-- dump date 20111121_010208 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_973999.1 121582467 4670380 complement(64..324) 1 NC_008765.1 KEGG: rme:Rmet_4020 hypothetical protein; hypothetical protein 324 4670380 Ajs_4163 Acidovorax sp. JS42 hypothetical protein YP_973999.1 64 R 232721 CDS YP_974000.1 121582468 4670373 complement(332..1057) 1 NC_008765.1 PFAM: peptidase M48, Ste24p; KEGG: dar:Daro_0023 peptidase M48, Ste24p; peptidase M48, Ste24p 1057 4670373 Ajs_4164 Acidovorax sp. JS42 peptidase M48, Ste24p YP_974000.1 332 R 232721 CDS YP_974001.1 121582469 4670425 complement(1133..1516) 1 NC_008765.1 hypothetical protein 1516 4670425 Ajs_4165 Acidovorax sp. JS42 hypothetical protein YP_974001.1 1133 R 232721 CDS YP_974002.1 121582470 4670365 1546..1800 1 NC_008765.1 hypothetical protein 1800 4670365 Ajs_4166 Acidovorax sp. JS42 hypothetical protein YP_974002.1 1546 D 232721 CDS YP_974003.1 121582471 4670369 complement(2127..5174) 1 NC_008765.1 PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein; TraG domain-containing protein 5174 4670369 Ajs_4167 Acidovorax sp. JS42 TraG domain-containing protein YP_974003.1 2127 R 232721 CDS YP_974004.1 121582472 4670349 complement(5186..6592) 1 NC_008765.1 PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein; TraH family protein 6592 4670349 Ajs_4168 Acidovorax sp. JS42 TraH family protein YP_974004.1 5186 R 232721 CDS YP_974005.1 121582473 4670408 complement(6603..7415) 1 NC_008765.1 KEGG: dar:Daro_2662 hypothetical protein; hypothetical protein 7415 4670408 Ajs_4169 Acidovorax sp. JS42 hypothetical protein YP_974005.1 6603 R 232721 CDS YP_974006.1 121582474 4670368 complement(7420..7782) 1 NC_008765.1 KEGG: eba:ebA6631 hypothetical protein; hypothetical protein 7782 4670368 Ajs_4170 Acidovorax sp. JS42 hypothetical protein YP_974006.1 7420 R 232721 CDS YP_974007.1 121582475 4670345 complement(7779..9023) 1 NC_008765.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 9023 4670345 Ajs_4171 Acidovorax sp. JS42 conjugal transfer mating pair stabilization protein TraN YP_974007.1 7779 R 232721 CDS YP_974008.1 121582476 4670399 complement(9020..10318) 1 NC_008765.1 hypothetical protein 10318 4670399 Ajs_4172 Acidovorax sp. JS42 hypothetical protein YP_974008.1 9020 R 232721 CDS YP_974009.1 121582477 4670363 complement(10315..11091) 1 NC_008765.1 KEGG: dar:Daro_2659 hypothetical protein; hypothetical protein 11091 4670363 Ajs_4173 Acidovorax sp. JS42 hypothetical protein YP_974009.1 10315 R 232721 CDS YP_974010.1 121582478 4670362 complement(11091..12092) 1 NC_008765.1 PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein; TraU family protein 12092 4670362 Ajs_4174 Acidovorax sp. JS42 TraU family protein YP_974010.1 11091 R 232721 CDS YP_974011.1 121582479 4670371 complement(12089..12727) 1 NC_008765.1 KEGG: dar:Daro_2324 hypothetical protein; hypothetical protein 12727 4670371 Ajs_4175 Acidovorax sp. JS42 hypothetical protein YP_974011.1 12089 R 232721 CDS YP_974012.1 121582480 4670370 complement(12714..13190) 1 NC_008765.1 KEGG: eba:ebA6617 hypothetical protein; hypothetical protein 13190 4670370 Ajs_4176 Acidovorax sp. JS42 hypothetical protein YP_974012.1 12714 R 232721 CDS YP_974013.1 121582481 4670374 complement(13190..13618) 1 NC_008765.1 hypothetical protein 13618 4670374 Ajs_4177 Acidovorax sp. JS42 hypothetical protein YP_974013.1 13190 R 232721 CDS YP_974014.1 121582482 4670385 complement(13608..16232) 1 NC_008765.1 KEGG: dar:Daro_2653 hypothetical protein; hypothetical protein 16232 4670385 Ajs_4178 Acidovorax sp. JS42 hypothetical protein YP_974014.1 13608 R 232721 CDS YP_974015.1 121582483 4670350 complement(16270..16920) 1 NC_008765.1 TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6611 hypothetical protein; membrane lipoprotein lipid attachment site 16920 4670350 Ajs_4179 Acidovorax sp. JS42 membrane lipoprotein lipid attachment site YP_974015.1 16270 R 232721 CDS YP_974016.1 121582484 4670364 complement(17063..17812) 1 NC_008765.1 KEGG: rme:Rmet_6169 protein-disulfide isomerase; protein-disulfide isomerase 17812 4670364 Ajs_4180 Acidovorax sp. JS42 protein-disulfide isomerase YP_974016.1 17063 R 232721 CDS YP_974017.1 121582485 4670354 complement(17805..19154) 1 NC_008765.1 PFAM: TraB pilus assembly family protein; KEGG: dar:Daro_2650 TraB pilus assembly; TraB pilus assembly family protein 19154 4670354 Ajs_4181 Acidovorax sp. JS42 TraB pilus assembly family protein YP_974017.1 17805 R 232721 CDS YP_974018.1 121582486 4670389 complement(19147..19884) 1 NC_008765.1 KEGG: dar:Daro_2316 hypothetical protein; hypothetical protein 19884 4670389 Ajs_4182 Acidovorax sp. JS42 hypothetical protein YP_974018.1 19147 R 232721 CDS YP_974019.1 121582487 4670405 complement(19820..20413) 1 NC_008765.1 KEGG: dar:Daro_2315 plasmid-like conjugative transfer protein TraE; hypothetical protein 20413 4670405 Ajs_4183 Acidovorax sp. JS42 hypothetical protein YP_974019.1 19820 R 232721 CDS YP_974020.1 121582488 4670417 complement(20428..20721) 1 NC_008765.1 KEGG: dar:Daro_2647 TraL; hypothetical protein 20721 4670417 Ajs_4184 Acidovorax sp. JS42 hypothetical protein YP_974020.1 20428 R 232721 CDS YP_974021.1 121582489 4670414 complement(20737..21069) 1 NC_008765.1 hypothetical protein 21069 4670414 Ajs_4185 Acidovorax sp. JS42 hypothetical protein YP_974021.1 20737 R 232721 CDS YP_974022.1 121582490 4670391 complement(21164..21547) 1 NC_008765.1 hypothetical protein 21547 4670391 Ajs_4186 Acidovorax sp. JS42 hypothetical protein YP_974022.1 21164 R 232721 CDS YP_974023.1 121582491 4670348 complement(21549..22049) 1 NC_008765.1 PFAM: Lytic transglycosylase, catalytic; KEGG: rme:Rmet_6296 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 22049 4670348 Ajs_4187 Acidovorax sp. JS42 lytic transglycosylase, catalytic YP_974023.1 21549 R 232721 CDS YP_974024.1 121582492 4670387 22495..23154 1 NC_008765.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mfa:Mfla_0815 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 23154 4670387 Ajs_4188 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_974024.1 22495 D 232721 CDS YP_974025.1 121582493 4670395 complement(23123..24091) 1 NC_008765.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_00840 signal transduction histidine kinase, glucose-6-phosphate specific; integral membrane sensor signal transduction histidine kinase 24091 4670395 Ajs_4189 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_974025.1 23123 R 232721 CDS YP_974026.1 121582494 4670390 complement(24100..24375) 1 NC_008765.1 KEGG: pat:Patl_1718 hypothetical protein; hypothetical protein 24375 4670390 Ajs_4190 Acidovorax sp. JS42 hypothetical protein YP_974026.1 24100 R 232721 CDS YP_974027.1 121582495 4670421 complement(24409..25263) 1 NC_008765.1 KEGG: fal:FRAAL3938 hypothetical protein; hypothetical protein 25263 4670421 Ajs_4191 Acidovorax sp. JS42 hypothetical protein YP_974027.1 24409 R 232721 CDS YP_974028.1 121582496 4670346 complement(25708..28593) 1 NC_008765.1 KEGG: sal:Sala_2489 TrwC protein; TrwC protein 28593 4670346 Ajs_4192 Acidovorax sp. JS42 TrwC protein YP_974028.1 25708 R 232721 CDS YP_974029.1 121582497 4670386 complement(28590..29045) 1 NC_008765.1 KEGG: rso:RSc2990 probable thiol:disulfide interchange transmembrane protein; putative thiol:disulfide interchange transmembrane protein 29045 4670386 Ajs_4193 Acidovorax sp. JS42 putative thiol:disulfide interchange transmembrane protein YP_974029.1 28590 R 232721 CDS YP_974030.1 121582498 4670427 complement(29057..31054) 1 NC_008765.1 KEGG: lpn:lpg2078 TraD; hypothetical protein 31054 4670427 Ajs_4194 Acidovorax sp. JS42 hypothetical protein YP_974030.1 29057 R 232721 CDS YP_974031.1 121582499 4670358 complement(31056..31433) 1 NC_008765.1 hypothetical protein 31433 4670358 Ajs_4195 Acidovorax sp. JS42 hypothetical protein YP_974031.1 31056 R 232721 CDS YP_974032.1 121582500 4670360 31746..32066 1 NC_008765.1 hypothetical protein 32066 4670360 Ajs_4196 Acidovorax sp. JS42 hypothetical protein YP_974032.1 31746 D 232721 CDS YP_974033.1 121582501 4670353 32587..32880 1 NC_008765.1 hypothetical protein 32880 4670353 Ajs_4197 Acidovorax sp. JS42 hypothetical protein YP_974033.1 32587 D 232721 CDS YP_974034.1 121582502 4670429 complement(33517..34134) 1 NC_008765.1 PFAM: Resolvase, N-terminal domain; KEGG: son:SOA0172 site-specific recombinase, resolvase family; resolvase domain-containing protein 34134 4670429 Ajs_4198 Acidovorax sp. JS42 resolvase domain-containing protein YP_974034.1 33517 R 232721 CDS YP_974035.1 121582503 4670356 complement(34142..34378) 1 NC_008765.1 hypothetical protein 34378 4670356 Ajs_4199 Acidovorax sp. JS42 hypothetical protein YP_974035.1 34142 R 232721 CDS YP_974036.1 121582504 4670404 complement(34391..34717) 1 NC_008765.1 hypothetical protein 34717 4670404 Ajs_4200 Acidovorax sp. JS42 hypothetical protein YP_974036.1 34391 R 232721 CDS YP_974037.1 121582505 4670366 complement(34732..35061) 1 NC_008765.1 hypothetical protein 35061 4670366 Ajs_4201 Acidovorax sp. JS42 hypothetical protein YP_974037.1 34732 R 232721 CDS YP_974038.1 121582506 4670424 complement(35234..35728) 1 NC_008765.1 PFAM: DNA repair protein RadC; KEGG: xac:XAC2179 RadC family protein; DNA repair protein RadC 35728 4670424 Ajs_4202 Acidovorax sp. JS42 DNA repair protein RadC YP_974038.1 35234 R 232721 CDS YP_974039.1 121582507 4670382 complement(36284..36502) 1 NC_008765.1 KEGG: rfr:Rfer_4386 hypothetical protein; hypothetical protein 36502 4670382 Ajs_4203 Acidovorax sp. JS42 hypothetical protein YP_974039.1 36284 R 232721 CDS YP_974040.1 121582508 4670411 complement(36546..36995) 1 NC_008765.1 hypothetical protein 36995 4670411 Ajs_4204 Acidovorax sp. JS42 hypothetical protein YP_974040.1 36546 R 232721 CDS YP_974041.1 121582509 4670377 complement(37009..37476) 1 NC_008765.1 hypothetical protein 37476 4670377 Ajs_4205 Acidovorax sp. JS42 hypothetical protein YP_974041.1 37009 R 232721 CDS YP_974042.1 121582510 4670415 complement(37530..39506) 1 NC_008765.1 PFAM: Methyltransferase type 11; KEGG: eci:UTI89_P088 hypothetical protein; methyltransferase type 11 39506 4670415 Ajs_4206 Acidovorax sp. JS42 methyltransferase type 11 YP_974042.1 37530 R 232721 CDS YP_974043.1 121582511 4670416 complement(40603..40830) 1 NC_008765.1 hypothetical protein 40830 4670416 Ajs_4207 Acidovorax sp. JS42 hypothetical protein YP_974043.1 40603 R 232721 CDS YP_974044.1 121582512 4670419 complement(40939..41244) 1 NC_008765.1 KEGG: eba:p1B366 hypothetical protein; hypothetical protein 41244 4670419 Ajs_4208 Acidovorax sp. JS42 hypothetical protein YP_974044.1 40939 R 232721 CDS YP_974045.1 121582513 4670418 complement(41280..41621) 1 NC_008765.1 hypothetical protein 41621 4670418 Ajs_4209 Acidovorax sp. JS42 hypothetical protein YP_974045.1 41280 R 232721 CDS YP_974046.1 121582514 4670412 complement(41691..42515) 1 NC_008765.1 PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932; hypothetical protein 42515 4670412 Ajs_4210 Acidovorax sp. JS42 hypothetical protein YP_974046.1 41691 R 232721 CDS YP_974047.1 121582515 4670413 complement(42604..43035) 1 NC_008765.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: swo:Swol_2539 single-strand binding protein; single-strand binding protein 43035 4670413 Ajs_4211 Acidovorax sp. JS42 single-strand binding protein YP_974047.1 42604 R 232721 CDS YP_974048.1 121582516 4670351 complement(43800..44351) 1 NC_008765.1 hypothetical protein 44351 4670351 Ajs_4212 Acidovorax sp. JS42 hypothetical protein YP_974048.1 43800 R 232721 CDS YP_974049.1 121582517 4670409 complement(44370..44987) 1 NC_008765.1 KEGG: pol:Bpro_4968 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme 44987 4670409 Ajs_4213 Acidovorax sp. JS42 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme YP_974049.1 44370 R 232721 CDS YP_974050.1 121582518 4670410 complement(45009..45923) 1 NC_008765.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: pst:PSPTO_2386 C-5 cytosine-specific DNA methylase family protein; C-5 cytosine-specific DNA methylase 45923 4670410 Ajs_4214 Acidovorax sp. JS42 C-5 cytosine-specific DNA methylase YP_974050.1 45009 R 232721 CDS YP_974051.1 121582519 4670420 complement(45928..46149) 1 NC_008765.1 hypothetical protein 46149 4670420 Ajs_4215 Acidovorax sp. JS42 hypothetical protein YP_974051.1 45928 R 232721 CDS YP_974052.1 121582520 4670392 complement(46360..46860) 1 NC_008765.1 KEGG: rfr:Rfer_2821 hypothetical protein; hypothetical protein 46860 4670392 Ajs_4216 Acidovorax sp. JS42 hypothetical protein YP_974052.1 46360 R 232721 CDS YP_974053.1 121582521 4670428 complement(46857..47765) 1 NC_008765.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bcz:pE33L466_0012 possible DNA polymerase III fragment; exonuclease, RNase T and DNA polymerase III 47765 4670428 Ajs_4217 Acidovorax sp. JS42 exonuclease, RNase T and DNA polymerase III YP_974053.1 46857 R 232721 CDS YP_974054.1 121582522 4670394 complement(47762..48805) 1 NC_008765.1 KEGG: bam:Bamb_6604 hypothetical protein; hypothetical protein 48805 4670394 Ajs_4218 Acidovorax sp. JS42 hypothetical protein YP_974054.1 47762 R 232721 CDS YP_974055.1 121582523 4670352 complement(50359..51294) 1 NC_008765.1 KEGG: gox:GOX2704 RepA; hypothetical protein 51294 4670352 Ajs_4219 Acidovorax sp. JS42 hypothetical protein YP_974055.1 50359 R 232721 CDS YP_974056.1 121582524 4670355 complement(51494..51808) 1 NC_008765.1 KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator 51808 4670355 Ajs_4220 Acidovorax sp. JS42 putative transcriptional regulator YP_974056.1 51494 R 232721 CDS YP_974057.1 121582525 4670423 complement(51805..52128) 1 NC_008765.1 PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein 52128 4670423 Ajs_4221 Acidovorax sp. JS42 hypothetical protein YP_974057.1 51805 R 232721 CDS YP_974058.1 121582526 4670422 complement(52202..52600) 1 NC_008765.1 hypothetical protein 52600 4670422 Ajs_4222 Acidovorax sp. JS42 hypothetical protein YP_974058.1 52202 R 232721 CDS YP_974059.1 121582527 4670403 complement(52662..53954) 1 NC_008765.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: fth:FTH_0421 chromosome partition protein B; parB-like partition proteins 53954 4670403 Ajs_4223 Acidovorax sp. JS42 parB-like partition proteins YP_974059.1 52662 R 232721 CDS YP_974060.1 121582528 4670407 complement(53967..54749) 1 NC_008765.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: net:Neut_2592 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 54749 4670407 Ajs_4224 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_974060.1 53967 R 232721 CDS YP_974061.1 121582529 4670406 complement(54778..55197) 1 NC_008765.1 hypothetical protein 55197 4670406 Ajs_4225 Acidovorax sp. JS42 hypothetical protein YP_974061.1 54778 R 232721 CDS YP_974062.1 121582530 4670401 complement(56343..56606) 1 NC_008765.1 KEGG: mes:Meso_3816 hypothetical protein; hypothetical protein 56606 4670401 Ajs_4227 Acidovorax sp. JS42 hypothetical protein YP_974062.1 56343 R 232721 CDS YP_974063.1 121582531 4670388 56797..59712 1 NC_008765.1 PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 59712 4670388 Ajs_4228 Acidovorax sp. JS42 transposase Tn3 family protein YP_974063.1 56797 D 232721 CDS YP_974064.1 121582532 4670383 59806..60255 1 NC_008765.1 hypothetical protein 60255 4670383 Ajs_4229 Acidovorax sp. JS42 hypothetical protein YP_974064.1 59806 D 232721 CDS YP_974065.1 121582533 4670381 complement(60495..61157) 1 NC_008765.1 KEGG: rru:Rru_A0225 metal dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 61157 4670381 Ajs_4230 Acidovorax sp. JS42 metal dependent phosphohydrolase YP_974065.1 60495 R 232721 CDS YP_974066.1 121582534 4670347 complement(61154..61681) 1 NC_008765.1 KEGG: rfr:Rfer_1207 aspartyl protease-like; aspartyl protease-like protein 61681 4670347 Ajs_4231 Acidovorax sp. JS42 aspartyl protease-like protein YP_974066.1 61154 R 232721 CDS YP_974067.1 121582535 4670361 complement(61678..62418) 1 NC_008765.1 hypothetical protein 62418 4670361 Ajs_4232 Acidovorax sp. JS42 hypothetical protein YP_974067.1 61678 R 232721 CDS YP_974068.1 121582536 4670359 complement(62466..63089) 1 NC_008765.1 PFAM: NERD domain protein; KEGG: noc:Noc_0649 DNA topoisomerase I; NERD domain-containing protein 63089 4670359 Ajs_4233 Acidovorax sp. JS42 NERD domain-containing protein YP_974068.1 62466 R 232721 CDS YP_974069.1 121582537 4670357 complement(63107..63808) 1 NC_008765.1 KEGG: net:Neut_1890 conserved hypothetical protein; hypothetical protein 63808 4670357 Ajs_4234 Acidovorax sp. JS42 hypothetical protein YP_974069.1 63107 R 232721 CDS YP_974070.1 121582538 4670426 complement(63818..64861) 1 NC_008765.1 PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_2645 OmpA/MotB; OmpA/MotB domain-containing protein 64861 4670426 Ajs_4235 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_974070.1 63818 R 232721 CDS YP_974071.1 121582539 4670375 complement(64865..65140) 1 NC_008765.1 PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein; histone family protein DNA-binding protein 65140 4670375 Ajs_4236 Acidovorax sp. JS42 histone family protein DNA-binding protein YP_974071.1 64865 R 232721 CDS YP_974072.1 121582540 4670376 complement(65296..65820) 1 NC_008765.1 KEGG: bps:BPSL0759 hypothetical protein; hypothetical protein 65820 4670376 Ajs_4237 Acidovorax sp. JS42 hypothetical protein YP_974072.1 65296 R 232721 CDS YP_974073.1 121582541 4670402 complement(65817..67028) 1 NC_008765.1 PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4329 protein of unknown function DUF1173; hypothetical protein 67028 4670402 Ajs_4238 Acidovorax sp. JS42 hypothetical protein YP_974073.1 65817 R 232721 CDS YP_974074.1 121582542 4670367 complement(67044..68726) 1 NC_008765.1 PFAM: Zeta toxin family protein; KEGG: xac:XACb0057 hypothetical protein; zeta toxin family protein 68726 4670367 Ajs_4239 Acidovorax sp. JS42 zeta toxin family protein YP_974074.1 67044 R 232721 CDS YP_974075.1 121582543 4670384 complement(68744..69004) 1 NC_008765.1 KEGG: xom:XOO_0047 hypothetical protein; hypothetical protein 69004 4670384 Ajs_4240 Acidovorax sp. JS42 hypothetical protein YP_974075.1 68744 R 232721 CDS YP_974076.1 121582544 4670372 complement(69018..69479) 1 NC_008765.1 hypothetical protein 69479 4670372 Ajs_4241 Acidovorax sp. JS42 hypothetical protein YP_974076.1 69018 R 232721 CDS YP_974077.1 121582545 4670378 complement(69512..70600) 1 NC_008765.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: xft:PD1006 cell filamentation protein; filamentation induced by cAMP protein Fic 70600 4670378 Ajs_4242 Acidovorax sp. JS42 filamentation induced by cAMP protein Fic YP_974077.1 69512 R 232721 CDS YP_974078.1 121582546 4670379 complement(70597..70824) 1 NC_008765.1 hypothetical protein 70824 4670379 Ajs_4243 Acidovorax sp. JS42 hypothetical protein YP_974078.1 70597 R 232721 CDS YP_974079.1 121582547 4670393 complement(70837..71100) 1 NC_008765.1 hypothetical protein 71100 4670393 Ajs_4244 Acidovorax sp. JS42 hypothetical protein YP_974079.1 70837 R 232721 CDS YP_974080.1 121582548 4670400 complement(71328..71576) 1 NC_008765.1 hypothetical protein 71576 4670400 Ajs_4245 Acidovorax sp. JS42 hypothetical protein YP_974080.1 71328 R 232721 CDS YP_974081.1 121582549 4670398 complement(71600..72124) 1 NC_008765.1 KEGG: dar:Daro_2214 hypothetical protein; hypothetical protein 72124 4670398 Ajs_4246 Acidovorax sp. JS42 hypothetical protein YP_974081.1 71600 R 232721 CDS YP_974082.1 121582550 4670397 complement(72121..72534) 1 NC_008765.1 KEGG: dar:Daro_2528 hypothetical protein; hypothetical protein 72534 4670397 Ajs_4247 Acidovorax sp. JS42 hypothetical protein YP_974082.1 72121 R 232721 CDS YP_974083.1 121582554 4670502 4..4746 1 NC_008766.1 PFAM: TOPRIM domain protein; domain of unknown function DUF1738; SMART: Toprim sub domain protein; KEGG: reu:Reut_D6521 toprim; hypothetical protein 4746 4670502 Ajs_4248 Acidovorax sp. JS42 hypothetical protein YP_974083.1 4 D 232721 CDS YP_974084.1 121582555 4670492 complement(5044..5619) 1 NC_008766.1 PFAM: Resolvase, N-terminal domain; KEGG: xac:XACb0061 invertase recombinase-like protein; resolvase domain-containing protein 5619 4670492 Ajs_4249 Acidovorax sp. JS42 resolvase domain-containing protein YP_974084.1 5044 R 232721 CDS YP_974085.1 121582556 4670484 complement(5746..6051) 1 NC_008766.1 TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: reu:Reut_D6454 plasmid stabilization system; addiction module antitoxin 6051 4670484 Ajs_4250 Acidovorax sp. JS42 addiction module antitoxin YP_974085.1 5746 R 232721 CDS YP_974086.1 121582557 4670495 6137..6355 1 NC_008766.1 KEGG: tbd:Tbd_1809 hypothetical protein; hypothetical protein 6355 4670495 Ajs_4251 Acidovorax sp. JS42 hypothetical protein YP_974086.1 6137 D 232721 CDS YP_974087.1 121582558 4670497 6352..7308 1 NC_008766.1 KEGG: ngo:NGO0873 DNA modification methylase M.NGOI; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 7308 4670497 Ajs_4252 Acidovorax sp. JS42 DNA-cytosine methyltransferase YP_974087.1 6352 D 232721 CDS YP_974088.1 121582559 4670500 7308..8171 1 NC_008766.1 KEGG: ngo:NGO0874 type II DNA restriction endonuclease R.NGOI; type II DNA restriction endonuclease R.NGOI 8171 4670500 Ajs_4253 Acidovorax sp. JS42 type II DNA restriction endonuclease R.NGOI YP_974088.1 7308 D 232721 CDS YP_974089.1 121582560 4670482 8338..8544 1 NC_008766.1 hypothetical protein 8544 4670482 Ajs_4254 Acidovorax sp. JS42 hypothetical protein YP_974089.1 8338 D 232721 CDS YP_974090.1 121582561 4670480 complement(8608..8841) 1 NC_008766.1 hypothetical protein 8841 4670480 Ajs_4255 Acidovorax sp. JS42 hypothetical protein YP_974090.1 8608 R 232721 CDS YP_974091.1 121582562 4670436 complement(9010..9540) 1 NC_008766.1 KEGG: sdn:Sden_0296 hypothetical protein; hypothetical protein 9540 4670436 Ajs_4257 Acidovorax sp. JS42 hypothetical protein YP_974091.1 9010 R 232721 CDS YP_974092.1 121582563 4670489 complement(9619..10293) 1 NC_008766.1 KEGG: reu:Reut_D6518 phage DNA methylase; phage DNA methylase 10293 4670489 Ajs_4258 Acidovorax sp. JS42 phage DNA methylase YP_974092.1 9619 R 232721 CDS YP_974093.1 121582564 4670493 complement(10449..10880) 1 NC_008766.1 KEGG: bam:Bamb_6620 hypothetical protein; hypothetical protein 10880 4670493 Ajs_4259 Acidovorax sp. JS42 hypothetical protein YP_974093.1 10449 R 232721 CDS YP_974094.1 121582565 4670488 complement(10896..11594) 1 NC_008766.1 PFAM: TraX family protein; KEGG: bam:Bamb_6621 TraX family protein; conjugal transfer protein TrbP 11594 4670488 Ajs_4260 Acidovorax sp. JS42 conjugal transfer protein TrbP YP_974094.1 10896 R 232721 CDS YP_974095.1 121582566 4670479 complement(11594..11860) 1 NC_008766.1 KEGG: bam:Bamb_6622 hypothetical protein; hypothetical protein 11860 4670479 Ajs_4261 Acidovorax sp. JS42 hypothetical protein YP_974095.1 11594 R 232721 CDS YP_974096.1 121582567 4670473 complement(11889..12524) 1 NC_008766.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bam:Bamb_6623 lytic transglycosylase, catalytic; conjugal transfer protein TrbN 12524 4670473 Ajs_4262 Acidovorax sp. JS42 conjugal transfer protein TrbN YP_974096.1 11889 R 232721 CDS YP_974097.1 121582568 4670478 complement(12538..13122) 1 NC_008766.1 PFAM: TrbM family protein; KEGG: bam:Bamb_6624 TrbM family protein; conjugal transfer protein TrbM 13122 4670478 Ajs_4263 Acidovorax sp. JS42 conjugal transfer protein TrbM YP_974097.1 12538 R 232721 CDS YP_974098.1 121582569 4670477 complement(13139..14872) 1 NC_008766.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein; TrbL/VirB6 plasmid conjugal transfer protein 14872 4670477 Ajs_4264 Acidovorax sp. JS42 TrbL/VirB6 plasmid conjugal transfer protein YP_974098.1 13139 R 232721 CDS YP_974099.1 121582570 4670476 complement(14883..15110) 1 NC_008766.1 KEGG: bam:Bamb_6626 entry exclusion protein TrbK; entry exclusion protein TrbK 15110 4670476 Ajs_4265 Acidovorax sp. JS42 entry exclusion protein TrbK YP_974099.1 14883 R 232721 CDS YP_974100.1 121582571 4670475 complement(15120..15884) 1 NC_008766.1 KEGG: bam:Bamb_6627 TrbJ protein of DNA transfer system; conjugal transfer protein TrbJ 15884 4670475 Ajs_4266 Acidovorax sp. JS42 conjugal transfer protein TrbJ YP_974100.1 15120 R 232721 CDS YP_974101.1 121582572 4670474 complement(15902..17320) 1 NC_008766.1 PFAM: conjugation TrbI family protein; KEGG: bam:Bamb_6628 conjugation TrbI family protein; conjugal transfer protein TrbI 17320 4670474 Ajs_4267 Acidovorax sp. JS42 conjugal transfer protein TrbI YP_974101.1 15902 R 232721 CDS YP_974102.1 121582573 4670469 complement(17325..17813) 1 NC_008766.1 PFAM: Conjugal transfer TrbH family protein; KEGG: bam:Bamb_6629 conjugal transfer TrbH family protein; conjugal transfer protein TrbH 17813 4670469 Ajs_4268 Acidovorax sp. JS42 conjugal transfer protein TrbH YP_974102.1 17325 R 232721 CDS YP_974103.1 121582574 4670494 complement(17816..18715) 1 NC_008766.1 type IV secretion system VirB9/CagX family; conjugal transfer protein TrbG 18715 4670494 Ajs_4269 Acidovorax sp. JS42 conjugal transfer protein TrbG YP_974103.1 17816 R 232721 CDS YP_974104.1 121582575 4670487 complement(18733..19515) 1 NC_008766.1 PFAM: Conjugal transfer protein; KEGG: bam:Bamb_6631 conjugal transfer protein; conjugal transfer protein TrbF 19515 4670487 Ajs_4270 Acidovorax sp. JS42 conjugal transfer protein TrbF YP_974104.1 18733 R 232721 CDS YP_974105.1 121582576 4670491 complement(19512..22070) 1 NC_008766.1 type IV secretion system ATPase VirB4 family; conjugal transfer protein TrbE 22070 4670491 Ajs_4271 Acidovorax sp. JS42 conjugal transfer protein TrbE YP_974105.1 19512 R 232721 CDS YP_974106.1 121582577 4670498 complement(22067..22378) 1 NC_008766.1 PFAM: Conjugal transfer TrbD family protein; KEGG: bam:Bamb_6633 conjugal transfer TrbD family protein; conjugal transfer protein TrbD 22378 4670498 Ajs_4272 Acidovorax sp. JS42 conjugal transfer protein TrbD YP_974106.1 22067 R 232721 CDS YP_974107.1 121582578 4670501 complement(22382..22846) 1 NC_008766.1 PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC; conjugal transfer protein TrbC 22846 4670501 Ajs_4273 Acidovorax sp. JS42 conjugal transfer protein TrbC YP_974107.1 22382 R 232721 CDS YP_974108.1 121582579 4670496 complement(22859..23824) 1 NC_008766.1 PFAM: type II secretion system protein E; KEGG: bam:Bamb_6635 type II secretion system protein E; conjugal transfer ATPase TrbB 23824 4670496 Ajs_4274 Acidovorax sp. JS42 conjugal transfer ATPase TrbB YP_974108.1 22859 R 232721 CDS YP_974109.1 121582580 4670499 complement(24135..24497) 1 NC_008766.1 TrbA repressor; conjugal transfer protein TrbA 24497 4670499 Ajs_4275 Acidovorax sp. JS42 conjugal transfer protein TrbA YP_974109.1 24135 R 232721 CDS YP_974110.1 121582581 4670486 24606..24944 1 NC_008766.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bam:Bamb_6592 single-strand binding protein; single-strand binding protein 24944 4670486 Ajs_4276 Acidovorax sp. JS42 single-strand binding protein YP_974110.1 24606 D 232721 CDS YP_974111.1 121582582 4670485 24992..26215 1 NC_008766.1 PFAM: TrfA family protein; KEGG: bam:Bamb_6593 TrfA family protein; TrfA family protein 26215 4670485 Ajs_4277 Acidovorax sp. JS42 TrfA family protein YP_974111.1 24992 D 232721 CDS YP_974112.1 121582583 4670483 complement(26399..26614) 1 NC_008766.1 hypothetical protein 26614 4670483 Ajs_4278 Acidovorax sp. JS42 hypothetical protein YP_974112.1 26399 R 232721 CDS YP_974113.1 121582584 4670481 26769..29168 1 NC_008766.1 PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 29168 4670481 Ajs_4279 Acidovorax sp. JS42 transposase Tn3 family protein YP_974113.1 26769 D 232721 CDS YP_974114.1 121582585 4670437 complement(30539..30847) 1 NC_008766.1 KEGG: bam:Bamb_4312 hypothetical protein; hypothetical protein 30847 4670437 Ajs_4281 Acidovorax sp. JS42 hypothetical protein YP_974114.1 30539 R 232721 CDS YP_974115.1 121582586 4670443 32516..34096 1 NC_008766.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 34096 4670443 Ajs_4283 Acidovorax sp. JS42 putative transposase YP_974115.1 32516 D 232721 CDS YP_974116.1 121582587 4670461 34349..35143 1 NC_008766.1 PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro03880 4-oxalocrotonate decarboxylase; hydratase/decarboxylase 35143 4670461 Ajs_4284 Acidovorax sp. JS42 hydratase/decarboxylase YP_974116.1 34349 D 232721 CDS YP_974117.1 121582588 4670445 35214..35570 1 NC_008766.1 hypothetical protein 35570 4670445 Ajs_4285 Acidovorax sp. JS42 hypothetical protein YP_974117.1 35214 D 232721 CDS YP_974118.1 121582589 4670434 35859..38774 1 NC_008766.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3; transposase Tn3 family protein 38774 4670434 Ajs_4288 Acidovorax sp. JS42 transposase Tn3 family protein YP_974118.1 35859 D 232721 CDS YP_974119.1 121582590 4670433 39194..40810 1 NC_008766.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 40810 4670433 Ajs_4290 Acidovorax sp. JS42 putative transposase YP_974119.1 39194 D 232721 CDS YP_974120.1 121582591 4670432 complement(41801..42511) 1 NC_008766.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pfo:Pfl_0302 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 42511 4670432 Ajs_4292 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_974120.1 41801 R 232721 CDS YP_974121.1 121582592 4670431 43481..43969 1 NC_008766.1 hypothetical protein 43969 4670431 Ajs_4294 Acidovorax sp. JS42 hypothetical protein YP_974121.1 43481 D 232721 CDS YP_974122.1 121582593 4670430 complement(44596..44877) 1 NC_008766.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: reu:Reut_D6454 plasmid stabilization system; addiction module antitoxin 44877 4670430 Ajs_4296 Acidovorax sp. JS42 addiction module antitoxin YP_974122.1 44596 R 232721 CDS YP_974123.1 121582594 4670455 complement(44864..45127) 1 NC_008766.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: reu:Reut_D6453 RelB antitoxin; addiction module antitoxin 45127 4670455 Ajs_4297 Acidovorax sp. JS42 addiction module antitoxin YP_974123.1 44864 R 232721 CDS YP_974124.1 121582595 4670447 45298..45729 1 NC_008766.1 PFAM: Antirestriction protein; KEGG: reu:Reut_D6452 antirestriction protein; antirestriction protein 45729 4670447 Ajs_4298 Acidovorax sp. JS42 antirestriction protein YP_974124.1 45298 D 232721 CDS YP_974125.1 121582596 4670446 45774..45992 1 NC_008766.1 KEGG: reu:Reut_D6451 hypothetical protein; hypothetical protein 45992 4670446 Ajs_4299 Acidovorax sp. JS42 hypothetical protein YP_974125.1 45774 D 232721 CDS YP_974126.1 121582597 4670454 46004..47206 1 NC_008766.1 KEGG: reu:Reut_D6450 hypothetical protein; hypothetical protein 47206 4670454 Ajs_4300 Acidovorax sp. JS42 hypothetical protein YP_974126.1 46004 D 232721 CDS YP_974127.1 121582598 4670453 47223..47480 1 NC_008766.1 KEGG: reu:Reut_D6449 hypothetical protein; hypothetical protein 47480 4670453 Ajs_4301 Acidovorax sp. JS42 hypothetical protein YP_974127.1 47223 D 232721 CDS YP_974128.1 121582599 4670452 47637..47873 1 NC_008766.1 KEGG: reu:Reut_D6448 hypothetical protein; hypothetical protein 47873 4670452 Ajs_4302 Acidovorax sp. JS42 hypothetical protein YP_974128.1 47637 D 232721 CDS YP_974129.1 121582600 4670451 48082..48408 1 NC_008766.1 KEGG: reu:Reut_D6447 hypothetical protein; hypothetical protein 48408 4670451 Ajs_4303 Acidovorax sp. JS42 hypothetical protein YP_974129.1 48082 D 232721 CDS YP_974130.1 121582601 4670450 48411..48740 1 NC_008766.1 KEGG: reu:Reut_D6446 hypothetical protein; hypothetical protein 48740 4670450 Ajs_4304 Acidovorax sp. JS42 hypothetical protein YP_974130.1 48411 D 232721 CDS YP_974131.1 121582602 4670449 48834..49916 1 NC_008766.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: reu:Reut_D6445 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 49916 4670449 Ajs_4305 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_974131.1 48834 D 232721 CDS YP_974132.1 121582603 4670448 49913..50980 1 NC_008766.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: bam:Bamb_6603 ParB-like partition proteins; ParB family protein 50980 4670448 Ajs_4306 Acidovorax sp. JS42 ParB family protein YP_974132.1 49913 D 232721 CDS YP_974133.1 121582604 4670462 51182..52189 1 NC_008766.1 KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein 52189 4670462 Ajs_4307 Acidovorax sp. JS42 hypothetical protein YP_974133.1 51182 D 232721 CDS YP_974134.1 121582605 4670467 52360..52707 1 NC_008766.1 KEGG: bam:Bamb_6605 putative conjugation protein TraO; putative conjugation protein TraO 52707 4670467 Ajs_4308 Acidovorax sp. JS42 putative conjugation protein TraO YP_974134.1 52360 D 232721 CDS YP_974135.1 121582606 4670460 52737..53375 1 NC_008766.1 KEGG: bam:Bamb_6606 hypothetical protein; hypothetical protein 53375 4670460 Ajs_4309 Acidovorax sp. JS42 hypothetical protein YP_974135.1 52737 D 232721 CDS YP_974136.1 121582607 4670472 complement(53571..54011) 1 NC_008766.1 KEGG: bam:Bamb_6607 TraM protein; conjugal transfer protein TraM 54011 4670472 Ajs_4310 Acidovorax sp. JS42 conjugal transfer protein TraM YP_974136.1 53571 R 232721 CDS YP_974137.1 121582608 4670471 complement(54011..54736) 1 NC_008766.1 KEGG: reu:Reut_D6529 transfer origin protein, TraL; conjugal transfer protein TraL 54736 4670471 Ajs_4311 Acidovorax sp. JS42 conjugal transfer protein TraL YP_974137.1 54011 R 232721 CDS YP_974138.1 121582609 4670465 complement(54736..55155) 1 NC_008766.1 KEGG: bam:Bamb_6609 TraK protein of DNA transfer system; TraK protein of DNA transfer system 55155 4670465 Ajs_4312 Acidovorax sp. JS42 TraK protein of DNA transfer system YP_974138.1 54736 R 232721 CDS YP_974139.1 121582610 4670456 55518..55739 1 NC_008766.1 hypothetical protein 55739 4670456 Ajs_4313 Acidovorax sp. JS42 hypothetical protein YP_974139.1 55518 D 232721 CDS YP_974140.1 121582611 4670459 55744..56115 1 NC_008766.1 KEGG: bam:Bamb_6610 TraJ protein of DNA transfer system; conjugal transfer relaxosome component TraJ 56115 4670459 Ajs_4314 Acidovorax sp. JS42 conjugal transfer relaxosome component TraJ YP_974140.1 55744 D 232721 CDS YP_974141.1 121582612 4670438 56150..58408 1 NC_008766.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: reu:Reut_D6526 relaxase/mobilization nuclease domain; conjugal transfer relaxase TraI 58408 4670438 Ajs_4315 Acidovorax sp. JS42 conjugal transfer relaxase TraI YP_974141.1 56150 D 232721 CDS YP_974142.1 121582613 4670442 58405..58680 1 NC_008766.1 KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK; putative entry/exclusion protein TrbK 58680 4670442 Ajs_4316 Acidovorax sp. JS42 putative entry/exclusion protein TrbK YP_974142.1 58405 D 232721 CDS YP_974143.1 121582614 4670441 58677..60581 1 NC_008766.1 type IV secretion system VirD4 family; conjugal transfer coupling protein TraG 60581 4670441 Ajs_4317 Acidovorax sp. JS42 conjugal transfer coupling protein TraG YP_974143.1 58677 D 232721 CDS YP_974144.1 121582615 4670444 60578..61114 1 NC_008766.1 KEGG: bam:Bamb_6613 TraF protein of DNA transfer system; conjugal transfer peptidase TraF 61114 4670444 Ajs_4318 Acidovorax sp. JS42 conjugal transfer peptidase TraF YP_974144.1 60578 D 232721 CDS YP_974145.1 121582616 4670440 61129..63192 1 NC_008766.1 KEGG: bam:Bamb_6614 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase III 63192 4670440 Ajs_4319 Acidovorax sp. JS42 DNA topoisomerase III YP_974145.1 61129 D 232721 CDS YP_974146.1 121582617 4670439 63217..63609 1 NC_008766.1 KEGG: bam:Bamb_6615 conjugal transfer protein; conjugal transfer protein 63609 4670439 Ajs_4320 Acidovorax sp. JS42 conjugal transfer protein YP_974146.1 63217 D 232721 CDS YP_984333.1 121592437 4672148 212..694 1 NC_008782.1 PFAM: NLP/P60 protein; KEGG: rfr:Rfer_0741 NLP/P60; NLP/P60 protein 694 4672148 Ajs_0001 Acidovorax sp. JS42 NLP/P60 protein YP_984333.1 212 D 232721 CDS YP_984334.1 121592438 4670651 822..1922 1 NC_008782.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1922 4670651 Ajs_0002 Acidovorax sp. JS42 phospho-2-dehydro-3-deoxyheptonate aldolase YP_984334.1 822 D 232721 CDS YP_984335.1 121592439 4671061 2149..4158 1 NC_008782.1 KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4158 4671061 Ajs_0003 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_984335.1 2149 D 232721 CDS YP_984336.1 121592440 4671169 complement(4216..5019) 1 NC_008782.1 PFAM: regulatory proteins, IclR; KEGG: mag:amb2598 transcriptional regulator; regulatory proteins, IclR 5019 4671169 Ajs_0004 Acidovorax sp. JS42 regulatory proteins, IclR YP_984336.1 4216 R 232721 CDS YP_984337.1 121592441 4671332 5262..6233 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1420 twin-arginine translocation pathway signal; hypothetical protein 6233 4671332 Ajs_0005 Acidovorax sp. JS42 hypothetical protein YP_984337.1 5262 D 232721 CDS YP_984338.1 121592442 4671272 complement(6572..7177) 1 NC_008782.1 KEGG: bxe:Bxe_A1159 hypothetical protein; hypothetical protein 7177 4671272 Ajs_0006 Acidovorax sp. JS42 hypothetical protein YP_984338.1 6572 R 232721 CDS YP_984339.1 121592443 4671717 complement(7318..7947) 1 NC_008782.1 KEGG: pol:Bpro_0029 hypothetical protein; hypothetical protein 7947 4671717 Ajs_0007 Acidovorax sp. JS42 hypothetical protein YP_984339.1 7318 R 232721 CDS YP_984340.1 121592444 4671890 8260..9237 1 NC_008782.1 Required for efficient pilin antigenic variation; recombination associated protein 9237 rdgC 4671890 rdgC Acidovorax sp. JS42 recombination associated protein YP_984340.1 8260 D 232721 CDS YP_984341.1 121592445 4672499 complement(9306..10658) 1 NC_008782.1 PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3471 C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 10658 4672499 Ajs_0009 Acidovorax sp. JS42 sodium:dicarboxylate symporter YP_984341.1 9306 R 232721 CDS YP_984342.1 121592446 4671875 10828..13482 1 NC_008782.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: xcb:XC_0818 sensor histidine kinase; multi-sensor hybrid histidine kinase 13482 4671875 Ajs_0010 Acidovorax sp. JS42 multi-sensor hybrid histidine kinase YP_984342.1 10828 D 232721 CDS YP_984343.1 121592447 4672372 complement(13553..14197) 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: xcb:XC_0816 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator 14197 4672372 Ajs_0011 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_984343.1 13553 R 232721 CDS YP_984344.1 121592448 4672501 14252..15505 1 NC_008782.1 PFAM: nucleoside recognition domain protein; KEGG: rme:Rmet_3343 nucleoside recognition; nucleoside recognition domain-containing protein 15505 4672501 Ajs_0012 Acidovorax sp. JS42 nucleoside recognition domain-containing protein YP_984344.1 14252 D 232721 CDS YP_984345.1 121592449 4672770 15982..16272 1 NC_008782.1 KEGG: pol:Bpro_4168 hypothetical protein; hypothetical protein 16272 4672770 Ajs_0013 Acidovorax sp. JS42 hypothetical protein YP_984345.1 15982 D 232721 CDS YP_984346.1 121592450 4673009 complement(16463..17650) 1 NC_008782.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 17650 4673009 Ajs_0014 Acidovorax sp. JS42 beta-ketothiolase YP_984346.1 16463 R 232721 CDS YP_984347.1 121592451 4673156 complement(17647..18198) 1 NC_008782.1 PFAM: protein of unknown function DUF1130; KEGG: bbr:BB2477 hypothetical protein; hypothetical protein 18198 4673156 Ajs_0015 Acidovorax sp. JS42 hypothetical protein YP_984347.1 17647 R 232721 CDS YP_984348.1 121592452 4673112 complement(18211..18426) 1 NC_008782.1 KEGG: nha:Nham_2097 hypothetical protein; hypothetical protein 18426 4673112 Ajs_0016 Acidovorax sp. JS42 hypothetical protein YP_984348.1 18211 R 232721 CDS YP_984349.1 121592453 4673761 complement(18538..19041) 1 NC_008782.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_0023 transcriptional regulator, MerR family; MerR family transcriptional regulator 19041 4673761 Ajs_0017 Acidovorax sp. JS42 MerR family transcriptional regulator YP_984349.1 18538 R 232721 CDS YP_984350.1 121592454 4673818 complement(19038..19235) 1 NC_008782.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein; heavy metal transport/detoxification protein 19235 4673818 Ajs_0018 Acidovorax sp. JS42 heavy metal transport/detoxification protein YP_984350.1 19038 R 232721 CDS YP_984351.1 121592455 4673897 19413..21761 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0024 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 21761 4673897 Ajs_0019 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_984351.1 19413 D 232721 CDS YP_984352.1 121592456 4673872 21945..23597 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 23597 4673872 Ajs_0020 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_984352.1 21945 D 232721 CDS YP_984353.1 121592457 4674541 complement(23784..24527) 1 NC_008782.1 KEGG: pen:PSEEN2125 hypothetical protein; hypothetical protein 24527 4674541 Ajs_0021 Acidovorax sp. JS42 hypothetical protein YP_984353.1 23784 R 232721 CDS YP_984354.1 121592458 4674419 complement(24678..25802) 1 NC_008782.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 25802 4674419 Ajs_0022 Acidovorax sp. JS42 NADH:flavin oxidoreductase/NADH oxidase YP_984354.1 24678 R 232721 CDS YP_984355.1 121592459 4673698 complement(26068..26676) 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_0047 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 26676 4673698 Ajs_0023 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_984355.1 26068 R 232721 CDS YP_984356.1 121592460 4673546 complement(26810..27145) 1 NC_008782.1 PFAM: protein of unknown function UPF0153; KEGG: bbr:BB3393 hypothetical protein; hypothetical protein 27145 4673546 Ajs_0024 Acidovorax sp. JS42 hypothetical protein YP_984356.1 26810 R 232721 CDS YP_984357.1 121592461 4673484 complement(27142..27726) 1 NC_008782.1 PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_0072 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 27726 4673484 Ajs_0025 Acidovorax sp. JS42 NADPH-dependent FMN reductase YP_984357.1 27142 R 232721 CDS YP_984358.1 121592462 4673432 27939..29924 1 NC_008782.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 29924 4673432 Ajs_0026 Acidovorax sp. JS42 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_984358.1 27939 D 232721 CDS YP_984359.1 121592463 4673399 29921..30601 1 NC_008782.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 30601 gidB 4673399 gidB Acidovorax sp. JS42 16S rRNA methyltransferase GidB YP_984359.1 29921 D 232721 CDS YP_984360.1 121592464 4672962 30636..31250 1 NC_008782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 31250 4672962 Ajs_0028 Acidovorax sp. JS42 lysine exporter protein LysE/YggA YP_984360.1 30636 D 232721 CDS YP_984361.1 121592465 4672695 31267..32037 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase; chromosome segregation ATPase 32037 4672695 Ajs_0029 Acidovorax sp. JS42 chromosome segregation ATPase YP_984361.1 31267 D 232721 CDS YP_984362.1 121592466 4672664 32124..32666 1 NC_008782.1 PFAM: protein of unknown function DUF1234; KEGG: rfr:Rfer_0052 protein of unknown function DUF1234; hypothetical protein 32666 4672664 Ajs_0030 Acidovorax sp. JS42 hypothetical protein YP_984362.1 32124 D 232721 CDS YP_984363.1 121592467 4672022 32673..33668 1 NC_008782.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins; chromosome segregation DNA-binding protein 33668 4672022 Ajs_0031 Acidovorax sp. JS42 chromosome segregation DNA-binding protein YP_984363.1 32673 D 232721 CDS YP_984364.1 121592468 4672013 33694..34491 1 NC_008782.1 PFAM: Methyltransferase type 12; KEGG: rfr:Rfer_0054 methyltransferase type 12; type 12 methyltransferase 34491 4672013 Ajs_0032 Acidovorax sp. JS42 type 12 methyltransferase YP_984364.1 33694 D 232721 CDS YP_984365.1 121592469 4672246 34652..35692 1 NC_008782.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bur:Bcep18194_B2884 hypothetical protein; peptidoglycan-binding domain-containing protein 35692 4672246 Ajs_0033 Acidovorax sp. JS42 peptidoglycan-binding domain-containing protein YP_984365.1 34652 D 232721 CDS YP_984366.1 121592470 4672209 complement(35848..36177) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3017 hypothetical protein; sulfite dehydrogenase (cytochrome) subunit SorB 36177 4672209 Ajs_0034 Acidovorax sp. JS42 sulfite dehydrogenase (cytochrome) subunit SorB YP_984366.1 35848 R 232721 CDS YP_984367.1 121592471 4672168 complement(36284..37504) 1 NC_008782.1 PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pol:Bpro_3018 Mo-co oxidoreductase dimerisation domain; sulfite dehydrogenase (cytochrome) subunit SorA apoprotein 37504 4672168 Ajs_0035 Acidovorax sp. JS42 sulfite dehydrogenase (cytochrome) subunit SorA apoprotein YP_984367.1 36284 R 232721 CDS YP_984368.1 121592472 4672074 37587..38165 1 NC_008782.1 hypothetical protein 38165 4672074 Ajs_0036 Acidovorax sp. JS42 hypothetical protein YP_984368.1 37587 D 232721 CDS YP_984369.1 121592473 4671433 complement(38189..38761) 1 NC_008782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dar:Daro_0521 sigma-70 region 2:sigma-70 region 4; ECF subfamily RNA polymerase sigma-24 factor 38761 4671433 Ajs_0037 Acidovorax sp. JS42 ECF subfamily RNA polymerase sigma-24 factor YP_984369.1 38189 R 232721 CDS YP_984370.1 121592474 4671579 complement(38883..39749) 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bpm:BURPS1710b_2619 transcriptional regulator, AraC family; AraC family transcriptional regulator 39749 4671579 Ajs_0038 Acidovorax sp. JS42 AraC family transcriptional regulator YP_984370.1 38883 R 232721 CDS YP_984371.1 121592475 4671564 39815..41077 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1964 major facilitator superfamily MFS_1; major facilitator superfamily transporter 41077 4671564 Ajs_0039 Acidovorax sp. JS42 major facilitator superfamily transporter YP_984371.1 39815 D 232721 CDS YP_984372.1 121592476 4671011 complement(41155..42579) 1 NC_008782.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like; Fis family transcriptional regulator 42579 4671011 Ajs_0040 Acidovorax sp. JS42 Fis family transcriptional regulator YP_984372.1 41155 R 232721 CDS YP_984373.1 121592477 4670956 complement(42717..43796) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 43796 4670956 Ajs_0041 Acidovorax sp. JS42 integrase catalytic subunit YP_984373.1 42717 R 232721 CDS YP_984374.1 121592478 4670857 complement(44043..44423) 1 NC_008782.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_0112 acid shock protein-like; calcium-binding EF-hand-containing protein 44423 4670857 Ajs_0042 Acidovorax sp. JS42 calcium-binding EF-hand-containing protein YP_984374.1 44043 R 232721 CDS YP_984375.1 121592479 4670769 44579..45151 1 NC_008782.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase 45151 4670769 Ajs_0043 Acidovorax sp. JS42 ATP:cob(I)alamin adenosyltransferase YP_984375.1 44579 D 232721 CDS YP_984376.1 121592480 4670673 complement(45521..45943) 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0061 phenylacetic acid degradation-related protein; hypothetical protein 45943 4670673 Ajs_0044 Acidovorax sp. JS42 hypothetical protein YP_984376.1 45521 R 232721 CDS YP_984377.1 121592481 4670626 46167..47324 1 NC_008782.1 KEGG: dar:Daro_3540 extracellular ligand-binding receptor; extracellular ligand-binding receptor 47324 4670626 Ajs_0045 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_984377.1 46167 D 232721 CDS YP_984378.1 121592482 4674675 complement(47449..48969) 1 NC_008782.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase 48969 4674675 Ajs_0046 Acidovorax sp. JS42 Acetyl-CoA hydrolase YP_984378.1 47449 R 232721 CDS YP_984379.1 121592483 4670604 49169..49909 1 NC_008782.1 KEGG: dar:Daro_1795 hypothetical protein; hypothetical protein 49909 4670604 Ajs_0047 Acidovorax sp. JS42 hypothetical protein YP_984379.1 49169 D 232721 CDS YP_984380.1 121592484 4670699 complement(50045..51331) 1 NC_008782.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease; uracil-xanthine permease 51331 4670699 Ajs_0048 Acidovorax sp. JS42 uracil-xanthine permease YP_984380.1 50045 R 232721 CDS YP_984381.1 121592485 4670560 complement(51534..52832) 1 NC_008782.1 KEGG: pfo:Pfl_4308 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 52832 4670560 Ajs_0049 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_984381.1 51534 R 232721 CDS YP_984382.1 121592486 4671088 complement(52711..54834) 1 NC_008782.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: eba:ebA5328 conserved hypothetical protein, predicted radical-SAM emzyme; radical SAM domain-containing protein 54834 4671088 Ajs_0050 Acidovorax sp. JS42 radical SAM domain-containing protein YP_984382.1 52711 R 232721 CDS YP_984383.1 121592487 4671134 complement(56009..57274) 1 NC_008782.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: xcc:XCC2647 hypothetical protein; hypothetical protein 57274 4671134 Ajs_0052 Acidovorax sp. JS42 hypothetical protein YP_984383.1 56009 R 232721 CDS YP_984384.1 121592488 4671151 57396..57686 1 NC_008782.1 hypothetical protein 57686 4671151 Ajs_0053 Acidovorax sp. JS42 hypothetical protein YP_984384.1 57396 D 232721 CDS YP_984385.1 121592489 4671172 57800..60064 1 NC_008782.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 60064 4671172 Ajs_0054 Acidovorax sp. JS42 acetoacetyl-CoA synthetase YP_984385.1 57800 D 232721 CDS YP_984386.1 121592490 4671340 complement(60098..61027) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B3561 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 61027 4671340 Ajs_0055 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984386.1 60098 R 232721 CDS YP_984387.1 121592491 4670587 61158..62144 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP3809 hypothetical protein; hypothetical protein 62144 4670587 Ajs_0056 Acidovorax sp. JS42 hypothetical protein YP_984387.1 61158 D 232721 CDS YP_984388.1 121592492 4671515 62141..63388 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pfo:Pfl_0118 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 63388 4671515 Ajs_0057 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_984388.1 62141 D 232721 CDS YP_984389.1 121592493 4671257 63385..64581 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3560 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 64581 4671257 Ajs_0058 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_984389.1 63385 D 232721 CDS YP_984390.1 121592494 4671613 64578..65045 1 NC_008782.1 KEGG: reu:Reut_B3559 hypothetical protein; hypothetical protein 65045 4671613 Ajs_0059 Acidovorax sp. JS42 hypothetical protein YP_984390.1 64578 D 232721 CDS YP_984391.1 121592495 4671833 65113..66081 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4073 uncharacterized protein UPF0065; hypothetical protein 66081 4671833 Ajs_0060 Acidovorax sp. JS42 hypothetical protein YP_984391.1 65113 D 232721 CDS YP_984392.1 121592496 4671899 66104..67261 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eba:p2A7 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 67261 4671899 Ajs_0061 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984392.1 66104 D 232721 CDS YP_984393.1 121592497 4671869 67276..68307 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_B3556 acyl-CoA dehydrogenase, C-terminal; acyl-CoA dehydrogenase domain-containing protein 68307 4671869 Ajs_0062 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984393.1 67276 D 232721 CDS YP_984394.1 121592498 4672078 68417..69205 1 NC_008782.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 69205 4672078 Ajs_0063 Acidovorax sp. JS42 enoyl-CoA hydratase YP_984394.1 68417 D 232721 CDS YP_984395.1 121592499 4672089 69263..69886 1 NC_008782.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 69886 4672089 Ajs_0064 Acidovorax sp. JS42 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_984395.1 69263 D 232721 CDS YP_984396.1 121592500 4672317 70118..70885 1 NC_008782.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: rfr:Rfer_0036 septum site-determining protein MinC; septum site-determining protein MinC 70885 4672317 Ajs_0065 Acidovorax sp. JS42 septum site-determining protein MinC YP_984396.1 70118 D 232721 CDS YP_984397.1 121592501 4672035 70937..71752 1 NC_008782.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD; septum site-determining protein MinD 71752 4672035 Ajs_0066 Acidovorax sp. JS42 septum site-determining protein MinD YP_984397.1 70937 D 232721 CDS YP_984398.1 121592502 4672437 71758..72024 1 NC_008782.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: rfr:Rfer_0034 cell division topological specificity factor MinE; cell division topological specificity factor MinE 72024 4672437 Ajs_0067 Acidovorax sp. JS42 cell division topological specificity factor MinE YP_984398.1 71758 D 232721 CDS YP_984399.1 121592503 4673149 complement(72101..72661) 1 NC_008782.1 PFAM: flavin reductase domain protein, FMN-binding; KEGG: rfr:Rfer_4057 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein 72661 4673149 Ajs_0068 Acidovorax sp. JS42 flavin reductase domain-containing protein YP_984399.1 72101 R 232721 CDS YP_984400.1 121592504 4672583 72768..73550 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: bja:blr6083 putative hydrolase; alpha/beta hydrolase fold protein 73550 4672583 Ajs_0069 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_984400.1 72768 D 232721 CDS YP_984401.1 121592505 4672480 73689..74879 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 74879 4672480 Ajs_0070 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_984401.1 73689 D 232721 CDS YP_984402.1 121592506 4673048 complement(74892..76256) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 76256 4673048 Ajs_0071 Acidovorax sp. JS42 D-amino-acid dehydrogenase YP_984402.1 74892 R 232721 CDS YP_984403.1 121592507 4673066 76320..77231 1 NC_008782.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 77231 4673066 Ajs_0072 Acidovorax sp. JS42 chromosome replication initiation inhibitor protein YP_984403.1 76320 D 232721 CDS YP_984404.1 121592508 4673143 77302..77934 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0153 transcriptional regulator, TetR family; TetR family transcriptional regulator 77934 4673143 Ajs_0073 Acidovorax sp. JS42 TetR family transcriptional regulator YP_984404.1 77302 D 232721 CDS YP_984405.1 121592509 4673457 complement(77935..78357) 1 NC_008782.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA; UspA domain-containing protein 78357 4673457 Ajs_0074 Acidovorax sp. JS42 UspA domain-containing protein YP_984405.1 77935 R 232721 CDS YP_984406.1 121592510 4673596 complement(78477..79322) 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase; metallophosphoesterase 79322 4673596 Ajs_0075 Acidovorax sp. JS42 metallophosphoesterase YP_984406.1 78477 R 232721 CDS YP_984407.1 121592511 4673628 complement(79339..80310) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator 80310 4673628 Ajs_0076 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984407.1 79339 R 232721 CDS YP_984408.1 121592512 4673690 80434..80874 1 NC_008782.1 KEGG: pol:Bpro_0159 hypothetical protein; hypothetical protein 80874 4673690 Ajs_0077 Acidovorax sp. JS42 hypothetical protein YP_984408.1 80434 D 232721 CDS YP_984409.1 121592513 4673772 complement(81052..82923) 1 NC_008782.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 82923 4673772 Ajs_0078 Acidovorax sp. JS42 phosphoenolpyruvate carboxykinase YP_984409.1 81052 R 232721 CDS YP_984410.1 121592514 4673784 complement(83258..83491) 1 NC_008782.1 hypothetical protein 83491 4673784 Ajs_0079 Acidovorax sp. JS42 hypothetical protein YP_984410.1 83258 R 232721 CDS YP_984411.1 121592515 4673817 complement(83527..84726) 1 NC_008782.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 84726 4673817 Ajs_0080 Acidovorax sp. JS42 threonine dehydratase YP_984411.1 83527 R 232721 CDS YP_984412.1 121592516 4674062 complement(84837..86492) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bam:Bamb_0107 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 86492 4674062 Ajs_0081 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984412.1 84837 R 232721 CDS YP_984413.1 121592517 4674033 complement(86645..87307) 1 NC_008782.1 hypothetical protein 87307 4674033 Ajs_0082 Acidovorax sp. JS42 hypothetical protein YP_984413.1 86645 R 232721 CDS YP_984414.1 121592518 4674343 complement(87355..88455) 1 NC_008782.1 PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase; methionine synthase 88455 4674343 Ajs_0083 Acidovorax sp. JS42 methionine synthase YP_984414.1 87355 R 232721 CDS YP_984415.1 121592519 4674537 88553..90424 1 NC_008782.1 KEGG: rfr:Rfer_0459 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 90424 4674537 Ajs_0084 Acidovorax sp. JS42 ATP-dependent DNA helicase RecQ YP_984415.1 88553 D 232721 CDS YP_984416.1 121592520 4674510 complement(90425..91111) 1 NC_008782.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_5137 ribonucleoside-triphosphate reductase, anaerobic-like protein; anaerobic ribonucleoside-triphosphate reductase activating protein 91111 4674510 Ajs_0085 Acidovorax sp. JS42 anaerobic ribonucleoside-triphosphate reductase activating protein YP_984416.1 90425 R 232721 CDS YP_984417.1 121592521 4674391 complement(91101..91292) 1 NC_008782.1 KEGG: rme:Rmet_5138 hypothetical protein; hypothetical protein 91292 4674391 Ajs_0086 Acidovorax sp. JS42 hypothetical protein YP_984417.1 91101 R 232721 CDS YP_984418.1 121592522 4674310 complement(91374..93410) 1 NC_008782.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 93410 4674310 Ajs_0087 Acidovorax sp. JS42 anaerobic ribonucleoside triphosphate reductase YP_984418.1 91374 R 232721 CDS YP_984419.1 121592523 4673273 complement(93706..97032) 1 NC_008782.1 KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 97032 4673273 Ajs_0088 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_984419.1 93706 R 232721 CDS YP_984420.1 121592524 4673266 complement(97384..98472) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 98472 4673266 Ajs_0089 Acidovorax sp. JS42 transposase, IS4 family protein YP_984420.1 97384 R 232721 CDS YP_984421.1 121592525 4673409 98635..99714 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 99714 4673409 Ajs_0090 Acidovorax sp. JS42 integrase catalytic subunit YP_984421.1 98635 D 232721 CDS YP_984422.1 121592526 4672984 complement(99819..100244) 1 NC_008782.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_0892 hemerythrin HHE cation binding protein; hemerythrin HHE cation-binding domain-containing protein 100244 4672984 Ajs_0091 Acidovorax sp. JS42 hemerythrin HHE cation-binding domain-containing protein YP_984422.1 99819 R 232721 CDS YP_984423.1 121592527 4672939 complement(100319..102625) 1 NC_008782.1 KEGG: reu:Reut_B5055 nitric oxide reductase large subunit; nitric oxide reductase large subunit 102625 4672939 Ajs_0092 Acidovorax sp. JS42 nitric oxide reductase large subunit YP_984423.1 100319 R 232721 CDS YP_984424.1 121592528 4672862 102763..104385 1 NC_008782.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 104385 4672862 Ajs_0093 Acidovorax sp. JS42 anaerobic nitric oxide reductase transcription regulator YP_984424.1 102763 D 232721 CDS YP_984425.1 121592529 4672683 104530..105579 1 NC_008782.1 KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 105579 4672683 Ajs_0094 Acidovorax sp. JS42 hypothetical protein YP_984425.1 104530 D 232721 CDS YP_984426.1 121592530 4672024 105662..107050 1 NC_008782.1 KEGG: pol:Bpro_4369 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase 107050 4672024 Ajs_0095 Acidovorax sp. JS42 L-serine ammonia-lyase YP_984426.1 105662 D 232721 CDS YP_984427.1 121592531 4672014 107110..108318 1 NC_008782.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 108318 4672014 Ajs_0096 Acidovorax sp. JS42 aspartate aminotransferase YP_984427.1 107110 D 232721 CDS YP_984428.1 121592532 4672009 108498..109448 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065; hypothetical protein 109448 4672009 Ajs_0097 Acidovorax sp. JS42 hypothetical protein YP_984428.1 108498 D 232721 CDS YP_984429.1 121592533 4672205 109495..111063 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1913 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 111063 4672205 Ajs_0098 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984429.1 109495 D 232721 CDS YP_984430.1 121592534 4672180 111091..112086 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5061 uncharacterized protein UPF0065; hypothetical protein 112086 4672180 Ajs_0099 Acidovorax sp. JS42 hypothetical protein YP_984430.1 111091 D 232721 CDS YP_984431.1 121592535 4672093 112249..112716 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A0210 phenylacetic acid degradation-related protein; hypothetical protein 112716 4672093 Ajs_0100 Acidovorax sp. JS42 hypothetical protein YP_984431.1 112249 D 232721 CDS YP_984432.1 121592536 4671754 complement(112744..113763) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0242 hypothetical protein; hypothetical protein 113763 4671754 Ajs_0101 Acidovorax sp. JS42 hypothetical protein YP_984432.1 112744 R 232721 CDS YP_984433.1 121592537 4671435 complement(114003..114989) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4501 twin-arginine translocation pathway signal; hypothetical protein 114989 4671435 Ajs_0102 Acidovorax sp. JS42 hypothetical protein YP_984433.1 114003 R 232721 CDS YP_984434.1 121592538 4671405 complement(115034..116188) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_C0602 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 116188 4671405 Ajs_0103 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984434.1 115034 R 232721 CDS YP_984435.1 121592539 4671483 complement(116267..117841) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5158 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 117841 4671483 Ajs_0104 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984435.1 116267 R 232721 CDS YP_984436.1 121592540 4671038 118051..119229 1 NC_008782.1 KEGG: rme:Rmet_5156 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 119229 4671038 Ajs_0105 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_984436.1 118051 D 232721 CDS YP_984437.1 121592541 4670914 119295..120062 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1668 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 120062 4670914 Ajs_0106 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984437.1 119295 D 232721 CDS YP_984438.1 121592542 4670752 120249..121013 1 NC_008782.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 121013 4670752 Ajs_0107 Acidovorax sp. JS42 enoyl-CoA hydratase YP_984438.1 120249 D 232721 CDS YP_984439.1 121592543 4673261 121113..122111 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5153 uncharacterized protein UPF0065; hypothetical protein 122111 4673261 Ajs_0108 Acidovorax sp. JS42 hypothetical protein YP_984439.1 121113 D 232721 CDS YP_984440.1 121592544 4670631 122124..122930 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sde:Sde_2377 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 122930 4670631 Ajs_0109 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984440.1 122124 D 232721 CDS YP_984441.1 121592545 4671397 122927..123721 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B3551 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 123721 4671397 Ajs_0110 Acidovorax sp. JS42 enoyl-CoA hydratase/isomerase YP_984441.1 122927 D 232721 CDS YP_984442.1 121592546 4671381 123762..124550 1 NC_008782.1 SMART: regulatory proteins, IclR; KEGG: rme:Rmet_5157 transcriptional regulator, IclR family; regulatory proteins, IclR 124550 4671381 Ajs_0111 Acidovorax sp. JS42 regulatory proteins, IclR YP_984442.1 123762 D 232721 CDS YP_984443.1 121592547 4671479 124594..125706 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2536 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 125706 4671479 Ajs_0112 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_984443.1 124594 D 232721 CDS YP_984444.1 121592548 4671270 complement(125743..126966) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein; major facilitator superfamily transporter 126966 4671270 Ajs_0113 Acidovorax sp. JS42 major facilitator superfamily transporter YP_984444.1 125743 R 232721 CDS YP_984445.1 121592549 4670740 complement(127049..127918) 1 NC_008782.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; HpcH/HpaI aldolase 127918 4670740 Ajs_0114 Acidovorax sp. JS42 HpcH/HpaI aldolase YP_984445.1 127049 R 232721 CDS YP_984446.1 121592550 4670958 complement(128112..129119) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065; hypothetical protein 129119 4670958 Ajs_0115 Acidovorax sp. JS42 hypothetical protein YP_984446.1 128112 R 232721 CDS YP_984447.1 121592551 4671219 complement(129285..130649) 1 NC_008782.1 PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD; MmgE/PrpD family protein 130649 4671219 Ajs_0116 Acidovorax sp. JS42 MmgE/PrpD family protein YP_984447.1 129285 R 232721 CDS YP_984448.1 121592552 4671480 complement(130700..131890) 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 131890 4671480 Ajs_0117 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_984448.1 130700 R 232721 CDS YP_984449.1 121592553 4671539 complement(132084..133244) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 133244 4671539 Ajs_0118 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984449.1 132084 R 232721 CDS YP_984450.1 121592554 4671502 complement(133316..134221) 1 NC_008782.1 KEGG: pol:Bpro_0584 hypothetical protein; hypothetical protein 134221 4671502 Ajs_0119 Acidovorax sp. JS42 hypothetical protein YP_984450.1 133316 R 232721 CDS YP_984451.1 121592555 4671987 134415..135332 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll6372 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 135332 4671987 Ajs_0120 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984451.1 134415 D 232721 CDS YP_984452.1 121592556 4672556 135595..136488 1 NC_008782.1 PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3807 MaoC-like dehydratase; dehydratase 136488 4672556 Ajs_0121 Acidovorax sp. JS42 dehydratase YP_984452.1 135595 D 232721 CDS YP_984453.1 121592557 4671852 136567..137361 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase; enoyl-CoA hydratase 137361 4671852 Ajs_0122 Acidovorax sp. JS42 enoyl-CoA hydratase YP_984453.1 136567 D 232721 CDS YP_984454.1 121592558 4672316 137494..138819 1 NC_008782.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: bpa:BPP0600 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 138819 4672316 Ajs_0123 Acidovorax sp. JS42 acetyl-CoA hydrolase/transferase YP_984454.1 137494 D 232721 CDS YP_984455.1 121592559 4672578 138883..140091 1 NC_008782.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 140091 4672578 Ajs_0124 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_984455.1 138883 D 232721 CDS YP_984456.1 121592560 4672563 140351..141325 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3797 uncharacterized protein UPF0065; hypothetical protein 141325 4672563 Ajs_0125 Acidovorax sp. JS42 hypothetical protein YP_984456.1 140351 D 232721 CDS YP_984457.1 121592561 4673215 141327..142841 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_3802 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 142841 4673215 Ajs_0126 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984457.1 141327 D 232721 CDS YP_984458.1 121592562 4672670 142859..143836 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3801 uncharacterized protein UPF0065; hypothetical protein 143836 4672670 Ajs_0127 Acidovorax sp. JS42 hypothetical protein YP_984458.1 142859 D 232721 CDS YP_984459.1 121592563 4672952 143932..144315 1 NC_008782.1 PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3511 protein of unknown function DUF35; hypothetical protein 144315 4672952 Ajs_0128 Acidovorax sp. JS42 hypothetical protein YP_984459.1 143932 D 232721 CDS YP_984460.1 121592564 4672716 144312..145520 1 NC_008782.1 KEGG: reu:Reut_B3512 thiolase; thiolase 145520 4672716 Ajs_0129 Acidovorax sp. JS42 thiolase YP_984460.1 144312 D 232721 CDS YP_984461.1 121592565 4674021 145547..146704 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7329 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 146704 4674021 Ajs_0130 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984461.1 145547 D 232721 CDS YP_984462.1 121592566 4673535 146701..147123 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1837 hypothetical protein; hypothetical protein 147123 4673535 Ajs_0131 Acidovorax sp. JS42 hypothetical protein YP_984462.1 146701 D 232721 CDS YP_984463.1 121592567 4673793 complement(147200..148108) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB2959 probable transcriptional regulator; LysR family transcriptional regulator 148108 4673793 Ajs_0132 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984463.1 147200 R 232721 CDS YP_984464.1 121592568 4673924 148245..149531 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_3808 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 149531 4673924 Ajs_0133 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_984464.1 148245 D 232721 CDS YP_984465.1 121592569 4674072 complement(149539..150513) 1 NC_008782.1 PFAM: porin, Gram-negative type; KEGG: bcn:Bcen_4125 porin, gram-negative type; porin 150513 4674072 Ajs_0134 Acidovorax sp. JS42 porin YP_984465.1 149539 R 232721 CDS YP_984466.1 121592570 4674714 complement(150871..152175) 1 NC_008782.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, C terminal 152175 4674714 Ajs_0135 Acidovorax sp. JS42 Glu/Leu/Phe/Val dehydrogenase, C terminal YP_984466.1 150871 R 232721 CDS YP_984467.1 121592571 4674612 complement(152356..153273) 1 NC_008782.1 PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344; hypothetical protein 153273 4674612 Ajs_0136 Acidovorax sp. JS42 hypothetical protein YP_984467.1 152356 R 232721 CDS YP_984468.1 121592572 4674572 complement(153303..154226) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mfa:Mfla_0402 transcriptional regulator, LysR family; LysR family transcriptional regulator 154226 4674572 Ajs_0137 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984468.1 153303 R 232721 CDS YP_984469.1 121592573 4674528 154298..154786 1 NC_008782.1 PFAM: transmembrane pair domain protein; KEGG: bte:BTH_II1937 hypothetical protein; transmembrane pair domain-containing protein 154786 4674528 Ajs_0138 Acidovorax sp. JS42 transmembrane pair domain-containing protein YP_984469.1 154298 D 232721 CDS YP_984470.1 121592574 4674498 complement(154831..155757) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bam:Bamb_5949 transcriptional regulator, LysR family; LysR family transcriptional regulator 155757 4674498 Ajs_0139 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984470.1 154831 R 232721 CDS YP_984471.1 121592575 4674438 155906..157108 1 NC_008782.1 KEGG: reu:Reut_B4400 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerases 157108 4674438 Ajs_0140 Acidovorax sp. JS42 muconate and chloromuconate cycloisomerases YP_984471.1 155906 D 232721 CDS YP_984472.1 121592576 4674368 157137..157433 1 NC_008782.1 PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase; muconolactone delta-isomerase 157433 4674368 Ajs_0141 Acidovorax sp. JS42 muconolactone delta-isomerase YP_984472.1 157137 D 232721 CDS YP_984473.1 121592577 4674315 157479..158402 1 NC_008782.1 PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 158402 4674315 Ajs_0142 Acidovorax sp. JS42 intradiol ring-cleavage dioxygenase YP_984473.1 157479 D 232721 CDS YP_984474.1 121592578 4674266 158429..159421 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065; hypothetical protein 159421 4674266 Ajs_0143 Acidovorax sp. JS42 hypothetical protein YP_984474.1 158429 D 232721 CDS YP_984475.1 121592579 4674242 complement(159508..160920) 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 160920 4674242 Ajs_0144 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_984475.1 159508 R 232721 CDS YP_984476.1 121592580 4674230 complement(160964..161578) 1 NC_008782.1 KEGG: eba:ebA1198 iron-sulfur subunit of cytochrome bc1; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 161578 4674230 Ajs_0145 Acidovorax sp. JS42 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_984476.1 160964 R 232721 CDS YP_984477.1 121592581 4674197 161755..163134 1 NC_008782.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_B0676 sigma54 specific transcriptional regulator with PAS sensor, fis family; sigma-54 dependent trancsriptional regulator 163134 4674197 Ajs_0146 Acidovorax sp. JS42 sigma-54 dependent trancsriptional regulator YP_984477.1 161755 D 232721 CDS YP_984478.1 121592582 4673292 163503..166241 1 NC_008782.1 KEGG: rfr:Rfer_0466 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase 166241 4673292 Ajs_0147 Acidovorax sp. JS42 methionine synthase YP_984478.1 163503 D 232721 CDS YP_984479.1 121592583 4673238 166277..167878 1 NC_008782.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rme:Rmet_3815 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein 167878 4673238 Ajs_0148 Acidovorax sp. JS42 peptidoglycan-binding domain-containing protein YP_984479.1 166277 D 232721 CDS YP_984480.1 121592584 4673230 167912..168484 1 NC_008782.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: reu:Reut_B3941 twin-arginine translocation pathway signal; hypothetical protein 168484 4673230 Ajs_0149 Acidovorax sp. JS42 hypothetical protein YP_984480.1 167912 D 232721 CDS YP_984481.1 121592585 4672684 complement(168554..169090) 1 NC_008782.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 169090 aroK 4672684 aroK Acidovorax sp. JS42 shikimate kinase YP_984481.1 168554 R 232721 CDS YP_984482.1 121592586 4672671 169220..170137 1 NC_008782.1 PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN; ribonuclease BN 170137 4672671 Ajs_0151 Acidovorax sp. JS42 ribonuclease BN YP_984482.1 169220 D 232721 CDS YP_984483.1 121592587 4672572 170221..171105 1 NC_008782.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_0175 17 kDa surface antigen; 17 kDa surface antigen 171105 4672572 Ajs_0152 Acidovorax sp. JS42 17 kDa surface antigen YP_984483.1 170221 D 232721 CDS YP_984484.1 121592588 4671964 complement(171275..172048) 1 NC_008782.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0084 ferredoxin--NADP(+) reductase; ferredoxin--NADP(+) reductase 172048 4671964 Ajs_0153 Acidovorax sp. JS42 ferredoxin--NADP(+) reductase YP_984484.1 171275 R 232721 CDS YP_984485.1 121592589 4671426 172308..173495 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4064 extracellular ligand-binding receptor; extracellular ligand-binding receptor 173495 4671426 Ajs_0154 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_984485.1 172308 D 232721 CDS YP_984486.1 121592590 4671351 173568..175535 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_4063 inner-membrane translocator; inner-membrane translocator 175535 4671351 Ajs_0155 Acidovorax sp. JS42 inner-membrane translocator YP_984486.1 173568 D 232721 CDS YP_984487.1 121592591 4671296 175532..176290 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4062 ABC transporter related; ABC transporter-like protein 176290 4671296 Ajs_0156 Acidovorax sp. JS42 ABC transporter-like protein YP_984487.1 175532 D 232721 CDS YP_984488.1 121592592 4671217 176287..177066 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4061 ABC transporter related; ABC transporter-like protein 177066 4671217 Ajs_0157 Acidovorax sp. JS42 ABC transporter-like protein YP_984488.1 176287 D 232721 CDS YP_984489.1 121592593 4670610 complement(177097..178014) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0910 transcriptional regulator, LysR family; LysR family transcriptional regulator 178014 4670610 Ajs_0158 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984489.1 177097 R 232721 CDS YP_984490.1 121592594 4670633 178123..178932 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc1730 probable dehydrogenase/reductase oxidoreductase protein; short-chain dehydrogenase/reductase SDR 178932 4670633 Ajs_0159 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984490.1 178123 D 232721 CDS YP_984491.1 121592595 4670638 complement(179061..180800) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rme:Rmet_5612 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 180800 4670638 Ajs_0160 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_984491.1 179061 R 232721 CDS YP_984492.1 121592596 4670642 complement(180846..182384) 1 NC_008782.1 KEGG: rfr:Rfer_0471 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 182384 4670642 Ajs_0161 Acidovorax sp. JS42 Mg chelatase subunit ChlI YP_984492.1 180846 R 232721 CDS YP_984493.1 121592597 4670658 182604..183335 1 NC_008782.1 KEGG: pol:Bpro_0182 hypothetical protein; hypothetical protein 183335 4670658 Ajs_0162 Acidovorax sp. JS42 hypothetical protein YP_984493.1 182604 D 232721 CDS YP_984494.1 121592598 4670671 183356..183694 1 NC_008782.1 PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_0472 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 183694 4670671 Ajs_0163 Acidovorax sp. JS42 nitrogen regulatory protein P-II YP_984494.1 183356 D 232721 CDS YP_984495.1 121592599 4670677 183741..185168 1 NC_008782.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rfr:Rfer_0473 ammonium transporter; ammonium transporter 185168 4670677 Ajs_0164 Acidovorax sp. JS42 ammonium transporter YP_984495.1 183741 D 232721 CDS YP_984496.1 121592600 4670681 185308..186258 1 NC_008782.