1 NC_009484.1 hypothetical protein 2838756 5161920 Acry_2583 Acidiphilium cryptum JF-5 hypothetical protein YP_001235693.1 2838103 R 349163 CDS YP_001235694.1 148261567 5161951 complement(2838796..2839551) 1 NC_009484.1 PFAM: peptidase C39, bacteriocin processing; peptidase C39, bacteriocin processing 2839551 5161951 Acry_2584 Acidiphilium cryptum JF-5 peptidase C39, bacteriocin processing YP_001235694.1 2838796 R 349163 CDS YP_001235695.1 148261568 5161952 complement(2839609..2840004) 1 NC_009484.1 hypothetical protein 2840004 5161952 Acry_2585 Acidiphilium cryptum JF-5 hypothetical protein YP_001235695.1 2839609 R 349163 CDS YP_001235696.1 148261569 5162232 complement(2840098..2840685) 1 NC_009484.1 hypothetical protein 2840685 5162232 Acry_2586 Acidiphilium cryptum JF-5 hypothetical protein YP_001235696.1 2840098 R 349163 CDS YP_001235697.1 148261570 5162480 complement(2840936..2842285) 1 NC_009484.1 hypothetical protein 2842285 5162480 Acry_2587 Acidiphilium cryptum JF-5 hypothetical protein YP_001235697.1 2840936 R 349163 CDS YP_001235698.1 148261571 5162481 complement(2842275..2843330) 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 2843330 5162481 Acry_2588 Acidiphilium cryptum JF-5 sigma-54 dependent trancsriptional regulator YP_001235698.1 2842275 R 349163 CDS YP_001235699.1 148261572 5162204 complement(2843379..2843684) 1 NC_009484.1 hypothetical protein 2843684 5162204 Acry_2589 Acidiphilium cryptum JF-5 hypothetical protein YP_001235699.1 2843379 R 349163 CDS YP_001235700.1 148261573 5162466 2843711..2845639 1 NC_009484.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 2845639 5162466 Acry_2590 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001235700.1 2843711 D 349163 CDS YP_001235701.1 148261574 5162467 complement(2845679..2846626) 1 NC_009484.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase 2846626 5162467 Acry_2591 Acidiphilium cryptum JF-5 gluconolactonase YP_001235701.1 2845679 R 349163 CDS YP_001235702.1 148261575 5162471 complement(2846623..2847573) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2847573 5162471 Acry_2592 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235702.1 2846623 R 349163 CDS YP_001235703.1 148261576 5162123 complement(2847570..2848568) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 2848568 5162123 Acry_2593 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235703.1 2847570 R 349163 CDS YP_001235704.1 148261577 5162124 complement(2848558..2850039) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2850039 5162124 Acry_2594 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235704.1 2848558 R 349163 CDS YP_001235705.1 148261578 5162096 complement(2850036..2851160) 1 NC_009484.1 sugar ABC transporter periplasmic protein 2851160 5162096 Acry_2595 Acidiphilium cryptum JF-5 sugar ABC transporter periplasmic protein YP_001235705.1 2850036 R 349163 CDS YP_001235706.1 148261579 5162117 complement(2851245..2852159) 1 NC_009484.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase 2852159 5162117 Acry_2596 Acidiphilium cryptum JF-5 gluconolactonase YP_001235706.1 2851245 R 349163 CDS YP_001235707.1 148261580 5162118 complement(2852262..2852882) 1 NC_009484.1 PFAM: KDPG and KHG aldolase; KDPG and KHG aldolase 2852882 5162118 Acry_2597 Acidiphilium cryptum JF-5 KDPG and KHG aldolase YP_001235707.1 2852262 R 349163 CDS YP_001235708.1 148261581 5162164 complement(2852870..2853760) 1 NC_009484.1 PFAM: 2-keto-3-deoxy-galactonokinase; 2-keto-3-deoxy-galactonokinase 2853760 5162164 Acry_2598 Acidiphilium cryptum JF-5 2-keto-3-deoxy-galactonokinase YP_001235708.1 2852870 R 349163 CDS YP_001235709.1 148261582 5162158 complement(2853788..2854561) 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2854561 5162158 Acry_2599 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235709.1 2853788 R 349163 CDS YP_001235710.1 148261583 5162159 complement(2854607..2855380) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2855380 5162159 Acry_2600 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235710.1 2854607 R 349163 CDS YP_001235711.1 148261584 5162160 complement(2855377..2856351) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2856351 5162160 Acry_2601 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235711.1 2855377 R 349163 CDS YP_001235712.1 148261585 5161946 complement(2856476..2857567) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 2857567 5161946 Acry_2602 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001235712.1 2856476 R 349163 CDS YP_001235713.1 148261586 5161947 2857789..2858607 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2858607 5161947 Acry_2603 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235713.1 2857789 D 349163 CDS YP_001235714.1 148261587 5162037 complement(2858574..2859011) 1 NC_009484.1 hypothetical protein 2859011 5162037 Acry_2604 Acidiphilium cryptum JF-5 hypothetical protein YP_001235714.1 2858574 R 349163 CDS YP_001235715.1 148261588 5162082 2859078..2860118 1 NC_009484.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2860118 5162082 Acry_2605 Acidiphilium cryptum JF-5 periplasmic binding protein/LacI transcriptional regulator YP_001235715.1 2859078 D 349163 CDS YP_001235716.1 148261589 5162083 2860210..2861292 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2861292 5162083 Acry_2606 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001235716.1 2860210 D 349163 CDS YP_001235717.1 148261590 5162054 2861289..2862071 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2862071 5162054 Acry_2607 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235717.1 2861289 D 349163 CDS YP_001235718.1 148261591 5162000 2862123..2863160 1 NC_009484.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2863160 paaA 5162000 paaA Acidiphilium cryptum JF-5 phenylacetate-CoA oxygenase subunit PaaA YP_001235718.1 2862123 D 349163 CDS YP_001235719.1 148261592 5162001 2863171..2863458 1 NC_009484.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2863458 paaB 5162001 paaB Acidiphilium cryptum JF-5 phenylacetate-CoA oxygenase subunit PaaB YP_001235719.1 2863171 D 349163 CDS YP_001235720.1 148261593 5162433 2863455..2864264 1 NC_009484.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaI 2864264 5162433 Acry_2610 Acidiphilium cryptum JF-5 phenylacetate-CoA oxygenase subunit PaaI YP_001235720.1 2863455 D 349163 CDS YP_001235721.1 148261594 5160409 2864261..2864752 1 NC_009484.1 TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; phenylacetate-CoA oxygenase subunit PaaJ 2864752 5160409 Acry_2611 Acidiphilium cryptum JF-5 phenylacetate-CoA oxygenase subunit PaaJ YP_001235721.1 2864261 D 349163 CDS YP_001235722.1 148261595 5160410 2864743..2865831 1 NC_009484.1 TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 2865831 5160410 Acry_2612 Acidiphilium cryptum JF-5 phenylacetate-CoA oxygenase/reductase subunit PaaK YP_001235722.1 2864743 D 349163 CDS YP_001235723.1 148261596 5160130 complement(2865839..2866279) 1 NC_009484.1 hypothetical protein 2866279 5160130 Acry_2613 Acidiphilium cryptum JF-5 hypothetical protein YP_001235723.1 2865839 R 349163 CDS YP_001235724.1 148261597 5161269 complement(2866276..2866911) 1 NC_009484.1 hypothetical protein 2866911 5161269 Acry_2614 Acidiphilium cryptum JF-5 hypothetical protein YP_001235724.1 2866276 R 349163 CDS YP_001235725.1 148261598 5161270 2867043..2868332 1 NC_009484.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 2868332 5161270 Acry_2615 Acidiphilium cryptum JF-5 C4-dicarboxylate transporter/malic acid transport protein YP_001235725.1 2867043 D 349163 CDS YP_001235726.1 148261599 5161328 2868501..2869502 1 NC_009484.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2869502 5161328 Acry_2616 Acidiphilium cryptum JF-5 dihydroxyacetone kinase subunit DhaK YP_001235726.1 2868501 D 349163 CDS YP_001235727.1 148261600 5162249 2869524..2870141 1 NC_009484.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; dihydroxyacetone kinase subunit DhaL 2870141 5162249 Acry_2617 Acidiphilium cryptum JF-5 dihydroxyacetone kinase subunit DhaL YP_001235727.1 2869524 D 349163 CDS YP_001235728.1 148261601 5162250 2870163..2872409 1 NC_009484.1 TIGRFAM: phosphocarrier, HPr family; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; PTS system fructose subfamily IIA component; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; dihydroxyacetone kinase, phosphotransfer subunit 2872409 5162250 Acry_2618 Acidiphilium cryptum JF-5 dihydroxyacetone kinase, phosphotransfer subunit YP_001235728.1 2870163 D 349163 CDS YP_001235729.1 148261602 5161355 complement(2872485..2873867) 1 NC_009484.1 hypothetical protein 2873867 5161355 Acry_2619 Acidiphilium cryptum JF-5 hypothetical protein YP_001235729.1 2872485 R 349163 CDS YP_001235730.1 148261603 5160814 complement(2874151..2875683) 1 NC_009484.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI 2875683 5160814 Acry_2620 Acidiphilium cryptum JF-5 Mg chelatase subunit ChlI YP_001235730.1 2874151 R 349163 CDS YP_001235731.1 148261604 5160815 complement(2875680..2876420) 1 NC_009484.1 PFAM: DNA repair protein RadC; DNA repair protein RadC 2876420 5160815 Acry_2621 Acidiphilium cryptum JF-5 DNA repair protein RadC YP_001235731.1 2875680 R 349163 CDS YP_001235732.1 148261605 5160840 2876667..2877017 1 NC_009484.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2877017 5160840 Acry_2622 Acidiphilium cryptum JF-5 endoribonuclease L-PSP YP_001235732.1 2876667 D 349163 CDS YP_001235733.1 148261606 5160906 2877351..2878238 1 NC_009484.1 PFAM: CHAP domain containing protein; CHAP domain-containing protein 2878238 5160906 Acry_2623 Acidiphilium cryptum JF-5 CHAP domain-containing protein YP_001235733.1 2877351 D 349163 CDS YP_001235734.1 148261607 5160907 complement(2878251..2879069) 1 NC_009484.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase 2879069 5160907 Acry_2624 Acidiphilium cryptum JF-5 dimethyladenosine transferase YP_001235734.1 2878251 R 349163 CDS YP_001235735.1 148261608 5162340 complement(2879066..2880349) 1 NC_009484.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2880349 5162340 Acry_2625 Acidiphilium cryptum JF-5 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001235735.1 2879066 R 349163 CDS YP_001235736.1 148261609 5160698 complement(2880346..2882586) 1 NC_009484.1 PFAM: OstA family protein; Organic solvent tolerance protein; organic solvent tolerance protein 2882586 5160698 Acry_2626 Acidiphilium cryptum JF-5 organic solvent tolerance protein YP_001235736.1 2880346 R 349163 CDS YP_001235737.1 148261610 5160699 complement(2882590..2883720) 1 NC_009484.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2883720 5160699 Acry_2627 Acidiphilium cryptum JF-5 YjgP/YjgQ family permease YP_001235737.1 2882590 R 349163 CDS YP_001235738.1 148261611 5160477 complement(2883717..2884877) 1 NC_009484.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 2884877 5160477 Acry_2628 Acidiphilium cryptum JF-5 YjgP/YjgQ family permease YP_001235738.1 2883717 R 349163 CDS YP_001235739.1 148261612 5160548 complement(2884879..2885604) 1 NC_009484.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2885604 5160548 Acry_2629 Acidiphilium cryptum JF-5 pyridoxine 5'-phosphate synthase YP_001235739.1 2884879 R 349163 CDS YP_001235740.1 148261613 5160549 complement(2885601..2886578) 1 NC_009484.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2886578 5160549 Acry_2630 Acidiphilium cryptum JF-5 4-hydroxythreonine-4-phosphate dehydrogenase YP_001235740.1 2885601 R 349163 CDS YP_001235741.1 148261614 5159450 complement(2886583..2887248) 1 NC_009484.1 hypothetical protein 2887248 5159450 Acry_2631 Acidiphilium cryptum JF-5 hypothetical protein YP_001235741.1 2886583 R 349163 CDS YP_001235742.1 148261615 5159770 complement(2887319..2887780) 1 NC_009484.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 2887780 5159770 Acry_2632 Acidiphilium cryptum JF-5 heat shock protein Hsp20 YP_001235742.1 2887319 R 349163 CDS YP_001235743.1 148261616 5159771 complement(2887983..2888210) 1 NC_009484.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2888210 rpmE 5159771 rpmE Acidiphilium cryptum JF-5 50S ribosomal protein L31 YP_001235743.1 2887983 R 349163 CDS YP_001235744.1 148261617 5160217 2888321..2888956 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2888956 5160217 Acry_2634 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001235744.1 2888321 D 349163 CDS YP_001235745.1 148261618 5159844 complement(2888940..2889569) 1 NC_009484.1 PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase II 2889569 5159844 Acry_2635 Acidiphilium cryptum JF-5 DNA-3-methyladenine glycosylase II YP_001235745.1 2888940 R 349163 CDS YP_001235746.1 148261619 5159845 complement(2889580..2890170) 1 NC_009484.1 hypothetical protein 2890170 5159845 Acry_2636 Acidiphilium cryptum JF-5 hypothetical protein YP_001235746.1 2889580 R 349163 CDS YP_001235747.1 148261620 5160339 complement(2890212..2892254) 1 NC_009484.1 hypothetical protein 2892254 5160339 Acry_2637 Acidiphilium cryptum JF-5 hypothetical protein YP_001235747.1 2890212 R 349163 CDS YP_001235748.1 148261621 5160390 2892448..2892675 1 NC_009484.1 hypothetical protein 2892675 5160390 Acry_2638 Acidiphilium cryptum JF-5 hypothetical protein YP_001235748.1 2892448 D 349163 CDS YP_001235749.1 148261622 5160391 2892747..2894324 1 NC_009484.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 2894324 5160391 Acry_2639 Acidiphilium cryptum JF-5 DEAD/DEAH box helicase YP_001235749.1 2892747 D 349163 CDS YP_001235750.1 148261623 5160406 complement(2894268..2896241) 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 2896241 5160406 Acry_2640 Acidiphilium cryptum JF-5 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001235750.1 2894268 R 349163 CDS YP_001235751.1 148261624 5160485 2896379..2897422 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2897422 5160485 Acry_2641 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235751.1 2896379 D 349163 CDS YP_001235752.1 148261625 5160486 2897483..2898499 1 NC_009484.1 PFAM: amidohydrolase 2; amidohydrolase 2 2898499 5160486 Acry_2642 Acidiphilium cryptum JF-5 amidohydrolase 2 YP_001235752.1 2897483 D 349163 CDS YP_001235753.1 148261626 5160357 2898505..2899275 1 NC_009484.1 PFAM: protein of unknown function DUF59; hypothetical protein 2899275 5160357 Acry_2643 Acidiphilium cryptum JF-5 hypothetical protein YP_001235753.1 2898505 D 349163 CDS YP_001235754.1 148261627 5159984 complement(2899257..2900195) 1 NC_009484.1 PFAM: DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit (DmsC) 2900195 5159984 Acry_2644 Acidiphilium cryptum JF-5 DMSO reductase anchor subunit (DmsC) YP_001235754.1 2899257 R 349163 CDS YP_001235755.1 148261628 5159985 complement(2900192..2900935) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2900935 5159985 Acry_2645 Acidiphilium cryptum JF-5 4Fe-4S ferredoxin YP_001235755.1 2900192 R 349163 CDS YP_001235756.1 148261629 5159971 complement(2900932..2903739) 1 NC_009484.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase Fe4S4 region 2903739 5159971 Acry_2646 Acidiphilium cryptum JF-5 molybdopterin oxidoreductase Fe4S4 region YP_001235756.1 2900932 R 349163 CDS YP_001235757.1 148261630 5160634 complement(2903815..2905251) 1 NC_009484.1 PFAM: Pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase 2905251 5160634 Acry_2647 Acidiphilium cryptum JF-5 pyridoxal-dependent decarboxylase YP_001235757.1 2903815 R 349163 CDS YP_001235758.1 148261631 5160635 complement(2905350..2908499) 1 NC_009484.