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rfr:Rfer_0479 senescence marker protein-30 (SMP-30); gluconolactonase 186258 4670681 Ajs_0165 Acidovorax sp. JS42 gluconolactonase YP_984496.1 185308 D 232721 CDS YP_984497.1 121592601 4670696 186362..187471 1 NC_008782.1 PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 187471 4670696 Ajs_0166 Acidovorax sp. JS42 FAD linked oxidase domain-containing protein YP_984497.1 186362 D 232721 CDS YP_984498.1 121592602 4670697 187474..188271 1 NC_008782.1 PFAM: protein of unknown function DUF1275; KEGG: rso:RS00757 probable transmembrane protein; hypothetical protein 188271 4670697 Ajs_0167 Acidovorax sp. JS42 hypothetical protein YP_984498.1 187474 D 232721 CDS YP_984499.1 121592603 4670738 188297..189535 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region; glycolate oxidase iron-sulfur subunit 189535 glcF 4670738 glcF Acidovorax sp. JS42 glycolate oxidase iron-sulfur subunit YP_984499.1 188297 D 232721 CDS YP_984500.1 121592604 4670748 189597..190466 1 NC_008782.1 PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein; ProQ activator of osmoprotectant transporter ProP 190466 4670748 Ajs_0169 Acidovorax sp. JS42 ProQ activator of osmoprotectant transporter ProP YP_984500.1 189597 D 232721 CDS YP_984501.1 121592605 4670776 190545..190955 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A4004 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 190955 4670776 Ajs_0170 Acidovorax sp. JS42 glyoxalase/bleomycin resistance protein/dioxygenase YP_984501.1 190545 D 232721 CDS YP_984502.1 121592606 4670789 191048..191518 1 NC_008782.1 PFAM: transcription activator, effector binding; KEGG: pfl:PFL_3410 hypothetical protein; transcription activator 191518 4670789 Ajs_0171 Acidovorax sp. JS42 transcription activator YP_984502.1 191048 D 232721 CDS YP_984503.1 121592607 4670799 191596..192324 1 NC_008782.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: rso:RSc2673 putative repressor transcription regulator protein; helix-turn-helix, type 11 domain-containing protein 192324 4670799 Ajs_0172 Acidovorax sp. JS42 helix-turn-helix, type 11 domain-containing protein YP_984503.1 191596 D 232721 CDS YP_984504.1 121592608 4670817 complement(192555..193040) 1 NC_008782.1 PFAM: glutathione peroxidase; KEGG: rfr:Rfer_0484 glutathione peroxidase; glutathione peroxidase 193040 4670817 Ajs_0173 Acidovorax sp. JS42 glutathione peroxidase YP_984504.1 192555 R 232721 CDS YP_984505.1 121592609 4670856 complement(193037..193978) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_0486 protein of unknown function DUF6, transmembrane; hypothetical protein 193978 4670856 Ajs_0174 Acidovorax sp. JS42 hypothetical protein YP_984505.1 193037 R 232721 CDS YP_984506.1 121592610 4670874 complement(194129..195406) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1; lysophospholipid transporter LplT 195406 4670874 Ajs_0175 Acidovorax sp. JS42 lysophospholipid transporter LplT YP_984506.1 194129 R 232721 CDS YP_984507.1 121592611 4670888 195547..196644 1 NC_008782.1 KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 196644 4670888 Ajs_0176 Acidovorax sp. JS42 alanine racemase YP_984507.1 195547 D 232721 CDS YP_984508.1 121592612 4670900 196653..197204 1 NC_008782.1 KEGG: bma:BMAA0623 hypothetical protein; hypothetical protein 197204 4670900 Ajs_0177 Acidovorax sp. JS42 hypothetical protein YP_984508.1 196653 D 232721 CDS YP_984509.1 121592613 4670919 complement(197107..197721) 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sme:SMc00036 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein 197721 4670919 Ajs_0178 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_984509.1 197107 R 232721 CDS YP_984510.1 121592614 4670931 complement(197869..198051) 1 NC_008782.1 hypothetical protein 198051 4670931 Ajs_0179 Acidovorax sp. JS42 hypothetical protein YP_984510.1 197869 R 232721 CDS YP_984511.1 121592615 4670952 198161..199543 1 NC_008782.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 199543 4670952 Ajs_0180 Acidovorax sp. JS42 DNA repair protein RadA YP_984511.1 198161 D 232721 CDS YP_984512.1 121592616 4670955 199613..200053 1 NC_008782.1 KEGG: pol:Bpro_0202 hypothetical protein; hypothetical protein 200053 4670955 Ajs_0181 Acidovorax sp. JS42 hypothetical protein YP_984512.1 199613 D 232721 CDS YP_984513.1 121592617 4670962 200100..201038 1 NC_008782.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 201038 4670962 Ajs_0182 Acidovorax sp. JS42 branched-chain amino acid aminotransferase YP_984513.1 200100 D 232721 CDS YP_984514.1 121592618 4670980 201043..201249 1 NC_008782.1 KEGG: rfr:Rfer_0507 hypothetical protein; hypothetical protein 201249 4670980 Ajs_0183 Acidovorax sp. JS42 hypothetical protein YP_984514.1 201043 D 232721 CDS YP_984515.1 121592619 4670986 201358..202665 1 NC_008782.1 PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein; O-antigen polymerase 202665 4670986 Ajs_0184 Acidovorax sp. JS42 O-antigen polymerase YP_984515.1 201358 D 232721 CDS YP_984516.1 121592620 4670999 202674..203831 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: sth:STH1101 glycosyl transferase; group 1 glycosyl transferase 203831 4670999 Ajs_0185 Acidovorax sp. JS42 group 1 glycosyl transferase YP_984516.1 202674 D 232721 CDS YP_984517.1 121592621 4671013 203828..204874 1 NC_008782.1 PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5093 glycosyl transferase; glycosyl transferase family protein 204874 4671013 Ajs_0186 Acidovorax sp. JS42 glycosyl transferase family protein YP_984517.1 203828 D 232721 CDS YP_984518.1 121592622 4671018 204871..205848 1 NC_008782.1 KEGG: mmr:Mmar10_2764 hypothetical protein; hypothetical protein 205848 4671018 Ajs_0187 Acidovorax sp. JS42 hypothetical protein YP_984518.1 204871 D 232721 CDS YP_984519.1 121592623 4671032 complement(205909..206973) 1 NC_008782.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bcn:Bcen_2830 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 206973 4671032 Ajs_0188 Acidovorax sp. JS42 2-nitropropane dioxygenase YP_984519.1 205909 R 232721 CDS YP_984520.1 121592624 4671046 complement(206978..207880) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pae:PA4203 probable transcriptional regulator; LysR family transcriptional regulator 207880 4671046 Ajs_0189 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984520.1 206978 R 232721 CDS YP_984521.1 121592625 4671079 207960..209228 1 NC_008782.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228; hypothetical protein 209228 4671079 Ajs_0190 Acidovorax sp. JS42 hypothetical protein YP_984521.1 207960 D 232721 CDS YP_984522.1 121592626 4671123 complement(209236..209964) 1 NC_008782.1 PFAM: MOSC domain containing protein; KEGG: pae:PA2229 hypothetical protein; MOSC domain-containing protein 209964 4671123 Ajs_0191 Acidovorax sp. JS42 MOSC domain-containing protein YP_984522.1 209236 R 232721 CDS YP_984523.1 121592627 4674170 complement(209961..210524) 1 NC_008782.1 KEGG: bbr:BB2475 hypothetical protein; hypothetical protein 210524 4674170 Ajs_0192 Acidovorax sp. JS42 hypothetical protein YP_984523.1 209961 R 232721 CDS YP_984524.1 121592628 4671314 complement(210609..211889) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0509 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 211889 4671314 Ajs_0193 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_984524.1 210609 R 232721 CDS YP_984525.1 121592629 4671864 complement(211864..212619) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0510 two component transcriptional regulator, winged helix family; two component transcriptional regulator 212619 4671864 Ajs_0194 Acidovorax sp. JS42 two component transcriptional regulator YP_984525.1 211864 R 232721 CDS YP_984526.1 121592630 4671883 212784..213425 1 NC_008782.1 KEGG: cte:CT1159 type III restriction system methylase; type III restriction system methylase 213425 4671883 Ajs_0195 Acidovorax sp. JS42 type III restriction system methylase YP_984526.1 212784 D 232721 CDS YP_984527.1 121592631 4671516 213422..214288 1 NC_008782.1 KEGG: cch:Cag_1524 DNA-damage-inducible protein D; DNA-damage-inducible protein D 214288 dinD 4671516 dinD Acidovorax sp. JS42 DNA-damage-inducible protein D YP_984527.1 213422 D 232721 CDS YP_984528.1 121592632 4671536 214296..215984 1 NC_008782.1 PFAM: Eco57I restriction endonuclease; KEGG: cte:CT1160 type III restriction system endonuclease, putative; Eco57I restriction endonuclease 215984 4671536 Ajs_0197 Acidovorax sp. JS42 Eco57I restriction endonuclease YP_984528.1 214296 D 232721 CDS YP_984529.1 121592633 4671555 215965..218511 1 NC_008782.1 KEGG: dge:Dgeo_0923 type III restriction system endonuclease, putative; type III restriction system endonuclease 218511 4671555 Ajs_0198 Acidovorax sp. JS42 type III restriction system endonuclease YP_984529.1 215965 D 232721 CDS YP_984530.1 121592634 4671556 complement(218549..219892) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0516 major facilitator superfamily MFS_1; major facilitator superfamily transporter 219892 4671556 Ajs_0199 Acidovorax sp. JS42 major facilitator superfamily transporter YP_984530.1 218549 R 232721 CDS YP_984531.1 121592635 4671561 219954..220655 1 NC_008782.1 PFAM: Cupin 2, conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: pol:Bpro_0312 transcriptional regulator, AraC family; AraC family transcriptional regulator 220655 4671561 Ajs_0200 Acidovorax sp. JS42 AraC family transcriptional regulator YP_984531.1 219954 D 232721 CDS YP_984532.1 121592636 4671576 220754..221659 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_3308 possible transporter, DME family, DMT superfamily; hypothetical protein 221659 4671576 Ajs_0201 Acidovorax sp. JS42 hypothetical protein YP_984532.1 220754 D 232721 CDS YP_984533.1 121592637 4671591 221756..222103 1 NC_008782.1 KEGG: reu:Reut_A2446 probable signal peptide protein; hypothetical protein 222103 4671591 Ajs_0202 Acidovorax sp. JS42 hypothetical protein YP_984533.1 221756 D 232721 CDS YP_984534.1 121592638 4671596 222189..223064 1 NC_008782.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p; peptidase M48, Ste24p 223064 4671596 Ajs_0203 Acidovorax sp. JS42 peptidase M48, Ste24p YP_984534.1 222189 D 232721 CDS YP_984535.1 121592639 4671193 complement(223101..223889) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bur:Bcep18194_B2973 transcriptional regulator, GntR family; GntR family transcriptional regulator 223889 4671193 Ajs_0204 Acidovorax sp. JS42 GntR family transcriptional regulator YP_984535.1 223101 R 232721 CDS YP_984536.1 121592640 4671621 complement(223914..225614) 1 NC_008782.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: bur:Bcep18194_B2972 sigma54 specific transcriptional regulator with PAS sensor, fis family; sigma-54 dependent trancsriptional regulator 225614 4671621 Ajs_0205 Acidovorax sp. JS42 sigma-54 dependent trancsriptional regulator YP_984536.1 223914 R 232721 CDS YP_984537.1 121592641 4671637 225908..226123 1 NC_008782.1 PFAM: Phenol hydroxylase subunit; KEGG: dar:Daro_3797 phenol hydroxylase subunit; phenol hydroxylase subunit 226123 4671637 Ajs_0206 Acidovorax sp. JS42 phenol hydroxylase subunit YP_984537.1 225908 D 232721 CDS YP_984538.1 121592642 4671642 226170..227165 1 NC_008782.1 PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase; methane/phenol/toluene hydroxylase 227165 4671642 Ajs_0207 Acidovorax sp. JS42 methane/phenol/toluene hydroxylase YP_984538.1 226170 D 232721 CDS YP_984539.1 121592643 4671653 227191..227460 1 NC_008782.1 PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM 227460 4671653 Ajs_0208 Acidovorax sp. JS42 monooxygenase component MmoB/DmpM YP_984539.1 227191 D 232721 CDS YP_984540.1 121592644 4671661 227485..229029 1 NC_008782.1 PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS; methane/phenol/toluene hydroxylase 229029 4671661 Ajs_0209 Acidovorax sp. JS42 methane/phenol/toluene hydroxylase YP_984540.1 227485 D 232721 CDS YP_984541.1 121592645 4671668 229026..229382 1 NC_008782.1 PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1327 phenol hydroxylase conserved region; phenol hydroxylase region 229382 4671668 Ajs_0210 Acidovorax sp. JS42 phenol hydroxylase region YP_984541.1 229026 D 232721 CDS YP_984542.1 121592646 4671687 229390..230451 1 NC_008782.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: reu:Reut_B5685 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; FAD/NAD(P)-binding oxidoreductase subunit 230451 4671687 Ajs_0211 Acidovorax sp. JS42 FAD/NAD(P)-binding oxidoreductase subunit YP_984542.1 229390 D 232721 CDS YP_984543.1 121592647 4671691 complement(230438..231358) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 231358 4671691 Ajs_0212 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984543.1 230438 R 232721 CDS YP_984544.1 121592648 4671701 231485..231856 1 NC_008782.1 PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin; ferredoxin 231856 4671701 Ajs_0213 Acidovorax sp. JS42 ferredoxin YP_984544.1 231485 D 232721 CDS YP_984545.1 121592649 4671718 231878..232822 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase; catechol 2,3-dioxygenase 232822 4671718 Ajs_0214 Acidovorax sp. JS42 catechol 2,3-dioxygenase YP_984545.1 231878 D 232721 CDS YP_984546.1 121592650 4671729 complement(233776..234681) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 234681 4671729 Ajs_0216 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984546.1 233776 R 232721 CDS YP_984547.1 121592651 4671741 234952..235287 1 NC_008782.1 PFAM: ferredoxin; KEGG: dar:Daro_3791 ferredoxin; ferredoxin 235287 4671741 Ajs_0217 Acidovorax sp. JS42 ferredoxin YP_984547.1 234952 D 232721 CDS YP_984548.1 121592652 4671751 235310..236221 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dar:Daro_3789 glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase 236221 4671751 Ajs_0218 Acidovorax sp. JS42 catechol 2,3-dioxygenase YP_984548.1 235310 D 232721 CDS YP_984549.1 121592653 4671756 236236..236667 1 NC_008782.1 PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 protein of unknown function DUF336; hypothetical protein 236667 4671756 Ajs_0219 Acidovorax sp. JS42 hypothetical protein YP_984549.1 236236 D 232721 CDS YP_984550.1 121592654 4671771 236730..238190 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 238190 4671771 Ajs_0220 Acidovorax sp. JS42 betaine-aldehyde dehydrogenase YP_984550.1 236730 D 232721 CDS YP_984551.1 121592655 4671774 238264..239124 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1331 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 239124 4671774 Ajs_0221 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_984551.1 238264 D 232721 CDS YP_984552.1 121592656 4671812 239166..239954 1 NC_008782.1 PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_3785 hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 239954 4671812 Ajs_0222 Acidovorax sp. JS42 4-oxalocrotonate decarboxylase YP_984552.1 239166 D 232721 CDS YP_984553.1 121592657 4671510 239969..240877 1 NC_008782.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 240877 4671510 Ajs_0223 Acidovorax sp. JS42 acetaldehyde dehydrogenase YP_984553.1 239969 D 232721 CDS YP_984554.1 121592658 4674386 240899..241927 1 NC_008782.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 241927 4674386 Ajs_0224 Acidovorax sp. JS42 4-hydroxy-2-ketovalerate aldolase YP_984554.1 240899 D 232721 CDS YP_984555.1 121592659 4671876 241942..242730 1 NC_008782.1 PFAM: Hydratase/decarboxylase; KEGG: rme:Rmet_1318 hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 242730 4671876 Ajs_0225 Acidovorax sp. JS42 4-oxalocrotonate decarboxylase YP_984555.1 241942 D 232721 CDS YP_984556.1 121592660 4672498 242785..243768 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1999 hypothetical protein; hypothetical protein 243768 4672498 Ajs_0226 Acidovorax sp. JS42 hypothetical protein YP_984556.1 242785 D 232721 CDS YP_984557.1 121592661 4672579 243788..243979 1 NC_008782.1 TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 243979 4672579 Ajs_0227 Acidovorax sp. JS42 4-oxalocrotonate tautomerase YP_984557.1 243788 D 232721 CDS YP_984558.1 121592662 4672059 complement(244055..244693) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_0167 beta-lactamase-like; beta-lactamase domain-containing protein 244693 4672059 Ajs_0228 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_984558.1 244055 R 232721 CDS YP_984559.1 121592663 4672069 complement(244796..245494) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; KEGG: reu:Reut_B4629 regulatory protein GntR, HTH; GntR family transcriptional regulator 245494 4672069 Ajs_0229 Acidovorax sp. JS42 GntR family transcriptional regulator YP_984559.1 244796 R 232721 CDS YP_984560.1 121592664 4672088 245619..246818 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_35970 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 246818 4672088 Ajs_0230 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984560.1 245619 D 232721 CDS YP_984561.1 121592665 4672092 246821..247597 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ppu:PP_2794 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 247597 4672092 Ajs_0231 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984561.1 246821 D 232721 CDS YP_984562.1 121592666 4672100 247594..248634 1 NC_008782.1 PFAM: aminoglycoside phosphotransferase; KEGG: reu:Reut_A1007 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 248634 4672100 Ajs_0232 Acidovorax sp. JS42 aminoglycoside phosphotransferase YP_984562.1 247594 D 232721 CDS YP_984563.1 121592667 4672106 complement(248739..249542) 1 NC_008782.1 KEGG: rfr:Rfer_3929 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 249542 4672106 Ajs_0233 Acidovorax sp. JS42 exodeoxyribonuclease III Xth YP_984563.1 248739 R 232721 CDS YP_984564.1 121592668 4672110 249553..250263 1 NC_008782.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 250263 pyrE 4672110 pyrE Acidovorax sp. JS42 orotate phosphoribosyltransferase YP_984564.1 249553 D 232721 CDS YP_984565.1 121592669 4671843 250296..251012 1 NC_008782.1 KEGG: pol:Bpro_0218 hypothetical protein; hypothetical protein 251012 4671843 Ajs_0235 Acidovorax sp. JS42 hypothetical protein YP_984565.1 250296 D 232721 CDS YP_984566.1 121592670 4672138 complement(251086..252543) 1 NC_008782.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: rfr:Rfer_3926 glutamyl-tRNA(Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 252543 4672138 Ajs_0236 Acidovorax sp. JS42 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B YP_984566.1 251086 R 232721 CDS YP_984567.1 121592671 4672151 complement(252546..254048) 1 NC_008782.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 254048 gatA 4672151 gatA Acidovorax sp. JS42 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_984567.1 252546 R 232721 CDS YP_984568.1 121592672 4672156 complement(254059..254427) 1 NC_008782.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: rfr:Rfer_3924 glutamyl-tRNA(Gln) amidotransferase, C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 254427 4672156 Ajs_0238 Acidovorax sp. JS42 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_984568.1 254059 R 232721 CDS YP_984569.1 121592673 4672163 254564..255607 1 NC_008782.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 255607 4672163 Ajs_0239 Acidovorax sp. JS42 rod shape-determining protein MreB YP_984569.1 254564 D 232721 CDS YP_984570.1 121592674 4672170 255637..256554 1 NC_008782.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 256554 4672170 Ajs_0240 Acidovorax sp. JS42 rod shape-determining protein MreC YP_984570.1 255637 D 232721 CDS YP_984571.1 121592675 4672176 256551..257072 1 NC_008782.1 KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein; putative rod shape-determining MreD transmembrane protein 257072 4672176 Ajs_0241 Acidovorax sp. JS42 putative rod shape-determining MreD transmembrane protein YP_984571.1 256551 D 232721 CDS YP_984572.1 121592676 4672181 257100..259040 1 NC_008782.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 259040 4672181 Ajs_0242 Acidovorax sp. JS42 peptidoglycan glycosyltransferase YP_984572.1 257100 D 232721 CDS YP_984573.1 121592677 4672193 complement(259057..259956) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR2393 hypothetical protein; hypothetical protein 259956 4672193 Ajs_0243 Acidovorax sp. JS42 hypothetical protein YP_984573.1 259057 R 232721 CDS YP_984574.1 121592678 4672201 complement(260089..260841) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0403 ABC transporter related; ABC transporter-like protein 260841 4672201 Ajs_0244 Acidovorax sp. JS42 ABC transporter-like protein YP_984574.1 260089 R 232721 CDS YP_984575.1 121592679 4672211 complement(260838..261620) 1 NC_008782.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 261620 4672211 Ajs_0245 Acidovorax sp. JS42 polar amino acid ABC transporter inner membrane subunit YP_984575.1 260838 R 232721 CDS YP_984576.1 121592680 4672216 complement(261660..262421) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_0401 extracellular solute-binding protein, family 3; extracellular solute-binding protein 262421 4672216 Ajs_0246 Acidovorax sp. JS42 extracellular solute-binding protein YP_984576.1 261660 R 232721 CDS YP_984577.1 121592681 4672223 complement(262587..263507) 1 NC_008782.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_3884 arginase; arginase 263507 4672223 Ajs_0247 Acidovorax sp. JS42 arginase YP_984577.1 262587 R 232721 CDS YP_984578.1 121592682 4672249 complement(263545..264303) 1 NC_008782.1 PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_3919 protein of unknown function DUF81; hypothetical protein 264303 4672249 Ajs_0248 Acidovorax sp. JS42 hypothetical protein YP_984578.1 263545 R 232721 CDS YP_984579.1 121592683 4672265 complement(264603..266312) 1 NC_008782.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_3918 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 266312 4672265 Ajs_0249 Acidovorax sp. JS42 glucose-methanol-choline oxidoreductase YP_984579.1 264603 R 232721 CDS YP_984580.1 121592684 4672278 266634..267752 1 NC_008782.1 PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140; hypothetical protein 267752 4672278 Ajs_0250 Acidovorax sp. JS42 hypothetical protein YP_984580.1 266634 D 232721 CDS YP_984581.1 121592685 4672287 267755..268597 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related; ABC transporter-like protein 268597 4672287 Ajs_0251 Acidovorax sp. JS42 ABC transporter-like protein YP_984581.1 267755 D 232721 CDS YP_984582.1 121592686 4672300 268597..269574 1 NC_008782.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related; hypothetical protein 269574 4672300 Ajs_0252 Acidovorax sp. JS42 hypothetical protein YP_984582.1 268597 D 232721 CDS YP_984583.1 121592687 4672308 269592..270269 1 NC_008782.1 KEGG: pol:Bpro_0233 putative lipoprotein; putative lipoprotein 270269 4672308 Ajs_0253 Acidovorax sp. JS42 putative lipoprotein YP_984583.1 269592 D 232721 CDS YP_984584.1 121592688 4672315 270514..270729 1 NC_008782.1 PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; CsbD family protein 270729 4672315 Ajs_0254 Acidovorax sp. JS42 CsbD family protein YP_984584.1 270514 D 232721 CDS YP_984585.1 121592689 4672322 270806..271384 1 NC_008782.1 KEGG: pol:Bpro_1153 hypothetical protein; hypothetical protein 271384 4672322 Ajs_0255 Acidovorax sp. JS42 hypothetical protein YP_984585.1 270806 D 232721 CDS YP_984586.1 121592690 4672334 271533..272039 1 NC_008782.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_A0820 hypothetical protein; hemerythrin-like metal-binding protein 272039 4672334 Ajs_0256 Acidovorax sp. JS42 hemerythrin-like metal-binding protein YP_984586.1 271533 D 232721 CDS YP_984587.1 121592691 4672336 272219..273151 1 NC_008782.1 KEGG: bxe:Bxe_B2063 putative diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 273151 4672336 Ajs_0257 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase YP_984587.1 272219 D 232721 CDS YP_984588.1 121592692 4672349 complement(273155..273793) 1 NC_008782.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like proteins 273793 4672349 Ajs_0258 Acidovorax sp. JS42 multiple antibiotic resistance (MarC)-like proteins YP_984588.1 273155 R 232721 CDS YP_984589.1 121592693 4672352 complement(273793..274539) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_0239 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 274539 4672352 Ajs_0259 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984589.1 273793 R 232721 CDS YP_984590.1 121592694 4672362 274647..275336 1 NC_008782.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase; carboxymethylenebutenolidase 275336 4672362 Ajs_0260 Acidovorax sp. JS42 carboxymethylenebutenolidase YP_984590.1 274647 D 232721 CDS YP_984591.1 121592695 4672368 complement(275424..276992) 1 NC_008782.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter 276992 4672368 Ajs_0261 Acidovorax sp. JS42 EmrB/QacA family drug resistance transporter YP_984591.1 275424 R 232721 CDS YP_984592.1 121592696 4672385 complement(277003..278220) 1 NC_008782.1 PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD; secretion protein HlyD family protein 278220 4672385 Ajs_0262 Acidovorax sp. JS42 secretion protein HlyD family protein YP_984592.1 277003 R 232721 CDS YP_984593.1 121592697 4672447 complement(278249..279802) 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 279802 4672447 Ajs_0263 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_984593.1 278249 R 232721 CDS YP_984594.1 121592698 4672580 complement(279861..280376) 1 NC_008782.1 PFAM: regulatory protein, MarR; KEGG: rfr:Rfer_1513 transcriptional regulator, MarR family; MarR family transcriptional regulator 280376 4672580 Ajs_0264 Acidovorax sp. JS42 MarR family transcriptional regulator YP_984594.1 279861 R 232721 CDS YP_984595.1 121592699 4673204 complement(280480..281685) 1 NC_008782.1 PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like; Mg2+ transporter protein, CorA family protein 281685 4673204 Ajs_0265 Acidovorax sp. JS42 Mg2+ transporter protein, CorA family protein YP_984595.1 280480 R 232721 CDS YP_984596.1 121592700 4672745 complement(281725..282732) 1 NC_008782.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 282732 4672745 Ajs_0266 Acidovorax sp. JS42 delta-aminolevulinic acid dehydratase YP_984596.1 281725 R 232721 CDS YP_984597.1 121592701 4672621 282893..283606 1 NC_008782.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: rfr:Rfer_3968 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 283606 4672621 Ajs_0267 Acidovorax sp. JS42 biotin/lipoate A/B protein ligase YP_984597.1 282893 D 232721 CDS YP_984598.1 121592702 4672761 283816..284244 1 NC_008782.1 PFAM: conserved hypothetical protein 701; KEGG: rfr:Rfer_3804 conserved hypothetical protein 701; hypothetical protein 284244 4672761 Ajs_0268 Acidovorax sp. JS42 hypothetical protein YP_984598.1 283816 D 232721 CDS YP_984599.1 121592703 4672777 284342..285439 1 NC_008782.1 PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein; VanZ family protein 285439 4672777 Ajs_0269 Acidovorax sp. JS42 VanZ family protein YP_984599.1 284342 D 232721 CDS YP_984600.1 121592704 4672795 285449..285790 1 NC_008782.1 KEGG: pol:Bpro_0248 ferredoxin-like; ferredoxin-like protein 285790 4672795 Ajs_0270 Acidovorax sp. JS42 ferredoxin-like protein YP_984600.1 285449 D 232721 CDS YP_984601.1 121592705 4672529 285862..286521 1 NC_008782.1 KEGG: pol:Bpro_0249 putative transmembrane protein; hypothetical protein 286521 4672529 Ajs_0271 Acidovorax sp. JS42 hypothetical protein YP_984601.1 285862 D 232721 CDS YP_984602.1 121592706 4672832 286601..287764 1 NC_008782.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rfr:Rfer_3801 serine-type D-Ala-D-Ala carboxypeptidase; penicillin-binding protein 6 287764 4672832 Ajs_0272 Acidovorax sp. JS42 penicillin-binding protein 6 YP_984602.1 286601 D 232721 CDS YP_984603.1 121592707 4672835 287915..288292 1 NC_008782.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 288292 rpsL 4672835 rpsL Acidovorax sp. JS42 30S ribosomal protein S12 YP_984603.1 287915 D 232721 CDS YP_984604.1 121592708 4672837 288463..288936 1 NC_008782.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 288936 4672837 Ajs_0274 Acidovorax sp. JS42 30S ribosomal protein S7 YP_984604.1 288463 D 232721 CDS YP_984605.1 121592709 4672842 289094..291202 1 NC_008782.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 291202 4672842 Ajs_0275 Acidovorax sp. JS42 elongation factor G YP_984605.1 289094 D 232721 CDS YP_984606.1 121592710 4672856 291387..292577 1 NC_008782.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 292577 4672856 Ajs_0276 Acidovorax sp. JS42 elongation factor Tu YP_984606.1 291387 D 232721 CDS YP_984607.1 121592711 4672870 292605..292916 1 NC_008782.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 292916 rpsJ 4672870 rpsJ Acidovorax sp. JS42 30S ribosomal protein S10 YP_984607.1 292605 D 232721 CDS YP_984608.1 121592712 4672880 293167..293841 1 NC_008782.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 293841 rplC 4672880 rplC Acidovorax sp. JS42 50S ribosomal protein L3 YP_984608.1 293167 D 232721 CDS YP_984609.1 121592713 4672896 293841..294461 1 NC_008782.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 294461 rplD 4672896 rplD Acidovorax sp. JS42 50S ribosomal protein L4 YP_984609.1 293841 D 232721 CDS YP_984610.1 121592714 4672923 294458..294772 1 NC_008782.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 294772 rplW 4672923 rplW Acidovorax sp. JS42 50S ribosomal protein L23 YP_984610.1 294458 D 232721 CDS YP_984611.1 121592715 4672928 294776..295600 1 NC_008782.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 295600 rplB 4672928 rplB Acidovorax sp. JS42 50S ribosomal protein L2 YP_984611.1 294776 D 232721 CDS YP_984612.1 121592716 4672932 295611..295889 1 NC_008782.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 295889 rpsS 4672932 rpsS Acidovorax sp. JS42 30S ribosomal protein S19 YP_984612.1 295611 D 232721 CDS YP_984613.1 121592717 4672964 295899..296231 1 NC_008782.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 296231 rplV 4672964 rplV Acidovorax sp. JS42 50S ribosomal protein L22 YP_984613.1 295899 D 232721 CDS YP_984614.1 121592718 4672977 296248..297114 1 NC_008782.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 297114 rpsC 4672977 rpsC Acidovorax sp. JS42 30S ribosomal protein S3 YP_984614.1 296248 D 232721 CDS YP_984615.1 121592719 4672985 297117..297533 1 NC_008782.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 297533 rplP 4672985 rplP Acidovorax sp. JS42 50S ribosomal protein L16 YP_984615.1 297117 D 232721 CDS YP_984616.1 121592720 4673000 297545..297742 1 NC_008782.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 297742 4673000 Ajs_0286 Acidovorax sp. JS42 50S ribosomal protein L29 YP_984616.1 297545 D 232721 CDS YP_984617.1 121592721 4673006 297752..298021 1 NC_008782.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 298021 rpsQ 4673006 rpsQ Acidovorax sp. JS42 30S ribosomal protein S17 YP_984617.1 297752 D 232721 CDS YP_984618.1 121592722 4673027 298085..298642 1 NC_008782.1 PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3785 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 298642 4673027 Ajs_0288 Acidovorax sp. JS42 redoxin domain-containing protein YP_984618.1 298085 D 232721 CDS YP_984619.1 121592723 4673043 complement(298786..299301) 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3784 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 299301 4673043 Ajs_0289 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_984619.1 298786 R 232721 CDS YP_984620.1 121592724 4673120 complement(299343..300011) 1 NC_008782.1 PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561; cytochrome B561 300011 4673120 Ajs_0290 Acidovorax sp. JS42 cytochrome B561 YP_984620.1 299343 R 232721 CDS YP_984621.1 121592725 4673107 300192..300653 1 NC_008782.1 PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II; class II cytochrome c 300653 4673107 Ajs_0291 Acidovorax sp. JS42 class II cytochrome c YP_984621.1 300192 D 232721 CDS YP_984622.1 121592726 4673852 complement(300749..301252) 1 NC_008782.1 PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein; redoxin domain-containing protein 301252 4673852 Ajs_0292 Acidovorax sp. JS42 redoxin domain-containing protein YP_984622.1 300749 R 232721 CDS YP_984623.1 121592727 4673975 301505..302068 1 NC_008782.1 KEGG: pol:Bpro_0295 hypothetical protein; hypothetical protein 302068 4673975 Ajs_0293 Acidovorax sp. JS42 hypothetical protein YP_984623.1 301505 D 232721 CDS YP_984624.1 121592728 4673333 302065..303303 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1; major facilitator superfamily transporter 303303 4673333 Ajs_0294 Acidovorax sp. JS42 major facilitator superfamily transporter YP_984624.1 302065 D 232721 CDS YP_984625.1 121592729 4673347 303300..303749 1 NC_008782.1 PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 303749 4673347 Ajs_0295 Acidovorax sp. JS42 PTS system fructose subfamily transporter subunit IIA YP_984625.1 303300 D 232721 CDS YP_984626.1 121592730 4673353 303718..303987 1 NC_008782.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 303987 4673353 Ajs_0296 Acidovorax sp. JS42 phosphotransferase system, phosphocarrier protein HPr YP_984626.1 303718 D 232721 CDS YP_984627.1 121592731 4673360 304006..305775 1 NC_008782.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate--protein phosphotransferase 305775 4673360 Ajs_0297 Acidovorax sp. JS42 phosphoenolpyruvate--protein phosphotransferase YP_984627.1 304006 D 232721 CDS YP_984628.1 121592732 4673366 complement(305847..306827) 1 NC_008782.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 306827 4673366 Ajs_0298 Acidovorax sp. JS42 lipoyl synthase YP_984628.1 305847 R 232721 CDS YP_984629.1 121592733 4673152 complement(306845..307525) 1 NC_008782.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 307525 4673152 Ajs_0299 Acidovorax sp. JS42 lipoate-protein ligase B YP_984629.1 306845 R 232721 CDS YP_984630.1 121592734 4673383 complement(307549..307845) 1 NC_008782.1 PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493; hypothetical protein 307845 4673383 Ajs_0300 Acidovorax sp. JS42 hypothetical protein YP_984630.1 307549 R 232721 CDS YP_984631.1 121592735 4673387 308086..308574 1 NC_008782.1 KEGG: rfr:Rfer_0113 putative ATP synthase protein I; putative ATP synthase protein I 308574 4673387 Ajs_0301 Acidovorax sp. JS42 putative ATP synthase protein I YP_984631.1 308086 D 232721 CDS YP_984632.1 121592736 4673390 308597..309460 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 309460 4673390 Ajs_0302 Acidovorax sp. JS42 F0F1 ATP synthase subunit A YP_984632.1 308597 D 232721 CDS YP_984633.1 121592737 4672715 309512..309760 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 309760 4672715 Ajs_0303 Acidovorax sp. JS42 F0F1 ATP synthase subunit C YP_984633.1 309512 D 232721 CDS YP_984634.1 121592738 4673421 309796..310266 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 310266 4673421 Ajs_0304 Acidovorax sp. JS42 F0F1 ATP synthase subunit B YP_984634.1 309796 D 232721 CDS YP_984635.1 121592739 4673434 310278..310820 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 310820 4673434 Ajs_0305 Acidovorax sp. JS42 F0F1 ATP synthase subunit delta YP_984635.1 310278 D 232721 CDS YP_984636.1 121592740 4673441 310867..312426 1 NC_008782.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 312426 4673441 Ajs_0306 Acidovorax sp. JS42 F0F1 ATP synthase subunit alpha YP_984636.1 310867 D 232721 CDS YP_984637.1 121592741 4673460 312445..313311 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 313311 4673460 Ajs_0307 Acidovorax sp. JS42 F0F1 ATP synthase subunit gamma YP_984637.1 312445 D 232721 CDS YP_984638.1 121592742 4673473 313354..314760 1 NC_008782.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 314760 4673473 Ajs_0308 Acidovorax sp. JS42 F0F1 ATP synthase subunit beta YP_984638.1 313354 D 232721 CDS YP_984639.1 121592743 4673492 314836..315252 1 NC_008782.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 315252 atpC 4673492 atpC Acidovorax sp. JS42 F0F1 ATP synthase subunit epsilon YP_984639.1 314836 D 232721 CDS YP_984640.1 121592744 4673522 315383..316483 1 NC_008782.1 KEGG: ppu:PP_1106 putative mRNA 3-end processing factor; putative mRNA 3-end processing factor 316483 4673522 Ajs_0310 Acidovorax sp. JS42 putative mRNA 3-end processing factor YP_984640.1 315383 D 232721 CDS YP_984641.1 121592745 4673526 316483..318162 1 NC_008782.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 318162 4673526 Ajs_0311 Acidovorax sp. JS42 ATP-dependent DNA ligase YP_984641.1 316483 D 232721 CDS YP_984642.1 121592746 4673529 318254..321166 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: reu:Reut_A1853 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase domain-containing protein 321166 4673529 Ajs_0312 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_984642.1 318254 D 232721 CDS YP_984643.1 121592747 4673537 321170..321844 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: reu:Reut_A1852 hypothetical protein; metallophosphoesterase 321844 4673537 Ajs_0313 Acidovorax sp. JS42 metallophosphoesterase YP_984643.1 321170 D 232721 CDS YP_984644.1 121592748 4673550 complement(321893..322444) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477; hypothetical protein 322444 4673550 Ajs_0314 Acidovorax sp. JS42 hypothetical protein YP_984644.1 321893 R 232721 CDS YP_984645.1 121592749 4673560 complement(322470..323372) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: rfr:Rfer_0103 protein of unknown function DUF477; hypothetical protein 323372 4673560 Ajs_0315 Acidovorax sp. JS42 hypothetical protein YP_984645.1 322470 R 232721 CDS YP_984646.1 121592750 4673588 complement(323394..323999) 1 NC_008782.1 PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA; LemA family protein 323999 4673588 Ajs_0316 Acidovorax sp. JS42 LemA family protein YP_984646.1 323394 R 232721 CDS YP_984647.1 121592751 4673593 324144..324593 1 NC_008782.1 KEGG: pol:Bpro_0333 hypothetical protein; hypothetical protein 324593 4673593 Ajs_0317 Acidovorax sp. JS42 hypothetical protein YP_984647.1 324144 D 232721 CDS YP_984648.1 121592752 4673615 324666..325670 1 NC_008782.1 KEGG: rpe:RPE_0805 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 325670 4673615 Ajs_0318 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_984648.1 324666 D 232721 CDS YP_984649.1 121592753 4673619 325711..326250 1 NC_008782.1 KEGG: rfr:Rfer_0100 hypothetical protein; hypothetical protein 326250 4673619 Ajs_0319 Acidovorax sp. JS42 hypothetical protein YP_984649.1 325711 D 232721 CDS YP_984650.1 121592754 4673639 complement(326330..326872) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: rfr:Rfer_0208 cytochrome c, class I; class I cytochrome c 326872 4673639 Ajs_0320 Acidovorax sp. JS42 class I cytochrome c YP_984650.1 326330 R 232721 CDS YP_984651.1 121592755 4673650 complement(326993..328435) 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 328435 4673650 Ajs_0321 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_984651.1 326993 R 232721 CDS YP_984652.1 121592756 4673660 complement(331633..332934) 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_2066 secretion protein HlyD; RND family efflux transporter MFP subunit 332934 4673660 Ajs_0323 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_984652.1 331633 R 232721 CDS YP_984653.1 121592757 4673674 333098..333709 1 NC_008782.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family; TetR family transcriptional regulator 333709 4673674 Ajs_0324 Acidovorax sp. JS42 TetR family transcriptional regulator YP_984653.1 333098 D 232721 CDS YP_984654.1 121592758 4673697 complement(334076..334849) 1 NC_008782.1 PFAM: regulatory proteins, IclR; KEGG: mfa:Mfla_2558 transcriptional regulator, IclR family; regulatory proteins, IclR 334849 4673697 Ajs_0325 Acidovorax sp. JS42 regulatory proteins, IclR YP_984654.1 334076 R 232721 CDS YP_984655.1 121592759 4673722 335273..336499 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 336499 4673722 Ajs_0326 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_984655.1 335273 D 232721 CDS YP_984656.1 121592760 4673730 336684..337814 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_2557 secretion protein HlyD; RND family efflux transporter MFP subunit 337814 4673730 Ajs_0327 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_984656.1 336684 D 232721 CDS YP_984657.1 121592761 4673830 337825..340977 1 NC_008782.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pau:PA14_05540 RND multidrug efflux transporter MexB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 340977 4673830 Ajs_0328 Acidovorax sp. JS42 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_984657.1 337825 D 232721 CDS YP_984658.1 121592762 4673971 340974..342392 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_2142 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 342392 4673971 Ajs_0329 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_984658.1 340974 D 232721 CDS YP_984659.1 121592763 4674011 342477..343154 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 343154 4674011 Ajs_0330 Acidovorax sp. JS42 HAD family hydrolase YP_984659.1 342477 D 232721 CDS YP_984660.1 121592764 4674671 343428..343760 1 NC_008782.1 KEGG: pol:Bpro_1739 hypothetical protein; hypothetical protein 343760 4674671 Ajs_0331 Acidovorax sp. JS42 hypothetical protein YP_984660.1 343428 D 232721 CDS YP_984661.1 121592765 4674559 343972..344433 1 NC_008782.1 hypothetical protein 344433 4674559 Ajs_0332 Acidovorax sp. JS42 hypothetical protein YP_984661.1 343972 D 232721 CDS YP_984662.1 121592766 4674436 344497..344736 1 NC_008782.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mfa:Mfla_1441 alcohol dehydrogenase GroES-like protein; alcohol dehydrogenase 344736 4674436 Ajs_0333 Acidovorax sp. JS42 alcohol dehydrogenase YP_984662.1 344497 D 232721 CDS YP_984663.1 121592767 4674313 complement(344886..345395) 1 NC_008782.1 KEGG: reu:Reut_B4919 putative outer membrane protein; putative outer membrane protein 345395 4674313 Ajs_0334 Acidovorax sp. JS42 putative outer membrane protein YP_984663.1 344886 R 232721 CDS YP_984664.1 121592768 4674231 complement(345522..346289) 1 NC_008782.1 PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II; class-II glutamine amidotransferase 346289 4674231 Ajs_0335 Acidovorax sp. JS42 class-II glutamine amidotransferase YP_984664.1 345522 R 232721 CDS YP_984665.1 121592769 4674186 complement(346323..346511) 1 NC_008782.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 346511 4674186 Ajs_0336 Acidovorax sp. JS42 4-oxalocrotonate tautomerase YP_984665.1 346323 R 232721 CDS YP_984666.1 121592770 4673712 complement(346535..346771) 1 NC_008782.1 KEGG: psb:Psyr_3980 hypothetical protein; hypothetical protein 346771 4673712 Ajs_0337 Acidovorax sp. JS42 hypothetical protein YP_984666.1 346535 R 232721 CDS YP_984667.1 121592771 4673671 complement(346878..349079) 1 NC_008782.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 349079 4673671 Ajs_0338 Acidovorax sp. JS42 malate synthase G YP_984667.1 346878 R 232721 CDS YP_984668.1 121592772 4673289 349308..350246 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family; LysR family transcriptional regulator 350246 4673289 Ajs_0339 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984668.1 349308 D 232721 CDS YP_984669.1 121592773 4673579 350338..350922 1 NC_008782.1 KEGG: xoo:XOO0695 hypothetical protein; hypothetical protein 350922 4673579 Ajs_0340 Acidovorax sp. JS42 hypothetical protein YP_984669.1 350338 D 232721 CDS YP_984670.1 121592774 4673552 350962..351417 1 NC_008782.1 KEGG: reu:Reut_A0848 probable transmembrane protein; hypothetical protein 351417 4673552 Ajs_0341 Acidovorax sp. JS42 hypothetical protein YP_984670.1 350962 D 232721 CDS YP_984671.1 121592775 4673517 complement(351518..351850) 1 NC_008782.1 PFAM: PsiF repeat protein; KEGG: pau:PA14_64460 putative phosphate starvation-inducible protein; PsiF repeat-containing protein 351850 4673517 Ajs_0342 Acidovorax sp. JS42 PsiF repeat-containing protein YP_984671.1 351518 R 232721 CDS YP_984672.1 121592776 4673493 351946..353679 1 NC_008782.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 353679 argS 4673493 argS Acidovorax sp. JS42 arginyl-tRNA synthetase YP_984672.1 351946 D 232721 CDS YP_984673.1 121592777 4673226 353692..354318 1 NC_008782.1 PFAM: Sporulation domain protein; KEGG: rfr:Rfer_0774 sporulation related; sporulation domain-containing protein 354318 4673226 Ajs_0344 Acidovorax sp. JS42 sporulation domain-containing protein YP_984673.1 353692 D 232721 CDS YP_984674.1 121592778 4672708 354377..355027 1 NC_008782.1 PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase; DSBA oxidoreductase 355027 4672708 Ajs_0345 Acidovorax sp. JS42 DSBA oxidoreductase YP_984674.1 354377 D 232721 CDS YP_984675.1 121592779 4673351 355177..355860 1 NC_008782.1 PFAM: OstA family protein; KEGG: rfr:Rfer_0776 OstA-like protein; OstA family protein 355860 4673351 Ajs_0346 Acidovorax sp. JS42 OstA family protein YP_984675.1 355177 D 232721 CDS YP_984676.1 121592780 4672987 355869..356636 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0777 ABC transporter related; ABC transporter-like protein 356636 4672987 Ajs_0347 Acidovorax sp. JS42 ABC transporter-like protein YP_984676.1 355869 D 232721 CDS YP_984677.1 121592781 4672662 356689..358266 1 NC_008782.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rfr:Rfer_0778 sigma-54 (RpoN); RNA polymerase sigma-54 subunit RpoN 358266 4672662 Ajs_0348 Acidovorax sp. JS42 RNA polymerase sigma-54 subunit RpoN YP_984677.1 356689 D 232721 CDS YP_984678.1 121592782 4672868 358270..358713 1 NC_008782.1 KEGG: dar:Daro_1883 hypothetical protein; hypothetical protein 358713 4672868 Ajs_0349 Acidovorax sp. JS42 hypothetical protein YP_984678.1 358270 D 232721 CDS YP_984679.1 121592783 4672667 358710..360032 1 NC_008782.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase; putative RNA methylase 360032 4672667 Ajs_0350 Acidovorax sp. JS42 putative RNA methylase YP_984679.1 358710 D 232721 CDS YP_984680.1 121592784 4672028 360022..360507 1 NC_008782.1 KEGG: pol:Bpro_4483 protein of unknown function DUF132; hypothetical protein 360507 4672028 Ajs_0351 Acidovorax sp. JS42 hypothetical protein YP_984680.1 360022 D 232721 CDS YP_984681.1 121592785 4672025 360495..361796 1 NC_008782.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bbr:BB1554 putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 361796 4672025 Ajs_0352 Acidovorax sp. JS42 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_984681.1 360495 D 232721 CDS YP_984682.1 121592786 4672331 362277..363107 1 NC_008782.1 PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif; SecC motif-containing protein 363107 4672331 Ajs_0353 Acidovorax sp. JS42 SecC motif-containing protein YP_984682.1 362277 D 232721 CDS YP_984683.1 121592787 4672004 complement(363323..363862) 1 NC_008782.1 PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like; CinA domain-containing protein 363862 4672004 Ajs_0354 Acidovorax sp. JS42 CinA domain-containing protein YP_984683.1 363323 R 232721 CDS YP_984684.1 121592788 4672184 complement(363868..364398) 1 NC_008782.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 364398 4672184 Ajs_0355 Acidovorax sp. JS42 phosphatidylglycerophosphatase YP_984684.1 363868 R 232721 CDS YP_984685.1 121592789 4672137 complement(364462..365436) 1 NC_008782.1 KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 365436 4672137 Ajs_0356 Acidovorax sp. JS42 thiamine-monophosphate kinase YP_984685.1 364462 R 232721 CDS YP_984686.1 121592790 4672060 complement(365452..366576) 1 NC_008782.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase 366576 4672060 Ajs_0357 Acidovorax sp. JS42 carboxylate-amine ligase YP_984686.1 365452 R 232721 CDS YP_984687.1 121592791 4671744 complement(366566..367831) 1 NC_008782.1 PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; sodium/hydrogen exchanger 367831 4671744 Ajs_0358 Acidovorax sp. JS42 sodium/hydrogen exchanger YP_984687.1 366566 R 232721 CDS YP_984688.1 121592792 4671681 complement(368013..369995) 1 NC_008782.1 KEGG: rfr:Rfer_0530 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein 369995 4671681 Ajs_0359 Acidovorax sp. JS42 putative site-specific recombinase transmembrane protein YP_984688.1 368013 R 232721 CDS YP_984689.1 121592793 4671447 complement(369992..370405) 1 NC_008782.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 370405 apaG 4671447 apaG Acidovorax sp. JS42 ApaG protein YP_984689.1 369992 R 232721 CDS YP_984690.1 121592794 4671598 370517..371197 1 NC_008782.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: rfr:Rfer_0532 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase 371197 4671598 Ajs_0361 Acidovorax sp. JS42 ribulose-5-phosphate 3-epimerase YP_984690.1 370517 D 232721 CDS YP_984691.1 121592795 4671408 complement(371238..371603) 1 NC_008782.1 KEGG: rfr:Rfer_1966 hypothetical protein; hypothetical protein 371603 4671408 Ajs_0362 Acidovorax sp. JS42 hypothetical protein YP_984691.1 371238 R 232721 CDS YP_984692.1 121592796 4671582 371770..372555 1 NC_008782.1 KEGG: rfr:Rfer_3611 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 372555 4671582 Ajs_0363 Acidovorax sp. JS42 phosphoglycolate phosphatase YP_984692.1 371770 D 232721 CDS YP_984693.1 121592797 4671549 complement(372815..374557) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2225 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 374557 4671549 Ajs_0364 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_984693.1 372815 R 232721 CDS YP_984694.1 121592798 4671547 complement(374679..375281) 1 NC_008782.1 KEGG: pol:Bpro_4459 putative lipoprotein transmembrane; putative lipoprotein transmembrane 375281 4671547 Ajs_0365 Acidovorax sp. JS42 putative lipoprotein transmembrane YP_984694.1 374679 R 232721 CDS YP_984695.1 121592799 4671520 375578..377137 1 NC_008782.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 377137 4671520 Ajs_0366 Acidovorax sp. JS42 anthranilate synthase component I YP_984695.1 375578 D 232721 CDS YP_984696.1 121592800 4671051 377134..377478 1 NC_008782.1 PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase; chorismate mutase 377478 4671051 Ajs_0367 Acidovorax sp. JS42 chorismate mutase YP_984696.1 377134 D 232721 CDS YP_984697.1 121592801 4670977 377475..378047 1 NC_008782.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 378047 4670977 Ajs_0368 Acidovorax sp. JS42 anthranilate synthase component II YP_984697.1 377475 D 232721 CDS YP_984698.1 121592802 4670960 378145..379179 1 NC_008782.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 379179 trpD 4670960 trpD Acidovorax sp. JS42 anthranilate phosphoribosyltransferase YP_984698.1 378145 D 232721 CDS YP_984699.1 121592803 4670926 379434..380234 1 NC_008782.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 380234 trpC 4670926 trpC Acidovorax sp. JS42 indole-3-glycerol-phosphate synthase YP_984699.1 379434 D 232721 CDS YP_984700.1 121592804 4670903 380373..383045 1 NC_008782.1 KEGG: rfr:Rfer_3606 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 383045 4670903 Ajs_0371 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase YP_984700.1 380373 D 232721 CDS YP_984701.1 121592805 4670797 383100..383813 1 NC_008782.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 383813 4670797 Ajs_0372 Acidovorax sp. JS42 uracil-DNA glycosylase YP_984701.1 383100 D 232721 CDS YP_984702.1 121592806 4670729 complement(383814..384701) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein; hypothetical protein 384701 4670729 Ajs_0373 Acidovorax sp. JS42 hypothetical protein YP_984702.1 383814 R 232721 CDS YP_984703.1 121592807 4671197 complement(384698..385798) 1 NC_008782.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: rfr:Rfer_0628 S-adenosylmethionine; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 385798 4671197 Ajs_0374 Acidovorax sp. JS42 S-adenosylmethionine--tRNA-ribosyltransferase- isomerase YP_984703.1 384698 R 232721 CDS YP_984704.1 121592808 4671214 387162..389333 1 NC_008782.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 389333 4671214 Ajs_0376 Acidovorax sp. JS42 ATP-dependent DNA helicase RecG YP_984704.1 387162 D 232721 CDS YP_984705.1 121592809 4671224 389402..390367 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3681 transcriptional regulator, LysR family; LysR family transcriptional regulator 390367 4671224 Ajs_0377 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984705.1 389402 D 232721 CDS YP_984706.1 121592810 4671222 390445..390963 1 NC_008782.1 PFAM: Ferritin, Dps family protein; KEGG: bbr:BB2935 putative DNA-binding protein; Ferritin, Dps family protein 390963 4671222 Ajs_0378 Acidovorax sp. JS42 Ferritin, Dps family protein YP_984706.1 390445 D 232721 CDS YP_984707.1 121592811 4671236 390990..392528 1 NC_008782.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase; adenylate cyclase 392528 4671236 Ajs_0379 Acidovorax sp. JS42 adenylate cyclase YP_984707.1 390990 D 232721 CDS YP_984708.1 121592812 4671191 392732..393604 1 NC_008782.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate octaprenyltransferase 393604 4671191 Ajs_0380 Acidovorax sp. JS42 4-hydroxybenzoate octaprenyltransferase YP_984708.1 392732 D 232721 CDS YP_984709.1 121592813 4671249 complement(393659..394525) 1 NC_008782.1 KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 394525 4671249 Ajs_0381 Acidovorax sp. JS42 pyrroline-5-carboxylate reductase YP_984709.1 393659 R 232721 CDS YP_984710.1 121592814 4671245 complement(394655..396151) 1 NC_008782.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase; glycerol kinase 396151 4671245 Ajs_0382 Acidovorax sp. JS42 glycerol kinase YP_984710.1 394655 R 232721 CDS YP_984711.1 121592815 4671297 complement(396171..396935) 1 NC_008782.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0477 transcriptional regulator, DeoR family; DeoR family transcriptional regulator 396935 4671297 Ajs_0383 Acidovorax sp. JS42 DeoR family transcriptional regulator YP_984711.1 396171 R 232721 CDS YP_984712.1 121592816 4671286 397171..398244 1 NC_008782.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0478 ABC transporter related; ABC transporter-like protein 398244 4671286 Ajs_0384 Acidovorax sp. JS42 ABC transporter-like protein YP_984712.1 397171 D 232721 CDS YP_984713.1 121592817 4671309 398248..399321 1 NC_008782.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0479 ABC transporter related; ABC transporter-like protein 399321 4671309 Ajs_0385 Acidovorax sp. JS42 ABC transporter-like protein YP_984713.1 398248 D 232721 CDS YP_984714.1 121592818 4671329 399470..400366 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3674 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 400366 4671329 Ajs_0386 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_984714.1 399470 D 232721 CDS YP_984715.1 121592819 4671334 400359..401171 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0481 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 401171 4671334 Ajs_0387 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_984715.1 400359 D 232721 CDS YP_984716.1 121592820 4671337 401184..401492 1 NC_008782.1 KEGG: rfr:Rfer_3672 putative integral membrane protein; putative integral membrane protein 401492 4671337 Ajs_0388 Acidovorax sp. JS42 putative integral membrane protein YP_984716.1 401184 D 232721 CDS YP_984717.1 121592821 4671282 401667..403400 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0483 twin-arginine translocation pathway signal; extracellular solute-binding protein 403400 4671282 Ajs_0389 Acidovorax sp. JS42 extracellular solute-binding protein YP_984717.1 401667 D 232721 CDS YP_984718.1 121592822 4671261 403503..405101 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase; FAD dependent oxidoreductase 405101 4671261 Ajs_0390 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_984718.1 403503 D 232721 CDS YP_984719.1 121592823 4671188 405293..405661 1 NC_008782.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 405661 rplN 4671188 rplN Acidovorax sp. JS42 50S ribosomal protein L14 YP_984719.1 405293 D 232721 CDS YP_984720.1 121592824 4670613 405672..405992 1 NC_008782.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 405992 rplX 4670613 rplX Acidovorax sp. JS42 50S ribosomal protein L24 YP_984720.1 405672 D 232721 CDS YP_984721.1 121592825 4670621 406002..406541 1 NC_008782.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 406541 rplE 4670621 rplE Acidovorax sp. JS42 50S ribosomal protein L5 YP_984721.1 406002 D 232721 CDS YP_984722.1 121592826 4670640 406551..406856 1 NC_008782.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 406856 rpsN 4670640 rpsN Acidovorax sp. JS42 30S ribosomal protein S14 YP_984722.1 406551 D 232721 CDS YP_984723.1 121592827 4670648 406877..407272 1 NC_008782.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 407272 rpsH 4670648 rpsH Acidovorax sp. JS42 30S ribosomal protein S8 YP_984723.1 406877 D 232721 CDS YP_984724.1 121592828 4670675 407297..407830 1 NC_008782.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 407830 rplF 4670675 rplF Acidovorax sp. JS42 50S ribosomal protein L6 YP_984724.1 407297 D 232721 CDS YP_984725.1 121592829 4670692 407842..408207 1 NC_008782.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 408207 rplR 4670692 rplR Acidovorax sp. JS42 50S ribosomal protein L18 YP_984725.1 407842 D 232721 CDS YP_984726.1 121592830 4670718 408225..408746 1 NC_008782.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 408746 rpsE 4670718 rpsE Acidovorax sp. JS42 30S ribosomal protein S5 YP_984726.1 408225 D 232721 CDS YP_984727.1 121592831 4670719 408761..408943 1 NC_008782.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 408943 rpmD 4670719 rpmD Acidovorax sp. JS42 50S ribosomal protein L30 YP_984727.1 408761 D 232721 CDS YP_984728.1 121592832 4670724 408954..409385 1 NC_008782.1 late assembly protein; 50S ribosomal protein L15 409385 rplO 4670724 rplO Acidovorax sp. JS42 50S ribosomal protein L15 YP_984728.1 408954 D 232721 CDS YP_984729.1 121592833 4670747 409409..410728 1 NC_008782.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 410728 secY 4670747 secY Acidovorax sp. JS42 preprotein translocase subunit SecY YP_984729.1 409409 D 232721 CDS YP_984730.1 121592834 4670759 410873..410986 1 NC_008782.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 410986 rpmJ 4670759 rpmJ Acidovorax sp. JS42 50S ribosomal protein L36 YP_984730.1 410873 D 232721 CDS YP_984731.1 121592835 4670775 411010..411375 1 NC_008782.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 411375 rpsM 4670775 rpsM Acidovorax sp. JS42 30S ribosomal protein S13 YP_984731.1 411010 D 232721 CDS YP_984732.1 121592836 4670798 411393..411797 1 NC_008782.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 411797 4670798 Ajs_0404 Acidovorax sp. JS42 30S ribosomal protein S11 YP_984732.1 411393 D 232721 CDS YP_984733.1 121592837 4670802 411886..412509 1 NC_008782.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 412509 rpsD 4670802 rpsD Acidovorax sp. JS42 30S ribosomal protein S4 YP_984733.1 411886 D 232721 CDS YP_984734.1 121592838 4670827 412621..413613 1 NC_008782.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 413613 4670827 Ajs_0406 Acidovorax sp. JS42 DNA-directed RNA polymerase subunit alpha YP_984734.1 412621 D 232721 CDS YP_984735.1 121592839 4670841 413703..414092 1 NC_008782.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 414092 rplQ 4670841 rplQ Acidovorax sp. JS42 50S ribosomal protein L17 YP_984735.1 413703 D 232721 CDS YP_984736.1 121592840 4670853 complement(414342..415682) 1 NC_008782.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: xcb:XC_2733 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase 415682 4670853 Ajs_0408 Acidovorax sp. JS42 UDP-glucose 6-dehydrogenase YP_984736.1 414342 R 232721 CDS YP_984737.1 121592841 4670865 complement(415679..416689) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 416689 4670865 Ajs_0409 Acidovorax sp. JS42 NAD-dependent epimerase/dehydratase YP_984737.1 415679 R 232721 CDS YP_984738.1 121592842 4670882 complement(416686..418203) 1 NC_008782.1 KEGG: sme:SMc02383 hypothetical protein; glycosyltransferase 418203 4670882 Ajs_0410 Acidovorax sp. JS42 glycosyltransferase YP_984738.1 416686 R 232721 CDS YP_984739.1 121592843 4670890 418307..419338 1 NC_008782.1 PFAM: glycosyl transferase, family 2; KEGG: ana:alr3380 dolichol-phosphate mannosyltransferase; glycosyl transferase family protein 419338 4670890 Ajs_0411 Acidovorax sp. JS42 glycosyl transferase family protein YP_984739.1 418307 D 232721 CDS YP_984740.1 121592844 4670904 419335..420264 1 NC_008782.1 KEGG: gvi:gll0941 hypothetical protein; hypothetical protein 420264 4670904 Ajs_0412 Acidovorax sp. JS42 hypothetical protein YP_984740.1 419335 D 232721 CDS YP_984741.1 121592845 4670911 complement(420503..421441) 1 NC_008782.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_3872 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase 421441 4670911 Ajs_0413 Acidovorax sp. JS42 uroporphyrin-III C/tetrapyrrole methyltransferase YP_984741.1 420503 R 232721 CDS YP_984742.1 121592846 4670954 421441..421839 1 NC_008782.1 PFAM: protein of unknown function UPF0102; KEGG: rfr:Rfer_3873 protein of unknown function UPF0102; hypothetical protein 421839 4670954 Ajs_0414 Acidovorax sp. JS42 hypothetical protein YP_984742.1 421441 D 232721 CDS YP_984743.1 121592847 4671017 421898..422491 1 NC_008782.1 KEGG: pol:Bpro_0392 phosphoheptose isomerase; phosphoheptose isomerase 422491 4671017 Ajs_0415 Acidovorax sp. JS42 phosphoheptose isomerase YP_984743.1 421898 D 232721 CDS YP_984744.1 121592848 4671023 422488..423162 1 NC_008782.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rfr:Rfer_3875 transport-associated; transport protein 423162 4671023 Ajs_0416 Acidovorax sp. JS42 transport protein YP_984744.1 422488 D 232721 CDS YP_984745.1 121592849 4671045 complement(423260..424189) 1 NC_008782.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3876 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 424189 4671045 Ajs_0417 Acidovorax sp. JS42 3-hydroxyisobutyrate dehydrogenase YP_984745.1 423260 R 232721 CDS YP_984746.1 121592850 4670565 complement(424254..425390) 1 NC_008782.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein; twitching motility protein 425390 4670565 Ajs_0418 Acidovorax sp. JS42 twitching motility protein YP_984746.1 424254 R 232721 CDS YP_984747.1 121592851 4671129 complement(425437..426066) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; KEGG: psp:PSPPH_1557 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein 426066 4671129 Ajs_0419 Acidovorax sp. JS42 cyclic nucleotide-binding protein YP_984747.1 425437 R 232721 CDS YP_984748.1 121592852 4671146 complement(426143..427186) 1 NC_008782.1 KEGG: pol:Bpro_0396 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 427186 4671146 Ajs_0420 Acidovorax sp. JS42 twitching motility protein YP_984748.1 426143 R 232721 CDS YP_984749.1 121592853 4670568 427226..427942 1 NC_008782.1 PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001; alanine racemase domain-containing protein 427942 4670568 Ajs_0421 Acidovorax sp. JS42 alanine racemase domain-containing protein YP_984749.1 427226 D 232721 CDS YP_984750.1 121592854 4670572 427981..429117 1 NC_008782.1 PFAM: aminotransferase, class V; aminotransferase class-III; KEGG: rfr:Rfer_3691 aminotransferase, class V; class V aminotransferase 429117 4670572 Ajs_0422 Acidovorax sp. JS42 class V aminotransferase YP_984750.1 427981 D 232721 CDS YP_984751.1 121592855 4671173 429185..430543 1 NC_008782.1 PFAM: protein of unknown function DUF445; KEGG: bxe:Bxe_B1234 hypothetical protein; hypothetical protein 430543 4671173 Ajs_0423 Acidovorax sp. JS42 hypothetical protein YP_984751.1 429185 D 232721 CDS YP_984752.1 121592856 4671336 complement(430603..431091) 1 NC_008782.1 KEGG: bbr:BB3068 hypothetical protein; hypothetical protein 431091 4671336 Ajs_0424 Acidovorax sp. JS42 hypothetical protein YP_984752.1 430603 R 232721 CDS YP_984753.1 121592857 4671233 complement(431151..432635) 1 NC_008782.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 432635 4671233 Ajs_0425 Acidovorax sp. JS42 FAD linked oxidase domain-containing protein YP_984753.1 431151 R 232721 CDS YP_984754.1 121592858 4671273 complement(432693..433382) 1 NC_008782.1 PFAM: MT-A70 family protein; KEGG: nmu:Nmul_A2608 MT-A70; MT-A70 family protein 433382 4671273 Ajs_0426 Acidovorax sp. JS42 MT-A70 family protein YP_984754.1 432693 R 232721 CDS YP_984755.1 121592859 4671295 complement(433385..433972) 1 NC_008782.1 KEGG: rde:RD1_1080 hypothetical protein; hypothetical protein 433972 4671295 Ajs_0427 Acidovorax sp. JS42 hypothetical protein YP_984755.1 433385 R 232721 CDS YP_984756.1 121592860 4671254 complement(434125..434973) 1 NC_008782.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 434973 purU 4671254 purU Acidovorax sp. JS42 formyltetrahydrofolate deformylase YP_984756.1 434125 R 232721 CDS YP_984757.1 121592861 4671450 complement(437371..438225) 1 NC_008782.1 KEGG: pol:Bpro_0441 hypothetical protein; hypothetical protein 438225 4671450 Ajs_0430 Acidovorax sp. JS42 hypothetical protein YP_984757.1 437371 R 232721 CDS YP_984758.1 121592862 4671455 438515..440950 1 NC_008782.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; KEGG: bte:BTH_II1936 ribonucleotide reductase system; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 440950 4671455 Ajs_0431 Acidovorax sp. JS42 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent YP_984758.1 438515 D 232721 CDS YP_984759.1 121592863 4671481 441129..443045 1 NC_008782.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; signal transduction histidine kinase, nitrate/nitrite-specific, NarQ 443045 4671481 Ajs_0432 Acidovorax sp. JS42 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ YP_984759.1 441129 D 232721 CDS YP_984760.1 121592864 4671484 443042..443713 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1869 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 443713 4671484 Ajs_0433 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_984760.1 443042 D 232721 CDS YP_984761.1 121592865 4671855 443860..445167 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1; major facilitator superfamily transporter 445167 4671855 Ajs_0434 Acidovorax sp. JS42 major facilitator superfamily transporter YP_984761.1 443860 D 232721 CDS YP_984762.1 121592866 4671857 445188..446633 1 NC_008782.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0334 nitrate transporter; nitrite transporter 446633 4671857 Ajs_0435 Acidovorax sp. JS42 nitrite transporter YP_984762.1 445188 D 232721 CDS YP_984763.1 121592867 4671895 446670..450470 1 NC_008782.1 TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rfr:Rfer_2792 nitrate reductase, alpha subunit; respiratory nitrate reductase subunit alpha apoprotein 450470 4671895 Ajs_0436 Acidovorax sp. JS42 respiratory nitrate reductase subunit alpha apoprotein YP_984763.1 446670 D 232721 CDS YP_984764.1 121592868 4671909 450489..452012 1 NC_008782.1 KEGG: pol:Bpro_4594 nitrate reductase, beta subunit; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; respiratory nitrate reductase subunit beta 452012 4671909 Ajs_0437 Acidovorax sp. JS42 respiratory nitrate reductase subunit beta YP_984764.1 450489 D 232721 CDS YP_984765.1 121592869 4671934 452032..452730 1 NC_008782.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone; respiratory nitrate reductase chaperone NarJ 452730 4671934 Ajs_0438 Acidovorax sp. JS42 respiratory nitrate reductase chaperone NarJ YP_984765.1 452032 D 232721 CDS YP_984766.1 121592870 4671949 452727..453461 1 NC_008782.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 453461 4671949 Ajs_0439 Acidovorax sp. JS42 respiratory nitrate reductase subunit gamma YP_984766.1 452727 D 232721 CDS YP_984767.1 121592871 4671910 453552..454388 1 NC_008782.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2796 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 454388 4671910 Ajs_0440 Acidovorax sp. JS42 PpiC-type peptidyl-prolyl cis-trans isomerase YP_984767.1 453552 D 232721 CDS YP_984768.1 121592872 4671521 454410..455087 1 NC_008782.1 PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase; carbonate dehydratase 455087 4671521 Ajs_0441 Acidovorax sp. JS42 carbonate dehydratase YP_984768.1 454410 D 232721 CDS YP_984769.1 121592873 4671239 455124..456458 1 NC_008782.1 PFAM: NnrS family protein; KEGG: rfr:Rfer_4151 NnrS; NnrS family protein 456458 4671239 Ajs_0442 Acidovorax sp. JS42 NnrS family protein YP_984769.1 455124 D 232721 CDS YP_984770.1 121592874 4671601 456464..457126 1 NC_008782.1 PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase; nitroreductase 457126 4671601 Ajs_0443 Acidovorax sp. JS42 nitroreductase YP_984770.1 456464 D 232721 CDS YP_984771.1 121592875 4670591 457127..457552 1 NC_008782.1 KEGG: rfr:Rfer_2344 hypothetical protein; hypothetical protein 457552 4670591 Ajs_0444 Acidovorax sp. JS42 hypothetical protein YP_984771.1 457127 D 232721 CDS YP_984772.1 121592876 4671627 457557..458102 1 NC_008782.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_4585 hypothetical protein; hemerythrin HHE cation-binding domain-containing protein 458102 4671627 Ajs_0445 Acidovorax sp. JS42 hemerythrin HHE cation-binding domain-containing protein YP_984772.1 457557 D 232721 CDS YP_984773.1 121592877 4671658 complement(458336..458626) 1 NC_008782.1 KEGG: pol:Bpro_0443 hypothetical protein; hypothetical protein 458626 4671658 Ajs_0446 Acidovorax sp. JS42 hypothetical protein YP_984773.1 458336 R 232721 CDS YP_984774.1 121592878 4671662 complement(458803..460017) 1 NC_008782.1 KEGG: pol:Bpro_0444 hypothetical protein; hypothetical protein 460017 4671662 Ajs_0447 Acidovorax sp. JS42 hypothetical protein YP_984774.1 458803 R 232721 CDS YP_984775.1 121592879 4671696 complement(460022..460810) 1 NC_008782.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_0445 transcriptional regulator, IclR family; IclR family transcriptional regulator 460810 4671696 Ajs_0448 Acidovorax sp. JS42 IclR family transcriptional regulator YP_984775.1 460022 R 232721 CDS YP_984776.1 121592880 4671789 460926..461909 1 NC_008782.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 461909 4671789 Ajs_0449 Acidovorax sp. JS42 fumarylacetoacetate (FAA) hydrolase YP_984776.1 460926 D 232721 CDS YP_984777.1 121592881 4671506 461986..462954 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0112 hypothetical protein; hypothetical protein 462954 4671506 Ajs_0450 Acidovorax sp. JS42 hypothetical protein YP_984777.1 461986 D 232721 CDS YP_984778.1 121592882 4671823 complement(463019..465085) 1 NC_008782.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_4032 molybdopterin oxidoreductase; molybdopterin oxidoreductase 465085 4671823 Ajs_0451 Acidovorax sp. JS42 molybdopterin oxidoreductase YP_984778.1 463019 R 232721 CDS YP_984779.1 121592883 4671511 465207..466355 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc2864 probable LEU/ILE/VAL-binding signal peptide protein; extracellular ligand-binding receptor 466355 4671511 Ajs_0452 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_984779.1 465207 D 232721 CDS YP_984780.1 121592884 4671894 466471..467676 1 NC_008782.1 KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 467676 4671894 Ajs_0453 Acidovorax sp. JS42 amidohydrolase YP_984780.1 466471 D 232721 CDS YP_984781.1 121592885 4671931 467777..468877 1 NC_008782.1 KEGG: pol:Bpro_2110 hypothetical protein; hypothetical protein 468877 4671931 Ajs_0454 Acidovorax sp. JS42 hypothetical protein YP_984781.1 467777 D 232721 CDS YP_984782.1 121592886 4671861 468962..469219 1 NC_008782.1 PFAM: acyl-coA-binding protein, ACBP; KEGG: rfr:Rfer_3532 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein 469219 4671861 Ajs_0455 Acidovorax sp. JS42 acyl-CoA-binding protein YP_984782.1 468962 D 232721 CDS YP_984783.1 121592887 4671991 complement(469304..470449) 1 NC_008782.1 KEGG: pol:Bpro_4033 putative zinc protease protein; putative zinc protease 470449 4671991 Ajs_0456 Acidovorax sp. JS42 putative zinc protease YP_984783.1 469304 R 232721 CDS YP_984784.1 121592888 4672512 470524..471195 1 NC_008782.1 PFAM: methyladenine glycosylase; KEGG: pol:Bpro_3540 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I 471195 4672512 Ajs_0457 Acidovorax sp. JS42 DNA-3-methyladenine glycosylase I YP_984784.1 470524 D 232721 CDS YP_984785.1 121592889 4672525 complement(471265..471882) 1 NC_008782.1 KEGG: eca:ECA2796 hypothetical protein; hypothetical protein 471882 4672525 Ajs_0458 Acidovorax sp. JS42 hypothetical protein YP_984785.1 471265 R 232721 CDS YP_984786.1 121592890 4672537 complement(471935..472105) 1 NC_008782.1 KEGG: rfr:Rfer_0521 hypothetical protein; hypothetical protein 472105 4672537 Ajs_0459 Acidovorax sp. JS42 hypothetical protein YP_984786.1 471935 R 232721 CDS YP_984787.1 121592891 4672574 472395..473678 1 NC_008782.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 473678 4672574 Ajs_0460 Acidovorax sp. JS42 cyclopropane-fatty-acyl-phospholipid synthase YP_984787.1 472395 D 232721 CDS YP_984788.1 121592892 4672577 473699..474022 1 NC_008782.1 KEGG: rfr:Rfer_3535 hypothetical protein; hypothetical protein 474022 4672577 Ajs_0461 Acidovorax sp. JS42 hypothetical protein YP_984788.1 473699 D 232721 CDS YP_984789.1 121592893 4672706 complement(474060..475097) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065; hypothetical protein 475097 4672706 Ajs_0462 Acidovorax sp. JS42 hypothetical protein YP_984789.1 474060 R 232721 CDS YP_984790.1 121592894 4672711 complement(475263..476252) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065; hypothetical protein 476252 4672711 Ajs_0463 Acidovorax sp. JS42 hypothetical protein YP_984790.1 475263 R 232721 CDS YP_984791.1 121592895 4672602 complement(476444..477691) 1 NC_008782.1 KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase 477691 4672602 Ajs_0464 Acidovorax sp. JS42 putative phenylacetate-CoA ligase YP_984791.1 476444 R 232721 CDS YP_984792.1 121592896 4672554 complement(477784..478593) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0599 ABC transporter related; ABC transporter-like protein 478593 4672554 Ajs_0465 Acidovorax sp. JS42 ABC transporter-like protein YP_984792.1 477784 R 232721 CDS YP_984793.1 121592897 4672542 complement(478790..480115) 1 NC_008782.1 KEGG: rfr:Rfer_3538 hypothetical protein; hypothetical protein 480115 4672542 Ajs_0466 Acidovorax sp. JS42 hypothetical protein YP_984793.1 478790 R 232721 CDS YP_984794.1 121592898 4672565 complement(480192..481268) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator; inner-membrane translocator 481268 4672565 Ajs_0467 Acidovorax sp. JS42 inner-membrane translocator YP_984794.1 480192 R 232721 CDS YP_984795.1 121592899 4672524 complement(481387..482316) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; inner-membrane translocator 482316 4672524 Ajs_0468 Acidovorax sp. JS42 inner-membrane translocator YP_984795.1 481387 R 232721 CDS YP_984796.1 121592900 4672555 complement(482327..483112) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related; ABC transporter-like protein 483112 4672555 Ajs_0469 Acidovorax sp. JS42 ABC transporter-like protein YP_984796.1 482327 R 232721 CDS YP_984797.1 121592901 4672505 complement(483135..485183) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_0249 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 485183 4672505 Ajs_0470 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984797.1 483135 R 232721 CDS YP_984798.1 121592902 4672081 485258..487000 1 NC_008782.1 PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein 487000 4672081 Ajs_0471 Acidovorax sp. JS42 peptidoglycan-binding domain-containing protein YP_984798.1 485258 D 232721 CDS YP_984799.1 121592903 4671923 487005..487814 1 NC_008782.1 KEGG: rfr:Rfer_0082 hypothetical protein; hypothetical protein 487814 4671923 Ajs_0472 Acidovorax sp. JS42 hypothetical protein YP_984799.1 487005 D 232721 CDS YP_984800.1 121592904 4671908 487961..488779 1 NC_008782.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 488779 4671908 Ajs_0473 Acidovorax sp. JS42 Crp/FNR family transcriptional regulator YP_984800.1 487961 D 232721 CDS YP_984801.1 121592905 4672141 488791..489873 1 NC_008782.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 489873 4672141 Ajs_0474 Acidovorax sp. JS42 RNA-binding S4 domain-containing protein YP_984801.1 488791 D 232721 CDS YP_984802.1 121592906 4672155 490220..492172 1 NC_008782.1 molecular chaperone; heat shock protein 90 492172 4672155 Ajs_0475 Acidovorax sp. JS42 heat shock protein 90 YP_984802.1 490220 D 232721 CDS YP_984803.1 121592907 4672157 492376..493368 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4856 hypothetical protein; hypothetical protein 493368 4672157 Ajs_0476 Acidovorax sp. JS42 hypothetical protein YP_984803.1 492376 D 232721 CDS YP_984804.1 121592908 4672162 493585..494184 1 NC_008782.1 KEGG: sru:SRU_0623 hypothetical protein; hypothetical protein 494184 4672162 Ajs_0477 Acidovorax sp. JS42 hypothetical protein YP_984804.1 493585 D 232721 CDS YP_984805.1 121592909 4672174 494329..494880 1 NC_008782.1 hypothetical protein 494880 4672174 Ajs_0478 Acidovorax sp. JS42 hypothetical protein YP_984805.1 494329 D 232721 CDS YP_984806.1 121592910 4672177 complement(494887..495927) 1 NC_008782.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 495927 4672177 Ajs_0479 Acidovorax sp. JS42 serine/threonine protein kinase YP_984806.1 494887 R 232721 CDS YP_984807.1 121592911 4672190 complement(495963..497402) 1 NC_008782.1 PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase; serine/threonine protein kinase 497402 4672190 Ajs_0480 Acidovorax sp. JS42 serine/threonine protein kinase YP_984807.1 495963 R 232721 CDS YP_984808.1 121592912 4672214 complement(497446..498204) 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: ade:Adeh_3700 metallophosphoesterase; metallophosphoesterase 498204 4672214 Ajs_0481 Acidovorax sp. JS42 metallophosphoesterase YP_984808.1 497446 R 232721 CDS YP_984809.1 121592913 4672241 complement(498335..498751) 1 NC_008782.1 PFAM: OsmC family protein; KEGG: pfo:Pfl_2206 OsmC-like protein; OsmC family protein 498751 4672241 Ajs_0482 Acidovorax sp. JS42 OsmC family protein YP_984809.1 498335 R 232721 CDS YP_984810.1 121592914 4672250 complement(498813..499268) 1 NC_008782.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family; MarR family transcriptional regulator 499268 4672250 Ajs_0483 Acidovorax sp. JS42 MarR family transcriptional regulator YP_984810.1 498813 R 232721 CDS YP_984811.1 121592915 4672256 complement(504022..504597) 1 NC_008782.1 TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein; CRISPR-associated Csy4 family protein 504597 4672256 Ajs_0484 Acidovorax sp. JS42 CRISPR-associated Csy4 family protein YP_984811.1 504022 R 232721 CDS YP_984812.1 121592916 4672281 complement(504611..505636) 1 NC_008782.1 TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: cvi:CV1752 hypothetical protein; CRISPR-associated Csy3 family protein 505636 4672281 Ajs_0485 Acidovorax sp. JS42 CRISPR-associated Csy3 family protein YP_984812.1 504611 R 232721 CDS YP_984813.1 121592917 4672294 complement(505693..506775) 1 NC_008782.1 TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: cvi:CV1753 hypothetical protein; CRISPR-associated Csy2 family protein 506775 4672294 Ajs_0486 Acidovorax sp. JS42 CRISPR-associated Csy2 family protein YP_984813.1 505693 R 232721 CDS YP_984814.1 121592918 4672301 complement(506772..508217) 1 NC_008782.1 TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: cvi:CV1754 hypothetical protein; CRISPR-associated Csy1 family protein 508217 4672301 Ajs_0487 Acidovorax sp. JS42 CRISPR-associated Csy1 family protein YP_984814.1 506772 R 232721 CDS YP_984815.1 121592919 4672311 complement(508222..511758) 1 NC_008782.1 TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: cvi:CV1755 hypothetical protein; CRISPR-associated helicase Cas3 family protein 511758 4672311 Ajs_0488 Acidovorax sp. JS42 CRISPR-associated helicase Cas3 family protein YP_984815.1 508222 R 232721 CDS YP_984816.1 121592920 4672324 complement(511755..512759) 1 NC_008782.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: cvi:CV1756 hypothetical protein; CRISPR-associated Cas1 family protein 512759 4672324 Ajs_0489 Acidovorax sp. JS42 CRISPR-associated Cas1 family protein YP_984816.1 511755 R 232721 CDS YP_984817.1 121592921 4672380 complement(512795..513976) 1 NC_008782.1 PFAM: alanine racemase domain protein; KEGG: pol:Bpro_4092 putative threonine aldolase; alanine racemase domain-containing protein 513976 4672380 Ajs_0490 Acidovorax sp. JS42 alanine racemase domain-containing protein YP_984817.1 512795 R 232721 CDS YP_984818.1 121592922 4672381 complement(513960..514604) 1 NC_008782.1 PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_0816 phosphoglycerate mutase; phosphoglycerate mutase 514604 4672381 Ajs_0491 Acidovorax sp. JS42 phosphoglycerate mutase YP_984818.1 513960 R 232721 CDS YP_984819.1 121592923 4672383 complement(514627..515091) 1 NC_008782.1 KEGG: nmu:Nmul_A2600 hypothetical protein; hypothetical protein 515091 4672383 Ajs_0492 Acidovorax sp. JS42 hypothetical protein YP_984819.1 514627 R 232721 CDS YP_984820.1 121592924 4672037 complement(515118..515753) 1 NC_008782.1 KEGG: pol:Bpro_4090 hypothetical protein; hypothetical protein 515753 4672037 Ajs_0493 Acidovorax sp. JS42 hypothetical protein YP_984820.1 515118 R 232721 CDS YP_984821.1 121592925 4672508 complement(515798..516751) 1 NC_008782.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 516751 4672508 Ajs_0494 Acidovorax sp. JS42 C32 tRNA thiolase YP_984821.1 515798 R 232721 CDS YP_984822.1 121592926 4672481 complement(516756..517127) 1 NC_008782.1 PFAM: dihydroneopterin aldolase; KEGG: pol:Bpro_4088 dihydroneopterin aldolase; dihydroneopterin aldolase 517127 4672481 Ajs_0495 Acidovorax sp. JS42 dihydroneopterin aldolase YP_984822.1 516756 R 232721 CDS YP_984823.1 121592927 4672585 complement(517145..517930) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 517930 4672585 Ajs_0496 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_984823.1 517145 R 232721 CDS YP_984824.1 121592928 4672514 517949..519049 1 NC_008782.1 PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185; hypothetical protein 519049 4672514 Ajs_0497 Acidovorax sp. JS42 hypothetical protein YP_984824.1 517949 D 232721 CDS YP_984825.1 121592929 4672479 519517..519711 1 NC_008782.1 KEGG: rfr:Rfer_0811 hypothetical protein; hypothetical protein 519711 4672479 Ajs_0499 Acidovorax sp. JS42 hypothetical protein YP_984825.1 519517 D 232721 CDS YP_984826.1 121592930 4672520 519808..520818 1 NC_008782.1 PFAM: ROK family protein; KEGG: pol:Bpro_4084 hypothetical protein; glucokinase 520818 4672520 Ajs_0500 Acidovorax sp. JS42 glucokinase YP_984826.1 519808 D 232721 CDS YP_984827.1 121592931 4672485 complement(520894..522312) 1 NC_008782.1 KEGG: reu:Reut_A0416 glycosyl transferase, family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase 522312 4672485 Ajs_0501 Acidovorax sp. JS42 alpha,alpha-trehalose-phosphate synthase YP_984827.1 520894 R 232721 CDS YP_984828.1 121592932 4672582 complement(522329..524149) 1 NC_008782.1 PFAM: glycoside hydrolase 15-related; KEGG: reu:Reut_A0415 glycoside hydrolase 15-related; glycoside hydrolase 15-like 524149 4672582 Ajs_0502 Acidovorax sp. JS42 glycoside hydrolase 15-like YP_984828.1 522329 R 232721 CDS YP_984829.1 121592933 4671990 complement(524146..524877) 1 NC_008782.1 KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase 524877 4671990 Ajs_0503 Acidovorax sp. JS42 HAD family hydrolase YP_984829.1 524146 R 232721 CDS YP_984830.1 121592934 4672685 525004..525441 1 NC_008782.1 TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin; thioredoxin 525441 4672685 Ajs_0504 Acidovorax sp. JS42 thioredoxin YP_984830.1 525004 D 232721 CDS YP_984831.1 121592935 4673127 complement(525586..526863) 1 NC_008782.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_1090 metal dependent phosphohydrolase; metal dependent phosphohydrolase 526863 4673127 Ajs_0505 Acidovorax sp. JS42 metal dependent phosphohydrolase YP_984831.1 525586 R 232721 CDS YP_984832.1 121592936 4673123 complement(527175..527942) 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: rfr:Rfer_4142 metallophosphoesterase; metallophosphoesterase 527942 4673123 Ajs_0506 Acidovorax sp. JS42 metallophosphoesterase YP_984832.1 527175 R 232721 CDS YP_984833.1 121592937 4672713 complement(527960..528646) 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_1089 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 528646 4672713 Ajs_0507 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_984833.1 527960 R 232721 CDS YP_984834.1 121592938 4673153 complement(528776..529348) 1 NC_008782.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rfr:Rfer_1087 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 529348 4673153 Ajs_0508 Acidovorax sp. JS42 5-formyltetrahydrofolate cyclo-ligase YP_984834.1 528776 R 232721 CDS YP_984835.1 121592939 4673105 529372..531345 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 531345 4673105 Ajs_0509 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_984835.1 529372 D 232721 CDS YP_984836.1 121592940 4673108 complement(531421..531993) 1 NC_008782.1 PFAM: cytochrome B561; KEGG: rsp:RSP_2807 putative cytochrome b; cytochrome B561 531993 4673108 Ajs_0510 Acidovorax sp. JS42 cytochrome B561 YP_984836.1 531421 R 232721 CDS YP_984837.1 121592941 4673157 complement(531974..532243) 1 NC_008782.1 KEGG: rso:RSc2353 probable signal peptide protein; putative signal peptide protein 532243 4673157 Ajs_0511 Acidovorax sp. JS42 putative signal peptide protein YP_984837.1 531974 R 232721 CDS YP_984838.1 121592942 4673126 complement(532302..533006) 1 NC_008782.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_2273 2OG-Fe(II) oxygenase; putative hydroxylase 533006 4673126 Ajs_0512 Acidovorax sp. JS42 putative hydroxylase YP_984838.1 532302 R 232721 CDS YP_984839.1 121592943 4673181 complement(532979..534076) 1 NC_008782.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pat:Patl_2274 (S)-2-hydroxy-acid oxidase; (S)-2-hydroxy-acid oxidase 534076 4673181 Ajs_0513 Acidovorax sp. JS42 (S)-2-hydroxy-acid oxidase YP_984839.1 532979 R 232721 CDS YP_984840.1 121592944 4673189 complement(534129..536435) 1 NC_008782.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pat:Patl_2275 TonB-dependent receptor; TonB-dependent receptor 536435 4673189 Ajs_0514 Acidovorax sp. JS42 TonB-dependent receptor YP_984840.1 534129 R 232721 CDS YP_984841.1 121592945 4673185 complement(536686..537612) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like; beta-lactamase domain-containing protein 537612 4673185 Ajs_0515 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_984841.1 536686 R 232721 CDS YP_984842.1 121592946 4673200 complement(537647..539332) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4225 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 539332 4673200 Ajs_0516 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984842.1 537647 R 232721 CDS YP_984843.1 121592947 4673209 539473..540384 1 NC_008782.1 PFAM: PGAP1 family protein; KEGG: pol:Bpro_4221 putative lipase transmembrane protein; PGAP1 family protein 540384 4673209 Ajs_0517 Acidovorax sp. JS42 PGAP1 family protein YP_984843.1 539473 D 232721 CDS YP_984844.1 121592948 4672764 complement(540403..541242) 1 NC_008782.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 541242 phhA 4672764 phhA Acidovorax sp. JS42 phenylalanine 4-monooxygenase YP_984844.1 540403 R 232721 CDS YP_984845.1 121592949 4672590 complement(541328..542296) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3791 uncharacterized protein UPF0065; hypothetical protein 542296 4672590 Ajs_0519 Acidovorax sp. JS42 hypothetical protein YP_984845.1 541328 R 232721 CDS YP_984846.1 121592950 4672780 complement(542387..543505) 1 NC_008782.1 KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 543505 4672780 Ajs_0520 Acidovorax sp. JS42 4-hydroxyphenylpyruvate dioxygenase YP_984846.1 542387 R 232721 CDS YP_984847.1 121592951 4672807 543691..544176 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4212 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 544176 4672807 Ajs_0521 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_984847.1 543691 D 232721 CDS YP_984848.1 121592952 4672474 544408..545085 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 545085 4672474 Ajs_0522 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_984848.1 544408 D 232721 CDS YP_984849.1 121592953 4672841 545137..546057 1 NC_008782.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: rfr:Rfer_3698 CBS; CBS domain-containing protein 546057 4672841 Ajs_0523 Acidovorax sp. JS42 CBS domain-containing protein YP_984849.1 545137 D 232721 CDS YP_984850.1 121592954 4672861 546057..547655 1 NC_008782.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 547655 lnt 4672861 lnt Acidovorax sp. JS42 apolipoprotein N-acyltransferase YP_984850.1 546057 D 232721 CDS YP_984851.1 121592955 4672885 547836..548360 1 NC_008782.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 548360 4672885 Ajs_0525 Acidovorax sp. JS42 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_984851.1 547836 D 232721 CDS YP_984852.1 121592956 4672908 548357..549580 1 NC_008782.1 PFAM: beta-ketoacyl synthase; KEGG: pen:PSEEN3623 beta-ketoacyl-ACP synthase I (3-oxoacyl-[acyl-carrier-protein] synthase I); beta-ketoacyl synthase 549580 4672908 Ajs_0526 Acidovorax sp. JS42 beta-ketoacyl synthase YP_984852.1 548357 D 232721 CDS YP_984853.1 121592957 4672912 549687..550640 1 NC_008782.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 550640 glyQ 4672912 glyQ Acidovorax sp. JS42 glycyl-tRNA synthetase subunit alpha YP_984853.1 549687 D 232721 CDS YP_984854.1 121592958 4672967 550671..552833 1 NC_008782.1 KEGG: pol:Bpro_4202 glycine--tRNA ligase; glycine--tRNA ligase 552833 4672967 Ajs_0528 Acidovorax sp. JS42 glycine--tRNA ligase YP_984854.1 550671 D 232721 CDS YP_984855.1 121592959 4672983 552918..553493 1 NC_008782.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase; D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase 553493 4672983 Ajs_0529 Acidovorax sp. JS42 D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase YP_984855.1 552918 D 232721 CDS YP_984856.1 121592960 4672991 553571..554320 1 NC_008782.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 554320 4672991 Ajs_0530 Acidovorax sp. JS42 phospholipid/glycerol acyltransferase YP_984856.1 553571 D 232721 CDS YP_984857.1 121592961 4673011 554322..555242 1 NC_008782.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45; hypothetical protein 555242 4673011 Ajs_0531 Acidovorax sp. JS42 hypothetical protein YP_984857.1 554322 D 232721 CDS YP_984858.1 121592962 4673018 555242..555721 1 NC_008782.1 SMART: Rhodanese domain protein; KEGG: rfr:Rfer_3613 rhodanese-like; rhodanese domain-containing protein 555721 4673018 Ajs_0532 Acidovorax sp. JS42 rhodanese domain-containing protein YP_984858.1 555242 D 232721 CDS YP_984859.1 121592963 4673026 complement(555815..556303) 1 NC_008782.1 PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: eba:ebA3069 conserved hypothetical protein, probably involved in cell wall turnover; peptidoglycan-binding LysM 556303 4673026 Ajs_0533 Acidovorax sp. JS42 peptidoglycan-binding LysM YP_984859.1 555815 R 232721 CDS YP_984860.1 121592964 4673033 556460..557236 1 NC_008782.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 557236 4673033 Ajs_0534 Acidovorax sp. JS42 pantothenate kinase YP_984860.1 556460 D 232721 CDS YP_984861.1 121592965 4672734 complement(557267..557920) 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: rfr:Rfer_3529 transcriptional regulator, TetR family; TetR family transcriptional regulator 557920 4672734 Ajs_0535 Acidovorax sp. JS42 TetR family transcriptional regulator YP_984861.1 557267 R 232721 CDS YP_984862.1 121592966 4673056 complement(558013..558486) 1 NC_008782.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated; poly(hydroxyalkanoate) granule-associated protein 558486 4673056 Ajs_0536 Acidovorax sp. JS42 poly(hydroxyalkanoate) granule-associated protein YP_984862.1 558013 R 232721 CDS YP_984863.1 121592967 4672740 558675..559736 1 NC_008782.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 559736 4672740 Ajs_0537 Acidovorax sp. JS42 dTDP-glucose 4,6-dehydratase YP_984863.1 558675 D 232721 CDS YP_984864.1 121592968 4673190 559733..560611 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 560611 4673190 Ajs_0538 Acidovorax sp. JS42 dTDP-4-dehydrorhamnose reductase YP_984864.1 559733 D 232721 CDS YP_984865.1 121592969 4673154 560620..561504 1 NC_008782.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 561504 4673154 Ajs_0539 Acidovorax sp. JS42 glucose-1-phosphate thymidylyltransferase YP_984865.1 560620 D 232721 CDS YP_984866.1 121592970 4673132 561512..562060 1 NC_008782.1 KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 562060 4673132 Ajs_0540 Acidovorax sp. JS42 dTDP-4-dehydrorhamnose 3,5-epimerase YP_984866.1 561512 D 232721 CDS YP_984867.1 121592971 4672710 562152..563054 1 NC_008782.1 TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase, family 2; KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase 563054 4672710 Ajs_0541 Acidovorax sp. JS42 rhamnosyltransferase YP_984867.1 562152 D 232721 CDS YP_984868.1 121592972 4673191 563100..566051 1 NC_008782.1 PFAM: glycosyl transferase, family 2; KEGG: xac:XAC3598 truncated O-antigen biosynthesis protein; glycosyl transferase family protein 566051 4673191 Ajs_0542 Acidovorax sp. JS42 glycosyl transferase family protein YP_984868.1 563100 D 232721 CDS YP_984869.1 121592973 4673229 566136..567431 1 NC_008782.1 KEGG: nar:Saro_3231 hypothetical protein; hypothetical protein 567431 4673229 Ajs_0543 Acidovorax sp. JS42 hypothetical protein YP_984869.1 566136 D 232721 CDS YP_984870.1 121592974 4673864 567445..568287 1 NC_008782.1 PFAM: ABC-2 type transporter; KEGG: bur:Bcep18194_A3980 ABC polysaccharide/polyol phosphate export pump, inner membrane subunit; ABC-2 type transporter 568287 4673864 Ajs_0544 Acidovorax sp. JS42 ABC-2 type transporter YP_984870.1 567445 D 232721 CDS YP_984871.1 121592975 4673875 568277..570727 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3694 ABC transporter related; ABC transporter-like protein 570727 4673875 Ajs_0545 Acidovorax sp. JS42 ABC transporter-like protein YP_984871.1 568277 D 232721 CDS YP_984872.1 121592976 4673874 570724..571374 1 NC_008782.1 KEGG: fal:FRAAL5663 hypothetical protein; putative acetyltransferases (isoleucine patch superfamily); hypothetical protein 571374 4673874 Ajs_0546 Acidovorax sp. JS42 hypothetical protein YP_984872.1 570724 D 232721 CDS YP_984873.1 121592977 4673890 571414..572862 1 NC_008782.1 KEGG: nfa:nfa2110 hypothetical protein; membrane protein 572862 4673890 Ajs_0547 Acidovorax sp. JS42 membrane protein YP_984873.1 571414 D 232721 CDS YP_984874.1 121592978 4673867 572939..574018 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 574018 4673867 Ajs_0548 Acidovorax sp. JS42 integrase catalytic subunit YP_984874.1 572939 D 232721 CDS YP_984875.1 121592979 4673898 574053..575018 1 NC_008782.1 PFAM: glycosyl transferase, family 2; KEGG: zmo:ZMO0947 hypothetical protein; glycosyl transferase family protein 575018 4673898 Ajs_0549 Acidovorax sp. JS42 glycosyl transferase family protein YP_984875.1 574053 D 232721 CDS YP_984876.1 121592980 4673899 575015..575398 1 NC_008782.1 PFAM: GtrA family protein; KEGG: ret:RHE_CH00273 hypothetical conserved membrane protein; GtrA family protein 575398 4673899 Ajs_0550 Acidovorax sp. JS42 GtrA family protein YP_984876.1 575015 D 232721 CDS YP_984877.1 121592981 4673858 575681..576832 1 NC_008782.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bth:BT3376 nucleotide sugar transaminase; DegT/DnrJ/EryC1/StrS aminotransferase 576832 4673858 Ajs_0551 Acidovorax sp. JS42 DegT/DnrJ/EryC1/StrS aminotransferase YP_984877.1 575681 D 232721 CDS YP_984878.1 121592982 4673258 577232..579193 1 NC_008782.1 PFAM: TonB-dependent receptor, plug; KEGG: rfr:Rfer_2036 TonB-dependent receptor; TonB-dependent receptor, plug 579193 4673258 Ajs_0552 Acidovorax sp. JS42 TonB-dependent receptor, plug YP_984878.1 577232 D 232721 CDS YP_984879.1 121592983 4673926 579205..580149 1 NC_008782.1 KEGG: rfr:Rfer_2037 hypothetical protein; hypothetical protein 580149 4673926 Ajs_0553 Acidovorax sp. JS42 hypothetical protein YP_984879.1 579205 D 232721 CDS YP_984880.1 121592984 4673933 580146..582173 1 NC_008782.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 582173 4673933 Ajs_0554 Acidovorax sp. JS42 integral membrane sensor hybrid histidine kinase YP_984880.1 580146 D 232721 CDS YP_984881.1 121592985 4673951 582184..582882 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mes:Meso_0341 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 582882 4673951 Ajs_0555 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_984881.1 582184 D 232721 CDS YP_984882.1 121592986 4673948 582919..583968 1 NC_008782.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_4042 glycosyl transferase, family 2; glycosyl transferase family protein 583968 4673948 Ajs_0556 Acidovorax sp. JS42 glycosyl transferase family protein YP_984882.1 582919 D 232721 CDS YP_984883.1 121592987 4673970 583986..585107 1 NC_008782.1 PFAM: acyltransferase 3; KEGG: rru:Rru_A2715 acyltransferase 3; acyltransferase 3 585107 4673970 Ajs_0557 Acidovorax sp. JS42 acyltransferase 3 YP_984883.1 583986 D 232721 CDS YP_984884.1 121592988 4673978 585393..591035 1 NC_008782.1 KEGG: ava:Ava_4160 VCBS; hypothetical protein 591035 4673978 Ajs_0558 Acidovorax sp. JS42 hypothetical protein YP_984884.1 585393 D 232721 CDS YP_984885.1 121592989 4673980 591448..592710 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: syf:Synpcc7942_1625 probable glycosyltransferase; group 1 glycosyl transferase 592710 4673980 Ajs_0559 Acidovorax sp. JS42 group 1 glycosyl transferase YP_984885.1 591448 D 232721 CDS YP_984886.1 121592990 4674029 592732..592977 1 NC_008782.1 hypothetical protein 592977 4674029 Ajs_0560 Acidovorax sp. JS42 hypothetical protein YP_984886.1 592732 D 232721 CDS YP_984887.1 121592991 4673985 593025..593528 1 NC_008782.1 KEGG: ccr:CC3052 hypothetical protein; hypothetical protein 593528 4673985 Ajs_0561 Acidovorax sp. JS42 hypothetical protein YP_984887.1 593025 D 232721 CDS YP_984888.1 121592992 4673988 593581..594693 1 NC_008782.1 PFAM: protein of unknown function DUF1568; KEGG: eba:ebA1554 hypothetical transposase; hypothetical protein 594693 4673988 Ajs_0562 Acidovorax sp. JS42 hypothetical protein YP_984888.1 593581 D 232721 CDS YP_984889.1 121592993 4673987 594690..595211 1 NC_008782.1 hypothetical protein 595211 4673987 Ajs_0563 Acidovorax sp. JS42 hypothetical protein YP_984889.1 594690 D 232721 CDS YP_984890.1 121592994 4673999 complement(595154..595924) 1 NC_008782.1 KEGG: bcn:Bcen_2656 hypothetical protein; hypothetical protein 595924 4673999 Ajs_0564 Acidovorax sp. JS42 hypothetical protein YP_984890.1 595154 R 232721 CDS YP_984891.1 121592995 4673991 complement(596144..596392) 1 NC_008782.1 hypothetical protein 596392 4673991 Ajs_0565 Acidovorax sp. JS42 hypothetical protein YP_984891.1 596144 R 232721 CDS YP_984892.1 121592996 4674006 596602..597951 1 NC_008782.1 KEGG: tdn:Tmden_1855 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 597951 4674006 Ajs_0566 Acidovorax sp. JS42 DNA-cytosine methyltransferase YP_984892.1 596602 D 232721 CDS YP_984893.1 121592997 4674030 complement(598013..598489) 1 NC_008782.1 KEGG: nmu:Nmul_A0918 hypothetical protein; hypothetical protein 598489 4674030 Ajs_0567 Acidovorax sp. JS42 hypothetical protein YP_984893.1 598013 R 232721 CDS YP_984894.1 121592998 4674037 complement(598489..598941) 1 NC_008782.1 KEGG: nmu:Nmul_A0917 hypothetical protein; hypothetical protein 598941 4674037 Ajs_0568 Acidovorax sp. JS42 hypothetical protein YP_984894.1 598489 R 232721 CDS YP_984895.1 121592999 4673904 598999..599304 1 NC_008782.1 KEGG: wol:WD0572 hypothetical protein; hypothetical protein 599304 4673904 Ajs_0569 Acidovorax sp. JS42 hypothetical protein YP_984895.1 598999 D 232721 CDS YP_984896.1 121593000 4673932 599542..599994 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein 599994 4673932 Ajs_0570 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_984896.1 599542 D 232721 CDS YP_984897.1 121593001 4673934 600015..600326 1 NC_008782.1 PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein 600326 4673934 Ajs_0571 Acidovorax sp. JS42 IS66 Orf2 family protein YP_984897.1 600015 D 232721 CDS YP_984898.1 121593002 4673882 600407..601921 1 NC_008782.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 601921 4673882 Ajs_0572 Acidovorax sp. JS42 transposase IS66 YP_984898.1 600407 D 232721 CDS YP_984899.1 121593003 4673918 602919..604310 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_2203 ISRSO17-transposase protein; transposase, IS4 family protein 604310 4673918 Ajs_0574 Acidovorax sp. JS42 transposase, IS4 family protein YP_984899.1 602919 D 232721 CDS YP_984900.1 121593004 4673983 605614..606702 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 606702 4673983 Ajs_0576 Acidovorax sp. JS42 transposase, IS4 family protein YP_984900.1 605614 D 232721 CDS YP_984901.1 121593005 4673359 607304..608860 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: cch:Cag_0447 hypothetical protein; group 1 glycosyl transferase 608860 4673359 Ajs_0578 Acidovorax sp. JS42 group 1 glycosyl transferase YP_984901.1 607304 D 232721 CDS YP_984902.1 121593006 4673379 complement(608924..609481) 1 NC_008782.1 KEGG: ccr:CC3052 hypothetical protein; hypothetical protein 609481 4673379 Ajs_0579 Acidovorax sp. JS42 hypothetical protein YP_984902.1 608924 R 232721 CDS YP_984903.1 121593007 4673398 complement(609487..610338) 1 NC_008782.1 PFAM: SapC family protein; KEGG: eba:ebA1573 SapC family protein; SapC family protein 610338 4673398 Ajs_0580 Acidovorax sp. JS42 SapC family protein YP_984903.1 609487 R 232721 CDS YP_984904.1 121593008 4673418 610763..611377 1 NC_008782.1 KEGG: noc:Noc_2211 transposase, IS605 OrfB; hypothetical protein 611377 4673418 Ajs_0581 Acidovorax sp. JS42 hypothetical protein YP_984904.1 610763 D 232721 CDS YP_984905.1 121593009 4673544 611374..613119 1 NC_008782.1 KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 613119 4673544 Ajs_0582 Acidovorax sp. JS42 type I secretion system ATPase YP_984905.1 611374 D 232721 CDS YP_984906.1 121593010 4673547 613154..614878 1 NC_008782.1 KEGG: ppu:PP_2560 transport protein HasD, putative; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 614878 4673547 Ajs_0583 Acidovorax sp. JS42 type I secretion system ATPase YP_984906.1 613154 D 232721 CDS YP_984907.1 121593011 4673553 614930..616297 1 NC_008782.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_1346 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 616297 4673553 Ajs_0584 Acidovorax sp. JS42 HlyD family type I secretion membrane fusion protein YP_984907.1 614930 D 232721 CDS YP_984908.1 121593012 4673565 616302..617672 1 NC_008782.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_3926 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 617672 4673565 Ajs_0585 Acidovorax sp. JS42 TolC family type I secretion outer membrane protein YP_984908.1 616302 D 232721 CDS YP_984909.1 121593013 4673570 617710..618792 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; group 1 glycosyl transferase 618792 4673570 Ajs_0586 Acidovorax sp. JS42 group 1 glycosyl transferase YP_984909.1 617710 D 232721 CDS YP_984910.1 121593014 4673601 618857..619957 1 NC_008782.1 PFAM: glycosyl transferase, family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4; glycosyl transferase family protein 619957 4673601 Ajs_0587 Acidovorax sp. JS42 glycosyl transferase family protein YP_984910.1 618857 D 232721 CDS YP_984911.1 121593015 4673636 620027..620917 1 NC_008782.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 620917 4673636 Ajs_0588 Acidovorax sp. JS42 acetylglutamate kinase YP_984911.1 620027 D 232721 CDS YP_984912.1 121593016 4673654 621110..621754 1 NC_008782.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 621754 slmA 4673654 slmA Acidovorax sp. JS42 nucleoid occlusion protein YP_984912.1 621110 D 232721 CDS YP_984913.1 121593017 4673670 complement(622021..623001) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 623001 4673670 Ajs_0590 Acidovorax sp. JS42 transposase, IS4 family protein YP_984913.1 622021 R 232721 CDS YP_984914.1 121593018 4673689 623150..623815 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family; TetR family transcriptional regulator 623815 4673689 Ajs_0591 Acidovorax sp. JS42 TetR family transcriptional regulator YP_984914.1 623150 D 232721 CDS YP_984915.1 121593019 4673691 623880..625676 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 625676 4673691 Ajs_0592 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_984915.1 623880 D 232721 CDS YP_984916.1 121593020 4673693 625729..626163 1 NC_008782.1 KEGG: rfr:Rfer_3518 hypothetical protein; hypothetical protein 626163 4673693 Ajs_0593 Acidovorax sp. JS42 hypothetical protein YP_984916.1 625729 D 232721 CDS YP_984917.1 121593021 4673706 626264..628666 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3517 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 628666 4673706 Ajs_0594 Acidovorax sp. JS42 3-hydroxyacyl-CoA dehydrogenase YP_984917.1 626264 D 232721 CDS YP_984918.1 121593022 4673733 628688..629884 1 NC_008782.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 629884 4673733 Ajs_0595 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_984918.1 628688 D 232721 CDS YP_984919.1 121593023 4673315 629965..630861 1 NC_008782.1 KEGG: pau:PA14_40820 putative hydrolase; putative hydrolase 630861 4673315 Ajs_0596 Acidovorax sp. JS42 putative hydrolase YP_984919.1 629965 D 232721 CDS YP_984920.1 121593024 4673917 630887..631729 1 NC_008782.1 KEGG: pol:Bpro_3933 hypothetical protein; hypothetical protein 631729 4673917 Ajs_0597 Acidovorax sp. JS42 hypothetical protein YP_984920.1 630887 D 232721 CDS YP_984921.1 121593025 4673876 631747..632523 1 NC_008782.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 632523 4673876 Ajs_0598 Acidovorax sp. JS42 enoyl-CoA hydratase YP_984921.1 631747 D 232721 CDS YP_984922.1 121593026 4673912 632703..633185 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_3505 phenylacetic acid degradation-related protein; hypothetical protein 633185 4673912 Ajs_0599 Acidovorax sp. JS42 hypothetical protein YP_984922.1 632703 D 232721 CDS YP_984923.1 121593027 4673921 633373..633927 1 NC_008782.1 PFAM: protein of unknown function DUF583; KEGG: rfr:Rfer_3896 protein of unknown function DUF583; hypothetical protein 633927 4673921 Ajs_0600 Acidovorax sp. JS42 hypothetical protein YP_984923.1 633373 D 232721 CDS YP_984924.1 121593028 4673905 complement(633980..634411) 1 NC_008782.1 PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily; thioesterase superfamily protein 634411 4673905 Ajs_0601 Acidovorax sp. JS42 thioesterase superfamily protein YP_984924.1 633980 R 232721 CDS YP_984925.1 121593029 4673935 634454..636265 1 NC_008782.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related; ABC transporter-like protein 636265 4673935 Ajs_0602 Acidovorax sp. JS42 ABC transporter-like protein YP_984925.1 634454 D 232721 CDS YP_984926.1 121593030 4674012 636320..636634 1 NC_008782.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: rfr:Rfer_3445 hypothetical protein; MazG nucleotide pyrophosphohydrolase 636634 4674012 Ajs_0603 Acidovorax sp. JS42 MazG nucleotide pyrophosphohydrolase YP_984926.1 636320 D 232721 CDS YP_984927.1 121593031 4674080 complement(636748..637779) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 637779 4674080 Ajs_0604 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_984927.1 636748 R 232721 CDS YP_984928.1 121593032 4674706 complement(637813..639111) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rme:Rmet_1149 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 639111 4674706 Ajs_0605 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_984928.1 637813 R 232721 CDS YP_984929.1 121593033 4674692 complement(639108..639698) 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 639698 4674692 Ajs_0606 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_984929.1 639108 R 232721 CDS YP_984930.1 121593034 4674673 639927..640865 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator 640865 4674673 Ajs_0607 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984930.1 639927 D 232721 CDS YP_984931.1 121593035 4674656 641047..641937 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A2361 extracellular solute-binding protein, family 3; extracellular solute-binding protein 641937 4674656 Ajs_0608 Acidovorax sp. JS42 extracellular solute-binding protein YP_984931.1 641047 D 232721 CDS YP_984932.1 121593036 4674564 642060..642959 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3; extracellular solute-binding protein 642959 4674564 Ajs_0609 Acidovorax sp. JS42 extracellular solute-binding protein YP_984932.1 642060 D 232721 CDS YP_984933.1 121593037 4674422 643080..643832 1 NC_008782.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 643832 4674422 Ajs_0610 Acidovorax sp. JS42 polar amino acid ABC transporter inner membrane subunit YP_984933.1 643080 D 232721 CDS YP_984934.1 121593038 4674493 643834..644505 1 NC_008782.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 644505 4674493 Ajs_0611 Acidovorax sp. JS42 polar amino acid ABC transporter inner membrane subunit YP_984934.1 643834 D 232721 CDS YP_984935.1 121593039 4674486 644528..645265 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related; ABC transporter-like protein 645265 4674486 Ajs_0612 Acidovorax sp. JS42 ABC transporter-like protein YP_984935.1 644528 D 232721 CDS YP_984936.1 121593040 4674437 complement(645541..646527) 1 NC_008782.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 646527 4674437 Ajs_0613 Acidovorax sp. JS42 ornithine cyclodeaminase YP_984936.1 645541 R 232721 CDS YP_984937.1 121593041 4674453 646706..647137 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: reu:Reut_A2673 helix-turn-helix, fis-type; AsnC family transcriptional regulator 647137 4674453 Ajs_0614 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_984937.1 646706 D 232721 CDS YP_984938.1 121593042 4674454 complement(647163..647819) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: dar:Daro_3327 cytochrome c, class I; class I cytochrome c 647819 4674454 Ajs_0615 Acidovorax sp. JS42 class I cytochrome c YP_984938.1 647163 R 232721 CDS YP_984939.1 121593043 4674440 complement(647916..648752) 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: rfr:Rfer_0644 HAD-superfamily hydrolase subfamily IIB; HAD family hydrolase 648752 4674440 Ajs_0616 Acidovorax sp. JS42 HAD family hydrolase YP_984939.1 647916 R 232721 CDS YP_984940.1 121593044 4674429 complement(648770..650395) 1 NC_008782.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 650395 prfC 4674429 prfC Acidovorax sp. JS42 peptide chain release factor 3 YP_984940.1 648770 R 232721 CDS YP_984941.1 121593045 4674377 650682..652112 1 NC_008782.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 652112 4674377 Ajs_0618 Acidovorax sp. JS42 S-adenosyl-L-homocysteine hydrolase YP_984941.1 650682 D 232721 CDS YP_984942.1 121593046 4674352 652225..653223 1 NC_008782.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 653223 4674352 Ajs_0619 Acidovorax sp. JS42 ribosomal RNA methyltransferase RrmJ/FtsJ YP_984942.1 652225 D 232721 CDS YP_984943.1 121593047 4674338 653220..654059 1 NC_008782.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 654059 4674338 Ajs_0620 Acidovorax sp. JS42 5,10-methylenetetrahydrofolate reductase YP_984943.1 653220 D 232721 CDS YP_984944.1 121593048 4674317 654070..654753 1 NC_008782.1 hypothetical protein 654753 4674317 Ajs_0621 Acidovorax sp. JS42 hypothetical protein YP_984944.1 654070 D 232721 CDS YP_984945.1 121593049 4674302 654962..655489 1 NC_008782.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A; rare lipoprotein A 655489 4674302 Ajs_0622 Acidovorax sp. JS42 rare lipoprotein A YP_984945.1 654962 D 232721 CDS YP_984946.1 121593050 4674301 complement(655534..656424) 1 NC_008782.1 PFAM: protein of unknown function DUF519; KEGG: rfr:Rfer_0720 protein of unknown function DUF519; hypothetical protein 656424 4674301 Ajs_0623 Acidovorax sp. JS42 hypothetical protein YP_984946.1 655534 R 232721 CDS YP_984947.1 121593051 4674286 656544..658526 1 NC_008782.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase; protein kinase 658526 4674286 Ajs_0624 Acidovorax sp. JS42 protein kinase YP_984947.1 656544 D 232721 CDS YP_984948.1 121593052 4674282 658680..659108 1 NC_008782.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 659108 rplM 4674282 rplM Acidovorax sp. JS42 50S ribosomal protein L13 YP_984948.1 658680 D 232721 CDS YP_984949.1 121593053 4674271 659119..659511 1 NC_008782.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 659511 rpsI 4674271 rpsI Acidovorax sp. JS42 30S ribosomal protein S9 YP_984949.1 659119 D 232721 CDS YP_984950.1 121593054 4674262 660423..660821 1 NC_008782.1 PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_4110 protein of unknown function DUF583; hypothetical protein 660821 4674262 Ajs_0628 Acidovorax sp. JS42 hypothetical protein YP_984950.1 660423 D 232721 CDS YP_984951.1 121593055 4674259 660882..661256 1 NC_008782.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 661256 4674259 Ajs_0629 Acidovorax sp. JS42 iron-sulfur cluster insertion protein ErpA YP_984951.1 660882 D 232721 CDS YP_984952.1 121593056 4674248 complement(661319..662440) 1 NC_008782.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 662440 anmK 4674248 anmK Acidovorax sp. JS42 anhydro-N-acetylmuramic acid kinase YP_984952.1 661319 R 232721 CDS YP_984953.1 121593057 4674202 complement(662453..663817) 1 NC_008782.1 PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B; peptidase M23B 663817 4674202 Ajs_0631 Acidovorax sp. JS42 peptidase M23B YP_984953.1 662453 R 232721 CDS YP_984954.1 121593058 4674122 664011..665243 1 NC_008782.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 665243 4674122 Ajs_0632 Acidovorax sp. JS42 tyrosyl-tRNA synthetase YP_984954.1 664011 D 232721 CDS YP_984955.1 121593059 4674187 complement(665314..665835) 1 NC_008782.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_0766 methyl-accepting chemotaxis sensory transducer; hemerythrin-like metal-binding protein 665835 4674187 Ajs_0633 Acidovorax sp. JS42 hemerythrin-like metal-binding protein YP_984955.1 665314 R 232721 CDS YP_984956.1 121593060 4674159 complement(665988..666998) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family; LysR family transcriptional regulator 666998 4674159 Ajs_0634 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984956.1 665988 R 232721 CDS YP_984957.1 121593061 4673629 667145..667591 1 NC_008782.1 KEGG: rfr:Rfer_1085 hypothetical protein; hypothetical protein 667591 4673629 Ajs_0635 Acidovorax sp. JS42 hypothetical protein YP_984957.1 667145 D 232721 CDS YP_984958.1 121593062 4673286 667783..669213 1 NC_008782.1 KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase 669213 4673286 Ajs_0636 Acidovorax sp. JS42 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_984958.1 667783 D 232721 CDS YP_984959.1 121593063 4673586 669218..669988 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dge:Dgeo_2525 multi-sensor signal transduction histidine kinase; histidine kinase 669988 4673586 Ajs_0637 Acidovorax sp. JS42 histidine kinase YP_984959.1 669218 D 232721 CDS YP_984960.1 121593064 4673566 complement(670023..670364) 1 NC_008782.1 KEGG: csa:Csal_1427 transcriptional regulatory protein, MerR family; MerR family transcriptional regulator 670364 4673566 Ajs_0638 Acidovorax sp. JS42 MerR family transcriptional regulator YP_984960.1 670023 R 232721 CDS YP_984961.1 121593065 4673475 complement(670367..671362) 1 NC_008782.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA2728 curved DNA-binding protein; heat shock protein DnaJ domain-containing protein 671362 4673475 Ajs_0639 Acidovorax sp. JS42 heat shock protein DnaJ domain-containing protein YP_984961.1 670367 R 232721 CDS YP_984962.1 121593066 4673449 complement(671488..671979) 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: mxa:MXAN_0502 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 671979 4673449 Ajs_0640 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_984962.1 671488 R 232721 CDS YP_984963.1 121593067 4673435 672116..674026 1 NC_008782.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 674026 4673435 Ajs_0641 Acidovorax sp. JS42 glucosamine--fructose-6-phosphate aminotransferase YP_984963.1 672116 D 232721 CDS YP_984964.1 121593068 4673234 complement(674181..674816) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cvi:CV0714 hypothetical protein; NmrA family protein 674816 4673234 Ajs_0642 Acidovorax sp. JS42 NmrA family protein YP_984964.1 674181 R 232721 CDS YP_984965.1 121593069 4673416 674932..675834 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV0715 transcriptional regulator PtxR; LysR family transcriptional regulator 675834 4673416 Ajs_0643 Acidovorax sp. JS42 LysR family transcriptional regulator YP_984965.1 674932 D 232721 CDS YP_984966.1 121593070 4673402 676689..677750 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA3950 putative zinc-binding dehydrogenase; alcohol dehydrogenase 677750 4673402 Ajs_0645 Acidovorax sp. JS42 alcohol dehydrogenase YP_984966.1 676689 D 232721 CDS YP_984967.1 121593071 4673384 complement(677747..678016) 1 NC_008782.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 678016 infA 4673384 infA Acidovorax sp. JS42 translation initiation factor IF-1 YP_984967.1 677747 R 232721 CDS YP_984968.1 121593072 4673355 678520..681933 1 NC_008782.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: mes:Meso_1942 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 681933 4673355 Ajs_0647 Acidovorax sp. JS42 multi-sensor hybrid histidine kinase YP_984968.1 678520 D 232721 CDS YP_984969.1 121593073 4673354 681977..682810 1 NC_008782.1 PFAM: MCP methyltransferase, CheR-type; KEGG: xcb:XC_3058 chemotaxis protein; MCP methyltransferase, CheR-type 682810 4673354 Ajs_0648 Acidovorax sp. JS42 MCP methyltransferase, CheR-type YP_984969.1 681977 D 232721 CDS YP_984970.1 121593074 4672725 682807..683406 1 NC_008782.1 PFAM: CheB methylesterase; KEGG: xac:XAC1280 protein-glutamate methylesterase; CheB methylesterase 683406 4672725 Ajs_0649 Acidovorax sp. JS42 CheB methylesterase YP_984970.1 682807 D 232721 CDS YP_984971.1 121593075 4672723 683403..684551 1 NC_008782.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: xcb:XC_3060 two-component system regulatory protein; response regulator receiver sensor signal transduction histidine kinase 684551 4672723 Ajs_0650 Acidovorax sp. JS42 response regulator receiver sensor signal transduction histidine kinase YP_984971.1 683403 D 232721 CDS YP_984972.1 121593076 4672887 complement(684604..685020) 1 NC_008782.1 PFAM: response regulator receiver; KEGG: syw:SYNW0947 two-component response regulator, phosphate; response regulator receiver protein 685020 4672887 Ajs_0651 Acidovorax sp. JS42 response regulator receiver protein YP_984972.1 684604 R 232721 CDS YP_984973.1 121593077 4672869 complement(685135..685797) 1 NC_008782.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase 685797 4672869 Ajs_0652 Acidovorax sp. JS42 DNA-N1-methyladenine dioxygenase YP_984973.1 685135 R 232721 CDS YP_984974.1 121593078 4672694 685981..687555 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3284 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 687555 4672694 Ajs_0653 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_984974.1 685981 D 232721 CDS YP_984975.1 121593079 4672844 687627..688289 1 NC_008782.1 PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase; DSBA oxidoreductase 688289 4672844 Ajs_0654 Acidovorax sp. JS42 DSBA oxidoreductase YP_984975.1 687627 D 232721 CDS YP_984976.1 121593080 4672836 complement(688358..688864) 1 NC_008782.1 PFAM: CreA family protein; KEGG: rme:Rmet_4747 CreA; CreA family protein 688864 4672836 Ajs_0655 Acidovorax sp. JS42 CreA family protein YP_984976.1 688358 R 232721 CDS YP_984977.1 121593081 4672773 complement(688861..691446) 1 NC_008782.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 691446 4672773 Ajs_0656 Acidovorax sp. JS42 cyanophycin synthetase YP_984977.1 688861 R 232721 CDS YP_984978.1 121593082 4672620 complement(691541..693724) 1 NC_008782.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 693724 4672620 Ajs_0657 Acidovorax sp. JS42 cyanophycin synthetase YP_984978.1 691541 R 232721 CDS YP_984979.1 121593083 4672030 694036..696288 1 NC_008782.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related; ABC transporter-like protein 696288 4672030 Ajs_0658 Acidovorax sp. JS42 ABC transporter-like protein YP_984979.1 694036 D 232721 CDS YP_984980.1 121593084 4672029 696305..696811 1 NC_008782.1 KEGG: pol:Bpro_1418 hypothetical protein; hypothetical protein 696811 4672029 Ajs_0659 Acidovorax sp. JS42 hypothetical protein YP_984980.1 696305 D 232721 CDS YP_984981.1 121593085 4672351 697007..697447 1 NC_008782.1 KEGG: rfr:Rfer_0823 hypothetical protein; hypothetical protein 697447 4672351 Ajs_0660 Acidovorax sp. JS42 hypothetical protein YP_984981.1 697007 D 232721 CDS YP_984982.1 121593086 4672343 complement(697548..697925) 1 NC_008782.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein; signal transduction protein 697925 4672343 Ajs_0661 Acidovorax sp. JS42 signal transduction protein YP_984982.1 697548 R 232721 CDS YP_984983.1 121593087 4672298 complement(697957..698898) 1 NC_008782.1 PFAM: 5-nucleotidase; KEGG: rfr:Rfer_0734 5-nucleotidase; 5-nucleotidase 698898 4672298 Ajs_0662 Acidovorax sp. JS42 5-nucleotidase YP_984983.1 697957 R 232721 CDS YP_984984.1 121593088 4672257 complement(698895..700124) 1 NC_008782.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pol:Bpro_1331 general secretion pathway protein F; general secretion pathway protein F 700124 4672257 Ajs_0663 Acidovorax sp. JS42 general secretion pathway protein F YP_984984.1 698895 R 232721 CDS YP_984985.1 121593089 4672224 complement(700186..701217) 1 NC_008782.1 PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like; luciferase family protein 701217 4672224 Ajs_0664 Acidovorax sp. JS42 luciferase family protein YP_984985.1 700186 R 232721 CDS YP_984986.1 121593090 4672002 701414..701938 1 NC_008782.1 hypothetical protein 701938 4672002 Ajs_0665 Acidovorax sp. JS42 hypothetical protein YP_984986.1 701414 D 232721 CDS YP_984987.1 121593091 4672001 complement(702069..703457) 1 NC_008782.1 KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E 703457 4672001 Ajs_0666 Acidovorax sp. JS42 general secretory pathway protein E YP_984987.1 702069 R 232721 CDS YP_984988.1 121593092 4672000 complement(703470..705815) 1 NC_008782.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rfr:Rfer_0542 type II and III secretion system protein; general secretion pathway protein D 705815 4672000 Ajs_0667 Acidovorax sp. JS42 general secretion pathway protein D YP_984988.1 703470 R 232721 CDS YP_984989.1 121593093 4671954 complement(705820..706632) 1 NC_008782.1 KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein 706632 4671954 Ajs_0668 Acidovorax sp. JS42 putative general secretory pathway N transmembrane protein YP_984989.1 705820 R 232721 CDS YP_984990.1 121593094 4672117 complement(706649..707194) 1 NC_008782.1 KEGG: pol:Bpro_1327 hypothetical protein; hypothetical protein 707194 4672117 Ajs_0669 Acidovorax sp. JS42 hypothetical protein YP_984990.1 706649 R 232721 CDS YP_984991.1 121593095 4672109 complement(707191..708420) 1 NC_008782.1 PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein; general secretion pathway L 708420 4672109 Ajs_0670 Acidovorax sp. JS42 general secretion pathway L YP_984991.1 707191 R 232721 CDS YP_984992.1 121593096 4671953 complement(708480..709625) 1 NC_008782.1 PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K; general secretion pathway protein K 709625 4671953 Ajs_0671 Acidovorax sp. JS42 general secretion pathway protein K YP_984992.1 708480 R 232721 CDS YP_984993.1 121593097 4671766 complement(709622..710305) 1 NC_008782.1 KEGG: rfr:Rfer_0537 methylation; hypothetical protein 710305 4671766 Ajs_0672 Acidovorax sp. JS42 hypothetical protein YP_984993.1 709622 R 232721 CDS YP_984994.1 121593098 4671497 complement(710475..710867) 1 NC_008782.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rfr:Rfer_0536 general secretion pathway protein I; general secretion pathway protein I 710867 4671497 Ajs_0673 Acidovorax sp. JS42 general secretion pathway protein I YP_984994.1 710475 R 232721 CDS YP_984995.1 121593099 4671753 complement(710864..711412) 1 NC_008782.1 TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H; general secretion pathway protein H 711412 4671753 Ajs_0674 Acidovorax sp. JS42 general secretion pathway protein H YP_984995.1 710864 R 232721 CDS YP_984996.1 121593100 4671737 complement(711446..711925) 1 NC_008782.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pol:Bpro_1321 general secretion pathway protein G; general secretion pathway protein G 711925 4671737 Ajs_0675 Acidovorax sp. JS42 general secretion pathway protein G YP_984996.1 711446 R 232721 CDS YP_984997.1 121593101 4671722 711949..712398 1 NC_008782.1 KEGG: pol:Bpro_1320 hypothetical protein; hypothetical protein 712398 4671722 Ajs_0676 Acidovorax sp. JS42 hypothetical protein YP_984997.1 711949 D 232721 CDS YP_984998.1 121593102 4671704 complement(712455..713066) 1 NC_008782.1 PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase; phosphoglycerate mutase 713066 4671704 Ajs_0677 Acidovorax sp. JS42 phosphoglycerate mutase YP_984998.1 712455 R 232721 CDS YP_984999.1 121593103 4671693 complement(713063..713875) 1 NC_008782.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase; cobalamin-5'-phosphate synthase 713875 4671693 Ajs_0678 Acidovorax sp. JS42 cobalamin-5'-phosphate synthase YP_984999.1 713063 R 232721 CDS YP_985000.1 121593104 4671445 complement(713942..715504) 1 NC_008782.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 715504 4671445 Ajs_0679 Acidovorax sp. JS42 threonine dehydratase YP_985000.1 713942 R 232721 CDS YP_985001.1 121593105 4671638 715828..716277 1 NC_008782.1 PFAM: OsmC family protein; KEGG: rfr:Rfer_0732 OsmC-like protein; OsmC family protein 716277 4671638 Ajs_0680 Acidovorax sp. JS42 OsmC family protein YP_985001.1 715828 D 232721 CDS YP_985002.1 121593106 4671535 complement(716294..716911) 1 NC_008782.1 KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein 716911 4671535 Ajs_0681 Acidovorax sp. JS42 putative ubiquinone biosynthesis protein YP_985002.1 716294 R 232721 CDS YP_985003.1 121593107 4670550 717222..718310 1 NC_008782.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type; porin 718310 4670550 Ajs_0682 Acidovorax sp. JS42 porin YP_985003.1 717222 D 232721 CDS YP_985004.1 121593108 4671008 718543..719667 1 NC_008782.1 PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type; porin 719667 4671008 Ajs_0683 Acidovorax sp. JS42 porin YP_985004.1 718543 D 232721 CDS YP_985005.1 121593109 4670545 721449..723029 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic); extracellular solute-binding protein 723029 4670545 Ajs_0685 Acidovorax sp. JS42 extracellular solute-binding protein YP_985005.1 721449 D 232721 CDS YP_985006.1 121593110 4670544 723177..724160 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 724160 4670544 Ajs_0686 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985006.1 723177 D 232721 CDS YP_985007.1 121593111 4670935 724162..725388 1 NC_008782.1 KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 725388 4670935 Ajs_0687 Acidovorax sp. JS42 amidohydrolase YP_985007.1 724162 D 232721 CDS YP_985008.1 121593112 4670902 725429..727000 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5; extracellular solute-binding protein 727000 4670902 Ajs_0688 Acidovorax sp. JS42 extracellular solute-binding protein YP_985008.1 725429 D 232721 CDS YP_985009.1 121593113 4670885 727047..727958 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 727958 4670885 Ajs_0689 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985009.1 727047 D 232721 CDS YP_985010.1 121593114 4670881 728108..729124 1 NC_008782.1 KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 729124 4670881 Ajs_0690 Acidovorax sp. JS42 oligopeptide/dipeptide ABC transporter ATPase YP_985010.1 728108 D 232721 CDS YP_985011.1 121593115 4670848 729121..730155 1 NC_008782.1 KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 730155 4670848 Ajs_0691 Acidovorax sp. JS42 oligopeptide/dipeptide ABC transporter ATPase YP_985011.1 729121 D 232721 CDS YP_985012.1 121593116 4670526 730333..732246 1 NC_008782.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mxa:MXAN_2236 putative 5'-nucleotidase; 5'-nucleotidase 732246 4670526 Ajs_0692 Acidovorax sp. JS42 5'-nucleotidase YP_985012.1 730333 D 232721 CDS YP_985013.1 121593117 4670521 732325..732819 1 NC_008782.1 PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL; PBP family phospholipid-binding protein 732819 4670521 Ajs_0693 Acidovorax sp. JS42 PBP family phospholipid-binding protein YP_985013.1 732325 D 232721 CDS YP_985014.1 121593118 4670764 complement(733087..733932) 1 NC_008782.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 733932 4670764 Ajs_0694 Acidovorax sp. JS42 RpiR family transcriptional regulator YP_985014.1 733087 R 232721 CDS YP_985015.1 121593119 4670760 complement(733926..735401) 1 NC_008782.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 735401 4670760 Ajs_0695 Acidovorax sp. JS42 glucose-6-phosphate 1-dehydrogenase YP_985015.1 733926 R 232721 CDS YP_985016.1 121593120 4670758 735597..736547 1 NC_008782.1 KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 736547 4670758 Ajs_0696 Acidovorax sp. JS42 transaldolase B YP_985016.1 735597 D 232721 CDS YP_985017.1 121593121 4670512 736544..738160 1 NC_008782.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 738160 pgi 4670512 pgi Acidovorax sp. JS42 glucose-6-phosphate isomerase YP_985017.1 736544 D 232721 CDS YP_985018.1 121593122 4670510 complement(738191..739357) 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein; diguanylate cyclase 739357 4670510 Ajs_0698 Acidovorax sp. JS42 diguanylate cyclase YP_985018.1 738191 R 232721 CDS YP_985019.1 121593123 4670506 complement(739628..741268) 1 NC_008782.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 741268 groEL 4670506 groEL Acidovorax sp. JS42 chaperonin GroEL YP_985019.1 739628 R 232721 CDS YP_985020.1 121593124 4674724 complement(741359..741649) 1 NC_008782.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 741649 groES 4674724 groES Acidovorax sp. JS42 co-chaperonin GroES YP_985020.1 741359 R 232721 CDS YP_985021.1 121593125 4671187 complement(741860..742894) 1 NC_008782.1 TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: bam:Bamb_4267 cytidyltransferase-related domain; cytidyltransferase-like protein 742894 4671187 Ajs_0701 Acidovorax sp. JS42 cytidyltransferase-like protein YP_985021.1 741860 R 232721 CDS YP_985022.1 121593126 4671211 complement(742950..743846) 1 NC_008782.1 KEGG: rpb:RPB_2359 hypothetical protein; hypothetical protein 743846 4671211 Ajs_0702 Acidovorax sp. JS42 hypothetical protein YP_985022.1 742950 R 232721 CDS YP_985023.1 121593127 4670761 complement(743874..744059) 1 NC_008782.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328; hypothetical protein 744059 4670761 Ajs_0703 Acidovorax sp. JS42 hypothetical protein YP_985023.1 743874 R 232721 CDS YP_985024.1 121593128 4671073 complement(744190..744264) 1 NC_008782.1 hypothetical protein 744264 4671073 Ajs_0704 Acidovorax sp. JS42 hypothetical protein YP_985024.1 744190 R 232721 CDS YP_985025.1 121593129 4671101 complement(744840..746021) 1 NC_008782.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 746021 4671101 Ajs_0705 Acidovorax sp. JS42 S-adenosylmethionine synthetase YP_985025.1 744840 R 232721 CDS YP_985026.1 121593130 4671121 746154..747029 1 NC_008782.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: rfr:Rfer_3881 putative acyltransferase; lipid A biosynthesis acyltransferase 747029 4671121 Ajs_0706 Acidovorax sp. JS42 lipid A biosynthesis acyltransferase YP_985026.1 746154 D 232721 CDS YP_985027.1 121593131 4670566 747026..747898 1 NC_008782.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 747898 4670566 Ajs_0707 Acidovorax sp. JS42 lipid A biosynthesis acyltransferase YP_985027.1 747026 D 232721 CDS YP_985028.1 121593132 4671168 complement(747944..748873) 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_0770 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 748873 4671168 Ajs_0708 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_985028.1 747944 R 232721 CDS YP_985029.1 121593133 4671230 complement(748922..749710) 1 NC_008782.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 749710 engB 4671230 engB Acidovorax sp. JS42 ribosome biogenesis GTP-binding protein YsxC YP_985029.1 748922 R 232721 CDS YP_985030.1 121593134 4671840 749729..750367 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I; class I cytochrome c 750367 4671840 Ajs_0710 Acidovorax sp. JS42 class I cytochrome c YP_985030.1 749729 D 232721 CDS YP_985031.1 121593135 4671572 750536..752689 1 NC_008782.1 PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like; ResB family protein 752689 4671572 Ajs_0711 Acidovorax sp. JS42 ResB family protein YP_985031.1 750536 D 232721 CDS YP_985032.1 121593136 4671671 752686..754020 1 NC_008782.1 PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein; cytochrome c assembly protein 754020 4671671 Ajs_0712 Acidovorax sp. JS42 cytochrome c assembly protein YP_985032.1 752686 D 232721 CDS YP_985033.1 121593137 4671761 754112..755110 1 NC_008782.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 755110 4671761 Ajs_0713 Acidovorax sp. JS42 putative sulfite oxidase subunit YedY YP_985033.1 754112 D 232721 CDS YP_985034.1 121593138 4671796 755110..755769 1 NC_008782.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein 755769 4671796 Ajs_0714 Acidovorax sp. JS42 ferric reductase domain-containing protein YP_985034.1 755110 D 232721 CDS YP_985035.1 121593139 4671799 complement(755836..756672) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A0043 beta-lactamase-like; beta-lactamase domain-containing protein 756672 4671799 Ajs_0715 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_985035.1 755836 R 232721 CDS YP_985036.1 121593140 4671897 complement(756737..758032) 1 NC_008782.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase; diaminopimelate decarboxylase 758032 4671897 Ajs_0716 Acidovorax sp. JS42 diaminopimelate decarboxylase YP_985036.1 756737 R 232721 CDS YP_985037.1 121593141 4671992 complement(758029..758238) 1 NC_008782.1 hypothetical protein 758238 4671992 Ajs_0717 Acidovorax sp. JS42 hypothetical protein YP_985037.1 758029 R 232721 CDS YP_985038.1 121593142 4671927 complement(758289..758882) 1 NC_008782.1 PFAM: Resolvase, N-terminal domain; KEGG: eci:UTI89_C0920 putative DNA-invertase; resolvase domain-containing protein 758882 4671927 Ajs_0718 Acidovorax sp. JS42 resolvase domain-containing protein YP_985038.1 758289 R 232721 CDS YP_985039.1 121593143 4672390 complement(758978..760180) 1 NC_008782.1 PFAM: Zonular occludens toxin; KEGG: nme:NMB1626 hypothetical protein; zonular occludens toxin 760180 4672390 Ajs_0719 Acidovorax sp. JS42 zonular occludens toxin YP_985039.1 758978 R 232721 CDS YP_985040.1 121593144 4672433 complement(760177..760476) 1 NC_008782.1 hypothetical protein 760476 4672433 Ajs_0720 Acidovorax sp. JS42 hypothetical protein YP_985040.1 760177 R 232721 CDS YP_985041.1 121593145 4672515 complement(760473..761777) 1 NC_008782.1 KEGG: bps:BPSL3349 hypothetical protein; hypothetical protein 761777 4672515 Ajs_0721 Acidovorax sp. JS42 hypothetical protein YP_985041.1 760473 R 232721 CDS YP_985042.1 121593146 4672534 761952..762320 1 NC_008782.1 hypothetical protein 762320 4672534 Ajs_0722 Acidovorax sp. JS42 hypothetical protein YP_985042.1 761952 D 232721 CDS YP_985043.1 121593147 4672873 complement(762839..763147) 1 NC_008782.1 KEGG: ngo:NGO1270 conserved hypothetical protein, putative phage associated protein; putative phage associated protein 763147 4672873 Ajs_0723 Acidovorax sp. JS42 putative phage associated protein YP_985043.1 762839 R 232721 CDS YP_985044.1 121593148 4673045 complement(763180..764274) 1 NC_008782.1 PFAM: replication initiation factor; KEGG: nme:NMB1634 hypothetical protein; replication initiation factor 764274 4673045 Ajs_0724 Acidovorax sp. JS42 replication initiation factor YP_985044.1 763180 R 232721 CDS YP_985045.1 121593149 4673059 complement(764839..765123) 1 NC_008782.1 hypothetical protein 765123 4673059 Ajs_0725 Acidovorax sp. JS42 hypothetical protein YP_985045.1 764839 R 232721 CDS YP_985046.1 121593150 4673168 complement(765338..765865) 1 NC_008782.1 hypothetical protein 765865 4673168 Ajs_0726 Acidovorax sp. JS42 hypothetical protein YP_985046.1 765338 R 232721 CDS YP_985047.1 121593151 4673929 765868..766161 1 NC_008782.1 hypothetical protein 766161 4673929 Ajs_0727 Acidovorax sp. JS42 hypothetical protein YP_985047.1 765868 D 232721 CDS YP_985048.1 121593152 4673194 766161..766490 1 NC_008782.1 PFAM: Frataxin family protein; KEGG: rfr:Rfer_2917 frataxin-like; frataxin family protein 766490 4673194 Ajs_0728 Acidovorax sp. JS42 frataxin family protein YP_985048.1 766161 D 232721 CDS YP_985049.1 121593153 4673408 complement(766566..768950) 1 NC_008782.1 KEGG: rfr:Rfer_2918 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 768950 4673408 Ajs_0729 Acidovorax sp. JS42 1A family penicillin-binding protein YP_985049.1 766566 R 232721 CDS YP_985050.1 121593154 4673515 769214..770284 1 NC_008782.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 770284 4673515 Ajs_0730 Acidovorax sp. JS42 type IV pilus assembly protein PilM YP_985050.1 769214 D 232721 CDS YP_985051.1 121593155 4673686 770281..770892 1 NC_008782.1 PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly; fimbrial assembly family protein 770892 4673686 Ajs_0731 Acidovorax sp. JS42 fimbrial assembly family protein YP_985051.1 770281 D 232721 CDS YP_985052.1 121593156 4673752 770894..771568 1 NC_008782.1 PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO; pilus assembly protein PilO 771568 4673752 Ajs_0732 Acidovorax sp. JS42 pilus assembly protein PilO YP_985052.1 770894 D 232721 CDS YP_985053.1 121593157 4673788 771565..772116 1 NC_008782.1 PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ; pilus assembly protein, PilQ 772116 4673788 Ajs_0733 Acidovorax sp. JS42 pilus assembly protein, PilQ YP_985053.1 771565 D 232721 CDS YP_985054.1 121593158 4673838 772113..774203 1 NC_008782.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: rfr:Rfer_2923 type II and III secretion system protein; type IV pilus secretin PilQ 774203 4673838 Ajs_0734 Acidovorax sp. JS42 type IV pilus secretin PilQ YP_985054.1 772113 D 232721 CDS YP_985055.1 121593159 4673919 774275..775378 1 NC_008782.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 775378 aroB 4673919 aroB Acidovorax sp. JS42 3-dehydroquinate synthase YP_985055.1 774275 D 232721 CDS YP_985056.1 121593160 4673931 775436..776608 1 NC_008782.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 776608 4673931 Ajs_0736 Acidovorax sp. JS42 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_985056.1 775436 D 232721 CDS YP_985057.1 121593161 4673959 776682..777245 1 NC_008782.1 PFAM: protein of unknown function DUF1415; KEGG: rme:Rmet_0870 protein of unknown function DUF1415; hypothetical protein 777245 4673959 Ajs_0737 Acidovorax sp. JS42 hypothetical protein YP_985057.1 776682 D 232721 CDS YP_985058.1 121593162 4674000 complement(777352..778173) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 778173 4674000 Ajs_0738 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985058.1 777352 R 232721 CDS YP_985059.1 121593163 4673708 complement(778163..779695) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 779695 4673708 Ajs_0739 Acidovorax sp. JS42 integrase catalytic subunit YP_985059.1 778163 R 232721 CDS YP_985060.1 121593164 4673291 779743..780510 1 NC_008782.1 PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 protein of unknown function DUF1568; hypothetical protein 780510 4673291 Ajs_0740 Acidovorax sp. JS42 hypothetical protein YP_985060.1 779743 D 232721 CDS YP_985061.1 121593165 4673534 780692..785425 1 NC_008782.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin); glutamate synthase (NADH) large subunit 785425 4673534 Ajs_0741 Acidovorax sp. JS42 glutamate synthase (NADH) large subunit YP_985061.1 780692 D 232721 CDS YP_985062.1 121593166 4673386 785489..786967 1 NC_008782.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 786967 gltD 4673386 gltD Acidovorax sp. JS42 glutamate synthase subunit beta YP_985062.1 785489 D 232721 CDS YP_985063.1 121593167 4673339 787198..788085 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_A3014 extracellular solute-binding protein, family 3; extracellular solute-binding protein 788085 4673339 Ajs_0743 Acidovorax sp. JS42 extracellular solute-binding protein YP_985063.1 787198 D 232721 CDS YP_985064.1 121593168 4672907 788263..788916 1 NC_008782.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2796 putative ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit 788916 4672907 Ajs_0744 Acidovorax sp. JS42 polar amino acid ABC transporter inner membrane subunit YP_985064.1 788263 D 232721 CDS YP_985065.1 121593169 4672857 788897..789679 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2971 ABC transporter related; ABC transporter-like protein 789679 4672857 Ajs_0745 Acidovorax sp. JS42 ABC transporter-like protein YP_985065.1 788897 D 232721 CDS YP_985066.1 121593170 4672820 complement(789871..790833) 1 NC_008782.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 790833 4672820 Ajs_0746 Acidovorax sp. JS42 spermidine synthase YP_985066.1 789871 R 232721 CDS YP_985067.1 121593171 4672342 complement(790833..791243) 1 NC_008782.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: net:Neut_2465 S-adenosylmethionine decarboxylase-related protein; S-adenosylmethionine decarboxylase related 791243 4672342 Ajs_0747 Acidovorax sp. JS42 S-adenosylmethionine decarboxylase related YP_985067.1 790833 R 232721 CDS YP_985068.1 121593172 4672219 791607..792467 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related; ABC transporter-like protein 792467 4672219 Ajs_0748 Acidovorax sp. JS42 ABC transporter-like protein YP_985068.1 791607 D 232721 CDS YP_985069.1 121593173 4672195 792464..793246 1 NC_008782.1 PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140; hypothetical protein 793246 4672195 Ajs_0749 Acidovorax sp. JS42 hypothetical protein YP_985069.1 792464 D 232721 CDS YP_985070.1 121593174 4672113 793281..793766 1 NC_008782.1 PFAM: Mammalian cell entry related domain protein; KEGG: rfr:Rfer_2937 mammalian cell entry related; hypothetical protein 793766 4672113 Ajs_0750 Acidovorax sp. JS42 hypothetical protein YP_985070.1 793281 D 232721 CDS YP_985071.1 121593175 4672065 793763..794515 1 NC_008782.1 PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein; VacJ family lipoprotein 794515 4672065 Ajs_0751 Acidovorax sp. JS42 VacJ family lipoprotein YP_985071.1 793763 D 232721 CDS YP_985072.1 121593176 4671747 794694..795341 1 NC_008782.1 PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_3630 toluene tolerance; toluene tolerance family protein 795341 4671747 Ajs_0752 Acidovorax sp. JS42 toluene tolerance family protein YP_985072.1 794694 D 232721 CDS YP_985073.1 121593177 4671493 795372..795641 1 NC_008782.1 KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 795641 4671493 Ajs_0753 Acidovorax sp. JS42 sulfate transporter/antisigma-factor antagonist STAS YP_985073.1 795372 D 232721 CDS YP_985074.1 121593178 4671631 795807..796895 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 796895 4671631 Ajs_0754 Acidovorax sp. JS42 transposase, IS4 family protein YP_985074.1 795807 D 232721 CDS YP_985075.1 121593179 4671036 797064..797981 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2941 ABC transporter related; ABC transporter-like protein 797981 4671036 Ajs_0755 Acidovorax sp. JS42 ABC transporter-like protein YP_985075.1 797064 D 232721 CDS YP_985076.1 121593180 4670925 797978..798733 1 NC_008782.1 PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2; ABC-2 type transporter 798733 4670925 Ajs_0756 Acidovorax sp. JS42 ABC-2 type transporter YP_985076.1 797978 D 232721 CDS YP_985077.1 121593181 4670527 798735..798983 1 NC_008782.1 PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein; BolA family protein 798983 4670527 Ajs_0757 Acidovorax sp. JS42 BolA family protein YP_985077.1 798735 D 232721 CDS YP_985078.1 121593182 4670804 799175..800527 1 NC_008782.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 800527 4670804 Ajs_0758 Acidovorax sp. JS42 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_985078.1 799175 D 232721 CDS YP_985079.1 121593183 4670700 800524..801174 1 NC_008782.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 801174 hisG 4670700 hisG Acidovorax sp. JS42 ATP phosphoribosyltransferase catalytic subunit YP_985079.1 800524 D 232721 CDS YP_985080.1 121593184 4670582 801339..802658 1 NC_008782.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 802658 hisD 4670582 hisD Acidovorax sp. JS42 histidinol dehydrogenase YP_985080.1 801339 D 232721 CDS YP_985081.1 121593185 4674478 802824..803525 1 NC_008782.1 KEGG: sus:Acid_7695 PilT protein domain protein; hypothetical protein 803525 4674478 Ajs_0761 Acidovorax sp. JS42 hypothetical protein YP_985081.1 802824 D 232721 CDS YP_985082.1 121593186 4674500 803564..804670 1 NC_008782.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 804670 4674500 Ajs_0762 Acidovorax sp. JS42 histidinol-phosphate aminotransferase YP_985082.1 803564 D 232721 CDS YP_985083.1 121593187 4674515 804667..805299 1 NC_008782.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 805299 hisB 4674515 hisB Acidovorax sp. JS42 imidazoleglycerol-phosphate dehydratase YP_985083.1 804667 D 232721 CDS YP_985084.1 121593188 4674523 805350..806018 1 NC_008782.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 806018 hisH 4674523 hisH Acidovorax sp. JS42 imidazole glycerol phosphate synthase subunit HisH YP_985084.1 805350 D 232721 CDS YP_985085.1 121593189 4674535 806044..806820 1 NC_008782.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 806820 4674535 Ajs_0765 Acidovorax sp. JS42 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_985085.1 806044 D 232721 CDS YP_985086.1 121593190 4674563 complement(806827..808023) 1 NC_008782.1 KEGG: rso:RS01997 hypothetical signal peptide protein; hypothetical protein 808023 4674563 Ajs_0766 Acidovorax sp. JS42 hypothetical protein YP_985086.1 806827 R 232721 CDS YP_985087.1 121593191 4674580 complement(808091..809464) 1 NC_008782.1 KEGG: rme:Rmet_4161 putative transmembrane protein; hypothetical protein 809464 4674580 Ajs_0767 Acidovorax sp. JS42 hypothetical protein YP_985087.1 808091 R 232721 CDS YP_985088.1 121593192 4674622 complement(809464..810996) 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_4160 glycosyl transferase, group 1; group 1 glycosyl transferase 810996 4674622 Ajs_0768 Acidovorax sp. JS42 group 1 glycosyl transferase YP_985088.1 809464 R 232721 CDS YP_985089.1 121593193 4674653 complement(810993..811994) 1 NC_008782.1 KEGG: rso:RSc2272 probable transmembrane protein; hypothetical protein 811994 4674653 Ajs_0769 Acidovorax sp. JS42 hypothetical protein YP_985089.1 810993 R 232721 CDS YP_985090.1 121593194 4674662 complement(811987..813381) 1 NC_008782.1 KEGG: bxe:Bxe_A2972 putative transmembrane protein; hypothetical protein 813381 4674662 Ajs_0770 Acidovorax sp. JS42 hypothetical protein YP_985090.1 811987 R 232721 CDS YP_985091.1 121593195 4674679 complement(813389..813943) 1 NC_008782.1 KEGG: rso:RSc2274 putative lipoprotein; putative lipoprotein 813943 4674679 Ajs_0771 Acidovorax sp. JS42 putative lipoprotein YP_985091.1 813389 R 232721 CDS YP_985092.1 121593196 4674719 complement(813965..817855) 1 NC_008782.1 PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein; hypothetical protein 817855 4674719 Ajs_0772 Acidovorax sp. JS42 hypothetical protein YP_985092.1 813965 R 232721 CDS YP_985093.1 121593197 4674133 complement(817815..820646) 1 NC_008782.1 PFAM: polysaccharide deacetylase; KEGG: rso:RSc2276 putative signal peptide protein; polysaccharide deacetylase 820646 4674133 Ajs_0773 Acidovorax sp. JS42 polysaccharide deacetylase YP_985093.1 817815 R 232721 CDS YP_985094.1 121593198 4674063 820825..821835 1 NC_008782.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mfa:Mfla_2007 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 821835 4674063 Ajs_0774 Acidovorax sp. JS42 UDP-galactose 4-epimerase YP_985094.1 820825 D 232721 CDS YP_985095.1 121593199 4674099 821876..822655 1 NC_008782.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 822655 4674099 Ajs_0775 Acidovorax sp. JS42 imidazole glycerol phosphate synthase subunit HisF YP_985095.1 821876 D 232721 CDS YP_985096.1 121593200 4674146 822760..823158 1 NC_008782.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 823158 hisI 4674146 hisI Acidovorax sp. JS42 phosphoribosyl-AMP cyclohydrolase YP_985096.1 822760 D 232721 CDS YP_985097.1 121593201 4673887 823165..823563 1 NC_008782.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 823563 hisE 4673887 hisE Acidovorax sp. JS42 phosphoribosyl-ATP pyrophosphatase YP_985097.1 823165 D 232721 CDS YP_985098.1 121593202 4673827 823563..823949 1 NC_008782.1 KEGG: rfr:Rfer_2954 putative transmembrane protein; hypothetical protein 823949 4673827 Ajs_0778 Acidovorax sp. JS42 hypothetical protein YP_985098.1 823563 D 232721 CDS YP_985099.1 121593203 4673782 823942..824982 1 NC_008782.1 PFAM: Patatin; KEGG: pol:Bpro_3621 patatin; patatin 824982 4673782 Ajs_0779 Acidovorax sp. JS42 patatin YP_985099.1 823942 D 232721 CDS YP_985100.1 121593204 4673748 825022..825381 1 NC_008782.1 PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein; histidine triad (HIT) protein 825381 4673748 Ajs_0780 Acidovorax sp. JS42 histidine triad (HIT) protein YP_985100.1 825022 D 232721 CDS YP_985101.1 121593205 4673270 825484..825732 1 NC_008782.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 825732 tatA 4673270 tatA Acidovorax sp. JS42 twin arginine translocase protein A YP_985101.1 825484 D 232721 CDS YP_985102.1 121593206 4673407 825765..826244 1 NC_008782.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB; sec-independent translocase 826244 tatB 4673407 tatB Acidovorax sp. JS42 sec-independent translocase YP_985102.1 825765 D 232721 CDS YP_985103.1 121593207 4673148 826307..827095 1 NC_008782.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC; Sec-independent protein translocase TatC 827095 4673148 Ajs_0783 Acidovorax sp. JS42 Sec-independent protein translocase TatC YP_985103.1 826307 D 232721 CDS YP_985104.1 121593208 4673320 complement(827231..828370) 1 NC_008782.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 828370 4673320 Ajs_0784 Acidovorax sp. JS42 peptidase S1 and S6, chymotrypsin/Hap YP_985104.1 827231 R 232721 CDS YP_985105.1 121593209 4673088 complement(828506..829849) 1 NC_008782.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein 829849 4673088 Ajs_0785 Acidovorax sp. JS42 ferric reductase domain-containing protein YP_985105.1 828506 R 232721 CDS YP_985106.1 121593210 4673041 829990..830754 1 NC_008782.1 PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34; hypothetical protein 830754 4673041 Ajs_0786 Acidovorax sp. JS42 hypothetical protein YP_985106.1 829990 D 232721 CDS YP_985107.1 121593211 4673003 830832..831887 1 NC_008782.1 KEGG: rfr:Rfer_2962 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 831887 4673003 Ajs_0787 Acidovorax sp. JS42 4-hydroxythreonine-4-phosphate dehydrogenase YP_985107.1 830832 D 232721 CDS YP_985108.1 121593212 4672874 complement(831963..832391) 1 NC_008782.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 832391 mscL 4672874 mscL Acidovorax sp. JS42 large-conductance mechanosensitive channel YP_985108.1 831963 R 232721 CDS YP_985109.1 121593213 4672457 832526..833125 1 NC_008782.1 KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 833125 4672457 Ajs_0789 Acidovorax sp. JS42 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_985109.1 832526 D 232721 CDS YP_985110.1 121593214 4672435 833141..834562 1 NC_008782.1 PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 834562 4672435 Ajs_0790 Acidovorax sp. JS42 cytochrome b/b6 domain-containing protein YP_985110.1 833141 D 232721 CDS YP_985111.1 121593215 4672350 834579..835334 1 NC_008782.1 PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1; cytochrome c1 835334 4672350 Ajs_0791 Acidovorax sp. JS42 cytochrome c1 YP_985111.1 834579 D 232721 CDS YP_985112.1 121593216 4672230 835430..836041 1 NC_008782.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_2967 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 836041 4672230 Ajs_0792 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_985112.1 835430 D 232721 CDS YP_985113.1 121593217 4671485 836065..836601 1 NC_008782.1 PFAM: Stringent starvation protein B; KEGG: rfr:Rfer_2968 stringent starvation protein B; stringent starvation protein B 836601 4671485 Ajs_0793 Acidovorax sp. JS42 stringent starvation protein B YP_985113.1 836065 D 232721 CDS YP_985114.1 121593218 4671809 complement(836844..837143) 1 NC_008782.1 KEGG: rfr:Rfer_2913 hypothetical protein; hypothetical protein 837143 4671809 Ajs_0794 Acidovorax sp. JS42 hypothetical protein YP_985114.1 836844 R 232721 CDS YP_985115.1 121593219 4671305 837194..838144 1 NC_008782.1 PFAM: peptidase M23B; KEGG: rfr:Rfer_2912 peptidase M23B; peptidase M23B 838144 4671305 Ajs_0795 Acidovorax sp. JS42 peptidase M23B YP_985115.1 837194 D 232721 CDS YP_985116.1 121593220 4671153 838280..841033 1 NC_008782.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 841033 4671153 Ajs_0796 Acidovorax sp. JS42 preprotein translocase subunit SecA YP_985116.1 838280 D 232721 CDS YP_985117.1 121593221 4671118 841134..842363 1 NC_008782.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 842363 argJ 4671118 argJ Acidovorax sp. JS42 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein YP_985117.1 841134 D 232721 CDS YP_985118.1 121593222 4671104 842418..843296 1 NC_008782.1 PFAM: protein of unknown function DUF815; KEGG: rfr:Rfer_2909 protein of unknown function DUF815; hypothetical protein 843296 4671104 Ajs_0798 Acidovorax sp. JS42 hypothetical protein YP_985118.1 842418 D 232721 CDS YP_985119.1 121593223 4671069 843293..843739 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_2908 NUDIX hydrolase; NUDIX hydrolase 843739 4671069 Ajs_0799 Acidovorax sp. JS42 NUDIX hydrolase YP_985119.1 843293 D 232721 CDS YP_985120.1 121593224 4671052 complement(843808..844038) 1 NC_008782.1 PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329; hypothetical protein 844038 4671052 Ajs_0800 Acidovorax sp. JS42 hypothetical protein YP_985120.1 843808 R 232721 CDS YP_985121.1 121593225 4671000 complement(844045..844800) 1 NC_008782.1 PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342; hypothetical protein 844800 4671000 Ajs_0801 Acidovorax sp. JS42 hypothetical protein YP_985121.1 844045 R 232721 CDS YP_985122.1 121593226 4670783 complement(844891..845514) 1 NC_008782.1 KEGG: rfr:Rfer_2905 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 845514 4670783 Ajs_0802 Acidovorax sp. JS42 dephospho-CoA kinase YP_985122.1 844891 R 232721 CDS YP_985123.1 121593227 4670649 complement(845516..846397) 1 NC_008782.