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2908499 5160635 Acry_2648 Acidiphilium cryptum JF-5 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001235758.1 2905350 R 349163 CDS YP_001235759.1 148261632 5160048 complement(2908504..2909667) 1 NC_009484.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2909667 5160048 Acry_2649 Acidiphilium cryptum JF-5 RND family efflux transporter MFP subunit YP_001235759.1 2908504 R 349163 CDS YP_001235760.1 148261633 5160188 complement(2909881..2911467) 1 NC_009484.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2911467 5160188 Acry_2650 Acidiphilium cryptum JF-5 D-3-phosphoglycerate dehydrogenase YP_001235760.1 2909881 R 349163 CDS YP_001235761.1 148261634 5160189 complement(2911471..2912661) 1 NC_009484.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 2912661 5160189 Acry_2651 Acidiphilium cryptum JF-5 phosphoserine aminotransferase YP_001235761.1 2911471 R 349163 CDS YP_001235762.1 148261635 5160230 complement(2912766..2913509) 1 NC_009484.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A 2913509 5160230 Acry_2652 Acidiphilium cryptum JF-5 hemolysin A YP_001235762.1 2912766 R 349163 CDS YP_001235763.1 148261636 5160080 complement(2913517..2913849) 1 NC_009484.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2913849 5160080 Acry_2653 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001235763.1 2913517 R 349163 CDS YP_001235764.1 148261637 5160081 complement(2914129..2915376) 1 NC_009484.1 PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; Fmu (Sun) domain-containing protein 2915376 5160081 Acry_2654 Acidiphilium cryptum JF-5 Fmu (Sun) domain-containing protein YP_001235764.1 2914129 R 349163 CDS YP_001235765.1 148261638 5162070 2915602..2915907 1 NC_009484.1 PFAM: protein of unknown function YGGT; hypothetical protein 2915907 5162070 Acry_2655 Acidiphilium cryptum JF-5 hypothetical protein YP_001235765.1 2915602 D 349163 CDS YP_001235766.1 148261639 5159548 2915916..2916755 1 NC_009484.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase 2916755 5159548 Acry_2656 Acidiphilium cryptum JF-5 methylenetetrahydrofolate dehydrogenase YP_001235766.1 2915916 D 349163 CDS YP_001235767.1 148261640 5159549 complement(2916855..2918309) 1 NC_009484.1 PFAM: Sporulation domain protein; Lytic transglycosylase, catalytic; lytic transglycosylase 2918309 5159549 Acry_2657 Acidiphilium cryptum JF-5 lytic transglycosylase YP_001235767.1 2916855 R 349163 CDS YP_001235768.1 148261641 5159668 2918402..2918737 1 NC_009484.1 hypothetical protein 2918737 5159668 Acry_2658 Acidiphilium cryptum JF-5 hypothetical protein YP_001235768.1 2918402 D 349163 CDS YP_001235769.1 148261642 5159849 2918822..2919805 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 2919805 5159849 Acry_2659 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001235769.1 2918822 D 349163 CDS YP_001235770.1 148261643 5159850 complement(2919875..2920513) 1 NC_009484.1 PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 2920513 5159850 Acry_2660 Acidiphilium cryptum JF-5 GTP cyclohydrolase I YP_001235770.1 2919875 R 349163 CDS YP_001235771.1 148261644 5161453 complement(2920614..2921087) 1 NC_009484.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 2921087 apaG 5161453 apaG Acidiphilium cryptum JF-5 ApaG protein YP_001235771.1 2920614 R 349163 CDS YP_001235772.1 148261645 5161994 2921173..2922846 1 NC_009484.1 SMART: Tetratricopeptide domain protein; tetratricopeptide domain-containing protein 2922846 5161994 Acry_2662 Acidiphilium cryptum JF-5 tetratricopeptide domain-containing protein YP_001235772.1 2921173 D 349163 CDS YP_001235773.1 148261646 5161995 2922857..2923735 1 NC_009484.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2923735 5161995 Acry_2663 Acidiphilium cryptum JF-5 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001235773.1 2922857 D 349163 CDS YP_001235774.1 148261647 5161835 2923803..2924498 1 NC_009484.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2924498 5161835 Acry_2664 Acidiphilium cryptum JF-5 phosphoribosylformylglycinamidine synthase I YP_001235774.1 2923803 D 349163 CDS YP_001235775.1 148261648 5161441 2924495..2926678 1 NC_009484.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 2926678 5161441 Acry_2665 Acidiphilium cryptum JF-5 phosphoribosylformylglycinamidine synthase II YP_001235775.1 2924495 D 349163 CDS YP_001235776.1 148261649 5161442 2926697..2926930 1 NC_009484.1 PFAM: BolA family protein; BolA family protein 2926930 5161442 Acry_2666 Acidiphilium cryptum JF-5 BolA family protein YP_001235776.1 2926697 D 349163 CDS YP_001235777.1 148261650 5161894 2926964..2927311 1 NC_009484.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 2927311 5161894 Acry_2667 Acidiphilium cryptum JF-5 glutaredoxin-like protein YP_001235777.1 2926964 D 349163 CDS YP_001235778.1 148261651 5160623 2927362..2928561 1 NC_009484.1 hypothetical protein 2928561 5160623 Acry_2668 Acidiphilium cryptum JF-5 hypothetical protein YP_001235778.1 2927362 D 349163 CDS YP_001235779.1 148261652 5160624 complement(2928567..2932061) 1 NC_009484.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 2932061 5160624 Acry_2669 Acidiphilium cryptum JF-5 pyruvate carboxylase YP_001235779.1 2928567 R 349163 CDS YP_001235780.1 148261653 5162332 2932174..2933844 1 NC_009484.1 PFAM: amine oxidase; amine oxidase 2933844 5162332 Acry_2670 Acidiphilium cryptum JF-5 amine oxidase YP_001235780.1 2932174 D 349163 CDS YP_001235781.1 148261654 5162507 2933953..2934606 1 NC_009484.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2934606 5162507 Acry_2671 Acidiphilium cryptum JF-5 multiple antibiotic resistance (MarC)-like protein YP_001235781.1 2933953 D 349163 CDS YP_001235782.1 148261655 5162508 complement(2934850..2935470) 1 NC_009484.1 hypothetical protein 2935470 5162508 Acry_2672 Acidiphilium cryptum JF-5 hypothetical protein YP_001235782.1 2934850 R 349163 CDS YP_001235783.1 148261656 5161984 2935481..2935696 1 NC_009484.1 hypothetical protein 2935696 5161984 Acry_2673 Acidiphilium cryptum JF-5 hypothetical protein YP_001235783.1 2935481 D 349163 CDS YP_001235784.1 148261657 5162131 complement(2935866..2936570) 1 NC_009484.1 hypothetical protein 2936570 5162131 Acry_2674 Acidiphilium cryptum JF-5 hypothetical protein YP_001235784.1 2935866 R 349163 CDS YP_001235785.1 148261658 5162132 complement(2936632..2937966) 1 NC_009484.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2937966 gltX 5162132 gltX Acidiphilium cryptum JF-5 glutamyl-tRNA synthetase YP_001235785.1 2936632 R 349163 CDS YP_001235786.1 148261659 5161354 2938058..2939248 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2939248 5161354 Acry_2676 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235786.1 2938058 D 349163 CDS YP_001235787.1 148261660 5160483 2939309..2939758 1 NC_009484.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 2939758 5160483 Acry_2677 Acidiphilium cryptum JF-5 manganese transport regulator MntR YP_001235787.1 2939309 D 349163 CDS YP_001235788.1 148261661 5160484 2939903..2940358 1 NC_009484.1 hypothetical protein 2940358 5160484 Acry_2678 Acidiphilium cryptum JF-5 hypothetical protein YP_001235788.1 2939903 D 349163 CDS YP_001235789.1 148261662 5161350 complement(2940374..2941432) 1 NC_009484.1 PFAM: protein of unknown function UPF0118; hypothetical protein 2941432 5161350 Acry_2679 Acidiphilium cryptum JF-5 hypothetical protein YP_001235789.1 2940374 R 349163 CDS YP_001235790.1 148261663 5162108 complement(2941441..2941716) 1 NC_009484.1 PFAM: acylphosphatase; acylphosphatase 2941716 5162108 Acry_2680 Acidiphilium cryptum JF-5 acylphosphatase YP_001235790.1 2941441 R 349163 CDS YP_001235791.1 148261664 5162109 complement(2941713..2942414) 1 NC_009484.1 PFAM: ATP12 ATPase; ATP12 ATPase 2942414 5162109 Acry_2681 Acidiphilium cryptum JF-5 ATP12 ATPase YP_001235791.1 2941713 R 349163 CDS YP_001235792.1 148261665 5161935 complement(2942425..2945112) 1 NC_009484.1 PFAM: AsmA family protein; AsmA family protein 2945112 5161935 Acry_2682 Acidiphilium cryptum JF-5 AsmA family protein YP_001235792.1 2942425 R 349163 CDS YP_001235793.1 148261666 5162500 complement(2945176..2947077) 1 NC_009484.1 hypothetical protein 2947077 5162500 Acry_2683 Acidiphilium cryptum JF-5 hypothetical protein YP_001235793.1 2945176 R 349163 CDS YP_001235794.1 148261667 5162501 complement(2947083..2948102) 1 NC_009484.1 PFAM: protein of unknown function DUF1022; hypothetical protein 2948102 5162501 Acry_2684 Acidiphilium cryptum JF-5 hypothetical protein YP_001235794.1 2947083 R 349163 CDS YP_001235795.1 148261668 5162511 2948221..2949180 1 NC_009484.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 2949180 5162511 Acry_2685 Acidiphilium cryptum JF-5 succinylglutamate desuccinylase/aspartoacylase YP_001235795.1 2948221 D 349163 CDS YP_001235796.1 148261669 5160453 complement(2949191..2950069) 1 NC_009484.1 PFAM: CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 2950069 5160453 Acry_2686 Acidiphilium cryptum JF-5 CDP-alcohol phosphatidyltransferase YP_001235796.1 2949191 R 349163 CDS YP_001235797.1 148261670 5160454 complement(2950066..2950755) 1 NC_009484.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2950755 5160454 Acry_2687 Acidiphilium cryptum JF-5 phosphatidylserine decarboxylase YP_001235797.1 2950066 R 349163 CDS YP_001235798.1 148261671 5160966 complement(2950816..2951901) 1 NC_009484.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 2951901 5160966 Acry_2688 Acidiphilium cryptum JF-5 peptidoglycan-binding LysM YP_001235798.1 2950816 R 349163 CDS YP_001235799.1 148261672 5160264 2951995..2952579 1 NC_009484.1 PFAM: conserved hypothetical protein 730; hypothetical protein 2952579 5160264 Acry_2689 Acidiphilium cryptum JF-5 hypothetical protein YP_001235799.1 2951995 D 349163 CDS YP_001235800.1 148261673 5160265 complement(2952725..2953597) 1 NC_009484.1 ribonuclease G and E-like protein 2953597 5160265 Acry_2690 Acidiphilium cryptum JF-5 ribonuclease G and E-like protein YP_001235800.1 2952725 R 349163 CDS YP_001235801.1 148261674 5161917 complement(2953594..2954160) 1 NC_009484.1 TIGRFAM: maf protein; PFAM: Maf family protein; maf protein 2954160 5161917 Acry_2691 Acidiphilium cryptum JF-5 maf protein YP_001235801.1 2953594 R 349163 CDS YP_001235802.1 148261675 5161522 complement(2954174..2954392) 1 NC_009484.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2954392 infA 5161522 infA Acidiphilium cryptum JF-5 translation initiation factor IF-1 YP_001235802.1 2954174 R 349163 CDS YP_001235803.1 148261676 5161523 complement(2954445..2955755) 1 NC_009484.1 PFAM: histidinol dehydrogenase; histidinol dehydrogenase 2955755 5161523 Acry_2693 Acidiphilium cryptum JF-5 histidinol dehydrogenase YP_001235803.1 2954445 R 349163 CDS YP_001235804.1 148261677 5159707 complement(2955752..2956465) 1 NC_009484.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 2956465 hisG 5159707 hisG Acidiphilium cryptum JF-5 ATP phosphoribosyltransferase catalytic subunit YP_001235804.1 2955752 R 349163 CDS YP_001235805.1 148261678 5159821 2956513..2957457 1 NC_009484.1 PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase 2957457 5159821 Acry_2695 Acidiphilium cryptum JF-5 pyruvate carboxyltransferase YP_001235805.1 2956513 D 349163 CDS YP_001235806.1 148261679 5159822 2957468..2958646 1 NC_009484.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2958646 5159822 Acry_2696 Acidiphilium cryptum JF-5 L-carnitine dehydratase/bile acid-inducible protein F YP_001235806.1 2957468 D 349163 CDS YP_001235807.1 148261680 5161472 2958674..2959546 1 NC_009484.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2959546 5161472 Acry_2697 Acidiphilium cryptum JF-5 3-hydroxyisobutyrate dehydrogenase YP_001235807.1 2958674 D 349163 CDS YP_001235808.1 148261681 5161477 complement(2959538..2959756) 1 NC_009484.1 hypothetical protein 2959756 5161477 Acry_2698 Acidiphilium cryptum JF-5 hypothetical protein YP_001235808.1 2959538 R 349163 CDS YP_001235809.1 148261682 5161478 2959852..2960790 1 NC_009484.1 hypothetical protein 2960790 5161478 Acry_2699 Acidiphilium cryptum JF-5 hypothetical protein YP_001235809.1 2959852 D 349163 CDS YP_001235810.1 148261683 5159857 2960807..2961979 1 NC_009484.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM protein 2961979 5159857 Acry_2700 Acidiphilium cryptum JF-5 radical SAM protein YP_001235810.1 2960807 D 349163 CDS YP_001235811.1 148261684 5161552 2962005..2962712 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2962712 5161552 Acry_2701 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235811.1 2962005 D 349163 CDS YP_001235812.1 148261685 5161553 2962859..2963161 1 NC_009484.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2963161 rpmB 5161553 rpmB Acidiphilium cryptum JF-5 50S ribosomal protein L28 YP_001235812.1 2962859 D 349163 CDS YP_001235813.1 148261686 5161203 2963363..2963866 1 NC_009484.1 hypothetical protein 2963866 5161203 Acry_2703 Acidiphilium cryptum JF-5 hypothetical protein YP_001235813.1 2963363 D 349163 CDS YP_001235814.1 148261687 5161543 2963863..2964675 1 NC_009484.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2964675 5161543 Acry_2704 Acidiphilium cryptum JF-5 pyrroline-5-carboxylate reductase YP_001235814.1 2963863 D 349163 CDS YP_001235815.1 148261688 5161544 2965020..2966549 1 NC_009484.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2966549 5161544 Acry_2705 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001235815.1 2965020 D 349163 CDS YP_001235816.1 148261689 5161810 2966555..2966857 1 NC_009484.1 hypothetical protein 2966857 5161810 Acry_2706 Acidiphilium cryptum JF-5 hypothetical protein YP_001235816.1 2966555 D 349163 CDS YP_001235817.1 148261690 5159589 2966854..2967219 1 NC_009484.1 PFAM: response regulator receiver; response regulator receiver protein 2967219 5159589 Acry_2707 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001235817.1 2966854 D 349163 CDS YP_001235818.1 148261691 5159590 2967216..2969423 1 NC_009484.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 2969423 5159590 Acry_2708 Acidiphilium cryptum JF-5 CheA signal transduction histidine kinase YP_001235818.1 2967216 D 349163 CDS YP_001235819.1 148261692 5162601 2969427..2969891 1 NC_009484.1 PFAM: CheW domain protein; putative CheW protein 2969891 5162601 Acry_2709 Acidiphilium cryptum JF-5 putative CheW protein YP_001235819.1 2969427 D 349163 CDS YP_001235820.1 148261693 5162525 2969888..2970784 1 NC_009484.1 PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 2970784 5162525 Acry_2710 Acidiphilium cryptum JF-5 protein-glutamate O-methyltransferase YP_001235820.1 2969888 D 349163 CDS YP_001235821.1 148261694 5162526 2970781..2971833 1 NC_009484.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2971833 5162526 Acry_2711 Acidiphilium cryptum JF-5 chemotaxis-specific methylesterase YP_001235821.1 2970781 D 349163 CDS YP_001235822.1 148261695 5159605 2971833..2972228 1 NC_009484.1 PFAM: response regulator receiver; response regulator receiver protein 2972228 5159605 Acry_2712 Acidiphilium cryptum JF-5 response regulator receiver protein YP_001235822.1 2971833 D 349163 CDS YP_001235823.1 148261696 5159675 2972225..2972797 1 NC_009484.1 PFAM: CheD family protein; MCP proteins methylation stimulator CheD 2972797 5159675 Acry_2713 Acidiphilium cryptum JF-5 MCP proteins methylation stimulator CheD YP_001235823.1 2972225 D 349163 CDS YP_001235824.1 148261697 5159676 2972814..2973212 1 NC_009484.1 hypothetical protein 2973212 5159676 Acry_2714 Acidiphilium cryptum JF-5 hypothetical protein YP_001235824.1 2972814 D 349163 CDS YP_001235825.1 148261698 5159577 2973448..2973747 1 NC_009484.1 hypothetical protein 2973747 5159577 Acry_2715 Acidiphilium cryptum JF-5 hypothetical protein YP_001235825.1 2973448 D 349163 CDS YP_001235826.1 148261699 5161632 complement(2973767..2974312) 1 NC_009484.1 PFAM: protein of unknown function DUF1486; hypothetical protein 2974312 5161632 Acry_2716 Acidiphilium cryptum JF-5 hypothetical protein YP_001235826.1 2973767 R 349163 CDS YP_001235827.1 148261700 5161633 2974512..2975348 1 NC_009484.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 2975348 5161633 Acry_2717 Acidiphilium cryptum JF-5 beta-lactamase domain-containing protein YP_001235827.1 2974512 D 349163 CDS YP_001235828.1 148261701 5161849 complement(2975412..2976302) 1 NC_009484.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 2976302 5161849 Acry_2718 Acidiphilium cryptum JF-5 RNA polymerase factor sigma-32 YP_001235828.1 2975412 R 349163 CDS YP_001235829.1 148261702 5161485 complement(2976587..2977585) 1 NC_009484.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 2977585 5161485 Acry_2719 Acidiphilium cryptum JF-5 RluA family pseudouridine synthase YP_001235829.1 2976587 R 349163 CDS YP_001235830.1 148261703 5161486 2977636..2978004 1 NC_009484.1 hypothetical protein 2978004 5161486 Acry_2720 Acidiphilium cryptum JF-5 hypothetical protein YP_001235830.1 2977636 D 349163 CDS YP_001235831.1 148261704 5162073 2978619..2979230 1 NC_009484.1 PFAM: protein of unknown function DUF1555; hypothetical protein 2979230 5162073 Acry_2721 Acidiphilium cryptum JF-5 hypothetical protein YP_001235831.1 2978619 D 349163 CDS YP_001235832.1 148261705 5160722 2979382..2980788 1 NC_009484.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 2980788 5160722 Acry_2722 Acidiphilium cryptum JF-5 tricarballylate dehydrogenase YP_001235832.1 2979382 D 349163 CDS YP_001235833.1 148261706 5160723 2980775..2981893 1 NC_009484.1 TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; CitB domain-containing protein 2981893 5160723 Acry_2723 Acidiphilium cryptum JF-5 CitB domain-containing protein YP_001235833.1 2980775 D 349163 CDS YP_001235834.1 148261707 5162099 2981990..2983294 1 NC_009484.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 2983294 5162099 Acry_2724 Acidiphilium cryptum JF-5 major facilitator transporter YP_001235834.1 2981990 D 349163 CDS YP_001235835.1 148261708 5160016 complement(2983350..2983892) 1 NC_009484.1 hypothetical protein 2983892 5160016 Acry_2725 Acidiphilium cryptum JF-5 hypothetical protein YP_001235835.1 2983350 R 349163 CDS YP_001235836.1 148261709 5160017 complement(2984412..2986178) 1 NC_009484.1 PFAM: Amidase; amidase 2986178 5160017 Acry_2726 Acidiphilium cryptum JF-5 amidase YP_001235836.1 2984412 R 349163 CDS YP_001235837.1 148261710 5160021 complement(2986175..2989663) 1 NC_009484.1 TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin carboxylase 2989663 5160021 Acry_2727 Acidiphilium cryptum JF-5 biotin carboxylase YP_001235837.1 2986175 R 349163 CDS YP_001235838.1 148261711 5160678 complement(2989660..2990292) 1 NC_009484.1 hypothetical protein 2990292 5160678 Acry_2728 Acidiphilium cryptum JF-5 hypothetical protein YP_001235838.1 2989660 R 349163 CDS YP_001235839.1 148261712 5160679 complement(2990300..2991082) 1 NC_009484.1 hypothetical protein 2991082 5160679 Acry_2729 Acidiphilium cryptum JF-5 hypothetical protein YP_001235839.1 2990300 R 349163 CDS YP_001235840.1 148261713 5162087 complement(2991155..2991997) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2991997 5162087 Acry_2730 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235840.1 2991155 R 349163 CDS YP_001235841.1 148261714 5161734 complement(2991994..2992812) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2992812 5161734 Acry_2731 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001235841.1 2991994 R 349163 CDS YP_001235842.1 148261715 5161735 complement(2992821..2993900) 1 NC_009484.1 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein 2993900 5161735 Acry_2732 Acidiphilium cryptum JF-5 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein YP_001235842.1 2992821 R 349163 CDS YP_001235843.1 148261716 5161002 2994341..2994916 1 NC_009484.1 hypothetical protein 2994916 5161002 Acry_2733 Acidiphilium cryptum JF-5 hypothetical protein YP_001235843.1 2994341 D 349163 CDS YP_001235844.1 148261717 5161255 2995015..2996388 1 NC_009484.1 glucose/sorbosone dehydrogenase-like protein 2996388 5161255 Acry_2734 Acidiphilium cryptum JF-5 glucose/sorbosone dehydrogenase-like protein YP_001235844.1 2995015 D 349163 CDS YP_001235845.1 148261718 5161256 complement(2996407..2999511) 1 NC_009484.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2999511 5161256 Acry_2735 Acidiphilium cryptum JF-5 acriflavin resistance protein YP_001235845.1 2996407 R 349163 CDS YP_001235846.1 148261719 5160047 complement(2999521..3000441) 1 NC_009484.1 hypothetical protein 3000441 5160047 Acry_2736 Acidiphilium cryptum JF-5 hypothetical protein YP_001235846.1 2999521 R 349163 CDS YP_001235847.1 148261720 5160979 complement(3000438..3001841) 1 NC_009484.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 3001841 5160979 Acry_2737 Acidiphilium cryptum JF-5 outer membrane efflux protein YP_001235847.1 3000438 R 349163 CDS YP_001235848.1 148261721 5160980 complement(3002001..3002930) 1 NC_009484.1 PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3002930 5160980 Acry_2738 Acidiphilium cryptum JF-5 dihydrodipicolinate synthetase YP_001235848.1 3002001 R 349163 CDS YP_001235849.1 148261722 5161032 3003165..3003938 1 NC_009484.1 PFAM: protein of unknown function DUF347; hypothetical protein 3003938 5161032 Acry_2739 Acidiphilium cryptum JF-5 hypothetical protein YP_001235849.1 3003165 D 349163 CDS YP_001235850.1 148261723 5162344 3003987..3004838 1 NC_009484.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3004838 5162344 Acry_2740 Acidiphilium cryptum JF-5 undecaprenyl diphosphate synthase YP_001235850.1 3003987 D 349163 CDS YP_001235851.1 148261724 5162345 3005056..3005967 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3005967 5162345 Acry_2741 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235851.1 3005056 D 349163 CDS YP_001235852.1 148261725 5161162 3006015..3006917 1 NC_009484.1 hypothetical protein 3006917 5161162 Acry_2742 Acidiphilium cryptum JF-5 hypothetical protein YP_001235852.1 3006015 D 349163 CDS YP_001235853.1 148261726 5161167 3006914..3007744 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3007744 5161167 Acry_2743 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001235853.1 3006914 D 349163 CDS YP_001235854.1 148261727 5161168 3007760..3008488 1 NC_009484.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3008488 5161168 Acry_2744 Acidiphilium cryptum JF-5 polar amino acid ABC transporter inner membrane subunit YP_001235854.1 3007760 D 349163 CDS YP_001235855.1 148261728 5160883 3008481..3009227 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3009227 5160883 Acry_2745 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235855.1 3008481 D 349163 CDS YP_001235856.1 148261729 5159758 3009251..3010636 1 NC_009484.1 PFAM: fumarate lyase; fumarate lyase 3010636 5159758 Acry_2746 Acidiphilium cryptum JF-5 fumarate lyase YP_001235856.1 3009251 D 349163 CDS YP_001235857.1 148261730 5159759 complement(3010889..3011377) 1 NC_009484.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3011377 5159759 Acry_2747 Acidiphilium cryptum JF-5 xanthine-guanine phosphoribosyltransferase YP_001235857.1 3010889 R 349163 CDS YP_001235858.1 148261731 5161322 complement(3011377..3011730) 1 NC_009484.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; export-related chaperone CsaA 3011730 5161322 Acry_2748 Acidiphilium cryptum JF-5 export-related chaperone CsaA YP_001235858.1 3011377 R 349163 CDS YP_001235859.1 148261732 5160739 3011819..3013429 1 NC_009484.1 PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3013429 5160739 Acry_2749 Acidiphilium cryptum JF-5 gamma-glutamyltransferase YP_001235859.1 3011819 D 349163 CDS YP_001235860.1 148261733 5160740 3013494..3014120 1 NC_009484.1 hypothetical protein 3014120 5160740 Acry_2750 Acidiphilium cryptum JF-5 hypothetical protein YP_001235860.1 3013494 D 349163 CDS YP_001235861.1 148261734 5160675 3014146..3016131 1 NC_009484.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3016131 5160675 Acry_2751 Acidiphilium cryptum JF-5 elongation factor G YP_001235861.1 3014146 D 349163 CDS YP_001235862.1 148261735 5161376 3016153..3016938 1 NC_009484.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3016938 5161376 Acry_2752 Acidiphilium cryptum JF-5 enoyl-CoA hydratase/isomerase YP_001235862.1 3016153 D 349163 CDS YP_001235863.1 148261736 5161377 complement(3017008..3017730) 1 NC_009484.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; acetoacetyl-CoA reductase 3017730 5161377 Acry_2753 Acidiphilium cryptum JF-5 acetoacetyl-CoA reductase YP_001235863.1 3017008 R 349163 CDS YP_001235864.1 148261737 5161391 complement(3017838..3018542) 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3018542 5161391 Acry_2754 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001235864.1 3017838 R 349163 CDS YP_001235865.1 148261738 5161361 complement(3018539..3019009) 1 NC_009484.1 PFAM: OsmC family protein; OsmC family protein 3019009 5161361 Acry_2755 Acidiphilium cryptum JF-5 OsmC family protein YP_001235865.1 3018539 R 349163 CDS YP_001235866.1 148261739 5161362 complement(3019020..3019376) 1 NC_009484.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 3019376 5161362 Acry_2756 Acidiphilium cryptum JF-5 putative 6-pyruvoyl tetrahydropterin synthase YP_001235866.1 3019020 R 349163 CDS YP_001235867.1 148261740 5160300 complement(3019379..3020014) 1 NC_009484.1 organic radical activating-like protein 3020014 5160300 Acry_2757 Acidiphilium cryptum JF-5 organic radical activating-like protein YP_001235867.1 3019379 R 349163 CDS YP_001235868.1 148261741 5160663 3020122..3021006 1 NC_009484.1 hypothetical protein 3021006 5160663 Acry_2758 Acidiphilium cryptum JF-5 hypothetical protein YP_001235868.1 3020122 D 349163 CDS YP_001235869.1 148261742 5160664 3021230..3022447 1 NC_009484.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase 3022447 5160664 Acry_2759 Acidiphilium cryptum JF-5 polyhydroxyalkanoate depolymerase YP_001235869.1 3021230 D 349163 CDS YP_001235870.1 148261743 5162397 complement(3022428..3023075) 1 NC_009484.1 TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3023075 5162397 Acry_2760 Acidiphilium cryptum JF-5 dephospho-CoA kinase YP_001235870.1 3022428 R 349163 CDS YP_001235871.1 148261744 5160011 complement(3023072..3023902) 1 NC_009484.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase 3023902 5160011 Acry_2761 Acidiphilium cryptum JF-5 shikimate 5-dehydrogenase YP_001235871.1 3023072 R 349163 CDS YP_001235872.1 148261745 5160012 3023995..3024696 1 NC_009484.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3024696 5160012 Acry_2762 Acidiphilium cryptum JF-5 short-chain dehydrogenase/reductase SDR YP_001235872.1 3023995 D 349163 CDS YP_001235873.1 148261746 5161812 complement(3024714..3025328) 1 NC_009484.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 3025328 5161812 Acry_2763 Acidiphilium cryptum JF-5 DSBA oxidoreductase YP_001235873.1 3024714 R 349163 CDS YP_001235874.1 148261747 5161772 3025442..3026293 1 NC_009484.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3026293 purU 5161772 purU Acidiphilium cryptum JF-5 formyltetrahydrofolate deformylase YP_001235874.1 3025442 D 349163 CDS YP_001235875.1 148261748 5161773 3026318..3026995 1 NC_009484.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 3026995 5161773 Acry_2765 Acidiphilium cryptum JF-5 DNA polymerase III subunit epsilon YP_001235875.1 3026318 D 349163 CDS YP_001235876.1 148261749 5161865 complement(3027121..3029211) 1 NC_009484.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B 3029211 5161865 Acry_2766 Acidiphilium cryptum JF-5 oligopeptidase B YP_001235876.1 3027121 R 349163 CDS YP_001235877.1 148261750 5160043 complement(3029225..3030898) 1 NC_009484.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; formate--tetrahydrofolate ligase 3030898 5160043 Acry_2767 Acidiphilium cryptum JF-5 formate--tetrahydrofolate ligase YP_001235877.1 3029225 R 349163 CDS YP_001235878.1 148261751 5160044 3030993..3031442 1 NC_009484.1 hypothetical protein 3031442 5160044 Acry_2768 Acidiphilium cryptum JF-5 hypothetical protein YP_001235878.1 3030993 D 349163 CDS YP_001235879.1 148261752 5160104 3031471..3032385 1 NC_009484.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; putative agmatinase 3032385 5160104 Acry_2769 Acidiphilium cryptum JF-5 putative agmatinase YP_001235879.1 3031471 D 349163 CDS YP_001235880.1 148261753 5159786 complement(3032448..3033419) 1 NC_009484.1 hypothetical protein 3033419 5159786 Acry_2770 Acidiphilium cryptum JF-5 hypothetical protein YP_001235880.1 3032448 R 349163 CDS YP_001235881.1 148261754 5159787 3033436..3034797 1 NC_009484.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3034797 5159787 Acry_2771 Acidiphilium cryptum JF-5 amidase YP_001235881.1 3033436 D 349163 CDS YP_001235882.1 148261755 5161977 3034905..3036080 1 NC_009484.1 fumarylacetoacetate (FAA) hydrolase family protein 3036080 5161977 Acry_2772 Acidiphilium cryptum JF-5 fumarylacetoacetate (FAA) hydrolase family protein YP_001235882.1 3034905 D 349163 CDS YP_001235883.1 148261756 5161955 complement(3036203..3036835) 1 NC_009484.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3036835 5161955 Acry_2773 Acidiphilium cryptum JF-5 lysine exporter protein LysE/YggA YP_001235883.1 3036203 R 349163 CDS YP_001235884.1 148261757 5161956 3036910..3037797 1 NC_009484.