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rfr:Rfer_2904 prepilin peptidase; type 4 prepilin peptidase 1 846397 4670649 Ajs_0803 Acidovorax sp. JS42 type 4 prepilin peptidase 1 YP_985123.1 845516 R 232721 CDS YP_985124.1 121593228 4670601 complement(846397..847614) 1 NC_008782.1 PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein; type II secretion system protein 847614 4670601 Ajs_0804 Acidovorax sp. JS42 type II secretion system protein YP_985124.1 846397 R 232721 CDS YP_985125.1 121593229 4671287 complement(847635..849368) 1 NC_008782.1 KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB 849368 4671287 Ajs_0805 Acidovorax sp. JS42 type IV-A pilus assembly ATPase PilB YP_985125.1 847635 R 232721 CDS YP_985126.1 121593230 4670585 complement(849677..850765) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 850765 4670585 Ajs_0806 Acidovorax sp. JS42 transposase, IS4 family protein YP_985126.1 849677 R 232721 CDS YP_985127.1 121593231 4670811 851174..852145 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: psp:PSPPH_0099 shufflon-specific recombinase; phage integrase family protein 852145 4670811 Ajs_0807 Acidovorax sp. JS42 phage integrase family protein YP_985127.1 851174 D 232721 CDS YP_985128.1 121593232 4671007 complement(852387..854816) 1 NC_008782.1 KEGG: hhe:HH1029 hypothetical protein; hypothetical protein 854816 4671007 Ajs_0808 Acidovorax sp. JS42 hypothetical protein YP_985128.1 852387 R 232721 CDS YP_985129.1 121593233 4671067 complement(854813..856525) 1 NC_008782.1 PFAM: protein of unknown function DUF262; KEGG: hhe:HH1030 hypothetical protein; hypothetical protein 856525 4671067 Ajs_0809 Acidovorax sp. JS42 hypothetical protein YP_985129.1 854813 R 232721 CDS YP_985130.1 121593234 4671092 complement(856530..857519) 1 NC_008782.1 KEGG: vvu:VV20627 hypothetical protein; hypothetical protein 857519 4671092 Ajs_0810 Acidovorax sp. JS42 hypothetical protein YP_985130.1 856530 R 232721 CDS YP_985131.1 121593235 4671166 complement(858831..859154) 1 NC_008782.1 hypothetical protein 859154 4671166 Ajs_0812 Acidovorax sp. JS42 hypothetical protein YP_985131.1 858831 R 232721 CDS YP_985132.1 121593236 4671198 complement(859200..859586) 1 NC_008782.1 KEGG: rfr:Rfer_3053 hypothetical protein; hypothetical protein 859586 4671198 Ajs_0813 Acidovorax sp. JS42 hypothetical protein YP_985132.1 859200 R 232721 CDS YP_985133.1 121593237 4671459 complement(859583..860401) 1 NC_008782.1 KEGG: sdn:Sden_1113 hypothetical protein; hypothetical protein 860401 4671459 Ajs_0814 Acidovorax sp. JS42 hypothetical protein YP_985133.1 859583 R 232721 CDS YP_985134.1 121593238 4671893 complement(860555..860752) 1 NC_008782.1 hypothetical protein 860752 4671893 Ajs_0815 Acidovorax sp. JS42 hypothetical protein YP_985134.1 860555 R 232721 CDS YP_985135.1 121593239 4671446 860849..861205 1 NC_008782.1 hypothetical protein 861205 4671446 Ajs_0816 Acidovorax sp. JS42 hypothetical protein YP_985135.1 860849 D 232721 CDS YP_985136.1 121593240 4671299 complement(861284..862336) 1 NC_008782.1 PFAM: Silent information regulator protein Sir2; KEGG: bpm:BURPS1710b_3116 transcriptional regulator, Sir2 family; silent information regulator protein Sir2 862336 4671299 Ajs_0817 Acidovorax sp. JS42 silent information regulator protein Sir2 YP_985136.1 861284 R 232721 CDS YP_985137.1 121593241 4671208 complement(862937..863497) 1 NC_008782.1 hypothetical protein 863497 4671208 Ajs_0819 Acidovorax sp. JS42 hypothetical protein YP_985137.1 862937 R 232721 CDS YP_985138.1 121593242 4671194 863497..863796 1 NC_008782.1 hypothetical protein 863796 4671194 Ajs_0820 Acidovorax sp. JS42 hypothetical protein YP_985138.1 863497 D 232721 CDS YP_985139.1 121593243 4671757 complement(863779..864744) 1 NC_008782.1 hypothetical protein 864744 4671757 Ajs_0821 Acidovorax sp. JS42 hypothetical protein YP_985139.1 863779 R 232721 CDS YP_985140.1 121593244 4671504 864799..865080 1 NC_008782.1 hypothetical protein 865080 4671504 Ajs_0822 Acidovorax sp. JS42 hypothetical protein YP_985140.1 864799 D 232721 CDS YP_985141.1 121593245 4674210 865077..865787 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase; metallophosphoesterase 865787 4674210 Ajs_0823 Acidovorax sp. JS42 metallophosphoesterase YP_985141.1 865077 D 232721 CDS YP_985142.1 121593246 4671943 865756..866028 1 NC_008782.1 hypothetical protein 866028 4671943 Ajs_0824 Acidovorax sp. JS42 hypothetical protein YP_985142.1 865756 D 232721 CDS YP_985143.1 121593247 4671867 complement(866414..867232) 1 NC_008782.1 KEGG: nar:Saro_0358 putative restriction endonuclease; hypothetical protein 867232 4671867 Ajs_0825 Acidovorax sp. JS42 hypothetical protein YP_985143.1 866414 R 232721 CDS YP_985144.1 121593248 4672114 complement(867344..868051) 1 NC_008782.1 KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III; DNA ligase III-like protein 868051 4672114 Ajs_0826 Acidovorax sp. JS42 DNA ligase III-like protein YP_985144.1 867344 R 232721 CDS YP_985145.1 121593249 4672357 complement(868057..868584) 1 NC_008782.1 KEGG: rpb:RPB_2980 hypothetical protein; hypothetical protein 868584 4672357 Ajs_0827 Acidovorax sp. JS42 hypothetical protein YP_985145.1 868057 R 232721 CDS YP_985146.1 121593250 4672405 complement(868581..869978) 1 NC_008782.1 KEGG: rpb:RPB_2979 hypothetical protein; hypothetical protein 869978 4672405 Ajs_0828 Acidovorax sp. JS42 hypothetical protein YP_985146.1 868581 R 232721 CDS YP_985147.1 121593251 4672436 complement(870052..871635) 1 NC_008782.1 KEGG: gox:GOX1506 putative chromosome segregation SMC protein; chromosome segregation ATPase-like protein 871635 4672436 Ajs_0829 Acidovorax sp. JS42 chromosome segregation ATPase-like protein YP_985147.1 870052 R 232721 CDS YP_985148.1 121593252 4672046 complement(871648..872469) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 872469 4672046 Ajs_0830 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985148.1 871648 R 232721 CDS YP_985149.1 121593253 4672587 complement(872459..873991) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 873991 4672587 Ajs_0831 Acidovorax sp. JS42 integrase catalytic subunit YP_985149.1 872459 R 232721 CDS YP_985150.1 121593254 4672588 complement(874052..874993) 1 NC_008782.1 SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family; DEAD-like helicases-like 874993 4672588 Ajs_0832 Acidovorax sp. JS42 DEAD-like helicases-like YP_985150.1 874052 R 232721 CDS YP_985151.1 121593255 4672497 complement(875015..880312) 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; DEAD/DEAH box helicase domain-containing protein 880312 4672497 Ajs_0833 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_985151.1 875015 R 232721 CDS YP_985152.1 121593256 4672523 complement(880327..881367) 1 NC_008782.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: bbr:BB0907 hypothetical protein; filamentation induced by cAMP protein Fic 881367 4672523 Ajs_0834 Acidovorax sp. JS42 filamentation induced by cAMP protein Fic YP_985152.1 880327 R 232721 CDS YP_985153.1 121593257 4672994 complement(881907..882671) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 882671 4672994 Ajs_0835 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985153.1 881907 R 232721 CDS YP_985154.1 121593258 4672737 complement(882668..884263) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 884263 4672737 Ajs_0836 Acidovorax sp. JS42 integrase catalytic subunit YP_985154.1 882668 R 232721 CDS YP_985155.1 121593259 4673067 884366..884896 1 NC_008782.1 hypothetical protein 884896 4673067 Ajs_0837 Acidovorax sp. JS42 hypothetical protein YP_985155.1 884366 D 232721 CDS YP_985156.1 121593260 4673188 complement(885127..886035) 1 NC_008782.1 PFAM: plasmid encoded RepA protein; KEGG: xac:XAC2441 replication protein; plasmid encoded RepA protein 886035 4673188 Ajs_0838 Acidovorax sp. JS42 plasmid encoded RepA protein YP_985156.1 885127 R 232721 CDS YP_985157.1 121593261 4673998 complement(886444..886782) 1 NC_008782.1 hypothetical protein 886782 4673998 Ajs_0839 Acidovorax sp. JS42 hypothetical protein YP_985157.1 886444 R 232721 CDS YP_985158.1 121593262 4673606 complement(887111..888094) 1 NC_008782.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase; dimethylallyltranstransferase 888094 4673606 Ajs_0840 Acidovorax sp. JS42 dimethylallyltranstransferase YP_985158.1 887111 R 232721 CDS YP_985159.1 121593263 4673783 888268..888579 1 NC_008782.1 PFAM: ribosomal protein L21; KEGG: rfr:Rfer_1268 ribosomal protein L21; 50S ribosomal protein L21 888579 rplU 4673783 rplU Acidovorax sp. JS42 50S ribosomal protein L21 YP_985159.1 888268 D 232721 CDS YP_985160.1 121593264 4673318 888595..888852 1 NC_008782.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 888852 rpmA 4673318 rpmA Acidovorax sp. JS42 50S ribosomal protein L27 YP_985160.1 888595 D 232721 CDS YP_985161.1 121593265 4673943 888934..890073 1 NC_008782.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 890073 obgE 4673943 obgE Acidovorax sp. JS42 GTPase ObgE YP_985161.1 888934 D 232721 CDS YP_985162.1 121593266 4673260 890147..891289 1 NC_008782.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 891289 4673260 Ajs_0844 Acidovorax sp. JS42 gamma-glutamyl kinase YP_985162.1 890147 D 232721 CDS YP_985163.1 121593267 4673881 complement(891336..892025) 1 NC_008782.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 892025 4673881 Ajs_0845 Acidovorax sp. JS42 dinucleoside polyphosphate hydrolase YP_985163.1 891336 R 232721 CDS YP_985164.1 121593268 4673850 892116..893861 1 NC_008782.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 893861 4673850 Ajs_0846 Acidovorax sp. JS42 prolyl-tRNA synthetase YP_985164.1 892116 D 232721 CDS YP_985165.1 121593269 4673900 893882..894538 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 894538 4673900 Ajs_0847 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985165.1 893882 D 232721 CDS YP_985166.1 121593270 4674147 complement(894625..895941) 1 NC_008782.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sdy:SDY_4455 putative transport protein; hypothetical protein 895941 4674147 Ajs_0848 Acidovorax sp. JS42 hypothetical protein YP_985166.1 894625 R 232721 CDS YP_985167.1 121593271 4674554 complement(896120..896449) 1 NC_008782.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rfr:Rfer_1276 glutaredoxin-related protein; glutaredoxin-like protein 896449 4674554 Ajs_0849 Acidovorax sp. JS42 glutaredoxin-like protein YP_985167.1 896120 R 232721 CDS YP_985168.1 121593272 4674513 complement(896504..897346) 1 NC_008782.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1279 modification methylase, HemK family; HemK family modification methylase 897346 4674513 Ajs_0850 Acidovorax sp. JS42 HemK family modification methylase YP_985168.1 896504 R 232721 CDS YP_985169.1 121593273 4674475 complement(897404..898507) 1 NC_008782.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 898507 prfA 4674475 prfA Acidovorax sp. JS42 peptide chain release factor 1 YP_985169.1 897404 R 232721 CDS YP_985170.1 121593274 4674150 complement(898621..899931) 1 NC_008782.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 899931 hemA 4674150 hemA Acidovorax sp. JS42 glutamyl-tRNA reductase YP_985170.1 898621 R 232721 CDS YP_985171.1 121593275 4674320 900006..900284 1 NC_008782.1 KEGG: rfr:Rfer_1282 hypothetical protein; hypothetical protein 900284 4674320 Ajs_0853 Acidovorax sp. JS42 hypothetical protein YP_985171.1 900006 D 232721 CDS YP_985172.1 121593276 4673640 complement(900286..901188) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A3360 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 901188 4673640 Ajs_0854 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985172.1 900286 R 232721 CDS YP_985173.1 121593277 4673632 901231..902292 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A3359 hypothetical protein; hypothetical protein 902292 4673632 Ajs_0855 Acidovorax sp. JS42 hypothetical protein YP_985173.1 901231 D 232721 CDS YP_985174.1 121593278 4673542 902303..903196 1 NC_008782.1 PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_3507 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 903196 4673542 Ajs_0856 Acidovorax sp. JS42 N-formylglutamate amidohydrolase YP_985174.1 902303 D 232721 CDS YP_985175.1 121593279 4673513 complement(903269..905791) 1 NC_008782.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein; mechanosensitive ion channel protein MscS 905791 4673513 Ajs_0857 Acidovorax sp. JS42 mechanosensitive ion channel protein MscS YP_985175.1 903269 R 232721 CDS YP_985176.1 121593280 4673511 complement(905890..906639) 1 NC_008782.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_0853 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase 906639 4673511 Ajs_0858 Acidovorax sp. JS42 glycerophosphodiester phosphodiesterase YP_985176.1 905890 R 232721 CDS YP_985177.1 121593281 4673265 complement(906665..907672) 1 NC_008782.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1284 ABC transporter related; ABC transporter-like protein 907672 4673265 Ajs_0859 Acidovorax sp. JS42 ABC transporter-like protein YP_985177.1 906665 R 232721 CDS YP_985178.1 121593282 4673173 complement(907736..908584) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0855 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 908584 4673173 Ajs_0860 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985178.1 907736 R 232721 CDS YP_985179.1 121593283 4673349 complement(908587..909468) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0856 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 909468 4673349 Ajs_0861 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985179.1 908587 R 232721 CDS YP_985180.1 121593284 4672719 complement(909599..910912) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0857 extracellular solute-binding protein, family 1; extracellular solute-binding protein 910912 4672719 Ajs_0862 Acidovorax sp. JS42 extracellular solute-binding protein YP_985180.1 909599 R 232721 CDS YP_985181.1 121593285 4672682 911149..912453 1 NC_008782.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pae:PA0316 D-3-phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase 912453 4672682 Ajs_0863 Acidovorax sp. JS42 D-3-phosphoglycerate dehydrogenase YP_985181.1 911149 D 232721 CDS YP_985182.1 121593286 4672483 912646..916569 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 916569 4672483 Ajs_0864 Acidovorax sp. JS42 FAD linked oxidase domain-containing protein YP_985182.1 912646 D 232721 CDS YP_985183.1 121593287 4672792 916566..917057 1 NC_008782.1 PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein; histidine triad (HIT) protein 917057 4672792 Ajs_0865 Acidovorax sp. JS42 histidine triad (HIT) protein YP_985183.1 916566 D 232721 CDS YP_985184.1 121593288 4672766 917221..917637 1 NC_008782.1 PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 protein of unknown function DUF971; hypothetical protein 917637 4672766 Ajs_0866 Acidovorax sp. JS42 hypothetical protein YP_985184.1 917221 D 232721 CDS YP_985185.1 121593289 4672366 917762..918493 1 NC_008782.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1291 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 918493 4672366 Ajs_0867 Acidovorax sp. JS42 ubiquinone/menaquinone biosynthesis methyltransferase YP_985185.1 917762 D 232721 CDS YP_985186.1 121593290 4672017 918532..919539 1 NC_008782.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 919539 4672017 Ajs_0868 Acidovorax sp. JS42 import inner membrane translocase subunit Tim44 YP_985186.1 918532 D 232721 CDS YP_985187.1 121593291 4672010 919620..920198 1 NC_008782.1 KEGG: rfr:Rfer_1293 hypothetical protein; hypothetical protein 920198 4672010 Ajs_0869 Acidovorax sp. JS42 hypothetical protein YP_985187.1 919620 D 232721 CDS YP_985188.1 121593292 4672233 920195..921760 1 NC_008782.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 921760 ubiB 4672233 ubiB Acidovorax sp. JS42 putative ubiquinone biosynthesis protein UbiB YP_985188.1 920195 D 232721 CDS YP_985189.1 121593293 4672164 921799..923247 1 NC_008782.1 PFAM: Na+/solute symporter; KEGG: rso:RSc0463 probable sodium/solute symporter transmembrane protein; Na+/solute symporter 923247 4672164 Ajs_0871 Acidovorax sp. JS42 Na+/solute symporter YP_985189.1 921799 D 232721 CDS YP_985190.1 121593294 4671404 923278..923595 1 NC_008782.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: rso:RSc0464 hypothetical protein; FmdB family regulatory protein 923595 4671404 Ajs_0872 Acidovorax sp. JS42 FmdB family regulatory protein YP_985190.1 923278 D 232721 CDS YP_985191.1 121593295 4671655 923611..924234 1 NC_008782.1 PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502; hypothetical protein 924234 4671655 Ajs_0873 Acidovorax sp. JS42 hypothetical protein YP_985191.1 923611 D 232721 CDS YP_985192.1 121593296 4671310 924327..926138 1 NC_008782.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 926138 aspS 4671310 aspS Acidovorax sp. JS42 aspartyl-tRNA synthetase YP_985192.1 924327 D 232721 CDS YP_985193.1 121593297 4671551 926235..927038 1 NC_008782.1 KEGG: xcb:XC_0710 hypothetical protein; hypothetical protein 927038 4671551 Ajs_0875 Acidovorax sp. JS42 hypothetical protein YP_985193.1 926235 D 232721 CDS YP_985194.1 121593298 4671528 927049..927519 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1298 NUDIX hydrolase; NUDIX hydrolase 927519 4671528 Ajs_0876 Acidovorax sp. JS42 NUDIX hydrolase YP_985194.1 927049 D 232721 CDS YP_985195.1 121593299 4671035 927516..928283 1 NC_008782.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_1299 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 928283 4671035 Ajs_0877 Acidovorax sp. JS42 endonuclease/exonuclease/phosphatase YP_985195.1 927516 D 232721 CDS YP_985196.1 121593300 4670552 928288..929517 1 NC_008782.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: rfr:Rfer_1300 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 929517 4670552 Ajs_0878 Acidovorax sp. JS42 phospholipase D/transphosphatidylase YP_985196.1 928288 D 232721 CDS YP_985197.1 121593301 4670538 929645..930370 1 NC_008782.1 PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I; GTP cyclohydrolase 930370 4670538 Ajs_0879 Acidovorax sp. JS42 GTP cyclohydrolase YP_985197.1 929645 D 232721 CDS YP_985198.1 121593302 4670832 930374..930796 1 NC_008782.1 PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD; BLUF domain-containing protein 930796 4670832 Ajs_0880 Acidovorax sp. JS42 BLUF domain-containing protein YP_985198.1 930374 D 232721 CDS YP_985199.1 121593303 4670828 931017..931928 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bbr:BB3444 hypothetical protein; hypothetical protein 931928 4670828 Ajs_0881 Acidovorax sp. JS42 hypothetical protein YP_985199.1 931017 D 232721 CDS YP_985200.1 121593304 4670794 931990..932808 1 NC_008782.1 KEGG: rfr:Rfer_1303 hypothetical protein; hypothetical protein 932808 4670794 Ajs_0882 Acidovorax sp. JS42 hypothetical protein YP_985200.1 931990 D 232721 CDS YP_985201.1 121593305 4670709 complement(932798..933484) 1 NC_008782.1 KEGG: mfa:Mfla_1735 hypothetical protein; hypothetical protein 933484 4670709 Ajs_0883 Acidovorax sp. JS42 hypothetical protein YP_985201.1 932798 R 232721 CDS YP_985202.1 121593306 4674725 complement(933560..934171) 1 NC_008782.1 KEGG: rfr:Rfer_3472 hypothetical protein; hypothetical protein 934171 4674725 Ajs_0884 Acidovorax sp. JS42 hypothetical protein YP_985202.1 933560 R 232721 CDS YP_985203.1 121593307 4671268 934301..934957 1 NC_008782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB4942 hypothetical protein; lysine exporter protein LysE/YggA 934957 4671268 Ajs_0885 Acidovorax sp. JS42 lysine exporter protein LysE/YggA YP_985203.1 934301 D 232721 CDS YP_985204.1 121593308 4671311 complement(935024..936427) 1 NC_008782.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 936427 4671311 Ajs_0886 Acidovorax sp. JS42 amidase YP_985204.1 935024 R 232721 CDS YP_985205.1 121593309 4670652 complement(936531..938021) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bja:blr3234 ABC transporter substrate-binding protein; extracellular solute-binding protein 938021 4670652 Ajs_0887 Acidovorax sp. JS42 extracellular solute-binding protein YP_985205.1 936531 R 232721 CDS YP_985206.1 121593310 4670659 complement(938120..938977) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3233 ABC transporter ATP-binding protein; ABC transporter-like protein 938977 4670659 Ajs_0888 Acidovorax sp. JS42 ABC transporter-like protein YP_985206.1 938120 R 232721 CDS YP_985207.1 121593311 4670745 complement(938974..939978) 1 NC_008782.1 KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 939978 4670745 Ajs_0889 Acidovorax sp. JS42 oligopeptide/dipeptide ABC transporter ATPase YP_985207.1 938974 R 232721 CDS YP_985208.1 121593312 4670803 complement(939975..940850) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 940850 4670803 Ajs_0890 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985208.1 939975 R 232721 CDS YP_985209.1 121593313 4670909 complement(940847..941857) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3230 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component 941857 4670909 Ajs_0891 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985209.1 940847 R 232721 CDS YP_985210.1 121593314 4670917 941985..942242 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 942242 4670917 Ajs_0892 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_985210.1 941985 D 232721 CDS YP_985211.1 121593315 4670972 complement(942306..942941) 1 NC_008782.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 942941 4670972 Ajs_0893 Acidovorax sp. JS42 peptidyl-tRNA hydrolase YP_985211.1 942306 R 232721 CDS YP_985212.1 121593316 4671002 complement(943076..943702) 1 NC_008782.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 943702 4671002 Ajs_0894 Acidovorax sp. JS42 50S ribosomal protein L25/general stress protein Ctc YP_985212.1 943076 R 232721 CDS YP_985213.1 121593317 4671062 complement(943856..944821) 1 NC_008782.1 KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; Fis family transcriptional regulator 944821 4671062 Ajs_0895 Acidovorax sp. JS42 Fis family transcriptional regulator YP_985213.1 943856 R 232721 CDS YP_985214.1 121593318 4671085 complement(944987..945838) 1 NC_008782.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 945838 ipk 4671085 ipk Acidovorax sp. JS42 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_985214.1 944987 R 232721 CDS YP_985215.1 121593319 4671106 complement(945848..946363) 1 NC_008782.1 KEGG: pol:Bpro_1295 putative lipoprotein; putative lipoprotein 946363 4671106 Ajs_0897 Acidovorax sp. JS42 putative lipoprotein YP_985215.1 945848 R 232721 CDS YP_985216.1 121593320 4671124 complement(946360..948159) 1 NC_008782.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4; hypothetical protein 948159 4671124 Ajs_0898 Acidovorax sp. JS42 hypothetical protein YP_985216.1 946360 R 232721 CDS YP_985217.1 121593321 4671133 948189..949004 1 NC_008782.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 949004 4671133 Ajs_0899 Acidovorax sp. JS42 formamidopyrimidine-DNA glycosylase YP_985217.1 948189 D 232721 CDS YP_985218.1 121593322 4671138 949098..951080 1 NC_008782.1 KEGG: pol:Bpro_1298 hypothetical protein; hypothetical protein 951080 4671138 Ajs_0900 Acidovorax sp. JS42 hypothetical protein YP_985218.1 949098 D 232721 CDS YP_985219.1 121593323 4670570 951077..952150 1 NC_008782.1 KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific DNA-adenine glycosylase 952150 4670570 Ajs_0901 Acidovorax sp. JS42 A/G-specific DNA-adenine glycosylase YP_985219.1 951077 D 232721 CDS YP_985220.1 121593324 4671167 complement(952261..953124) 1 NC_008782.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: rfr:Rfer_1653 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 953124 4671167 Ajs_0902 Acidovorax sp. JS42 hypothetical protein YP_985220.1 952261 R 232721 CDS YP_985221.1 121593325 4671179 complement(953128..954792) 1 NC_008782.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rfr:Rfer_1652 DNA repair protein RecN; DNA repair protein RecN 954792 4671179 Ajs_0903 Acidovorax sp. JS42 DNA repair protein RecN YP_985221.1 953128 R 232721 CDS YP_985222.1 121593326 4671215 complement(954795..955691) 1 NC_008782.1 catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein 955691 ppnK 4671215 ppnK Acidovorax sp. JS42 NAD(+)/NADH kinase family protein YP_985222.1 954795 R 232721 CDS YP_985223.1 121593327 4671192 955720..956724 1 NC_008782.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 956724 hrcA 4671192 hrcA Acidovorax sp. JS42 heat-inducible transcription repressor YP_985223.1 955720 D 232721 CDS YP_985224.1 121593328 4671246 957985..958308 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911; transposase IS3/IS911 family protein 958308 4671246 Ajs_0906 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_985224.1 957985 D 232721 CDS YP_985225.1 121593329 4671938 958305..959219 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: neu:NE1271 integrase, catalytic core; integrase catalytic subunit 959219 4671938 Ajs_0907 Acidovorax sp. JS42 integrase catalytic subunit YP_985225.1 958305 D 232721 CDS YP_985226.1 121593330 4671892 959306..960250 1 NC_008782.1 KEGG: eba:ebA89 hypothetical protein; hypothetical protein 960250 4671892 Ajs_0908 Acidovorax sp. JS42 hypothetical protein YP_985226.1 959306 D 232721 CDS YP_985227.1 121593331 4671348 complement(960160..961239) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 961239 4671348 Ajs_0909 Acidovorax sp. JS42 integrase catalytic subunit YP_985227.1 960160 R 232721 CDS YP_985228.1 121593332 4671291 961319..961702 1 NC_008782.1 KEGG: eba:ebA89 hypothetical protein; hypothetical protein 961702 4671291 Ajs_0910 Acidovorax sp. JS42 hypothetical protein YP_985228.1 961319 D 232721 CDS YP_985229.1 121593333 4671281 complement(961715..962617) 1 NC_008782.1 KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein 962617 4671281 Ajs_0911 Acidovorax sp. JS42 hypothetical protein YP_985229.1 961715 R 232721 CDS YP_985230.1 121593334 4671232 complement(962614..963237) 1 NC_008782.1 KEGG: xom:XOO_2998 hypothetical protein; hypothetical protein 963237 4671232 Ajs_0912 Acidovorax sp. JS42 hypothetical protein YP_985230.1 962614 R 232721 CDS YP_985231.1 121593335 4671184 963938..965164 1 NC_008782.1 PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 965164 4671184 Ajs_0914 Acidovorax sp. JS42 transposase, mutator type YP_985231.1 963938 D 232721 CDS YP_985232.1 121593336 4671678 966008..966529 1 NC_008782.1 KEGG: sma:SAV307 hypothetical protein; hypothetical protein 966529 4671678 Ajs_0916 Acidovorax sp. JS42 hypothetical protein YP_985232.1 966008 D 232721 CDS YP_985233.1 121593337 4671732 966891..967499 1 NC_008782.1 KEGG: bpm:BURPS1710b_A1367 hypothetical protein; hypothetical protein 967499 4671732 Ajs_0917 Acidovorax sp. JS42 hypothetical protein YP_985233.1 966891 D 232721 CDS YP_985234.1 121593338 4671784 967509..968093 1 NC_008782.1 PFAM: isochorismatase hydrolase; KEGG: sus:Acid_6920 isochorismatase hydrolase; isochorismatase hydrolase 968093 4671784 Ajs_0918 Acidovorax sp. JS42 isochorismatase hydrolase YP_985234.1 967509 D 232721 CDS YP_985235.1 121593339 4671801 968112..968579 1 NC_008782.1 KEGG: reu:Reut_A3332 hypothetical protein; hypothetical protein 968579 4671801 Ajs_0919 Acidovorax sp. JS42 hypothetical protein YP_985235.1 968112 D 232721 CDS YP_985236.1 121593340 4671810 968674..969006 1 NC_008782.1 KEGG: pol:Bpro_1343 hypothetical protein; hypothetical protein 969006 4671810 Ajs_0920 Acidovorax sp. JS42 hypothetical protein YP_985236.1 968674 D 232721 CDS YP_985237.1 121593341 4671816 complement(969087..970331) 1 NC_008782.1 KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 970331 4671816 Ajs_0921 Acidovorax sp. JS42 putative oxygen-independent coproporphyrinogen III oxidase YP_985237.1 969087 R 232721 CDS YP_985238.1 121593342 4671820 complement(970424..971041) 1 NC_008782.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 971041 4671820 Ajs_0922 Acidovorax sp. JS42 putative deoxyribonucleotide triphosphate pyrophosphatase YP_985238.1 970424 R 232721 CDS YP_985239.1 121593343 4671832 complement(971087..971821) 1 NC_008782.1 KEGG: pol:Bpro_1339 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH 971821 4671832 Ajs_0923 Acidovorax sp. JS42 ribonuclease PH YP_985239.1 971087 R 232721 CDS YP_985240.1 121593344 4671863 complement(971898..972800) 1 NC_008782.1 PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 972800 4671863 Ajs_0924 Acidovorax sp. JS42 protein phosphatase 2C domain-containing protein YP_985240.1 971898 R 232721 CDS YP_985241.1 121593345 4671865 complement(972797..973813) 1 NC_008782.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase; serine/threonine protein kinase 973813 4671865 Ajs_0925 Acidovorax sp. JS42 serine/threonine protein kinase YP_985241.1 972797 R 232721 CDS YP_985242.1 121593346 4672521 973895..974803 1 NC_008782.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rfr:Rfer_1626 conserved hypothetical protein 255; hypothetical protein 974803 4672521 Ajs_0926 Acidovorax sp. JS42 hypothetical protein YP_985242.1 973895 D 232721 CDS YP_985243.1 121593347 4672053 974991..976268 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: nmu:Nmul_A0064 phage integrase; phage integrase family protein 976268 4672053 Ajs_0927 Acidovorax sp. JS42 phage integrase family protein YP_985243.1 974991 D 232721 CDS YP_985244.1 121593348 4671952 976265..976981 1 NC_008782.1 hypothetical protein 976981 4671952 Ajs_0928 Acidovorax sp. JS42 hypothetical protein YP_985244.1 976265 D 232721 CDS YP_985245.1 121593349 4671904 977050..977286 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A0062 putative transcriptional regulator; phage transcriptional regulator AlpA 977286 4671904 Ajs_0929 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_985245.1 977050 D 232721 CDS YP_985246.1 121593350 4672104 977517..978407 1 NC_008782.1 KEGG: tbd:Tbd_2069 hypothetical protein; hypothetical protein 978407 4672104 Ajs_0930 Acidovorax sp. JS42 hypothetical protein YP_985246.1 977517 D 232721 CDS YP_985247.1 121593351 4671845 978404..979816 1 NC_008782.1 KEGG: tbd:Tbd_2068 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 979816 4671845 Ajs_0931 Acidovorax sp. JS42 replicative DNA helicase YP_985247.1 978404 D 232721 CDS YP_985248.1 121593352 4672132 979806..980600 1 NC_008782.1 SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 980600 4672132 Ajs_0932 Acidovorax sp. JS42 XRE family transcriptional regulator YP_985248.1 979806 D 232721 CDS YP_985249.1 121593353 4672171 980597..981748 1 NC_008782.1 hypothetical protein 981748 4672171 Ajs_0933 Acidovorax sp. JS42 hypothetical protein YP_985249.1 980597 D 232721 CDS YP_985250.1 121593354 4672254 complement(981691..982053) 1 NC_008782.1 hypothetical protein 982053 4672254 Ajs_0934 Acidovorax sp. JS42 hypothetical protein YP_985250.1 981691 R 232721 CDS YP_985251.1 121593355 4672270 982077..982328 1 NC_008782.1 hypothetical protein 982328 4672270 Ajs_0935 Acidovorax sp. JS42 hypothetical protein YP_985251.1 982077 D 232721 CDS YP_985252.1 121593356 4672292 982405..983070 1 NC_008782.1 hypothetical protein 983070 4672292 Ajs_0936 Acidovorax sp. JS42 hypothetical protein YP_985252.1 982405 D 232721 CDS YP_985253.1 121593357 4672354 983385..984230 1 NC_008782.1 hypothetical protein 984230 4672354 Ajs_0937 Acidovorax sp. JS42 hypothetical protein YP_985253.1 983385 D 232721 CDS YP_985254.1 121593358 4672371 984227..985144 1 NC_008782.1 hypothetical protein 985144 4672371 Ajs_0938 Acidovorax sp. JS42 hypothetical protein YP_985254.1 984227 D 232721 CDS YP_985255.1 121593359 4672406 985362..985940 1 NC_008782.1 KEGG: eci:UTI89_C2655 hypothetical protein; hypothetical protein 985940 4672406 Ajs_0939 Acidovorax sp. JS42 hypothetical protein YP_985255.1 985362 D 232721 CDS YP_985256.1 121593360 4672039 complement(986652..986984) 1 NC_008782.1 hypothetical protein 986984 4672039 Ajs_0940 Acidovorax sp. JS42 hypothetical protein YP_985256.1 986652 R 232721 CDS YP_985257.1 121593361 4672412 complement(986965..987243) 1 NC_008782.1 hypothetical protein 987243 4672412 Ajs_0941 Acidovorax sp. JS42 hypothetical protein YP_985257.1 986965 R 232721 CDS YP_985258.1 121593362 4672419 complement(987240..987596) 1 NC_008782.1 hypothetical protein 987596 4672419 Ajs_0942 Acidovorax sp. JS42 hypothetical protein YP_985258.1 987240 R 232721 CDS YP_985259.1 121593363 4672044 987709..987915 1 NC_008782.1 KEGG: dar:Daro_2702 hypothetical protein; hypothetical protein 987915 4672044 Ajs_0943 Acidovorax sp. JS42 hypothetical protein YP_985259.1 987709 D 232721 CDS YP_985260.1 121593364 4672450 987930..988235 1 NC_008782.1 hypothetical protein 988235 4672450 Ajs_0944 Acidovorax sp. JS42 hypothetical protein YP_985260.1 987930 D 232721 CDS YP_985261.1 121593365 4672466 988266..988619 1 NC_008782.1 KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; RelE-like cytotoxic translational repressor of toxin-antitoxin stability system 988619 4672466 Ajs_0945 Acidovorax sp. JS42 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system YP_985261.1 988266 D 232721 CDS YP_985262.1 121593366 4672553 988616..988900 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: bpa:BPP2999 putative DNA-binding protein; helix-turn-helix domain-containing protein 988900 4672553 Ajs_0946 Acidovorax sp. JS42 helix-turn-helix domain-containing protein YP_985262.1 988616 D 232721 CDS YP_985263.1 121593367 4671993 989060..989680 1 NC_008782.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 989680 gmk 4671993 gmk Acidovorax sp. JS42 guanylate kinase YP_985263.1 989060 D 232721 CDS YP_985264.1 121593368 4672471 989696..989899 1 NC_008782.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 989899 4672471 Ajs_0948 Acidovorax sp. JS42 DNA-directed RNA polymerase subunit omega YP_985264.1 989696 D 232721 CDS YP_985265.1 121593369 4673198 990001..992265 1 NC_008782.1 KEGG: rfr:Rfer_3149 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 992265 4673198 Ajs_0949 Acidovorax sp. JS42 (p)ppGpp synthetase I SpoT/RelA YP_985265.1 990001 D 232721 CDS YP_985266.1 121593370 4672558 complement(992279..992839) 1 NC_008782.1 TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor; transcription elongation factor GreB 992839 4672558 Ajs_0950 Acidovorax sp. JS42 transcription elongation factor GreB YP_985266.1 992279 R 232721 CDS YP_985267.1 121593371 4672491 complement(993141..993413) 1 NC_008782.1 hypothetical protein 993413 4672491 Ajs_0951 Acidovorax sp. JS42 hypothetical protein YP_985267.1 993141 R 232721 CDS YP_985268.1 121593372 4672886 993663..993929 1 NC_008782.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 993929 rpsO 4672886 rpsO Acidovorax sp. JS42 30S ribosomal protein S15 YP_985268.1 993663 D 232721 CDS YP_985269.1 121593373 4672949 994145..996328 1 NC_008782.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: rfr:Rfer_1489 3' exoribonuclease; polynucleotide phosphorylase/polyadenylase 996328 4672949 Ajs_0953 Acidovorax sp. JS42 polynucleotide phosphorylase/polyadenylase YP_985269.1 994145 D 232721 CDS YP_985270.1 121593374 4673004 996428..997432 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1490 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 997432 4673004 Ajs_0954 Acidovorax sp. JS42 alcohol dehydrogenase YP_985270.1 996428 D 232721 CDS YP_985271.1 121593375 4673025 997429..998181 1 NC_008782.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 998181 tpiA 4673025 tpiA Acidovorax sp. JS42 triosephosphate isomerase YP_985271.1 997429 D 232721 CDS YP_985272.1 121593376 4673037 998220..998600 1 NC_008782.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit; protein translocase subunit secG 998600 4673037 Ajs_0956 Acidovorax sp. JS42 protein translocase subunit secG YP_985272.1 998220 D 232721 CDS YP_985273.1 121593377 4673060 998890..999249 1 NC_008782.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 999249 4673060 Ajs_0957 Acidovorax sp. JS42 NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 YP_985273.1 998890 D 232721 CDS YP_985274.1 121593378 4673082 999274..999753 1 NC_008782.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 999753 4673082 Ajs_0958 Acidovorax sp. JS42 NADH dehydrogenase subunit B YP_985274.1 999274 D 232721 CDS YP_985275.1 121593379 4673101 999764..1000372 1 NC_008782.1 KEGG: rfr:Rfer_1495 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1000372 4673101 Ajs_0959 Acidovorax sp. JS42 NADH (or F420H2) dehydrogenase subunit C YP_985275.1 999764 D 232721 CDS YP_985276.1 121593380 4673177 1000399..1001652 1 NC_008782.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1001652 4673177 Ajs_0960 Acidovorax sp. JS42 NADH dehydrogenase subunit D YP_985276.1 1000399 D 232721 CDS YP_985277.1 121593381 4673115 1001649..1002140 1 NC_008782.1 KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1002140 4673115 Ajs_0961 Acidovorax sp. JS42 NADH-quinone oxidoreductase subunit E YP_985277.1 1001649 D 232721 CDS YP_985278.1 121593382 4673879 1002137..1003498 1 NC_008782.1 KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1003498 4673879 Ajs_0962 Acidovorax sp. JS42 NADH-quinone oxidoreductase subunit F YP_985278.1 1002137 D 232721 CDS YP_985279.1 121593383 4673925 1003514..1005661 1 NC_008782.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1005661 4673925 Ajs_0963 Acidovorax sp. JS42 NADH dehydrogenase subunit G YP_985279.1 1003514 D 232721 CDS YP_985280.1 121593384 4673861 1005658..1006734 1 NC_008782.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1006734 4673861 Ajs_0964 Acidovorax sp. JS42 respiratory-chain NADH dehydrogenase subunit 1 YP_985280.1 1005658 D 232721 CDS YP_985281.1 121593385 4673207 1006747..1007259 1 NC_008782.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1007259 4673207 Ajs_0965 Acidovorax sp. JS42 NADH dehydrogenase subunit I YP_985281.1 1006747 D 232721 CDS YP_985282.1 121593386 4673367 1007304..1007972 1 NC_008782.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1007972 4673367 Ajs_0966 Acidovorax sp. JS42 NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 YP_985282.1 1007304 D 232721 CDS YP_985283.1 121593387 4673113 1007969..1008277 1 NC_008782.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rfr:Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1008277 4673113 Ajs_0967 Acidovorax sp. JS42 NADH-ubiquinone oxidoreductase subunit 4L YP_985283.1 1007969 D 232721 CDS YP_985284.1 121593388 4673396 1008309..1010327 1 NC_008782.1 KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1010327 4673396 Ajs_0968 Acidovorax sp. JS42 proton-translocating NADH-quinone oxidoreductase subunit L YP_985284.1 1008309 D 232721 CDS YP_985285.1 121593389 4673424 1010341..1011816 1 NC_008782.1 KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1011816 4673424 Ajs_0969 Acidovorax sp. JS42 proton-translocating NADH-quinone oxidoreductase subunit M YP_985285.1 1010341 D 232721 CDS YP_985286.1 121593390 4673480 1011841..1013334 1 NC_008782.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1013334 4673480 Ajs_0970 Acidovorax sp. JS42 NADH dehydrogenase subunit N YP_985286.1 1011841 D 232721 CDS YP_985287.1 121593391 4673679 1013353..1013676 1 NC_008782.1 KEGG: pol:Bpro_3242 putative transmembrane protein; hypothetical protein 1013676 4673679 Ajs_0971 Acidovorax sp. JS42 hypothetical protein YP_985287.1 1013353 D 232721 CDS YP_985288.1 121593392 4673746 1013683..1014150 1 NC_008782.1 PFAM: protein of unknown function DUF1178; KEGG: rfr:Rfer_1508 protein of unknown function DUF1178; hypothetical protein 1014150 4673746 Ajs_0972 Acidovorax sp. JS42 hypothetical protein YP_985288.1 1013683 D 232721 CDS YP_985289.1 121593393 4673759 complement(1014202..1016004) 1 NC_008782.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter-like protein 1016004 4673759 Ajs_0973 Acidovorax sp. JS42 ABC transporter-like protein YP_985289.1 1014202 R 232721 CDS YP_985290.1 121593394 4673760 complement(1016035..1016403) 1 NC_008782.1 hypothetical protein 1016403 4673760 Ajs_0974 Acidovorax sp. JS42 hypothetical protein YP_985290.1 1016035 R 232721 CDS YP_985291.1 121593395 4673771 1016452..1017057 1 NC_008782.1 KEGG: rfr:Rfer_3383 ABC transporter related; ABC-type transport system involved in cytochrome c biogenesis ATPase component-like protein 1017057 4673771 Ajs_0975 Acidovorax sp. JS42 ABC-type transport system involved in cytochrome c biogenesis ATPase component-like protein YP_985291.1 1016452 D 232721 CDS YP_985292.1 121593396 4673787 1017101..1017730 1 NC_008782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfo:Pfl_2160 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1017730 4673787 Ajs_0976 Acidovorax sp. JS42 lysine exporter protein LysE/YggA YP_985292.1 1017101 D 232721 CDS YP_985293.1 121593397 4673794 complement(1017794..1019137) 1 NC_008782.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1019137 4673794 Ajs_0977 Acidovorax sp. JS42 glutamate dehydrogenase YP_985293.1 1017794 R 232721 CDS YP_985294.1 121593398 4673802 complement(1019468..1021441) 1 NC_008782.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 1021441 4673802 Ajs_0978 Acidovorax sp. JS42 DNA mismatch repair protein MutL YP_985294.1 1019468 R 232721 CDS YP_985295.1 121593399 4673819 complement(1021485..1021736) 1 NC_008782.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen; 17 kDa surface antigen 1021736 4673819 Ajs_0979 Acidovorax sp. JS42 17 kDa surface antigen YP_985295.1 1021485 R 232721 CDS YP_985296.1 121593400 4673824 1021950..1022612 1 NC_008782.1 KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein); DedA protein (DSG-1 protein) 1022612 4673824 Ajs_0980 Acidovorax sp. JS42 DedA protein (DSG-1 protein) YP_985296.1 1021950 D 232721 CDS YP_985297.1 121593401 4673839 1022685..1022993 1 NC_008782.1 hypothetical protein 1022993 4673839 Ajs_0981 Acidovorax sp. JS42 hypothetical protein YP_985297.1 1022685 D 232721 CDS YP_985298.1 121593402 4673841 complement(1023072..1023404) 1 NC_008782.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: rme:Rmet_5777 cupin 2, conserved barrel; cupin 2 domain-containing protein 1023404 4673841 Ajs_0982 Acidovorax sp. JS42 cupin 2 domain-containing protein YP_985298.1 1023072 R 232721 CDS YP_985299.1 121593403 4674005 complement(1023439..1024887) 1 NC_008782.1 PFAM: cell wall hydrolase/autolysin; KEGG: rfr:Rfer_3303 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 1024887 4674005 Ajs_0983 Acidovorax sp. JS42 N-acetylmuramoyl-L-alanine amidase YP_985299.1 1023439 R 232721 CDS YP_985300.1 121593404 4674109 1025376..1026461 1 NC_008782.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding; putative iron-sulfur cluster-binding protein 1026461 4674109 Ajs_0985 Acidovorax sp. JS42 putative iron-sulfur cluster-binding protein YP_985300.1 1025376 D 232721 CDS YP_985301.1 121593405 4674088 complement(1026516..1027433) 1 NC_008782.1 PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2655 auxin efflux carrier; auxin efflux carrier 1027433 4674088 Ajs_0986 Acidovorax sp. JS42 auxin efflux carrier YP_985301.1 1026516 R 232721 CDS YP_985302.1 121593406 4674009 1027585..1028547 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065; hypothetical protein 1028547 4674009 Ajs_0987 Acidovorax sp. JS42 hypothetical protein YP_985302.1 1027585 D 232721 CDS YP_985303.1 121593407 4674715 1028604..1029515 1 NC_008782.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD; tyrosine recombinase XerD 1029515 4674715 Ajs_0988 Acidovorax sp. JS42 tyrosine recombinase XerD YP_985303.1 1028604 D 232721 CDS YP_985304.1 121593408 4674597 1029595..1030572 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0026 uncharacterized protein UPF0065; hypothetical protein 1030572 4674597 Ajs_0989 Acidovorax sp. JS42 hypothetical protein YP_985304.1 1029595 D 232721 CDS YP_985305.1 121593409 4674635 complement(1030623..1031918) 1 NC_008782.1 PFAM: EAL domain protein; HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase 1031918 4674635 Ajs_0990 Acidovorax sp. JS42 diguanylate phosphodiesterase YP_985305.1 1030623 R 232721 CDS YP_985306.1 121593410 4674576 complement(1031969..1033240) 1 NC_008782.1 PFAM: EAL domain protein; HDOD; KEGG: cvi:CV3451 putative signal transduction protein containing EAL and modified HD-GYP domains; diguanylate phosphodiesterase 1033240 4674576 Ajs_0991 Acidovorax sp. JS42 diguanylate phosphodiesterase YP_985306.1 1031969 R 232721 CDS YP_985307.1 121593411 4674552 complement(1033388..1034194) 1 NC_008782.1 PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455; hypothetical protein 1034194 4674552 Ajs_0992 Acidovorax sp. JS42 hypothetical protein YP_985307.1 1033388 R 232721 CDS YP_985308.1 121593412 4674506 1034244..1034768 1 NC_008782.1 KEGG: rfr:Rfer_2653 transferase hexapeptide protein; transferase hexapeptide protein 1034768 4674506 Ajs_0993 Acidovorax sp. JS42 transferase hexapeptide protein YP_985308.1 1034244 D 232721 CDS YP_985309.1 121593413 4674481 1034780..1035787 1 NC_008782.1 PFAM: Hsp33 protein; KEGG: rfr:Rfer_2652 HSP33 protein; Hsp33 protein 1035787 4674481 Ajs_0994 Acidovorax sp. JS42 Hsp33 protein YP_985309.1 1034780 D 232721 CDS YP_985310.1 121593414 4674421 complement(1035880..1036344) 1 NC_008782.1 KEGG: pol:Bpro_3186 hypothetical protein; hypothetical protein 1036344 4674421 Ajs_0995 Acidovorax sp. JS42 hypothetical protein YP_985310.1 1035880 R 232721 CDS YP_985311.1 121593415 4674387 complement(1036341..1036625) 1 NC_008782.1 PFAM: Septum formation initiator; KEGG: rfr:Rfer_2651 septum formation initiator; cell division protein FtsB 1036625 4674387 Ajs_0996 Acidovorax sp. JS42 cell division protein FtsB YP_985311.1 1036341 R 232721 CDS YP_985312.1 121593416 4674385 complement(1036652..1037938) 1 NC_008782.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1037938 eno 4674385 eno Acidovorax sp. JS42 phosphopyruvate hydratase YP_985312.1 1036652 R 232721 CDS YP_985313.1 121593417 4674136 complement(1038317..1039174) 1 NC_008782.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1039174 4674136 Ajs_0999 Acidovorax sp. JS42 2-dehydro-3-deoxyphosphooctonate aldolase YP_985313.1 1038317 R 232721 CDS YP_985314.1 121593418 4674306 complement(1039190..1040848) 1 NC_008782.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1040848 pyrG 4674306 pyrG Acidovorax sp. JS42 CTP synthetase YP_985314.1 1039190 R 232721 CDS YP_985315.1 121593419 4674270 1040940..1042160 1 NC_008782.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase 1042160 4674270 Ajs_1001 Acidovorax sp. JS42 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase YP_985315.1 1040940 D 232721 CDS YP_985316.1 121593420 4674279 1042258..1042704 1 NC_008782.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1042704 dut 4674279 dut Acidovorax sp. JS42 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_985316.1 1042258 D 232721 CDS YP_985317.1 121593421 4674195 1042870..1043367 1 NC_008782.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen; 17 kDa surface antigen 1043367 4674195 Ajs_1003 Acidovorax sp. JS42 17 kDa surface antigen YP_985317.1 1042870 D 232721 CDS YP_985318.1 121593422 4674252 complement(1043462..1043986) 1 NC_008782.1 KEGG: rfr:Rfer_2645 fkbp-type peptidyl-prolyl cis-trans isomerase; fkbp-type peptidyl-prolyl cis-trans isomerase 1043986 4674252 Ajs_1004 Acidovorax sp. JS42 fkbp-type peptidyl-prolyl cis-trans isomerase YP_985318.1 1043462 R 232721 CDS YP_985319.1 121593423 4674046 1044040..1045161 1 NC_008782.1 PFAM: AraC protein, arabinose-binding/dimerisation; Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: rfr:Rfer_2644 cupin 4; cupin 4 family protein 1045161 4674046 Ajs_1005 Acidovorax sp. JS42 cupin 4 family protein YP_985319.1 1044040 D 232721 CDS YP_985320.1 121593424 4674134 1045185..1045697 1 NC_008782.1 KEGG: rfr:Rfer_2643 hypothetical protein; hypothetical protein 1045697 4674134 Ajs_1006 Acidovorax sp. JS42 hypothetical protein YP_985320.1 1045185 D 232721 CDS YP_985321.1 121593425 4674164 1045877..1046158 1 NC_008782.1 KEGG: dar:Daro_0849 hypothetical protein; hypothetical protein 1046158 4674164 Ajs_1007 Acidovorax sp. JS42 hypothetical protein YP_985321.1 1045877 D 232721 CDS YP_985322.1 121593426 4673298 complement(1046247..1047029) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like; beta-lactamase domain-containing protein 1047029 4673298 Ajs_1008 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_985322.1 1046247 R 232721 CDS YP_985323.1 121593427 4673612 complement(1047063..1048205) 1 NC_008782.1 PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein; NlpB/DapX family lipoprotein 1048205 4673612 Ajs_1009 Acidovorax sp. JS42 NlpB/DapX family lipoprotein YP_985323.1 1047063 R 232721 CDS YP_985324.1 121593428 4673524 complement(1048235..1049131) 1 NC_008782.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1049131 4673524 Ajs_1010 Acidovorax sp. JS42 dihydrodipicolinate synthase YP_985324.1 1048235 R 232721 CDS YP_985325.1 121593429 4673241 complement(1049166..1049750) 1 NC_008782.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3169 methyltransferase type 11; type 12 methyltransferase 1049750 4673241 Ajs_1011 Acidovorax sp. JS42 type 12 methyltransferase YP_985325.1 1049166 R 232721 CDS YP_985326.1 121593430 4673231 complement(1049753..1049881) 1 NC_008782.1 hypothetical protein 1049881 4673231 Ajs_1012 Acidovorax sp. JS42 hypothetical protein YP_985326.1 1049753 R 232721 CDS YP_985327.1 121593431 4673365 complement(1049884..1051101) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1051101 4673365 Ajs_1013 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985327.1 1049884 R 232721 CDS YP_985328.1 121593432 4672899 1051218..1053200 1 NC_008782.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1053200 4672899 Ajs_1014 Acidovorax sp. JS42 DNA topoisomerase IV subunit B YP_985328.1 1051218 D 232721 CDS YP_985329.1 121593433 4672666 1053239..1054117 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1054117 4672666 Ajs_1015 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985329.1 1053239 D 232721 CDS YP_985330.1 121593434 4672672 1054114..1056468 1 NC_008782.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1056468 4672672 Ajs_1016 Acidovorax sp. JS42 DNA topoisomerase IV subunit A YP_985330.1 1054114 D 232721 CDS YP_985331.1 121593435 4672800 1056661..1058436 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1058436 4672800 Ajs_1017 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_985331.1 1056661 D 232721 CDS YP_985332.1 121593436 4672702 complement(1058570..1059028) 1 NC_008782.1 PFAM: Endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP; endoribonuclease L-PSP 1059028 4672702 Ajs_1018 Acidovorax sp. JS42 endoribonuclease L-PSP YP_985332.1 1058570 R 232721 CDS YP_985333.1 121593437 4672247 1061805..1063268 1 NC_008782.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404; hypothetical protein 1063268 4672247 Ajs_1020 Acidovorax sp. JS42 hypothetical protein YP_985333.1 1061805 D 232721 CDS YP_985334.1 121593438 4672192 1063717..1064685 1 NC_008782.1 PFAM: protein of unknown function DUF403; KEGG: rfr:Rfer_2473 protein of unknown function DUF403; hypothetical protein 1064685 4672192 Ajs_1021 Acidovorax sp. JS42 hypothetical protein YP_985334.1 1063717 D 232721 CDS YP_985335.1 121593439 4672173 complement(1064719..1065096) 1 NC_008782.1 hypothetical protein 1065096 4672173 Ajs_1022 Acidovorax sp. JS42 hypothetical protein YP_985335.1 1064719 R 232721 CDS YP_985336.1 121593440 4672139 complement(1065250..1065522) 1 NC_008782.1 KEGG: rfr:Rfer_1416 hypothetical protein; hypothetical protein 1065522 4672139 Ajs_1023 Acidovorax sp. JS42 hypothetical protein YP_985336.1 1065250 R 232721 CDS YP_985337.1 121593441 4671921 complement(1065632..1066546) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family; LysR family transcriptional regulator 1066546 4671921 Ajs_1024 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985337.1 1065632 R 232721 CDS YP_985338.1 121593442 4671425 1067547..1068983 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_0086 aldehyde dehydrogenase; 2,5-dioxopentanoate dehydrogenase 1068983 4671425 Ajs_1026 Acidovorax sp. JS42 2,5-dioxopentanoate dehydrogenase YP_985338.1 1067547 D 232721 CDS YP_985339.1 121593443 4671490 complement(1069040..1071193) 1 NC_008782.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1785 putative ferrisiderophore receptor; TonB-dependent siderophore receptor 1071193 4671490 Ajs_1027 Acidovorax sp. JS42 TonB-dependent siderophore receptor YP_985339.1 1069040 R 232721 CDS YP_985340.1 121593444 4671628 complement(1071268..1073424) 1 NC_008782.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gvi:glr0349 ferrichrome-iron receptor; TonB-dependent siderophore receptor 1073424 4671628 Ajs_1028 Acidovorax sp. JS42 TonB-dependent siderophore receptor YP_985340.1 1071268 R 232721 CDS YP_985341.1 121593445 4671593 complement(1073457..1074182) 1 NC_008782.1 KEGG: bxe:Bxe_C0724 hypothetical protein; hypothetical protein 1074182 4671593 Ajs_1029 Acidovorax sp. JS42 hypothetical protein YP_985341.1 1073457 R 232721 CDS YP_985342.1 121593446 4671581 complement(1074448..1074795) 1 NC_008782.1 KEGG: pfl:PFL_0987 hypothetical protein; hypothetical protein 1074795 4671581 Ajs_1030 Acidovorax sp. JS42 hypothetical protein YP_985342.1 1074448 R 232721 CDS YP_985343.1 121593447 4671534 complement(1074797..1076479) 1 NC_008782.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bbr:BB3604 putative iron uptake protein; PepSY-associated TM helix domain-containing protein 1076479 4671534 Ajs_1031 Acidovorax sp. JS42 PepSY-associated TM helix domain-containing protein YP_985343.1 1074797 R 232721 CDS YP_985344.1 121593448 4671525 complement(1076476..1076784) 1 NC_008782.1 KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein 1076784 4671525 Ajs_1032 Acidovorax sp. JS42 putative iron uptake protein YP_985344.1 1076476 R 232721 CDS YP_985345.1 121593449 4670998 complement(1077108..1078040) 1 NC_008782.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase 1078040 4670998 Ajs_1033 Acidovorax sp. JS42 3-mercaptopyruvate sulfurtransferase YP_985345.1 1077108 R 232721 CDS YP_985346.1 121593450 4670928 complement(1078068..1078979) 1 NC_008782.1 KEGG: pol:Bpro_1743 putative transmembrane protein; hypothetical protein 1078979 4670928 Ajs_1034 Acidovorax sp. JS42 hypothetical protein YP_985346.1 1078068 R 232721 CDS YP_985347.1 121593451 4670531 complement(1079077..1080216) 1 NC_008782.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein 1080216 4670531 Ajs_1035 Acidovorax sp. JS42 Rieske (2Fe-2S) domain-containing protein YP_985347.1 1079077 R 232721 CDS YP_985348.1 121593452 4670855 1080499..1080768 1 NC_008782.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1080768 4670855 Ajs_1036 Acidovorax sp. JS42 exodeoxyribonuclease VII small subunit YP_985348.1 1080499 D 232721 CDS YP_985349.1 121593453 4670784 1080765..1081700 1 NC_008782.1 PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; farnesyl-diphosphate synthase 1081700 4670784 Ajs_1037 Acidovorax sp. JS42 farnesyl-diphosphate synthase YP_985349.1 1080765 D 232721 CDS YP_985350.1 121593454 4670731 1081806..1083695 1 NC_008782.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1083695 4670731 Ajs_1038 Acidovorax sp. JS42 1-deoxy-D-xylulose-5-phosphate synthase YP_985350.1 1081806 D 232721 CDS YP_985351.1 121593455 4670644 1083969..1085051 1 NC_008782.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 1085051 4670644 Ajs_1039 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_985351.1 1083969 D 232721 CDS YP_985352.1 121593456 4674457 complement(1085191..1087017) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1087017 4674457 Ajs_1040 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_985352.1 1085191 R 232721 CDS YP_985353.1 121593457 4674069 complement(1087039..1087665) 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1087665 4674069 Ajs_1041 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_985353.1 1087039 R 232721 CDS YP_985354.1 121593458 4674152 complement(1087989..1089860) 1 NC_008782.1 KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 1089860 4674152 Ajs_1042 Acidovorax sp. JS42 gamma-glutamyltransferase 1 YP_985354.1 1087989 R 232721 CDS YP_985355.1 121593459 4674087 1095026..1096159 1 NC_008782.1 PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb4144 response regulator containing a CheY-like receiver domain and an HD-GYP domain; response regulator receiver modulated metal dependent phosphohydrolase 1096159 4674087 Ajs_1044 Acidovorax sp. JS42 response regulator receiver modulated metal dependent phosphohydrolase YP_985355.1 1095026 D 232721 CDS YP_985356.1 121593460 4674081 complement(1096243..1097286) 1 NC_008782.1 PFAM: inositol monophosphatase; KEGG: rfr:Rfer_2892 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase 1097286 4674081 Ajs_1045 Acidovorax sp. JS42 inositol-phosphate phosphatase YP_985356.1 1096243 R 232721 CDS YP_985357.1 121593461 4674057 1097382..1098176 1 NC_008782.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1; RNA methyltransferase 1098176 4674057 Ajs_1046 Acidovorax sp. JS42 RNA methyltransferase YP_985357.1 1097382 D 232721 CDS YP_985358.1 121593462 4674082 1098210..1099001 1 NC_008782.1 TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase; serine O-acetyltransferase 1099001 4674082 Ajs_1047 Acidovorax sp. JS42 serine O-acetyltransferase YP_985358.1 1098210 D 232721 CDS YP_985359.1 121593463 4671344 1099010..1099669 1 NC_008782.1 PFAM: nitroreductase; KEGG: ccr:CC0324 NADH dehydrogenase; nitroreductase 1099669 4671344 Ajs_1048 Acidovorax sp. JS42 nitroreductase YP_985359.1 1099010 D 232721 CDS YP_985360.1 121593464 4670615 complement(1099786..1100886) 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent); alcohol dehydrogenase 1100886 4670615 Ajs_1049 Acidovorax sp. JS42 alcohol dehydrogenase YP_985360.1 1099786 R 232721 CDS YP_985361.1 121593465 4670619 complement(1100944..1102590) 1 NC_008782.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: bma:BMA1270 sulfate permease family protein; sulfate transporter 1102590 4670619 Ajs_1050 Acidovorax sp. JS42 sulfate transporter YP_985361.1 1100944 R 232721 CDS YP_985362.1 121593466 4670641 complement(1102619..1103227) 1 NC_008782.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: rfr:Rfer_2889 molybdopterin binding domain; molybdopterin adenylyltransferase 1103227 4670641 Ajs_1051 Acidovorax sp. JS42 molybdopterin adenylyltransferase YP_985362.1 1102619 R 232721 CDS YP_985363.1 121593467 4670656 complement(1103220..1103882) 1 NC_008782.1 PFAM: protein of unknown function DUF615; KEGG: rfr:Rfer_2888 protein of unknown function DUF615; hypothetical protein 1103882 4670656 Ajs_1052 Acidovorax sp. JS42 hypothetical protein YP_985363.1 1103220 R 232721 CDS YP_985364.1 121593468 4670662 1103927..1105387 1 NC_008782.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_2887 peptidase U62, modulator of DNA gyrase; microcin-processing peptidase 1 1105387 4670662 Ajs_1053 Acidovorax sp. JS42 microcin-processing peptidase 1 YP_985364.1 1103927 D 232721 CDS YP_985365.1 121593469 4670702 1105413..1106333 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: cvi:CV1904 probable transmembrane protein, DMT Superfamily; hypothetical protein 1106333 4670702 Ajs_1054 Acidovorax sp. JS42 hypothetical protein YP_985365.1 1105413 D 232721 CDS YP_985366.1 121593470 4670713 complement(1106418..1107446) 1 NC_008782.1 KEGG: eba:ebA7139 hypothetical protein, INTERPRO suggestion: probable sugar transporter superfamily; hypothetical protein 1107446 4670713 Ajs_1055 Acidovorax sp. JS42 hypothetical protein YP_985366.1 1106418 R 232721 CDS YP_985367.1 121593471 4670727 complement(1107589..1109229) 1 NC_008782.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; fumarase 1109229 4670727 Ajs_1056 Acidovorax sp. JS42 fumarase YP_985367.1 1107589 R 232721 CDS YP_985368.1 121593472 4670733 1109347..1110738 1 NC_008782.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1110738 fumC 4670733 fumC Acidovorax sp. JS42 fumarate hydratase YP_985368.1 1109347 D 232721 CDS YP_985369.1 121593473 4670786 complement(1110783..1111559) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rfr:Rfer_3326 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 1111559 4670786 Ajs_1058 Acidovorax sp. JS42 CRP/FNR family transcriptional regulator YP_985369.1 1110783 R 232721 CDS YP_985370.1 121593474 4670791 complement(1111750..1112478) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfv:SFV_2140 transcriptional response regulatory protein; two component transcriptional regulator 1112478 4670791 Ajs_1059 Acidovorax sp. JS42 two component transcriptional regulator YP_985370.1 1111750 R 232721 CDS YP_985371.1 121593475 4670795 complement(1112475..1114007) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2867 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 1114007 4670795 Ajs_1060 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_985371.1 1112475 R 232721 CDS YP_985372.1 121593476 4670807 complement(1114205..1115056) 1 NC_008782.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit 1115056 proX 4670807 proX Acidovorax sp. JS42 glycine betaine transporter periplasmic subunit YP_985372.1 1114205 R 232721 CDS YP_985373.1 121593477 4670808 complement(1115353..1116432) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1116432 4670808 Ajs_1062 Acidovorax sp. JS42 integrase catalytic subunit YP_985373.1 1115353 R 232721 CDS YP_985374.1 121593478 4670818 complement(1116486..1116734) 1 NC_008782.1 KEGG: rru:Rru_A2477 substrate-binding region of ABC-type glycine betaine transport system; hypothetical protein 1116734 4670818 Ajs_1063 Acidovorax sp. JS42 hypothetical protein YP_985374.1 1116486 R 232721 CDS YP_985375.1 121593479 4670819 complement(1116771..1117973) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2476 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1117973 4670819 Ajs_1064 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_985375.1 1116771 R 232721 CDS YP_985376.1 121593480 4670893 complement(1117998..1119374) 1 NC_008782.1 KEGG: sbo:SBO_2839 ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1119374 4670893 Ajs_1065 Acidovorax sp. JS42 glycine betaine/L-proline ABC transporter ATPase YP_985376.1 1117998 R 232721 CDS YP_985377.1 121593481 4670951 complement(1119944..1120555) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114; hypothetical protein 1120555 4670951 Ajs_1066 Acidovorax sp. JS42 hypothetical protein YP_985377.1 1119944 R 232721 CDS YP_985378.1 121593482 4670964 1120761..1122758 1 NC_008782.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2581 acetate--CoA ligase; acetyl-coenzyme A synthetase 1122758 4670964 Ajs_1067 Acidovorax sp. JS42 acetyl-coenzyme A synthetase YP_985378.1 1120761 D 232721 CDS YP_985379.1 121593483 4670976 1123355..1123864 1 NC_008782.1 KEGG: rfr:Rfer_3310 hypothetical protein; hypothetical protein 1123864 4670976 Ajs_1068 Acidovorax sp. JS42 hypothetical protein YP_985379.1 1123355 D 232721 CDS YP_985380.1 121593484 4670992 complement(1123951..1124256) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c 1124256 4670992 Ajs_1069 Acidovorax sp. JS42 class I cytochrome c YP_985380.1 1123951 R 232721 CDS YP_985381.1 121593485 4671019 1124365..1124607 1 NC_008782.1 KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein 1124607 4671019 Ajs_1070 Acidovorax sp. JS42 hypothetical protein YP_985381.1 1124365 D 232721 CDS YP_985382.1 121593486 4670553 complement(1124740..1126434) 1 NC_008782.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1126434 4670553 Ajs_1071 Acidovorax sp. JS42 dihydroxy-acid dehydratase YP_985382.1 1124740 R 232721 CDS YP_985383.1 121593487 4671026 1126664..1128520 1 NC_008782.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1128520 4671026 Ajs_1072 Acidovorax sp. JS42 dihydroxy-acid dehydratase YP_985383.1 1126664 D 232721 CDS YP_985384.1 121593488 4671027 1128663..1129103 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mlo:mlr6946 hypothetical protein; hypothetical protein 1129103 4671027 Ajs_1073 Acidovorax sp. JS42 hypothetical protein YP_985384.1 1128663 D 232721 CDS YP_985385.1 121593489 4671049 complement(1129117..1129599) 1 NC_008782.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: xac:XAC1438 bacterioferritin; bacterioferritin 1129599 4671049 Ajs_1074 Acidovorax sp. JS42 bacterioferritin YP_985385.1 1129117 R 232721 CDS YP_985386.1 121593490 4671083 1129772..1130605 1 NC_008782.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1130605 4671083 Ajs_1075 Acidovorax sp. JS42 prolipoprotein diacylglyceryl transferase YP_985386.1 1129772 D 232721 CDS YP_985387.1 121593491 4671098 1130841..1131512 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2090 transcriptional regulator, GntR family; GntR family transcriptional regulator 1131512 4671098 Ajs_1076 Acidovorax sp. JS42 GntR family transcriptional regulator YP_985387.1 1130841 D 232721 CDS YP_985388.1 121593492 4671111 1131509..1132969 1 NC_008782.1 PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 1132969 4671111 Ajs_1077 Acidovorax sp. JS42 malonyl-CoA decarboxylase YP_985388.1 1131509 D 232721 CDS YP_985389.1 121593493 4671113 1133116..1134150 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal; hypothetical protein 1134150 4671113 Ajs_1078 Acidovorax sp. JS42 hypothetical protein YP_985389.1 1133116 D 232721 CDS YP_985390.1 121593494 4671164 1134218..1135045 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1924 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1135045 4671164 Ajs_1079 Acidovorax sp. JS42 enoyl-CoA hydratase/isomerase YP_985390.1 1134218 D 232721 CDS YP_985391.1 121593495 4671177 1135067..1136626 1 NC_008782.1 catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 1136626 4671177 Ajs_1080 Acidovorax sp. JS42 malonyl-CoA synthase YP_985391.1 1135067 D 232721 CDS YP_985392.1 121593496 4671178 complement(1136732..1137175) 1 NC_008782.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 UspA; UspA domain-containing protein 1137175 4671178 Ajs_1081 Acidovorax sp. JS42 UspA domain-containing protein YP_985392.1 1136732 R 232721 CDS YP_985393.1 121593497 4671252 1137248..1139689 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1139689 4671252 Ajs_1082 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985393.1 1137248 D 232721 CDS YP_985394.1 121593498 4671241 1139691..1139828 1 NC_008782.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 1139828 4671241 Ajs_1083 Acidovorax sp. JS42 cbb3-type cytochrome oxidase maturation protein YP_985394.1 1139691 D 232721 CDS YP_985395.1 121593499 4674160 1139894..1141333 1 NC_008782.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1141333 4674160 Ajs_1084 Acidovorax sp. JS42 cbb3-type cytochrome c oxidase subunit I YP_985395.1 1139894 D 232721 CDS YP_985396.1 121593500 4674206 1141353..1141985 1 NC_008782.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1141985 4674206 Ajs_1085 Acidovorax sp. JS42 cbb3-type cytochrome c oxidase subunit II YP_985396.1 1141353 D 232721 CDS YP_985397.1 121593501 4671267 1142000..1142137 1 NC_008782.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component; Cbb3-type cytochrome oxidase component 1142137 4671267 Ajs_1086 Acidovorax sp. JS42 Cbb3-type cytochrome oxidase component YP_985397.1 1142000 D 232721 CDS YP_985398.1 121593502 4671262 1142167..1143081 1 NC_008782.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: pol:Bpro_4302 cytochrome c oxidase, cbb3-type, subunit III; cbb3-type cytochrome c oxidase subunit III 1143081 4671262 Ajs_1087 Acidovorax sp. JS42 cbb3-type cytochrome c oxidase subunit III YP_985398.1 1142167 D 232721 CDS YP_985399.1 121593503 4671240 1143166..1144608 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1144608 4671240 Ajs_1088 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_985399.1 1143166 D 232721 CDS YP_985400.1 121593504 4671218 1144670..1144948 1 NC_008782.1 KEGG: pol:Bpro_4300 hypothetical protein; hypothetical protein 1144948 4671218 Ajs_1089 Acidovorax sp. JS42 hypothetical protein YP_985400.1 1144670 D 232721 CDS YP_985401.1 121593505 4671185 1144986..1145312 1 NC_008782.1 KEGG: rfr:Rfer_1936 hypothetical protein; hypothetical protein 1145312 4671185 Ajs_1090 Acidovorax sp. JS42 hypothetical protein YP_985401.1 1144986 D 232721 CDS YP_985402.1 121593506 4671422 complement(1145353..1146096) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 1146096 4671422 Ajs_1091 Acidovorax sp. JS42 CRP/FNR family transcriptional regulator YP_985402.1 1145353 R 232721 CDS YP_985403.1 121593507 4671439 1146268..1147650 1 NC_008782.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1147650 4671439 Ajs_1092 Acidovorax sp. JS42 coproporphyrinogen III oxidase YP_985403.1 1146268 D 232721 CDS YP_985404.1 121593508 4671522 1147654..1148373 1 NC_008782.1 KEGG: pol:Bpro_1209 hypothetical protein; hypothetical protein 1148373 4671522 Ajs_1093 Acidovorax sp. JS42 hypothetical protein YP_985404.1 1147654 D 232721 CDS YP_985405.1 121593509 4671401 complement(1149012..1149356) 1 NC_008782.1 PFAM: protein of unknown function DUF710; KEGG: rfr:Rfer_2627 protein of unknown function DUF710; cell division protein ZapA 1149356 4671401 Ajs_1094 Acidovorax sp. JS42 cell division protein ZapA YP_985405.1 1149012 R 232721 CDS YP_985406.1 121593510 4671489 complement(1149353..1149592) 1 NC_008782.1 KEGG: rfr:Rfer_2626 hypothetical protein; hypothetical protein 1149592 4671489 Ajs_1095 Acidovorax sp. JS42 hypothetical protein YP_985406.1 1149353 R 232721 CDS YP_985407.1 121593511 4671538 1149951..1151831 1 NC_008782.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein; TonB-dependent receptor 1151831 4671538 Ajs_1096 Acidovorax sp. JS42 TonB-dependent receptor YP_985407.1 1149951 D 232721 CDS YP_985408.1 121593512 4671312 1151854..1153212 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase; hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase 1153212 4671312 Ajs_1097 Acidovorax sp. JS42 hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase YP_985408.1 1151854 D 232721 CDS YP_985409.1 121593513 4671328 1153209..1153808 1 NC_008782.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: rfr:Rfer_2622 cobalbumin biosynthesis enzyme; adenosylcobinamide kinase 1153808 4671328 Ajs_1098 Acidovorax sp. JS42 adenosylcobinamide kinase YP_985409.1 1153209 D 232721 CDS YP_985410.1 121593514 4671347 1153805..1154695 1 NC_008782.1 PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein; periplasmic-binding protein 1154695 4671347 Ajs_1099 Acidovorax sp. JS42 periplasmic-binding protein YP_985410.1 1153805 D 232721 CDS YP_985411.1 121593515 4671331 1154692..1155774 1 NC_008782.1 PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease 1155774 4671331 Ajs_1100 Acidovorax sp. JS42 transport system permease YP_985411.1 1154692 D 232721 CDS YP_985412.1 121593516 4671306 1155771..1156553 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related; ABC transporter-like protein 1156553 4671306 Ajs_1101 Acidovorax sp. JS42 ABC transporter-like protein YP_985412.1 1155771 D 232721 CDS YP_985413.1 121593517 4671322 1156914..1157483 1 NC_008782.1 KEGG: rfr:Rfer_2618 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)yrinic acid a,c-diamide adenosyltransferase 1157483 4671322 Ajs_1102 Acidovorax sp. JS42 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_985413.1 1156914 D 232721 CDS YP_985414.1 121593518 4671266 complement(1158904..1159230) 1 NC_008782.1 KEGG: sma:SAV1685 hypothetical protein; hypothetical protein 1159230 4671266 Ajs_1105 Acidovorax sp. JS42 hypothetical protein YP_985414.1 1158904 R 232721 CDS YP_985415.1 121593519 4671577 complement(1159398..1160084) 1 NC_008782.1 KEGG: dar:Daro_3102 hypothetical protein; hypothetical protein 1160084 4671577 Ajs_1106 Acidovorax sp. JS42 hypothetical protein YP_985415.1 1159398 R 232721 CDS YP_985416.1 121593520 4671578 complement(1160193..1161419) 1 NC_008782.1 PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 1161419 4671578 Ajs_1107 Acidovorax sp. JS42 transposase, mutator type YP_985416.1 1160193 R 232721 CDS YP_985417.1 121593521 4671263 complement(1161652..1162377) 1 NC_008782.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rxy:Rxyl_0508 haloacid dehalogenase, type II; haloacid dehalogenase 1162377 4671263 Ajs_1108 Acidovorax sp. JS42 haloacid dehalogenase YP_985417.1 1161652 R 232721 CDS YP_985418.1 121593522 4671258 1162521..1163756 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_4025 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1163756 4671258 Ajs_1109 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985418.1 1162521 D 232721 CDS YP_985419.1 121593523 4671269 complement(1163831..1164970) 1 NC_008782.1 KEGG: bpa:BPP1290 hypothetical protein; hypothetical protein 1164970 4671269 Ajs_1110 Acidovorax sp. JS42 hypothetical protein YP_985419.1 1163831 R 232721 CDS YP_985420.1 121593524 4671265 complement(1164975..1165451) 1 NC_008782.1 PFAM: regulatory protein, MarR; KEGG: gme:Gmet_0359 transcriptional regulator, MarR family; MarR family transcriptional regulator 1165451 4671265 Ajs_1111 Acidovorax sp. JS42 MarR family transcriptional regulator YP_985420.1 1164975 R 232721 CDS YP_985421.1 121593525 4671259 complement(1165547..1167856) 1 NC_008782.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 1167856 4671259 Ajs_1112 Acidovorax sp. JS42 malic enzyme YP_985421.1 1165547 R 232721 CDS YP_985422.1 121593526 4671227 complement(1168046..1169533) 1 NC_008782.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein; uracil-xanthine permease 1169533 4671227 Ajs_1113 Acidovorax sp. JS42 uracil-xanthine permease YP_985422.1 1168046 R 232721 CDS YP_985423.1 121593527 4671243 complement(1169838..1171127) 1 NC_008782.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; peptidase dimerisation domain-containing protein 1171127 4671243 Ajs_1114 Acidovorax sp. JS42 peptidase dimerisation domain-containing protein YP_985423.1 1169838 R 232721 CDS YP_985424.1 121593528 4671250 complement(1171135..1172904) 1 NC_008782.1 putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase 1172904 4671250 Ajs_1115 Acidovorax sp. JS42 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase YP_985424.1 1171135 R 232721 CDS YP_985425.1 121593529 4671221 complement(1172956..1174182) 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1174182 4671221 Ajs_1116 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_985425.1 1172956 R 232721 CDS YP_985426.1 121593530 4671223 complement(1174409..1175368) 1 NC_008782.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase; polysaccharide deacetylase 1175368 4671223 Ajs_1117 Acidovorax sp. JS42 polysaccharide deacetylase YP_985426.1 1174409 R 232721 CDS YP_985427.1 121593531 4671212 complement(1175365..1176042) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1425 transcriptional regulator, GntR family; GntR family transcriptional regulator 1176042 4671212 Ajs_1118 Acidovorax sp. JS42 GntR family transcriptional regulator YP_985427.1 1175365 R 232721 CDS YP_985428.1 121593532 4671206 complement(1176095..1177009) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family; LysR family transcriptional regulator 1177009 4671206 Ajs_1119 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985428.1 1176095 R 232721 CDS YP_985429.1 121593533 4671205 1177132..1178229 1 NC_008782.1 KEGG: bxe:Bxe_B1620 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1178229 4671205 Ajs_1120 Acidovorax sp. JS42 tartrate dehydrogenase YP_985429.1 1177132 D 232721 CDS YP_985430.1 121593534 4671202 1178289..1179266 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 1179266 4671202 Ajs_1121 Acidovorax sp. JS42 hypothetical protein YP_985430.1 1178289 D 232721 CDS YP_985431.1 121593535 4671615 1179320..1180642 1 NC_008782.1 PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase; hydroxypyruvate reductase 1180642 4671615 Ajs_1122 Acidovorax sp. JS42 hydroxypyruvate reductase YP_985431.1 1179320 D 232721 CDS YP_985432.1 121593536 4671190 1180965..1181315 1 NC_008782.1 PFAM: Transthyretin; KEGG: pol:Bpro_1426 transthyretin; transthyretin 1181315 4671190 Ajs_1123 Acidovorax sp. JS42 transthyretin YP_985432.1 1180965 D 232721 CDS YP_985433.1 121593537 4671635 complement(1181501..1181974) 1 NC_008782.1 KEGG: pol:Bpro_1428 hypothetical protein; hypothetical protein 1181974 4671635 Ajs_1124 Acidovorax sp. JS42 hypothetical protein YP_985433.1 1181501 R 232721 CDS YP_985434.1 121593538 4671349 1182072..1182959 1 NC_008782.1 PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182; hypothetical protein 1182959 4671349 Ajs_1125 Acidovorax sp. JS42 hypothetical protein YP_985434.1 1182072 D 232721 CDS YP_985435.1 121593539 4671673 complement(1183033..1184490) 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase; aldehyde dehydrogenase 1184490 4671673 Ajs_1126 Acidovorax sp. JS42 aldehyde dehydrogenase YP_985435.1 1183033 R 232721 CDS YP_985436.1 121593540 4671682 1184499..1185296 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein; GntR family transcriptional regulator 1185296 4671682 Ajs_1127 Acidovorax sp. JS42 GntR family transcriptional regulator YP_985436.1 1184499 D 232721 CDS YP_985437.1 121593541 4671707 1185485..1186690 1 NC_008782.1 PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein; hypothetical protein 1186690 4671707 Ajs_1128 Acidovorax sp. JS42 hypothetical protein YP_985437.1 1185485 D 232721 CDS YP_985438.1 121593542 4671716 1186724..1188007 1 NC_008782.1 Catalyzes the deamination of guanine; guanine deaminase 1188007 4671716 Ajs_1129 Acidovorax sp. JS42 guanine deaminase YP_985438.1 1186724 D 232721 CDS YP_985439.1 121593543 4671723 1188098..1188664 1 NC_008782.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1188664 dcd 4671723 dcd Acidovorax sp. JS42 deoxycytidine triphosphate deaminase YP_985439.1 1188098 D 232721 CDS YP_985440.1 121593544 4671768 1189146..1190009 1 NC_008782.