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3037797 5161956 Acry_2774 Acidiphilium cryptum JF-5 chromosome replication initiation inhibitor protein YP_001235884.1 3036910 D 349163 CDS YP_001235885.1 148261758 5161987 complement(3037868..3038722) 1 NC_009484.1 integral membrane protein-like protein 3038722 5161987 Acry_2775 Acidiphilium cryptum JF-5 integral membrane protein-like protein YP_001235885.1 3037868 R 349163 CDS YP_001235886.1 148261759 5162503 complement(3038889..3039767) 1 NC_009484.1 PFAM: aldo/keto reductase; putative oxidoreductase 3039767 5162503 Acry_2776 Acidiphilium cryptum JF-5 putative oxidoreductase YP_001235886.1 3038889 R 349163 CDS YP_001235887.1 148261760 5162504 3039896..3040765 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3040765 5162504 Acry_2777 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235887.1 3039896 D 349163 CDS YP_001235888.1 148261761 5160163 3040880..3041824 1 NC_009484.1 PFAM: protein of unknown function DUF849; hypothetical protein 3041824 5160163 Acry_2778 Acidiphilium cryptum JF-5 hypothetical protein YP_001235888.1 3040880 D 349163 CDS YP_001235889.1 148261762 5160445 3041870..3042808 1 NC_009484.1 Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 3042808 5160445 Acry_2779 Acidiphilium cryptum JF-5 3-hydroxyacyl-CoA dehydrogenase YP_001235889.1 3041870 D 349163 CDS YP_001235890.1 148261763 5160446 3042995..3044083 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 3044083 5160446 Acry_2780 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001235890.1 3042995 D 349163 CDS YP_001235891.1 148261764 5162425 3044080..3045564 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3045564 5162425 Acry_2781 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235891.1 3044080 D 349163 CDS YP_001235892.1 148261765 5160611 3045575..3046516 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 3046516 5160611 Acry_2782 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235892.1 3045575 D 349163 CDS YP_001235893.1 148261766 5160612 3046526..3047464 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 3047464 5160612 Acry_2783 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001235893.1 3046526 D 349163 CDS YP_001235894.1 148261767 5159997 complement(3047498..3048787) 1 NC_009484.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3048787 5159997 Acry_2784 Acidiphilium cryptum JF-5 adenylosuccinate synthetase YP_001235894.1 3047498 R 349163 CDS YP_001235895.1 148261768 5159794 complement(3048792..3049928) 1 NC_009484.1 PFAM: tRNA synthetase, class II (G, H, P and S); tRNA synthetase 3049928 5159794 Acry_2785 Acidiphilium cryptum JF-5 tRNA synthetase YP_001235895.1 3048792 R 349163 CDS YP_001235896.1 148261769 5159795 3050078..3051535 1 NC_009484.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 3051535 5159795 Acry_2786 Acidiphilium cryptum JF-5 membrane bound O-acyl transferase, MBOAT family protein YP_001235896.1 3050078 D 349163 CDS YP_001235897.1 148261770 5161101 3051535..3052605 1 NC_009484.1 hypothetical protein 3052605 5161101 Acry_2787 Acidiphilium cryptum JF-5 hypothetical protein YP_001235897.1 3051535 D 349163 CDS YP_001235898.1 148261771 5160876 complement(3052499..3053059) 1 NC_009484.1 PFAM: nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase 3053059 5160876 Acry_2788 Acidiphilium cryptum JF-5 nucleoside 2-deoxyribosyltransferase YP_001235898.1 3052499 R 349163 CDS YP_001235899.1 148261772 5160877 complement(3053056..3055062) 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 3055062 5160877 Acry_2789 Acidiphilium cryptum JF-5 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001235899.1 3053056 R 349163 CDS YP_001235900.1 148261773 5160543 3055360..3057207 1 NC_009484.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3057207 5160543 Acry_2790 Acidiphilium cryptum JF-5 Pyrrolo-quinoline quinone YP_001235900.1 3055360 D 349163 CDS YP_001235901.1 148261774 5160466 3057344..3058213 1 NC_009484.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3058213 5160466 Acry_2791 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001235901.1 3057344 D 349163 CDS YP_001235902.1 148261775 5160467 3058254..3059003 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 3059003 5160467 Acry_2792 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001235902.1 3058254 D 349163 CDS YP_001235903.1 148261776 5159896 3059061..3059633 1 NC_009484.1 catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 3059633 5159896 Acry_2793 Acidiphilium cryptum JF-5 glutathione-dependent formaldehyde-activating protein YP_001235903.1 3059061 D 349163 CDS YP_001235904.1 148261777 5161224 3059743..3060765 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3060765 5161224 Acry_2794 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235904.1 3059743 D 349163 CDS YP_001235905.1 148261778 5161225 3060765..3062870 1 NC_009484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 3062870 5161225 Acry_2795 Acidiphilium cryptum JF-5 TonB-dependent receptor YP_001235905.1 3060765 D 349163 CDS YP_001235906.1 148261779 5162227 complement(3062883..3064379) 1 NC_009484.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 3064379 5162227 Acry_2796 Acidiphilium cryptum JF-5 FAD linked oxidase domain-containing protein YP_001235906.1 3062883 R 349163 CDS YP_001235907.1 148261780 5160035 3064491..3066164 1 NC_009484.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3066164 5160035 Acry_2797 Acidiphilium cryptum JF-5 Pyrrolo-quinoline quinone YP_001235907.1 3064491 D 349163 CDS YP_001235908.1 148261781 5160036 3066164..3067396 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 3067396 5160036 Acry_2798 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001235908.1 3066164 D 349163 CDS YP_001235909.1 148261782 5160218 complement(3067479..3069152) 1 NC_009484.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 3069152 5160218 Acry_2799 Acidiphilium cryptum JF-5 sulfite reductase subunit beta YP_001235909.1 3067479 R 349163 CDS YP_001235910.1 148261783 5160173 complement(3069182..3069865) 1 NC_009484.1 PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 3069865 5160173 Acry_2800 Acidiphilium cryptum JF-5 phosphoadenosine phosphosulfate reductase YP_001235910.1 3069182 R 349163 CDS YP_001235911.1 148261784 5160174 complement(3069865..3071613) 1 NC_009484.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 3071613 5160174 Acry_2801 Acidiphilium cryptum JF-5 flavodoxin/nitric oxide synthase YP_001235911.1 3069865 R 349163 CDS YP_001235912.1 148261785 5160706 complement(3071618..3072409) 1 NC_009484.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 3072409 5160706 Acry_2802 Acidiphilium cryptum JF-5 uroporphyrin-III C-methyltransferase YP_001235912.1 3071618 R 349163 CDS YP_001235913.1 148261786 5160708 complement(3072406..3072966) 1 NC_009484.1 TIGRFAM: siroheme synthase; siroheme synthase 3072966 5160708 Acry_2803 Acidiphilium cryptum JF-5 siroheme synthase YP_001235913.1 3072406 R 349163 CDS YP_001235914.1 148261787 5160709 3073118..3073627 1 NC_009484.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 3073627 5160709 Acry_2804 Acidiphilium cryptum JF-5 AsnC family transcriptional regulator YP_001235914.1 3073118 D 349163 CDS YP_001235915.1 148261788 5160787 complement(3073650..3074189) 1 NC_009484.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 3074189 5160787 Acry_2805 Acidiphilium cryptum JF-5 molybdenum cofactor biosynthesis protein B YP_001235915.1 3073650 R 349163 CDS YP_001235916.1 148261789 5161030 3074272..3075087 1 NC_009484.1 PFAM: protein of unknown function DUF1295; hypothetical protein 3075087 5161030 Acry_2806 Acidiphilium cryptum JF-5 hypothetical protein YP_001235916.1 3074272 D 349163 CDS YP_001235917.1 148261790 5161031 3075157..3076182 1 NC_009484.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 3076182 5161031 Acry_2807 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001235917.1 3075157 D 349163 CDS YP_001235918.1 148261791 5161086 3076182..3076748 1 NC_009484.1 hypothetical protein 3076748 5161086 Acry_2808 Acidiphilium cryptum JF-5 hypothetical protein YP_001235918.1 3076182 D 349163 CDS YP_001235919.1 148261792 5161698 complement(3078424..3079197) 1 NC_009484.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 3079197 5161698 Acry_2810 Acidiphilium cryptum JF-5 diguanylate phosphodiesterase YP_001235919.1 3078424 R 349163 CDS YP_001235920.1 148261793 5161161 3079459..3079830 1 NC_009484.1 SMART: regulatory protein, ArsR; regulatory protein ArsR 3079830 5161161 Acry_2811 Acidiphilium cryptum JF-5 regulatory protein ArsR YP_001235920.1 3079459 D 349163 CDS YP_001235921.1 148261794 5161247 3079827..3080249 1 NC_009484.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 3080249 5161247 Acry_2812 Acidiphilium cryptum JF-5 arsenate reductase YP_001235921.1 3079827 D 349163 CDS YP_001235922.1 148261795 5160091 3080280..3081596 1 NC_009484.1 TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; arsenical pump membrane protein 3081596 5160091 Acry_2813 Acidiphilium cryptum JF-5 arsenical pump membrane protein YP_001235922.1 3080280 D 349163 CDS YP_001235923.1 148261796 5161699 complement(3081943..3082665) 1 NC_009484.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3082665 5161699 Acry_2814 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001235923.1 3081943 R 349163 CDS YP_001235924.1 148261797 5161571 3082884..3084038 1 NC_009484.1 PFAM: GTP cyclohydrolase II; GTP cyclohydrolase II 3084038 5161571 Acry_2815 Acidiphilium cryptum JF-5 GTP cyclohydrolase II YP_001235924.1 3082884 D 349163 CDS YP_001235925.1 148261798 5161727 3084047..3084562 1 NC_009484.1 hypothetical protein 3084562 5161727 Acry_2816 Acidiphilium cryptum JF-5 hypothetical protein YP_001235925.1 3084047 D 349163 CDS YP_001235926.1 148261799 5161728 complement(3084556..3084885) 1 NC_009484.1 hypothetical protein 3084885 5161728 Acry_2817 Acidiphilium cryptum JF-5 hypothetical protein YP_001235926.1 3084556 R 349163 CDS YP_001235927.1 148261800 5160581 3085081..3085443 1 NC_009484.1 PFAM: Septum formation initiator; septum formation initiator 3085443 5160581 Acry_2818 Acidiphilium cryptum JF-5 septum formation initiator YP_001235927.1 3085081 D 349163 CDS YP_001235928.1 148261801 5162103 3085651..3086688 1 NC_009484.1 PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase 3086688 5162103 Acry_2819 Acidiphilium cryptum JF-5 pyruvate dehydrogenase YP_001235928.1 3085651 D 349163 CDS YP_001235929.1 148261802 5162104 3086691..3088040 1 NC_009484.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 3088040 5162104 Acry_2820 Acidiphilium cryptum JF-5 pyruvate dehydrogenase subunit beta YP_001235929.1 3086691 D 349163 CDS YP_001235930.1 148261803 5159905 3088054..3089331 1 NC_009484.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3089331 5159905 Acry_2821 Acidiphilium cryptum JF-5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_001235930.1 3088054 D 349163 CDS YP_001235931.1 148261804 5159972 3089328..3089837 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3089837 5159972 Acry_2822 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001235931.1 3089328 D 349163 CDS YP_001235932.1 148261805 5159973 3089848..3091245 1 NC_009484.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; dihydrolipoamide dehydrogenase 3091245 5159973 Acry_2823 Acidiphilium cryptum JF-5 dihydrolipoamide dehydrogenase YP_001235932.1 3089848 D 349163 CDS YP_001235933.1 148261806 5160374 3091252..3092214 1 NC_009484.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3092214 5160374 Acry_2824 Acidiphilium cryptum JF-5 lipoyl synthase YP_001235933.1 3091252 D 349163 CDS YP_001235934.1 148261807 5162426 3092216..3092686 1 NC_009484.1 PFAM: cyclase/dehydrase; cyclase/dehydrase 3092686 5162426 Acry_2825 Acidiphilium cryptum JF-5 cyclase/dehydrase YP_001235934.1 3092216 D 349163 CDS YP_001235935.1 148261808 5162427 3092688..3093746 1 NC_009484.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase 3093746 5162427 Acry_2826 Acidiphilium cryptum JF-5 aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001235935.1 3092688 D 349163 CDS YP_001235936.1 148261809 5162375 complement(3093889..3095022) 1 NC_009484.1 PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase 3095022 5162375 Acry_2827 Acidiphilium cryptum JF-5 cytochrome-c peroxidase YP_001235936.1 3093889 R 349163 CDS YP_001235937.1 148261810 5162592 complement(3095186..3095770) 1 NC_009484.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 3095770 5162592 Acry_2828 Acidiphilium cryptum JF-5 NADPH-dependent FMN reductase YP_001235937.1 3095186 R 349163 CDS YP_001235938.1 148261811 5162593 complement(3095778..3096803) 1 NC_009484.1 PFAM: aldo/keto reductase; aldo/keto reductase 3096803 5162593 Acry_2829 Acidiphilium cryptum JF-5 aldo/keto reductase YP_001235938.1 3095778 R 349163 CDS YP_001235939.1 148261812 5159641 3096908..3097819 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3097819 5159641 Acry_2830 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235939.1 3096908 D 349163 CDS YP_001235940.1 148261813 5160788 3097819..3098088 1 NC_009484.1 hypothetical protein 3098088 5160788 Acry_2831 Acidiphilium cryptum JF-5 hypothetical protein YP_001235940.1 3097819 D 349163 CDS YP_001235941.1 148261814 5160789 complement(3098153..3098647) 1 NC_009484.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 3098647 ilvH 5160789 ilvH Acidiphilium cryptum JF-5 acetolactate synthase 3 regulatory subunit YP_001235941.1 3098153 R 349163 CDS YP_001235942.1 148261815 5161829 complement(3098722..3100503) 1 NC_009484.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; acetolactate synthase large subunit 3100503 5161829 Acry_2833 Acidiphilium cryptum JF-5 acetolactate synthase large subunit YP_001235942.1 3098722 R 349163 CDS YP_001235943.1 148261816 5161729 complement(3100557..3101393) 1 NC_009484.1 PFAM: tRNA isopentenyltransferase; tRNA isopentenyltransferase 3101393 5161729 Acry_2834 Acidiphilium cryptum JF-5 tRNA isopentenyltransferase YP_001235943.1 3100557 R 349163 CDS YP_001235944.1 148261817 5161730 3101407..3102405 1 NC_009484.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 3102405 5161730 Acry_2835 Acidiphilium cryptum JF-5 phosphoserine phosphatase SerB YP_001235944.1 3101407 D 349163 CDS YP_001235945.1 148261818 5161282 complement(3102395..3102862) 1 NC_009484.1 PFAM: CoA-binding domain protein; CoA-binding domain-containing protein 3102862 5161282 Acry_2836 Acidiphilium cryptum JF-5 CoA-binding domain-containing protein YP_001235945.1 3102395 R 349163 CDS YP_001235946.1 148261819 5162222 3102868..3104457 1 NC_009484.1 PFAM: glycoside hydrolase, family 17; glycoside hydrolase family protein 3104457 5162222 Acry_2837 Acidiphilium cryptum JF-5 glycoside hydrolase family protein YP_001235946.1 3102868 D 349163 CDS YP_001235947.1 148261820 5162223 complement(3104472..3105833) 1 NC_009484.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Serine-type D-Ala-D-Ala carboxypeptidase 3105833 5162223 Acry_2838 Acidiphilium cryptum JF-5 Serine-type D-Ala-D-Ala carboxypeptidase YP_001235947.1 3104472 R 349163 CDS YP_001235948.1 148261821 5160570 3106195..3106728 1 NC_009484.1 TIGRFAM: phasin family protein; phasin family protein 3106728 5160570 Acry_2839 Acidiphilium cryptum JF-5 phasin family protein YP_001235948.1 3106195 D 349163 CDS YP_001235949.1 148261822 5160582 3106762..3107205 1 NC_009484.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 3107205 5160582 Acry_2840 Acidiphilium cryptum JF-5 ATP-dependent Clp protease adaptor protein ClpS YP_001235949.1 3106762 D 349163 CDS YP_001235950.1 148261823 5160583 3107184..3107702 1 NC_009484.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3107702 5160583 Acry_2841 Acidiphilium cryptum JF-5 N-acetyltransferase GCN5 YP_001235950.1 3107184 D 349163 CDS YP_001235951.1 148261824 5162335 3107866..3108072 1 NC_009484.1 PFAM: Cold-shock protein, DNA-binding; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3108072 5162335 Acry_2842 Acidiphilium cryptum JF-5 cold-shock DNA-binding domain-containing protein YP_001235951.1 3107866 D 349163 CDS YP_001235952.1 148261825 5161366 complement(3108131..3108775) 1 NC_009484.1 hypothetical protein 3108775 5161366 Acry_2843 Acidiphilium cryptum JF-5 hypothetical protein YP_001235952.1 3108131 R 349163 CDS YP_001235953.1 148261826 5161367 complement(3108849..3110084) 1 NC_009484.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 3110084 5161367 Acry_2844 Acidiphilium cryptum JF-5 DNA polymerase IV YP_001235953.1 3108849 R 349163 CDS YP_001235954.1 148261827 5161471 complement(3110136..3111062) 1 NC_009484.1 sterol desaturase-like protein 3111062 5161471 Acry_2845 Acidiphilium cryptum JF-5 sterol desaturase-like protein YP_001235954.1 3110136 R 349163 CDS YP_001235955.1 148261828 5162523 complement(3111065..3112066) 1 NC_009484.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; YVTN beta-propeller repeat-containing protein 3112066 5162523 Acry_2846 Acidiphilium cryptum JF-5 YVTN beta-propeller repeat-containing protein YP_001235955.1 3111065 R 349163 CDS YP_001235956.1 148261829 5162524 complement(3112063..3113358) 1 NC_009484.1 PFAM: O-antigen polymerase; O-antigen polymerase 3113358 5162524 Acry_2847 Acidiphilium cryptum JF-5 O-antigen polymerase YP_001235956.1 3112063 R 349163 CDS YP_001235957.1 148261830 5159757 complement(3113385..3113960) 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 3113960 5159757 Acry_2848 Acidiphilium cryptum JF-5 type 11 methyltransferase YP_001235957.1 3113385 R 349163 CDS YP_001235958.1 148261831 5159546 3114001..3114765 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; alpha/beta hydrolase fold protein 3114765 5159546 Acry_2849 Acidiphilium cryptum JF-5 alpha/beta hydrolase fold protein YP_001235958.1 3114001 D 349163 CDS YP_001235959.1 148261832 5159547 complement(3114778..3115191) 1 NC_009484.1 PFAM: protein of unknown function DUF55; hypothetical protein 3115191 5159547 Acry_2850 Acidiphilium cryptum JF-5 hypothetical protein YP_001235959.1 3114778 R 349163 CDS YP_001235960.1 148261833 5159723 complement(3115188..3115481) 1 NC_009484.1 PFAM: YCII-related; hypothetical protein 3115481 5159723 Acry_2851 Acidiphilium cryptum JF-5 hypothetical protein YP_001235960.1 3115188 R 349163 CDS YP_001235961.1 148261834 5159724 3115621..3116433 1 NC_009484.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 3116433 5159724 Acry_2852 Acidiphilium cryptum JF-5 heme exporter protein CcmC YP_001235961.1 3115621 D 349163 CDS YP_001235962.1 148261835 5160196 3116599..3117120 1 NC_009484.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3117120 5160196 Acry_2853 Acidiphilium cryptum JF-5 cytochrome c-type biogenesis protein CcmE YP_001235962.1 3116599 D 349163 CDS YP_001235963.1 148261836 5159522 3117142..3119115 1 NC_009484.1 PFAM: cytochrome c assembly protein; cytochrome c assembly protein 3119115 5159522 Acry_2854 Acidiphilium cryptum JF-5 cytochrome c assembly protein YP_001235963.1 3117142 D 349163 CDS YP_001235964.1 148261837 5159523 3119125..3119679 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; alkyl hydroperoxide reductase 3119679 5159523 Acry_2855 Acidiphilium cryptum JF-5 alkyl hydroperoxide reductase YP_001235964.1 3119125 D 349163 CDS YP_001235965.1 148261838 5161004 3119676..3120167 1 NC_009484.1 PFAM: cytochrome C biogenesis protein; cytochrome C biogenesis protein 3120167 5161004 Acry_2856 Acidiphilium cryptum JF-5 cytochrome C biogenesis protein YP_001235965.1 3119676 D 349163 CDS YP_001235966.1 148261839 5161005 3120164..3120940 1 NC_009484.1 cytochrome c biogenesis factor-like protein 3120940 5161005 Acry_2857 Acidiphilium cryptum JF-5 cytochrome c biogenesis factor-like protein YP_001235966.1 3120164 D 349163 CDS YP_001235967.1 148261840 5159775 3120937..3121113 1 NC_009484.1 PFAM: protein of unknown function DUF1674; hypothetical protein 3121113 5159775 Acry_2858 Acidiphilium cryptum JF-5 hypothetical protein YP_001235967.1 3120937 D 349163 CDS YP_001235968.1 148261841 5161395 complement(3121149..3122969) 1 NC_009484.1 PFAM: Cl- channel, voltage-gated family protein; Cl- channel voltage-gated family protein 3122969 5161395 Acry_2859 Acidiphilium cryptum JF-5 Cl- channel voltage-gated family protein YP_001235968.1 3121149 R 349163 CDS YP_001235969.1 148261842 5161396 complement(3123145..3124671) 1 NC_009484.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 3124671 5161396 Acry_2860 Acidiphilium cryptum JF-5 hypothetical protein YP_001235969.1 3123145 R 349163 CDS YP_001235970.1 148261843 5160591 complement(3124753..3125736) 1 NC_009484.1 hypothetical protein 3125736 5160591 Acry_2861 Acidiphilium cryptum JF-5 hypothetical protein YP_001235970.1 3124753 R 349163 CDS YP_001235971.1 148261844 5160592 complement(3125765..3126376) 1 NC_009484.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3126376 5160592 Acry_2862 Acidiphilium cryptum JF-5 OmpA/MotB domain-containing protein YP_001235971.1 3125765 R 349163 CDS YP_001235972.1 148261845 5160014 complement(3126492..3128921) 1 NC_009484.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 3128921 5160014 Acry_2863 Acidiphilium cryptum JF-5 ATP-dependent helicase HrpB YP_001235972.1 3126492 R 349163 CDS YP_001235973.1 148261846 5160060 3128969..3130996 1 NC_009484.1 PFAM: cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 3130996 5160060 Acry_2864 Acidiphilium cryptum JF-5 cytochrome c biogenesis protein, transmembrane region YP_001235973.1 3128969 D 349163 CDS YP_001235974.1 148261847 5160061 3131530..3132153 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 3132153 5160061 Acry_2865 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001235974.1 3131530 D 349163 CDS YP_001235975.1 148261848 5162303 complement(3132175..3133416) 1 NC_009484.1 branched-chain amino acid ABC transporter periplasmic component-like protein 3133416 5162303 Acry_2866 Acidiphilium cryptum JF-5 branched-chain amino acid ABC transporter periplasmic component-like protein YP_001235975.1 3132175 R 349163 CDS YP_001235976.1 148261849 5162304 3133504..3134505 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3134505 5162304 Acry_2867 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001235976.1 3133504 D 349163 CDS YP_001235977.1 148261850 5161976 3134794..3136068 1 NC_009484.1 hypothetical protein 3136068 5161976 Acry_2868 Acidiphilium cryptum JF-5 hypothetical protein YP_001235977.1 3134794 D 349163 CDS YP_001235978.1 148261851 5161006 complement(3136211..3136996) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3136996 5161006 Acry_2869 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001235978.1 3136211 R 349163 CDS YP_001235979.1 148261852 5161007 complement(3136993..3137775) 1 NC_009484.1 PFAM: protein of unknown function DUF140; hypothetical protein 3137775 5161007 Acry_2870 Acidiphilium cryptum JF-5 hypothetical protein YP_001235979.1 3136993 R 349163 CDS YP_001235980.1 148261853 5159502 complement(3137784..3138857) 1 NC_009484.1 TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 3138857 5159502 Acry_2871 Acidiphilium cryptum JF-5 alanine racemase YP_001235980.1 3137784 R 349163 CDS YP_001235981.1 148261854 5159503 complement(3138854..3139663) 1 NC_009484.1 hypothetical protein 3139663 5159503 Acry_2872 Acidiphilium cryptum JF-5 hypothetical protein YP_001235981.1 3138854 R 349163 CDS YP_001235982.1 148261855 5160018 complement(3139693..3141177) 1 NC_009484.1 unwinds double stranded DNA; replicative DNA helicase 3141177 5160018 Acry_2873 Acidiphilium cryptum JF-5 replicative DNA helicase YP_001235982.1 3139693 R 349163 CDS YP_001235983.1 148261856 5159683 3141575..3142273 1 NC_009484.1 hypothetical protein 3142273 5159683 Acry_2874 Acidiphilium cryptum JF-5 hypothetical protein YP_001235983.1 3141575 D 349163 CDS YP_001235984.1 148261857 5159684 3142354..3142797 1 NC_009484.1 hypothetical protein 3142797 5159684 Acry_2875 Acidiphilium cryptum JF-5 hypothetical protein YP_001235984.1 3142354 D 349163 CDS YP_001235985.1 148261858 5159599 complement(3142787..3143218) 1 NC_009484.1 PFAM: RbsD or FucU transport; transport protein RbsD/FucU 3143218 5159599 Acry_2876 Acidiphilium cryptum JF-5 transport protein RbsD/FucU YP_001235985.1 3142787 R 349163 CDS YP_001235986.1 148261859 5159600 complement(3143229..3144131) 1 NC_009484.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 3144131 5159600 Acry_2877 Acidiphilium cryptum JF-5 ribokinase-like domain-containing protein YP_001235986.1 3143229 R 349163 CDS YP_001235987.1 148261860 5159685 complement(3144260..3145579) 1 NC_009484.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 3145579 5159685 Acry_2878 Acidiphilium cryptum JF-5 ammonium transporter YP_001235987.1 3144260 R 349163 CDS YP_001235988.1 148261861 5159612 3145888..3146334 1 NC_009484.1 hypothetical protein 3146334 5159612 Acry_2879 Acidiphilium cryptum JF-5 hypothetical protein YP_001235988.1 3145888 D 349163 CDS YP_001235989.1 148261862 5159613 complement(3146353..3146790) 1 NC_009484.1 PFAM: CBS domain containing protein; signal-transduction protein 3146790 5159613 Acry_2880 Acidiphilium cryptum JF-5 signal-transduction protein YP_001235989.1 3146353 R 349163 CDS YP_001235990.1 148261863 5159655 complement(3146893..3147789) 1 NC_009484.1 TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase 3147789 5159655 Acry_2881 Acidiphilium cryptum JF-5 pyridoxal kinase YP_001235990.1 3146893 R 349163 CDS YP_001235991.1 148261864 5159656 3147853..3148935 1 NC_009484.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3148935 5159656 Acry_2882 Acidiphilium cryptum JF-5 NADH:flavin oxidoreductase YP_001235991.1 3147853 D 349163 CDS YP_001235992.1 148261865 5160064 3149085..3149780 1 NC_009484.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 3149780 5160064 Acry_2883 Acidiphilium cryptum JF-5 LexA repressor YP_001235992.1 3149085 D 349163 CDS YP_001235993.1 148261866 5160153 3149834..3150604 1 NC_009484.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3150604 5160153 Acry_2884 Acidiphilium cryptum JF-5 heat shock protein DnaJ domain-containing protein YP_001235993.1 3149834 D 349163 CDS YP_001235994.1 148261867 5160154 3150601..3151263 1 NC_009484.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 3151263 5160154 Acry_2885 Acidiphilium cryptum JF-5 N-acetylmuramoyl-L-alanine amidase YP_001235994.1 3150601 D 349163 CDS YP_001235995.1 148261868 5161978 3151795..3154233 1 NC_009484.1 TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3154233 5161978 Acry_2886 Acidiphilium cryptum JF-5 DNA gyrase subunit B YP_001235995.1 3151795 D 349163 CDS YP_001235996.1 148261869 5159701 complement(3154485..3154781) 1 NC_009484.1 hypothetical protein 3154781 5159701 Acry_2887 Acidiphilium cryptum JF-5 hypothetical protein YP_001235996.1 3154485 R 349163 CDS YP_001235997.1 148261870 5160201 complement(3154759..3155658) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3155658 5160201 Acry_2888 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001235997.1 3154759 R 349163 CDS YP_001235998.1 148261871 5159981 3155723..3156664 1 NC_009484.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 3156664 5159981 Acry_2889 Acidiphilium cryptum JF-5 auxin efflux carrier YP_001235998.1 3155723 D 349163 CDS YP_001235999.1 148261872 5159982 3156877..3160086 1 NC_009484.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 3160086 5159982 Acry_2890 Acidiphilium cryptum JF-5 diguanylate cyclase/phosphodiesterase YP_001235999.1 3156877 D 349163 CDS YP_001236000.1 148261873 5159484 3160265..3160537 1 NC_009484.1 hypothetical protein 3160537 5159484 Acry_2891 Acidiphilium cryptum JF-5 hypothetical protein YP_001236000.1 3160265 D 349163 CDS YP_001236001.1 148261874 5159485 complement(3160589..3161014) 1 NC_009484.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3161014 5159485 Acry_2892 Acidiphilium cryptum JF-5 glutathione-dependent formaldehyde-activating protein YP_001236001.1 3160589 R 349163 CDS YP_001236002.1 148261875 5159964 3161096..3162214 1 NC_009484.1 hypothetical protein 3162214 5159964 Acry_2893 Acidiphilium cryptum JF-5 hypothetical protein YP_001236002.1 3161096 D 349163 CDS YP_001236003.1 148261876 5159882 complement(3162192..3162587) 1 NC_009484.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 3162587 5159882 Acry_2894 Acidiphilium cryptum JF-5 XRE family transcriptional regulator YP_001236003.1 3162192 R 349163 CDS YP_001236004.1 148261877 5159883 complement(3162598..3163146) 1 NC_009484.1 PFAM: Smr protein/MutS2; Smr protein/MutS2 3163146 5159883 Acry_2895 Acidiphilium cryptum JF-5 Smr protein/MutS2 YP_001236004.1 3162598 R 349163 CDS YP_001236005.1 148261878 5159782 complement(3163130..3163834) 1 NC_009484.1 PFAM: protein of unknown function DUF162; hypothetical protein 3163834 5159782 Acry_2896 Acidiphilium cryptum JF-5 hypothetical protein YP_001236005.1 3163130 R 349163 CDS YP_001236006.1 148261879 5159783 complement(3163831..3165252) 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF162; hypothetical protein 3165252 5159783 Acry_2897 Acidiphilium cryptum JF-5 hypothetical protein YP_001236006.1 3163831 R 349163 CDS YP_001236007.1 148261880 5159472 3165426..3166535 1 NC_009484.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 3166535 5159472 Acry_2898 Acidiphilium cryptum JF-5 lytic transglycosylase YP_001236007.1 3165426 D 349163 CDS YP_001236008.1 148261881 5159716 complement(3166652..3168061) 1 NC_009484.1 PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; TolB domain-containing protein 3168061 5159716 Acry_2899 Acidiphilium cryptum JF-5 TolB domain-containing protein YP_001236008.1 3166652 R 349163 CDS YP_001236009.1 148261882 5159717 complement(3168093..3169055) 1 NC_009484.1 hypothetical protein 3169055 5159717 Acry_2900 Acidiphilium cryptum JF-5 hypothetical protein YP_001236009.1 3168093 R 349163 CDS YP_001236010.1 148261883 5160125 complement(3169109..3169552) 1 NC_009484.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 3169552 5160125 Acry_2901 Acidiphilium cryptum JF-5 biopolymer transport protein ExbD/TolR YP_001236010.1 3169109 R 349163 CDS YP_001236011.1 148261884 5160126 complement(3169555..3170271) 1 NC_009484.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 3170271 5160126 Acry_2902 Acidiphilium cryptum JF-5 MotA/TolQ/ExbB proton channel YP_001236011.1 3169555 R 349163 CDS YP_001236012.1 148261885 5159703 complement(3170274..3170774) 1 NC_009484.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 3170774 5159703 Acry_2903 Acidiphilium cryptum JF-5 thioesterase superfamily protein YP_001236012.1 3170274 R 349163 CDS YP_001236013.1 148261886 5159952 complement(3170771..3171814) 1 NC_009484.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3171814 ruvB 5159952 ruvB Acidiphilium cryptum JF-5 Holliday junction DNA helicase RuvB YP_001236013.1 3170771 R 349163 CDS YP_001236014.1 148261887 5159953 complement(3171811..3172425) 1 NC_009484.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3172425 ruvA 5159953 ruvA Acidiphilium cryptum JF-5 Holliday junction DNA helicase RuvA YP_001236014.1 3171811 R 349163 CDS YP_001236015.1 148261888 5160606 complement(3172422..3172925) 1 NC_009484.