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: pol:Bpro_1515 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 1190009 4671768 Ajs_1131 Acidovorax sp. JS42 hypothetical protein YP_985440.1 1189146 D 232721 CDS YP_985441.1 121593545 4671779 1190125..1191579 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 1191579 4671779 Ajs_1132 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_985441.1 1190125 D 232721 CDS YP_985442.1 121593546 4671808 complement(1191673..1192287) 1 NC_008782.1 KEGG: rfr:Rfer_3207 hypothetical protein; hypothetical protein 1192287 4671808 Ajs_1133 Acidovorax sp. JS42 hypothetical protein YP_985442.1 1191673 R 232721 CDS YP_985443.1 121593547 4671811 complement(1192352..1192900) 1 NC_008782.1 PFAM: NosL family protein; KEGG: tbd:Tbd_1394 putative lipoprotein involved in nitrous oxide reduction; NosL family protein 1192900 4671811 Ajs_1134 Acidovorax sp. JS42 NosL family protein YP_985443.1 1192352 R 232721 CDS YP_985444.1 121593548 4671815 complement(1192897..1193712) 1 NC_008782.1 PFAM: ABC-2 type transporter; KEGG: eba:ebA6266 probable transmembrane protein; ABC-2 type transporter 1193712 4671815 Ajs_1135 Acidovorax sp. JS42 ABC-2 type transporter YP_985444.1 1192897 R 232721 CDS YP_985445.1 121593549 4671942 complement(1193733..1194665) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1392 ABC transporter ATPase; ABC transporter-like protein 1194665 4671942 Ajs_1136 Acidovorax sp. JS42 ABC transporter-like protein YP_985445.1 1193733 R 232721 CDS YP_985446.1 121593550 4674297 complement(1194640..1195911) 1 NC_008782.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: tbd:Tbd_1391 nitrous oxidase accessory protein; periplasmic copper-binding protein 1195911 4674297 Ajs_1137 Acidovorax sp. JS42 periplasmic copper-binding protein YP_985446.1 1194640 R 232721 CDS YP_985447.1 121593551 4674326 complement(1195908..1198529) 1 NC_008782.1 PFAM: FMN-binding domain protein; KEGG: rfr:Rfer_3198 FMN-binding; FMN-binding domain-containing protein 1198529 4674326 Ajs_1138 Acidovorax sp. JS42 FMN-binding domain-containing protein YP_985447.1 1195908 R 232721 CDS YP_985448.1 121593552 4674364 complement(1198631..1200571) 1 NC_008782.1 reduces nitrous oxide to nitrogen; nitrous-oxide reductase 1200571 4674364 Ajs_1139 Acidovorax sp. JS42 nitrous-oxide reductase YP_985448.1 1198631 R 232721 CDS YP_985449.1 121593553 4674330 complement(1200583..1200948) 1 NC_008782.1 KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein 1200948 4674330 Ajs_1140 Acidovorax sp. JS42 hypothetical protein YP_985449.1 1200583 R 232721 CDS YP_985450.1 121593554 4671932 1201125..1201604 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: tbd:Tbd_1398 putative cytochrome c-type protein; class I cytochrome c 1201604 4671932 Ajs_1141 Acidovorax sp. JS42 class I cytochrome c YP_985450.1 1201125 D 232721 CDS YP_985451.1 121593555 4671839 1201623..1202711 1 NC_008782.1 PFAM: ApbE family lipoprotein; KEGG: rme:Rmet_4919 ApbE-like lipoprotein; ApbE family lipoprotein 1202711 4671839 Ajs_1142 Acidovorax sp. JS42 ApbE family lipoprotein YP_985451.1 1201623 D 232721 CDS YP_985452.1 121593556 4671846 complement(1202818..1203663) 1 NC_008782.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1203663 apaH 4671846 apaH Acidovorax sp. JS42 diadenosine tetraphosphatase YP_985452.1 1202818 R 232721 CDS YP_985453.1 121593557 4672545 1204003..1204299 1 NC_008782.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 1204299 4672545 Ajs_1144 Acidovorax sp. JS42 histone family protein nucleoid-structuring protein H-NS YP_985453.1 1204003 D 232721 CDS YP_985454.1 121593558 4672476 1204697..1207615 1 NC_008782.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1207615 4672476 Ajs_1145 Acidovorax sp. JS42 aconitate hydratase YP_985454.1 1204697 D 232721 CDS YP_985455.1 121593559 4671946 1207742..1208986 1 NC_008782.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase; FAD-binding monooxygenase 1208986 4671946 Ajs_1146 Acidovorax sp. JS42 FAD-binding monooxygenase YP_985455.1 1207742 D 232721 CDS YP_985456.1 121593560 4671912 complement(1209074..1210336) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein; major facilitator superfamily transporter 1210336 4671912 Ajs_1147 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985456.1 1209074 R 232721 CDS YP_985457.1 121593561 4671918 complement(1210396..1211283) 1 NC_008782.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: rso:RSc1352 probable two-component response regulator transcription regulator protein; response regulator receiver protein 1211283 4671918 Ajs_1148 Acidovorax sp. JS42 response regulator receiver protein YP_985457.1 1210396 R 232721 CDS YP_985458.1 121593562 4671888 1211304..1212266 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1212266 4671888 Ajs_1149 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_985458.1 1211304 D 232721 CDS YP_985459.1 121593563 4671896 complement(1212369..1213472) 1 NC_008782.1 PFAM: histidine kinase internal region; KEGG: rme:Rmet_1380 histidine kinase internal region; histidine kinase 1213472 4671896 Ajs_1150 Acidovorax sp. JS42 histidine kinase YP_985459.1 1212369 R 232721 CDS YP_985460.1 121593564 4671873 complement(1213516..1213836) 1 NC_008782.1 KEGG: rso:RSc1350 probable transmembrane protein; hypothetical protein 1213836 4671873 Ajs_1151 Acidovorax sp. JS42 hypothetical protein YP_985460.1 1213516 R 232721 CDS YP_985461.1 121593565 4672107 1214068..1214892 1 NC_008782.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1214892 4672107 Ajs_1152 Acidovorax sp. JS42 undecaprenyl pyrophosphate phosphatase YP_985461.1 1214068 D 232721 CDS YP_985462.1 121593566 4671866 complement(1214898..1216688) 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: rfr:Rfer_3471 diguanylate cyclase; diguanylate cyclase 1216688 4671866 Ajs_1153 Acidovorax sp. JS42 diguanylate cyclase YP_985462.1 1214898 R 232721 CDS YP_985463.1 121593567 4671868 complement(1216797..1217612) 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_1830 alpha/beta hydrolase; alpha/beta hydrolase fold protein 1217612 4671868 Ajs_1154 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_985463.1 1216797 R 232721 CDS YP_985464.1 121593568 4671849 complement(1217621..1218448) 1 NC_008782.1 PFAM: 20S proteasome, A and B subunits; KEGG: rfr:Rfer_1831 hypothetical protein; 20S proteasome subunits A/B 1218448 4671849 Ajs_1155 Acidovorax sp. JS42 20S proteasome subunits A/B YP_985464.1 1217621 R 232721 CDS YP_985465.1 121593569 4671860 complement(1221339..1222943) 1 NC_008782.1 PFAM: Alkaline phosphatase; KEGG: rfr:Rfer_1326 alkaline phosphatase; alkaline phosphatase 1222943 4671860 Ajs_1157 Acidovorax sp. JS42 alkaline phosphatase YP_985465.1 1221339 R 232721 CDS YP_985466.1 121593570 4671854 complement(1222958..1224481) 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase; diguanylate cyclase 1224481 4671854 Ajs_1158 Acidovorax sp. JS42 diguanylate cyclase YP_985466.1 1222958 R 232721 CDS YP_985467.1 121593571 4671844 complement(1224575..1225549) 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1225549 4671844 Ajs_1159 Acidovorax sp. JS42 alcohol dehydrogenase YP_985467.1 1224575 R 232721 CDS YP_985468.1 121593572 4672135 1225626..1226468 1 NC_008782.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1226468 surE 4672135 surE Acidovorax sp. JS42 stationary phase survival protein SurE YP_985468.1 1225626 D 232721 CDS YP_985469.1 121593573 4672147 1226468..1227238 1 NC_008782.1 KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1227238 4672147 Ajs_1161 Acidovorax sp. JS42 protein-L-isoaspartate O-methyltransferase YP_985469.1 1226468 D 232721 CDS YP_985470.1 121593574 4672153 1227250..1228161 1 NC_008782.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rfr:Rfer_2780 peptidase M23B; peptidase M23B 1228161 4672153 Ajs_1162 Acidovorax sp. JS42 peptidase M23B YP_985470.1 1227250 D 232721 CDS YP_985471.1 121593575 4672186 1228176..1229180 1 NC_008782.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2314 pseudouridine synthase, RluD; ribosomal large subunit pseudouridine synthase D 1229180 4672186 Ajs_1163 Acidovorax sp. JS42 ribosomal large subunit pseudouridine synthase D YP_985471.1 1228176 D 232721 CDS YP_985472.1 121593576 4672199 1229331..1230035 1 NC_008782.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rfr:Rfer_2313 putative transcriptional regulator; condensin subunit ScpB 1230035 4672199 Ajs_1164 Acidovorax sp. JS42 condensin subunit ScpB YP_985472.1 1229331 D 232721 CDS YP_985473.1 121593577 4672225 1230032..1231375 1 NC_008782.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2312 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase B 1231375 4672225 Ajs_1165 Acidovorax sp. JS42 ribosomal large subunit pseudouridine synthase B YP_985473.1 1230032 D 232721 CDS YP_985474.1 121593578 4672269 1231452..1231877 1 NC_008782.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1231877 ndk 4672269 ndk Acidovorax sp. JS42 nucleoside diphosphate kinase YP_985474.1 1231452 D 232721 CDS YP_985475.1 121593579 4672272 1231962..1233086 1 NC_008782.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rfr:Rfer_2310 hypothetical protein; radical SAM protein 1233086 4672272 Ajs_1167 Acidovorax sp. JS42 radical SAM protein YP_985475.1 1231962 D 232721 CDS YP_985476.1 121593580 4672283 1233118..1233945 1 NC_008782.1 KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1233945 4672283 Ajs_1168 Acidovorax sp. JS42 type IV pilus biogenesis/stability protein PilW YP_985476.1 1233118 D 232721 CDS YP_985477.1 121593581 4672295 1233980..1234906 1 NC_008782.1 KEGG: pol:Bpro_2609 hypothetical protein; hypothetical protein 1234906 4672295 Ajs_1169 Acidovorax sp. JS42 hypothetical protein YP_985477.1 1233980 D 232721 CDS YP_985478.1 121593582 4672307 1234907..1236184 1 NC_008782.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1236184 ispG 4672307 ispG Acidovorax sp. JS42 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_985478.1 1234907 D 232721 CDS YP_985479.1 121593583 4672361 1236282..1237571 1 NC_008782.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1237571 hisS 4672361 hisS Acidovorax sp. JS42 histidyl-tRNA synthetase YP_985479.1 1236282 D 232721 CDS YP_985480.1 121593584 4672382 1237585..1238262 1 NC_008782.1 KEGG: pol:Bpro_2606 hypothetical protein; hypothetical protein 1238262 4672382 Ajs_1172 Acidovorax sp. JS42 hypothetical protein YP_985480.1 1237585 D 232721 CDS YP_985481.1 121593585 4672387 1238259..1239410 1 NC_008782.1 PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1239410 4672387 Ajs_1173 Acidovorax sp. JS42 Pyrrolo-quinoline quinone YP_985481.1 1238259 D 232721 CDS YP_985482.1 121593586 4672393 1239430..1240773 1 NC_008782.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1240773 engA 4672393 engA Acidovorax sp. JS42 GTP-binding protein EngA YP_985482.1 1239430 D 232721 CDS YP_985483.1 121593587 4672396 1240851..1241102 1 NC_008782.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rfr:Rfer_2302 host factor Hfq; RNA chaperone Hfq 1241102 4672396 Ajs_1175 Acidovorax sp. JS42 RNA chaperone Hfq YP_985483.1 1240851 D 232721 CDS YP_985484.1 121593588 4672399 1241166..1242344 1 NC_008782.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_2301 small GTP-binding protein domain; small GTP-binding protein 1242344 4672399 Ajs_1176 Acidovorax sp. JS42 small GTP-binding protein YP_985484.1 1241166 D 232721 CDS YP_985485.1 121593589 4672403 1242396..1243751 1 NC_008782.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2300 HflK protein; HflK protein 1243751 4672403 Ajs_1177 Acidovorax sp. JS42 HflK protein YP_985485.1 1242396 D 232721 CDS YP_985486.1 121593590 4672414 1243761..1244666 1 NC_008782.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2299 HflC protein; HflC protein 1244666 4672414 Ajs_1178 Acidovorax sp. JS42 HflC protein YP_985486.1 1243761 D 232721 CDS YP_985487.1 121593591 4672421 1244696..1244875 1 NC_008782.1 KEGG: rfr:Rfer_2298 hypothetical protein; hypothetical protein 1244875 4672421 Ajs_1179 Acidovorax sp. JS42 hypothetical protein YP_985487.1 1244696 D 232721 CDS YP_985488.1 121593592 4672426 1244951..1246099 1 NC_008782.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rfr:Rfer_2297 tRNA synthetase, class II (G, H, P and S); class II tRNA synthetase 1246099 4672426 Ajs_1180 Acidovorax sp. JS42 class II tRNA synthetase YP_985488.1 1244951 D 232721 CDS YP_985489.1 121593593 4672451 1246129..1247505 1 NC_008782.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1247505 4672451 Ajs_1181 Acidovorax sp. JS42 adenylosuccinate synthetase YP_985489.1 1246129 D 232721 CDS YP_985490.1 121593594 4672453 1247577..1248101 1 NC_008782.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase; phosphoribosyltransferase 1248101 4672453 Ajs_1182 Acidovorax sp. JS42 phosphoribosyltransferase YP_985490.1 1247577 D 232721 CDS YP_985491.1 121593595 4672596 1253890..1254627 1 NC_008782.1 PFAM: pseudouridine synthase; KEGG: rfr:Rfer_2976 pseudouridine synthase, Rsu; ribosomal small subunit pseudouridine synthase A 1254627 4672596 Ajs_1183 Acidovorax sp. JS42 ribosomal small subunit pseudouridine synthase A YP_985491.1 1253890 D 232721 CDS YP_985492.1 121593596 4672586 1254787..1255761 1 NC_008782.1 KEGG: pol:Bpro_1802 hypothetical protein; hypothetical protein 1255761 4672586 Ajs_1184 Acidovorax sp. JS42 hypothetical protein YP_985492.1 1254787 D 232721 CDS YP_985493.1 121593597 4672568 1255748..1256587 1 NC_008782.1 PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase; polysaccharide deacetylase 1256587 4672568 Ajs_1185 Acidovorax sp. JS42 polysaccharide deacetylase YP_985493.1 1255748 D 232721 CDS YP_985494.1 121593598 4672569 1256638..1257636 1 NC_008782.1 KEGG: pol:Bpro_1804 hypothetical protein; hypothetical protein 1257636 4672569 Ajs_1186 Acidovorax sp. JS42 hypothetical protein YP_985494.1 1256638 D 232721 CDS YP_985495.1 121593599 4672567 1257652..1258554 1 NC_008782.1 KEGG: rfr:Rfer_2977 putative transmembrane protein; hypothetical protein 1258554 4672567 Ajs_1187 Acidovorax sp. JS42 hypothetical protein YP_985495.1 1257652 D 232721 CDS YP_985496.1 121593600 4672573 1258551..1259372 1 NC_008782.1 PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain; molybdopterin-binding domain-containing protein 1259372 4672573 Ajs_1188 Acidovorax sp. JS42 molybdopterin-binding domain-containing protein YP_985496.1 1258551 D 232721 CDS YP_985497.1 121593601 4672561 1259529..1260944 1 NC_008782.1 KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase 1260944 4672561 Ajs_1189 Acidovorax sp. JS42 L-glutamine synthetase YP_985497.1 1259529 D 232721 CDS YP_985498.1 121593602 4672551 1261151..1261654 1 NC_008782.1 KEGG: rfr:Rfer_2980 conserved hypothetical signal peptide protein; putative signal peptide protein 1261654 4672551 Ajs_1190 Acidovorax sp. JS42 putative signal peptide protein YP_985498.1 1261151 D 232721 CDS YP_985499.1 121593603 4672560 1261671..1262759 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase NtrB 1262759 4672560 Ajs_1191 Acidovorax sp. JS42 signal transduction histidine kinase NtrB YP_985499.1 1261671 D 232721 CDS YP_985500.1 121593604 4672541 1262811..1264346 1 NC_008782.1 KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 1264346 4672541 Ajs_1192 Acidovorax sp. JS42 nitrogen metabolism transcriptional regulator NtrC YP_985500.1 1262811 D 232721 CDS YP_985501.1 121593605 4672548 1264528..1265481 1 NC_008782.1 KEGG: par:Psyc_1331 hypothetical protein; hypothetical protein 1265481 4672548 Ajs_1193 Acidovorax sp. JS42 hypothetical protein YP_985501.1 1264528 D 232721 CDS YP_985502.1 121593606 4672511 complement(1265522..1266298) 1 NC_008782.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth); exodeoxyribonuclease III Xth 1266298 4672511 Ajs_1194 Acidovorax sp. JS42 exodeoxyribonuclease III Xth YP_985502.1 1265522 R 232721 CDS YP_985503.1 121593607 4672549 complement(1266369..1266863) 1 NC_008782.1 PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase; dihydrofolate reductase 1266863 4672549 Ajs_1195 Acidovorax sp. JS42 dihydrofolate reductase YP_985503.1 1266369 R 232721 CDS YP_985504.1 121593608 4672543 complement(1266866..1267561) 1 NC_008782.1 KEGG: net:Neut_1890 conserved hypothetical protein; hypothetical protein 1267561 4672543 Ajs_1196 Acidovorax sp. JS42 hypothetical protein YP_985504.1 1266866 R 232721 CDS YP_985505.1 121593609 4672547 complement(1267599..1268432) 1 NC_008782.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1268432 thyA 4672547 thyA Acidovorax sp. JS42 thymidylate synthase YP_985505.1 1267599 R 232721 CDS YP_985506.1 121593610 4672539 complement(1268485..1269909) 1 NC_008782.1 PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 1269909 4672539 Ajs_1198 Acidovorax sp. JS42 FAD linked oxidase domain-containing protein YP_985506.1 1268485 R 232721 CDS YP_985507.1 121593611 4672510 complement(1269951..1270367) 1 NC_008782.1 KEGG: pol:Bpro_1829 membrane protein-like; membrane protein 1270367 4672510 Ajs_1199 Acidovorax sp. JS42 membrane protein YP_985507.1 1269951 R 232721 CDS YP_985508.1 121593612 4672519 1270389..1271678 1 NC_008782.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative; putative ribonuclease BN 1271678 4672519 Ajs_1200 Acidovorax sp. JS42 putative ribonuclease BN YP_985508.1 1270389 D 232721 CDS YP_985509.1 121593613 4672509 complement(1271703..1273007) 1 NC_008782.1 PFAM: amine oxidase; KEGG: rfr:Rfer_1548 amine oxidase; amine oxidase 1273007 4672509 Ajs_1201 Acidovorax sp. JS42 amine oxidase YP_985509.1 1271703 R 232721 CDS YP_985510.1 121593614 4672489 complement(1273004..1273843) 1 NC_008782.1 PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase; farnesyl-diphosphate farnesyltransferase 1273843 4672489 Ajs_1202 Acidovorax sp. JS42 farnesyl-diphosphate farnesyltransferase YP_985510.1 1273004 R 232721 CDS YP_985511.1 121593615 4672827 1273991..1274881 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: pol:Bpro_2244 metallophosphoesterase; metallophosphoesterase 1274881 4672827 Ajs_1203 Acidovorax sp. JS42 metallophosphoesterase YP_985511.1 1273991 D 232721 CDS YP_985512.1 121593616 4671988 1274887..1276053 1 NC_008782.1 KEGG: eba:ebA5591 hypothetical protein; monogalactosyldiacylglycerol synthase 1276053 4671988 Ajs_1204 Acidovorax sp. JS42 monogalactosyldiacylglycerol synthase YP_985512.1 1274887 D 232721 CDS YP_985513.1 121593617 4671989 complement(1276139..1277029) 1 NC_008782.1 PFAM: Squalene/phytoene synthase; KEGG: rfr:Rfer_1550 squalene/phytoene synthase; squalene/phytoene synthase 1277029 4671989 Ajs_1205 Acidovorax sp. JS42 squalene/phytoene synthase YP_985513.1 1276139 R 232721 CDS YP_985514.1 121593618 4671994 1277117..1278274 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_1551 secretion protein HlyD; RND family efflux transporter MFP subunit 1278274 4671994 Ajs_1206 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_985514.1 1277117 D 232721 CDS YP_985515.1 121593619 4672472 1278381..1281530 1 NC_008782.1 PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein; acriflavin resistance protein 1281530 4672472 Ajs_1207 Acidovorax sp. JS42 acriflavin resistance protein YP_985515.1 1278381 D 232721 CDS YP_985516.1 121593620 4672882 1281785..1283095 1 NC_008782.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1283095 tig 4672882 tig Acidovorax sp. JS42 trigger factor YP_985516.1 1281785 D 232721 CDS YP_985517.1 121593621 4672936 1283219..1283827 1 NC_008782.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1283827 clpP 4672936 clpP Acidovorax sp. JS42 ATP-dependent Clp protease proteolytic subunit YP_985517.1 1283219 D 232721 CDS YP_985518.1 121593622 4672963 1283925..1285190 1 NC_008782.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1285190 clpX 4672963 clpX Acidovorax sp. JS42 ATP-dependent protease ATP-binding subunit ClpX YP_985518.1 1283925 D 232721 CDS YP_985519.1 121593623 4672970 1285330..1287750 1 NC_008782.1 KEGG: rfr:Rfer_1556 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Lon-A peptidase 1287750 4672970 Ajs_1211 Acidovorax sp. JS42 Lon-A peptidase YP_985519.1 1285330 D 232721 CDS YP_985520.1 121593624 4672733 1288148..1289383 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: xcv:XCV2261 phage-related integrase; phage integrase family protein 1289383 4672733 Ajs_1213 Acidovorax sp. JS42 phage integrase family protein YP_985520.1 1288148 D 232721 CDS YP_985521.1 121593625 4672735 1289444..1290976 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 1290976 4672735 Ajs_1214 Acidovorax sp. JS42 integrase catalytic subunit YP_985521.1 1289444 D 232721 CDS YP_985522.1 121593626 4673047 1290966..1291787 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1291787 4673047 Ajs_1215 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985522.1 1290966 D 232721 CDS YP_985523.1 121593627 4673062 1291835..1292470 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1292470 4673062 Ajs_1216 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985523.1 1291835 D 232721 CDS YP_985524.1 121593628 4673077 1294231..1295220 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sco:SCO2329 transcriptional regulator; transcriptional regulator 1295220 4673077 Ajs_1219 Acidovorax sp. JS42 transcriptional regulator YP_985524.1 1294231 D 232721 CDS YP_985525.1 121593629 4674644 complement(1295245..1295880) 1 NC_008782.1 PFAM: LysR, substrate-binding; KEGG: xfa:XF1719 hypothetical protein; LysR family transcriptional regulator 1295880 4674644 Ajs_1220 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985525.1 1295245 R 232721 CDS YP_985526.1 121593630 4674556 1296054..1296671 1 NC_008782.1 KEGG: mag:amb3764 hypothetical protein; hypothetical protein 1296671 4674556 Ajs_1221 Acidovorax sp. JS42 hypothetical protein YP_985526.1 1296054 D 232721 CDS YP_985527.1 121593631 4674676 1296668..1298338 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 1298338 4674676 Ajs_1222 Acidovorax sp. JS42 integrase catalytic subunit YP_985527.1 1296668 D 232721 CDS YP_985528.1 121593632 4674655 1298335..1299231 1 NC_008782.1 PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 1299231 4674655 Ajs_1223 Acidovorax sp. JS42 TniB family protein YP_985528.1 1298335 D 232721 CDS YP_985529.1 121593633 4674633 1299303..1300721 1 NC_008782.1 KEGG: mag:amb3760 hypothetical protein; hypothetical protein 1300721 4674633 Ajs_1224 Acidovorax sp. JS42 hypothetical protein YP_985529.1 1299303 D 232721 CDS YP_985530.1 121593634 4674505 1301445..1302671 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 1302671 4674505 Ajs_1225 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_985530.1 1301445 D 232721 CDS YP_985531.1 121593635 4673134 1302933..1304159 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1304159 4673134 Ajs_1226 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_985531.1 1302933 D 232721 CDS YP_985532.1 121593636 4673249 complement(1305583..1306485) 1 NC_008782.1 PFAM: LysR, substrate-binding; KEGG: bxe:Bxe_A1136 transcriptional regulator, LysR family; LysR family transcriptional regulator 1306485 4673249 Ajs_1229 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985532.1 1305583 R 232721 CDS YP_985533.1 121593637 4673250 complement(1306498..1307586) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 1307586 4673250 Ajs_1230 Acidovorax sp. JS42 transposase, IS4 family protein YP_985533.1 1306498 R 232721 CDS YP_985534.1 121593638 4673863 complement(1307658..1307798) 1 NC_008782.1 KEGG: xfa:XF1722 hypothetical protein; hypothetical protein 1307798 4673863 Ajs_1231 Acidovorax sp. JS42 hypothetical protein YP_985534.1 1307658 R 232721 CDS YP_985535.1 121593639 4673885 complement(1308007..1311126) 1 NC_008782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pfo:Pfl_2396 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1311126 4673885 Ajs_1232 Acidovorax sp. JS42 CzcA family heavy metal efflux protein YP_985535.1 1308007 R 232721 CDS YP_985536.1 121593640 4673896 complement(1311369..1312349) 1 NC_008782.1 PFAM: copper resistance B precursor; KEGG: rso:RSp0657 probable copper resistance protein B; copper resistance B 1312349 4673896 Ajs_1234 Acidovorax sp. JS42 copper resistance B YP_985536.1 1311369 R 232721 CDS YP_985537.1 121593641 4673849 complement(1312375..1314267) 1 NC_008782.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: net:Neut_0021 copper-resistance protein, CopA family protein; CopA family copper resistance protein 1314267 4673849 Ajs_1235 Acidovorax sp. JS42 CopA family copper resistance protein YP_985537.1 1312375 R 232721 CDS YP_985538.1 121593642 4673859 1314511..1315170 1 NC_008782.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: net:Neut_0018 two component heavy metal response transcriptional regulator, winged helix family protein; two component heavy metal response transcriptional regulator 1315170 4673859 Ajs_1236 Acidovorax sp. JS42 two component heavy metal response transcriptional regulator YP_985538.1 1314511 D 232721 CDS YP_985539.1 121593643 4673851 complement(1315520..1316680) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0741 putative transposase IS30; integrase catalytic subunit 1316680 4673851 Ajs_1238 Acidovorax sp. JS42 integrase catalytic subunit YP_985539.1 1315520 R 232721 CDS YP_985540.1 121593644 4673901 1316791..1317159 1 NC_008782.1 KEGG: pol:Bpro_2475 integrase, catalytic region; integrase catalytic subunit 1317159 4673901 Ajs_1239 Acidovorax sp. JS42 integrase catalytic subunit YP_985540.1 1316791 D 232721 CDS YP_985541.1 121593645 4673909 complement(1317323..1319257) 1 NC_008782.1 PFAM: cytochrome c, class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1; iron permease FTR1 1319257 4673909 Ajs_1240 Acidovorax sp. JS42 iron permease FTR1 YP_985541.1 1317323 R 232721 CDS YP_985542.1 121593646 4673913 complement(1319385..1319819) 1 NC_008782.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_5946 transcriptional regulator, MerR family; MerR family transcriptional regulator 1319819 4673913 Ajs_1241 Acidovorax sp. JS42 MerR family transcriptional regulator YP_985542.1 1319385 R 232721 CDS YP_985543.1 121593647 4673910 1319914..1322313 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1322313 4673910 Ajs_1242 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985543.1 1319914 D 232721 CDS YP_985544.1 121593648 4673920 1322310..1323404 1 NC_008782.1 TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: rme:Rmet_5948 lipoprotein signal peptidase; signal peptidase II 1323404 4673920 Ajs_1243 Acidovorax sp. JS42 signal peptidase II YP_985544.1 1322310 D 232721 CDS YP_985545.1 121593649 4673930 complement(1323801..1325684) 1 NC_008782.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein; relaxase 1325684 4673930 Ajs_1245 Acidovorax sp. JS42 relaxase YP_985545.1 1323801 R 232721 CDS YP_985546.1 121593650 4673939 1325914..1326300 1 NC_008782.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bxe:Bxe_A1174 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1326300 4673939 Ajs_1246 Acidovorax sp. JS42 AbrB family transcriptional regulator YP_985546.1 1325914 D 232721 CDS YP_985547.1 121593651 4673941 1326300..1326758 1 NC_008782.1 KEGG: bxe:Bxe_A1175 hypothetical protein; hypothetical protein 1326758 4673941 Ajs_1247 Acidovorax sp. JS42 hypothetical protein YP_985547.1 1326300 D 232721 CDS YP_985548.1 121593652 4673946 1326785..1327162 1 NC_008782.1 KEGG: bxe:Bxe_A1176 hypothetical protein; hypothetical protein 1327162 4673946 Ajs_1248 Acidovorax sp. JS42 hypothetical protein YP_985548.1 1326785 D 232721 CDS YP_985549.1 121593653 4673923 complement(1327178..1328695) 1 NC_008782.1 KEGG: bxe:Bxe_A1177 hypothetical protein; hypothetical protein 1328695 4673923 Ajs_1249 Acidovorax sp. JS42 hypothetical protein YP_985549.1 1327178 R 232721 CDS YP_985550.1 121593654 4673950 complement(1328710..1329069) 1 NC_008782.1 KEGG: rme:Rmet_2359 hypothetical protein; hypothetical protein 1329069 4673950 Ajs_1250 Acidovorax sp. JS42 hypothetical protein YP_985550.1 1328710 R 232721 CDS YP_985551.1 121593655 4673944 complement(1329066..1330460) 1 NC_008782.1 KEGG: rme:Rmet_2358 hypothetical protein; hypothetical protein 1330460 4673944 Ajs_1251 Acidovorax sp. JS42 hypothetical protein YP_985551.1 1329066 R 232721 CDS YP_985552.1 121593656 4673969 complement(1330470..1331417) 1 NC_008782.1 PFAM: protein of unknown function DUF1527; KEGG: rme:Rmet_2357 protein of unknown function DUF1527; hypothetical protein 1331417 4673969 Ajs_1252 Acidovorax sp. JS42 hypothetical protein YP_985552.1 1330470 R 232721 CDS YP_985553.1 121593657 4673976 complement(1331414..1331860) 1 NC_008782.1 PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525; hypothetical protein 1331860 4673976 Ajs_1253 Acidovorax sp. JS42 hypothetical protein YP_985553.1 1331414 R 232721 CDS YP_985554.1 121593658 4673961 complement(1332024..1332518) 1 NC_008782.1 PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC; DNA repair protein RadC 1332518 4673961 Ajs_1254 Acidovorax sp. JS42 DNA repair protein RadC YP_985554.1 1332024 R 232721 CDS YP_985555.1 121593659 4674038 complement(1332698..1333462) 1 NC_008782.1 KEGG: rme:Rmet_2354 hypothetical protein; hypothetical protein 1333462 4674038 Ajs_1255 Acidovorax sp. JS42 hypothetical protein YP_985555.1 1332698 R 232721 CDS YP_985556.1 121593660 4673257 complement(1333487..1336378) 1 NC_008782.1 KEGG: rme:Rmet_2353 hypothetical protein; hypothetical protein 1336378 4673257 Ajs_1256 Acidovorax sp. JS42 hypothetical protein YP_985556.1 1333487 R 232721 CDS YP_985557.1 121593661 4673878 complement(1336378..1336827) 1 NC_008782.1 KEGG: rme:Rmet_2352 putative secreted protein; hypothetical protein 1336827 4673878 Ajs_1257 Acidovorax sp. JS42 hypothetical protein YP_985557.1 1336378 R 232721 CDS YP_985558.1 121593662 4673870 complement(1336808..1338238) 1 NC_008782.1 KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein 1338238 4673870 Ajs_1258 Acidovorax sp. JS42 hypothetical protein YP_985558.1 1336808 R 232721 CDS YP_985559.1 121593663 4673324 complement(1338228..1339136) 1 NC_008782.1 KEGG: rme:Rmet_2350 putative secreted protein; hypothetical protein 1339136 4673324 Ajs_1259 Acidovorax sp. JS42 hypothetical protein YP_985559.1 1338228 R 232721 CDS YP_985560.1 121593664 4673346 complement(1339133..1339825) 1 NC_008782.1 KEGG: rme:Rmet_2349 putative secreted protein; hypothetical protein 1339825 4673346 Ajs_1260 Acidovorax sp. JS42 hypothetical protein YP_985560.1 1339133 R 232721 CDS YP_985561.1 121593665 4673201 complement(1339822..1340220) 1 NC_008782.1 KEGG: rme:Rmet_2348 hypothetical protein; hypothetical protein 1340220 4673201 Ajs_1261 Acidovorax sp. JS42 hypothetical protein YP_985561.1 1339822 R 232721 CDS YP_985562.1 121593666 4673202 complement(1340232..1340591) 1 NC_008782.1 KEGG: rme:Rmet_2347 hypothetical protein; hypothetical protein 1340591 4673202 Ajs_1262 Acidovorax sp. JS42 hypothetical protein YP_985562.1 1340232 R 232721 CDS YP_985563.1 121593667 4673184 complement(1340608..1340841) 1 NC_008782.1 KEGG: bxe:Bxe_A1191 hypothetical protein; hypothetical protein 1340841 4673184 Ajs_1263 Acidovorax sp. JS42 hypothetical protein YP_985563.1 1340608 R 232721 CDS YP_985564.1 121593668 4673183 complement(1340838..1341221) 1 NC_008782.1 KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein 1341221 4673183 Ajs_1264 Acidovorax sp. JS42 hypothetical protein YP_985564.1 1340838 R 232721 CDS YP_985565.1 121593669 4673171 1341425..1341895 1 NC_008782.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: rme:Rmet_2344 excisionase/Xis, DNA-binding; DNA-binding domain-containing protein 1341895 4673171 Ajs_1265 Acidovorax sp. JS42 DNA-binding domain-containing protein YP_985565.1 1341425 D 232721 CDS YP_985566.1 121593670 4673175 1341892..1342467 1 NC_008782.1 KEGG: rme:Rmet_2343 hypothetical protein; hypothetical protein 1342467 4673175 Ajs_1266 Acidovorax sp. JS42 hypothetical protein YP_985566.1 1341892 D 232721 CDS YP_985567.1 121593671 4673162 1342485..1343399 1 NC_008782.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region; ATPase central domain-containing protein 1343399 4673162 Ajs_1267 Acidovorax sp. JS42 ATPase central domain-containing protein YP_985567.1 1342485 D 232721 CDS YP_985568.1 121593672 4673164 1343396..1343866 1 NC_008782.1 KEGG: rpe:RPE_2468 hypothetical protein; hypothetical protein 1343866 4673164 Ajs_1268 Acidovorax sp. JS42 hypothetical protein YP_985568.1 1343396 D 232721 CDS YP_985569.1 121593673 4673376 1343863..1344363 1 NC_008782.1 KEGG: rme:Rmet_2341 hypothetical protein; hypothetical protein 1344363 4673376 Ajs_1269 Acidovorax sp. JS42 hypothetical protein YP_985569.1 1343863 D 232721 CDS YP_985570.1 121593674 4673141 1344363..1345265 1 NC_008782.1 KEGG: rme:Rmet_2340 hypothetical protein; hypothetical protein 1345265 4673141 Ajs_1270 Acidovorax sp. JS42 hypothetical protein YP_985570.1 1344363 D 232721 CDS YP_985571.1 121593675 4673147 1345304..1346029 1 NC_008782.1 KEGG: rme:Rmet_2339 hypothetical protein; hypothetical protein 1346029 4673147 Ajs_1271 Acidovorax sp. JS42 hypothetical protein YP_985571.1 1345304 D 232721 CDS YP_985572.1 121593676 4673135 1346039..1348663 1 NC_008782.1 KEGG: rme:Rmet_2338 hypothetical protein; hypothetical protein 1348663 4673135 Ajs_1272 Acidovorax sp. JS42 hypothetical protein YP_985572.1 1346039 D 232721 CDS YP_985573.1 121593677 4673142 complement(1348704..1349453) 1 NC_008782.1 KEGG: rme:Rmet_2337 hypothetical protein; hypothetical protein 1349453 4673142 Ajs_1273 Acidovorax sp. JS42 hypothetical protein YP_985573.1 1348704 R 232721 CDS YP_985574.1 121593678 4673136 complement(1349450..1351642) 1 NC_008782.1 KEGG: bxe:Bxe_A1195 hypothetical protein; hypothetical protein 1351642 4673136 Ajs_1274 Acidovorax sp. JS42 hypothetical protein YP_985574.1 1349450 R 232721 CDS YP_985575.1 121593679 4673110 complement(1351647..1352195) 1 NC_008782.1 KEGG: rme:Rmet_2335 putative secreted protein; hypothetical protein 1352195 4673110 Ajs_1275 Acidovorax sp. JS42 hypothetical protein YP_985575.1 1351647 R 232721 CDS YP_985576.1 121593680 4673100 complement(1352192..1352782) 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor; lytic transglycosylase catalytic subunit 1352782 4673100 Ajs_1276 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985576.1 1352192 R 232721 CDS YP_985577.1 121593681 4673389 complement(1352764..1353489) 1 NC_008782.1 KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein 1353489 4673389 Ajs_1277 Acidovorax sp. JS42 hypothetical protein YP_985577.1 1352764 R 232721 CDS YP_985578.1 121593682 4673117 complement(1353506..1354141) 1 NC_008782.1 KEGG: xcb:XC_2044 hypothetical protein; hypothetical protein 1354141 4673117 Ajs_1278 Acidovorax sp. JS42 hypothetical protein YP_985578.1 1353506 R 232721 CDS YP_985579.1 121593683 4672712 complement(1354138..1354704) 1 NC_008782.1 KEGG: xcv:XCV2382 putative secreted protein; hypothetical protein 1354704 4672712 Ajs_1279 Acidovorax sp. JS42 hypothetical protein YP_985579.1 1354138 R 232721 CDS YP_985580.1 121593684 4673403 1354831..1355193 1 NC_008782.1 SMART: regulatory protein, ArsR; KEGG: bbr:BB2784 putative transcriptional regulator; ArsR family transcriptional regulator 1355193 4673403 Ajs_1280 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_985580.1 1354831 D 232721 CDS YP_985581.1 121593685 4673106 1355196..1355690 1 NC_008782.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mes:Meso_4199 protein tyrosine phosphatase; protein tyrosine phosphatase 1355690 4673106 Ajs_1281 Acidovorax sp. JS42 protein tyrosine phosphatase YP_985581.1 1355196 D 232721 CDS YP_985582.1 121593686 4673098 1355701..1356777 1 NC_008782.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: net:Neut_2261 bile acid:sodium symporter; arsenical-resistance protein 1356777 4673098 Ajs_1282 Acidovorax sp. JS42 arsenical-resistance protein YP_985582.1 1355701 D 232721 CDS YP_985583.1 121593687 4672709 1356794..1357216 1 NC_008782.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bbr:BB2782 arsenate reductase; arsenate reductase 1357216 4672709 Ajs_1283 Acidovorax sp. JS42 arsenate reductase YP_985583.1 1356794 D 232721 CDS YP_985584.1 121593688 4673412 1357200..1357931 1 NC_008782.1 PFAM: NADPH-dependent FMN reductase; KEGG: bpa:BPP2717 putative NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1357931 4673412 Ajs_1284 Acidovorax sp. JS42 NADPH-dependent FMN reductase YP_985584.1 1357200 D 232721 CDS YP_985585.1 121593689 4673438 complement(1357990..1360269) 1 NC_008782.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rme:Rmet_2330 helicase-like protein; helicase domain-containing protein 1360269 4673438 Ajs_1285 Acidovorax sp. JS42 helicase domain-containing protein YP_985585.1 1357990 R 232721 CDS YP_985586.1 121593690 4673456 complement(1360406..1360711) 1 NC_008782.1 KEGG: rme:Rmet_2329 hypothetical protein; hypothetical protein 1360711 4673456 Ajs_1286 Acidovorax sp. JS42 hypothetical protein YP_985586.1 1360406 R 232721 CDS YP_985587.1 121593691 4673465 complement(1360801..1361121) 1 NC_008782.1 KEGG: xcv:XCV2388 hypothetical protein; hypothetical protein 1361121 4673465 Ajs_1287 Acidovorax sp. JS42 hypothetical protein YP_985587.1 1360801 R 232721 CDS YP_985588.1 121593692 4673506 complement(1361173..1362321) 1 NC_008782.1 KEGG: xcv:XCV2389 hypothetical protein; hypothetical protein 1362321 4673506 Ajs_1288 Acidovorax sp. JS42 hypothetical protein YP_985588.1 1361173 R 232721 CDS YP_985589.1 121593693 4673508 complement(1362347..1362994) 1 NC_008782.1 KEGG: xcv:XCV2390 hypothetical protein; hypothetical protein 1362994 4673508 Ajs_1289 Acidovorax sp. JS42 hypothetical protein YP_985589.1 1362347 R 232721 CDS YP_985590.1 121593694 4673525 complement(1363071..1363331) 1 NC_008782.1 KEGG: xcv:XCV2391 hypothetical protein; hypothetical protein 1363331 4673525 Ajs_1290 Acidovorax sp. JS42 hypothetical protein YP_985590.1 1363071 R 232721 CDS YP_985591.1 121593695 4673545 complement(1363348..1363755) 1 NC_008782.1 KEGG: xcv:XCV2392 hypothetical protein; hypothetical protein 1363755 4673545 Ajs_1291 Acidovorax sp. JS42 hypothetical protein YP_985591.1 1363348 R 232721 CDS YP_985592.1 121593696 4673549 complement(1363856..1364179) 1 NC_008782.1 KEGG: xcv:XCV2393 hypothetical protein; hypothetical protein 1364179 4673549 Ajs_1292 Acidovorax sp. JS42 hypothetical protein YP_985592.1 1363856 R 232721 CDS YP_985593.1 121593697 4673574 complement(1364272..1364961) 1 NC_008782.1 KEGG: rme:Rmet_2322 hypothetical protein; hypothetical protein 1364961 4673574 Ajs_1293 Acidovorax sp. JS42 hypothetical protein YP_985593.1 1364272 R 232721 CDS YP_985594.1 121593698 4673575 complement(1365018..1365947) 1 NC_008782.1 KEGG: rme:Rmet_2320 hypothetical protein; hypothetical protein 1365947 4673575 Ajs_1294 Acidovorax sp. JS42 hypothetical protein YP_985594.1 1365018 R 232721 CDS YP_985595.1 121593699 4673649 complement(1366850..1367110) 1 NC_008782.1 KEGG: rme:Rmet_2318 hypothetical protein; hypothetical protein 1367110 4673649 Ajs_1296 Acidovorax sp. JS42 hypothetical protein YP_985595.1 1366850 R 232721 CDS YP_985596.1 121593700 4673680 complement(1368196..1369884) 1 NC_008782.1 TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: mca:MCA1340 mercuric reductase; putative mercuric reductase 1369884 4673680 Ajs_1298 Acidovorax sp. JS42 putative mercuric reductase YP_985596.1 1368196 R 232721 CDS YP_985597.1 121593701 4673692 complement(1369895..1370182) 1 NC_008782.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_2314 mercuric transport protein periplasmic component; mercuric transport protein periplasmic component 1370182 4673692 Ajs_1299 Acidovorax sp. JS42 mercuric transport protein periplasmic component YP_985597.1 1369895 R 232721 CDS YP_985598.1 121593702 4673739 complement(1370195..1370545) 1 NC_008782.1 PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_2313 mercuric transport protein MerT; putative mercuric transport protein 1370545 4673739 Ajs_1300 Acidovorax sp. JS42 putative mercuric transport protein YP_985598.1 1370195 R 232721 CDS YP_985599.1 121593703 4673743 1370617..1371024 1 NC_008782.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_2312 transcriptional regulator, MerR family; MerR family transcriptional regulator 1371024 4673743 Ajs_1301 Acidovorax sp. JS42 MerR family transcriptional regulator YP_985599.1 1370617 D 232721 CDS YP_985600.1 121593704 4673744 complement(1371286..1372110) 1 NC_008782.1 KEGG: rme:Rmet_2311 hypothetical protein; hypothetical protein 1372110 4673744 Ajs_1302 Acidovorax sp. JS42 hypothetical protein YP_985600.1 1371286 R 232721 CDS YP_985601.1 121593705 4673747 complement(1372399..1372677) 1 NC_008782.1 KEGG: rme:Rmet_2310 hypothetical protein; hypothetical protein 1372677 4673747 Ajs_1303 Acidovorax sp. JS42 hypothetical protein YP_985601.1 1372399 R 232721 CDS YP_985602.1 121593706 4673754 complement(1372775..1373512) 1 NC_008782.1 KEGG: rme:Rmet_2309 hypothetical protein; hypothetical protein 1373512 4673754 Ajs_1304 Acidovorax sp. JS42 hypothetical protein YP_985602.1 1372775 R 232721 CDS YP_985603.1 121593707 4673758 complement(1373596..1374282) 1 NC_008782.1 KEGG: rme:Rmet_2308 hypothetical protein; hypothetical protein 1374282 4673758 Ajs_1305 Acidovorax sp. JS42 hypothetical protein YP_985603.1 1373596 R 232721 CDS YP_985604.1 121593708 4673765 complement(1374465..1374857) 1 NC_008782.1 KEGG: rme:Rmet_2307 hypothetical protein; hypothetical protein 1374857 4673765 Ajs_1306 Acidovorax sp. JS42 hypothetical protein YP_985604.1 1374465 R 232721 CDS YP_985605.1 121593709 4673821 complement(1375434..1376192) 1 NC_008782.1 KEGG: xfa:XF1773 hypothetical protein; hypothetical protein 1376192 4673821 Ajs_1308 Acidovorax sp. JS42 hypothetical protein YP_985605.1 1375434 R 232721 CDS YP_985606.1 121593710 4673314 complement(1376235..1377854) 1 NC_008782.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase; C-5 cytosine-specific DNA methylase 1377854 4673314 Ajs_1309 Acidovorax sp. JS42 C-5 cytosine-specific DNA methylase YP_985606.1 1376235 R 232721 CDS YP_985607.1 121593711 4673832 complement(1378380..1380392) 1 NC_008782.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1380392 4673832 Ajs_1311 Acidovorax sp. JS42 DNA topoisomerase III YP_985607.1 1378380 R 232721 CDS YP_985608.1 121593712 4673834 complement(1380669..1381121) 1 NC_008782.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1381121 4673834 Ajs_1312 Acidovorax sp. JS42 single-stranded DNA-binding protein YP_985608.1 1380669 R 232721 CDS YP_985609.1 121593713 4673907 complement(1381195..1381722) 1 NC_008782.1 KEGG: bxe:Bxe_A1225 putative integrase regulator R protein; putative integrase regulator R protein 1381722 4673907 Ajs_1313 Acidovorax sp. JS42 putative integrase regulator R protein YP_985609.1 1381195 R 232721 CDS YP_985610.1 121593714 4673966 complement(1381719..1382513) 1 NC_008782.1 KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein 1382513 4673966 Ajs_1314 Acidovorax sp. JS42 hypothetical protein YP_985610.1 1381719 R 232721 CDS YP_985611.1 121593715 4674141 complement(1382944..1384179) 1 NC_008782.1 KEGG: rme:Rmet_2294 hypothetical protein; hypothetical protein 1384179 4674141 Ajs_1315 Acidovorax sp. JS42 hypothetical protein YP_985611.1 1382944 R 232721 CDS YP_985612.1 121593716 4674123 complement(1384182..1384742) 1 NC_008782.1 KEGG: rme:Rmet_2293 hypothetical protein; hypothetical protein 1384742 4674123 Ajs_1316 Acidovorax sp. JS42 hypothetical protein YP_985612.1 1384182 R 232721 CDS YP_985613.1 121593717 4674108 complement(1384757..1386436) 1 NC_008782.1 KEGG: rme:Rmet_2292 hypothetical protein; hypothetical protein 1386436 4674108 Ajs_1317 Acidovorax sp. JS42 hypothetical protein YP_985613.1 1384757 R 232721 CDS YP_985614.1 121593718 4674101 complement(1386429..1386698) 1 NC_008782.1 KEGG: rme:Rmet_2291 hypothetical protein; hypothetical protein 1386698 4674101 Ajs_1318 Acidovorax sp. JS42 hypothetical protein YP_985614.1 1386429 R 232721 CDS YP_985615.1 121593719 4674065 complement(1386682..1387557) 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_2290 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1387557 4674065 Ajs_1319 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_985615.1 1386682 R 232721 CDS YP_985616.1 121593720 4674056 complement(1387600..1387812) 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_2289 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1387812 4674056 Ajs_1320 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_985616.1 1387600 R 232721 CDS YP_985617.1 121593721 4674068 complement(1387931..1388677) 1 NC_008782.1 KEGG: rme:Rmet_2288 hypothetical protein; hypothetical protein 1388677 4674068 Ajs_1321 Acidovorax sp. JS42 hypothetical protein YP_985617.1 1387931 R 232721 CDS YP_985618.1 121593722 4670573 1389128..1389628 1 NC_008782.1 PFAM: protein of unknown function DUF305; KEGG: rme:Rmet_2287 protein of unknown function DUF305; hypothetical protein 1389628 4670573 Ajs_1322 Acidovorax sp. JS42 hypothetical protein YP_985618.1 1389128 D 232721 CDS YP_985619.1 121593723 4674018 1389767..1392736 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 family protein 1392736 4674018 Ajs_1323 Acidovorax sp. JS42 transposase Tn3 family protein YP_985619.1 1389767 D 232721 CDS YP_985620.1 121593724 4674726 1392822..1393073 1 NC_008782.1 TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ccr:CC2985 hypothetical protein; CopG/Arc/MetJ family transcriptional regulator 1393073 4674726 Ajs_1324 Acidovorax sp. JS42 CopG/Arc/MetJ family transcriptional regulator YP_985620.1 1392822 D 232721 CDS YP_985621.1 121593725 4674713 complement(1393644..1393961) 1 NC_008782.1 PFAM: protein of unknown function UPF0060; KEGG: nmu:Nmul_A0351 hypothetical protein; hypothetical protein 1393961 4674713 Ajs_1326 Acidovorax sp. JS42 hypothetical protein YP_985621.1 1393644 R 232721 CDS YP_985622.1 121593726 4674709 complement(1393966..1394502) 1 NC_008782.1 hypothetical protein 1394502 4674709 Ajs_1327 Acidovorax sp. JS42 hypothetical protein YP_985622.1 1393966 R 232721 CDS YP_985623.1 121593727 4674699 complement(1394508..1394894) 1 NC_008782.1 KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein 1394894 4674699 Ajs_1328 Acidovorax sp. JS42 hypothetical protein YP_985623.1 1394508 R 232721 CDS YP_985624.1 121593728 4674689 complement(1394934..1398053) 1 NC_008782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1398053 4674689 Ajs_1329 Acidovorax sp. JS42 CzcA family heavy metal efflux protein YP_985624.1 1394934 R 232721 CDS YP_985625.1 121593729 4674702 complement(1398055..1399173) 1 NC_008782.1 KEGG: dar:Daro_2618 hypothetical protein; hypothetical protein 1399173 4674702 Ajs_1330 Acidovorax sp. JS42 hypothetical protein YP_985625.1 1398055 R 232721 CDS YP_985626.1 121593730 4674665 complement(1399170..1399730) 1 NC_008782.1 KEGG: dar:Daro_2619 hypothetical protein; hypothetical protein 1399730 4674665 Ajs_1331 Acidovorax sp. JS42 hypothetical protein YP_985626.1 1399170 R 232721 CDS YP_985627.1 121593731 4674661 complement(1399789..1401114) 1 NC_008782.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein; outer membrane efflux protein 1401114 4674661 Ajs_1332 Acidovorax sp. JS42 outer membrane efflux protein YP_985627.1 1399789 R 232721 CDS YP_985628.1 121593732 4674663 complement(1401279..1401641) 1 NC_008782.1 KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein 1401641 4674663 Ajs_1333 Acidovorax sp. JS42 hypothetical protein YP_985628.1 1401279 R 232721 CDS YP_985629.1 121593733 4674668 complement(1401705..1402415) 1 NC_008782.1 KEGG: dsy:DSY0910 hypothetical protein; hypothetical protein 1402415 4674668 Ajs_1334 Acidovorax sp. JS42 hypothetical protein YP_985629.1 1401705 R 232721 CDS YP_985630.1 121593734 4674666 complement(1402423..1404684) 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1404684 4674666 Ajs_1335 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985630.1 1402423 R 232721 CDS YP_985631.1 121593735 4674647 1404762..1405202 1 NC_008782.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: dar:Daro_2633 Cd(II)/Pb(II)-responsive transcriptional regulator; MerR family transcriptional regulator 1405202 4674647 Ajs_1336 Acidovorax sp. JS42 MerR family transcriptional regulator YP_985631.1 1404762 D 232721 CDS YP_985632.1 121593736 4674660 1405501..1407198 1 NC_008782.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: bma:BMAA1051 phage integrase family protein; phage integrase family protein 1407198 4674660 Ajs_1337 Acidovorax sp. JS42 phage integrase family protein YP_985632.1 1405501 D 232721 CDS YP_985633.1 121593737 4674640 1407237..1407821 1 NC_008782.1 KEGG: mlo:mlr6200 hypothetical protein; hypothetical protein 1407821 4674640 Ajs_1338 Acidovorax sp. JS42 hypothetical protein YP_985633.1 1407237 D 232721 CDS YP_985634.1 121593738 4674581 1408940..1410403 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: xcv:XCV2298 phage-related integrase; phage integrase family protein 1410403 4674581 Ajs_1340 Acidovorax sp. JS42 phage integrase family protein YP_985634.1 1408940 D 232721 CDS YP_985635.1 121593739 4674577 complement(1410398..1411162) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1411162 4674577 Ajs_1341 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985635.1 1410398 R 232721 CDS YP_985636.1 121593740 4674569 complement(1411159..1412754) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 1412754 4674569 Ajs_1342 Acidovorax sp. JS42 integrase catalytic subunit YP_985636.1 1411159 R 232721 CDS YP_985637.1 121593741 4674549 complement(1413518..1414159) 1 NC_008782.1 PFAM: LysR, substrate-binding; KEGG: xcv:XCV2299 transcriptional regulator, LysR family; LysR family transcriptional regulator 1414159 4674549 Ajs_1344 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985637.1 1413518 R 232721 CDS YP_985638.1 121593742 4674542 1414333..1414950 1 NC_008782.1 KEGG: mag:amb3764 hypothetical protein; hypothetical protein 1414950 4674542 Ajs_1345 Acidovorax sp. JS42 hypothetical protein YP_985638.1 1414333 D 232721 CDS YP_985639.1 121593743 4674533 1414947..1416617 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 1416617 4674533 Ajs_1346 Acidovorax sp. JS42 integrase catalytic subunit YP_985639.1 1414947 D 232721 CDS YP_985640.1 121593744 4674544 1416614..1417510 1 NC_008782.1 PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 1417510 4674544 Ajs_1347 Acidovorax sp. JS42 TniB family protein YP_985640.1 1416614 D 232721 CDS YP_985641.1 121593745 4674519 1417582..1419000 1 NC_008782.1 KEGG: mag:amb3760 hypothetical protein; hypothetical protein 1419000 4674519 Ajs_1348 Acidovorax sp. JS42 hypothetical protein YP_985641.1 1417582 D 232721 CDS YP_985642.1 121593746 4674420 1419138..1419431 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2300 hypothetical protein; XRE family transcriptional regulator 1419431 4674420 Ajs_1349 Acidovorax sp. JS42 XRE family transcriptional regulator YP_985642.1 1419138 D 232721 CDS YP_985643.1 121593747 4674517 complement(1419438..1420328) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2301 transcriptional regulator, LysR family; LysR family transcriptional regulator 1420328 4674517 Ajs_1350 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985643.1 1419438 R 232721 CDS YP_985644.1 121593748 4674518 complement(1420365..1420688) 1 NC_008782.1 KEGG: xcv:XCV2302 hypothetical protein; hypothetical protein 1420688 4674518 Ajs_1351 Acidovorax sp. JS42 hypothetical protein YP_985644.1 1420365 R 232721 CDS YP_985645.1 121593749 4674501 complement(1420726..1422093) 1 NC_008782.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1422093 4674501 Ajs_1352 Acidovorax sp. JS42 dihydrolipoamide dehydrogenase YP_985645.1 1420726 R 232721 CDS YP_985646.1 121593750 4674504 complement(1422134..1422940) 1 NC_008782.1 PFAM: protein of unknown function DUF81; KEGG: xcv:XCV2304 hypothetical protein; hypothetical protein 1422940 4674504 Ajs_1353 Acidovorax sp. JS42 hypothetical protein YP_985646.1 1422134 R 232721 CDS YP_985647.1 121593751 4674467 complement(1422959..1423471) 1 NC_008782.1 KEGG: xcv:XCV2305 hypothetical protein; hypothetical protein 1423471 4674467 Ajs_1354 Acidovorax sp. JS42 hypothetical protein YP_985647.1 1422959 R 232721 CDS YP_985648.1 121593752 4674479 complement(1423567..1424340) 1 NC_008782.1 Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase 1424340 dsbG 4674479 dsbG Acidovorax sp. JS42 disulfide isomerase/thiol-disulfide oxidase YP_985648.1 1423567 R 232721 CDS YP_985649.1 121593753 4674468 complement(1424343..1425179) 1 NC_008782.1 PFAM: Redoxin domain protein; KEGG: xcv:XCV2307 putative thiol disulfide interchange protein; redoxin domain-containing protein 1425179 4674468 Ajs_1356 Acidovorax sp. JS42 redoxin domain-containing protein YP_985649.1 1424343 R 232721 CDS YP_985650.1 121593754 4674058 complement(1425179..1427017) 1 NC_008782.1 PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: xcv:XCV2308 putative thiol:disulfide interchange protein; cytochrome c biogenesis protein transmembrane subunit 1427017 4674058 Ajs_1357 Acidovorax sp. JS42 cytochrome c biogenesis protein transmembrane subunit YP_985650.1 1425179 R 232721 CDS YP_985651.1 121593755 4674466 1427164..1427832 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV2309 two-component system regulatory protein; two component transcriptional regulator 1427832 4674466 Ajs_1358 Acidovorax sp. JS42 two component transcriptional regulator YP_985651.1 1427164 D 232721 CDS YP_985652.1 121593756 4674442 1427829..1429187 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: xcv:XCV2310 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 1429187 4674442 Ajs_1359 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_985652.1 1427829 D 232721 CDS YP_985653.1 121593757 4674449 complement(1429251..1430249) 1 NC_008782.1 KEGG: xcv:XCV2311 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 1430249 4674449 Ajs_1360 Acidovorax sp. JS42 thioredoxin reductase YP_985653.1 1429251 R 232721 CDS YP_985654.1 121593758 4674435 complement(1430252..1430770) 1 NC_008782.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: xcv:XCV2312 hypothetical protein; carboxymuconolactone decarboxylase 1430770 4674435 Ajs_1361 Acidovorax sp. JS42 carboxymuconolactone decarboxylase YP_985654.1 1430252 R 232721 CDS YP_985655.1 121593759 4674418 complement(1430854..1431174) 1 NC_008782.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcv:XCV2313 putative thioredoxin; thioredoxin 1431174 4674418 Ajs_1362 Acidovorax sp. JS42 thioredoxin YP_985655.1 1430854 R 232721 CDS YP_985656.1 121593760 4674426 1431365..1432048 1 NC_008782.1 PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: xcv:XCV2314 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1432048 4674426 Ajs_1363 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_985656.1 1431365 D 232721 CDS YP_985657.1 121593761 4674428 complement(1432066..1432710) 1 NC_008782.1 PFAM: DSBA oxidoreductase; KEGG: xcv:XCV2315 putative thiol:disulfide interchange protein; DSBA oxidoreductase 1432710 4674428 Ajs_1364 Acidovorax sp. JS42 DSBA oxidoreductase YP_985657.1 1432066 R 232721 CDS YP_985658.1 121593762 4674411 complement(1432774..1433673) 1 NC_008782.1 KEGG: xcv:XCV2316 putative secreted protein; hypothetical protein 1433673 4674411 Ajs_1365 Acidovorax sp. JS42 hypothetical protein YP_985658.1 1432774 R 232721 CDS YP_985659.1 121593763 4674417 complement(1433812..1434276) 1 NC_008782.1 KEGG: xcv:XCV2317 putative secreted protein; hypothetical protein 1434276 4674417 Ajs_1366 Acidovorax sp. JS42 hypothetical protein YP_985659.1 1433812 R 232721 CDS YP_985660.1 121593764 4674405 complement(1434386..1435363) 1 NC_008782.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: xcv:XCV2318 tellurite-resistance/dicarboxylate transporter family protein; potassium-tellurite ethidium and proflavin transporter 1435363 4674405 Ajs_1367 Acidovorax sp. JS42 potassium-tellurite ethidium and proflavin transporter YP_985660.1 1434386 R 232721 CDS YP_985661.1 121593765 4674402 complement(1435451..1435708) 1 NC_008782.1 PFAM: Heavy metal transport/detoxification protein; KEGG: xcv:XCV2319 hypothetical protein; heavy metal transport/detoxification protein 1435708 4674402 Ajs_1368 Acidovorax sp. JS42 heavy metal transport/detoxification protein YP_985661.1 1435451 R 232721 CDS YP_985662.1 121593766 4674400 complement(1435867..1436952) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2339 putative major facilitator superfamily protein; major facilitator superfamily transporter 1436952 4674400 Ajs_1369 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985662.1 1435867 R 232721 CDS YP_985663.1 121593767 4674388 complement(1437274..1438275) 1 NC_008782.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 1438275 4674388 Ajs_1370 Acidovorax sp. JS42 cation diffusion facilitator family transporter YP_985663.1 1437274 R 232721 CDS YP_985664.1 121593768 4674381 complement(1438464..1438817) 1 NC_008782.1 PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1438817 4674381 Ajs_1371 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_985664.1 1438464 R 232721 CDS YP_985665.1 121593769 4674374 1438985..1441486 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1441486 4674374 Ajs_1372 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985665.1 1438985 D 232721 CDS YP_985666.1 121593770 4674376 1441502..1441981 1 NC_008782.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1441981 4674376 Ajs_1373 Acidovorax sp. JS42 MerR family transcriptional regulator YP_985666.1 1441502 D 232721 CDS YP_985667.1 121593771 4674361 complement(1442055..1443284) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2334 putative major facilitator superfamily protein; major facilitator superfamily transporter 1443284 4674361 Ajs_1374 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985667.1 1442055 R 232721 CDS YP_985668.1 121593772 4674353 complement(1443337..1444365) 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2333 putative Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase 1444365 4674353 Ajs_1375 Acidovorax sp. JS42 alcohol dehydrogenase YP_985668.1 1443337 R 232721 CDS YP_985669.1 121593773 4674349 complement(1444402..1445580) 1 NC_008782.1 PFAM: aminotransferase, class I and II; KEGG: xcv:XCV2332 putative aminotransferase; class I/II aminotransferase 1445580 4674349 Ajs_1376 Acidovorax sp. JS42 class I/II aminotransferase YP_985669.1 1444402 R 232721 CDS YP_985670.1 121593774 4674347 complement(1445599..1446747) 1 NC_008782.1 PFAM: amine oxidase; KEGG: xcv:XCV2331 putative amine oxidase; amine oxidase 1446747 4674347 Ajs_1377 Acidovorax sp. JS42 amine oxidase YP_985670.1 1445599 R 232721 CDS YP_985671.1 121593775 4674336 1447206..1448285 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1448285 4674336 Ajs_1379 Acidovorax sp. JS42 integrase catalytic subunit YP_985671.1 1447206 D 232721 CDS YP_985672.1 121593776 4674332 1448388..1449467 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1449467 4674332 Ajs_1380 Acidovorax sp. JS42 integrase catalytic subunit YP_985672.1 1448388 D 232721 CDS YP_985673.1 121593777 4674324 complement(1451020..1451364) 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_6446 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase 1451364 4674324 Ajs_1382 Acidovorax sp. JS42 alkylhydroperoxidase YP_985673.1 1451020 R 232721 CDS YP_985674.1 121593778 4674309 complement(1451430..1451759) 1 NC_008782.1 KEGG: bam:Bamb_6447 hypothetical protein; hypothetical protein 1451759 4674309 Ajs_1383 Acidovorax sp. JS42 hypothetical protein YP_985674.1 1451430 R 232721 CDS YP_985675.1 121593779 4674307 complement(1451784..1452557) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_6448 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1452557 4674307 Ajs_1384 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_985675.1 1451784 R 232721 CDS YP_985676.1 121593780 4674284 1452758..1453693 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 1453693 4674284 Ajs_1385 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985676.1 1452758 D 232721 CDS YP_985677.1 121593781 4674294 1453950..1454447 1 NC_008782.1 KEGG: xcv:XCV2355 hypothetical protein; hypothetical protein 1454447 4674294 Ajs_1386 Acidovorax sp. JS42 hypothetical protein YP_985677.1 1453950 D 232721 CDS YP_985678.1 121593782 4674267 complement(1454512..1456494) 1 NC_008782.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein; relaxase 1456494 4674267 Ajs_1387 Acidovorax sp. JS42 relaxase YP_985678.1 1454512 R 232721 CDS YP_985679.1 121593783 4674275 1456658..1457284 1 NC_008782.1 KEGG: xcv:XCV2357 hypothetical protein; hypothetical protein 1457284 4674275 Ajs_1388 Acidovorax sp. JS42 hypothetical protein YP_985679.1 1456658 D 232721 CDS YP_985680.1 121593784 4674276 1457297..1457914 1 NC_008782.1 KEGG: xcv:XCV2358 hypothetical protein; hypothetical protein 1457914 4674276 Ajs_1389 Acidovorax sp. JS42 hypothetical protein YP_985680.1 1457297 D 232721 CDS YP_985681.1 121593785 4674120 1458014..1458376 1 NC_008782.1 KEGG: xcv:XCV2359 hypothetical protein; hypothetical protein 1458376 4674120 Ajs_1390 Acidovorax sp. JS42 hypothetical protein YP_985681.1 1458014 D 232721 CDS YP_985682.1 121593786 4674051 complement(1458383..1459906) 1 NC_008782.1 KEGG: xcv:XCV2360 hypothetical protein; hypothetical protein 1459906 4674051 Ajs_1391 Acidovorax sp. JS42 hypothetical protein YP_985682.1 1458383 R 232721 CDS YP_985683.1 121593787 4674261 complement(1459921..1460292) 1 NC_008782.1 KEGG: xcv:XCV2361 hypothetical protein; hypothetical protein 1460292 4674261 Ajs_1392 Acidovorax sp. JS42 hypothetical protein YP_985683.1 1459921 R 232721 CDS YP_985684.1 121593788 4674247 complement(1460289..1461686) 1 NC_008782.1 KEGG: xcv:XCV2362 hypothetical protein; hypothetical protein 1461686 4674247 Ajs_1393 Acidovorax sp. JS42 hypothetical protein YP_985684.1 1460289 R 232721 CDS YP_985685.1 121593789 4674168 complement(1461696..1462643) 1 NC_008782.1 PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein; hypothetical protein 1462643 4674168 Ajs_1394 Acidovorax sp. JS42 hypothetical protein YP_985685.1 1461696 R 232721 CDS YP_985686.1 121593790 4674233 complement(1462640..1463086) 1 NC_008782.1 PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525; hypothetical protein 1463086 4674233 Ajs_1395 Acidovorax sp. JS42 hypothetical protein YP_985686.1 1462640 R 232721 CDS YP_985687.1 121593791 4674228 complement(1463250..1463744) 1 NC_008782.1 PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC; DNA repair protein RadC 1463744 4674228 Ajs_1396 Acidovorax sp. JS42 DNA repair protein RadC YP_985687.1 1463250 R 232721 CDS YP_985688.1 121593792 4674235 complement(1463924..1464709) 1 NC_008782.1 KEGG: xcv:XCV2366 hypothetical protein; hypothetical protein 1464709 4674235 Ajs_1397 Acidovorax sp. JS42 hypothetical protein YP_985688.1 1463924 R 232721 CDS YP_985689.1 121593793 4674226 complement(1464723..1467590) 1 NC_008782.1 KEGG: xcv:XCV2367 hypothetical protein; hypothetical protein 1467590 4674226 Ajs_1398 Acidovorax sp. JS42 hypothetical protein YP_985689.1 1464723 R 232721 CDS YP_985690.1 121593794 4674213 complement(1467590..1468030) 1 NC_008782.1 KEGG: xcv:XCV2368 putative secreted protein; hypothetical protein 1468030 4674213 Ajs_1399 Acidovorax sp. JS42 hypothetical protein YP_985690.1 1467590 R 232721 CDS YP_985691.1 121593795 4674207 complement(1468011..1469441) 1 NC_008782.1 KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein 1469441 4674207 Ajs_1400 Acidovorax sp. JS42 hypothetical protein YP_985691.1 1468011 R 232721 CDS YP_985692.1 121593796 4674205 complement(1469431..1470339) 1 NC_008782.1 KEGG: rme:Rmet_2350 putative secreted protein; hypothetical protein 1470339 4674205 Ajs_1401 Acidovorax sp. JS42 hypothetical protein YP_985692.1 1469431 R 232721 CDS YP_985693.1 121593797 4674196 complement(1470336..1471028) 1 NC_008782.1 KEGG: rme:Rmet_2349 putative secreted protein; hypothetical protein 1471028 4674196 Ajs_1402 Acidovorax sp. JS42 hypothetical protein YP_985693.1 1470336 R 232721 CDS YP_985694.1 121593798 4674194 complement(1471025..1471423) 1 NC_008782.1 KEGG: rme:Rmet_2348 hypothetical protein; hypothetical protein 1471423 4674194 Ajs_1403 Acidovorax sp. JS42 hypothetical protein YP_985694.1 1471025 R 232721 CDS YP_985695.1 121593799 4674174 complement(1471435..1471794) 1 NC_008782.1 KEGG: rme:Rmet_2347 hypothetical protein; hypothetical protein 1471794 4674174 Ajs_1404 Acidovorax sp. JS42 hypothetical protein YP_985695.1 1471435 R 232721 CDS YP_985696.1 121593800 4674177 complement(1471811..1472044) 1 NC_008782.1 KEGG: bxe:Bxe_A1191 hypothetical protein; hypothetical protein 1472044 4674177 Ajs_1405 Acidovorax sp. JS42 hypothetical protein YP_985696.1 1471811 R 232721 CDS YP_985697.1 121593801 4674171 complement(1472041..1472421) 1 NC_008782.1 KEGG: xcv:XCV2375 putative secreted protein; hypothetical protein 1472421 4674171 Ajs_1406 Acidovorax sp. JS42 hypothetical protein YP_985697.1 1472041 R 232721 CDS YP_985698.1 121593802 4674169 complement(1472520..1473269) 1 NC_008782.1 KEGG: xcv:XCV2376 hypothetical protein; hypothetical protein 1473269 4674169 Ajs_1407 Acidovorax sp. JS42 hypothetical protein YP_985698.1 1472520 R 232721 CDS YP_985699.1 121593803 4673736 complement(1473266..1475458) 1 NC_008782.1 KEGG: bxe:Bxe_A1195 hypothetical protein; hypothetical protein 1475458 4673736 Ajs_1408 Acidovorax sp. JS42 hypothetical protein YP_985699.1 1473266 R 232721 CDS YP_985700.1 121593804 4673732 complement(1475463..1476011) 1 NC_008782.1 KEGG: rme:Rmet_2335 putative secreted protein; hypothetical protein 1476011 4673732 Ajs_1409 Acidovorax sp. JS42 hypothetical protein YP_985700.1 1475463 R 232721 CDS YP_985701.1 121593805 4673603 complement(1476008..1476598) 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor; lytic transglycosylase catalytic subunit 1476598 4673603 Ajs_1410 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985701.1 1476008 R 232721 CDS YP_985702.1 121593806 4673285 complement(1476580..1477305) 1 NC_008782.1 KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein 1477305 4673285 Ajs_1411 Acidovorax sp. JS42 hypothetical protein YP_985702.1 1476580 R 232721 CDS YP_985703.1 121593807 4673283 complement(1477318..1477944) 1 NC_008782.1 KEGG: xcv:XCV2381 putative secreted protein; hypothetical protein 1477944 4673283 Ajs_1412 Acidovorax sp. JS42 hypothetical protein YP_985703.1 1477318 R 232721 CDS YP_985704.1 121593808 4673523 complement(1477941..1478540) 1 NC_008782.1 KEGG: xcv:XCV2382 putative secreted protein; hypothetical protein 1478540 4673523 Ajs_1413 Acidovorax sp. JS42 hypothetical protein YP_985704.1 1477941 R 232721 CDS YP_985705.1 121593809 4673520 complement(1478729..1479817) 1 NC_008782.1 KEGG: xcv:XCV2383 hypothetical protein; hypothetical protein 1479817 4673520 Ajs_1414 Acidovorax sp. JS42 hypothetical protein YP_985705.1 1478729 R 232721 CDS YP_985706.1 121593810 4673504 complement(1479834..1481960) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: xcv:XCV2384 putative cytochrome precursor; class I cytochrome c 1481960 4673504 Ajs_1415 Acidovorax sp. JS42 class I cytochrome c YP_985706.1 1479834 R 232721 CDS YP_985707.1 121593811 4673495 complement(1482357..1483043) 1 NC_008782.1 KEGG: xcv:XCV2385 hypothetical protein; hypothetical protein 1483043 4673495 Ajs_1416 Acidovorax sp. JS42 hypothetical protein YP_985707.1 1482357 R 232721 CDS YP_985708.1 121593812 4673479 complement(1483155..1485434) 1 NC_008782.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: xcv:XCV2386 putative helicase; helicase domain-containing protein 1485434 4673479 Ajs_1417 Acidovorax sp. JS42 helicase domain-containing protein YP_985708.1 1483155 R 232721 CDS YP_985709.1 121593813 4673262 complement(1485571..1485876) 1 NC_008782.1 KEGG: rme:Rmet_2329 hypothetical protein; hypothetical protein 1485876 4673262 Ajs_1418 Acidovorax sp. JS42 hypothetical protein YP_985709.1 1485571 R 232721 CDS YP_985710.1 121593814 4673445 complement(1485966..1486286) 1 NC_008782.1 KEGG: rme:Rmet_2328 hypothetical protein; hypothetical protein 1486286 4673445 Ajs_1419 Acidovorax sp. JS42 hypothetical protein YP_985710.1 1485966 R 232721 CDS YP_985711.1 121593815 4673102 complement(1486337..1487485) 1 NC_008782.1 KEGG: xcv:XCV2389 hypothetical protein; hypothetical protein 1487485 4673102 Ajs_1420 Acidovorax sp. JS42 hypothetical protein YP_985711.1 1486337 R 232721 CDS YP_985712.1 121593816 4673380 complement(1487511..1488158) 1 NC_008782.1 KEGG: rme:Rmet_2326 hypothetical protein; hypothetical protein 1488158 4673380 Ajs_1421 Acidovorax sp. JS42 hypothetical protein YP_985712.1 1487511 R 232721 CDS YP_985713.1 121593817 4673374 1488439..1489401 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1489401 4673374 Ajs_1423 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_985713.1 1488439 D 232721 CDS YP_985714.1 121593818 4673371 complement(1489418..1489678) 1 NC_008782.1 KEGG: xcv:XCV2391 hypothetical protein; hypothetical protein 1489678 4673371 Ajs_1424 Acidovorax sp. JS42 hypothetical protein YP_985714.1 1489418 R 232721 CDS YP_985715.1 121593819 4673213 complement(1489695..1490102) 1 NC_008782.1 KEGG: xfa:XF1758 hypothetical protein; hypothetical protein 1490102 4673213 Ajs_1425 Acidovorax sp. JS42 hypothetical protein YP_985715.1 1489695 R 232721 CDS YP_985716.1 121593820 4673341 complement(1490209..1490550) 1 NC_008782.1 KEGG: rme:Rmet_2323 hypothetical protein; hypothetical protein 1490550 4673341 Ajs_1426 Acidovorax sp. JS42 hypothetical protein YP_985716.1 1490209 R 232721 CDS YP_985717.1 121593821 4672966 1492681..1493922 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 1493922 4672966 Ajs_1429 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_985717.1 1492681 D 232721 CDS YP_985718.1 121593822 4672955 complement(1493881..1494270) 1 NC_008782.1 KEGG: ecs:pO157p35 similar to SwissProt accession number P19593; SwissProt accession number P19593-like protein 1494270 4672955 Ajs_1430 Acidovorax sp. JS42 SwissProt accession number P19593-like protein YP_985718.1 1493881 R 232721 CDS YP_985719.1 121593823 4672935 complement(1494669..1495757) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 1495757 4672935 Ajs_1431 Acidovorax sp. JS42 transposase, IS4 family protein YP_985719.1 1494669 R 232721 CDS YP_985720.1 121593824 4672925 complement(1496191..1496409) 1 NC_008782.1 KEGG: xcv:XCV2394 hypothetical protein; hypothetical protein 1496409 4672925 Ajs_1433 Acidovorax sp. JS42 hypothetical protein YP_985720.1 1496191 R 232721 CDS YP_985721.1 121593825 4672717 complement(1496467..1497384) 1 NC_008782.1 KEGG: xcv:XCV2395 hypothetical protein; hypothetical protein 1497384 4672717 Ajs_1434 Acidovorax sp. JS42 hypothetical protein YP_985721.1 1496467 R 232721 CDS YP_985722.1 121593826 4672679 complement(1497750..1498103) 1 NC_008782.1 KEGG: xcv:XCV2396 hypothetical protein; hypothetical protein 1498103 4672679 Ajs_1435 Acidovorax sp. JS42 hypothetical protein YP_985722.1 1497750 R 232721 CDS YP_985723.1 121593827 4672693 complement(1498183..1498404) 1 NC_008782.1 KEGG: xcv:XCV2397 hypothetical protein; hypothetical protein 1498404 4672693 Ajs_1436 Acidovorax sp. JS42 hypothetical protein YP_985723.1 1498183 R 232721 CDS YP_985724.1 121593828 4672697 complement(1498401..1499213) 1 NC_008782.1 KEGG: xcv:XCV2398 hypothetical protein; hypothetical protein 1499213 4672697 Ajs_1437 Acidovorax sp. JS42 hypothetical protein YP_985724.1 1498401 R 232721 CDS YP_985725.1 121593829 4672691 complement(1499496..1499774) 1 NC_008782.1 KEGG: xcv:XCV2399 hypothetical protein; hypothetical protein 1499774 4672691 Ajs_1438 Acidovorax sp. JS42 hypothetical protein YP_985725.1 1499496 R 232721 CDS YP_985726.1 121593830 4672845 complement(1499872..1500609) 1 NC_008782.1 KEGG: xcv:XCV2400 hypothetical protein; hypothetical protein 1500609 4672845 Ajs_1439 Acidovorax sp. JS42 hypothetical protein YP_985726.1 1499872 R 232721 CDS YP_985727.1 121593831 4672328 complement(1500689..1501375) 1 NC_008782.1 KEGG: xcv:XCV2401 hypothetical protein; hypothetical protein 1501375 4672328 Ajs_1440 Acidovorax sp. JS42 hypothetical protein YP_985727.1 1500689 R 232721 CDS YP_985728.1 121593832 4672288 complement(1501521..1501913) 1 NC_008782.1 KEGG: rme:Rmet_2307 hypothetical protein; hypothetical protein 1501913 4672288 Ajs_1441 Acidovorax sp. JS42 hypothetical protein YP_985728.1 1501521 R 232721 CDS YP_985729.1 121593833 4672255 complement(1502490..1503248) 1 NC_008782.1 KEGG: xfa:XF1773 hypothetical protein; hypothetical protein 1503248 4672255 Ajs_1443 Acidovorax sp. JS42 hypothetical protein YP_985729.1 1502490 R 232721 CDS YP_985730.1 121593834 4672253 complement(1503291..1504910) 1 NC_008782.1 PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase; C-5 cytosine-specific DNA methylase 1504910 4672253 Ajs_1444 Acidovorax sp. JS42 C-5 cytosine-specific DNA methylase YP_985730.1 1503291 R 232721 CDS YP_985731.1 121593835 4672221 complement(1505436..1507448) 1 NC_008782.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1507448 4672221 Ajs_1445 Acidovorax sp. JS42 DNA topoisomerase III YP_985731.1 1505436 R 232721 CDS YP_985732.1 121593836 4672206 complement(1507725..1508177) 1 NC_008782.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1508177 4672206 Ajs_1446 Acidovorax sp. JS42 single-stranded DNA-binding protein YP_985732.1 1507725 R 232721 CDS YP_985733.1 121593837 4672182 complement(1508251..1508778) 1 NC_008782.1 KEGG: bxe:Bxe_A1225 putative integrase regulator R protein; putative integrase regulator R protein 1508778 4672182 Ajs_1447 Acidovorax sp. JS42 putative integrase regulator R protein YP_985733.1 1508251 R 232721 CDS YP_985734.1 121593838 4671974 complement(1508775..1509569) 1 NC_008782.1 KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein 1509569 4671974 Ajs_1448 Acidovorax sp. JS42 hypothetical protein YP_985734.1 1508775 R 232721 CDS YP_985735.1 121593839 4671972 complement(1510000..1511235) 1 NC_008782.1 KEGG: rme:Rmet_2294 hypothetical protein; hypothetical protein 1511235 4671972 Ajs_1449 Acidovorax sp. JS42 hypothetical protein YP_985735.1 1510000 R 232721 CDS YP_985736.1 121593840 4672128 complement(1511238..1511798) 1 NC_008782.1 KEGG: xcv:XCV2411 hypothetical protein; hypothetical protein 1511798 4672128 Ajs_1450 Acidovorax sp. JS42 hypothetical protein YP_985736.1 1511238 R 232721 CDS YP_985737.1 121593841 4671492 complement(1511814..1513469) 1 NC_008782.1 KEGG: xcv:XCV2412 hypothetical protein; hypothetical protein 1513469 4671492 Ajs_1451 Acidovorax sp. JS42 hypothetical protein YP_985737.1 1511814 R 232721 CDS YP_985738.1 121593842 4672122 complement(1513462..1513710) 1 NC_008782.1 KEGG: xcv:XCV2413 hypothetical protein; hypothetical protein 1513710 4672122 Ajs_1452 Acidovorax sp. JS42 hypothetical protein YP_985738.1 1513462 R 232721 CDS YP_985739.1 121593843 4671879 complement(1513694..1514569) 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein; cobyrinic acid a,c-diamide synthase 1514569 4671879 Ajs_1453 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_985739.1 1513694 R 232721 CDS YP_985740.1 121593844 4672091 complement(1514612..1514824) 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA 1514824 4672091 Ajs_1454 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_985740.1 1514612 R 232721 CDS YP_985741.1 121593845 4672073 complement(1514943..1515698) 1 NC_008782.1 KEGG: xcv:XCV2416 hypothetical protein; hypothetical protein 1515698 4672073 Ajs_1455 Acidovorax sp. JS42 hypothetical protein YP_985741.1 1514943 R 232721 CDS YP_985742.1 121593846 4671759 complement(1517148..1517435) 1 NC_008782.1 KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein 1517435 4671759 Ajs_1456 Acidovorax sp. JS42 hypothetical protein YP_985742.1 1517148 R 232721 CDS YP_985743.1 121593847 4671441 1517557..1517823 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: xcb:XC_0859 IS1477 transposase ORFA; transposase IS3/IS911 family protein 1517823 4671441 Ajs_1457 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_985743.1 1517557 D 232721 CDS YP_985744.1 121593848 4671679 complement(1518853..1519833) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 1519833 4671679 Ajs_1459 Acidovorax sp. JS42 transposase, IS4 family protein YP_985744.1 1518853 R 232721 CDS YP_985745.1 121593849 4671428 complement(1519984..1521369) 1 NC_008782.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 1521369 4671428 Ajs_1460 Acidovorax sp. JS42 heavy metal sensor signal transduction histidine kinase YP_985745.1 1519984 R 232721 CDS YP_985746.1 121593850 4671676 complement(1521370..1522053) 1 NC_008782.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 1522053 4671676 Ajs_1461 Acidovorax sp. JS42 two component heavy metal response transcriptional regulator YP_985746.1 1521370 R 232721 CDS YP_985747.1 121593851 4671645 1522384..1522728 1 NC_008782.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 1522728 4671645 Ajs_1463 Acidovorax sp. JS42 hypothetical protein YP_985747.1 1522384 D 232721 CDS YP_985748.1 121593852 4671469 1522818..1523291 1 NC_008782.1 KEGG: ppu:PP_5391 hypothetical protein; hypothetical protein 1523291 4671469 Ajs_1464 Acidovorax sp. JS42 hypothetical protein YP_985748.1 1522818 D 232721 CDS YP_985749.1 121593853 4671189 1523317..1523601 1 NC_008782.1 KEGG: ppu:PP_5390 hypothetical protein; hypothetical protein 1523601 4671189 Ajs_1465 Acidovorax sp. JS42 hypothetical protein YP_985749.1 1523317 D 232721 CDS YP_985750.1 121593854 4670574 1523598..1524266 1 NC_008782.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1524266 4670574 Ajs_1466 Acidovorax sp. JS42 isoprenylcysteine carboxyl methyltransferase YP_985750.1 1523598 D 232721 CDS YP_985751.1 121593855 4671590 1524318..1524611 1 NC_008782.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mmc:Mmcs_3947 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 1524611 4671590 Ajs_1467 Acidovorax sp. JS42 heavy metal transport/detoxification protein YP_985751.1 1524318 D 232721 CDS YP_985752.1 121593856 4671574 1524696..1524944 1 NC_008782.1 KEGG: ana:asl7591 hypothetical protein; hypothetical protein 1524944 4671574 Ajs_1468 Acidovorax sp. JS42 hypothetical protein YP_985752.1 1524696 D 232721 CDS YP_985753.1 121593857 4671562 1524948..1527281 1 NC_008782.1 KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1527281 4671562 Ajs_1469 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985753.1 1524948 D 232721 CDS YP_985754.1 121593858 4671550 1527302..1529140 1 NC_008782.1 KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein 1529140 4671550 Ajs_1470 Acidovorax sp. JS42 hypothetical protein YP_985754.1 1527302 D 232721 CDS YP_985755.1 121593859 4671442 1529246..1530292 1 NC_008782.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1, heme region; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; YVTN beta-propeller repeat-containing protein 1530292 4671442 Ajs_1471 Acidovorax sp. JS42 YVTN beta-propeller repeat-containing protein YP_985755.1 1529246 D 232721 CDS YP_985756.1 121593860 4671048 1530373..1530957 1 NC_008782.1 KEGG: mac:MA2063 hypothetical protein; hypothetical protein 1530957 4671048 Ajs_1472 Acidovorax sp. JS42 hypothetical protein YP_985756.1 1530373 D 232721 CDS YP_985757.1 121593861 4670558 complement(1531200..1531535) 1 NC_008782.1 PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein; hypothetical protein 1531535 4670558 Ajs_1473 Acidovorax sp. JS42 hypothetical protein YP_985757.1 1531200 R 232721 CDS YP_985758.1 121593862 4671042 complement(1531538..1531945) 1 NC_008782.1 TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: noc:Noc_2760 Hg(II)-responsive transcriptional regulator; MerR family transcriptional regulator 1531945 4671042 Ajs_1474 Acidovorax sp. JS42 MerR family transcriptional regulator YP_985758.1 1531538 R 232721 CDS YP_985759.1 121593863 4670989 1531988..1532359 1 NC_008782.1 PFAM: Mercuric transport protein MerT; KEGG: pol:Bpro_4797 mercuric transport protein MerT; putative mercuric transport protein 1532359 4670989 Ajs_1475 Acidovorax sp. JS42 putative mercuric transport protein YP_985759.1 1531988 D 232721 CDS YP_985760.1 121593864 4670548 1532372..1532656 1 NC_008782.1 TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: neu:NE0841 mercury scavenger protein:heavy-metal-associated domain; mercuric transport protein periplasmic component 1532656 4670548 Ajs_1476 Acidovorax sp. JS42 mercuric transport protein periplasmic component YP_985760.1 1532372 D 232721 CDS YP_985761.1 121593865 4670963 1533181..1533336 1 NC_008782.1 hypothetical protein 1533336 4670963 Ajs_1478 Acidovorax sp. JS42 hypothetical protein YP_985761.1 1533181 D 232721 CDS YP_985762.1 121593866 4670961 1533369..1534613 1 NC_008782.1 KEGG: pol:Bpro_1182 membrane protein-like; membrane protein 1534613 4670961 Ajs_1479 Acidovorax sp. JS42 membrane protein YP_985762.1 1533369 D 232721 CDS YP_985763.1 121593867 4670944 1534671..1534919 1 NC_008782.1 KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein 1534919 4670944 Ajs_1480 Acidovorax sp. JS42 hypothetical protein YP_985763.1 1534671 D 232721 CDS YP_985764.1 121593868 4670923 1534916..1536190 1 NC_008782.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein; outer membrane efflux protein 1536190 4670923 Ajs_1481 Acidovorax sp. JS42 outer membrane efflux protein YP_985764.1 1534916 D 232721 CDS YP_985765.1 121593869 4670918 1536187..1537800 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD; RND family efflux transporter MFP subunit 1537800 4670918 Ajs_1482 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_985765.1 1536187 D 232721 CDS YP_985766.1 121593870 4670875 1537816..1540947 1 NC_008782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1540947 4670875 Ajs_1483 Acidovorax sp. JS42 CzcA family heavy metal efflux protein YP_985766.1 1537816 D 232721 CDS YP_985767.1 121593871 4670530 complement(1541727..1542035) 1 NC_008782.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE 1542035 4670530 Ajs_1485 Acidovorax sp. JS42 flagellar hook-basal body complex subunit FliE YP_985767.1 1541727 R 232721 CDS YP_985768.1 121593872 4670528 1542464..1543726 1 NC_008782.1 KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein 1543726 4670528 Ajs_1486 Acidovorax sp. JS42 hypothetical protein YP_985768.1 1542464 D 232721 CDS YP_985769.1 121593873 4670840 1543726..1544067 1 NC_008782.1 hypothetical protein 1544067 4670840 Ajs_1487 Acidovorax sp. JS42 hypothetical protein YP_985769.1 1543726 D 232721 CDS YP_985770.1 121593874 4670765 1545501..1545752 1 NC_008782.1 hypothetical protein 1545752 4670765 Ajs_1490 Acidovorax sp. JS42 hypothetical protein YP_985770.1 1545501 D 232721 CDS YP_985771.1 121593875 4670754 1545867..1546181 1 NC_008782.1 KEGG: ana:asl7591 hypothetical protein; hypothetical protein 1546181 4670754 Ajs_1491 Acidovorax sp. JS42 hypothetical protein YP_985771.1 1545867 D 232721 CDS YP_985772.1 121593876 4670704 1546198..1546506 1 NC_008782.1 PFAM: Heavy metal transport/detoxification protein; KEGG: bcn:Bcen_5366 heavy metal translocating P-type ATPase; heavy metal transport/detoxification protein 1546506 4670704 Ajs_1492 Acidovorax sp. JS42 heavy metal transport/detoxification protein YP_985772.1 1546198 D 232721 CDS YP_985773.1 121593877 4670672 1546523..1547206 1 NC_008782.1 KEGG: tbd:Tbd_1323 hypothetical protein; hypothetical protein 1547206 4670672 Ajs_1493 Acidovorax sp. JS42 hypothetical protein YP_985773.1 1546523 D 232721 CDS YP_985774.1 121593878 4670505 1547678..1548946 1 NC_008782.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: psp:PSPPH_5162 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1548946 4670505 Ajs_1494 Acidovorax sp. JS42 cyclopropane-fatty-acyl-phospholipid synthase YP_985774.1 1547678 D 232721 CDS YP_985775.1 121593879 4674107 1549187..1551094 1 NC_008782.1 KEGG: reu:Reut_C6194 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; FtsH-2 peptidase 1551094 4674107 Ajs_1495 Acidovorax sp. JS42 FtsH-2 peptidase YP_985775.1 1549187 D 232721 CDS YP_985776.1 121593880 4674406 1551569..1553995 1 NC_008782.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 1553995 4674406 Ajs_1497 Acidovorax sp. JS42 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_985776.1 1551569 D 232721 CDS YP_985777.1 121593881 4674727 complement(1554548..1556170) 1 NC_008782.1 PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal; hypothetical protein 1556170 4674727 Ajs_1499 Acidovorax sp. JS42 hypothetical protein YP_985777.1 1554548 R 232721 CDS YP_985778.1 121593882 4670654 complement(1556335..1556979) 1 NC_008782.1 KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein 1556979 4670654 Ajs_1500 Acidovorax sp. JS42 hypothetical protein YP_985778.1 1556335 R 232721 CDS YP_985779.1 121593883 4671055 complement(1558602..1559198) 1 NC_008782.1 KEGG: son:SO3561 hypothetical protein; hypothetical protein 1559198 4671055 Ajs_1504 Acidovorax sp. JS42 hypothetical protein YP_985779.1 1558602 R 232721 CDS YP_985780.1 121593884 4671137 complement(1559208..1560371) 1 NC_008782.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mfa:Mfla_0261 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 1560371 4671137 Ajs_1505 Acidovorax sp. JS42 peptidase S1 and S6, chymotrypsin/Hap YP_985780.1 1559208 R 232721 CDS YP_985781.1 121593885 4671317 complement(1560368..1561267) 1 NC_008782.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 1561267 4671317 Ajs_1506 Acidovorax sp. JS42 phosphoribosylpyrophosphate synthetase YP_985781.1 1560368 R 232721 CDS YP_985782.1 121593886 4671546 complement(1561264..1562799) 1 NC_008782.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 1562799 4671546 Ajs_1507 Acidovorax sp. JS42 thymidine phosphorylase YP_985782.1 1561264 R 232721 CDS YP_985783.1 121593887 4671611 complement(1562796..1564154) 1 NC_008782.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein 1564154 4671611 Ajs_1508 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_985783.1 1562796 R 232721 CDS YP_985784.1 121593888 4671699 complement(1564180..1564677) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477; hypothetical protein 1564677 4671699 Ajs_1509 Acidovorax sp. JS42 hypothetical protein YP_985784.1 1564180 R 232721 CDS YP_985785.1 121593889 4671800 complement(1564680..1565558) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: bpm:BURPS1710b_0509 lipoprotein, putative; hypothetical protein 1565558 4671800 Ajs_1510 Acidovorax sp. JS42 hypothetical protein YP_985785.1 1564680 R 232721 CDS YP_985786.1 121593890 4672047 complement(1565555..1566169) 1 NC_008782.1 PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA; LemA family protein 1566169 4672047 Ajs_1511 Acidovorax sp. JS42 LemA family protein YP_985786.1 1565555 R 232721 CDS YP_985787.1 121593891 4672062 complement(1566172..1567497) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1567497 4672062 Ajs_1512 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985787.1 1566172 R 232721 CDS YP_985788.1 121593892 4671853 complement(1567547..1570000) 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1570000 4671853 Ajs_1513 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_985788.1 1567547 R 232721 CDS YP_985789.1 121593893 4672187 complement(1570022..1570867) 1 NC_008782.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 1570867 4672187 Ajs_1514 Acidovorax sp. JS42 hypothetical protein YP_985789.1 1570022 R 232721 CDS YP_985790.1 121593894 4672937 complement(1572859..1573947) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 1573947 4672937 Ajs_1519 Acidovorax sp. JS42 transposase, IS4 family protein YP_985790.1 1572859 R 232721 CDS YP_985791.1 121593895 4674003 1574583..1574918 1 NC_008782.1 KEGG: dar:Daro_2332 hypothetical protein; hypothetical protein 1574918 4674003 Ajs_1521 Acidovorax sp. JS42 hypothetical protein YP_985791.1 1574583 D 232721 CDS YP_985792.1 121593896 4673499 complement(1575551..1577734) 1 NC_008782.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 1577734 4673499 Ajs_1523 Acidovorax sp. JS42 TonB-dependent siderophore receptor YP_985792.1 1575551 R 232721 CDS YP_985793.1 121593897 4673687 complement(1578073..1580844) 1 NC_008782.1 PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein; TraG domain-containing protein 1580844 4673687 Ajs_1524 Acidovorax sp. JS42 TraG domain-containing protein YP_985793.1 1578073 R 232721 CDS YP_985794.1 121593898 4673884 complement(1580866..1582314) 1 NC_008782.1 PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein; TraH family protein 1582314 4673884 Ajs_1525 Acidovorax sp. JS42 TraH family protein YP_985794.1 1580866 R 232721 CDS YP_985795.1 121593899 4674050 complement(1582324..1583199) 1 NC_008782.1 KEGG: eba:ebA6633 hypothetical protein; hypothetical protein 1583199 4674050 Ajs_1526 Acidovorax sp. JS42 hypothetical protein YP_985795.1 1582324 R 232721 CDS YP_985796.1 121593900 4674643 complement(1583210..1583605) 1 NC_008782.1 KEGG: eba:ebA6631 hypothetical protein; hypothetical protein 1583605 4674643 Ajs_1527 Acidovorax sp. JS42 hypothetical protein YP_985796.1 1583210 R 232721 CDS YP_985797.1 121593901 4674489 complement(1583596..1586013) 1 NC_008782.1 TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN 1586013 4674489 Ajs_1528 Acidovorax sp. JS42 conjugal transfer mating pair stabilization protein TraN YP_985797.1 1583596 R 232721 CDS YP_985798.1 121593902 4673953 complement(1586023..1586775) 1 NC_008782.1 KEGG: dar:Daro_2659 hypothetical protein; hypothetical protein 1586775 4673953 Ajs_1529 Acidovorax sp. JS42 hypothetical protein YP_985798.1 1586023 R 232721 CDS YP_985799.1 121593903 4673700 complement(1586762..1587787) 1 NC_008782.1 PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein; TraU family protein 1587787 4673700 Ajs_1530 Acidovorax sp. JS42 TraU family protein YP_985799.1 1586762 R 232721 CDS YP_985800.1 121593904 4673287 complement(1587784..1588422) 1 NC_008782.1 TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6618 hypothetical protein; membrane lipoprotein lipid attachment site 1588422 4673287 Ajs_1531 Acidovorax sp. JS42 membrane lipoprotein lipid attachment site YP_985800.1 1587784 R 232721 CDS YP_985801.1 121593905 4673510 complement(1588419..1588802) 1 NC_008782.1 KEGG: dar:Daro_2323 hypothetical protein; hypothetical protein 1588802 4673510 Ajs_1532 Acidovorax sp. JS42 hypothetical protein YP_985801.1 1588419 R 232721 CDS YP_985802.1 121593906 4673431 complement(1588814..1589398) 1 NC_008782.1 KEGG: eba:ebA6617 hypothetical protein; hypothetical protein 1589398 4673431 Ajs_1533 Acidovorax sp. JS42 hypothetical protein YP_985802.1 1588814 R 232721 CDS YP_985803.1 121593907 4673377 complement(1589395..1589751) 1 NC_008782.1 KEGG: eba:ebD17 hypothetical protein; hypothetical protein 1589751 4673377 Ajs_1534 Acidovorax sp. JS42 hypothetical protein YP_985803.1 1589395 R 232721 CDS YP_985804.1 121593908 4673327 complement(1589748..1592330) 1 NC_008782.1 KEGG: dar:Daro_2653 hypothetical protein; hypothetical protein 1592330 4673327 Ajs_1535 Acidovorax sp. JS42 hypothetical protein YP_985804.1 1589748 R 232721 CDS YP_985805.1 121593909 4672993 complement(1592338..1592979) 1 NC_008782.1 KEGG: eba:ebA6611 hypothetical protein; hypothetical protein 1592979 4672993 Ajs_1536 Acidovorax sp. JS42 hypothetical protein YP_985805.1 1592338 R 232721 CDS YP_985806.1 121593910 4672722 complement(1592976..1593824) 1 NC_008782.1 KEGG: eba:ebA6610 periplasmic thiol:disulfide interchange protein; periplasmic thiol:disulfide interchange protein 1593824 4672722 Ajs_1537 Acidovorax sp. JS42 periplasmic thiol:disulfide interchange protein YP_985806.1 1592976 R 232721 CDS YP_985807.1 121593911 4672829 complement(1593808..1595226) 1 NC_008782.1 PFAM: TraB pilus assembly family protein; KEGG: eba:ebA6607 plasmid-like sex pilus assembly protein TraB; TraB pilus assembly family protein 1595226 4672829 Ajs_1538 Acidovorax sp. JS42 TraB pilus assembly family protein YP_985807.1 1593808 R 232721 CDS YP_985808.1 121593912 4672384 complement(1595223..1596230) 1 NC_008782.1 KEGG: eba:ebA6601 hypothetical protein; hypothetical protein 1596230 4672384 Ajs_1539 Acidovorax sp. JS42 hypothetical protein YP_985808.1 1595223 R 232721 CDS YP_985809.1 121593913 4672319 complement(1596217..1596783) 1 NC_008782.1 KEGG: eba:ebA6600 plasmid-like conjugative transfer protein TraE; plasmid-like conjugative transfer protein TraE 1596783 4672319 Ajs_1540 Acidovorax sp. JS42 plasmid-like conjugative transfer protein TraE YP_985809.1 1596217 R 232721 CDS YP_985810.1 121593914 4672258 complement(1596798..1597097) 1 NC_008782.1 PFAM: TraL family protein; KEGG: dar:Daro_2647 TraL; TraL family protein 1597097 4672258 Ajs_1541 Acidovorax sp. JS42 TraL family protein YP_985810.1 1596798 R 232721 CDS YP_985811.1 121593915 4672213 complement(1597129..1597491) 1 NC_008782.1 KEGG: dar:Daro_2313 hypothetical protein; hypothetical protein 1597491 4672213 Ajs_1542 Acidovorax sp. JS42 hypothetical protein YP_985811.1 1597129 R 232721 CDS YP_985812.1 121593916 4672165 complement(1597589..1598011) 1 NC_008782.1 hypothetical protein 1598011 4672165 Ajs_1543 Acidovorax sp. JS42 hypothetical protein YP_985812.1 1597589 R 232721 CDS YP_985813.1 121593917 4672152 complement(1598008..1598535) 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: dar:Daro_2644 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1598535 4672152 Ajs_1544 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985813.1 1598008 R 232721 CDS YP_985814.1 121593918 4672124 complement(1598677..1599174) 1 NC_008782.1 KEGG: eba:ebA6591 hypothetical protein; hypothetical protein 1599174 4672124 Ajs_1545 Acidovorax sp. JS42 hypothetical protein YP_985814.1 1598677 R 232721 CDS YP_985815.1 121593919 4671750 complement(1599378..1599686) 1 NC_008782.1 KEGG: dar:Daro_2232 hypothetical protein; hypothetical protein 1599686 4671750 Ajs_1546 Acidovorax sp. JS42 hypothetical protein YP_985815.1 1599378 R 232721 CDS YP_985816.1 121593920 4671709 1599827..1600099 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I3134 DNA-binding protein; helix-turn-helix domain-containing protein 1600099 4671709 Ajs_1547 Acidovorax sp. JS42 helix-turn-helix domain-containing protein YP_985816.1 1599827 D 232721 CDS YP_985817.1 121593921 4671626 complement(1600115..1600738) 1 NC_008782.1 KEGG: dar:Daro_2308 hypothetical protein; hypothetical protein 1600738 4671626 Ajs_1548 Acidovorax sp. JS42 hypothetical protein YP_985817.1 1600115 R 232721 CDS YP_985818.1 121593922 4671609 complement(1600735..1602636) 1 NC_008782.1 KEGG: dar:Daro_2307 hypothetical protein; hypothetical protein 1602636 4671609 Ajs_1549 Acidovorax sp. JS42 hypothetical protein YP_985818.1 1600735 R 232721 CDS YP_985819.1 121593923 4671417 complement(1602638..1604431) 1 NC_008782.1 PFAM: Relaxase; KEGG: dar:Daro_2306 relaxase; FHA domain-containing protein 1604431 4671417 Ajs_1550 Acidovorax sp. JS42 FHA domain-containing protein YP_985819.1 1602638 R 232721 CDS YP_985820.1 121593924 4671527 complement(1604485..1605147) 1 NC_008782.1 KEGG: dar:Daro_2305 hypothetical protein; hypothetical protein 1605147 4671527 Ajs_1551 Acidovorax sp. JS42 hypothetical protein YP_985820.1 1604485 R 232721 CDS YP_985821.1 121593925 4670559 complement(1605148..1605462) 1 NC_008782.1 KEGG: dar:Daro_2304 hypothetical protein; hypothetical protein 1605462 4670559 Ajs_1552 Acidovorax sp. JS42 hypothetical protein YP_985821.1 1605148 R 232721 CDS YP_985822.1 121593926 4670983 1605739..1606461 1 NC_008782.1 PFAM: peptidase S24, S26A and S26B; KEGG: eci:UTI89_C5095 putative regulatory protein; putative phage repressor 1606461 4670983 Ajs_1553 Acidovorax sp. JS42 putative phage repressor YP_985822.1 1605739 D 232721 CDS YP_985823.1 121593927 4670858 complement(1606545..1607609) 1 NC_008782.1 KEGG: dar:Daro_2292 hypothetical protein; hypothetical protein 1607609 4670858 Ajs_1554 Acidovorax sp. JS42 hypothetical protein YP_985823.1 1606545 R 232721 CDS YP_985824.1 121593928 4670825 1607621..1607923 1 NC_008782.1 hypothetical protein 1607923 4670825 Ajs_1555 Acidovorax sp. JS42 hypothetical protein YP_985824.1 1607621 D 232721 CDS YP_985825.1 121593929 4670781 complement(1607893..1608897) 1 NC_008782.1 SMART: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2291 hypothetical protein; phage P4 alpha zinc-binding domain-containing protein 1608897 4670781 Ajs_1556 Acidovorax sp. JS42 phage P4 alpha zinc-binding domain-containing protein YP_985825.1 1607893 R 232721 CDS YP_985826.1 121593930 4670720 complement(1608884..1610521) 1 NC_008782.1 KEGG: dar:Daro_2290 ATP-binding region, ATPase-like; ATP-binding region, ATPase-like protein 1610521 4670720 Ajs_1557 Acidovorax sp. JS42 ATP-binding region, ATPase-like protein YP_985826.1 1608884 R 232721 CDS YP_985827.1 121593931 4670691 complement(1610588..1610926) 1 NC_008782.1 KEGG: dar:Daro_2571 hypothetical protein; hypothetical protein 1610926 4670691 Ajs_1558 Acidovorax sp. JS42 hypothetical protein YP_985827.1 1610588 R 232721 CDS YP_985828.1 121593932 4670667 complement(1610923..1611144) 1 NC_008782.1 KEGG: dar:Daro_2288 hypothetical protein; hypothetical protein 1611144 4670667 Ajs_1559 Acidovorax sp. JS42 hypothetical protein YP_985828.1 1610923 R 232721 CDS YP_985829.1 121593933 4670627 complement(1611178..1611759) 1 NC_008782.1 KEGG: dar:Daro_2287 hypothetical protein; hypothetical protein 1611759 4670627 Ajs_1560 Acidovorax sp. JS42 hypothetical protein YP_985829.1 1611178 R 232721 CDS YP_985830.1 121593934 4674716 1612250..1613035 1 NC_008782.1 KEGG: dar:Daro_2286 hypothetical protein; hypothetical protein 1613035 4674716 Ajs_1561 Acidovorax sp. JS42 hypothetical protein YP_985830.1 1612250 D 232721 CDS YP_985831.1 121593935 4674625 1613465..1613704 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2566 prophage CP4-57 regulatory; phage transcriptional regulator AlpA 1613704 4674625 Ajs_1562 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_985831.1 1613465 D 232721 CDS YP_985832.1 121593936 4670623 complement(1613932..1615059) 1 NC_008782.1 hypothetical protein 1615059 4670623 Ajs_1563 Acidovorax sp. JS42 hypothetical protein YP_985832.1 1613932 R 232721 CDS YP_985833.1 121593937 4670628 complement(1615232..1616500) 1 NC_008782.1 PFAM: protein of unknown function DUF1173; KEGG: dar:Daro_2244 protein of unknown function DUF1173; hypothetical protein 1616500 4670628 Ajs_1564 Acidovorax sp. JS42 hypothetical protein YP_985833.1 1615232 R 232721 CDS YP_985834.1 121593938 4670664 complement(1616506..1617459) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: dar:Daro_2245 hypothetical protein; phage integrase family protein 1617459 4670664 Ajs_1565 Acidovorax sp. JS42 phage integrase family protein YP_985834.1 1616506 R 232721 CDS YP_985835.1 121593939 4670710 1617751..1619034 1 NC_008782.1 KEGG: dar:Daro_2239 hypothetical protein; hypothetical protein 1619034 4670710 Ajs_1566 Acidovorax sp. JS42 hypothetical protein YP_985835.1 1617751 D 232721 CDS YP_985836.1 121593940 4670737 1619046..1620326 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: dar:Daro_2561 DNA repair exonuclease-like protein; metallophosphoesterase 1620326 4670737 Ajs_1567 Acidovorax sp. JS42 metallophosphoesterase YP_985836.1 1619046 D 232721 CDS YP_985837.1 121593941 4670744 complement(1620424..1622751) 1 NC_008782.1 PFAM: protein of unknown function DUF450; hypothetical protein 1622751 4670744 Ajs_1568 Acidovorax sp. JS42 hypothetical protein YP_985837.1 1620424 R 232721 CDS YP_985838.1 121593942 4670773 complement(1622792..1623757) 1 NC_008782.1 KEGG: bpm:BURPS1710b_2544 hypothetical protein; hypothetical protein 1623757 4670773 Ajs_1569 Acidovorax sp. JS42 hypothetical protein YP_985838.1 1622792 R 232721 CDS YP_985839.1 121593943 4670809 complement(1623754..1624155) 1 NC_008782.1 KEGG: plt:Plut_1900 hypothetical protein; hypothetical protein 1624155 4670809 Ajs_1570 Acidovorax sp. JS42 hypothetical protein YP_985839.1 1623754 R 232721 CDS YP_985840.1 121593944 4670826 1624371..1626839 1 NC_008782.1 KEGG: dar:Daro_2237 putative ATPase involved in DNA repair; putative DNA repair ATPase 1626839 4670826 Ajs_1571 Acidovorax sp. JS42 putative DNA repair ATPase YP_985840.1 1624371 D 232721 CDS YP_985841.1 121593945 4670842 complement(1626891..1627199) 1 NC_008782.1 KEGG: dar:Daro_2232 hypothetical protein; hypothetical protein 1627199 4670842 Ajs_1572 Acidovorax sp. JS42 hypothetical protein YP_985841.1 1626891 R 232721 CDS YP_985842.1 121593946 4670854 1627741..1627953 1 NC_008782.1 KEGG: dar:Daro_2230 hypothetical protein; hypothetical protein 1627953 4670854 Ajs_1573 Acidovorax sp. JS42 hypothetical protein YP_985842.1 1627741 D 232721 CDS YP_985843.1 121593947 4670535 complement(1628033..1628545) 1 NC_008782.1 KEGG: dar:Daro_2227 hypothetical protein; hypothetical protein 1628545 4670535 Ajs_1574 Acidovorax sp. JS42 hypothetical protein YP_985843.1 1628033 R 232721 CDS YP_985844.1 121593948 4670543 1628672..1628902 1 NC_008782.1 KEGG: dar:Daro_2226 hypothetical protein; hypothetical protein 1628902 4670543 Ajs_1575 Acidovorax sp. JS42 hypothetical protein YP_985844.1 1628672 D 232721 CDS YP_985845.1 121593949 4670978 complement(1628873..1629391) 1 NC_008782.1 KEGG: dar:Daro_2225 hypothetical protein; hypothetical protein 1629391 4670978 Ajs_1576 Acidovorax sp. JS42 hypothetical protein YP_985845.1 1628873 R 232721 CDS YP_985846.1 121593950 4670556 complement(1629842..1630963) 1 NC_008782.1 hypothetical protein 1630963 4670556 Ajs_1577 Acidovorax sp. JS42 hypothetical protein YP_985846.1 1629842 R 232721 CDS YP_985847.1 121593951 4671533 complement(1631235..1636163) 1 NC_008782.1 PFAM: helicase domain protein; KEGG: dar:Daro_2221 helicase, C-terminal; helicase domain-containing protein 1636163 4671533 Ajs_1578 Acidovorax sp. JS42 helicase domain-containing protein YP_985847.1 1631235 R 232721 CDS YP_985848.1 121593952 4671567 complement(1636599..1636904) 1 NC_008782.1 KEGG: eba:ebB75 hypothetical protein; hypothetical protein 1636904 4671567 Ajs_1579 Acidovorax sp. JS42 hypothetical protein YP_985848.1 1636599 R 232721 CDS YP_985849.1 121593953 4671418 complement(1637058..1637729) 1 NC_008782.1 KEGG: dar:Daro_2229 hypothetical protein; hypothetical protein 1637729 4671418 Ajs_1580 Acidovorax sp. JS42 hypothetical protein YP_985849.1 1637058 R 232721 CDS YP_985850.1 121593954 4671622 complement(1637835..1638521) 1 NC_008782.1 KEGG: dar:Daro_2228 hypothetical protein; hypothetical protein 1638521 4671622 Ajs_1581 Acidovorax sp. JS42 hypothetical protein YP_985850.1 1637835 R 232721 CDS YP_985851.1 121593955 4671648 1638930..1639604 1 NC_008782.1 KEGG: plu:plu1482 hypothetical protein; hypothetical protein 1639604 4671648 Ajs_1582 Acidovorax sp. JS42 hypothetical protein YP_985851.1 1638930 D 232721 CDS YP_985852.1 121593956 4671724 1639601..1640248 1 NC_008782.1 KEGG: eba:ebA2475 hypothetical protein; hypothetical protein 1640248 4671724 Ajs_1583 Acidovorax sp. JS42 hypothetical protein YP_985852.1 1639601 D 232721 CDS YP_985853.1 121593957 4671499 1640335..1641957 1 NC_008782.1 KEGG: rpa:RPA2566 putative EA59 gene protein, phage lambda; putative EA59 gene protein, phage lambda 1641957 4671499 Ajs_1584 Acidovorax sp. JS42 putative EA59 gene protein, phage lambda YP_985853.1 1640335 D 232721 CDS YP_985854.1 121593958 4672068 1641959..1642804 1 NC_008782.1 KEGG: rpa:RPA2567 possible EA31 gene protein, phage lambda; putative EA31 gene protein, phage lambda 1642804 4672068 Ajs_1585 Acidovorax sp. JS42 putative EA31 gene protein, phage lambda YP_985854.1 1641959 D 232721 CDS YP_985855.1 121593959 4672077 1643095..1643709 1 NC_008782.1 KEGG: dar:Daro_2544 hypothetical protein; hypothetical protein 1643709 4672077 Ajs_1586 Acidovorax sp. JS42 hypothetical protein YP_985855.1 1643095 D 232721 CDS YP_985856.1 121593960 4672130 1644072..1644572 1 NC_008782.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: ttj:TTHA1162 excisionase domain protein; DNA-binding domain-containing protein 1644572 4672130 Ajs_1587 Acidovorax sp. JS42 DNA-binding domain-containing protein YP_985856.1 1644072 D 232721 CDS YP_985857.1 121593961 4672160 1644569..1645183 1 NC_008782.1 KEGG: rpc:RPC_4423 hypothetical protein; hypothetical protein 1645183 4672160 Ajs_1588 Acidovorax sp. JS42 hypothetical protein YP_985857.1 1644569 D 232721 CDS YP_985858.1 121593962 4672202 complement(1645266..1645805) 1 NC_008782.1 PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein; histone family protein DNA-binding protein 1645805 4672202 Ajs_1589 Acidovorax sp. JS42 histone family protein DNA-binding protein YP_985858.1 1645266 R 232721 CDS YP_985859.1 121593963 4672261 1645904..1646404 1 NC_008782.1 hypothetical protein 1646404 4672261 Ajs_1590 Acidovorax sp. JS42 hypothetical protein YP_985859.1 1645904 D 232721 CDS YP_985860.1 121593964 4672015 1646489..1648252 1 NC_008782.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_2542 ParB-like partition protein; ParB family protein 1648252 4672015 Ajs_1591 Acidovorax sp. JS42 ParB family protein YP_985860.1 1646489 D 232721 CDS YP_985861.1 121593965 4672274 1648351..1648833 1 NC_008782.1 KEGG: dar:Daro_2541 hypothetical protein; hypothetical protein 1648833 4672274 Ajs_1592 Acidovorax sp. JS42 hypothetical protein YP_985861.1 1648351 D 232721 CDS YP_985862.1 121593966 4672346 1648929..1649372 1 NC_008782.1 KEGG: dar:Daro_2540 hypothetical protein; hypothetical protein 1649372 4672346 Ajs_1593 Acidovorax sp. JS42 hypothetical protein YP_985862.1 1648929 D 232721 CDS YP_985863.1 121593967 4672774 1649384..1650433 1 NC_008782.1 KEGG: dar:Daro_2539 hypothetical protein; hypothetical protein 1650433 4672774 Ajs_1594 Acidovorax sp. JS42 hypothetical protein YP_985863.1 1649384 D 232721 CDS YP_985864.1 121593968 4672779 1650463..1651203 1 NC_008782.1 KEGG: dar:Daro_2538 hypothetical protein; hypothetical protein 1651203 4672779 Ajs_1595 Acidovorax sp. JS42 hypothetical protein YP_985864.1 1650463 D 232721 CDS YP_985865.1 121593969 4672813 1651200..1651916 1 NC_008782.1 KEGG: dar:Daro_2537 hypothetical protein; hypothetical protein 1651916 4672813 Ajs_1596 Acidovorax sp. JS42 hypothetical protein YP_985865.1 1651200 D 232721 CDS YP_985866.1 121593970 4672816 1651970..1652824 1 NC_008782.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_2536 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein 1652824 4672816 Ajs_1597 Acidovorax sp. JS42 UBA/THIF-type NAD/FAD-binding protein YP_985866.1 1651970 D 232721 CDS YP_985867.1 121593971 4672825 1653122..1653475 1 NC_008782.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_B5596 histone-like nucleoid-structuring protein H-NS; nucleoid protein H-NS 1653475 4672825 Ajs_1598 Acidovorax sp. JS42 nucleoid protein H-NS YP_985867.1 1653122 D 232721 CDS YP_985868.1 121593972 4672839 complement(1653480..1654610) 1 NC_008782.1 KEGG: dar:Daro_2218 hypothetical protein; hypothetical protein 1654610 4672839 Ajs_1599 Acidovorax sp. JS42 hypothetical protein YP_985868.1 1653480 R 232721 CDS YP_985869.1 121593973 4672867 1655811..1656842 1 NC_008782.1 KEGG: dar:Daro_2217 hypothetical protein; hypothetical protein 1656842 4672867 Ajs_1600 Acidovorax sp. JS42 hypothetical protein YP_985869.1 1655811 D 232721 CDS YP_985870.1 121593974 4672945 1656839..1657114 1 NC_008782.1 KEGG: dar:Daro_2216 hypothetical protein; hypothetical protein 1657114 4672945 Ajs_1601 Acidovorax sp. JS42 hypothetical protein YP_985870.1 1656839 D 232721 CDS YP_985871.1 121593975 4672973 1657122..1657568 1 NC_008782.1 KEGG: dar:Daro_2528 hypothetical protein; hypothetical protein 1657568 4672973 Ajs_1602 Acidovorax sp. JS42 hypothetical protein YP_985871.1 1657122 D 232721 CDS YP_985872.1 121593976 4672999 1657565..1658110 1 NC_008782.1 KEGG: dar:Daro_2214 hypothetical protein; hypothetical protein 1658110 4672999 Ajs_1603 Acidovorax sp. JS42 hypothetical protein YP_985872.1 1657565 D 232721 CDS YP_985873.1 121593977 4673336 1658441..1659820 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: bxe:Bxe_C0409 putative phage integrase; phage integrase family protein 1659820 4673336 Ajs_1604 Acidovorax sp. JS42 phage integrase family protein YP_985873.1 1658441 D 232721 CDS YP_985874.1 121593978 4673561 1660458..1660709 1 NC_008782.1 hypothetical protein 1660709 4673561 Ajs_1605 Acidovorax sp. JS42 hypothetical protein YP_985874.1 1660458 D 232721 CDS YP_985875.1 121593979 4673622 complement(1660811..1661569) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1661569 4673622 Ajs_1606 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_985875.1 1660811 R 232721 CDS YP_985876.1 121593980 4673681 complement(1661682..1662731) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_2758 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1662731 4673681 Ajs_1607 Acidovorax sp. JS42 extracellular solute-binding protein YP_985876.1 1661682 R 232721 CDS YP_985877.1 121593981 4673710 complement(1662915..1664756) 1 NC_008782.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1664756 4673710 Ajs_1608 Acidovorax sp. JS42 glutaminyl-tRNA synthetase YP_985877.1 1662915 R 232721 CDS YP_985878.1 121593982 4673735 1664969..1665322 1 NC_008782.1 KEGG: pol:Bpro_3349 hypothetical protein; hypothetical protein 1665322 4673735 Ajs_1609 Acidovorax sp. JS42 hypothetical protein YP_985878.1 1664969 D 232721 CDS YP_985879.1 121593983 4674176 1665406..1665852 1 NC_008782.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1665852 4674176 Ajs_1610 Acidovorax sp. JS42 3-dehydroquinate dehydratase YP_985879.1 1665406 D 232721 CDS YP_985880.1 121593984 4674200 1665846..1666736 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1666736 4674200 Ajs_1611 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_985880.1 1665846 D 232721 CDS YP_985881.1 121593985 4674223 1666746..1667171 1 NC_008782.1 PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor; class I peptide chain release factor 1667171 4674223 Ajs_1612 Acidovorax sp. JS42 class I peptide chain release factor YP_985881.1 1666746 D 232721 CDS YP_985882.1 121593986 4674255 1667284..1668120 1 NC_008782.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_1860 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 1668120 4674255 Ajs_1613 Acidovorax sp. JS42 extradiol ring-cleavage dioxygenase III subunit B YP_985882.1 1667284 D 232721 CDS YP_985883.1 121593987 4674140 1668146..1668811 1 NC_008782.1 PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_1861 phospholipase/carboxylesterase; phospholipase/carboxylesterase 1668811 4674140 Ajs_1614 Acidovorax sp. JS42 phospholipase/carboxylesterase YP_985883.1 1668146 D 232721 CDS YP_985884.1 121593988 4674344 1668966..1669892 1 NC_008782.1 KEGG: rfr:Rfer_1149 hypothetical protein; hypothetical protein 1669892 4674344 Ajs_1615 Acidovorax sp. JS42 hypothetical protein YP_985884.1 1668966 D 232721 CDS YP_985885.1 121593989 4674393 complement(1669896..1670363) 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1670363 4674393 Ajs_1616 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_985885.1 1669896 R 232721 CDS YP_985886.1 121593990 4674463 1670420..1673137 1 NC_008782.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 1673137 4674463 Ajs_1617 Acidovorax sp. JS42 2-oxoacid dehydrogenase subunit E1 YP_985886.1 1670420 D 232721 CDS YP_985887.1 121593991 4674502 complement(1673169..1674026) 1 NC_008782.1 PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980; hypothetical protein 1674026 4674502 Ajs_1618 Acidovorax sp. JS42 hypothetical protein YP_985887.1 1673169 R 232721 CDS YP_985888.1 121593992 4674512 complement(1674031..1674813) 1 NC_008782.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase; UDP-2,3-diacylglucosamine hydrolase 1674813 4674512 Ajs_1619 Acidovorax sp. JS42 UDP-2,3-diacylglucosamine hydrolase YP_985888.1 1674031 R 232721 CDS YP_985889.1 121593993 4674558 complement(1674810..1675349) 1 NC_008782.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1675349 4674558 Ajs_1620 Acidovorax sp. JS42 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_985889.1 1674810 R 232721 CDS YP_985890.1 121593994 4674573 complement(1675368..1675955) 1 NC_008782.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein; peptidylprolyl isomerase 1675955 4674573 Ajs_1621 Acidovorax sp. JS42 peptidylprolyl isomerase YP_985890.1 1675368 R 232721 CDS YP_985891.1 121593995 4674698 complement(1676037..1676609) 1 NC_008782.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2; hypothetical protein 1676609 4674698 Ajs_1622 Acidovorax sp. JS42 hypothetical protein YP_985891.1 1676037 R 232721 CDS YP_985892.1 121593996 4674710 1676863..1678239 1 NC_008782.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1678239 cysS 4674710 cysS Acidovorax sp. JS42 cysteinyl-tRNA synthetase YP_985892.1 1676863 D 232721 CDS YP_985893.1 121593997 4674028 1678285..1678944 1 NC_008782.1 PFAM: HhH-GPD family protein; KEGG: rfr:Rfer_1350 HhH-GPD; HhH-GPD family protein 1678944 4674028 Ajs_1624 Acidovorax sp. JS42 HhH-GPD family protein YP_985893.1 1678285 D 232721 CDS YP_985894.1 121593998 4674034 1678993..1679970 1 NC_008782.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1679970 4674034 Ajs_1625 Acidovorax sp. JS42 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_985894.1 1678993 D 232721 CDS YP_985895.1 121593999 4673996 1682059..1683066 1 NC_008782.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: rfr:Rfer_1352 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase 1683066 4673996 Ajs_1627 Acidovorax sp. JS42 tRNA(Ile)-lysidine synthetase YP_985895.1 1682059 D 232721 CDS YP_985896.1 121594000 4673845 1683104..1684372 1 NC_008782.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1684372 4673845 Ajs_1628 Acidovorax sp. JS42 aspartate kinase YP_985896.1 1683104 D 232721 CDS YP_985897.1 121594001 4673702 complement(1684576..1685055) 1 NC_008782.1 KEGG: rfr:Rfer_1219 hypothetical protein; hypothetical protein 1685055 4673702 Ajs_1629 Acidovorax sp. JS42 hypothetical protein YP_985897.1 1684576 R 232721 CDS YP_985898.1 121594002 4673146 complement(1685111..1687480) 1 NC_008782.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1687480 4673146 Ajs_1630 Acidovorax sp. JS42 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_985898.1 1685111 R 232721 CDS YP_985899.1 121594003 4673169 1687578..1688507 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bte:BTH_I1605 transcriptional regulator MetR; LysR family transcriptional regulator 1688507 4673169 Ajs_1631 Acidovorax sp. JS42 LysR family transcriptional regulator YP_985899.1 1687578 D 232721 CDS YP_985900.1 121594004 4673073 complement(1688554..1689414) 1 NC_008782.1 KEGG: bur:Bcep18194_B1614 PEP phosphonomutase; 2,3-dimethylmalate lyase 1689414 4673073 Ajs_1632 Acidovorax sp. JS42 2,3-dimethylmalate lyase YP_985900.1 1688554 R 232721 CDS YP_985901.1 121594005 4673014 complement(1689866..1691068) 1 NC_008782.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: xcv:XCV1160 hypothetical protein; methylitaconate delta2-delta3-isomerase 1691068 4673014 Ajs_1633 Acidovorax sp. JS42 methylitaconate delta2-delta3-isomerase YP_985901.1 1689866 R 232721 CDS YP_985902.1 121594006 4672851 complement(1691082..1693754) 1 NC_008782.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1693754 acnA 4672851 acnA Acidovorax sp. JS42 aconitate hydratase YP_985902.1 1691082 R 232721 CDS YP_985903.1 121594007 4672794 complement(1693861..1695021) 1 NC_008782.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 1695021 4672794 Ajs_1635 Acidovorax sp. JS42 methylcitrate synthase YP_985903.1 1693861 R 232721 CDS YP_985904.1 121594008 4673094 complement(1695018..1695434) 1 NC_008782.1 PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_3513 thioesterase superfamily; thioesterase superfamily protein 1695434 4673094 Ajs_1636 Acidovorax sp. JS42 thioesterase superfamily protein YP_985904.1 1695018 R 232721 CDS YP_985905.1 121594009 4672559 1695536..1697008 1 NC_008782.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rru:Rru_A2316 transcriptional regulator, XRE family; XRE family transcriptional regulator 1697008 4672559 Ajs_1637 Acidovorax sp. JS42 XRE family transcriptional regulator YP_985905.1 1695536 D 232721 CDS YP_985906.1 121594010 4672428 1697145..1697447 1 NC_008782.1 hypothetical protein 1697447 4672428 Ajs_1638 Acidovorax sp. JS42 hypothetical protein YP_985906.1 1697145 D 232721 CDS YP_985907.1 121594011 4672386 complement(1697572..1697997) 1 NC_008782.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4; RNA-binding S4 domain-containing protein 1697997 4672386 Ajs_1639 Acidovorax sp. JS42 RNA-binding S4 domain-containing protein YP_985907.1 1697572 R 232721 CDS YP_985908.1 121594012 4672020 complement(1698038..1699441) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1699441 4672020 Ajs_1640 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_985908.1 1698038 R 232721 CDS YP_985909.1 121594013 4672144 complement(1699614..1700345) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1700345 4672144 Ajs_1641 Acidovorax sp. JS42 two component transcriptional regulator YP_985909.1 1699614 R 232721 CDS YP_985910.1 121594014 4672467 1700448..1701407 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein 1701407 4672467 Ajs_1642 Acidovorax sp. JS42 hypothetical protein YP_985910.1 1700448 D 232721 CDS YP_985911.1 121594015 4672049 1701541..1702092 1 NC_008782.1 KEGG: pol:Bpro_2010 hypothetical protein; hypothetical protein 1702092 4672049 Ajs_1643 Acidovorax sp. JS42 hypothetical protein YP_985911.1 1701541 D 232721 CDS YP_985912.1 121594016 4671900 1702183..1703712 1 NC_008782.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane; hypothetical protein 1703712 4671900 Ajs_1644 Acidovorax sp. JS42 hypothetical protein YP_985912.1 1702183 D 232721 CDS YP_985913.1 121594017 4671818 1703940..1704278 1 NC_008782.1 KEGG: bxe:Bxe_B2979 sigma54 specific transcriptional regulator containing PAS, fis family; hypothetical protein 1704278 4671818 Ajs_1645 Acidovorax sp. JS42 hypothetical protein YP_985913.1 1703940 D 232721 CDS YP_985914.1 121594018 4671788 1704238..1705116 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: bpe:BP3623 putative hydrolase; alpha/beta hydrolase fold protein 1705116 4671788 Ajs_1646 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_985914.1 1704238 D 232721 CDS YP_985915.1 121594019 4671727 1705279..1706238 1 NC_008782.1 PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1362 rhodanese-like; rhodanese domain-containing protein 1706238 4671727 Ajs_1647 Acidovorax sp. JS42 rhodanese domain-containing protein YP_985915.1 1705279 D 232721 CDS YP_985916.1 121594020 4671570 complement(1706309..1706476) 1 NC_008782.1 hypothetical protein 1706476 4671570 Ajs_1648 Acidovorax sp. JS42 hypothetical protein YP_985916.1 1706309 R 232721 CDS YP_985917.1 121594021 4671144 complement(1706496..1707593) 1 NC_008782.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rsp:RSP_2739 hypothetical protein; hypothetical protein 1707593 4671144 Ajs_1649 Acidovorax sp. JS42 hypothetical protein YP_985917.1 1706496 R 232721 CDS YP_985918.1 121594022 4671081 complement(1707701..1708654) 1 NC_008782.1 PFAM: Rhodanese domain protein; KEGG: rsp:RSP_2738 probable rhodanese-related sulfurtransferase; rhodanese domain-containing protein 1708654 4671081 Ajs_1650 Acidovorax sp. JS42 rhodanese domain-containing protein YP_985918.1 1707701 R 232721 CDS YP_985919.1 121594023 4670924 complement(1711239..1712297) 1 NC_008782.1 PFAM: ferrochelatase; KEGG: pol:Bpro_2013 ferrochelatase; ferrochelatase 1712297 4670924 Ajs_1652 Acidovorax sp. JS42 ferrochelatase YP_985919.1 1711239 R 232721 CDS YP_985920.1 121594024 4670830 1712337..1713029 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 1713029 4670830 Ajs_1653 Acidovorax sp. JS42 HAD family hydrolase YP_985920.1 1712337 D 232721 CDS YP_985921.1 121594025 4670746 complement(1713042..1715780) 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pae:PA1429 probable cation-transporting P-type ATPase; HAD superfamily P-type ATPase 1715780 4670746 Ajs_1654 Acidovorax sp. JS42 HAD superfamily P-type ATPase YP_985921.1 1713042 R 232721 CDS YP_985922.1 121594026 4670688 complement(1716127..1716948) 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase; alpha/beta hydrolase fold protein 1716948 4670688 Ajs_1655 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_985922.1 1716127 R 232721 CDS YP_985923.1 121594027 4670607 complement(1716948..1718261) 1 NC_008782.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 1718261 4670607 Ajs_1656 Acidovorax sp. JS42 O-acetylhomoserine aminocarboxypropyltransferase YP_985923.1 1716948 R 232721 CDS YP_985924.1 121594028 4670600 1718360..1718815 1 NC_008782.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain; XRE family transcriptional regulator 1718815 4670600 Ajs_1657 Acidovorax sp. JS42 XRE family transcriptional regulator YP_985924.1 1718360 D 232721 CDS YP_985925.1 121594029 4670993 1718909..1720009 1 NC_008782.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1720009 4670993 Ajs_1658 Acidovorax sp. JS42 chorismate synthase YP_985925.1 1718909 D 232721 CDS YP_985926.1 121594030 4671057 complement(1720086..1720535) 1 NC_008782.1 PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193; transcriptional regulator NrdR 1720535 nrdR 4671057 nrdR Acidovorax sp. JS42 transcriptional regulator NrdR YP_985926.1 1720086 R 232721 CDS YP_985927.1 121594031 4671096 complement(1720548..1721792) 1 NC_008782.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1721792 glyA 4671096 glyA Acidovorax sp. JS42 serine hydroxymethyltransferase YP_985927.1 1720548 R 232721 CDS YP_985928.1 121594032 4671157 complement(1722030..1722869) 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1722869 4671157 Ajs_1661 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_985928.1 1722030 R 232721 CDS YP_985929.1 121594033 4671160 1723588..1727295 1 NC_008782.1 PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748; hypothetical protein 1727295 4671160 Ajs_1662 Acidovorax sp. JS42 hypothetical protein YP_985929.1 1723588 D 232721 CDS YP_985930.1 121594034 4671338 1727504..1730191 1 NC_008782.1 KEGG: rfr:Rfer_2656 hypothetical protein; hypothetical protein 1730191 4671338 Ajs_1663 Acidovorax sp. JS42 hypothetical protein YP_985930.1 1727504 D 232721 CDS YP_985931.1 121594035 4670596 complement(1730261..1730824) 1 NC_008782.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 1730824 4670596 Ajs_1664 Acidovorax sp. JS42 BadM/Rrf2 family transcriptional regulator YP_985931.1 1730261 R 232721 CDS YP_985932.1 121594036 4671524 complement(1730969..1731475) 1 NC_008782.1 hypothetical protein 1731475 4671524 Ajs_1665 Acidovorax sp. JS42 hypothetical protein YP_985932.1 1730969 R 232721 CDS YP_985933.1 121594037 4671327 1731547..1732371 1 NC_008782.1 PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_2850 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1732371 4671327 Ajs_1666 Acidovorax sp. JS42 N-formylglutamate amidohydrolase YP_985933.1 1731547 D 232721 CDS YP_985934.1 121594038 4671251 1732389..1732649 1 NC_008782.1 hypothetical protein 1732649 4671251 Ajs_1667 Acidovorax sp. JS42 hypothetical protein YP_985934.1 1732389 D 232721 CDS YP_985935.1 121594039 4671608 complement(1732680..1733561) 1 NC_008782.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1733561 psd 4671608 psd Acidovorax sp. JS42 phosphatidylserine decarboxylase YP_985935.1 1732680 R 232721 CDS YP_985936.1 121594040 4671739 1733742..1734911 1 NC_008782.1 PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: pol:Bpro_0211 CBS domain containing membrane protein; CBS domain-containing protein 1734911 4671739 Ajs_1669 Acidovorax sp. JS42 CBS domain-containing protein YP_985936.1 1733742 D 232721 CDS YP_985937.1 121594041 4671783 1735148..1735414 1 NC_008782.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1735414 infA 4671783 infA Acidovorax sp. JS42 translation initiation factor IF-1 YP_985937.1 1735148 D 232721 CDS YP_985938.1 121594042 4671830 1735730..1736032 1 NC_008782.1 hypothetical protein 1736032 4671830 Ajs_1671 Acidovorax sp. JS42 hypothetical protein YP_985938.1 1735730 D 232721 CDS YP_985939.1 121594043 4671950 1736179..1736949 1 NC_008782.1 PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624; hypothetical protein 1736949 4671950 Ajs_1672 Acidovorax sp. JS42 hypothetical protein YP_985939.1 1736179 D 232721 CDS YP_985940.1 121594044 4671898 complement(1736999..1737784) 1 NC_008782.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1737784 4671898 Ajs_1673 Acidovorax sp. JS42 PpiC-type peptidyl-prolyl cis-trans isomerase YP_985940.1 1736999 R 232721 CDS YP_985941.1 121594045 4672072 complement(1737852..1738130) 1 NC_008782.1 PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein; transcriptional regulator BolA 1738130 4672072 Ajs_1674 Acidovorax sp. JS42 transcriptional regulator BolA YP_985941.1 1737852 R 232721 CDS YP_985942.1 121594046 4671880 complement(1738127..1738687) 1 NC_008782.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1738687 4671880 Ajs_1675 Acidovorax sp. JS42 intracellular septation protein A YP_985942.1 1738127 R 232721 CDS YP_985943.1 121594047 4671982 complement(1738684..1739097) 1 NC_008782.1 KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 1739097 4671982 Ajs_1676 Acidovorax sp. JS42 methionine-R-sulfoxide reductase YP_985943.1 1738684 R 232721 CDS YP_985944.1 121594048 4672339 complement(1739094..1740581) 1 NC_008782.1 PFAM: protein of unknown function UPF0061; KEGG: rfr:Rfer_2395 protein of unknown function UPF0061; hypothetical protein 1740581 4672339 Ajs_1677 Acidovorax sp. JS42 hypothetical protein YP_985944.1 1739094 R 232721 CDS YP_985945.1 121594049 4672395 1740754..1742391 1 NC_008782.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1742391 4672395 Ajs_1678 Acidovorax sp. JS42 long-chain-fatty-acid--CoA ligase YP_985945.1 1740754 D 232721 CDS YP_985946.1 121594050 4672431 1742529..1743764 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_2391 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1743764 4672431 Ajs_1679 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_985946.1 1742529 D 232721 CDS YP_985947.1 121594051 4672448 1743840..1744793 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2390 inner-membrane translocator; inner-membrane translocator 1744793 4672448 Ajs_1680 Acidovorax sp. JS42 inner-membrane translocator YP_985947.1 1743840 D 232721 CDS YP_985948.1 121594052 4672557 1744800..1746137 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2389 inner-membrane translocator; inner-membrane translocator 1746137 4672557 Ajs_1681 Acidovorax sp. JS42 inner-membrane translocator YP_985948.1 1744800 D 232721 CDS YP_985949.1 121594053 4672591 1746137..1746919 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related; ABC transporter-like protein 1746919 4672591 Ajs_1682 Acidovorax sp. JS42 ABC transporter-like protein YP_985949.1 1746137 D 232721 CDS YP_985950.1 121594054 4672599 1746923..1747618 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related; ABC transporter-like protein 1747618 4672599 Ajs_1683 Acidovorax sp. JS42 ABC transporter-like protein YP_985950.1 1746923 D 232721 CDS YP_985951.1 121594055 4673165 1747811..1749910 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 1749910 4673165 Ajs_1684 Acidovorax sp. JS42 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase YP_985951.1 1747811 D 232721 CDS YP_985952.1 121594056 4672765 1749956..1751131 1 NC_008782.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1751131 4672765 Ajs_1685 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_985952.1 1749956 D 232721 CDS YP_985953.1 121594057 4672576 1751473..1752657 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein; diguanylate cyclase 1752657 4672576 Ajs_1686 Acidovorax sp. JS42 diguanylate cyclase YP_985953.1 1751473 D 232721 CDS YP_985954.1 121594058 4672809 1752727..1754655 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1754655 4672809 Ajs_1687 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_985954.1 1752727 D 232721 CDS YP_985955.1 121594059 4672818 1754716..1755216 1 NC_008782.1 KEGG: reu:Reut_B3490 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1755216 4672818 Ajs_1688 Acidovorax sp. JS42 NAD(P)H dehydrogenase (quinone) YP_985955.1 1754716 D 232721 CDS YP_985956.1 121594060 4672864 complement(1755644..1757215) 1 NC_008782.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1824 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit 1757215 4672864 Ajs_1689 Acidovorax sp. JS42 phosphonate ABC transporter inner membrane subunit YP_985956.1 1755644 R 232721 CDS YP_985957.1 121594061 4672871 complement(1757206..1758039) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1825 ABC transporter related; ABC transporter-like protein 1758039 4672871 Ajs_1690 Acidovorax sp. JS42 ABC transporter-like protein YP_985957.1 1757206 R 232721 CDS YP_985958.1 121594062 4672948 complement(1758161..1759051) 1 NC_008782.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: dar:Daro_1826 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1759051 4672948 Ajs_1691 Acidovorax sp. JS42 phosphonate ABC transporter periplasmic phosphonate-binding protein YP_985958.1 1758161 R 232721 CDS YP_985959.1 121594063 4672978 complement(1759177..1760535) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH2694 transporter; major facilitator superfamily transporter 1760535 4672978 Ajs_1692 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985959.1 1759177 R 232721 CDS YP_985960.1 121594064 4673172 complement(1760620..1761753) 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1761753 4673172 Ajs_1693 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_985960.1 1760620 R 232721 CDS YP_985961.1 121594065 4673167 1762987..1763778 1 NC_008782.1 Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1763778 4673167 Ajs_1695 Acidovorax sp. JS42 gluconate 5-dehydrogenase YP_985961.1 1762987 D 232721 CDS YP_985962.1 121594066 4673397 1763815..1764258 1 NC_008782.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein; hypothetical protein 1764258 4673397 Ajs_1696 Acidovorax sp. JS42 hypothetical protein YP_985962.1 1763815 D 232721 CDS YP_985963.1 121594067 4673471 1764346..1765362 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2491 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1765362 4673471 Ajs_1697 Acidovorax sp. JS42 alcohol dehydrogenase YP_985963.1 1764346 D 232721 CDS YP_985964.1 121594068 4673554 1765359..1765823 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_0671 ElaA protein; GCN5-like N-acetyltransferase 1765823 4673554 Ajs_1698 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_985964.1 1765359 D 232721 CDS YP_985965.1 121594069 4673310 1765872..1766798 1 NC_008782.1 KEGG: rfr:Rfer_2490 putative glutathione S-transferase-related protein; putative glutathione S-transferase-like protein 1766798 4673310 Ajs_1699 Acidovorax sp. JS42 putative glutathione S-transferase-like protein YP_985965.1 1765872 D 232721 CDS YP_985966.1 121594070 4673806 1766833..1767738 1 NC_008782.1 probable dehydrogenase; hypothetical protein 1767738 4673806 Ajs_1700 Acidovorax sp. JS42 hypothetical protein YP_985966.1 1766833 D 232721 CDS YP_985967.1 121594071 4673886 complement(1767849..1768487) 1 NC_008782.1 PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein; hypothetical protein 1768487 4673886 Ajs_1701 Acidovorax sp. JS42 hypothetical protein YP_985967.1 1767849 R 232721 CDS YP_985968.1 121594072 4673883 1768719..1769957 1 NC_008782.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PE00015 putative drug transporter protein, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1769957 4673883 Ajs_1702 Acidovorax sp. JS42 Bcr/CflA subfamily drug resistance transporter YP_985968.1 1768719 D 232721 CDS YP_985969.1 121594073 4673871 1769954..1771360 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB2369 MFS superfamily multidrug efflux transporter; major facilitator superfamily transporter 1771360 4673871 Ajs_1703 Acidovorax sp. JS42 major facilitator superfamily transporter YP_985969.1 1769954 D 232721 CDS YP_985970.1 121594074 4673922 complement(1771506..1772603) 1 NC_008782.1 PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein; hypothetical protein 1772603 4673922 Ajs_1704 Acidovorax sp. JS42 hypothetical protein YP_985970.1 1771506 R 232721 CDS YP_985971.1 121594075 4674657 complement(1772607..1773014) 1 NC_008782.1 KEGG: reu:Reut_A1851 hypothetical protein; hypothetical protein 1773014 4674657 Ajs_1705 Acidovorax sp. JS42 hypothetical protein YP_985971.1 1772607 R 232721 CDS YP_985972.1 121594076 4674471 complement(1773011..1774534) 1 NC_008782.1 PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein 1774534 4674471 Ajs_1706 Acidovorax sp. JS42 hypothetical protein YP_985972.1 1773011 R 232721 CDS YP_985973.1 121594077 4674430 1774586..1776982 1 NC_008782.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1; RNA-binding S1 domain-containing protein 1776982 4674430 Ajs_1707 Acidovorax sp. JS42 RNA-binding S1 domain-containing protein YP_985973.1 1774586 D 232721 CDS YP_985974.1 121594078 4674300 1777055..1777879 1 NC_008782.1 PFAM: HDOD; KEGG: rfr:Rfer_2482 putative signal transduction protein; putative signal transduction protein 1777879 4674300 Ajs_1708 Acidovorax sp. JS42 putative signal transduction protein YP_985974.1 1777055 D 232721 CDS YP_985975.1 121594079 4674199 1777908..1779053 1 NC_008782.1 KEGG: ppu:PP_2344 hypothetical protein; hypothetical protein 1779053 4674199 Ajs_1709 Acidovorax sp. JS42 hypothetical protein YP_985975.1 1777908 D 232721 CDS YP_985976.1 121594080 4673302 complement(1779084..1780535) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sus:Acid_0021 multi-sensor signal transduction histidine kinase; putative PAS/PAC sensor protein 1780535 4673302 Ajs_1710 Acidovorax sp. JS42 putative PAS/PAC sensor protein YP_985976.1 1779084 R 232721 CDS YP_985977.1 121594081 4673300 complement(1780640..1781776) 1 NC_008782.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1781776 4673300 Ajs_1711 Acidovorax sp. JS42 iron-containing alcohol dehydrogenase YP_985977.1 1780640 R 232721 CDS YP_985978.1 121594082 4673297 1781839..1782714 1 NC_008782.1 PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_4183 hydratase/decarboxylase; hydratase/decarboxylase 1782714 4673297 Ajs_1712 Acidovorax sp. JS42 hydratase/decarboxylase YP_985978.1 1781839 D 232721 CDS YP_985979.1 121594083 4673645 1782731..1783720 1 NC_008782.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 1783720 4673645 Ajs_1713 Acidovorax sp. JS42 alpha/beta hydrolase domain-containing protein YP_985979.1 1782731 D 232721 CDS YP_985980.1 121594084 4673557 1783742..1784605 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1784605 4673557 Ajs_1714 Acidovorax sp. JS42 thioesterase superfamily protein YP_985980.1 1783742 D 232721 CDS YP_985981.1 121594085 4673543 complement(1784665..1785600) 1 NC_008782.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rfr:Rfer_2253 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) 1785600 4673543 Ajs_1715 Acidovorax sp. JS42 glycine cleavage T protein (aminomethyl transferase) YP_985981.1 1784665 R 232721 CDS YP_985982.1 121594086 4673507 1785646..1786647 1 NC_008782.1 PFAM: aminodeoxychorismate lyase; KEGG: rfr:Rfer_2254 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1786647 4673507 Ajs_1716 Acidovorax sp. JS42 aminodeoxychorismate lyase YP_985982.1 1785646 D 232721 CDS YP_985983.1 121594087 4673477 1786644..1787297 1 NC_008782.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1787297 tmk 4673477 tmk Acidovorax sp. JS42 thymidylate kinase YP_985983.1 1786644 D 232721 CDS YP_985984.1 121594088 4673253 1787294..1788289 1 NC_008782.1 KEGG: rfr:Rfer_2256 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1788289 4673253 Ajs_1718 Acidovorax sp. JS42 DNA-directed DNA polymerase YP_985984.1 1787294 D 232721 CDS YP_985985.1 121594089 4673116 1788306..1788665 1 NC_008782.1 PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1788665 4673116 Ajs_1719 Acidovorax sp. JS42 type IV pilus assembly PilZ YP_985985.1 1788306 D 232721 CDS YP_985986.1 121594090 4672729 1788739..1789548 1 NC_008782.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_2258 TatD-related deoxyribonuclease; TatD family hydrolase 1789548 4672729 Ajs_1720 Acidovorax sp. JS42 TatD family hydrolase YP_985986.1 1788739 D 232721 CDS YP_985987.1 121594091 4672883 1789545..1790231 1 NC_008782.1 PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin; ankyrin 1790231 4672883 Ajs_1721 Acidovorax sp. JS42 ankyrin YP_985987.1 1789545 D 232721 CDS YP_985988.1 121594092 4672674 complement(1790355..1792139) 1 NC_008782.1 KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 1792139 4672674 Ajs_1722 Acidovorax sp. JS42 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_985988.1 1790355 R 232721 CDS YP_985989.1 121594093 4672754 1792252..1793583 1 NC_008782.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1793583 tolB 4672754 tolB Acidovorax sp. JS42 translocation protein TolB YP_985989.1 1792252 D 232721 CDS YP_985990.1 121594094 4672370 1793623..1794165 1 NC_008782.1 TIGRFAM: TonB box domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB; TonB box domain-containing protein 1794165 4672370 Ajs_1724 Acidovorax sp. JS42 TonB box domain-containing protein YP_985990.1 1793623 D 232721 CDS YP_985991.1 121594095 4672012 1794165..1794950 1 NC_008782.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_2094 tetratricopeptide TPR_2; hypothetical protein 1794950 4672012 Ajs_1725 Acidovorax sp. JS42 hypothetical protein YP_985991.1 1794165 D 232721 CDS YP_985992.1 121594096 4672251 1794947..1795729 1 NC_008782.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rfr:Rfer_2095 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 1795729 4672251 Ajs_1726 Acidovorax sp. JS42 UBA/THIF-type NAD/FAD-binding protein YP_985992.1 1794947 D 232721 CDS YP_985993.1 121594097 4671981 complement(1796105..1796374) 1 NC_008782.1 hypothetical protein 1796374 4671981 Ajs_1727 Acidovorax sp. JS42 hypothetical protein YP_985993.1 1796105 R 232721 CDS YP_985994.1 121594098 4671776 complement(1796361..1796789) 1 NC_008782.1 KEGG: eba:ebB20 hypothetical protein; hypothetical protein 1796789 4671776 Ajs_1728 Acidovorax sp. JS42 hypothetical protein YP_985994.1 1796361 R 232721 CDS YP_985995.1 121594099 4671735 complement(1796811..1797251) 1 NC_008782.1 hypothetical protein 1797251 4671735 Ajs_1729 Acidovorax sp. JS42 hypothetical protein YP_985995.1 1796811 R 232721 CDS YP_985996.1 121594100 4671711 complement(1797273..1797983) 1 NC_008782.1 KEGG: tbd:Tbd_2678 hypothetical protein; hypothetical protein 1797983 4671711 Ajs_1730 Acidovorax sp. JS42 hypothetical protein YP_985996.1 1797273 R 232721 CDS YP_985997.1 121594101 4671710 complement(1797986..1798288) 1 NC_008782.1 hypothetical protein 1798288 4671710 Ajs_1731 Acidovorax sp. JS42 hypothetical protein YP_985997.1 1797986 R 232721 CDS YP_985998.1 121594102 4671619 complement(1798285..1798722) 1 NC_008782.1 hypothetical protein 1798722 4671619 Ajs_1732 Acidovorax sp. JS42 hypothetical protein YP_985998.1 1798285 R 232721 CDS YP_985999.1 121594103 4671585 complement(1798805..1799542) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1799542 4671585 Ajs_1733 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_985999.1 1798805 R 232721 CDS YP_986000.1 121594104 4670557 1800834..1802060 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 1802060 4670557 Ajs_1735 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_986000.1 1800834 D 232721 CDS YP_986001.1 121594105 4670995 complement(1802098..1802712) 1 NC_008782.1 KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 1802712 4670995 Ajs_1736 Acidovorax sp. JS42 integrase catalytic subunit YP_986001.1 1802098 R 232721 CDS YP_986002.1 121594106 4670950 complement(1803000..1803251) 1 NC_008782.1 KEGG: pol:Bpro_1532 hypothetical protein; hypothetical protein 1803251 4670950 Ajs_1737 Acidovorax sp. JS42 hypothetical protein YP_986002.1 1803000 R 232721 CDS YP_986003.1 121594107 4670537 1803552..1803707 1 NC_008782.1 KEGG: xcv:XCVc0009 transposase, mutator family; transposase mutator family protein 1803707 4670537 Ajs_1738 Acidovorax sp. JS42 transposase mutator family protein YP_986003.1 1803552 D 232721 CDS YP_986004.1 121594108 4670859 complement(1803720..1804682) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1804682 4670859 Ajs_1739 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_986004.1 1803720 R 232721 CDS YP_986005.1 121594109 4670800 1806941..1807093 1 NC_008782.1 KEGG: bxe:Bxe_A3305 hypothetical protein; hypothetical protein 1807093 4670800 Ajs_1741 Acidovorax sp. JS42 hypothetical protein YP_986005.1 1806941 D 232721 CDS YP_986006.1 121594110 4670785 complement(1807100..1808614) 1 NC_008782.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1808614 4670785 Ajs_1742 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_986006.1 1807100 R 232721 CDS YP_986007.1 121594111 4670725 complement(1808611..1809390) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 1809390 4670725 Ajs_1743 Acidovorax sp. JS42 hydroxyacylglutathione hydrolase YP_986007.1 1808611 R 232721 CDS YP_986008.1 121594112 4670693 1809389..1810168 1 NC_008782.1 PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein; type 11 methyltransferase 1810168 4670693 Ajs_1744 Acidovorax sp. JS42 type 11 methyltransferase YP_986008.1 1809389 D 232721 CDS YP_986009.1 121594113 4670657 1810205..1810651 1 NC_008782.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1810651 rnhA 4670657 rnhA Acidovorax sp. JS42 ribonuclease H YP_986009.1 1810205 D 232721 CDS YP_986010.1 121594114 4670636 complement(1810678..1811013) 1 NC_008782.1 PFAM: Thioredoxin domain; KEGG: pae:PA2694 probable thioredoxin; thioredoxin domain-containing protein 1811013 4670636 Ajs_1746 Acidovorax sp. JS42 thioredoxin domain-containing protein YP_986010.1 1810678 R 232721 CDS YP_986011.1 121594115 4670706 complement(1811096..1812454) 1 NC_008782.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rfr:Rfer_1466 MoeA-like, domain I and II; molybdopterin molybdochelatase 1812454 4670706 Ajs_1747 Acidovorax sp. JS42 molybdopterin molybdochelatase YP_986011.1 1811096 R 232721 CDS YP_986012.1 121594116 4670871 complement(1812481..1813116) 1 NC_008782.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1813116 mobA 4670871 mobA Acidovorax sp. JS42 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_986012.1 1812481 R 232721 CDS YP_986013.1 121594117 4671065 complement(1813177..1814313) 1 NC_008782.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1814313 moaA 4671065 moaA Acidovorax sp. JS42 molybdenum cofactor biosynthesis protein A YP_986013.1 1813177 R 232721 CDS YP_986014.1 121594118 4670561 1814445..1815302 1 NC_008782.1 KEGG: dar:Daro_3326 hypothetical protein; hypothetical protein 1815302 4670561 Ajs_1750 Acidovorax sp. JS42 hypothetical protein YP_986014.1 1814445 D 232721 CDS YP_986015.1 121594119 4671086 complement(1815689..1816768) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1816768 4671086 Ajs_1751 Acidovorax sp. JS42 integrase catalytic subunit YP_986015.1 1815689 R 232721 CDS YP_986016.1 121594120 4671105 complement(1816871..1817950) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1817950 4671105 Ajs_1752 Acidovorax sp. JS42 integrase catalytic subunit YP_986016.1 1816871 R 232721 CDS YP_986017.1 121594121 4671341 complement(1818155..1819138) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 1819138 4671341 Ajs_1753 Acidovorax sp. JS42 transposase, IS4 family protein YP_986017.1 1818155 R 232721 CDS YP_986018.1 121594122 4671238 1819285..1820370 1 NC_008782.1 KEGG: bxe:Bxe_A3516 putative transposase; putative transposase 1820370 4671238 Ajs_1754 Acidovorax sp. JS42 putative transposase YP_986018.1 1819285 D 232721 CDS YP_986019.1 121594123 4671486 complement(1820420..1820980) 1 NC_008782.1 KEGG: pol:Bpro_2081 hypothetical protein; hypothetical protein 1820980 4671486 Ajs_1755 Acidovorax sp. JS42 hypothetical protein YP_986019.1 1820420 R 232721 CDS YP_986020.1 121594124 4671319 complement(1821056..1822489) 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 1822489 4671319 Ajs_1756 Acidovorax sp. JS42 aldehyde dehydrogenase YP_986020.1 1821056 R 232721 CDS YP_986021.1 121594125 4671199 complement(1822597..1824681) 1 NC_008782.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1824681 hppA 4671199 hppA Acidovorax sp. JS42 membrane-bound proton-translocating pyrophosphatase YP_986021.1 1822597 R 232721 CDS YP_986022.1 121594126 4671290 1824891..1825451 1 NC_008782.1 PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase; inorganic diphosphatase 1825451 4671290 Ajs_1758 Acidovorax sp. JS42 inorganic diphosphatase YP_986022.1 1824891 D 232721 CDS YP_986023.1 121594127 4671209 1825667..1826173 1 NC_008782.1 PFAM: CheW domain protein; KEGG: rfr:Rfer_1476 CheW protein; putative CheW protein 1826173 4671209 Ajs_1759 Acidovorax sp. JS42 putative CheW protein YP_986023.1 1825667 D 232721 CDS YP_986024.1 121594128 4671201 complement(1826242..1827462) 1 NC_008782.1 PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482; hypothetical protein 1827462 4671201 Ajs_1760 Acidovorax sp. JS42 hypothetical protein YP_986024.1 1826242 R 232721 CDS YP_986025.1 121594129 4671632 1827768..1829432 1 NC_008782.1 KEGG: rfr:Rfer_1699 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 1829432 4671632 Ajs_1761 Acidovorax sp. JS42 NAD+ synthetase YP_986025.1 1827768 D 232721 CDS YP_986026.1 121594130 4671706 1829500..1829838 1 NC_008782.1 PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_1700 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1829838 4671706 Ajs_1762 Acidovorax sp. JS42 nitrogen regulatory protein P-II YP_986026.1 1829500 D 232721 CDS YP_986027.1 121594131 4671785 complement(1829889..1830482) 1 NC_008782.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730; hypothetical protein 1830482 4671785 Ajs_1763 Acidovorax sp. JS42 hypothetical protein YP_986027.1 1829889 R 232721 CDS YP_986028.1 121594132 4674244 complement(1830475..1830876) 1 NC_008782.1 PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase 1830876 4674244 Ajs_1764 Acidovorax sp. JS42 diacylglycerol kinase YP_986028.1 1830475 R 232721 CDS YP_986029.1 121594133 4671886 complement(1830973..1831533) 1 NC_008782.1 PFAM: RDD domain containing protein; KEGG: rfr:Rfer_3318 RDD; RDD domain-containing protein 1831533 4671886 Ajs_1765 Acidovorax sp. JS42 RDD domain-containing protein YP_986029.1 1830973 R 232721 CDS YP_986030.1 121594134 4671922 complement(1831564..1832388) 1 NC_008782.1 KEGG: pol:Bpro_2314 putative transmembrane protein; hypothetical protein 1832388 4671922 Ajs_1766 Acidovorax sp. JS42 hypothetical protein YP_986030.1 1831564 R 232721 CDS YP_986031.1 121594135 4671862 complement(1832402..1832863) 1 NC_008782.1 KEGG: pol:Bpro_2315 putative transmembrane protein; hypothetical protein 1832863 4671862 Ajs_1767 Acidovorax sp. JS42 hypothetical protein YP_986031.1 1832402 R 232721 CDS YP_986032.1 121594136 4671848 complement(1832860..1833426) 1 NC_008782.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 1833426 4671848 Ajs_1768 Acidovorax sp. JS42 RNA polymerase factor sigma-70 YP_986032.1 1832860 R 232721 CDS YP_986033.1 121594137 4671858 1833713..1835509 1 NC_008782.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 1835509 4671858 Ajs_1769 Acidovorax sp. JS42 acetolactate synthase 3 catalytic subunit YP_986033.1 1833713 D 232721 CDS YP_986034.1 121594138 4671850 1835650..1836141 1 NC_008782.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1836141 ilvH 4671850 ilvH Acidovorax sp. JS42 acetolactate synthase 3 regulatory subunit YP_986034.1 1835650 D 232721 CDS YP_986035.1 121594139 4671488 1836199..1837215 1 NC_008782.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1837215 4671488 Ajs_1771 Acidovorax sp. JS42 ketol-acid reductoisomerase YP_986035.1 1836199 D 232721 CDS YP_986036.1 121594140 4671482 1837391..1838224 1 NC_008782.1 KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1838224 4671482 Ajs_1772 Acidovorax sp. JS42 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_986036.1 1837391 D 232721 CDS YP_986037.1 121594141 4672200 1838447..1840120 1 NC_008782.1 KEGG: pol:Bpro_2321 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 1840120 4672200 Ajs_1773 Acidovorax sp. JS42 2-isopropylmalate synthase YP_986037.1 1838447 D 232721 CDS YP_986038.1 121594142 4672232 1840156..1841694 1 NC_008782.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1841694 4672232 Ajs_1774 Acidovorax sp. JS42 2-isopropylmalate synthase YP_986038.1 1840156 D 232721 CDS YP_986039.1 121594143 4672263 1841809..1842891 1 NC_008782.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; murein-DD-endopeptidase 1842891 4672263 Ajs_1775 Acidovorax sp. JS42 murein-DD-endopeptidase YP_986039.1 1841809 D 232721 CDS YP_986040.1 121594144 4672367 complement(1842963..1843775) 1 NC_008782.1 PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family; IclR family transcriptional regulator 1843775 4672367 Ajs_1776 Acidovorax sp. JS42 IclR family transcriptional regulator YP_986040.1 1842963 R 232721 CDS YP_986041.1 121594145 4672420 complement(1844011..1845285) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3328 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1845285 4672420 Ajs_1777 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_986041.1 1844011 R 232721 CDS YP_986042.1 121594146 4672045 complement(1845317..1846402) 1 NC_008782.1 PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_3327 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 1846402 4672045 Ajs_1778 Acidovorax sp. JS42 aminoglycoside phosphotransferase YP_986042.1 1845317 R 232721 CDS YP_986043.1 121594147 4672460 complement(1846527..1847246) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 1847246 4672460 Ajs_1779 Acidovorax sp. JS42 Crp/FNR family transcriptional regulator YP_986043.1 1846527 R 232721 CDS YP_986044.1 121594148 4673259 complement(1847449..1848216) 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2958 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1848216 4673259 Ajs_1780 Acidovorax sp. JS42 enoyl-CoA hydratase/isomerase YP_986044.1 1847449 R 232721 CDS YP_986045.1 121594149 4672654 complement(1848239..1849759) 1 NC_008782.1 converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase 1849759 4672654 Ajs_1781 Acidovorax sp. JS42 3-hydroxy-acyl-CoA dehydrogenase YP_986045.1 1848239 R 232721 CDS YP_986046.1 121594150 4672594 1849836..1851902 1 NC_008782.1 KEGG: rfr:Rfer_3583 hypothetical protein; hypothetical protein 1851902 4672594 Ajs_1782 Acidovorax sp. JS42 hypothetical protein YP_986046.1 1849836 D 232721 CDS YP_986047.1 121594151 4672601 complement(1851933..1852862) 1 NC_008782.1 KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1852862 4672601 Ajs_1783 Acidovorax sp. JS42 thiamine-phosphate pyrophosphorylase YP_986047.1 1851933 R 232721 CDS YP_986048.1 121594152 4672566 complement(1852865..1853677) 1 NC_008782.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1853677 thiG 4672566 thiG Acidovorax sp. JS42 thiazole synthase YP_986048.1 1852865 R 232721 CDS YP_986049.1 121594153 4672540 complement(1853689..1853886) 1 NC_008782.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 1853886 4672540 Ajs_1785 Acidovorax sp. JS42 thiamine biosynthesis protein ThiS YP_986049.1 1853689 R 232721 CDS YP_986050.1 121594154 4672518 complement(1853883..1855007) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_2464 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1855007 4672518 Ajs_1786 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_986050.1 1853883 R 232721 CDS YP_986051.1 121594155 4672826 1855225..1856151 1 NC_008782.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mfa:Mfla_0997 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1856151 4672826 Ajs_1787 Acidovorax sp. JS42 phosphomethylpyrimidine kinase YP_986051.1 1855225 D 232721 CDS YP_986052.1 121594156 4672888 complement(1856219..1856695) 1 NC_008782.1 PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: dps:DP2276 hypothetical protein; SH3 type 3 domain-containing protein 1856695 4672888 Ajs_1788 Acidovorax sp. JS42 SH3 type 3 domain-containing protein YP_986052.1 1856219 R 232721 CDS YP_986053.1 121594157 4672906 complement(1856955..1858019) 1 NC_008782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_2452 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1858019 4672906 Ajs_1789 Acidovorax sp. JS42 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_986053.1 1856955 R 232721 CDS YP_986054.1 121594158 4672957 complement(1858045..1858368) 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1858368 4672957 Ajs_1790 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_986054.1 1858045 R 232721 CDS YP_986055.1 121594159 4673024 complement(1858471..1859859) 1 NC_008782.1 KEGG: rfr:Rfer_2460 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; sulfate adenylyltransferase subunit 1 1859859 4673024 Ajs_1791 Acidovorax sp. JS42 sulfate adenylyltransferase subunit 1 YP_986055.1 1858471 R 232721 CDS YP_986056.1 121594160 4673042 complement(1859859..1860791) 1 NC_008782.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1860791 4673042 Ajs_1792 Acidovorax sp. JS42 sulfate adenylyltransferase subunit 2 YP_986056.1 1859859 R 232721 CDS YP_986057.1 121594161 4673058 complement(1860853..1861494) 1 NC_008782.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mfa:Mfla_1679 phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase 1861494 4673058 Ajs_1793 Acidovorax sp. JS42 phosphoadenylylsulfate reductase YP_986057.1 1860853 R 232721 CDS YP_986058.1 121594162 4673072 complement(1861491..1861886) 1 NC_008782.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: rfr:Rfer_2457 uncharacterised conserved protein UCP030820; hypothetical protein 1861886 4673072 Ajs_1794 Acidovorax sp. JS42 hypothetical protein YP_986058.1 1861491 R 232721 CDS YP_986059.1 121594163 4672741 complement(1861912..1863699) 1 NC_008782.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite/sulfite reductase hemoprotein subunit beta 1863699 4672741 Ajs_1795 Acidovorax sp. JS42 nitrite/sulfite reductase hemoprotein subunit beta YP_986059.1 1861912 R 232721 CDS YP_986060.1 121594164 4673170 complement(1863853..1865772) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752; hypothetical protein 1865772 4673170 Ajs_1796 Acidovorax sp. JS42 hypothetical protein YP_986060.1 1863853 R 232721 CDS YP_986061.1 121594165 4673955 complement(1865808..1866473) 1 NC_008782.1 PFAM: protein of unknown function UPF0126; KEGG: dar:Daro_3213 hypothetical protein; hypothetical protein 1866473 4673955 Ajs_1797 Acidovorax sp. JS42 hypothetical protein YP_986061.1 1865808 R 232721 CDS YP_986062.1 121594166 4673902 complement(1866882..1867154) 1 NC_008782.1 PFAM: Fe(II) trafficking protein YggX; KEGG: rfr:Rfer_2102 Fe(II) trafficking protein YggX; hypothetical protein 1867154 4673902 Ajs_1798 Acidovorax sp. JS42 hypothetical protein YP_986062.1 1866882 R 232721 CDS YP_986063.1 121594167 4673197 1867242..1868312 1 NC_008782.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 1868312 4673197 Ajs_1799 Acidovorax sp. JS42 sulfate ABC transporter periplasmic sulfate-binding protein YP_986063.1 1867242 D 232721 CDS YP_986064.1 121594168 4673109 1868514..1869212 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_B0273 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 1869212 4673109 Ajs_1800 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_986064.1 1868514 D 232721 CDS YP_986065.1 121594169 4673125 1869256..1870722 1 NC_008782.