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3172925 ruvC 5160606 ruvC Acidiphilium cryptum JF-5 Holliday junction resolvase YP_001236015.1 3172422 R 349163 CDS YP_001236016.1 148261889 5160607 complement(3172964..3173725) 1 NC_009484.1 PFAM: protein of unknown function DUF28; hypothetical protein 3173725 5160607 Acry_2907 Acidiphilium cryptum JF-5 hypothetical protein YP_001236016.1 3172964 R 349163 CDS YP_001236017.1 148261890 5160120 3173851..3175056 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3175056 5160120 Acry_2908 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001236017.1 3173851 D 349163 CDS YP_001236018.1 148261891 5159704 3175053..3176141 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3176141 5159704 Acry_2909 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001236018.1 3175053 D 349163 CDS YP_001236019.1 148261892 5159705 complement(3176099..3177316) 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 3177316 5159705 Acry_2910 Acidiphilium cryptum JF-5 major facilitator transporter YP_001236019.1 3176099 R 349163 CDS YP_001236020.1 148261893 5161026 3178082..3178534 1 NC_009484.1 hypothetical protein 3178534 5161026 Acry_2911 Acidiphilium cryptum JF-5 hypothetical protein YP_001236020.1 3178082 D 349163 CDS YP_001236021.1 148261894 5159494 3178531..3179094 1 NC_009484.1 PFAM: phosphonate metabolism; phosphonate metabolism protein 3179094 5159494 Acry_2912 Acidiphilium cryptum JF-5 phosphonate metabolism protein YP_001236021.1 3178531 D 349163 CDS YP_001236022.1 148261895 5159977 3179096..3180178 1 NC_009484.1 PFAM: phosphonate metabolism; phosphonate metabolism protein 3180178 5159977 Acry_2913 Acidiphilium cryptum JF-5 phosphonate metabolism protein YP_001236022.1 3179096 D 349163 CDS YP_001236023.1 148261896 5159626 3180165..3180998 1 NC_009484.1 PFAM: phosphonate metabolism PhnJ; phosphonate metabolism PhnJ 3180998 5159626 Acry_2914 Acidiphilium cryptum JF-5 phosphonate metabolism PhnJ YP_001236023.1 3180165 D 349163 CDS YP_001236024.1 148261897 5159627 3180995..3181759 1 NC_009484.1 TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 3181759 phnK 5159627 phnK Acidiphilium cryptum JF-5 phosphonate C-P lyase system protein PhnK YP_001236024.1 3180995 D 349163 CDS YP_001236025.1 148261898 5159537 3181756..3182451 1 NC_009484.1 TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 3182451 5159537 Acry_2916 Acidiphilium cryptum JF-5 phosphonate C-P lyase system protein PhnL YP_001236025.1 3181756 D 349163 CDS YP_001236026.1 148261899 5159538 3182448..3183569 1 NC_009484.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; phosphonate metabolism protein PhnM 3183569 5159538 Acry_2917 Acidiphilium cryptum JF-5 phosphonate metabolism protein PhnM YP_001236026.1 3182448 D 349163 CDS YP_001236027.1 148261900 5159776 3183562..3184227 1 NC_009484.1 PFAM: protein of unknown function DUF1045; hypothetical protein 3184227 5159776 Acry_2918 Acidiphilium cryptum JF-5 hypothetical protein YP_001236027.1 3183562 D 349163 CDS YP_001236028.1 148261901 5160613 3184227..3184772 1 NC_009484.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 3184772 5160613 Acry_2919 Acidiphilium cryptum JF-5 phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_001236028.1 3184227 D 349163 CDS YP_001236029.1 148261902 5160614 complement(3184833..3185570) 1 NC_009484.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 3185570 5160614 Acry_2920 Acidiphilium cryptum JF-5 GntR family transcriptional regulator YP_001236029.1 3184833 R 349163 CDS YP_001236030.1 148261903 5160019 complement(3185629..3188271) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 3188271 5160019 Acry_2921 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001236030.1 3185629 R 349163 CDS YP_001236031.1 148261904 5160020 3188536..3188739 1 NC_009484.1 PFAM: ribosomal protein L35; 50S ribosomal protein L35 3188739 rpmI 5160020 rpmI Acidiphilium cryptum JF-5 50S ribosomal protein L35 YP_001236031.1 3188536 D 349163 CDS YP_001236032.1 148261905 5159601 3188753..3189109 1 NC_009484.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3189109 rplT 5159601 rplT Acidiphilium cryptum JF-5 50S ribosomal protein L20 YP_001236032.1 3188753 D 349163 CDS YP_001236033.1 148261906 5160095 complement(3189114..3190166) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3190166 5160095 Acry_2924 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001236033.1 3189114 R 349163 CDS YP_001236034.1 148261907 5160096 complement(3190150..3190977) 1 NC_009484.1 PFAM: metallophosphoesterase; metallophosphoesterase 3190977 5160096 Acry_2925 Acidiphilium cryptum JF-5 metallophosphoesterase YP_001236034.1 3190150 R 349163 CDS YP_001236035.1 148261908 5159993 complement(3191086..3191511) 1 NC_009484.1 PFAM: protein of unknown function DUF1486; hypothetical protein 3191511 5159993 Acry_2926 Acidiphilium cryptum JF-5 hypothetical protein YP_001236035.1 3191086 R 349163 CDS YP_001236036.1 148261909 5159994 3191627..3192631 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3192631 5159994 Acry_2927 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001236036.1 3191627 D 349163 CDS YP_001236037.1 148261910 5160040 3192791..3193549 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3193549 5160040 Acry_2928 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236037.1 3192791 D 349163 CDS YP_001236038.1 148261911 5159568 3193542..3194234 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3194234 5159568 Acry_2929 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236038.1 3193542 D 349163 CDS YP_001236039.1 148261912 5159569 3194256..3195491 1 NC_009484.1 ABC-type branched-chain amino acid transport systems periplasmic component-like protein 3195491 5159569 Acry_2930 Acidiphilium cryptum JF-5 ABC-type branched-chain amino acid transport systems periplasmic component-like protein YP_001236039.1 3194256 D 349163 CDS YP_001236040.1 148261913 5159802 3195522..3196409 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 3196409 5159802 Acry_2931 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001236040.1 3195522 D 349163 CDS YP_001236041.1 148261914 5159803 3196409..3197344 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 3197344 5159803 Acry_2932 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001236041.1 3196409 D 349163 CDS YP_001236042.1 148261915 5159812 3197351..3198832 1 NC_009484.1 PFAM: Amidase; amidase 3198832 5159812 Acry_2933 Acidiphilium cryptum JF-5 amidase YP_001236042.1 3197351 D 349163 CDS YP_001236043.1 148261916 5160292 3198985..3202053 1 NC_009484.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 3202053 5160292 Acry_2934 Acidiphilium cryptum JF-5 alpha amylase YP_001236043.1 3198985 D 349163 CDS YP_001236044.1 148261917 5160293 3202050..3205382 1 NC_009484.1 TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 3205382 5160293 Acry_2935 Acidiphilium cryptum JF-5 trehalose synthase YP_001236044.1 3202050 D 349163 CDS YP_001236045.1 148261918 5160180 3205366..3207531 1 NC_009484.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; 1,4-alpha-glucan-branching protein 3207531 5160180 Acry_2936 Acidiphilium cryptum JF-5 1,4-alpha-glucan-branching protein YP_001236045.1 3205366 D 349163 CDS YP_001236046.1 148261919 5160181 3207531..3209642 1 NC_009484.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 3209642 5160181 Acry_2937 Acidiphilium cryptum JF-5 glycogen debranching protein GlgX YP_001236046.1 3207531 D 349163 CDS YP_001236047.1 148261920 5160316 3209639..3211633 1 NC_009484.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 3211633 5160316 Acry_2938 Acidiphilium cryptum JF-5 4-alpha-glucanotransferase YP_001236047.1 3209639 D 349163 CDS YP_001236048.1 148261921 5160158 complement(3211662..3213350) 1 NC_009484.1 hypothetical protein 3213350 5160158 Acry_2939 Acidiphilium cryptum JF-5 hypothetical protein YP_001236048.1 3211662 R 349163 CDS YP_001236049.1 148261922 5160159 complement(3213376..3214332) 1 NC_009484.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 3214332 5160159 Acry_2940 Acidiphilium cryptum JF-5 glycosyl transferase family protein YP_001236049.1 3213376 R 349163 CDS YP_001236050.1 148261923 5160272 complement(3214565..3218296) 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3218296 5160272 Acry_2941 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001236050.1 3214565 R 349163 CDS YP_001236051.1 148261924 5160273 complement(3218327..3219760) 1 NC_009484.1 TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 3219760 5160273 Acry_2942 Acidiphilium cryptum JF-5 FkbM family methyltransferase YP_001236051.1 3218327 R 349163 CDS YP_001236052.1 148261925 5160588 complement(3220249..3222228) 1 NC_009484.1 hypothetical protein 3222228 5160588 Acry_2943 Acidiphilium cryptum JF-5 hypothetical protein YP_001236052.1 3220249 R 349163 CDS YP_001236053.1 148261926 5160182 complement(3222236..3223159) 1 NC_009484.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 3223159 5160182 Acry_2944 Acidiphilium cryptum JF-5 coproporphyrinogen III oxidase YP_001236053.1 3222236 R 349163 CDS YP_001236054.1 148261927 5160183 3223473..3224660 1 NC_009484.1 PFAM: Cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein 3224660 5160183 Acry_2945 Acidiphilium cryptum JF-5 cytochrome b/b6 domain-containing protein YP_001236054.1 3223473 D 349163 CDS YP_001236055.1 148261928 5160396 3224660..3225391 1 NC_009484.1 PFAM: cytochrome c1; cytochrome c1 3225391 5160396 Acry_2946 Acidiphilium cryptum JF-5 cytochrome c1 YP_001236055.1 3224660 D 349163 CDS YP_001236056.1 148261929 5160397 3225388..3226281 1 NC_009484.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 3226281 5160397 Acry_2947 Acidiphilium cryptum JF-5 5'-methylthioadenosine phosphorylase YP_001236056.1 3225388 D 349163 CDS YP_001236057.1 148261930 5160294 3226425..3227072 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxidase 3227072 5160294 Acry_2948 Acidiphilium cryptum JF-5 peroxidase YP_001236057.1 3226425 D 349163 CDS YP_001236058.1 148261931 5160596 3227216..3228019 1 NC_009484.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3228019 pstB 5160596 pstB Acidiphilium cryptum JF-5 phosphate transporter ATP-binding protein YP_001236058.1 3227216 D 349163 CDS YP_001236059.1 148261932 5160597 3228031..3228750 1 NC_009484.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 3228750 5160597 Acry_2950 Acidiphilium cryptum JF-5 phosphate uptake regulator PhoU YP_001236059.1 3228031 D 349163 CDS YP_001236060.1 148261933 5159610 3228765..3229475 1 NC_009484.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3229475 5159610 Acry_2951 Acidiphilium cryptum JF-5 two component transcriptional regulator YP_001236060.1 3228765 D 349163 CDS YP_001236061.1 148261934 5159611 3229605..3229811 1 NC_009484.1 hypothetical protein 3229811 5159611 Acry_2952 Acidiphilium cryptum JF-5 hypothetical protein YP_001236061.1 3229605 D 349163 CDS YP_001236062.1 148261935 5159745 3229808..3231268 1 NC_009484.1 PFAM: Na+/solute symporter; Na+/solute symporter 3231268 5159745 Acry_2953 Acidiphilium cryptum JF-5 Na+/solute symporter YP_001236062.1 3229808 D 349163 CDS YP_001236063.1 148261936 5160619 3231325..3232062 1 NC_009484.1 PFAM: protein of unknown function DUF1275; hypothetical protein 3232062 5160619 Acry_2954 Acidiphilium cryptum JF-5 hypothetical protein YP_001236063.1 3231325 D 349163 CDS YP_001236064.1 148261937 5160620 3232158..3232727 1 NC_009484.1 hypothetical protein 3232727 5160620 Acry_2955 Acidiphilium cryptum JF-5 hypothetical protein YP_001236064.1 3232158 D 349163 CDS YP_001236065.1 148261938 5160269 3233137..3233865 1 NC_009484.1 PFAM: sugar transferase; sugar transferase 3233865 5160269 Acry_2956 Acidiphilium cryptum JF-5 sugar transferase YP_001236065.1 3233137 D 349163 CDS YP_001236066.1 148261939 5160270 3233846..3235939 1 NC_009484.1 TIGRFAM: histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 3235939 5160270 Acry_2957 Acidiphilium cryptum JF-5 integral membrane sensor signal transduction histidine kinase YP_001236066.1 3233846 D 349163 CDS YP_001236067.1 148261940 5160312 3235932..3237350 1 NC_009484.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator 3237350 5160312 Acry_2958 Acidiphilium cryptum JF-5 two component sigma54 specific Fis family transcriptional regulator YP_001236067.1 3235932 D 349163 CDS YP_001236068.1 148261941 5159555 3237413..3240232 1 NC_009484.1 PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; hypothetical protein 3240232 5159555 Acry_2959 Acidiphilium cryptum JF-5 hypothetical protein YP_001236068.1 3237413 D 349163 CDS YP_001236069.1 148261942 5159556 3240242..3241552 1 NC_009484.1 PFAM: O-antigen polymerase; O-antigen polymerase 3241552 5159556 Acry_2960 Acidiphilium cryptum JF-5 O-antigen polymerase YP_001236069.1 3240242 D 349163 CDS YP_001236070.1 148261943 5160329 3241549..3241761 1 NC_009484.1 hypothetical protein 3241761 5160329 Acry_2961 Acidiphilium cryptum JF-5 hypothetical protein YP_001236070.1 3241549 D 349163 CDS YP_001236071.1 148261944 5160330 3241761..3242990 1 NC_009484.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3242990 5160330 Acry_2962 Acidiphilium cryptum JF-5 group 1 glycosyl transferase YP_001236071.1 3241761 D 349163 CDS YP_001236072.1 148261945 5160661 3243529..3244170 1 NC_009484.1 PFAM: polysaccharide export protein; polysaccharide export protein 3244170 5160661 Acry_2963 Acidiphilium cryptum JF-5 polysaccharide export protein YP_001236072.1 3243529 D 349163 CDS YP_001236073.1 148261946 5159819 3244178..3245659 1 NC_009484.1 PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 3245659 5159819 Acry_2964 Acidiphilium cryptum JF-5 lipopolysaccharide biosynthesis protein YP_001236073.1 3244178 D 349163 CDS YP_001236074.1 148261947 5159820 3245656..3246585 1 NC_009484.1 chromosome partitioning ATPase 3246585 5159820 Acry_2965 Acidiphilium cryptum JF-5 chromosome partitioning ATPase YP_001236074.1 3245656 D 349163 CDS YP_001236075.1 148261948 5160310 3246629..3248314 1 NC_009484.1 hypothetical protein 3248314 5160310 Acry_2966 Acidiphilium cryptum JF-5 hypothetical protein YP_001236075.1 3246629 D 349163 CDS YP_001236076.1 148261949 5160311 3248317..3249243 1 NC_009484.1 SMART: AAA ATPase; ATPase AAA 3249243 5160311 Acry_2967 Acidiphilium cryptum JF-5 ATPase AAA YP_001236076.1 3248317 D 349163 CDS YP_001236077.1 148261950 5160325 3249240..3250094 1 NC_009484.1 PFAM: polysaccharide deacetylase; polysaccharide deacetylase 3250094 5160325 Acry_2968 Acidiphilium cryptum JF-5 polysaccharide deacetylase YP_001236077.1 3249240 D 349163 CDS YP_001236078.1 148261951 5160366 3250096..3251136 1 NC_009484.1 hypothetical protein 3251136 5160366 Acry_2969 Acidiphilium cryptum JF-5 hypothetical protein YP_001236078.1 3250096 D 349163 CDS YP_001236079.1 148261952 5160367 3251143..3252327 1 NC_009484.1 glycosyltransferase-like protein 3252327 5160367 Acry_2970 Acidiphilium cryptum JF-5 glycosyltransferase-like protein YP_001236079.1 3251143 D 349163 CDS YP_001236080.1 148261953 5160443 3252324..3253781 1 NC_009484.1 TIGRFAM: eight transmembrane protein EpsH; eight transmembrane protein EpsH 3253781 5160443 Acry_2971 Acidiphilium cryptum JF-5 eight transmembrane protein EpsH YP_001236080.1 3252324 D 349163 CDS YP_001236081.1 148261954 5160444 3253900..3254274 1 NC_009484.1 hypothetical protein 3254274 5160444 Acry_2972 Acidiphilium cryptum JF-5 hypothetical protein YP_001236081.1 3253900 D 349163 CDS YP_001236082.1 148261955 5160456 3254420..3254782 1 NC_009484.1 hypothetical protein 3254782 5160456 Acry_2973 Acidiphilium cryptum JF-5 hypothetical protein YP_001236082.1 3254420 D 349163 CDS YP_001236083.1 148261956 5160383 3255158..3255616 1 NC_009484.1 PFAM: Cupin 2, conserved barrel domain protein; cupin 3255616 5160383 Acry_2974 Acidiphilium cryptum JF-5 cupin YP_001236083.1 3255158 D 349163 CDS YP_001236084.1 148261957 5160384 3255765..3257648 1 NC_009484.