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: cvi:CV3481 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase type I 1870722 4673125 Ajs_1801 Acidovorax sp. JS42 deoxyribodipyrimidine photo-lyase type I YP_986065.1 1869256 D 232721 CDS YP_986066.1 121594170 4673483 1871054..1872670 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: rru:Rru_A3316 phage integrase; phage integrase family protein 1872670 4673483 Ajs_1802 Acidovorax sp. JS42 phage integrase family protein YP_986066.1 1871054 D 232721 CDS YP_986067.1 121594171 4673781 1873051..1873632 1 NC_008782.1 PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: bte:BTH_I3231 transposon Tn2501 resolvase; resolvase domain-containing protein 1873632 4673781 Ajs_1803 Acidovorax sp. JS42 resolvase domain-containing protein YP_986067.1 1873051 D 232721 CDS YP_986068.1 121594172 4673823 1874137..1874916 1 NC_008782.1 hypothetical protein 1874916 4673823 Ajs_1804 Acidovorax sp. JS42 hypothetical protein YP_986068.1 1874137 D 232721 CDS YP_986069.1 121594173 4673866 complement(1875801..1876163) 1 NC_008782.1 hypothetical protein 1876163 4673866 Ajs_1805 Acidovorax sp. JS42 hypothetical protein YP_986069.1 1875801 R 232721 CDS YP_986070.1 121594174 4673937 1876844..1877104 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: spt:SPA4290 subunit S of type I restriction-modification system; XRE family transcriptional regulator 1877104 4673937 Ajs_1806 Acidovorax sp. JS42 XRE family transcriptional regulator YP_986070.1 1876844 D 232721 CDS YP_986071.1 121594175 4673868 complement(1877112..1877930) 1 NC_008782.1 hypothetical protein 1877930 4673868 Ajs_1807 Acidovorax sp. JS42 hypothetical protein YP_986071.1 1877112 R 232721 CDS YP_986072.1 121594176 4674040 complement(1878688..1879488) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR; enoyl-[acyl-carrier-protein] reductase 1879488 4674040 Ajs_1809 Acidovorax sp. JS42 enoyl-[acyl-carrier-protein] reductase YP_986072.1 1878688 R 232721 CDS YP_986073.1 121594177 4674691 1879578..1881452 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 5; KEGG: rfr:Rfer_2128 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1881452 4674691 Ajs_1810 Acidovorax sp. JS42 extracellular solute-binding protein YP_986073.1 1879578 D 232721 CDS YP_986074.1 121594178 4674620 1881460..1882497 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2129 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1882497 4674620 Ajs_1811 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_986074.1 1881460 D 232721 CDS YP_986075.1 121594179 4674116 1882501..1883598 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2130 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1883598 4674116 Ajs_1812 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_986075.1 1882501 D 232721 CDS YP_986076.1 121594180 4674482 1883620..1885257 1 NC_008782.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related; ABC transporter-like protein 1885257 4674482 Ajs_1813 Acidovorax sp. JS42 ABC transporter-like protein YP_986076.1 1883620 D 232721 CDS YP_986077.1 121594181 4674404 1885585..1886751 1 NC_008782.1 KEGG: pol:Bpro_3517 putative lipoprotein; putative lipoprotein 1886751 4674404 Ajs_1814 Acidovorax sp. JS42 putative lipoprotein YP_986077.1 1885585 D 232721 CDS YP_986078.1 121594182 4674382 1886829..1887656 1 NC_008782.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; hydroxypyruvate isomerase 1887656 4674382 Ajs_1815 Acidovorax sp. JS42 hydroxypyruvate isomerase YP_986078.1 1886829 D 232721 CDS YP_986079.1 121594183 4674316 complement(1888042..1888908) 1 NC_008782.1 PFAM: UspA domain protein; KEGG: bbr:BB3577 hypothetical protein; UspA domain-containing protein 1888908 4674316 Ajs_1816 Acidovorax sp. JS42 UspA domain-containing protein YP_986079.1 1888042 R 232721 CDS YP_986080.1 121594184 4674163 complement(1889057..1889989) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpe:BP1820 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 1889989 4674163 Ajs_1817 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986080.1 1889057 R 232721 CDS YP_986081.1 121594185 4674167 1890086..1891438 1 NC_008782.1 PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein; hypothetical protein 1891438 4674167 Ajs_1818 Acidovorax sp. JS42 hypothetical protein YP_986081.1 1890086 D 232721 CDS YP_986082.1 121594186 4673705 1891448..1891810 1 NC_008782.1 KEGG: bbr:BB3205 hypothetical protein; hypothetical protein 1891810 4673705 Ajs_1819 Acidovorax sp. JS42 hypothetical protein YP_986082.1 1891448 D 232721 CDS YP_986083.1 121594187 4673600 1891855..1892841 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5400 hypothetical protein; hypothetical protein 1892841 4673600 Ajs_1820 Acidovorax sp. JS42 hypothetical protein YP_986083.1 1891855 D 232721 CDS YP_986084.1 121594188 4673279 complement(1892910..1894055) 1 NC_008782.1 PFAM: protein of unknown function UPF0118; KEGG: pae:PA2651 hypothetical protein; hypothetical protein 1894055 4673279 Ajs_1821 Acidovorax sp. JS42 hypothetical protein YP_986084.1 1892910 R 232721 CDS YP_986085.1 121594189 4673264 1894185..1897061 1 NC_008782.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1897061 sucA 4673264 sucA Acidovorax sp. JS42 2-oxoglutarate dehydrogenase E1 component YP_986085.1 1894185 D 232721 CDS YP_986086.1 121594190 4673187 1897111..1898376 1 NC_008782.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pol:Bpro_2623 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E2 component 1898376 4673187 Ajs_1823 Acidovorax sp. JS42 2-oxoglutarate dehydrogenase E2 component YP_986086.1 1897111 D 232721 CDS YP_986087.1 121594191 4672998 1898466..1899893 1 NC_008782.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1899893 4672998 Ajs_1824 Acidovorax sp. JS42 dihydrolipoamide dehydrogenase YP_986087.1 1898466 D 232721 CDS YP_986088.1 121594192 4672724 1899971..1901074 1 NC_008782.1 PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase; AFG1 family ATPase 1901074 4672724 Ajs_1825 Acidovorax sp. JS42 AFG1 family ATPase YP_986088.1 1899971 D 232721 CDS YP_986089.1 121594193 4672677 1901074..1901760 1 NC_008782.1 KEGG: pol:Bpro_2620 hypothetical protein; hypothetical protein 1901760 4672677 Ajs_1826 Acidovorax sp. JS42 hypothetical protein YP_986089.1 1901074 D 232721 CDS YP_986090.1 121594194 4672492 complement(1901820..1902623) 1 NC_008782.1 PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 1902623 4672492 Ajs_1827 Acidovorax sp. JS42 protein phosphatase 2C domain-containing protein YP_986090.1 1901820 R 232721 CDS YP_986091.1 121594195 4672506 1902794..1904860 1 NC_008782.1 SMART: helicase c2; KEGG: rfr:Rfer_2316 helicase C2; helicase c2 1904860 4672506 Ajs_1828 Acidovorax sp. JS42 helicase c2 YP_986091.1 1902794 D 232721 CDS YP_986092.1 121594196 4672544 complement(1904823..1905725) 1 NC_008782.1 KEGG: pol:Bpro_2616 putative transmembrane protein; hypothetical protein 1905725 4672544 Ajs_1829 Acidovorax sp. JS42 hypothetical protein YP_986092.1 1904823 R 232721 CDS YP_986093.1 121594197 4672570 1905731..1909294 1 NC_008782.1 KEGG: rfr:Rfer_2040 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1909294 4672570 Ajs_1830 Acidovorax sp. JS42 DNA polymerase III subunit alpha YP_986093.1 1905731 D 232721 CDS YP_986094.1 121594198 4672584 1909333..1909740 1 NC_008782.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1909740 clpS 4672584 clpS Acidovorax sp. JS42 ATP-dependent Clp protease adaptor protein ClpS YP_986094.1 1909333 D 232721 CDS YP_986095.1 121594199 4672612 1909800..1912148 1 NC_008782.1 KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit clpA 1912148 4672612 Ajs_1832 Acidovorax sp. JS42 ATP-dependent Clp protease, ATP-binding subunit clpA YP_986095.1 1909800 D 232721 CDS YP_986096.1 121594200 4672636 1912399..1913007 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family; TetR family transcriptional regulator 1913007 4672636 Ajs_1833 Acidovorax sp. JS42 TetR family transcriptional regulator YP_986096.1 1912399 D 232721 CDS YP_986097.1 121594201 4672032 1913004..1914155 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein; RND family efflux transporter MFP subunit 1914155 4672032 Ajs_1834 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_986097.1 1913004 D 232721 CDS YP_986098.1 121594202 4672327 1914152..1915351 1 NC_008782.1 PFAM: protein of unknown function DUF214; KEGG: net:Neut_1935 protein of unknown function DUF214; hypothetical protein 1915351 4672327 Ajs_1835 Acidovorax sp. JS42 hypothetical protein YP_986098.1 1914152 D 232721 CDS YP_986099.1 121594203 4672008 1915362..1916072 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase; ABC transporter-like protein 1916072 4672008 Ajs_1836 Acidovorax sp. JS42 ABC transporter-like protein YP_986099.1 1915362 D 232721 CDS YP_986100.1 121594204 4671977 complement(1916165..1917589) 1 NC_008782.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rfr:Rfer_0327 lytic murein transglycosylase; lytic murein transglycosylase 1917589 4671977 Ajs_1837 Acidovorax sp. JS42 lytic murein transglycosylase YP_986100.1 1916165 R 232721 CDS YP_986101.1 121594205 4672099 1917634..1919073 1 NC_008782.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1919073 sbcB 4672099 sbcB Acidovorax sp. JS42 exonuclease I YP_986101.1 1917634 D 232721 CDS YP_986102.1 121594206 4671872 1919082..1919966 1 NC_008782.1 PFAM: Silent information regulator protein Sir2; KEGG: xcb:XC_0318 NAD-dependent deacetylase; silent information regulator protein Sir2 1919966 4671872 Ajs_1839 Acidovorax sp. JS42 silent information regulator protein Sir2 YP_986102.1 1919082 D 232721 CDS YP_986103.1 121594207 4671957 1920037..1922040 1 NC_008782.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reu:Reut_A1778 helix-turn-helix, fis-type; Fis family GAF modulated sigma54 specific transcriptional regulator 1922040 4671957 Ajs_1840 Acidovorax sp. JS42 Fis family GAF modulated sigma54 specific transcriptional regulator YP_986103.1 1920037 D 232721 CDS YP_986104.1 121594208 4671429 complement(1922296..1922643) 1 NC_008782.1 KEGG: pol:Bpro_2487 hypothetical protein; hypothetical protein 1922643 4671429 Ajs_1841 Acidovorax sp. JS42 hypothetical protein YP_986104.1 1922296 R 232721 CDS YP_986105.1 121594209 4671472 complement(1922640..1925678) 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2486 transposase Tn3; transposase Tn3 family protein 1925678 4671472 Ajs_1842 Acidovorax sp. JS42 transposase Tn3 family protein YP_986105.1 1922640 R 232721 CDS YP_986106.1 121594210 4670590 complement(1926335..1927159) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit 1927159 4670590 Ajs_1844 Acidovorax sp. JS42 integrase catalytic subunit YP_986106.1 1926335 R 232721 CDS YP_986107.1 121594211 4671237 complement(1927207..1927485) 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein 1927485 4671237 Ajs_1845 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_986107.1 1927207 R 232721 CDS YP_986108.1 121594212 4671276 1927593..1927952 1 NC_008782.1 KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein 1927952 4671276 Ajs_1846 Acidovorax sp. JS42 hypothetical protein YP_986108.1 1927593 D 232721 CDS YP_986109.1 121594213 4671292 1928110..1929465 1 NC_008782.1 PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 probable cobalt-zinc-cadmium outer membrane resistance protein; outer membrane efflux protein 1929465 4671292 Ajs_1847 Acidovorax sp. JS42 outer membrane efflux protein YP_986109.1 1928110 D 232721 CDS YP_986110.1 121594214 4671302 1929468..1931084 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5981 membrane fusion protein cluster 2; RND family efflux transporter MFP subunit 1931084 4671302 Ajs_1848 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_986110.1 1929468 D 232721 CDS YP_986111.1 121594215 4671335 1931100..1934288 1 NC_008782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5980 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1934288 4671335 Ajs_1849 Acidovorax sp. JS42 CzcA family heavy metal efflux protein YP_986111.1 1931100 D 232721 CDS YP_986112.1 121594216 4671363 1934352..1934732 1 NC_008782.1 KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein 1934732 4671363 Ajs_1850 Acidovorax sp. JS42 hypothetical protein YP_986112.1 1934352 D 232721 CDS YP_986113.1 121594217 4671545 complement(1935233..1935721) 1 NC_008782.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: cvi:CV1153 probable transcriptional regulator, MerR family; MerR family transcriptional regulator 1935721 4671545 Ajs_1851 Acidovorax sp. JS42 MerR family transcriptional regulator YP_986113.1 1935233 R 232721 CDS YP_986114.1 121594218 4670984 1936716..1939004 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 family protein 1939004 4670984 Ajs_1853 Acidovorax sp. JS42 transposase Tn3 family protein YP_986114.1 1936716 D 232721 CDS YP_986115.1 121594219 4670589 complement(1939130..1939867) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1939867 4670589 Ajs_1854 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_986115.1 1939130 R 232721 CDS YP_986116.1 121594220 4670579 complement(1939904..1941427) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 1941427 4670579 Ajs_1855 Acidovorax sp. JS42 integrase catalytic subunit YP_986116.1 1939904 R 232721 CDS YP_986117.1 121594221 4670646 complement(1942832..1943149) 1 NC_008782.1 KEGG: eba:ebA2165 hypothetical protein; hypothetical protein 1943149 4670646 Ajs_1857 Acidovorax sp. JS42 hypothetical protein YP_986117.1 1942832 R 232721 CDS YP_986118.1 121594222 4670767 complement(1943299..1944963) 1 NC_008782.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ppu:PP_0024 membrane protein, putative; phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase 1944963 4670767 Ajs_1858 Acidovorax sp. JS42 phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase YP_986118.1 1943299 R 232721 CDS YP_986119.1 121594223 4670796 complement(1945078..1945509) 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: bxe:Bxe_A2662 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA 1945509 4670796 Ajs_1859 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_986119.1 1945078 R 232721 CDS YP_986120.1 121594224 4670806 1945732..1946943 1 NC_008782.1 KEGG: pha:PSHAa0354 cell division transporter substrate-binding protein; hypothetical protein 1946943 4670806 Ajs_1860 Acidovorax sp. JS42 hypothetical protein YP_986120.1 1945732 D 232721 CDS YP_986121.1 121594225 4670821 1946960..1947619 1 NC_008782.1 KEGG: ter:Tery_0707 stress protein; hypothetical protein 1947619 4670821 Ajs_1861 Acidovorax sp. JS42 hypothetical protein YP_986121.1 1946960 D 232721 CDS YP_986122.1 121594226 4670849 1947628..1948608 1 NC_008782.1 hypothetical protein 1948608 4670849 Ajs_1862 Acidovorax sp. JS42 hypothetical protein YP_986122.1 1947628 D 232721 CDS YP_986123.1 121594227 4670908 1948687..1949772 1 NC_008782.1 KEGG: bxe:Bxe_A3516 putative transposase; putative transposase 1949772 4670908 Ajs_1863 Acidovorax sp. JS42 putative transposase YP_986123.1 1948687 D 232721 CDS YP_986124.1 121594228 4670939 1949775..1950590 1 NC_008782.1 KEGG: xom:XOO_2697 hypothetical protein; hypothetical protein 1950590 4670939 Ajs_1864 Acidovorax sp. JS42 hypothetical protein YP_986124.1 1949775 D 232721 CDS YP_986125.1 121594229 4670985 1950627..1951790 1 NC_008782.1 PFAM: Patatin; KEGG: nha:Nham_3555 patatin; patatin 1951790 4670985 Ajs_1865 Acidovorax sp. JS42 patatin YP_986125.1 1950627 D 232721 CDS YP_986126.1 121594230 4670991 1951883..1952227 1 NC_008782.1 KEGG: rpd:RPD_2132 hypothetical protein; putative sigma E regulatory protein, MucB/RseB 1952227 4670991 Ajs_1866 Acidovorax sp. JS42 putative sigma E regulatory protein, MucB/RseB YP_986126.1 1951883 D 232721 CDS YP_986127.1 121594231 4671010 complement(1952208..1953434) 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1953434 4671010 Ajs_1867 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_986127.1 1952208 R 232721 CDS YP_986128.1 121594232 4671074 complement(1955051..1955650) 1 NC_008782.1 KEGG: reu:Reut_A3332 hypothetical protein; membrane protein 1955650 4671074 Ajs_1869 Acidovorax sp. JS42 membrane protein YP_986128.1 1955051 R 232721 CDS YP_986129.1 121594233 4671093 complement(1955963..1957051) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 1957051 4671093 Ajs_1871 Acidovorax sp. JS42 transposase, IS4 family protein YP_986129.1 1955963 R 232721 CDS YP_986130.1 121594234 4671095 complement(1957134..1957610) 1 NC_008782.1 KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein 1957610 4671095 Ajs_1872 Acidovorax sp. JS42 hypothetical protein YP_986130.1 1957134 R 232721 CDS YP_986131.1 121594235 4671140 complement(1957630..1958301) 1 NC_008782.1 KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein 1958301 4671140 Ajs_1873 Acidovorax sp. JS42 PAP2 (acid phosphatase) superfamily protein-like protein YP_986131.1 1957630 R 232721 CDS YP_986132.1 121594236 4671141 1958491..1959570 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1959570 4671141 Ajs_1874 Acidovorax sp. JS42 integrase catalytic subunit YP_986132.1 1958491 D 232721 CDS YP_986133.1 121594237 4671148 1959656..1960156 1 NC_008782.1 KEGG: fal:FRAAL1708 hypothetical protein; hypothetical protein 1960156 4671148 Ajs_1875 Acidovorax sp. JS42 hypothetical protein YP_986133.1 1959656 D 232721 CDS YP_986134.1 121594238 4670571 1960193..1961035 1 NC_008782.1 KEGG: bur:Bcep18194_A5506 hypothetical protein; hypothetical protein 1961035 4670571 Ajs_1876 Acidovorax sp. JS42 hypothetical protein YP_986134.1 1960193 D 232721 CDS YP_986135.1 121594239 4671152 1961442..1962671 1 NC_008782.1 KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 1962671 4671152 Ajs_1877 Acidovorax sp. JS42 transposase Tn3 YP_986135.1 1961442 D 232721 CDS YP_986136.1 121594240 4671159 complement(1962744..1965386) 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sal:Sala_2582 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1965386 4671159 Ajs_1878 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_986136.1 1962744 R 232721 CDS YP_986137.1 121594241 4671161 1965565..1966851 1 NC_008782.1 PFAM: sodium/calcium exchanger membrane region; KEGG: dvu:DVU2617 sodium/calcium exchanger family protein; sodium/calcium exchanger membrane region 1966851 4671161 Ajs_1879 Acidovorax sp. JS42 sodium/calcium exchanger membrane region YP_986137.1 1965565 D 232721 CDS YP_986138.1 121594242 4671170 complement(1967219..1967623) 1 NC_008782.1 KEGG: bbr:BB0177 hypothetical protein; hypothetical protein 1967623 4671170 Ajs_1880 Acidovorax sp. JS42 hypothetical protein YP_986138.1 1967219 R 232721 CDS YP_986139.1 121594243 4671174 1968234..1969934 1 NC_008782.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RS01673 putative integrase/recombinase protein; phage integrase family protein 1969934 4671174 Ajs_1882 Acidovorax sp. JS42 phage integrase family protein YP_986139.1 1968234 D 232721 CDS YP_986140.1 121594244 4671176 complement(1969947..1970276) 1 NC_008782.1 KEGG: pol:Bpro_2510 transcriptional regulator, XRE family; XRE family transcriptional regulator 1970276 4671176 Ajs_1883 Acidovorax sp. JS42 XRE family transcriptional regulator YP_986140.1 1969947 R 232721 CDS YP_986141.1 121594245 4671256 complement(1970273..1970656) 1 NC_008782.1 PFAM: protein of unknown function DUF891; KEGG: pol:Bpro_2509 protein of unknown function DUF891; hypothetical protein 1970656 4671256 Ajs_1884 Acidovorax sp. JS42 hypothetical protein YP_986141.1 1970273 R 232721 CDS YP_986142.1 121594246 4671457 complement(1971445..1972698) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: reu:Reut_A1625 phage integrase:phage integrase, N-terminal SAM-like; phage integrase family protein 1972698 4671457 Ajs_1886 Acidovorax sp. JS42 phage integrase family protein YP_986142.1 1971445 R 232721 CDS YP_986143.1 121594247 4671543 1972732..1973739 1 NC_008782.1 KEGG: reu:Reut_A1626 hypothetical protein; hypothetical protein 1973739 4671543 Ajs_1887 Acidovorax sp. JS42 hypothetical protein YP_986143.1 1972732 D 232721 CDS YP_986144.1 121594248 4671563 complement(1973823..1974203) 1 NC_008782.1 PFAM: protein of unknown function DUF779; KEGG: aeh:Mlg_2727 protein of unknown function DUF779; hypothetical protein 1974203 4671563 Ajs_1888 Acidovorax sp. JS42 hypothetical protein YP_986144.1 1973823 R 232721 CDS YP_986145.1 121594249 4671294 complement(1974225..1975256) 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmb:BruAb1_0198 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase 1975256 4671294 Ajs_1889 Acidovorax sp. JS42 alcohol dehydrogenase YP_986145.1 1974225 R 232721 CDS YP_986146.1 121594250 4671303 complement(1975352..1976875) 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3678 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase 1976875 4671303 Ajs_1890 Acidovorax sp. JS42 aldehyde dehydrogenase YP_986146.1 1975352 R 232721 CDS YP_986147.1 121594251 4671277 complement(1977165..1978880) 1 NC_008782.1 PFAM: Na+/Pi-cotransporter; KEGG: hch:HCH_00018 Na+/phosphate symporter; Na+/Pi-cotransporter 1978880 4671277 Ajs_1891 Acidovorax sp. JS42 Na+/Pi-cotransporter YP_986147.1 1977165 R 232721 CDS YP_986148.1 121594252 4671229 1979182..1981656 1 NC_008782.1 PFAM: protein of unknown function UPF0118; GAF domain protein; KEGG: nha:Nham_4144 putative GAF sensor protein; putative GAF sensor protein 1981656 4671229 Ajs_1892 Acidovorax sp. JS42 putative GAF sensor protein YP_986148.1 1979182 D 232721 CDS YP_986149.1 121594253 4671420 complement(1981740..1982369) 1 NC_008782.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1982369 upp 4671420 upp Acidovorax sp. JS42 uracil phosphoribosyltransferase YP_986149.1 1981740 R 232721 CDS YP_986150.1 121594254 4671216 complement(1982407..1983381) 1 NC_008782.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_3215 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 1983381 4671216 Ajs_1894 Acidovorax sp. JS42 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_986150.1 1982407 R 232721 CDS YP_986151.1 121594255 4671604 complement(1983579..1984838) 1 NC_008782.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 1984838 4671604 Ajs_1895 Acidovorax sp. JS42 nitric oxide dioxygenase YP_986151.1 1983579 R 232721 CDS YP_986152.1 121594256 4671196 1984965..1986560 1 NC_008782.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 1986560 4671196 Ajs_1896 Acidovorax sp. JS42 anaerobic nitric oxide reductase transcription regulator YP_986152.1 1984965 D 232721 CDS YP_986153.1 121594257 4671649 complement(1986789..1988300) 1 NC_008782.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein 1988300 4671649 Ajs_1897 Acidovorax sp. JS42 hypothetical protein YP_986153.1 1986789 R 232721 CDS YP_986154.1 121594258 4671666 1988382..1989101 1 NC_008782.1 PFAM: protein of unknown function DUF28; KEGG: rfr:Rfer_2075 protein of unknown function DUF28; hypothetical protein 1989101 4671666 Ajs_1898 Acidovorax sp. JS42 hypothetical protein YP_986154.1 1988382 D 232721 CDS YP_986155.1 121594259 4671695 1989123..1990409 1 NC_008782.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1990409 4671695 Ajs_1899 Acidovorax sp. JS42 phosphoribosylamine--glycine ligase YP_986155.1 1989123 D 232721 CDS YP_986156.1 121594260 4671825 1990406..1991410 1 NC_008782.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1991410 4671825 Ajs_1900 Acidovorax sp. JS42 coproporphyrinogen III oxidase YP_986156.1 1990406 D 232721 CDS YP_986157.1 121594261 4671835 1991581..1992405 1 NC_008782.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein; iojap-like protein 1992405 4671835 Ajs_1901 Acidovorax sp. JS42 iojap-like protein YP_986157.1 1991581 D 232721 CDS YP_986158.1 121594262 4671911 1992421..1992888 1 NC_008782.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1992888 4671911 Ajs_1902 Acidovorax sp. JS42 rRNA large subunit methyltransferase YP_986158.1 1992421 D 232721 CDS YP_986159.1 121594263 4671902 1992940..1993566 1 NC_008782.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_1974 maf protein; maf protein 1993566 4671902 Ajs_1903 Acidovorax sp. JS42 maf protein YP_986159.1 1992940 D 232721 CDS YP_986160.1 121594264 4674076 complement(1993594..1994358) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0060 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 1994358 4674076 Ajs_1904 Acidovorax sp. JS42 CRP/FNR family transcriptional regulator YP_986160.1 1993594 R 232721 CDS YP_986161.1 121594265 4672705 complement(1994412..1996040) 1 NC_008782.1 PFAM: cytochrome d1, heme region; KEGG: dar:Daro_3260 cytochrome d1, heme region; cytochrome d1 heme subunit 1996040 4672705 Ajs_1905 Acidovorax sp. JS42 cytochrome d1 heme subunit YP_986161.1 1994412 R 232721 CDS YP_986162.1 121594266 4672112 complement(1996105..1997325) 1 NC_008782.1 PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_0071 elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 1997325 4672112 Ajs_1906 Acidovorax sp. JS42 radical SAM domain-containing protein YP_986162.1 1996105 R 232721 CDS YP_986163.1 121594267 4671980 complement(1997328..1997810) 1 NC_008782.1 KEGG: dar:Daro_3267 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator 1997810 4671980 Ajs_1907 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986163.1 1997328 R 232721 CDS YP_986164.1 121594268 4671935 complement(1997800..1998282) 1 NC_008782.1 KEGG: eba:ebA880 NirG protein precursor; AsnC family transcriptional regulator 1998282 4671935 Ajs_1908 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986164.1 1997800 R 232721 CDS YP_986165.1 121594269 4672149 complement(1998269..1999315) 1 NC_008782.1 KEGG: tbd:Tbd_0074 possible transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1999315 4672149 Ajs_1909 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986165.1 1998269 R 232721 CDS YP_986166.1 121594270 4672178 complement(1999319..2000533) 1 NC_008782.1 PFAM: cytochrome d1, heme region; KEGG: eba:ebA883 NirF; cytochrome d1 heme subunit 2000533 4672178 Ajs_1910 Acidovorax sp. JS42 cytochrome d1 heme subunit YP_986166.1 1999319 R 232721 CDS YP_986167.1 121594271 4672210 complement(2000530..2000874) 1 NC_008782.1 KEGG: dar:Daro_3271 hypothetical protein; hypothetical protein 2000874 4672210 Ajs_1911 Acidovorax sp. JS42 hypothetical protein YP_986167.1 2000530 R 232721 CDS YP_986168.1 121594272 4672231 complement(2000894..2002618) 1 NC_008782.1 PFAM: cytochrome d1, heme region; KEGG: eba:ebA888 cytochrome cd1 nitrite reductase precursor; nitrite reductase 2002618 4672231 Ajs_1912 Acidovorax sp. JS42 nitrite reductase YP_986168.1 2000894 R 232721 CDS YP_986169.1 121594273 4672239 2002805..2003653 1 NC_008782.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: net:Neut_1002 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2003653 4672239 Ajs_1913 Acidovorax sp. JS42 uroporphyrin-III C-methyltransferase YP_986169.1 2002805 D 232721 CDS YP_986170.1 121594274 4672260 2003730..2005217 1 NC_008782.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rfr:Rfer_2082 ribonuclease, Rne/Rng family; ribonuclease G 2005217 4672260 Ajs_1914 Acidovorax sp. JS42 ribonuclease G YP_986170.1 2003730 D 232721 CDS YP_986171.1 121594275 4672353 complement(2005623..2006774) 1 NC_008782.1 catalyzes the transfer of an amino moiety; putative aminotransferase 2006774 4672353 Ajs_1915 Acidovorax sp. JS42 putative aminotransferase YP_986171.1 2005623 R 232721 CDS YP_986172.1 121594276 4672392 2006981..2008069 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 2008069 4672392 Ajs_1916 Acidovorax sp. JS42 transposase, IS4 family protein YP_986172.1 2006981 D 232721 CDS YP_986173.1 121594277 4672404 complement(2008240..2009181) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_2112 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein 2009181 4672404 Ajs_1917 Acidovorax sp. JS42 transcriptional regulator CysB-like protein YP_986173.1 2008240 R 232721 CDS YP_986174.1 121594278 4672407 complement(2009256..2009639) 1 NC_008782.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rfr:Rfer_2113 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2009639 4672407 Ajs_1918 Acidovorax sp. JS42 cobalamin (vitamin B12) biosynthesis CbiX protein YP_986174.1 2009256 R 232721 CDS YP_986175.1 121594279 4672409 complement(2009658..2010767) 1 NC_008782.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ; permease 2010767 4672409 Ajs_1919 Acidovorax sp. JS42 permease YP_986175.1 2009658 R 232721 CDS YP_986176.1 121594280 4672416 complement(2010764..2011855) 1 NC_008782.1 PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ; permease 2011855 4672416 Ajs_1920 Acidovorax sp. JS42 permease YP_986176.1 2010764 R 232721 CDS YP_986177.1 121594281 4672422 2011879..2013369 1 NC_008782.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase; PepA aminopeptidase 2013369 4672422 Ajs_1921 Acidovorax sp. JS42 PepA aminopeptidase YP_986177.1 2011879 D 232721 CDS YP_986178.1 121594282 4672427 2013395..2013835 1 NC_008782.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: rfr:Rfer_2117 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC 2013835 4672427 Ajs_1922 Acidovorax sp. JS42 DNA polymerase III chi subunit, HolC YP_986178.1 2013395 D 232721 CDS YP_986179.1 121594283 4672434 2013832..2014263 1 NC_008782.1 KEGG: pol:Bpro_2410 hypothetical protein; hypothetical protein 2014263 4672434 Ajs_1923 Acidovorax sp. JS42 hypothetical protein YP_986179.1 2013832 D 232721 CDS YP_986180.1 121594284 4672439 complement(2014342..2015421) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 2015421 4672439 Ajs_1924 Acidovorax sp. JS42 integrase catalytic subunit YP_986180.1 2014342 R 232721 CDS YP_986181.1 121594285 4672446 2015585..2016718 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2016718 4672446 Ajs_1925 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_986181.1 2015585 D 232721 CDS YP_986182.1 121594286 4672456 complement(2016796..2017803) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2017803 4672456 Ajs_1926 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_986182.1 2016796 R 232721 CDS YP_986183.1 121594287 4672459 2018021..2018578 1 NC_008782.1 KEGG: pol:Bpro_3461 hypothetical protein; hypothetical protein 2018578 4672459 Ajs_1927 Acidovorax sp. JS42 hypothetical protein YP_986183.1 2018021 D 232721 CDS YP_986184.1 121594288 4672465 2018714..2019466 1 NC_008782.1 KEGG: mxa:MXAN_6813 hypothetical protein; hypothetical protein 2019466 4672465 Ajs_1928 Acidovorax sp. JS42 hypothetical protein YP_986184.1 2018714 D 232721 CDS YP_986185.1 121594289 4674529 2019561..2020001 1 NC_008782.1 PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA; UspA domain-containing protein 2020001 4674529 Ajs_1929 Acidovorax sp. JS42 UspA domain-containing protein YP_986185.1 2019561 D 232721 CDS YP_986186.1 121594290 4672751 complement(2020097..2021089) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065; hypothetical protein 2021089 4672751 Ajs_1930 Acidovorax sp. JS42 hypothetical protein YP_986186.1 2020097 R 232721 CDS YP_986187.1 121594291 4672562 complement(2021239..2022423) 1 NC_008782.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2022423 4672562 Ajs_1931 Acidovorax sp. JS42 beta-ketothiolase YP_986187.1 2021239 R 232721 CDS YP_986188.1 121594292 4672927 complement(2022533..2023315) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB2294 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2023315 4672927 Ajs_1932 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_986188.1 2022533 R 232721 CDS YP_986189.1 121594293 4672961 complement(2023347..2024015) 1 NC_008782.1 PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase; ribosomal large subunit pseudouridine synthase A 2024015 4672961 Ajs_1933 Acidovorax sp. JS42 ribosomal large subunit pseudouridine synthase A YP_986189.1 2023347 R 232721 CDS YP_986190.1 121594294 4672969 complement(2024071..2026233) 1 NC_008782.1 KEGG: rfr:Rfer_2766 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase NtrB 2026233 4672969 Ajs_1934 Acidovorax sp. JS42 signal transduction histidine kinase NtrB YP_986190.1 2024071 R 232721 CDS YP_986191.1 121594295 4672989 complement(2026309..2026710) 1 NC_008782.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2026710 4672989 Ajs_1935 Acidovorax sp. JS42 FKBP-type peptidylprolyl isomerase YP_986191.1 2026309 R 232721 CDS YP_986192.1 121594296 4672732 complement(2026781..2029675) 1 NC_008782.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 2029675 4672732 Ajs_1936 Acidovorax sp. JS42 glycine dehydrogenase YP_986192.1 2026781 R 232721 CDS YP_986193.1 121594297 4673053 complement(2029744..2030118) 1 NC_008782.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein; glycine cleavage system H protein 2030118 4673053 Ajs_1937 Acidovorax sp. JS42 glycine cleavage system H protein YP_986193.1 2029744 R 232721 CDS YP_986194.1 121594298 4673061 complement(2030222..2031352) 1 NC_008782.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein; glycine cleavage system T protein 2031352 4673061 Ajs_1938 Acidovorax sp. JS42 glycine cleavage system T protein YP_986194.1 2030222 R 232721 CDS YP_986195.1 121594299 4673064 complement(2031630..2032907) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1869 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 2032907 4673064 Ajs_1939 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_986195.1 2031630 R 232721 CDS YP_986196.1 121594300 4673091 complement(2032990..2033484) 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1870 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 2033484 4673091 Ajs_1940 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_986196.1 2032990 R 232721 CDS YP_986197.1 121594301 4673119 complement(2033562..2034533) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1871 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 2034533 4673119 Ajs_1941 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_986197.1 2033562 R 232721 CDS YP_986198.1 121594302 4673323 2034818..2035285 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4248 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2035285 4673323 Ajs_1942 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986198.1 2034818 D 232721 CDS YP_986199.1 121594303 4673247 complement(2035308..2036432) 1 NC_008782.1 PFAM: TonB-dependent receptor; KEGG: ngo:NGO2093 iron complex outermembrane recepter protein; TonB-dependent receptor 2036432 4673247 Ajs_1943 Acidovorax sp. JS42 TonB-dependent receptor YP_986199.1 2035308 R 232721 CDS YP_986200.1 121594304 4673880 2036753..2037979 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 2037979 4673880 Ajs_1944 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_986200.1 2036753 D 232721 CDS YP_986201.1 121594305 4673916 complement(2038022..2038924) 1 NC_008782.1 PFAM: TonB-dependent receptor, plug; KEGG: pat:Patl_3414 TonB-dependent receptor; TonB-dependent receptor, plug 2038924 4673916 Ajs_1945 Acidovorax sp. JS42 TonB-dependent receptor, plug YP_986201.1 2038022 R 232721 CDS YP_986202.1 121594306 4673974 2039038..2040051 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bpa:BPP2496 putative transcriptional regulator; AraC family transcriptional regulator 2040051 4673974 Ajs_1946 Acidovorax sp. JS42 AraC family transcriptional regulator YP_986202.1 2039038 D 232721 CDS YP_986203.1 121594307 4673892 complement(2040142..2040936) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB3354 putative ABC-transporter ATP-binding component; ABC transporter-like protein 2040936 4673892 Ajs_1947 Acidovorax sp. JS42 ABC transporter-like protein YP_986203.1 2040142 R 232721 CDS YP_986204.1 121594308 4673977 complement(2040953..2041840) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: pau:PA14_14380 putative transmembrane component of ABC transporte; inner-membrane translocator 2041840 4673977 Ajs_1948 Acidovorax sp. JS42 inner-membrane translocator YP_986204.1 2040953 R 232721 CDS YP_986205.1 121594309 4673847 complement(2041946..2042914) 1 NC_008782.1 PFAM: protein of unknown function DUF534; KEGG: pae:PA3836 hypothetical protein; hypothetical protein 2042914 4673847 Ajs_1949 Acidovorax sp. JS42 hypothetical protein YP_986205.1 2041946 R 232721 CDS YP_986206.1 121594310 4673329 complement(2043133..2044839) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rfr:Rfer_3018 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase 2044839 4673329 Ajs_1950 Acidovorax sp. JS42 electron-transferring-flavoprotein dehydrogenase YP_986206.1 2043133 R 232721 CDS YP_986207.1 121594311 4673332 2045403..2046929 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: eca:ECA3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2046929 4673332 Ajs_1951 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_986207.1 2045403 D 232721 CDS YP_986208.1 121594312 4673335 complement(2046999..2048354) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3086 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2048354 4673335 Ajs_1952 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_986208.1 2046999 R 232721 CDS YP_986209.1 121594313 4673338 complement(2048351..2049031) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_A0490 two component response regulator; two component transcriptional regulator 2049031 4673338 Ajs_1953 Acidovorax sp. JS42 two component transcriptional regulator YP_986209.1 2048351 R 232721 CDS YP_986210.1 121594314 4673342 2049173..2049874 1 NC_008782.1 KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein 2049874 4673342 Ajs_1954 Acidovorax sp. JS42 PAP2 (acid phosphatase) superfamily protein-like protein YP_986210.1 2049173 D 232721 CDS YP_986211.1 121594315 4673345 2049921..2051690 1 NC_008782.1 PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase; sulfatase 2051690 4673345 Ajs_1955 Acidovorax sp. JS42 sulfatase YP_986211.1 2049921 D 232721 CDS YP_986212.1 121594316 4673128 complement(2051754..2052335) 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related; peroxidase-like protein 2052335 4673128 Ajs_1956 Acidovorax sp. JS42 peroxidase-like protein YP_986212.1 2051754 R 232721 CDS YP_986213.1 121594317 4673150 complement(2052352..2053035) 1 NC_008782.1 PFAM: DTW domain containing protein; KEGG: tcx:Tcr_0863 DTW; DTW domain-containing protein 2053035 4673150 Ajs_1957 Acidovorax sp. JS42 DTW domain-containing protein YP_986213.1 2052352 R 232721 CDS YP_986214.1 121594318 4673462 complement(2053142..2054593) 1 NC_008782.1 PFAM: Catalase domain protein; KEGG: sco:SCO0379 catalase; catalase 2054593 4673462 Ajs_1958 Acidovorax sp. JS42 catalase YP_986214.1 2053142 R 232721 CDS YP_986215.1 121594319 4673463 2054769..2056049 1 NC_008782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0958 putative NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2056049 4673463 Ajs_1959 Acidovorax sp. JS42 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_986215.1 2054769 D 232721 CDS YP_986216.1 121594320 4673530 complement(2056169..2056714) 1 NC_008782.1 KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator 2056714 4673530 Ajs_1960 Acidovorax sp. JS42 LuxR family transcriptional regulator YP_986216.1 2056169 R 232721 CDS YP_986217.1 121594321 4673572 2056797..2057504 1 NC_008782.1 KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2057504 4673572 Ajs_1961 Acidovorax sp. JS42 3-oxoacid CoA-transferase subunit A YP_986217.1 2056797 D 232721 CDS YP_986218.1 121594322 4673605 2057508..2058146 1 NC_008782.1 KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 2058146 4673605 Ajs_1962 Acidovorax sp. JS42 butyryl-CoA:acetate CoA transferase YP_986218.1 2057508 D 232721 CDS YP_986219.1 121594323 4673608 2058298..2059611 1 NC_008782.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_2755 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2059611 4673608 Ajs_1963 Acidovorax sp. JS42 metal dependent phosphohydrolase YP_986219.1 2058298 D 232721 CDS YP_986220.1 121594324 4673626 2059746..2060747 1 NC_008782.1 KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 2060747 4673626 Ajs_1964 Acidovorax sp. JS42 hypothetical protein YP_986220.1 2059746 D 232721 CDS YP_986221.1 121594325 4673666 2060823..2061590 1 NC_008782.1 KEGG: rfr:Rfer_1225 hypothetical protein; hypothetical protein 2061590 4673666 Ajs_1965 Acidovorax sp. JS42 hypothetical protein YP_986221.1 2060823 D 232721 CDS YP_986222.1 121594326 4673728 2061556..2062965 1 NC_008782.1 KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein 2062965 4673728 Ajs_1966 Acidovorax sp. JS42 hypothetical protein YP_986222.1 2061556 D 232721 CDS YP_986223.1 121594327 4673751 2062962..2066156 1 NC_008782.1 KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2066156 4673751 Ajs_1967 Acidovorax sp. JS42 DNA polymerase III subunit alpha YP_986223.1 2062962 D 232721 CDS YP_986224.1 121594328 4673755 complement(2066220..2067473) 1 NC_008782.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA0938 hypothetical protein; Sel1 domain-containing protein 2067473 4673755 Ajs_1968 Acidovorax sp. JS42 Sel1 domain-containing protein YP_986224.1 2066220 R 232721 CDS YP_986225.1 121594329 4673763 complement(2067509..2069254) 1 NC_008782.1 KEGG: rru:Rru_A0873 hypothetical protein; hypothetical protein 2069254 4673763 Ajs_1969 Acidovorax sp. JS42 hypothetical protein YP_986225.1 2067509 R 232721 CDS YP_986226.1 121594330 4673762 complement(2069349..2069768) 1 NC_008782.1 hypothetical protein 2069768 4673762 Ajs_1970 Acidovorax sp. JS42 hypothetical protein YP_986226.1 2069349 R 232721 CDS YP_986227.1 121594331 4673773 complement(2069835..2070425) 1 NC_008782.1 hypothetical protein 2070425 4673773 Ajs_1971 Acidovorax sp. JS42 hypothetical protein YP_986227.1 2069835 R 232721 CDS YP_986228.1 121594332 4673313 complement(2073679..2075007) 1 NC_008782.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA562 transposase; transposase IS116/IS110/IS902 family protein 2075007 4673313 Ajs_1976 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_986228.1 2073679 R 232721 CDS YP_986229.1 121594333 4673877 complement(2075379..2077232) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: net:Neut_0006 phage integrase family protein; phage integrase family protein 2077232 4673877 Ajs_1977 Acidovorax sp. JS42 phage integrase family protein YP_986229.1 2075379 R 232721 CDS YP_986230.1 121594334 4674070 complement(2077713..2079203) 1 NC_008782.1 KEGG: rfr:Rfer_0598 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate semialdehyde dehydrogenase 2079203 4674070 Ajs_1978 Acidovorax sp. JS42 succinate semialdehyde dehydrogenase YP_986230.1 2077713 R 232721 CDS YP_986231.1 121594335 4674560 2079348..2081972 1 NC_008782.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2081972 alaS 4674560 alaS Acidovorax sp. JS42 alanyl-tRNA synthetase YP_986231.1 2079348 D 232721 CDS YP_986232.1 121594336 4674545 complement(2082120..2083124) 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1673 diguanylate cyclase; diguanylate cyclase 2083124 4674545 Ajs_1980 Acidovorax sp. JS42 diguanylate cyclase YP_986232.1 2082120 R 232721 CDS YP_986233.1 121594337 4674401 complement(2083145..2083900) 1 NC_008782.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 2083900 trmB 4674401 trmB Acidovorax sp. JS42 tRNA (guanine-N(7)-)-methyltransferase YP_986233.1 2083145 R 232721 CDS YP_986234.1 121594338 4674399 complement(2083897..2084868) 1 NC_008782.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rfr:Rfer_1905 glutamate--tRNA ligase; glutamate--tRNA ligase 2084868 4674399 Ajs_1982 Acidovorax sp. JS42 glutamate--tRNA ligase YP_986234.1 2083897 R 232721 CDS YP_986235.1 121594339 4674328 complement(2084865..2085968) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_1906 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2085968 4674328 Ajs_1983 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_986235.1 2084865 R 232721 CDS YP_986236.1 121594340 4674258 complement(2086065..2087003) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1907 transcriptional regulator, LysR family; LysR family transcriptional regulator 2087003 4674258 Ajs_1984 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986236.1 2086065 R 232721 CDS YP_986237.1 121594341 4674285 2087121..2087822 1 NC_008782.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2575 pirin-like; pirin domain-containing protein 2087822 4674285 Ajs_1985 Acidovorax sp. JS42 pirin domain-containing protein YP_986237.1 2087121 D 232721 CDS YP_986238.1 121594342 4674220 2087859..2088272 1 NC_008782.1 PFAM: DoxX family protein; KEGG: rfr:Rfer_2574 DoxX; DoxX family protein 2088272 4674220 Ajs_1986 Acidovorax sp. JS42 DoxX family protein YP_986238.1 2087859 D 232721 CDS YP_986239.1 121594343 4674189 complement(2088344..2089084) 1 NC_008782.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2089084 4674189 Ajs_1987 Acidovorax sp. JS42 arginyl-tRNA-protein transferase YP_986239.1 2088344 R 232721 CDS YP_986240.1 121594344 4674129 complement(2089081..2089845) 1 NC_008782.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2089845 aat 4674129 aat Acidovorax sp. JS42 leucyl/phenylalanyl-tRNA--protein transferase YP_986240.1 2089081 R 232721 CDS YP_986241.1 121594345 4673308 complement(2089884..2090315) 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll1814 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 2090315 4673308 Ajs_1989 Acidovorax sp. JS42 glyoxalase/bleomycin resistance protein/dioxygenase YP_986241.1 2089884 R 232721 CDS YP_986242.1 121594346 4673726 complement(2090402..2091739) 1 NC_008782.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase; glucarate dehydratase 2091739 4673726 Ajs_1990 Acidovorax sp. JS42 glucarate dehydratase YP_986242.1 2090402 R 232721 CDS YP_986243.1 121594347 4673305 complement(2091783..2092769) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2092769 4673305 Ajs_1991 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_986243.1 2091783 R 232721 CDS YP_986244.1 121594348 4673304 complement(2092837..2093790) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4644 hypothetical protein; hypothetical protein 2093790 4673304 Ajs_1992 Acidovorax sp. JS42 hypothetical protein YP_986244.1 2092837 R 232721 CDS YP_986245.1 121594349 4673688 complement(2093860..2094771) 1 NC_008782.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 2094771 4673688 Ajs_1993 Acidovorax sp. JS42 5-dehydro-4-deoxyglucarate dehydratase YP_986245.1 2093860 R 232721 CDS YP_986246.1 121594350 4673684 complement(2094864..2095832) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065; hypothetical protein 2095832 4673684 Ajs_1994 Acidovorax sp. JS42 hypothetical protein YP_986246.1 2094864 R 232721 CDS YP_986247.1 121594351 4673293 complement(2095943..2096749) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfo:Pfl_0823 regulatory protein GntR, HTH; GntR family transcriptional regulator 2096749 4673293 Ajs_1995 Acidovorax sp. JS42 GntR family transcriptional regulator YP_986247.1 2095943 R 232721 CDS YP_986248.1 121594352 4673583 2096846..2098153 1 NC_008782.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pfo:Pfl_3283 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 2098153 4673583 Ajs_1996 Acidovorax sp. JS42 mandelate racemase/muconate lactonizing protein YP_986248.1 2096846 D 232721 CDS YP_986249.1 121594353 4673581 2098185..2099189 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_1635 uncharacterized protein UPF0065; hypothetical protein 2099189 4673581 Ajs_1997 Acidovorax sp. JS42 hypothetical protein YP_986249.1 2098185 D 232721 CDS YP_986250.1 121594354 4673280 2099332..2100894 1 NC_008782.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase; galactarate dehydratase 2100894 4673280 Ajs_1998 Acidovorax sp. JS42 galactarate dehydratase YP_986250.1 2099332 D 232721 CDS YP_986251.1 121594355 4673521 2100944..2102002 1 NC_008782.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RS05371 putative gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase) protein; gluconolactonase 2102002 4673521 Ajs_1999 Acidovorax sp. JS42 gluconolactonase YP_986251.1 2100944 D 232721 CDS YP_986252.1 121594356 4673498 complement(2102288..2102626) 1 NC_008782.1 PFAM: protein of unknown function DUF469; KEGG: psb:Psyr_2112 protein with unknown function DUF469; hypothetical protein 2102626 4673498 Ajs_2000 Acidovorax sp. JS42 hypothetical protein YP_986252.1 2102288 R 232721 CDS YP_986253.1 121594357 4673496 complement(2102694..2103875) 1 NC_008782.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2103875 4673496 Ajs_2001 Acidovorax sp. JS42 tryptophan synthase subunit beta YP_986253.1 2102694 R 232721 CDS YP_986254.1 121594358 4673481 2104126..2104512 1 NC_008782.1 hypothetical protein 2104512 4673481 Ajs_2002 Acidovorax sp. JS42 hypothetical protein YP_986254.1 2104126 D 232721 CDS YP_986255.1 121594359 4673405 complement(2104939..2106291) 1 NC_008782.1 KEGG: vpa:VP1564 hypothetical protein; hypothetical protein 2106291 4673405 Ajs_2003 Acidovorax sp. JS42 hypothetical protein YP_986255.1 2104939 R 232721 CDS YP_986256.1 121594360 4673395 complement(2106468..2107448) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 2107448 4673395 Ajs_2004 Acidovorax sp. JS42 transposase, IS4 family protein YP_986256.1 2106468 R 232721 CDS YP_986257.1 121594361 4673233 complement(2108119..2109006) 1 NC_008782.1 KEGG: pol:Bpro_2471 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2109006 4673233 Ajs_2005 Acidovorax sp. JS42 3-hydroxyisobutyrate dehydrogenase YP_986257.1 2108119 R 232721 CDS YP_986258.1 121594362 4673236 complement(2109099..2109503) 1 NC_008782.1 KEGG: mlo:mlr7906 hypothetical protein; hypothetical protein 2109503 4673236 Ajs_2006 Acidovorax sp. JS42 hypothetical protein YP_986258.1 2109099 R 232721 CDS YP_986259.1 121594363 4673178 complement(2109573..2110739) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB2630 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2110739 4673178 Ajs_2007 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_986259.1 2109573 R 232721 CDS YP_986260.1 121594364 4673199 complement(2110767..2111195) 1 NC_008782.1 PFAM: protein of unknown function DUF1311; KEGG: stm:STM1123 putative periplasmic protein; hypothetical protein 2111195 4673199 Ajs_2008 Acidovorax sp. JS42 hypothetical protein YP_986260.1 2110767 R 232721 CDS YP_986261.1 121594365 4673203 complement(2111234..2112757) 1 NC_008782.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: xac:XAC1312 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 2112757 4673203 Ajs_2009 Acidovorax sp. JS42 methylmalonate-semialdehyde dehydrogenase YP_986261.1 2111234 R 232721 CDS YP_986262.1 121594366 4673220 2112914..2113825 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB3734 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 2113825 4673220 Ajs_2010 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986262.1 2112914 D 232721 CDS YP_986263.1 121594367 4673330 complement(2113895..2114287) 1 NC_008782.1 KEGG: tbd:Tbd_0731 hypothetical protein; hypothetical protein 2114287 4673330 Ajs_2011 Acidovorax sp. JS42 hypothetical protein YP_986263.1 2113895 R 232721 CDS YP_986264.1 121594368 4673015 2114302..2114775 1 NC_008782.1 PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains; CBS domain-containing protein 2114775 4673015 Ajs_2012 Acidovorax sp. JS42 CBS domain-containing protein YP_986264.1 2114302 D 232721 CDS YP_986265.1 121594369 4672968 complement(2114832..2114990) 1 NC_008782.1 KEGG: pol:Bpro_2400 hypothetical protein; hypothetical protein 2114990 4672968 Ajs_2013 Acidovorax sp. JS42 hypothetical protein YP_986265.1 2114832 R 232721 CDS YP_986266.1 121594370 4672720 2115344..2116534 1 NC_008782.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2116534 4672720 Ajs_2014 Acidovorax sp. JS42 glucose sorbosone dehydrogenase YP_986266.1 2115344 D 232721 CDS YP_986267.1 121594371 4672900 2116689..2117303 1 NC_008782.1 PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2323 isochorismatase hydrolase; isochorismatase hydrolase 2117303 4672900 Ajs_2015 Acidovorax sp. JS42 isochorismatase hydrolase YP_986267.1 2116689 D 232721 CDS YP_986268.1 121594372 4672703 2117524..2119419 1 NC_008782.1 catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 2119419 prpE 4672703 prpE Acidovorax sp. JS42 propionyl-CoA synthetase YP_986268.1 2117524 D 232721 CDS YP_986269.1 121594373 4672854 complement(2119508..2123407) 1 NC_008782.1 KEGG: ppu:PP_1983 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2123407 4672854 Ajs_2017 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_986269.1 2119508 R 232721 CDS YP_986270.1 121594374 4672810 complement(2123626..2124564) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3002 protein of unknown function DUF6, transmembrane; hypothetical protein 2124564 4672810 Ajs_2018 Acidovorax sp. JS42 hypothetical protein YP_986270.1 2123626 R 232721 CDS YP_986271.1 121594375 4672653 complement(2124561..2125109) 1 NC_008782.1 KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2125109 4672653 Ajs_2019 Acidovorax sp. JS42 methylated-DNA--protein-cysteine methyltransferase YP_986271.1 2124561 R 232721 CDS YP_986272.1 121594376 4672546 complement(2125170..2126723) 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family; DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada 2126723 4672546 Ajs_2020 Acidovorax sp. JS42 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada YP_986272.1 2125170 R 232721 CDS YP_986273.1 121594377 4672495 2126920..2128308 1 NC_008782.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rfr:Rfer_2999 phosphomannomutase; phosphomannomutase 2128308 4672495 Ajs_2021 Acidovorax sp. JS42 phosphomannomutase YP_986273.1 2126920 D 232721 CDS YP_986274.1 121594378 4672787 2128329..2129690 1 NC_008782.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 2129690 4672787 Ajs_2022 Acidovorax sp. JS42 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_986274.1 2128329 D 232721 CDS YP_986275.1 121594379 4672783 2129795..2132521 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2132521 4672783 Ajs_2023 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_986275.1 2129795 D 232721 CDS YP_986276.1 121594380 4672550 2132528..2132881 1 NC_008782.1 KEGG: eba:ebB231 hypothetical protein; hypothetical protein 2132881 4672550 Ajs_2024 Acidovorax sp. JS42 hypothetical protein YP_986276.1 2132528 D 232721 CDS YP_986277.1 121594381 4672595 2132926..2133507 1 NC_008782.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa6270 hypothetical protein; deaminase-reductase domain-containing protein 2133507 4672595 Ajs_2025 Acidovorax sp. JS42 deaminase-reductase domain-containing protein YP_986277.1 2132926 D 232721 CDS YP_986278.1 121594382 4672607 complement(2133591..2134808) 1 NC_008782.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 2134808 4672607 Ajs_2026 Acidovorax sp. JS42 TolC family type I secretion outer membrane protein YP_986278.1 2133591 R 232721 CDS YP_986279.1 121594383 4672626 complement(2134994..2135332) 1 NC_008782.1 SMART: Rhodanese domain protein; KEGG: rfr:Rfer_2603 rhodanese-like; rhodanese domain-containing protein 2135332 4672626 Ajs_2027 Acidovorax sp. JS42 rhodanese domain-containing protein YP_986279.1 2134994 R 232721 CDS YP_986280.1 121594384 4672629 complement(2135364..2136074) 1 NC_008782.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase; type 11 methyltransferase 2136074 4672629 Ajs_2028 Acidovorax sp. JS42 type 11 methyltransferase YP_986280.1 2135364 R 232721 CDS YP_986281.1 121594385 4672631 complement(2136122..2136784) 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family; TetR family transcriptional regulator 2136784 4672631 Ajs_2029 Acidovorax sp. JS42 TetR family transcriptional regulator YP_986281.1 2136122 R 232721 CDS YP_986282.1 121594386 4672769 2136915..2137460 1 NC_008782.1 KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2137460 4672769 Ajs_2030 Acidovorax sp. JS42 peptide methionine sulfoxide reductase YP_986282.1 2136915 D 232721 CDS YP_986283.1 121594387 4672768 2137613..2137852 1 NC_008782.1 KEGG: pol:Bpro_1680 hypothetical protein; hypothetical protein 2137852 4672768 Ajs_2031 Acidovorax sp. JS42 hypothetical protein YP_986283.1 2137613 D 232721 CDS YP_986284.1 121594388 4672714 2137878..2138282 1 NC_008782.1 hypothetical protein 2138282 4672714 Ajs_2032 Acidovorax sp. JS42 hypothetical protein YP_986284.1 2137878 D 232721 CDS YP_986285.1 121594389 4672758 2138459..2140546 1 NC_008782.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0186 putative outer membrane protein; TonB-dependent receptor 2140546 4672758 Ajs_2033 Acidovorax sp. JS42 TonB-dependent receptor YP_986285.1 2138459 D 232721 CDS YP_986286.1 121594390 4672656 2140960..2141832 1 NC_008782.1 KEGG: eba:ebA6713 hypothetical protein; hypothetical protein 2141832 4672656 Ajs_2034 Acidovorax sp. JS42 hypothetical protein YP_986286.1 2140960 D 232721 CDS YP_986287.1 121594391 4672750 2141969..2143192 1 NC_008782.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pau:PA14_55740 putative chromate transport protein; chromate transporter 2143192 4672750 Ajs_2035 Acidovorax sp. JS42 chromate transporter YP_986287.1 2141969 D 232721 CDS YP_986288.1 121594392 4672374 complement(2143257..2143709) 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_2154 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2143709 4672374 Ajs_2036 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986288.1 2143257 R 232721 CDS YP_986289.1 121594393 4672358 2143847..2145016 1 NC_008782.1 PFAM: Saccharopine dehydrogenase; KEGG: bpe:BP3682 putative dehydrogenase; saccharopine dehydrogenase 2145016 4672358 Ajs_2037 Acidovorax sp. JS42 saccharopine dehydrogenase YP_986289.1 2143847 D 232721 CDS YP_986290.1 121594394 4672208 complement(2145017..2146846) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 2146846 4672208 Ajs_2038 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_986290.1 2145017 R 232721 CDS YP_986291.1 121594395 4671966 complement(2147015..2147650) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family; GntR family transcriptional regulator 2147650 4671966 Ajs_2039 Acidovorax sp. JS42 GntR family transcriptional regulator YP_986291.1 2147015 R 232721 CDS YP_986292.1 121594396 4672172 2147775..2149937 1 NC_008782.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2149937 4672172 Ajs_2040 Acidovorax sp. JS42 methylmalonyl-CoA mutase YP_986292.1 2147775 D 232721 CDS YP_986293.1 121594397 4671971 2149997..2150962 1 NC_008782.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2150962 4671971 Ajs_2041 Acidovorax sp. JS42 arginine/ornithine transport system ATPase YP_986293.1 2149997 D 232721 CDS YP_986294.1 121594398 4672150 2150988..2152520 1 NC_008782.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase; carboxyl transferase 2152520 4672150 Ajs_2042 Acidovorax sp. JS42 carboxyl transferase YP_986294.1 2150988 D 232721 CDS YP_986295.1 121594399 4672120 2152542..2154590 1 NC_008782.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain, ATP-binding 2154590 4672120 Ajs_2043 Acidovorax sp. JS42 carbamoyl-phosphate synthase L chain, ATP-binding YP_986295.1 2152542 D 232721 CDS YP_986296.1 121594400 4672103 2154650..2155111 1 NC_008782.1 KEGG: pol:Bpro_2168 lactoylglutathione lyase; lactoylglutathione lyase 2155111 4672103 Ajs_2044 Acidovorax sp. JS42 lactoylglutathione lyase YP_986296.1 2154650 D 232721 CDS YP_986297.1 121594401 4671926 2155477..2156529 1 NC_008782.1 KEGG: rfr:Rfer_2292 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2156529 4671926 Ajs_2045 Acidovorax sp. JS42 biotin synthase YP_986297.1 2155477 D 232721 CDS YP_986298.1 121594402 4671948 2156795..2157586 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2157586 4671948 Ajs_2046 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_986298.1 2156795 D 232721 CDS YP_986299.1 121594403 4671956 2157649..2158065 1 NC_008782.1 KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2158065 4671956 Ajs_2047 Acidovorax sp. JS42 lactoylglutathione lyase YP_986299.1 2157649 D 232721 CDS YP_986300.1 121594404 4671734 complement(2158135..2158782) 1 NC_008782.1 KEGG: rfr:Rfer_2061 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-keto-3-deoxy-phosphogluconate aldolase 2158782 4671734 Ajs_2048 Acidovorax sp. JS42 2-keto-3-deoxy-phosphogluconate aldolase YP_986300.1 2158135 R 232721 CDS YP_986301.1 121594405 4671462 complement(2158773..2160590) 1 NC_008782.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 2160590 4671462 Ajs_2049 Acidovorax sp. JS42 phosphogluconate dehydratase YP_986301.1 2158773 R 232721 CDS YP_986302.1 121594406 4671436 complement(2160751..2161761) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP 2161761 4671436 Ajs_2050 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_986302.1 2160751 R 232721 CDS YP_986303.1 121594407 4671674 complement(2161806..2163086) 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3662 TRAP-T family transporter, large (12TMs) inner membrane subunit; TRAP dicarboxylate transporter subunit DctM 2163086 4671674 Ajs_2051 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_986303.1 2161806 R 232721 CDS YP_986304.1 121594408 4671454 complement(2163095..2163616) 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 2163616 4671454 Ajs_2052 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_986304.1 2163095 R 232721 CDS YP_986305.1 121594409 4671660 complement(2163613..2164161) 1 NC_008782.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase 2164161 4671660 Ajs_2053 Acidovorax sp. JS42 carbohydrate kinase YP_986305.1 2163613 R 232721 CDS YP_986306.1 121594410 4671453 2164377..2165402 1 NC_008782.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family; LacI family transcription regulator 2165402 4671453 Ajs_2054 Acidovorax sp. JS42 LacI family transcription regulator YP_986306.1 2164377 D 232721 CDS YP_986307.1 121594411 4671647 complement(2165586..2166125) 1 NC_008782.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB; OmpA/MotB domain-containing protein 2166125 4671647 Ajs_2055 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_986307.1 2165586 R 232721 CDS YP_986308.1 121594412 4671473 2166188..2166781 1 NC_008782.1 PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein; ChaC family protein 2166781 4671473 Ajs_2056 Acidovorax sp. JS42 ChaC family protein YP_986308.1 2166188 D 232721 CDS YP_986309.1 121594413 4671633 2166815..2167342 1 NC_008782.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: pol:Bpro_3554 superoxide dismutase; superoxide dismutase, copper/zinc-binding 2167342 4671633 Ajs_2057 Acidovorax sp. JS42 superoxide dismutase, copper/zinc-binding YP_986309.1 2166815 D 232721 CDS YP_986310.1 121594414 4671440 2167381..2168034 1 NC_008782.1 KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 2168034 4671440 Ajs_2058 Acidovorax sp. JS42 pyridoxamine 5'-phosphate oxidase YP_986310.1 2167381 D 232721 CDS YP_986311.1 121594415 4671612 complement(2168079..2169107) 1 NC_008782.1 PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2056 auxin efflux carrier; auxin efflux carrier 2169107 4671612 Ajs_2059 Acidovorax sp. JS42 auxin efflux carrier YP_986311.1 2168079 R 232721 CDS YP_986312.1 121594416 4671421 2169267..2170322 1 NC_008782.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 2170322 4671421 Ajs_2060 Acidovorax sp. JS42 tRNA-dihydrouridine synthase A YP_986312.1 2169267 D 232721 CDS YP_986313.1 121594417 4671595 complement(2170312..2173014) 1 NC_008782.1 KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 2173014 4671595 Ajs_2061 Acidovorax sp. JS42 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase YP_986313.1 2170312 R 232721 CDS YP_986314.1 121594418 4671396 2173184..2174254 1 NC_008782.1 PFAM: RelA/SpoT domain protein; KEGG: sth:STH1636 putative GTP pyrophosphokinase; RelA/SpoT domain-containing protein 2174254 4671396 Ajs_2062 Acidovorax sp. JS42 RelA/SpoT domain-containing protein YP_986314.1 2173184 D 232721 CDS YP_986315.1 121594419 4671274 2174424..2175731 1 NC_008782.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 2175731 4671274 Ajs_2063 Acidovorax sp. JS42 polyhydroxyalkanoate depolymerase YP_986315.1 2174424 D 232721 CDS YP_986316.1 121594420 4671318 2175740..2176393 1 NC_008782.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B 2176393 4671318 Ajs_2064 Acidovorax sp. JS42 RnfABCDGE type electron transport complex subunit B YP_986316.1 2175740 D 232721 CDS YP_986317.1 121594421 4671566 complement(2176476..2178140) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2342 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2178140 4671566 Ajs_2065 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_986317.1 2176476 R 232721 CDS YP_986318.1 121594422 4671342 2178160..2179374 1 NC_008782.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2179374 4671342 Ajs_2066 Acidovorax sp. JS42 succinyldiaminopimelate transaminase YP_986318.1 2178160 D 232721 CDS YP_986319.1 121594423 4671359 2179371..2180195 1 NC_008782.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2180195 dapD 4671359 dapD Acidovorax sp. JS42 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_986319.1 2179371 D 232721 CDS YP_986320.1 121594424 4671373 2180252..2181415 1 NC_008782.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein; twitching motility protein 2181415 4671373 Ajs_2068 Acidovorax sp. JS42 twitching motility protein YP_986320.1 2180252 D 232721 CDS YP_986321.1 121594425 4671389 2181459..2182634 1 NC_008782.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2182634 4671389 Ajs_2069 Acidovorax sp. JS42 succinyl-diaminopimelate desuccinylase YP_986321.1 2181459 D 232721 CDS YP_986322.1 121594426 4670945 2182631..2183560 1 NC_008782.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2183560 4670945 Ajs_2070 Acidovorax sp. JS42 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_986322.1 2182631 D 232721 CDS YP_986323.1 121594427 4670930 2183607..2185577 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related; ABC transporter-like protein 2185577 4670930 Ajs_2071 Acidovorax sp. JS42 ABC transporter-like protein YP_986323.1 2183607 D 232721 CDS YP_986324.1 121594428 4670913 complement(2186026..2186763) 1 NC_008782.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 2186763 fabG 4670913 fabG Acidovorax sp. JS42 3-ketoacyl-(acyl-carrier-protein) reductase YP_986324.1 2186026 R 232721 CDS YP_986325.1 121594429 4670883 complement(2187009..2188187) 1 NC_008782.1 KEGG: pol:Bpro_2140 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2188187 4670883 Ajs_2073 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_986325.1 2187009 R 232721 CDS YP_986326.1 121594430 4670876 complement(2188329..2190128) 1 NC_008782.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase, class I 2190128 4670876 Ajs_2074 Acidovorax sp. JS42 poly(R)-hydroxyalkanoic acid synthase, class I YP_986326.1 2188329 R 232721 CDS YP_986327.1 121594431 4670836 2190201..2190491 1 NC_008782.1 KEGG: rfr:Rfer_2563 hypothetical protein; hypothetical protein 2190491 4670836 Ajs_2075 Acidovorax sp. JS42 hypothetical protein YP_986327.1 2190201 D 232721 CDS YP_986328.1 121594432 4670831 complement(2190408..2191235) 1 NC_008782.1 PFAM: protein of unknown function DUF152; KEGG: rfr:Rfer_2564 protein of unknown function DUF152; hypothetical protein 2191235 4670831 Ajs_2076 Acidovorax sp. JS42 hypothetical protein YP_986328.1 2190408 R 232721 CDS YP_986329.1 121594433 4670782 complement(2191265..2191933) 1 NC_008782.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; maleylacetoacetate isomerase 2191933 4670782 Ajs_2077 Acidovorax sp. JS42 maleylacetoacetate isomerase YP_986329.1 2191265 R 232721 CDS YP_986330.1 121594434 4670772 2192052..2192747 1 NC_008782.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rfr:Rfer_2567 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2192747 4670772 Ajs_2078 Acidovorax sp. JS42 fumarylacetoacetate (FAA) hydrolase YP_986330.1 2192052 D 232721 CDS YP_986331.1 121594435 4670624 2192819..2193367 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase; NUDIX hydrolase 2193367 4670624 Ajs_2079 Acidovorax sp. JS42 NUDIX hydrolase YP_986331.1 2192819 D 232721 CDS YP_986332.1 121594436 4671181 complement(2193360..2194562) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1445 probable transmembrane protein; major facilitator superfamily transporter 2194562 4671181 Ajs_2080 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986332.1 2193360 R 232721 CDS YP_986333.1 121594437 4670949 complement(2194578..2197118) 1 NC_008782.1 PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: rme:Rmet_4835 glycosyl transferase, family 51; glycosyl transferase family protein 2197118 4670949 Ajs_2081 Acidovorax sp. JS42 glycosyl transferase family protein YP_986333.1 2194578 R 232721 CDS YP_986334.1 121594438 4671100 complement(2197365..2198315) 1 NC_008782.1 PFAM: Patatin; KEGG: nmu:Nmul_A0164 patatin; patatin 2198315 4671100 Ajs_2082 Acidovorax sp. JS42 patatin YP_986334.1 2197365 R 232721 CDS YP_986335.1 121594439 4671145 complement(2198316..2200511) 1 NC_008782.1 KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; DNA ligase 2200511 4671145 Ajs_2083 Acidovorax sp. JS42 DNA ligase YP_986335.1 2198316 R 232721 CDS YP_986336.1 121594440 4671333 complement(2200523..2200897) 1 NC_008782.1 KEGG: neu:NE2258 hypothetical protein; hypothetical protein 2200897 4671333 Ajs_2084 Acidovorax sp. JS42 hypothetical protein YP_986336.1 2200523 R 232721 CDS YP_986337.1 121594441 4671393 complement(2200906..2202048) 1 NC_008782.1 SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rfr:Rfer_2200 hypothetical protein; ZipA protein 2202048 4671393 Ajs_2085 Acidovorax sp. JS42 ZipA protein YP_986337.1 2200906 R 232721 CDS YP_986338.1 121594442 4671847 complement(2202062..2205586) 1 NC_008782.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: rfr:Rfer_2199 chromosome segregation protein SMC; chromosome segregation protein SMC 2205586 4671847 Ajs_2086 Acidovorax sp. JS42 chromosome segregation protein SMC YP_986338.1 2202062 R 232721 CDS YP_986339.1 121594443 4671588 complement(2205761..2206093) 1 NC_008782.1 PFAM: protein of unknown function UPF0060; KEGG: rme:Rmet_4032 protein of unknown function UPF0060; hypothetical protein 2206093 4671588 Ajs_2087 Acidovorax sp. JS42 hypothetical protein YP_986339.1 2205761 R 232721 CDS YP_986340.1 121594444 4671659 complement(2206129..2209272) 1 NC_008782.1 KEGG: rfr:Rfer_3250 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase 2209272 4671659 Ajs_2088 Acidovorax sp. JS42 PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase YP_986340.1 2206129 R 232721 CDS YP_986341.1 121594445 4671817 2209472..2211313 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C7674 ABC efflux pump, ATPase subunit; ABC transporter-like protein 2211313 4671817 Ajs_2089 Acidovorax sp. JS42 ABC transporter-like protein YP_986341.1 2209472 D 232721 CDS YP_986342.1 121594446 4671944 complement(2211434..2212870) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05323 probable transporter transmembrane protein; major facilitator superfamily transporter 2212870 4671944 Ajs_2090 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986342.1 2211434 R 232721 CDS YP_986343.1 121594447 4671859 2213174..2213752 1 NC_008782.1 PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60; NLP/P60 protein 2213752 4671859 Ajs_2091 Acidovorax sp. JS42 NLP/P60 protein YP_986343.1 2213174 D 232721 CDS YP_986344.1 121594448 4672289 2213887..2214366 1 NC_008782.1 PFAM: protein of unknown function DUF55; KEGG: bte:BTH_I0831 family of unknown function (DUF589) superfamily; hypothetical protein 2214366 4672289 Ajs_2092 Acidovorax sp. JS42 hypothetical protein YP_986344.1 2213887 D 232721 CDS YP_986345.1 121594449 4672444 complement(2214559..2215446) 1 NC_008782.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: reu:Reut_C5900 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding:3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase 2215446 4672444 Ajs_2093 Acidovorax sp. JS42 6-phosphogluconate dehydrogenase YP_986345.1 2214559 R 232721 CDS YP_986346.1 121594450 4672575 complement(2215510..2216469) 1 NC_008782.1 PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_1486 conserved hypothetical protein 95; hypothetical protein 2216469 4672575 Ajs_2094 Acidovorax sp. JS42 hypothetical protein YP_986346.1 2215510 R 232721 CDS YP_986347.1 121594451 4673174 2216595..2216909 1 NC_008782.1 KEGG: eba:ebB41 hypothetical protein; hypothetical protein 2216909 4673174 Ajs_2095 Acidovorax sp. JS42 hypothetical protein YP_986347.1 2216595 D 232721 CDS YP_986348.1 121594452 4672517 complement(2217044..2218894) 1 NC_008782.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2218894 4672517 Ajs_2096 Acidovorax sp. JS42 dihydrolipoamide dehydrogenase YP_986348.1 2217044 R 232721 CDS YP_986349.1 121594453 4672953 complement(2219061..2220113) 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA3655 probable alcohol dehydrogenase; alcohol dehydrogenase 2220113 4672953 Ajs_2098 Acidovorax sp. JS42 alcohol dehydrogenase YP_986349.1 2219061 R 232721 CDS YP_986350.1 121594454 4673160 complement(2220252..2221142) 1 NC_008782.1 KEGG: reu:Reut_A1460 conserved hypothetical protein; putative signal peptide; putative signal peptide 2221142 4673160 Ajs_2099 Acidovorax sp. JS42 putative signal peptide YP_986350.1 2220252 R 232721 CDS YP_986351.1 121594455 4673942 complement(2221236..2221988) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_5564 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2221988 4673942 Ajs_2100 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_986351.1 2221236 R 232721 CDS YP_986352.1 121594456 4673947 2222166..2223407 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2223407 4673947 Ajs_2101 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_986352.1 2222166 D 232721 CDS YP_986353.1 121594457 4673451 complement(2223366..2224919) 1 NC_008782.1 KEGG: pol:Bpro_5565 flavin-containing monooxygenase FMO; cyclohexanone monooxygenase 2224919 4673451 Ajs_2102 Acidovorax sp. JS42 cyclohexanone monooxygenase YP_986353.1 2223366 R 232721 CDS YP_986354.1 121594458 4673965 complement(2226597..2227235) 1 NC_008782.1 KEGG: bmb:BruAb2_0725 hypothetical protein; hypothetical protein 2227235 4673965 Ajs_2105 Acidovorax sp. JS42 hypothetical protein YP_986354.1 2226597 R 232721 CDS YP_986355.1 121594459 4670577 2227363..2227854 1 NC_008782.1 PFAM: MgtC/SapB transporter; KEGG: bbr:BB4258 putative Mg(2+) transporter; MgtC/SapB transporter 2227854 4670577 Ajs_2106 Acidovorax sp. JS42 MgtC/SapB transporter YP_986355.1 2227363 D 232721 CDS YP_986356.1 121594460 4673709 complement(2228517..2230064) 1 NC_008782.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 2230064 4673709 Ajs_2108 Acidovorax sp. JS42 putative transposase YP_986356.1 2228517 R 232721 CDS YP_986357.1 121594461 4673468 complement(2230325..2231194) 1 NC_008782.1 PFAM: O-methyltransferase domain protein; KEGG: mlo:mll3178 hypothetical protein; O-methyltransferase domain-containing protein 2231194 4673468 Ajs_2110 Acidovorax sp. JS42 O-methyltransferase domain-containing protein YP_986357.1 2230325 R 232721 CDS YP_986358.1 121594462 4673373 complement(2231742..2232179) 1 NC_008782.1 KEGG: pau:PA14_04100 hypothetical protein; hypothetical protein 2232179 4673373 Ajs_2112 Acidovorax sp. JS42 hypothetical protein YP_986358.1 2231742 R 232721 CDS YP_986359.1 121594463 4673002 2232370..2233242 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 3; KEGG: pau:PA14_04090 putative binding protein component of ABC transporter; extracellular solute-binding protein 2233242 4673002 Ajs_2113 Acidovorax sp. JS42 extracellular solute-binding protein YP_986359.1 2232370 D 232721 CDS YP_986360.1 121594464 4672965 2233314..2234006 1 NC_008782.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_04080 putative permease of ABC transporter; polar amino acid ABC transporter inner membrane subunit 2234006 4672965 Ajs_2114 Acidovorax sp. JS42 polar amino acid ABC transporter inner membrane subunit YP_986360.1 2233314 D 232721 CDS YP_986361.1 121594465 4672700 complement(2234009..2234503) 1 NC_008782.1 PFAM: protein of unknown function DUF523; KEGG: pau:PA14_04070 hypothetical protein; hypothetical protein 2234503 4672700 Ajs_2115 Acidovorax sp. JS42 hypothetical protein YP_986361.1 2234009 R 232721 CDS YP_986362.1 121594466 4672824 2234769..2235323 1 NC_008782.1 KEGG: pau:PA14_04060 hypothetical protein; hypothetical protein 2235323 4672824 Ajs_2116 Acidovorax sp. JS42 hypothetical protein YP_986362.1 2234769 D 232721 CDS YP_986363.1 121594467 4672589 complement(2235345..2235725) 1 NC_008782.1 KEGG: pau:PA14_04050 putative proline hydroxylase; proline hydroxylase-like protein 2235725 4672589 Ajs_2117 Acidovorax sp. JS42 proline hydroxylase-like protein YP_986363.1 2235345 R 232721 CDS YP_986364.1 121594468 4672242 complement(2237225..2238427) 1 NC_008782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2040 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2238427 4672242 Ajs_2119 Acidovorax sp. JS42 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_986364.1 2237225 R 232721 CDS YP_986365.1 121594469 4671939 2238621..2239160 1 NC_008782.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN2041 transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2239160 4671939 Ajs_2120 Acidovorax sp. JS42 BadM/Rrf2 family transcriptional regulator YP_986365.1 2238621 D 232721 CDS YP_986366.1 121594470 4671781 complement(2239352..2240944) 1 NC_008782.1 PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 2240944 4671781 Ajs_2121 Acidovorax sp. JS42 putative transposase YP_986366.1 2239352 R 232721 CDS YP_986367.1 121594471 4671719 complement(2240957..2242045) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 2242045 4671719 Ajs_2122 Acidovorax sp. JS42 transposase, IS4 family protein YP_986367.1 2240957 R 232721 CDS YP_986368.1 121594472 4671634 complement(2242333..2244216) 1 NC_008782.