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 3257648 5160384 Acry_2975 Acidiphilium cryptum JF-5 Fis family GAF modulated sigma54 specific transcriptional regulator YP_001236084.1 3255765 D 349163 CDS YP_001236085.1 148261958 5160358 3257787..3258863 1 NC_009484.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3258863 5160358 Acry_2976 Acidiphilium cryptum JF-5 alcohol dehydrogenase YP_001236085.1 3257787 D 349163 CDS YP_001236086.1 148261959 5160359 3258897..3260720 1 NC_009484.1 flavoprotein involved in K+ transport-like protein 3260720 5160359 Acry_2977 Acidiphilium cryptum JF-5 flavoprotein involved in K+ transport-like protein YP_001236086.1 3258897 D 349163 CDS YP_001236087.1 148261960 5160502 complement(3260876..3261472) 1 NC_009484.1 PFAM: TadE family protein; TadE family protein 3261472 5160502 Acry_2978 Acidiphilium cryptum JF-5 TadE family protein YP_001236087.1 3260876 R 349163 CDS YP_001236088.1 148261961 5160332 complement(3261459..3262016) 1 NC_009484.1 PFAM: TadE family protein; TadE family protein 3262016 5160332 Acry_2979 Acidiphilium cryptum JF-5 TadE family protein YP_001236088.1 3261459 R 349163 CDS YP_001236089.1 148261962 5160333 complement(3262029..3263324) 1 NC_009484.1 hypothetical protein 3263324 5160333 Acry_2980 Acidiphilium cryptum JF-5 hypothetical protein YP_001236089.1 3262029 R 349163 CDS YP_001236090.1 148261963 5160682 complement(3263412..3263726) 1 NC_009484.1 TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; L-rhamnose 1-epimerase 3263726 5160682 Acry_2981 Acidiphilium cryptum JF-5 L-rhamnose 1-epimerase YP_001236090.1 3263412 R 349163 CDS YP_001236091.1 148261964 5160683 complement(3263746..3264717) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 3264717 5160683 Acry_2982 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001236091.1 3263746 R 349163 CDS YP_001236092.1 148261965 5159754 complement(3264717..3265775) 1 NC_009484.1 PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 3265775 5159754 Acry_2983 Acidiphilium cryptum JF-5 monosaccharide-transporting ATPase YP_001236092.1 3264717 R 349163 CDS YP_001236093.1 148261966 5160515 complement(3265795..3267324) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3267324 5160515 Acry_2984 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236093.1 3265795 R 349163 CDS YP_001236094.1 148261967 5160516 complement(3267332..3268342) 1 NC_009484.1 ABC-type sugar transport system periplasmic component-like protein 3268342 5160516 Acry_2985 Acidiphilium cryptum JF-5 ABC-type sugar transport system periplasmic component-like protein YP_001236094.1 3267332 R 349163 CDS YP_001236095.1 148261968 5160693 3268594..3269376 1 NC_009484.1 PFAM: regulatory protein, DeoR; DeoR family transcriptional regulator 3269376 5160693 Acry_2986 Acidiphilium cryptum JF-5 DeoR family transcriptional regulator YP_001236095.1 3268594 D 349163 CDS YP_001236096.1 148261969 5160694 3269403..3270587 1 NC_009484.1 TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; L-rhamnose isomerase 3270587 5160694 Acry_2987 Acidiphilium cryptum JF-5 L-rhamnose isomerase YP_001236096.1 3269403 D 349163 CDS YP_001236097.1 148261970 5160507 3270599..3272701 1 NC_009484.1 TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 3272701 5160507 Acry_2988 Acidiphilium cryptum JF-5 short chain dehydrogenase YP_001236097.1 3270599 D 349163 CDS YP_001236098.1 148261971 5160370 3272691..3274112 1 NC_009484.1 PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 3274112 5160370 Acry_2989 Acidiphilium cryptum JF-5 carbohydrate kinase YP_001236098.1 3272691 D 349163 CDS YP_001236099.1 148261972 5160371 complement(3274128..3276023) 1 NC_009484.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 3276023 5160371 Acry_2990 Acidiphilium cryptum JF-5 methyl-accepting chemotaxis sensory transducer YP_001236099.1 3274128 R 349163 CDS YP_001236100.1 148261973 5160758 3276180..3276740 1 NC_009484.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3276740 5160758 Acry_2991 Acidiphilium cryptum JF-5 cold-shock DNA-binding domain-containing protein YP_001236100.1 3276180 D 349163 CDS YP_001236101.1 148261974 5160759 3276800..3277720 1 NC_009484.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; chaperone DnaJ domain-containing protein 3277720 5160759 Acry_2992 Acidiphilium cryptum JF-5 chaperone DnaJ domain-containing protein YP_001236101.1 3276800 D 349163 CDS YP_001236102.1 148261975 5160508 3277717..3278067 1 NC_009484.1 hypothetical protein 3278067 5160508 Acry_2993 Acidiphilium cryptum JF-5 hypothetical protein YP_001236102.1 3277717 D 349163 CDS YP_001236103.1 148261976 5160724 complement(3278043..3278762) 1 NC_009484.1 PFAM: oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase 3278762 5160724 Acry_2994 Acidiphilium cryptum JF-5 molybdopterin binding oxidoreductase YP_001236103.1 3278043 R 349163 CDS YP_001236104.1 148261977 5160725 complement(3278768..3279400) 1 NC_009484.1 thiosulfate reductase cytochrome B subunit (membrane anchoring protein)-like protein 3279400 5160725 Acry_2995 Acidiphilium cryptum JF-5 thiosulfate reductase cytochrome B subunit (membrane anchoring protein)-like protein YP_001236104.1 3278768 R 349163 CDS YP_001236105.1 148261978 5160255 3279595..3279837 1 NC_009484.1 hypothetical protein 3279837 5160255 Acry_2996 Acidiphilium cryptum JF-5 hypothetical protein YP_001236105.1 3279595 D 349163 CDS YP_001236106.1 148261979 5160256 3279973..3280629 1 NC_009484.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 3280629 5160256 Acry_2997 Acidiphilium cryptum JF-5 alkyl hydroperoxide reductase YP_001236106.1 3279973 D 349163 CDS YP_001236107.1 148261980 5160713 3280635..3281504 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3281504 5160713 Acry_2998 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001236107.1 3280635 D 349163 CDS YP_001236108.1 148261981 5160463 3281589..3282179 1 NC_009484.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 3282179 5160463 Acry_2999 Acidiphilium cryptum JF-5 peroxidase-like protein YP_001236108.1 3281589 D 349163 CDS YP_001236109.1 148261982 5160464 complement(3282184..3283254) 1 NC_009484.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 3283254 5160464 Acry_3000 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236109.1 3282184 R 349163 CDS YP_001236110.1 148261983 5160729 complement(3283254..3284090) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3284090 5160729 Acry_3001 Acidiphilium cryptum JF-5 binding-protein-dependent transport systems inner membrane component YP_001236110.1 3283254 R 349163 CDS YP_001236111.1 148261984 5160730 complement(3284087..3284965) 1 NC_009484.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3284965 5160730 Acry_3002 Acidiphilium cryptum JF-5 binding-protein-dependent transport system inner membrane protein YP_001236111.1 3284087 R 349163 CDS YP_001236112.1 148261985 5160915 complement(3284978..3286306) 1 NC_009484.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 3286306 5160915 Acry_3003 Acidiphilium cryptum JF-5 extracellular solute-binding protein YP_001236112.1 3284978 R 349163 CDS YP_001236113.1 148261986 5160842 3286492..3287664 1 NC_009484.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; Ndr family protein; 3-oxoadipate enol-lactonase 3287664 5160842 Acry_3004 Acidiphilium cryptum JF-5 3-oxoadipate enol-lactonase YP_001236113.1 3286492 D 349163 CDS YP_001236114.1 148261987 5160843 complement(3287698..3289980) 1 NC_009484.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 3289980 5160843 Acry_3005 Acidiphilium cryptum JF-5 molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001236114.1 3287698 R 349163 CDS YP_001236115.1 148261988 5160845 complement(3289977..3290513) 1 NC_009484.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3290513 5160845 Acry_3006 Acidiphilium cryptum JF-5 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001236115.1 3289977 R 349163 CDS YP_001236116.1 148261989 5160846 complement(3290582..3291130) 1 NC_009484.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 3291130 5160846 Acry_3007 Acidiphilium cryptum JF-5 MarR family transcriptional regulator YP_001236116.1 3290582 R 349163 CDS YP_001236117.1 148261990 5160726 3291377..3291886 1 NC_009484.1 TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; L-2,4-diaminobutyric acid acetyltransferase 3291886 5160726 Acry_3008 Acidiphilium cryptum JF-5 L-2,4-diaminobutyric acid acetyltransferase YP_001236117.1 3291377 D 349163 CDS YP_001236118.1 148261991 5160420 3291883..3293187 1 NC_009484.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 3293187 5160420 Acry_3009 Acidiphilium cryptum JF-5 diaminobutyrate--2-oxoglutarate aminotransferase YP_001236118.1 3291883 D 349163 CDS YP_001236119.1 148261992 5160421 3293219..3293617 1 NC_009484.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 3293617 ectC 5160421 ectC Acidiphilium cryptum JF-5 L-ectoine synthase YP_001236119.1 3293219 D 349163 CDS YP_001236120.1 148261993 5160719 3293658..3294578 1 NC_009484.1 TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; ectoine hydroxylase 3294578 5160719 Acry_3011 Acidiphilium cryptum JF-5 ectoine hydroxylase YP_001236120.1 3293658 D 349163 CDS YP_001236121.1 148261994 5160720 3294575..3296041 1 NC_009484.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 3296041 5160720 Acry_3012 Acidiphilium cryptum JF-5 aspartate kinase YP_001236121.1 3294575 D 349163 CDS YP_001236122.1 148261995 5160765 3296279..3297508 1 NC_009484.1 PFAM: major facilitator superfamily MFS_1; major facilitator transporter 3297508 5160765 Acry_3013 Acidiphilium cryptum JF-5 major facilitator transporter YP_001236122.1 3296279 D 349163 CDS YP_001236123.1 148261996 5160768 complement(3297519..3298124) 1 NC_009484.1 hypothetical protein 3298124 5160768 Acry_3014 Acidiphilium cryptum JF-5 hypothetical protein YP_001236123.1 3297519 R 349163 CDS YP_001236124.1 148261997 5160769 complement(3298121..3299110) 1 NC_009484.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 3299110 5160769 Acry_3015 Acidiphilium cryptum JF-5 hypothetical protein YP_001236124.1 3298121 R 349163 CDS YP_001236125.1 148261998 5160308 complement(3299133..3299882) 1 NC_009484.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3299882 5160308 Acry_3016 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236125.1 3299133 R 349163 CDS YP_001236126.1 148261999 5160309 complement(3299879..3300967) 1 NC_009484.1 PFAM: protein of unknown function DUF140; hypothetical protein 3300967 5160309 Acry_3017 Acidiphilium cryptum JF-5 hypothetical protein YP_001236126.1 3299879 R 349163 CDS YP_001236127.1 148262000 5160734 complement(3300964..3301602) 1 NC_009484.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 3301602 5160734 Acry_3018 Acidiphilium cryptum JF-5 integral membrane protein TerC YP_001236127.1 3300964 R 349163 CDS YP_001236128.1 148262001 5162330 3301674..3303011 1 NC_009484.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3303011 5162330 Acry_3019 Acidiphilium cryptum JF-5 adenylosuccinate lyase YP_001236128.1 3301674 D 349163 CDS YP_001236129.1 148262002 5162331 3303025..3303744 1 NC_009484.1 PFAM: protein of unknown function DUF833; hypothetical protein 3303744 5162331 Acry_3020 Acidiphilium cryptum JF-5 hypothetical protein YP_001236129.1 3303025 D 349163 CDS YP_001236130.1 148262003 5160676 complement(3303811..3305304) 1 NC_009484.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 3305304 5160676 Acry_3021 Acidiphilium cryptum JF-5 methylmalonate-semialdehyde dehydrogenase YP_001236130.1 3303811 R 349163 CDS YP_001236131.1 148262004 5160677 3305334..3306662 1 NC_009484.1 TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 3306662 5160677 Acry_3022 Acidiphilium cryptum JF-5 amidase YP_001236131.1 3305334 D 349163 CDS YP_001236132.1 148262005 5160964 3306754..3307359 1 NC_009484.1 hypothetical protein 3307359 5160964 Acry_3023 Acidiphilium cryptum JF-5 hypothetical protein YP_001236132.1 3306754 D 349163 CDS YP_001236133.1 148262006 5160696 complement(3307433..3309235) 1 NC_009484.1 flavoprotein involved in K+ transport-like protein 3309235 5160696 Acry_3024 Acidiphilium cryptum JF-5 flavoprotein involved in K+ transport-like protein YP_001236133.1 3307433 R 349163 CDS YP_001236134.1 148262007 5160697 3309401..3309889 1 NC_009484.1 hypothetical protein 3309889 5160697 Acry_3025 Acidiphilium cryptum JF-5 hypothetical protein YP_001236134.1 3309401 D 349163 CDS YP_001236135.1 148262008 5160717 complement(3309961..3310794) 1 NC_009484.1 hypothetical protein 3310794 5160717 Acry_3026 Acidiphilium cryptum JF-5 hypothetical protein YP_001236135.1 3309961 R 349163 CDS YP_001236136.1 148262009 5160718 complement(3310962..3312797) 1 NC_009484.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 3312797 5160718 Acry_3027 Acidiphilium cryptum JF-5 heavy metal translocating P-type ATPase YP_001236136.1 3310962 R 349163 CDS YP_001236137.1 148262010 5160197 3312958..3313215 1 NC_009484.1 hypothetical protein 3313215 5160197 Acry_3028 Acidiphilium cryptum JF-5 hypothetical protein YP_001236137.1 3312958 D 349163 CDS YP_001236138.1 148262011 5161044 3313220..3313996 1 NC_009484.1 enoyl-(acyl-carrier-protein)-like protein 3313996 5161044 Acry_3029 Acidiphilium cryptum JF-5 enoyl-(acyl-carrier-protein)-like protein YP_001236138.1 3313220 D 349163 CDS YP_001236139.1 148262012 5161045 3314027..3315847 1 NC_009484.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 3315847 5161045 Acry_3030 Acidiphilium cryptum JF-5 poly-beta-hydroxybutyrate polymerase domain-containing protein YP_001236139.1 3314027 D 349163 CDS YP_001236140.1 148262013 5160927 3315860..3317275 1 NC_009484.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3317275 5160927 Acry_3031 Acidiphilium cryptum JF-5 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase YP_001236140.1 3315860 D 349163 CDS YP_001236141.1 148262014 5160928 3317290..3317640 1 NC_009484.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3317640 5160928 Acry_3032 Acidiphilium cryptum JF-5 alkylhydroperoxidase YP_001236141.1 3317290 D 349163 CDS YP_001236142.1 148262015 5160975 3317713..3318216 1 NC_009484.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV 3318216 5160975 Acry_3033 Acidiphilium cryptum JF-5 peptidase A24A, prepilin type IV YP_001236142.1 3317713 D 349163 CDS YP_001236143.1 148262016 5160957 3318339..3319685 1 NC_009484.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 3319685 5160957 Acry_3034 Acidiphilium cryptum JF-5 cytosine/purines uracil thiamine allantoin permease YP_001236143.1 3318339 D 349163 CDS YP_001236144.1 148262017 5160958 3319745..3319954 1 NC_009484.1 hypothetical protein 3319954 5160958 Acry_3035 Acidiphilium cryptum JF-5 hypothetical protein YP_001236144.1 3319745 D 349163 CDS YP_001236145.1 148262018 5160967 complement(3319929..3320414) 1 NC_009484.1 hypothetical protein 3320414 5160967 Acry_3036 Acidiphilium cryptum JF-5 hypothetical protein YP_001236145.1 3319929 R 349163 CDS YP_001236146.1 148262019 5162560 3321846..3322406 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3322406 5162560 Acry_3038 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001236146.1 3321846 D 349163 CDS YP_001236147.1 148262020 5161046 complement(3322394..3323173) 1 NC_009484.1 PFAM: class II aldolase/adducin family protein; aldolase II superfamily protein 3323173 5161046 Acry_3039 Acidiphilium cryptum JF-5 aldolase II superfamily protein YP_001236147.1 3322394 R 349163 CDS YP_001236148.1 148262021 5162299 complement(3323233..3323826) 1 NC_009484.1 S-isoprenylcysteine methyltransferase-like protein 3323826 5162299 Acry_3040 Acidiphilium cryptum JF-5 S-isoprenylcysteine methyltransferase-like protein YP_001236148.1 3323233 R 349163 CDS YP_001236149.1 148262022 5162300 3323942..3325186 1 NC_009484.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding oxidoreductase 3325186 5162300 Acry_3041 Acidiphilium cryptum JF-5 molybdopterin binding oxidoreductase YP_001236149.1 3323942 D 349163 CDS YP_001236150.1 148262023 5161027 3325170..3325949 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 3325949 5161027 Acry_3042 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001236150.1 3325170 D 349163 CDS YP_001236151.1 148262024 5161028 3325960..3326304 1 NC_009484.1 PFAM: cytochrome c, class I; cytochrome c, class I 3326304 5161028 Acry_3043 Acidiphilium cryptum JF-5 cytochrome c, class I YP_001236151.1 3325960 D 349163 CDS YP_001236152.1 148262025 5161029 3326352..3326846 1 NC_009484.1 secreted protein-like protein 3326846 5161029 Acry_3044 Acidiphilium cryptum JF-5 secreted protein-like protein YP_001236152.1 3326352 D 349163 CDS YP_001236153.1 148262026 5161014 3326855..3327169 1 NC_009484.1 hypothetical protein 3327169 5161014 Acry_3045 Acidiphilium cryptum JF-5 hypothetical protein YP_001236153.1 3326855 D 349163 CDS YP_001236154.1 148262027 5161015 3327173..3328063 1 NC_009484.1 hypothetical protein 3328063 5161015 Acry_3046 Acidiphilium cryptum JF-5 hypothetical protein YP_001236154.1 3327173 D 349163 CDS YP_001236155.1 148262028 5160954 3328060..3328362 1 NC_009484.1 hypothetical protein 3328362 5160954 Acry_3047 Acidiphilium cryptum JF-5 hypothetical protein YP_001236155.1 3328060 D 349163 CDS YP_001236156.1 148262029 5160955 3328387..3330123 1 NC_009484.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; 5'-nucleotidase domain-containing protein 3330123 5160955 Acry_3048 Acidiphilium cryptum JF-5 5'-nucleotidase domain-containing protein YP_001236156.1 3328387 D 349163 CDS YP_001236157.1 148262030 5160868 3330120..3330557 1 NC_009484.1 hypothetical protein 3330557 5160868 Acry_3049 Acidiphilium cryptum JF-5 hypothetical protein YP_001236157.1 3330120 D 349163 CDS YP_001236158.1 148262031 5160825 3330657..3331442 1 NC_009484.1 PFAM: protein of unknown function DUF81; hypothetical protein 3331442 5160825 Acry_3050 Acidiphilium cryptum JF-5 hypothetical protein YP_001236158.1 3330657 D 349163 CDS YP_001236159.1 148262032 5160826 3331494..3332993 1 NC_009484.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; hypothetical protein 3332993 5160826 Acry_3051 Acidiphilium cryptum JF-5 hypothetical protein YP_001236159.1 3331494 D 349163 CDS YP_001236160.1 148262033 5161009 complement(3333135..3333506) 1 NC_009484.1 hypothetical protein 3333506 5161009 Acry_3052 Acidiphilium cryptum JF-5 hypothetical protein YP_001236160.1 3333135 R 349163 CDS YP_001236161.1 148262034 5161010 complement(3333561..3333950) 1 NC_009484.1 PFAM: protein of unknown function DUF302; hypothetical protein 3333950 5161010 Acry_3053 Acidiphilium cryptum JF-5 hypothetical protein YP_001236161.1 3333561 R 349163 CDS YP_001236162.1 148262035 5161087 complement(3334096..3336072) 1 NC_009484.1 PFAM: phosphoesterase; phosphoesterase 3336072 5161087 Acry_3054 Acidiphilium cryptum JF-5 phosphoesterase YP_001236162.1 3334096 R 349163 CDS YP_001236163.1 148262036 5161016 complement(3336222..3337400) 1 NC_009484.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 3337400 5161016 Acry_3055 Acidiphilium cryptum JF-5 acetate kinase YP_001236163.1 3336222 R 349163 CDS YP_001236164.1 148262037 5161017 complement(3337435..3338367) 1 NC_009484.1 PFAM: Forkhead-associated protein; putative adenylate/guanylate cyclase 3338367 5161017 Acry_3056 Acidiphilium cryptum JF-5 putative adenylate/guanylate cyclase YP_001236164.1 3337435 R 349163 CDS YP_001236165.1 148262038 5161116 complement(3338527..3339960) 1 NC_009484.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase, type I 3339960 5161116 Acry_3057 Acidiphilium cryptum JF-5 glutamine synthetase, type I YP_001236165.1 3338527 R 349163 CDS YP_001236166.1 148262039 5161117 complement(3340043..3340381) 1 NC_009484.1 PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3340381 5161117 Acry_3058 Acidiphilium cryptum JF-5 nitrogen regulatory protein P-II YP_001236166.1 3340043 R 349163 CDS YP_001236167.1 148262040 5159976 3340645..3341838 1 NC_009484.1 PFAM: aminotransferase, class V; aminotransferase, class I and II; hypothetical protein 3341838 5159976 Acry_3059 Acidiphilium cryptum JF-5 hypothetical protein YP_001236167.1 3340645 D 349163 CDS YP_001236168.1 148262041 5160379 3341876..3342730 1 NC_009484.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3342730 5160379 Acry_3060 Acidiphilium cryptum JF-5 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001236168.1 3341876 D 349163 CDS YP_001236169.1 148262042 5160380 3342727..3343488 1 NC_009484.1 PFAM: ATP-NAD/AcoX kinase; NAD(+) kinase 3343488 5160380 Acry_3061 Acidiphilium cryptum JF-5 NAD(+) kinase YP_001236169.1 3342727 D 349163 CDS YP_001236170.1 148262043 5161152 complement(3343997..3344524) 1 NC_009484.1 PFAM: protein of unknown function UPF0157; hypothetical protein 3344524 5161152 Acry_3062 Acidiphilium cryptum JF-5 hypothetical protein YP_001236170.1 3343997 R 349163 CDS YP_001236171.1 148262044 5161153 complement(3344546..3345529) 1 NC_009484.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 3345529 5161153 Acry_3063 Acidiphilium cryptum JF-5 malate dehydrogenase YP_001236171.1 3344546 R 349163 CDS YP_001236172.1 148262045 5161171 3345626..3346213 1 NC_009484.1 hypothetical protein 3346213 5161171 Acry_3064 Acidiphilium cryptum JF-5 hypothetical protein YP_001236172.1 3345626 D 349163 CDS YP_001236173.1 148262046 5161133 3346262..3346567 1 NC_009484.1 hypothetical protein 3346567 5161133 Acry_3065 Acidiphilium cryptum JF-5 hypothetical protein YP_001236173.1 3346262 D 349163 CDS YP_001236174.1 148262047 5161134 complement(3346606..3347547) 1 NC_009484.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3347547 5161134 Acry_3066 Acidiphilium cryptum JF-5 LysR family transcriptional regulator YP_001236174.1 3346606 R 349163 CDS YP_001236175.1 148262048 5162561 complement(3348345..3348830) 1 NC_009484.1 PFAM: protein of unknown function DUF796; hypothetical protein 3348830 5162561 Acry_3068 Acidiphilium cryptum JF-5 hypothetical protein YP_001236175.1 3348345 R 349163 CDS YP_001236176.1 148262049 5162360 complement(3348860..3351508) 1 NC_009484.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 3351508 5162360 Acry_3069 Acidiphilium cryptum JF-5 ATPase YP_001236176.1 3348860 R 349163 CDS YP_001236177.1 148262050 5159954 3351662..3352780 1 NC_009484.1 PFAM: ImpA domain protein; ImpA domain-containing protein 3352780 5159954 Acry_3070 Acidiphilium cryptum JF-5 ImpA domain-containing protein YP_001236177.1 3351662 D 349163 CDS YP_001236178.1 148262051 5161035 complement(3352802..3354295) 1 NC_009484.1 PFAM: protein of unknown function DUF877; hypothetical protein 3354295 5161035 Acry_3071 Acidiphilium cryptum JF-5 hypothetical protein YP_001236178.1 3352802 R 349163 CDS YP_001236179.1 148262052 5161036 complement(3354316..3355809) 1 NC_009484.1 PFAM: protein of unknown function DUF877; hypothetical protein 3355809 5161036 Acry_3072 Acidiphilium cryptum JF-5 hypothetical protein YP_001236179.1 3354316 R 349163 CDS YP_001236180.1 148262053 5160932 complement(3355813..3356319) 1 NC_009484.1 PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 3356319 5160932 Acry_3073 Acidiphilium cryptum JF-5 hypothetical protein YP_001236180.1 3355813 R 349163 CDS YP_001236181.1 148262054 5160933 3356647..3357462 1 NC_009484.1 PFAM: virulence protein, SciE type; virulence protein, SciE type 3357462 5160933 Acry_3074 Acidiphilium cryptum JF-5 virulence protein, SciE type YP_001236181.1 3356647 D 349163 CDS YP_001236182.1 148262055 5160998 3357462..3357983 1 NC_009484.1 PFAM: GPW/gp25 family protein; GPW/gp25 family protein 3357983 5160998 Acry_3075 Acidiphilium cryptum JF-5 GPW/gp25 family protein YP_001236182.1 3357462 D 349163 CDS YP_001236183.1 148262056 5161097 3357976..3359793 1 NC_009484.1 PFAM: protein of unknown function DUF879; hypothetical protein 3359793 5161097 Acry_3076 Acidiphilium cryptum JF-5 hypothetical protein YP_001236183.1 3357976 D 349163 CDS YP_001236184.1 148262057 5161098 3359790..3360899 1 NC_009484.1 PFAM: protein of unknown function DUF1305; hypothetical protein 3360899 5161098 Acry_3077 Acidiphilium cryptum JF-5 hypothetical protein YP_001236184.1 3359790 D 349163 CDS YP_001236185.1 148262058 5161165 3360896..3362434 1 NC_009484.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3362434 5161165 Acry_3078 Acidiphilium cryptum JF-5 type 12 methyltransferase YP_001236185.1 3360896 D 349163 CDS YP_001236186.1 148262059 5161166 complement(3362448..3363557) 1 NC_009484.1 hypothetical protein 3363557 5161166 Acry_3079 Acidiphilium cryptum JF-5 hypothetical protein YP_001236186.1 3362448 R 349163 CDS YP_001236187.1 148262060 5161107 complement(3363554..3364147) 1 NC_009484.1 hypothetical protein 3364147 5161107 Acry_3080 Acidiphilium cryptum JF-5 hypothetical protein YP_001236187.1 3363554 R 349163 CDS YP_001236188.1 148262061 5161102 complement(3364397..3365095) 1 NC_009484.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3365095 5161102 Acry_3081 Acidiphilium cryptum JF-5 phospholipid/glycerol acyltransferase YP_001236188.1 3364397 R 349163 CDS YP_001236189.1 148262062 5161103 complement(3365095..3365751) 1 NC_009484.1 PFAM: protein of unknown function DUF218; hypothetical protein 3365751 5161103 Acry_3082 Acidiphilium cryptum JF-5 hypothetical protein YP_001236189.1 3365095 R 349163 CDS YP_001236190.1 148262063 5160879 complement(3365748..3366674) 1 NC_009484.1 PFAM: protein of unknown function DUF214; hypothetical protein 3366674 5160879 Acry_3083 Acidiphilium cryptum JF-5 hypothetical protein YP_001236190.1 3365748 R 349163 CDS YP_001236191.1 148262064 5160880 complement(3366687..3367358) 1 NC_009484.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 3367358 5160880 Acry_3084 Acidiphilium cryptum JF-5 cell division ATP-binding protein FtsE YP_001236191.1 3366687 R 349163 CDS YP_001236192.1 148262065 5162282 3367420..3367956 1 NC_009484.1 TIGRFAM: MJ0042 family finger-like protein; Zinc finger-domain-containing protein 3367956 5162282 Acry_3085 Acidiphilium cryptum JF-5 Zinc finger-domain-containing protein YP_001236192.1 3367420 D 349163 CDS YP_001236193.1 148262066 5161176 3368005..3369057 1 NC_009484.1 PFAM: peptidase M19, renal dipeptidase; membrane dipeptidase 3369057 5161176 Acry_3086 Acidiphilium cryptum JF-5 membrane dipeptidase YP_001236193.1 3368005 D 349163 CDS YP_001236194.1 148262067 5161177 complement(3369104..3370924) 1 NC_009484.1 molecular chaperone; heat shock protein 90 3370924 5161177 Acry_3087 Acidiphilium cryptum JF-5 heat shock protein 90 YP_001236194.1 3369104 R 349163 CDS YP_001236195.1 148262068 5161205 3371062..3373575 1 NC_009484.1 PFAM: helicase domain protein; helicase domain-containing protein 3373575 5161205 Acry_3088 Acidiphilium cryptum JF-5 helicase domain-containing protein YP_001236195.1 3371062 D 349163 CDS YP_001236196.1 148262069 5161206 3373562..3373858 1 NC_009484.1 PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3373858 5161206 Acry_3089 Acidiphilium cryptum JF-5 RNA-binding S4 domain-containing protein YP_001236196.1 3373562 D 349163 CDS YP_001236197.1 148262070 5161294 3373936..3374268 1 NC_009484.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3374268 5161294 Acry_3090 Acidiphilium cryptum JF-5 4Fe-4S ferredoxin YP_001236197.1 3373936 D 349163 CDS YP_001236198.1 148262071 5160856 3374391..3375191 1 NC_009484.1 PFAM: transcription factor CarD; CarD family transcriptional regulator 3375191 5160856 Acry_3091 Acidiphilium cryptum JF-5 CarD family transcriptional regulator YP_001236198.1 3374391 D 349163 CDS YP_001236199.1 148262072 5160857 3375393..3376694 1 NC_009484.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter 3376694 5160857 Acry_3092 Acidiphilium cryptum JF-5 Mn2+/Fe2+ transporter YP_001236199.1 3375393 D 349163 CDS YP_001236200.1 148262073 5161241 complement(3376691..3377428) 1 NC_009484.1 PFAM: ABC transporter related; ABC transporter-like protein 3377428 5161241 Acry_3093 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236200.1 3376691 R 349163 CDS YP_001236201.1 148262074 5161242 complement(3377421..3379403) 1 NC_009484.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3379403 5161242 Acry_3094 Acidiphilium cryptum JF-5 ABC transporter-like protein YP_001236201.1 3377421 R 349163 CDS YP_001236202.1 148262075 5161191 complement(3379410..3380339) 1 NC_009484.1 PFAM: inner-membrane translocator; inner-membrane translocator 3380339 5161191 Acry_3095 Acidiphilium cryptum JF-5 inner-membrane translocator YP_001236202.1 3379410 R 349163 CDS YP_001236203.1 148262076 5161318 complement(3380350..3381585) 1 NC_009484.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 3381585 5161318 Acry_3096 Acidiphilium cryptum JF-5 extracellular ligand-binding receptor YP_001236203.1 3380350 R 349163 CDS YP_001236204.1 148262077 5161319 complement(3381873..3383888) 1 NC_009484.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug 3383888 5161319 Acry_3097 Acidiphilium cryptum JF-5 TonB-dependent receptor, plug YP_001236204.1 3381873 R 349163 CDS YP_001236205.1 148262078 5161149 complement(3384238..3384921) 1 NC_009484.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 3384921 5161149 Acry_3098 Acidiphilium cryptum JF-5 haloacid dehalogenase YP_001236205.1 3384238 R 349163 CDS YP_001236206.1 148262079 5161150 complement(3384936..3385634) 1 NC_009484.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 3385634 5161150 Acry_3099 Acidiphilium cryptum JF-5 glutathione S-transferase domain-containing protein YP_001236206.1 3384936 R 349163 CDS YP_001236207.1 148262080 5161137 complement(3385627..3385890) 1 NC_009484.1 hypothetical protein 3385890 5161137 Acry_3100 Acidiphilium cryptum JF-5 hypothetical protein YP_001236207.1 3385627 R 349163 CDS YP_001236208.1 148262081 5161433 complement(3385887..3386525) 1 NC_009484.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3386525 5161433 Acry_3101 Acidiphilium cryptum JF-5 TetR family transcriptional regulator YP_001236208.1 3385887 R 349163 CDS YP_001236209.1 148262082 5161434 3386588..3387253 1 NC_009484.1 protein-disulfide isomerase-like protein 3387253 5161434 Acry_3102 Acidiphilium cryptum JF-5 protein-disulfide isomerase-like protein YP_001236209.1 3386588 D 349163 CDS YP_001236210.1 148262083 5161292 3387347..3388531 1 NC_009484.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase 3388531 5161292 Acry_3103 Acidiphilium cryptum JF-5 O-succinylhomoserine sulfhydrylase YP_001236210.1 3387347 D 349163 CDS YP_001236211.1 148262084 5161293 3388749..3389021 1 NC_009484.1 PFAM: ribosomal protein S20; 30S ribosomal protein S20 3389021 5161293 Acry_3104 Acidiphilium cryptum JF-5 30S ribosomal protein S20 YP_001236211.1 3388749 D 349163 CDS