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2244216 4671634 Ajs_2123 Acidovorax sp. JS42 dihydrolipoamide dehydrogenase YP_986368.1 2242333 R 232721 CDS YP_986369.1 121594473 4671343 complement(2244233..2245936) 1 NC_008782.1 KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 2245936 4671343 Ajs_2124 Acidovorax sp. JS42 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_986369.1 2244233 R 232721 CDS YP_986370.1 121594474 4670861 complement(2245956..2248652) 1 NC_008782.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2248652 aceE 4670861 aceE Acidovorax sp. JS42 pyruvate dehydrogenase subunit E1 YP_986370.1 2245956 R 232721 CDS YP_986371.1 121594475 4670523 2248822..2251368 1 NC_008782.1 KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2251368 4670523 Ajs_2126 Acidovorax sp. JS42 multi-sensor signal transduction histidine kinase YP_986371.1 2248822 D 232721 CDS YP_986372.1 121594476 4670762 2251365..2251991 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2251991 4670762 Ajs_2127 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_986372.1 2251365 D 232721 CDS YP_986373.1 121594477 4670690 2252070..2252918 1 NC_008782.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2252918 4670690 Ajs_2128 Acidovorax sp. JS42 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_986373.1 2252070 D 232721 CDS YP_986374.1 121594478 4674720 2253006..2255039 1 NC_008782.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A; oligopeptidase A 2255039 4674720 Ajs_2129 Acidovorax sp. JS42 oligopeptidase A YP_986374.1 2253006 D 232721 CDS YP_986375.1 121594479 4674472 2255154..2255810 1 NC_008782.1 PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin; glutaredoxin 2255810 4674472 Ajs_2130 Acidovorax sp. JS42 glutaredoxin YP_986375.1 2255154 D 232721 CDS YP_986376.1 121594480 4674722 complement(2255861..2256550) 1 NC_008782.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2256550 4674722 Ajs_2131 Acidovorax sp. JS42 ribose-5-phosphate isomerase A YP_986376.1 2255861 R 232721 CDS YP_986377.1 121594481 4670618 2256586..2257641 1 NC_008782.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2257641 4670618 Ajs_2132 Acidovorax sp. JS42 dihydroorotate dehydrogenase 2 YP_986377.1 2256586 D 232721 CDS YP_986378.1 121594482 4670503 complement(2257699..2258022) 1 NC_008782.1 hypothetical protein 2258022 4670503 Ajs_2133 Acidovorax sp. JS42 hypothetical protein YP_986378.1 2257699 R 232721 CDS YP_986379.1 121594483 4670674 complement(2258019..2258414) 1 NC_008782.1 KEGG: nmu:Nmul_A0655 hypothetical protein; hypothetical protein 2258414 4670674 Ajs_2134 Acidovorax sp. JS42 hypothetical protein YP_986379.1 2258019 R 232721 CDS YP_986380.1 121594484 4670689 complement(2258482..2258862) 1 NC_008782.1 PFAM: protein of unknown function DUF883, ElaB; KEGG: cvi:CV3467 transmembrane protein; hypothetical protein 2258862 4670689 Ajs_2135 Acidovorax sp. JS42 hypothetical protein YP_986380.1 2258482 R 232721 CDS YP_986381.1 121594485 4670732 complement(2258921..2260036) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2706 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2260036 4670732 Ajs_2136 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_986381.1 2258921 R 232721 CDS YP_986382.1 121594486 4670771 complement(2260054..2261130) 1 NC_008782.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_2707 histone deacetylase superfamily; histone deacetylase superfamily protein 2261130 4670771 Ajs_2137 Acidovorax sp. JS42 histone deacetylase superfamily protein YP_986382.1 2260054 R 232721 CDS YP_986383.1 121594487 4670943 complement(2261438..2262151) 1 NC_008782.1 KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2262151 4670943 Ajs_2138 Acidovorax sp. JS42 DNA polymerase III subunit epsilon YP_986383.1 2261438 R 232721 CDS YP_986384.1 121594488 4671024 complement(2262151..2262489) 1 NC_008782.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type; 2Fe-2S type ferredoxin, ISC system 2262489 4671024 Ajs_2139 Acidovorax sp. JS42 2Fe-2S type ferredoxin, ISC system YP_986384.1 2262151 R 232721 CDS YP_986385.1 121594489 4671526 complement(2262523..2264391) 1 NC_008782.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2264391 hscA 4671526 hscA Acidovorax sp. JS42 chaperone protein HscA YP_986385.1 2262523 R 232721 CDS YP_986386.1 121594490 4671542 complement(2264458..2264976) 1 NC_008782.1 TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: rfr:Rfer_2180 co-chaperone Hsc20; co-chaperone Hsc20 2264976 4671542 Ajs_2141 Acidovorax sp. JS42 co-chaperone Hsc20 YP_986386.1 2264458 R 232721 CDS YP_986387.1 121594491 4671548 complement(2265045..2265368) 1 NC_008782.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2265368 4671548 Ajs_2142 Acidovorax sp. JS42 iron-sulfur cluster assembly protein IscA YP_986387.1 2265045 R 232721 CDS YP_986388.1 121594492 4671600 complement(2265374..2265775) 1 NC_008782.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold IscU 2265775 4671600 Ajs_2143 Acidovorax sp. JS42 FeS cluster assembly scaffold IscU YP_986388.1 2265374 R 232721 CDS YP_986389.1 121594493 4671438 complement(2265813..2267033) 1 NC_008782.1 TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_2177 cysteine desulfurase IscS; cysteine desulfurase IscS 2267033 4671438 Ajs_2144 Acidovorax sp. JS42 cysteine desulfurase IscS YP_986389.1 2265813 R 232721 CDS YP_986390.1 121594494 4671461 complement(2267138..2267674) 1 NC_008782.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2267674 4671461 Ajs_2145 Acidovorax sp. JS42 BadM/Rrf2 family transcriptional regulator YP_986390.1 2267138 R 232721 CDS YP_986391.1 121594495 4671689 2268368..2269594 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 2269594 4671689 Ajs_2147 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_986391.1 2268368 D 232721 CDS YP_986392.1 121594496 4671708 complement(2269703..2270929) 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 2270929 4671708 Ajs_2148 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_986392.1 2269703 R 232721 CDS YP_986393.1 121594497 4671714 complement(2270922..2272013) 1 NC_008782.1 KEGG: bxe:Bxe_A3516 putative transposase; putative transposase 2272013 4671714 Ajs_2149 Acidovorax sp. JS42 putative transposase YP_986393.1 2270922 R 232721 CDS YP_986394.1 121594498 4671767 complement(2272136..2274232) 1 NC_008782.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2274232 4671767 Ajs_2150 Acidovorax sp. JS42 excinuclease ABC subunit B YP_986394.1 2272136 R 232721 CDS YP_986395.1 121594499 4672087 2274341..2275537 1 NC_008782.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2275537 4672087 Ajs_2151 Acidovorax sp. JS42 aromatic amino acid aminotransferase YP_986395.1 2274341 D 232721 CDS YP_986396.1 121594500 4672116 2275691..2277460 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3609 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2277460 4672116 Ajs_2152 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_986396.1 2275691 D 232721 CDS YP_986397.1 121594501 4672175 2277463..2278341 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_1333 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2278341 4672175 Ajs_2153 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_986397.1 2277463 D 232721 CDS YP_986398.1 121594502 4672007 2278349..2278843 1 NC_008782.1 PFAM: protein of unknown function DUF1294; KEGG: shm:Shewmr7_2883 protein of unknown function DUF1294; hypothetical protein 2278843 4672007 Ajs_2154 Acidovorax sp. JS42 hypothetical protein YP_986398.1 2278349 D 232721 CDS YP_986399.1 121594503 4672306 2281797..2283050 1 NC_008782.1 PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type; transposase, mutator type 2283050 4672306 Ajs_2156 Acidovorax sp. JS42 transposase, mutator type YP_986399.1 2281797 D 232721 CDS YP_986400.1 121594504 4672323 2283178..2284206 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6282 integrase, catalytic region; integrase catalytic subunit 2284206 4672323 Ajs_2157 Acidovorax sp. JS42 integrase catalytic subunit YP_986400.1 2283178 D 232721 CDS YP_986401.1 121594505 4672340 2284331..2284963 1 NC_008782.1 KEGG: aeh:Mlg_1386 hypothetical protein; hypothetical protein 2284963 4672340 Ajs_2158 Acidovorax sp. JS42 hypothetical protein YP_986401.1 2284331 D 232721 CDS YP_986402.1 121594506 4672377 2285016..2285273 1 NC_008782.1 KEGG: aeh:Mlg_1384 hypothetical protein; hypothetical protein 2285273 4672377 Ajs_2159 Acidovorax sp. JS42 hypothetical protein YP_986402.1 2285016 D 232721 CDS YP_986403.1 121594507 4672756 2285407..2286117 1 NC_008782.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY0852 hypothetical protein; type 11 methyltransferase 2286117 4672756 Ajs_2160 Acidovorax sp. JS42 type 11 methyltransferase YP_986403.1 2285407 D 232721 CDS YP_986404.1 121594508 4672781 2286208..2287785 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 2287785 4672781 Ajs_2161 Acidovorax sp. JS42 beta-phosphoglucomutase family hydrolase YP_986404.1 2286208 D 232721 CDS YP_986405.1 121594509 4672833 2287782..2290205 1 NC_008782.1 PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; trehalose 6-phosphate phosphorylase 2290205 4672833 Ajs_2162 Acidovorax sp. JS42 trehalose 6-phosphate phosphorylase YP_986405.1 2287782 D 232721 CDS YP_986406.1 121594510 4672665 2290268..2291281 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2291281 4672665 Ajs_2163 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_986406.1 2290268 D 232721 CDS YP_986407.1 121594511 4672889 2291290..2293728 1 NC_008782.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: noc:Noc_1446 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase 2293728 4672889 Ajs_2164 Acidovorax sp. JS42 phosphoenolpyruvate synthase YP_986407.1 2291290 D 232721 CDS YP_986408.1 121594512 4672916 2293773..2294813 1 NC_008782.1 catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; glyceraldehyde-3-phosphate dehydrogenase 2294813 4672916 Ajs_2165 Acidovorax sp. JS42 glyceraldehyde-3-phosphate dehydrogenase YP_986408.1 2293773 D 232721 CDS YP_986409.1 121594513 4672986 2296121..2296687 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 2296687 4672986 Ajs_2168 Acidovorax sp. JS42 TetR family transcriptional regulator YP_986409.1 2296121 D 232721 CDS YP_986410.1 121594514 4673028 complement(2296764..2297501) 1 NC_008782.1 PFAM: LysR, substrate-binding; KEGG: eba:ebA2490 transcriptional regulator; LysR family transcriptional regulator 2297501 4673028 Ajs_2169 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986410.1 2296764 R 232721 CDS YP_986411.1 121594515 4673256 2297676..2298293 1 NC_008782.1 KEGG: mag:amb3764 hypothetical protein; hypothetical protein 2298293 4673256 Ajs_2170 Acidovorax sp. JS42 hypothetical protein YP_986411.1 2297676 D 232721 CDS YP_986412.1 121594516 4673350 2298290..2299960 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 2299960 4673350 Ajs_2171 Acidovorax sp. JS42 integrase catalytic subunit YP_986412.1 2298290 D 232721 CDS YP_986413.1 121594517 4673217 2299957..2300853 1 NC_008782.1 PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 2300853 4673217 Ajs_2172 Acidovorax sp. JS42 TniB family protein YP_986413.1 2299957 D 232721 CDS YP_986414.1 121594518 4673427 2300850..2302343 1 NC_008782.1 KEGG: mes:Meso_4392 hypothetical protein; hypothetical protein 2302343 4673427 Ajs_2173 Acidovorax sp. JS42 hypothetical protein YP_986414.1 2300850 D 232721 CDS YP_986415.1 121594519 4673454 2302481..2302780 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: eba:ebA2491 hypothetical protein; XRE family transcriptional regulator 2302780 4673454 Ajs_2174 Acidovorax sp. JS42 XRE family transcriptional regulator YP_986415.1 2302481 D 232721 CDS YP_986416.1 121594520 4673514 complement(2302807..2304651) 1 NC_008782.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: eba:ebA2492 hypothetical protein; relaxase 2304651 4673514 Ajs_2175 Acidovorax sp. JS42 relaxase YP_986416.1 2302807 R 232721 CDS YP_986417.1 121594521 4673540 complement(2304854..2305774) 1 NC_008782.1 KEGG: xcb:XC_1037 hypothetical protein; hypothetical protein 2305774 4673540 Ajs_2176 Acidovorax sp. JS42 hypothetical protein YP_986417.1 2304854 R 232721 CDS YP_986418.1 121594522 4673564 complement(2305767..2306594) 1 NC_008782.1 KEGG: xcb:XC_1038 hypothetical protein; hypothetical protein 2306594 4673564 Ajs_2177 Acidovorax sp. JS42 hypothetical protein YP_986418.1 2305767 R 232721 CDS YP_986419.1 121594523 4673577 2306755..2307123 1 NC_008782.1 KEGG: net:Neut_0072 conserved hypothetical protein; hypothetical protein 2307123 4673577 Ajs_2178 Acidovorax sp. JS42 hypothetical protein YP_986419.1 2306755 D 232721 CDS YP_986420.1 121594524 4673630 complement(2307140..2308663) 1 NC_008782.1 KEGG: eba:ebA2395 hypothetical protein; hypothetical protein 2308663 4673630 Ajs_2179 Acidovorax sp. JS42 hypothetical protein YP_986420.1 2307140 R 232721 CDS YP_986421.1 121594525 4673704 complement(2308679..2309032) 1 NC_008782.1 KEGG: eba:ebB79 hypothetical protein; hypothetical protein 2309032 4673704 Ajs_2180 Acidovorax sp. JS42 hypothetical protein YP_986421.1 2308679 R 232721 CDS YP_986422.1 121594526 4673309 complement(2309029..2310435) 1 NC_008782.1 KEGG: eba:ebA2510 hypothetical protein; hypothetical protein 2310435 4673309 Ajs_2181 Acidovorax sp. JS42 hypothetical protein YP_986422.1 2309029 R 232721 CDS YP_986423.1 121594527 4674166 complement(2310446..2311390) 1 NC_008782.1 PFAM: protein of unknown function DUF1527; KEGG: eba:ebA2511 hypothetical protein; hypothetical protein 2311390 4674166 Ajs_2182 Acidovorax sp. JS42 hypothetical protein YP_986423.1 2310446 R 232721 CDS YP_986424.1 121594528 4674182 complement(2311387..2311836) 1 NC_008782.1 PFAM: protein of unknown function DUF1525; KEGG: eba:ebB80 hypothetical protein; hypothetical protein 2311836 4674182 Ajs_2183 Acidovorax sp. JS42 hypothetical protein YP_986424.1 2311387 R 232721 CDS YP_986425.1 121594529 4674178 complement(2312005..2312499) 1 NC_008782.1 PFAM: DNA repair protein RadC; KEGG: eba:ebA2514 DNA repair protein similar to radC-family; DNA repair protein RadC 2312499 4674178 Ajs_2184 Acidovorax sp. JS42 DNA repair protein RadC YP_986425.1 2312005 R 232721 CDS YP_986426.1 121594530 4674180 complement(2312695..2313438) 1 NC_008782.1 KEGG: eba:ebA2405 hypothetical protein; hypothetical protein 2313438 4674180 Ajs_2185 Acidovorax sp. JS42 hypothetical protein YP_986426.1 2312695 R 232721 CDS YP_986427.1 121594531 4674219 complement(2313452..2316340) 1 NC_008782.1 KEGG: eba:ebA2406 hypothetical protein; hypothetical protein 2316340 4674219 Ajs_2186 Acidovorax sp. JS42 hypothetical protein YP_986427.1 2313452 R 232721 CDS YP_986428.1 121594532 4674238 complement(2316340..2316774) 1 NC_008782.1 KEGG: eba:ebA2407 hypothetical protein; hypothetical protein 2316774 4674238 Ajs_2187 Acidovorax sp. JS42 hypothetical protein YP_986428.1 2316340 R 232721 CDS YP_986429.1 121594533 4674243 complement(2316755..2318188) 1 NC_008782.1 KEGG: eba:ebA2408 hypothetical protein; hypothetical protein 2318188 4674243 Ajs_2188 Acidovorax sp. JS42 hypothetical protein YP_986429.1 2316755 R 232721 CDS YP_986430.1 121594534 4674157 complement(2318178..2319092) 1 NC_008782.1 KEGG: eba:ebA2409 hypothetical protein; hypothetical protein 2319092 4674157 Ajs_2189 Acidovorax sp. JS42 hypothetical protein YP_986430.1 2318178 R 232721 CDS YP_986431.1 121594535 4674269 complement(2319089..2319781) 1 NC_008782.1 KEGG: eba:ebA2410 hypothetical protein; hypothetical protein 2319781 4674269 Ajs_2190 Acidovorax sp. JS42 hypothetical protein YP_986431.1 2319089 R 232721 CDS YP_986432.1 121594536 4674292 complement(2319778..2320188) 1 NC_008782.1 KEGG: eba:ebB69 hypothetical protein; hypothetical protein 2320188 4674292 Ajs_2191 Acidovorax sp. JS42 hypothetical protein YP_986432.1 2319778 R 232721 CDS YP_986433.1 121594537 4674314 complement(2320201..2320569) 1 NC_008782.1 KEGG: eba:ebB70 hypothetical protein; hypothetical protein 2320569 4674314 Ajs_2192 Acidovorax sp. JS42 hypothetical protein YP_986433.1 2320201 R 232721 CDS YP_986434.1 121594538 4674333 complement(2320592..2320831) 1 NC_008782.1 KEGG: xcv:XCV2374 hypothetical protein; hypothetical protein 2320831 4674333 Ajs_2193 Acidovorax sp. JS42 hypothetical protein YP_986434.1 2320592 R 232721 CDS YP_986435.1 121594539 4674351 complement(2320828..2321187) 1 NC_008782.1 KEGG: eba:ebA2412 hypothetical protein; hypothetical protein 2321187 4674351 Ajs_2194 Acidovorax sp. JS42 hypothetical protein YP_986435.1 2320828 R 232721 CDS YP_986436.1 121594540 4674372 2321480..2321692 1 NC_008782.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sde:Sde_2760 putative transcriptional regulator; phage transcriptional regulator AlpA 2321692 4674372 Ajs_2195 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_986436.1 2321480 D 232721 CDS YP_986437.1 121594541 4674383 2321702..2322802 1 NC_008782.1 KEGG: ter:Tery_4678 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 2322802 4674383 Ajs_2196 Acidovorax sp. JS42 DNA-cytosine methyltransferase YP_986437.1 2321702 D 232721 CDS YP_986438.1 121594542 4674394 2322823..2323281 1 NC_008782.1 KEGG: rha:RHA1_ro04148 probable very short patch repair protein; putative very short patch repair protein 2323281 4674394 Ajs_2197 Acidovorax sp. JS42 putative very short patch repair protein YP_986438.1 2322823 D 232721 CDS YP_986439.1 121594543 4674412 2323302..2326442 1 NC_008782.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein; helicase domain-containing protein 2326442 4674412 Ajs_2198 Acidovorax sp. JS42 helicase domain-containing protein YP_986439.1 2323302 D 232721 CDS YP_986440.1 121594544 4674425 2326439..2328979 1 NC_008782.1 KEGG: bps:BPSL0764 hypothetical protein; hypothetical protein 2328979 4674425 Ajs_2199 Acidovorax sp. JS42 hypothetical protein YP_986440.1 2326439 D 232721 CDS YP_986441.1 121594545 4674448 complement(2328992..2330218) 1 NC_008782.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 2330218 4674448 Ajs_2200 Acidovorax sp. JS42 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_986441.1 2328992 R 232721 CDS YP_986442.1 121594546 4674480 2330411..2331949 1 NC_008782.1 KEGG: ava:Ava_C0223 hypothetical protein; hypothetical protein 2331949 4674480 Ajs_2201 Acidovorax sp. JS42 hypothetical protein YP_986442.1 2330411 D 232721 CDS YP_986443.1 121594547 4674509 2331946..2333901 1 NC_008782.1 KEGG: nma:NMA0428 hypothetical protein; DNA mismatch repair ATPase-like protein 2333901 4674509 Ajs_2202 Acidovorax sp. JS42 DNA mismatch repair ATPase-like protein YP_986443.1 2331946 D 232721 CDS YP_986444.1 121594548 4674521 2333914..2337933 1 NC_008782.1 PFAM: helicase domain protein; KEGG: bps:BPSL0765 putative helicase family protein; helicase domain-containing protein 2337933 4674521 Ajs_2203 Acidovorax sp. JS42 helicase domain-containing protein YP_986444.1 2333914 D 232721 CDS YP_986445.1 121594549 4674565 2337936..2339795 1 NC_008782.1 KEGG: bps:BPSL0766 hypothetical protein; hypothetical protein 2339795 4674565 Ajs_2204 Acidovorax sp. JS42 hypothetical protein YP_986445.1 2337936 D 232721 CDS YP_986446.1 121594550 4674601 2339797..2340558 1 NC_008782.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bps:BPSL0767 putative phospholipase protein; phospholipase D/transphosphatidylase 2340558 4674601 Ajs_2205 Acidovorax sp. JS42 phospholipase D/transphosphatidylase YP_986446.1 2339797 D 232721 CDS YP_986447.1 121594551 4674628 complement(2340610..2341302) 1 NC_008782.1 KEGG: ade:Adeh_3541 hypothetical protein; hypothetical protein 2341302 4674628 Ajs_2206 Acidovorax sp. JS42 hypothetical protein YP_986447.1 2340610 R 232721 CDS YP_986448.1 121594552 4674669 complement(2341585..2342334) 1 NC_008782.1 KEGG: eba:ebA2420 hypothetical protein; hypothetical protein 2342334 4674669 Ajs_2207 Acidovorax sp. JS42 hypothetical protein YP_986448.1 2341585 R 232721 CDS YP_986449.1 121594553 4674693 complement(2342331..2344487) 1 NC_008782.1 KEGG: eba:ebA2421 hypothetical protein; hypothetical protein 2344487 4674693 Ajs_2208 Acidovorax sp. JS42 hypothetical protein YP_986449.1 2342331 R 232721 CDS YP_986450.1 121594554 4673325 complement(2344496..2345029) 1 NC_008782.1 KEGG: eba:ebA2423 hypothetical protein; hypothetical protein 2345029 4673325 Ajs_2209 Acidovorax sp. JS42 hypothetical protein YP_986450.1 2344496 R 232721 CDS YP_986451.1 121594555 4674061 complement(2345026..2345646) 1 NC_008782.1 PFAM: Lytic transglycosylase, catalytic; KEGG: eba:ebA2424 hypothetical protein; lytic transglycosylase catalytic subunit 2345646 4674061 Ajs_2210 Acidovorax sp. JS42 lytic transglycosylase catalytic subunit YP_986451.1 2345026 R 232721 CDS YP_986452.1 121594556 4674075 complement(2345631..2346350) 1 NC_008782.1 KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein 2346350 4674075 Ajs_2211 Acidovorax sp. JS42 hypothetical protein YP_986452.1 2345631 R 232721 CDS YP_986453.1 121594557 4674092 complement(2346437..2347084) 1 NC_008782.1 KEGG: eba:ebA2426 hypothetical protein; hypothetical protein 2347084 4674092 Ajs_2212 Acidovorax sp. JS42 hypothetical protein YP_986453.1 2346437 R 232721 CDS YP_986454.1 121594558 4674128 complement(2347081..2347692) 1 NC_008782.1 KEGG: bxe:Bxe_A1200 hypothetical protein; hypothetical protein 2347692 4674128 Ajs_2213 Acidovorax sp. JS42 hypothetical protein YP_986454.1 2347081 R 232721 CDS YP_986455.1 121594559 4674118 2348050..2348361 1 NC_008782.1 KEGG: nmu:Nmul_B2805 transcriptional regulator, XRE family; hypothetical protein 2348361 4674118 Ajs_2214 Acidovorax sp. JS42 hypothetical protein YP_986455.1 2348050 D 232721 CDS YP_986456.1 121594560 4674103 2348354..2349265 1 NC_008782.1 KEGG: vvy:VV2237 hypothetical protein; hypothetical protein 2349265 4674103 Ajs_2215 Acidovorax sp. JS42 hypothetical protein YP_986456.1 2348354 D 232721 CDS YP_986457.1 121594561 4674004 2349262..2349507 1 NC_008782.1 KEGG: tfu:Tfu_0717 hypothetical protein; hypothetical protein 2349507 4674004 Ajs_2216 Acidovorax sp. JS42 hypothetical protein YP_986457.1 2349262 D 232721 CDS YP_986458.1 121594562 4673826 2349504..2351267 1 NC_008782.1 KEGG: bms:BRA0377 hypothetical protein; hypothetical protein 2351267 4673826 Ajs_2217 Acidovorax sp. JS42 hypothetical protein YP_986458.1 2349504 D 232721 CDS YP_986459.1 121594563 4673756 2351304..2353832 1 NC_008782.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dsy:DSY2854 hypothetical protein; hypothetical protein 2353832 4673756 Ajs_2218 Acidovorax sp. JS42 hypothetical protein YP_986459.1 2351304 D 232721 CDS YP_986460.1 121594564 4673742 complement(2354027..2355448) 1 NC_008782.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: ppu:PP_3868 group II intron-encoding maturase; RNA-directed DNA polymerase 2355448 4673742 Ajs_2219 Acidovorax sp. JS42 RNA-directed DNA polymerase YP_986460.1 2354027 R 232721 CDS YP_986461.1 121594565 4673677 complement(2355919..2358189) 1 NC_008782.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: eba:ebA2431 conserved plasmid related protein; helicase domain-containing protein 2358189 4673677 Ajs_2220 Acidovorax sp. JS42 helicase domain-containing protein YP_986461.1 2355919 R 232721 CDS YP_986462.1 121594566 4673490 complement(2358301..2358606) 1 NC_008782.1 KEGG: eba:ebB75 hypothetical protein; hypothetical protein 2358606 4673490 Ajs_2221 Acidovorax sp. JS42 hypothetical protein YP_986462.1 2358301 R 232721 CDS YP_986463.1 121594567 4673440 complement(2358708..2359817) 1 NC_008782.1 KEGG: eba:ebA2433 conserved hypothetical plasmid protein; hypothetical protein 2359817 4673440 Ajs_2222 Acidovorax sp. JS42 hypothetical protein YP_986463.1 2358708 R 232721 CDS YP_986464.1 121594568 4674550 complement(2359883..2360533) 1 NC_008782.1 KEGG: bxe:Bxe_A1204 hypothetical protein; hypothetical protein 2360533 4674550 Ajs_2223 Acidovorax sp. JS42 hypothetical protein YP_986464.1 2359883 R 232721 CDS YP_986465.1 121594569 4674575 complement(2360619..2360984) 1 NC_008782.1 KEGG: rme:Rmet_2324 hypothetical protein; hypothetical protein 2360984 4674575 Ajs_2224 Acidovorax sp. JS42 hypothetical protein YP_986465.1 2360619 R 232721 CDS YP_986466.1 121594570 4674695 complement(2361074..2361685) 1 NC_008782.1 KEGG: eba:ebA2436 hypothetical protein; hypothetical protein 2361685 4674695 Ajs_2225 Acidovorax sp. JS42 hypothetical protein YP_986466.1 2361074 R 232721 CDS YP_986467.1 121594571 4673137 complement(2361741..2362292) 1 NC_008782.1 KEGG: eba:ebA2440 hypothetical protein; hypothetical protein 2362292 4673137 Ajs_2226 Acidovorax sp. JS42 hypothetical protein YP_986467.1 2361741 R 232721 CDS YP_986468.1 121594572 4673166 complement(2362637..2363002) 1 NC_008782.1 KEGG: eba:ebB76 hypothetical protein; hypothetical protein 2363002 4673166 Ajs_2227 Acidovorax sp. JS42 hypothetical protein YP_986468.1 2362637 R 232721 CDS YP_986469.1 121594573 4672633 complement(2363068..2363865) 1 NC_008782.1 KEGG: eba:ebA2454 hypothetical protein; hypothetical protein 2363865 4672633 Ajs_2228 Acidovorax sp. JS42 hypothetical protein YP_986469.1 2363068 R 232721 CDS YP_986470.1 121594574 4674488 complement(2364156..2364872) 1 NC_008782.1 KEGG: net:Neut_0113 conserved hypothetical protein; hypothetical protein 2364872 4674488 Ajs_2229 Acidovorax sp. JS42 hypothetical protein YP_986470.1 2364156 R 232721 CDS YP_986471.1 121594575 4674507 complement(2365123..2365515) 1 NC_008782.1 KEGG: eba:ebA2455 hypothetical protein; hypothetical protein 2365515 4674507 Ajs_2230 Acidovorax sp. JS42 hypothetical protein YP_986471.1 2365123 R 232721 CDS YP_986472.1 121594576 4672571 complement(2365541..2365777) 1 NC_008782.1 KEGG: bxe:Bxe_A1220 hypothetical protein; hypothetical protein 2365777 4672571 Ajs_2231 Acidovorax sp. JS42 hypothetical protein YP_986472.1 2365541 R 232721 CDS YP_986473.1 121594577 4672413 complement(2366559..2368574) 1 NC_008782.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 2368574 4672413 Ajs_2233 Acidovorax sp. JS42 DNA topoisomerase III YP_986473.1 2366559 R 232721 CDS YP_986474.1 121594578 4672228 complement(2368869..2369252) 1 NC_008782.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2369252 4672228 Ajs_2234 Acidovorax sp. JS42 single-stranded DNA-binding protein YP_986474.1 2368869 R 232721 CDS YP_986475.1 121594579 4671963 complement(2369249..2369800) 1 NC_008782.1 KEGG: eba:ebA2461 hypothetical protein; hypothetical protein 2369800 4671963 Ajs_2235 Acidovorax sp. JS42 hypothetical protein YP_986475.1 2369249 R 232721 CDS YP_986476.1 121594580 4674222 complement(2369797..2370576) 1 NC_008782.1 KEGG: eba:ebA2462 hypothetical protein; hypothetical protein 2370576 4674222 Ajs_2236 Acidovorax sp. JS42 hypothetical protein YP_986476.1 2369797 R 232721 CDS YP_986477.1 121594581 4671836 complement(2370700..2370891) 1 NC_008782.1 KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein 2370891 4671836 Ajs_2237 Acidovorax sp. JS42 hypothetical protein YP_986477.1 2370700 R 232721 CDS YP_986478.1 121594582 4671829 complement(2370920..2371207) 1 NC_008782.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: plu:plu2210 hypothetical protein; addiction module antitoxin 2371207 4671829 Ajs_2238 Acidovorax sp. JS42 addiction module antitoxin YP_986478.1 2370920 R 232721 CDS YP_986479.1 121594583 4671802 complement(2371194..2371493) 1 NC_008782.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: aba:Acid345_2090 RelB antitoxin; addiction module antitoxin 2371493 4671802 Ajs_2239 Acidovorax sp. JS42 addiction module antitoxin YP_986479.1 2371194 R 232721 CDS YP_986480.1 121594584 4671602 complement(2372700..2375615) 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3; transposase Tn3 family protein 2375615 4671602 Ajs_2241 Acidovorax sp. JS42 transposase Tn3 family protein YP_986480.1 2372700 R 232721 CDS YP_986481.1 121594585 4671476 2375932..2376354 1 NC_008782.1 KEGG: pol:Bpro_2151 hypothetical protein; hypothetical protein 2376354 4671476 Ajs_2242 Acidovorax sp. JS42 hypothetical protein YP_986481.1 2375932 D 232721 CDS YP_986482.1 121594586 4674161 complement(2376372..2378915) 1 NC_008782.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein 2378915 4674161 Ajs_2243 Acidovorax sp. JS42 radical SAM domain-containing protein YP_986482.1 2376372 R 232721 CDS YP_986483.1 121594587 4674224 2378955..2379623 1 NC_008782.1 PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein; hypothetical protein 2379623 4674224 Ajs_2244 Acidovorax sp. JS42 hypothetical protein YP_986483.1 2378955 D 232721 CDS YP_986484.1 121594588 4671225 2379733..2381145 1 NC_008782.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2381145 4671225 Ajs_2245 Acidovorax sp. JS42 dihydrolipoamide dehydrogenase YP_986484.1 2379733 D 232721 CDS YP_986485.1 121594589 4671103 2381302..2381505 1 NC_008782.1 hypothetical protein 2381505 4671103 Ajs_2246 Acidovorax sp. JS42 hypothetical protein YP_986485.1 2381302 D 232721 CDS YP_986486.1 121594590 4671041 complement(2381564..2382691) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1468 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2382691 4671041 Ajs_2247 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_986486.1 2381564 R 232721 CDS YP_986487.1 121594591 4670974 complement(2382713..2384263) 1 NC_008782.1 PFAM: Amidase; KEGG: pol:Bpro_3826 amidase; amidase 2384263 4670974 Ajs_2248 Acidovorax sp. JS42 amidase YP_986487.1 2382713 R 232721 CDS YP_986488.1 121594592 4670941 complement(2384307..2385284) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065; hypothetical protein 2385284 4670941 Ajs_2249 Acidovorax sp. JS42 hypothetical protein YP_986488.1 2384307 R 232721 CDS YP_986489.1 121594593 4670779 complement(2385355..2386710) 1 NC_008782.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 2386710 4670779 Ajs_2250 Acidovorax sp. JS42 D-serine dehydratase YP_986489.1 2385355 R 232721 CDS YP_986490.1 121594594 4674130 2386808..2387761 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 2387761 4674130 Ajs_2251 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986490.1 2386808 D 232721 CDS YP_986491.1 121594595 4670617 2387813..2388115 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_4900 transcriptional regulator, XRE family; XRE family transcriptional regulator 2388115 4670617 Ajs_2252 Acidovorax sp. JS42 XRE family transcriptional regulator YP_986491.1 2387813 D 232721 CDS YP_986492.1 121594596 4670650 2388140..2389453 1 NC_008782.1 PFAM: HipA domain protein; KEGG: rme:Rmet_4901 HipA-like protein; HipA domain-containing protein 2389453 4670650 Ajs_2253 Acidovorax sp. JS42 HipA domain-containing protein YP_986492.1 2388140 D 232721 CDS YP_986493.1 121594597 4670682 complement(2389686..2390585) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ava:Ava_4466 transcriptional regulator, LysR family; LysR family transcriptional regulator 2390585 4670682 Ajs_2254 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986493.1 2389686 R 232721 CDS YP_986494.1 121594598 4670742 2390681..2391748 1 NC_008782.1 PFAM: protein of unknown function DUF897; KEGG: chu:CHU_2730 permease; hypothetical protein 2391748 4670742 Ajs_2255 Acidovorax sp. JS42 hypothetical protein YP_986494.1 2390681 D 232721 CDS YP_986495.1 121594599 4670824 complement(2391869..2392432) 1 NC_008782.1 PFAM: Ankyrin; KEGG: bxe:Bxe_B1343 ankyrin domain protein; ankyrin 2392432 4670824 Ajs_2256 Acidovorax sp. JS42 ankyrin YP_986495.1 2391869 R 232721 CDS YP_986496.1 121594600 4670850 complement(2392503..2392835) 1 NC_008782.1 PFAM: small multidrug resistance protein; KEGG: mfa:Mfla_1027 small multidrug resistance protein; small multidrug resistance protein 2392835 4670850 Ajs_2257 Acidovorax sp. JS42 small multidrug resistance protein YP_986496.1 2392503 R 232721 CDS YP_986497.1 121594601 4670880 complement(2392941..2393786) 1 NC_008782.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A0050 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 2393786 4670880 Ajs_2258 Acidovorax sp. JS42 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_986497.1 2392941 R 232721 CDS YP_986498.1 121594602 4670898 2393938..2394546 1 NC_008782.1 PFAM: Chromate transporter; KEGG: rfr:Rfer_2756 chromate transporter; chromate transporter 2394546 4670898 Ajs_2259 Acidovorax sp. JS42 chromate transporter YP_986498.1 2393938 D 232721 CDS YP_986499.1 121594603 4670948 2394554..2395156 1 NC_008782.1 PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter; chromate transporter 2395156 4670948 Ajs_2260 Acidovorax sp. JS42 chromate transporter YP_986499.1 2394554 D 232721 CDS YP_986500.1 121594604 4670979 complement(2395164..2395835) 1 NC_008782.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: rso:RSp1191 probable 3,4-dihydroxy-2-butanone 4-phosphate synthase protein; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2395835 4670979 Ajs_2261 Acidovorax sp. JS42 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_986500.1 2395164 R 232721 CDS YP_986501.1 121594605 4671070 complement(2396157..2396939) 1 NC_008782.1 PFAM: Silent information regulator protein Sir2; KEGG: reu:Reut_A2070 silent information regulator protein Sir2; silent information regulator protein Sir2 2396939 4671070 Ajs_2262 Acidovorax sp. JS42 silent information regulator protein Sir2 YP_986501.1 2396157 R 232721 CDS YP_986502.1 121594606 4670567 complement(2396936..2397604) 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4769 transcriptional regulator, TetR family; TetR family transcriptional regulator 2397604 4670567 Ajs_2263 Acidovorax sp. JS42 TetR family transcriptional regulator YP_986502.1 2396936 R 232721 CDS YP_986503.1 121594607 4671149 2397693..2398046 1 NC_008782.1 PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein; hypothetical protein 2398046 4671149 Ajs_2264 Acidovorax sp. JS42 hypothetical protein YP_986503.1 2397693 D 232721 CDS YP_986504.1 121594608 4671247 2398104..2398556 1 NC_008782.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nha:Nham_3665 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2398556 4671247 Ajs_2265 Acidovorax sp. JS42 3-demethylubiquinone-9 3-methyltransferase YP_986504.1 2398104 D 232721 CDS YP_986505.1 121594609 4671323 2398556..2399026 1 NC_008782.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr2292 hypothetical protein; activator of Hsp90 ATPase 1 family protein 2399026 4671323 Ajs_2266 Acidovorax sp. JS42 activator of Hsp90 ATPase 1 family protein YP_986505.1 2398556 D 232721 CDS YP_986506.1 121594610 4671235 2399093..2399545 1 NC_008782.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gme:Gmet_2483 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2399545 4671235 Ajs_2267 Acidovorax sp. JS42 3-demethylubiquinone-9 3-methyltransferase YP_986506.1 2399093 D 232721 CDS YP_986507.1 121594611 4671284 complement(2399566..2400312) 1 NC_008782.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3; RNA methyltransferase 2400312 4671284 Ajs_2268 Acidovorax sp. JS42 RNA methyltransferase YP_986507.1 2399566 R 232721 CDS YP_986508.1 121594612 4671928 2400559..2401761 1 NC_008782.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2401761 4671928 Ajs_2269 Acidovorax sp. JS42 serine/threonine transporter SstT YP_986508.1 2400559 D 232721 CDS YP_986509.1 121594613 4671541 complement(2401872..2402624) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related; ABC transporter-like protein 2402624 4671541 Ajs_2270 Acidovorax sp. JS42 ABC transporter-like protein YP_986509.1 2401872 R 232721 CDS YP_986510.1 121594614 4671384 2402625..2403272 1 NC_008782.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rfr:Rfer_2424 lipolytic enzyme, G-D-S-L; GDSL family lipase 2403272 4671384 Ajs_2271 Acidovorax sp. JS42 GDSL family lipase YP_986510.1 2402625 D 232721 CDS YP_986511.1 121594615 4671379 complement(2403288..2404124) 1 NC_008782.1 KEGG: rfr:Rfer_3771 integral membrane protein; integral membrane protein 2404124 4671379 Ajs_2272 Acidovorax sp. JS42 integral membrane protein YP_986511.1 2403288 R 232721 CDS YP_986512.1 121594616 4671375 complement(2404219..2405466) 1 NC_008782.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rfr:Rfer_2294 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; cystathionine beta-lyase 2405466 4671375 Ajs_2273 Acidovorax sp. JS42 cystathionine beta-lyase YP_986512.1 2404219 R 232721 CDS YP_986513.1 121594617 4671298 complement(2405500..2405952) 1 NC_008782.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated; transport protein 2405952 4671298 Ajs_2274 Acidovorax sp. JS42 transport protein YP_986513.1 2405500 R 232721 CDS YP_986514.1 121594618 4671594 2406107..2407849 1 NC_008782.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 putative sulfate transporter; sulfate transporter 2407849 4671594 Ajs_2275 Acidovorax sp. JS42 sulfate transporter YP_986514.1 2406107 D 232721 CDS YP_986515.1 121594619 4671204 2407884..2408657 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1305 diguanylate cyclase; diguanylate cyclase 2408657 4671204 Ajs_2276 Acidovorax sp. JS42 diguanylate cyclase YP_986515.1 2407884 D 232721 CDS YP_986516.1 121594620 4671656 2408671..2409558 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rfr:Rfer_1304 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2409558 4671656 Ajs_2277 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_986516.1 2408671 D 232721 CDS YP_986517.1 121594621 4671713 complement(2409617..2410522) 1 NC_008782.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like; pirin domain-containing protein 2410522 4671713 Ajs_2278 Acidovorax sp. JS42 pirin domain-containing protein YP_986517.1 2409617 R 232721 CDS YP_986518.1 121594622 4671721 complement(2410519..2410986) 1 NC_008782.1 PFAM: OsmC family protein; KEGG: pol:Bpro_2898 OsmC-like protein; OsmC family protein 2410986 4671721 Ajs_2279 Acidovorax sp. JS42 OsmC family protein YP_986518.1 2410519 R 232721 CDS YP_986519.1 121594623 4671775 complement(2413626..2414612) 1 NC_008782.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase 2414612 4671775 Ajs_2281 Acidovorax sp. JS42 muramoyltetrapeptide carboxypeptidase YP_986519.1 2413626 R 232721 CDS YP_986520.1 121594624 4671787 complement(2414605..2415690) 1 NC_008782.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase 2415690 4671787 Ajs_2282 Acidovorax sp. JS42 CMP/dCMP deaminase YP_986520.1 2414605 R 232721 CDS YP_986521.1 121594625 4671807 complement(2415744..2415980) 1 NC_008782.1 KEGG: rfr:Rfer_2809 hypothetical protein; hypothetical protein 2415980 4671807 Ajs_2283 Acidovorax sp. JS42 hypothetical protein YP_986521.1 2415744 R 232721 CDS YP_986522.1 121594626 4671906 complement(2416009..2417223) 1 NC_008782.1 PFAM: sodium/glutamate symporter; KEGG: aci:ACIAD0804 sodium/glutamate symport carrier protein; sodium/glutamate symporter 2417223 4671906 Ajs_2284 Acidovorax sp. JS42 sodium/glutamate symporter YP_986522.1 2416009 R 232721 CDS YP_986523.1 121594627 4671915 2417354..2419432 1 NC_008782.1 PFAM: peptidase U32; KEGG: rfr:Rfer_2414 peptidase U32; peptidase U32 2419432 4671915 Ajs_2285 Acidovorax sp. JS42 peptidase U32 YP_986523.1 2417354 D 232721 CDS YP_986524.1 121594628 4672484 2419729..2421009 1 NC_008782.1 KEGG: reu:Reut_B4968 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 2421009 4672484 Ajs_2286 Acidovorax sp. JS42 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_986524.1 2419729 D 232721 CDS YP_986525.1 121594629 4672058 complement(2421078..2422439) 1 NC_008782.1 PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein 2422439 4672058 Ajs_2287 Acidovorax sp. JS42 hypothetical protein YP_986525.1 2421078 R 232721 CDS YP_986526.1 121594630 4672086 complement(2422459..2423460) 1 NC_008782.1 KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein; hypothetical protein 2423460 4672086 Ajs_2288 Acidovorax sp. JS42 hypothetical protein YP_986526.1 2422459 R 232721 CDS YP_986527.1 121594631 4672098 complement(2423757..2424344) 1 NC_008782.1 PFAM: OmpW family protein; OmpF family protein; KEGG: pol:Bpro_0280 OmpW; OmpW family protein 2424344 4672098 Ajs_2289 Acidovorax sp. JS42 OmpW family protein YP_986527.1 2423757 R 232721 CDS YP_986528.1 121594632 4672129 complement(2424498..2425496) 1 NC_008782.1 PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein 2425496 4672129 Ajs_2290 Acidovorax sp. JS42 hypothetical protein YP_986528.1 2424498 R 232721 CDS YP_986529.1 121594633 4672142 2425612..2426043 1 NC_008782.1 KEGG: fra:Francci3_4182 hypothetical protein; hypothetical protein 2426043 4672142 Ajs_2291 Acidovorax sp. JS42 hypothetical protein YP_986529.1 2425612 D 232721 CDS YP_986530.1 121594634 4672188 2426183..2430208 1 NC_008782.1 KEGG: bpm:BURPS1710b_2462 hypothetical protein; hypothetical protein 2430208 4672188 Ajs_2292 Acidovorax sp. JS42 hypothetical protein YP_986530.1 2426183 D 232721 CDS YP_986531.1 121594635 4672222 2430275..2431090 1 NC_008782.1 KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 2431090 4672222 Ajs_2293 Acidovorax sp. JS42 methionine aminopeptidase YP_986531.1 2430275 D 232721 CDS YP_986532.1 121594636 4672277 2431150..2433804 1 NC_008782.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2433804 4672277 Ajs_2294 Acidovorax sp. JS42 PII uridylyl-transferase YP_986532.1 2431150 D 232721 CDS YP_986533.1 121594637 4672314 complement(2433863..2434402) 1 NC_008782.1 KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2434402 4672314 Ajs_2295 Acidovorax sp. JS42 peptide deformylase YP_986533.1 2433863 R 232721 CDS YP_986534.1 121594638 4672355 2434508..2434927 1 NC_008782.1 PFAM: protein of unknown function DUF454; KEGG: xcb:XC_0660 hypothetical protein; hypothetical protein 2434927 4672355 Ajs_2296 Acidovorax sp. JS42 hypothetical protein YP_986534.1 2434508 D 232721 CDS YP_986535.1 121594639 4672442 complement(2435326..2436585) 1 NC_008782.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2436585 4672442 Ajs_2297 Acidovorax sp. JS42 isocitrate dehydrogenase YP_986535.1 2435326 R 232721 CDS YP_986536.1 121594640 4672648 2436692..2437123 1 NC_008782.1 KEGG: rfr:Rfer_2762 protein tyrosine phosphatase, receptor type, F-like; hypothetical protein 2437123 4672648 Ajs_2298 Acidovorax sp. JS42 hypothetical protein YP_986536.1 2436692 D 232721 CDS YP_986537.1 121594641 4672609 2437210..2437725 1 NC_008782.1 PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192; hypothetical protein 2437725 4672609 Ajs_2299 Acidovorax sp. JS42 hypothetical protein YP_986537.1 2437210 D 232721 CDS YP_986538.1 121594642 4672785 complement(2437959..2440193) 1 NC_008782.1 KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2440193 4672785 Ajs_2300 Acidovorax sp. JS42 isocitrate dehydrogenase YP_986538.1 2437959 R 232721 CDS YP_986539.1 121594643 4672805 complement(2440538..2441119) 1 NC_008782.1 PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase; superoxide dismutase 2441119 4672805 Ajs_2301 Acidovorax sp. JS42 superoxide dismutase YP_986539.1 2440538 R 232721 CDS YP_986540.1 121594644 4672830 complement(2441267..2442604) 1 NC_008782.1 KEGG: rfr:Rfer_3152 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 2442604 4672830 Ajs_2302 Acidovorax sp. JS42 exodeoxyribonuclease VII large subunit YP_986540.1 2441267 R 232721 CDS YP_986541.1 121594645 4672849 2442981..2443619 1 NC_008782.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2443619 4672849 Ajs_2303 Acidovorax sp. JS42 MotA/TolQ/ExbB proton channel YP_986541.1 2442981 D 232721 CDS YP_986542.1 121594646 4672860 2443651..2444076 1 NC_008782.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2444076 4672860 Ajs_2304 Acidovorax sp. JS42 biopolymer transport protein ExbD/TolR YP_986542.1 2443651 D 232721 CDS YP_986543.1 121594647 4672922 2444087..2445103 1 NC_008782.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2445103 lpxK 4672922 lpxK Acidovorax sp. JS42 tetraacyldisaccharide 4'-kinase YP_986543.1 2444087 D 232721 CDS YP_986544.1 121594648 4672979 2445112..2445294 1 NC_008782.1 PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; hypothetical protein 2445294 4672979 Ajs_2306 Acidovorax sp. JS42 hypothetical protein YP_986544.1 2445112 D 232721 CDS YP_986545.1 121594649 4673036 2445291..2446079 1 NC_008782.1 KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2446079 4673036 Ajs_2307 Acidovorax sp. JS42 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_986545.1 2445291 D 232721 CDS YP_986546.1 121594650 4673051 2446201..2446857 1 NC_008782.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2446857 adk 4673051 adk Acidovorax sp. JS42 adenylate kinase YP_986546.1 2446201 D 232721 CDS YP_986547.1 121594651 4673074 complement(2446945..2447916) 1 NC_008782.1 PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase; asparaginase 2447916 4673074 Ajs_2309 Acidovorax sp. JS42 asparaginase YP_986547.1 2446945 R 232721 CDS YP_986548.1 121594652 4673084 2447999..2448673 1 NC_008782.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 2448673 4673084 Ajs_2310 Acidovorax sp. JS42 LexA repressor YP_986548.1 2447999 D 232721 CDS YP_986549.1 121594653 4673195 2448835..2449236 1 NC_008782.1 hypothetical protein 2449236 4673195 Ajs_2311 Acidovorax sp. JS42 hypothetical protein YP_986549.1 2448835 D 232721 CDS YP_986550.1 121594654 4673964 2449358..2449858 1 NC_008782.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 2449858 4673964 Ajs_2312 Acidovorax sp. JS42 pyridoxamine 5'-phosphate oxidase-like protein YP_986550.1 2449358 D 232721 CDS YP_986551.1 121594655 4673894 complement(2450088..2454113) 1 NC_008782.1 KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 2454113 4673894 Ajs_2313 Acidovorax sp. JS42 ATP-dependent helicase HrpA YP_986551.1 2450088 R 232721 CDS YP_986552.1 121594656 4673372 complement(2454161..2455501) 1 NC_008782.1 PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding; SAF domain; KEGG: pol:Bpro_1713 oxidoreductase-like; SAF domain-containing protein 2455501 4673372 Ajs_2314 Acidovorax sp. JS42 SAF domain-containing protein YP_986552.1 2454161 R 232721 CDS YP_986553.1 121594657 4673404 2455792..2456979 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: eca:ECA1908 putative membrane-attached phosphoesterase; metallophosphoesterase 2456979 4673404 Ajs_2315 Acidovorax sp. JS42 metallophosphoesterase YP_986553.1 2455792 D 232721 CDS YP_986554.1 121594658 4673439 complement(2457163..2457861) 1 NC_008782.1 PFAM: nitroreductase; KEGG: bxe:Bxe_B0222 putative nitroreductase; nitroreductase 2457861 4673439 Ajs_2316 Acidovorax sp. JS42 nitroreductase YP_986554.1 2457163 R 232721 CDS YP_986555.1 121594659 4673519 complement(2457864..2459033) 1 NC_008782.1 KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 2459033 4673519 Ajs_2317 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_986555.1 2457864 R 232721 CDS YP_986556.1 121594660 4673568 complement(2459030..2460514) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2460514 4673568 Ajs_2318 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_986556.1 2459030 R 232721 CDS YP_986557.1 121594661 4673590 complement(2460511..2461095) 1 NC_008782.1 PFAM: BioY protein; KEGG: rsp:RSP_2173 putative biotin biosynthesis protein BioY; BioY protein 2461095 4673590 Ajs_2319 Acidovorax sp. JS42 BioY protein YP_986557.1 2460511 R 232721 CDS YP_986558.1 121594662 4673623 complement(2461132..2461725) 1 NC_008782.1 PFAM: cobalt transport protein; KEGG: rsp:RSP_2174 putative ABC transporter, inner membrane subunit; cobalt transport protein 2461725 4673623 Ajs_2320 Acidovorax sp. JS42 cobalt transport protein YP_986558.1 2461132 R 232721 CDS YP_986559.1 121594663 4673703 complement(2461743..2462597) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2175 ABC transporter, ATPase subunit; ABC transporter-like protein 2462597 4673703 Ajs_2321 Acidovorax sp. JS42 ABC transporter-like protein YP_986559.1 2461743 R 232721 CDS YP_986560.1 121594664 4673725 2462772..2464049 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_2369 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2464049 4673725 Ajs_2322 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986560.1 2462772 D 232721 CDS YP_986561.1 121594665 4673741 complement(2464130..2464477) 1 NC_008782.1 KEGG: bba:Bd1787 hypothetical protein; hypothetical protein 2464477 4673741 Ajs_2323 Acidovorax sp. JS42 hypothetical protein YP_986561.1 2464130 R 232721 CDS YP_986562.1 121594666 4673766 2464583..2465251 1 NC_008782.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_0453 methyltransferase type 12; type 11 methyltransferase 2465251 4673766 Ajs_2324 Acidovorax sp. JS42 type 11 methyltransferase YP_986562.1 2464583 D 232721 CDS YP_986563.1 121594667 4673790 complement(2465352..2466326) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 2466326 4673790 Ajs_2325 Acidovorax sp. JS42 hypothetical protein YP_986563.1 2465352 R 232721 CDS YP_986564.1 121594668 4673812 2466829..2468037 1 NC_008782.1 PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like; acyltransferase 3 2468037 4673812 Ajs_2326 Acidovorax sp. JS42 acyltransferase 3 YP_986564.1 2466829 D 232721 CDS YP_986565.1 121594669 4673960 2468324..2469670 1 NC_008782.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2469670 4673960 Ajs_2327 Acidovorax sp. JS42 N-acetylglutamate synthase YP_986565.1 2468324 D 232721 CDS YP_986566.1 121594670 4674001 complement(2469674..2470564) 1 NC_008782.1 PFAM: beta-lactamase; KEGG: mes:Meso_2215 beta-lactamase; beta-lactamase 2470564 4674001 Ajs_2328 Acidovorax sp. JS42 beta-lactamase YP_986566.1 2469674 R 232721 CDS YP_986567.1 121594671 4674059 2470668..2471534 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sal:Sala_1903 transcriptional regulator, LysR family; LysR family transcriptional regulator 2471534 4674059 Ajs_2329 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986567.1 2470668 D 232721 CDS YP_986568.1 121594672 4674191 2471629..2472030 1 NC_008782.1 KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein 2472030 4674191 Ajs_2330 Acidovorax sp. JS42 hypothetical protein YP_986568.1 2471629 D 232721 CDS YP_986569.1 121594673 4673655 2474422..2475975 1 NC_008782.1 PFAM: PepSY-associated TM helix domain protein; KEGG: bpe:BP2921 hypothetical protein; PepSY-associated TM helix domain-containing protein 2475975 4673655 Ajs_2332 Acidovorax sp. JS42 PepSY-associated TM helix domain-containing protein YP_986569.1 2474422 D 232721 CDS YP_986570.1 121594674 4673562 2476001..2476672 1 NC_008782.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like; glutaredoxin 2476672 4673562 Ajs_2333 Acidovorax sp. JS42 glutaredoxin YP_986570.1 2476001 D 232721 CDS YP_986571.1 121594675 4673276 complement(2476759..2477283) 1 NC_008782.1 PFAM: Disulphide bond formation protein DsbB; KEGG: rfr:Rfer_2104 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 2477283 4673276 Ajs_2334 Acidovorax sp. JS42 disulfide bond formation protein DsbB YP_986571.1 2476759 R 232721 CDS YP_986572.1 121594676 4673512 complement(2477346..2478473) 1 NC_008782.1 KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 2478473 4673512 Ajs_2335 Acidovorax sp. JS42 sulfate ABC transporter ATPase YP_986572.1 2477346 R 232721 CDS YP_986573.1 121594677 4673472 complement(2478485..2479396) 1 NC_008782.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter inner membrane subunit CysW 2479396 4673472 Ajs_2336 Acidovorax sp. JS42 sulfate ABC transporter inner membrane subunit CysW YP_986573.1 2478485 R 232721 CDS YP_986574.1 121594678 4673444 complement(2479393..2480244) 1 NC_008782.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1761 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter inner membrane subunit CysT 2480244 4673444 Ajs_2337 Acidovorax sp. JS42 sulfate ABC transporter inner membrane subunit CysT YP_986574.1 2479393 R 232721 CDS YP_986575.1 121594679 4673430 complement(2480392..2481399) 1 NC_008782.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1762 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 2481399 4673430 Ajs_2338 Acidovorax sp. JS42 sulfate ABC transporter periplasmic sulfate-binding protein YP_986575.1 2480392 R 232721 CDS YP_986576.1 121594680 4673429 complement(2481680..2482633) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family; LysR family transcriptional regulator 2482633 4673429 Ajs_2339 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986576.1 2481680 R 232721 CDS YP_986577.1 121594681 4673392 2482761..2483411 1 NC_008782.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase; (acyl-carrier-protein) phosphodiesterase 2483411 4673392 Ajs_2340 Acidovorax sp. JS42 (acyl-carrier-protein) phosphodiesterase YP_986577.1 2482761 D 232721 CDS YP_986578.1 121594682 4673223 complement(2483535..2484086) 1 NC_008782.1 PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2484086 4673223 Ajs_2341 Acidovorax sp. JS42 NADPH-dependent FMN reductase YP_986578.1 2483535 R 232721 CDS YP_986579.1 121594683 4673210 complement(2484253..2485053) 1 NC_008782.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rfr:Rfer_1770 lipoprotein YaeC; YaeC family lipoprotein 2485053 4673210 Ajs_2342 Acidovorax sp. JS42 YaeC family lipoprotein YP_986579.1 2484253 R 232721 CDS YP_986580.1 121594684 4673205 complement(2485258..2486364) 1 NC_008782.1 KEGG: bpa:BPP0392 hypothetical protein; hypothetical protein 2486364 4673205 Ajs_2343 Acidovorax sp. JS42 hypothetical protein YP_986580.1 2485258 R 232721 CDS YP_986581.1 121594685 4673214 complement(2486526..2487191) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2368 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2487191 4673214 Ajs_2344 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_986581.1 2486526 R 232721 CDS YP_986582.1 121594686 4673216 complement(2487202..2488248) 1 NC_008782.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 2488248 metN 4673216 metN Acidovorax sp. JS42 DL-methionine transporter ATP-binding subunit YP_986582.1 2487202 R 232721 CDS YP_986583.1 121594687 4673218 2488789..2490021 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmc:Mmcs_4056 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2490021 4673218 Ajs_2346 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986583.1 2488789 D 232721 CDS YP_986584.1 121594688 4673221 complement(2490031..2490438) 1 NC_008782.1 KEGG: pol:Bpro_2271 membrane protein-like; membrane protein 2490438 4673221 Ajs_2347 Acidovorax sp. JS42 membrane protein YP_986584.1 2490031 R 232721 CDS YP_986585.1 121594689 4673023 complement(2490503..2491093) 1 NC_008782.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2491093 recR 4673023 recR Acidovorax sp. JS42 recombination protein RecR YP_986585.1 2490503 R 232721 CDS YP_986586.1 121594690 4672975 complement(2491252..2491584) 1 NC_008782.1 PFAM: conserved hypothetical protein 103; KEGG: rfr:Rfer_1458 conserved hypothetical protein 103; hypothetical protein 2491584 4672975 Ajs_2349 Acidovorax sp. JS42 hypothetical protein YP_986586.1 2491252 R 232721 CDS YP_986587.1 121594691 4672974 complement(2491615..2493654) 1 NC_008782.1 KEGG: rfr:Rfer_1457 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 2493654 4672974 Ajs_2350 Acidovorax sp. JS42 DNA polymerase III subunits gamma and tau YP_986587.1 2491615 R 232721 CDS YP_986588.1 121594692 4672940 2493709..2494170 1 NC_008782.1 hypothetical protein 2494170 4672940 Ajs_2351 Acidovorax sp. JS42 hypothetical protein YP_986588.1 2493709 D 232721 CDS YP_986589.1 121594693 4672881 2494519..2495217 1 NC_008782.1 hypothetical protein 2495217 4672881 Ajs_2352 Acidovorax sp. JS42 hypothetical protein YP_986589.1 2494519 D 232721 CDS YP_986590.1 121594694 4672828 complement(2495303..2496646) 1 NC_008782.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2266 HI0933-like protein; hypothetical protein 2496646 4672828 Ajs_2353 Acidovorax sp. JS42 hypothetical protein YP_986590.1 2495303 R 232721 CDS YP_986591.1 121594695 4672817 complement(2496660..2497355) 1 NC_008782.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb2135 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; type 11 methyltransferase 2497355 4672817 Ajs_2354 Acidovorax sp. JS42 type 11 methyltransferase YP_986591.1 2496660 R 232721 CDS YP_986592.1 121594696 4672637 complement(2497459..2500764) 1 NC_008782.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase; UvrD/REP helicase 2500764 4672637 Ajs_2355 Acidovorax sp. JS42 UvrD/REP helicase YP_986592.1 2497459 R 232721 CDS YP_986593.1 121594697 4672526 complement(2500757..2503327) 1 NC_008782.1 KEGG: pol:Bpro_2264 RecB family exonuclease-like; exonuclease-like protein 2503327 4672526 Ajs_2356 Acidovorax sp. JS42 exonuclease-like protein YP_986593.1 2500757 R 232721 CDS YP_986594.1 121594698 4672778 2503443..2503775 1 NC_008782.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; thioredoxin 2503775 4672778 Ajs_2357 Acidovorax sp. JS42 thioredoxin YP_986594.1 2503443 D 232721 CDS YP_986595.1 121594699 4672600 2504015..2505277 1 NC_008782.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2505277 rho 4672600 rho Acidovorax sp. JS42 transcription termination factor Rho YP_986595.1 2504015 D 232721 CDS YP_986596.1 121594700 4672605 2505494..2506972 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_1686 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 2506972 4672605 Ajs_2359 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_986596.1 2505494 D 232721 CDS YP_986597.1 121594701 4672606 2506993..2508063 1 NC_008782.1 PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_0168 secretion protein HlyD; secretion protein HlyD family protein 2508063 4672606 Ajs_2360 Acidovorax sp. JS42 secretion protein HlyD family protein YP_986597.1 2506993 D 232721 CDS YP_986598.1 121594702 4672608 2508088..2510898 1 NC_008782.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: mfa:Mfla_0167 response regulator receiver domain protein (CheY-like); ABC transporter-like protein 2510898 4672608 Ajs_2361 Acidovorax sp. JS42 ABC transporter-like protein YP_986598.1 2508088 D 232721 CDS YP_986599.1 121594703 4672610 2510902..2512050 1 NC_008782.1 PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_0166 ABC-2; ABC-2 type transporter 2512050 4672610 Ajs_2362 Acidovorax sp. JS42 ABC-2 type transporter YP_986599.1 2510902 D 232721 CDS YP_986600.1 121594704 4672611 2512148..2512402 1 NC_008782.1 PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; 50S ribosomal protein L31P 2512402 4672611 Ajs_2363 Acidovorax sp. JS42 50S ribosomal protein L31P YP_986600.1 2512148 D 232721 CDS YP_986601.1 121594705 4672613 2512553..2514250 1 NC_008782.1 KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein; putative inner membrane transmembrane protein 2514250 4672613 Ajs_2364 Acidovorax sp. JS42 putative inner membrane transmembrane protein YP_986601.1 2512553 D 232721 CDS YP_986602.1 121594706 4672614 2514250..2515626 1 NC_008782.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein; MATE efflux family protein 2515626 4672614 Ajs_2365 Acidovorax sp. JS42 MATE efflux family protein YP_986602.1 2514250 D 232721 CDS YP_986603.1 121594707 4672615 complement(2515571..2516968) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_0577 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2516968 4672615 Ajs_2366 Acidovorax sp. JS42 multi-sensor signal transduction histidine kinase YP_986603.1 2515571 R 232721 CDS YP_986604.1 121594708 4672616 complement(2517055..2517762) 1 NC_008782.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2517762 4672616 Ajs_2367 Acidovorax sp. JS42 two component transcriptional regulator YP_986604.1 2517055 R 232721 CDS YP_986605.1 121594709 4672617 complement(2517779..2518480) 1 NC_008782.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2518480 4672617 Ajs_2368 Acidovorax sp. JS42 phosphate uptake regulator PhoU YP_986605.1 2517779 R 232721 CDS YP_986606.1 121594710 4672618 complement(2518495..2519277) 1 NC_008782.1 KEGG: pol:Bpro_2255 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 2519277 4672618 Ajs_2369 Acidovorax sp. JS42 phosphate ABC transporter ATPase YP_986606.1 2518495 R 232721 CDS YP_986607.1 121594711 4672619 complement(2519300..2520181) 1 NC_008782.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 2520181 pstA 4672619 pstA Acidovorax sp. JS42 phosphate transporter permease subunit PtsA YP_986607.1 2519300 R 232721 CDS YP_986608.1 121594712 4672622 complement(2520178..2521191) 1 NC_008782.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter inner membrane subunit PstC 2521191 4672622 Ajs_2371 Acidovorax sp. JS42 phosphate ABC transporter inner membrane subunit PstC YP_986608.1 2520178 R 232721 CDS YP_986609.1 121594713 4672623 complement(2521270..2522310) 1 NC_008782.1 TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein; phosphate ABC transporter periplasmic phosphate-binding protein 2522310 4672623 Ajs_2372 Acidovorax sp. JS42 phosphate ABC transporter periplasmic phosphate-binding protein YP_986609.1 2521270 R 232721 CDS YP_986610.1 121594714 4672624 2522511..2523002 1 NC_008782.1 PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 2523002 4672624 Ajs_2373 Acidovorax sp. JS42 beta-Ig-H3/fasciclin YP_986610.1 2522511 D 232721 CDS YP_986611.1 121594715 4672625 2523034..2524167 1 NC_008782.1 KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2524167 4672625 Ajs_2374 Acidovorax sp. JS42 twin-arginine translocation pathway signal protein YP_986611.1 2523034 D 232721 CDS YP_986612.1 121594716 4672627 2524252..2525733 1 NC_008782.1 PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2525733 4672627 Ajs_2375 Acidovorax sp. JS42 Ppx/GppA phosphatase YP_986612.1 2524252 D 232721 CDS YP_986613.1 121594717 4672628 2525799..2526233 1 NC_008782.1 KEGG: pol:Bpro_2248 hypothetical protein; hypothetical protein 2526233 4672628 Ajs_2376 Acidovorax sp. JS42 hypothetical protein YP_986613.1 2525799 D 232721 CDS YP_986614.1 121594718 4672630 complement(2526285..2526749) 1 NC_008782.1 PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_2018 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 2526749 4672630 Ajs_2377 Acidovorax sp. JS42 phosphohistidine phosphatase SixA YP_986614.1 2526285 R 232721 CDS YP_986615.1 121594719 4672632 complement(2526746..2528917) 1 NC_008782.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2528917 4672632 Ajs_2378 Acidovorax sp. JS42 polyphosphate kinase YP_986615.1 2526746 R 232721 CDS YP_986616.1 121594720 4672634 complement(2529033..2529869) 1 NC_008782.1 KEGG: rfr:Rfer_2028 hypothetical protein; ornithine-acyl[acyl carrier protein] N-acyltransferase 2529869 4672634 Ajs_2379 Acidovorax sp. JS42 ornithine-acyl[acyl carrier protein] N-acyltransferase YP_986616.1 2529033 R 232721 CDS YP_986617.1 121594721 4672635 2530052..2532322 1 NC_008782.1 KEGG: rfr:Rfer_3192 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase 2532322 4672635 Ajs_2380 Acidovorax sp. JS42 diguanylate cyclase/phosphodiesterase YP_986617.1 2530052 D 232721 CDS YP_986618.1 121594722 4672638 complement(2532390..2533724) 1 NC_008782.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2533724 glmM 4672638 glmM Acidovorax sp. JS42 phosphoglucosamine mutase YP_986618.1 2532390 R 232721 CDS YP_986619.1 121594723 4672639 complement(2533737..2534588) 1 NC_008782.1 KEGG: rfr:Rfer_2012 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 2534588 4672639 Ajs_2382 Acidovorax sp. JS42 dihydropteroate synthase YP_986619.1 2533737 R 232721 CDS YP_986620.1 121594724 4672640 complement(2534660..2536579) 1 NC_008782.1 KEGG: rfr:Rfer_2011 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; FtsH peptidase 2536579 4672640 Ajs_2383 Acidovorax sp. JS42 FtsH peptidase YP_986620.1 2534660 R 232721 CDS YP_986621.1 121594725 4672642 complement(2536723..2537436) 1 NC_008782.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 2537436 4672642 Ajs_2384 Acidovorax sp. JS42 ribosomal RNA methyltransferase RrmJ/FtsJ YP_986621.1 2536723 R 232721 CDS YP_986622.1 121594726 4672643 2537463..2537936 1 NC_008782.1 PFAM: protein of unknown function UPF0044; KEGG: rfr:Rfer_2009 protein of unknown function UPF0044; hypothetical protein 2537936 4672643 Ajs_2385 Acidovorax sp. JS42 hypothetical protein YP_986622.1 2537463 D 232721 CDS YP_986623.1 121594727 4672644 2537948..2538709 1 NC_008782.1 KEGG: par:Psyc_1205 hypothetical protein; hypothetical protein 2538709 4672644 Ajs_2386 Acidovorax sp. JS42 hypothetical protein YP_986623.1 2537948 D 232721 CDS YP_986624.1 121594728 4672645 complement(2538767..2539648) 1 NC_008782.1 KEGG: bxe:Bxe_A3699 hypothetical protein; hypothetical protein 2539648 4672645 Ajs_2387 Acidovorax sp. JS42 hypothetical protein YP_986624.1 2538767 R 232721 CDS YP_986625.1 121594729 4672647 complement(2539655..2540068) 1 NC_008782.1 KEGG: rfr:Rfer_2008 hypothetical protein; hypothetical protein 2540068 4672647 Ajs_2388 Acidovorax sp. JS42 hypothetical protein YP_986625.1 2539655 R 232721 CDS YP_986626.1 121594730 4672651 complement(2540080..2540556) 1 NC_008782.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor; transcription elongation factor GreA 2540556 4672651 Ajs_2389 Acidovorax sp. JS42 transcription elongation factor GreA YP_986626.1 2540080 R 232721 CDS YP_986627.1 121594731 4672652 complement(2540684..2543845) 1 NC_008782.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit 2543845 4672652 Ajs_2390 Acidovorax sp. JS42 carbamoyl-phosphate synthase large subunit YP_986627.1 2540684 R 232721 CDS YP_986628.1 121594732 4672658 complement(2543946..2544347) 1 NC_008782.1 hypothetical protein 2544347 4672658 Ajs_2391 Acidovorax sp. JS42 hypothetical protein YP_986628.1 2543946 R 232721 CDS YP_986629.1 121594733 4672659 complement(2544369..2545541) 1 NC_008782.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: rfr:Rfer_2004 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 2545541 4672659 Ajs_2392 Acidovorax sp. JS42 carbamoyl-phosphate synthase small subunit YP_986629.1 2544369 R 232721 CDS YP_986630.1 121594734 4672303 complement(2545884..2546312) 1 NC_008782.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family; MerR family transcriptional regulator 2546312 4672303 Ajs_2393 Acidovorax sp. JS42 MerR family transcriptional regulator YP_986630.1 2545884 R 232721 CDS YP_986631.1 121594735 4672267 complement(2546413..2546763) 1 NC_008782.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2546763 ihfA 4672267 ihfA Acidovorax sp. JS42 integration host factor subunit alpha YP_986631.1 2546413 R 232721 CDS YP_986632.1 121594736 4672194 complement(2546760..2549204) 1 NC_008782.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2549204 pheT 4672194 pheT Acidovorax sp. JS42 phenylalanyl-tRNA synthetase subunit beta YP_986632.1 2546760 R 232721 CDS YP_986633.1 121594737 4671985 complement(2549326..2550378) 1 NC_008782.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2550378 pheS 4671985 pheS Acidovorax sp. JS42 phenylalanyl-tRNA synthetase subunit alpha YP_986633.1 2549326 R 232721 CDS YP_986634.1 121594738 4671958 complement(2550481..2550840) 1 NC_008782.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2550840 rplT 4671958 rplT Acidovorax sp. JS42 50S ribosomal protein L20 YP_986634.1 2550481 R 232721 CDS YP_986635.1 121594739 4671960 complement(2550867..2551070) 1 NC_008782.1 PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35; 50S ribosomal protein L35 2551070 rpmI 4671960 rpmI Acidovorax sp. JS42 50S ribosomal protein L35 YP_986635.1 2550867 R 232721 CDS YP_986636.1 121594740 4671961 complement(2551244..2551861) 1 NC_008782.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rfr:Rfer_1337 translation initiation factor IF-3; translation initiation factor 3 2551861 4671961 Ajs_2399 Acidovorax sp. JS42 translation initiation factor 3 YP_986636.1 2551244 R 232721 CDS YP_986637.1 121594741 4671495 complement(2551921..2553840) 1 NC_008782.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2553840 thrS 4671495 thrS Acidovorax sp. JS42 threonyl-tRNA synthetase YP_986637.1 2551921 R 232721 CDS YP_986638.1 121594742 4671720 complement(2554123..2555454) 1 NC_008782.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: rfr:Rfer_1335 isocitrate lyase; isocitrate lyase 2555454 4671720 Ajs_2401 Acidovorax sp. JS42 isocitrate lyase YP_986638.1 2554123 R 232721 CDS YP_986639.1 121594743 4671434 2555728..2556729 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1956 protein of unknown function DUF6, transmembrane; hypothetical protein 2556729 4671434 Ajs_2402 Acidovorax sp. JS42 hypothetical protein YP_986639.1 2555728 D 232721 CDS YP_986640.1 121594744 4671467 complement(2556739..2557245) 1 NC_008782.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2557245 4671467 Ajs_2403 Acidovorax sp. JS42 ribonuclease activity regulator protein RraA YP_986640.1 2556739 R 232721 CDS YP_986641.1 121594745 4671437 2557469..2557759 1 NC_008782.1 PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b; SWIB/MDM2 domain-containing protein 2557759 4671437 Ajs_2404 Acidovorax sp. JS42 SWIB/MDM2 domain-containing protein YP_986641.1 2557469 D 232721 CDS YP_986642.1 121594746 4671402 2557946..2558218 1 NC_008782.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3050 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 2558218 4671402 Ajs_2405 Acidovorax sp. JS42 BFD/(2Fe-2S)-binding domain-containing protein YP_986642.1 2557946 D 232721 CDS YP_986643.1 121594747 4671583 2558326..2559027 1 NC_008782.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TonB family protein 2559027 4671583 Ajs_2406 Acidovorax sp. JS42 TonB family protein YP_986643.1 2558326 D 232721 CDS YP_986644.1 121594748 4671339 2559045..2559761 1 NC_008782.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2559761 4671339 Ajs_2407 Acidovorax sp. JS42 MotA/TolQ/ExbB proton channel YP_986644.1 2559045 D 232721 CDS YP_986645.1 121594749 4671352 2559768..2560178 1 NC_008782.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2560178 4671352 Ajs_2408 Acidovorax sp. JS42 biopolymer transport protein ExbD/TolR YP_986645.1 2559768 D 232721 CDS YP_986646.1 121594750 4671353 2560375..2560584 1 NC_008782.1 KEGG: pol:Bpro_3054 hypothetical protein; hypothetical protein 2560584 4671353 Ajs_2409 Acidovorax sp. JS42 hypothetical protein YP_986646.1 2560375 D 232721 CDS YP_986647.1 121594751 4671354 complement(2560806..2561213) 1 NC_008782.1 PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 protein of unknown function DUF336; hypothetical protein 2561213 4671354 Ajs_2410 Acidovorax sp. JS42 hypothetical protein YP_986647.1 2560806 R 232721 CDS YP_986648.1 121594752 4671355 2561441..2562133 1 NC_008782.1 PFAM: protein of unknown function UPF0005; KEGG: rfr:Rfer_2776 protein of unknown function UPF0005; hypothetical protein 2562133 4671355 Ajs_2411 Acidovorax sp. JS42 hypothetical protein YP_986648.1 2561441 D 232721 CDS YP_986649.1 121594753 4671357 2562247..2562633 1 NC_008782.1 KEGG: rfr:Rfer_2777 hypothetical protein; hypothetical protein 2562633 4671357 Ajs_2412 Acidovorax sp. JS42 hypothetical protein YP_986649.1 2562247 D 232721 CDS YP_986650.1 121594754 4671358 complement(2562710..2564158) 1 NC_008782.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 2564158 rumA 4671358 rumA Acidovorax sp. JS42 23S rRNA 5-methyluridine methyltransferase YP_986650.1 2562710 R 232721 CDS YP_986651.1 121594755 4671360 complement(2564208..2564534) 1 NC_008782.1 hypothetical protein 2564534 4671360 Ajs_2414 Acidovorax sp. JS42 hypothetical protein YP_986651.1 2564208 R 232721 CDS YP_986652.1 121594756 4671361 2564563..2565231 1 NC_008782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2565231 4671361 Ajs_2415 Acidovorax sp. JS42 ECF subfamily RNA polymerase sigma-24 factor YP_986652.1 2564563 D 232721 CDS YP_986653.1 121594757 4671362 2565348..2566169 1 NC_008782.1 KEGG: eba:ebA4513 hypothetical protein; hypothetical protein 2566169 4671362 Ajs_2416 Acidovorax sp. JS42 hypothetical protein YP_986653.1 2565348 D 232721 CDS YP_986654.1 121594758 4671364 2566306..2566785 1 NC_008782.1 KEGG: tbd:Tbd_2155 hypothetical protein; hypothetical protein 2566785 4671364 Ajs_2417 Acidovorax sp. JS42 hypothetical protein YP_986654.1 2566306 D 232721 CDS YP_986655.1 121594759 4671365 2566862..2567392 1 NC_008782.1 hypothetical protein 2567392 4671365 Ajs_2418 Acidovorax sp. JS42 hypothetical protein YP_986655.1 2566862 D 232721 CDS YP_986656.1 121594760 4671366 complement(2567341..2567820) 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0399 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2567820 4671366 Ajs_2419 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_986656.1 2567341 R 232721 CDS YP_986657.1 121594761 4671367 2568027..2571602 1 NC_008782.1 TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: pfo:Pfl_0452 delta-1-pyrroline-5-carboxylate dehydrogenase 3; delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase 2571602 4671367 Ajs_2420 Acidovorax sp. JS42 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase YP_986657.1 2568027 D 232721 CDS YP_986658.1 121594762 4671368 complement(2571668..2572273) 1 NC_008782.1 KEGG: bcn:Bcen_6095 2',5' RNA ligase; 2',5' RNA ligase 2572273 4671368 Ajs_2421 Acidovorax sp. JS42 2',5' RNA ligase YP_986658.1 2571668 R 232721 CDS YP_986659.1 121594763 4671369 2572688..2573470 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB1245 tetrathionate reductase subunit B; 4Fe-4S ferredoxin 2573470 4671369 Ajs_2422 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_986659.1 2572688 D 232721 CDS YP_986660.1 121594764 4671370 2573488..2574534 1 NC_008782.1 PFAM: Polysulphide reductase, NrfD; KEGG: bbr:BB1244 tetrathionate reductase subunit C; polysulfide reductase NrfD 2574534 4671370 Ajs_2423 Acidovorax sp. JS42 polysulfide reductase NrfD YP_986660.1 2573488 D 232721 CDS YP_986661.1 121594765 4671371 2574635..2577829 1 NC_008782.1 PFAM: molydopterin dinucleotide-binding region; KEGG: bpa:BPP1028 tetrathionate reductase subunit A; molydopterin dinucleotide-binding region 2577829 4671371 Ajs_2424 Acidovorax sp. JS42 molydopterin dinucleotide-binding region YP_986661.1 2574635 D 232721 CDS YP_986662.1 121594766 4671372 2578382..2579275 1 NC_008782.1 KEGG: bca:BCE_0854 hypothetical protein; hypothetical protein 2579275 4671372 Ajs_2425 Acidovorax sp. JS42 hypothetical protein YP_986662.1 2578382 D 232721 CDS YP_986663.1 121594767 4671374 2579272..2581842 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_1150 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 2581842 4671374 Ajs_2426 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_986663.1 2579272 D 232721 CDS YP_986664.1 121594768 4671376 2581835..2582134 1 NC_008782.1 KEGG: bja:bll1929 hypothetical protein; hypothetical protein 2582134 4671376 Ajs_2427 Acidovorax sp. JS42 hypothetical protein YP_986664.1 2581835 D 232721 CDS YP_986665.1 121594769 4671377 complement(2582635..2585202) 1 NC_008782.1 SMART: DEXDc2; helicase c2; KEGG: bps:BPSS0856 hypothetical protein; helicase c2 2585202 4671377 Ajs_2428 Acidovorax sp. JS42 helicase c2 YP_986665.1 2582635 R 232721 CDS YP_986666.1 121594770 4671380 complement(2585199..2586884) 1 NC_008782.1 KEGG: bur:Bcep18194_B1631 hypothetical protein; hypothetical protein 2586884 4671380 Ajs_2429 Acidovorax sp. JS42 hypothetical protein YP_986666.1 2585199 R 232721 CDS YP_986667.1 121594771 4671382 complement(2586950..2587951) 1 NC_008782.1 KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 2587951 4671382 Ajs_2430 Acidovorax sp. JS42 hypothetical protein YP_986667.1 2586950 R 232721 CDS YP_986668.1 121594772 4671383 2588090..2588767 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_2791 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2588767 4671383 Ajs_2431 Acidovorax sp. JS42 two component transcriptional regulator YP_986668.1 2588090 D 232721 CDS YP_986669.1 121594773 4671385 2588764..2590224 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tbd:Tbd_2792 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2590224 4671385 Ajs_2432 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_986669.1 2588764 D 232721 CDS YP_986670.1 121594774 4671386 2590232..2591065 1 NC_008782.1 PFAM: Redoxin domain protein; KEGG: bbr:BB2319 putative thiol:disulfide interchange protein; redoxin domain-containing protein 2591065 4671386 Ajs_2433 Acidovorax sp. JS42 redoxin domain-containing protein YP_986670.1 2590232 D 232721 CDS YP_986671.1 121594775 4671388 complement(2591104..2592006) 1 NC_008782.1 PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4844 beta-lactamase-like; beta-lactamase domain-containing protein 2592006 4671388 Ajs_2434 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_986671.1 2591104 R 232721 CDS YP_986672.1 121594776 4671390 2592114..2592437 1 NC_008782.1 PFAM: regulatory protein, ArsR; KEGG: pfo:Pfl_3459 regulatory protein, ArsR; ArsR family transcriptional regulator 2592437 4671390 Ajs_2435 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_986672.1 2592114 D 232721 CDS YP_986673.1 121594777 4671537 2592442..2592885 1 NC_008782.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 2592885 4671537 Ajs_2436 Acidovorax sp. JS42 hypothetical protein YP_986673.1 2592442 D 232721 CDS YP_986674.1 121594778 4671391 2592908..2593330 1 NC_008782.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bxe:Bxe_B1027 hypothetical protein; hypothetical protein 2593330 4671391 Ajs_2437 Acidovorax sp. JS42 hypothetical protein YP_986674.1 2592908 D 232721 CDS YP_986675.1 121594779 4671392 2593428..2594051 1 NC_008782.1 KEGG: pol:Bpro_4848 protein of unknown function DUF599; hypothetical protein 2594051 4671392 Ajs_2438 Acidovorax sp. JS42 hypothetical protein YP_986675.1 2593428 D 232721 CDS YP_986676.1 121594780 4671394 complement(2594056..2594703) 1 NC_008782.1 hypothetical protein 2594703 4671394 Ajs_2439 Acidovorax sp. JS42 hypothetical protein YP_986676.1 2594056 R 232721 CDS YP_986677.1 121594781 4671530 complement(2594959..2595657) 1 NC_008782.1 PFAM: Negative transcriptional regulator; KEGG: bbr:BB2357 hypothetical protein; negative transcriptional regulator 2595657 4671530 Ajs_2440 Acidovorax sp. JS42 negative transcriptional regulator YP_986677.1 2594959 R 232721 CDS YP_986678.1 121594782 4671398 complement(2595829..2596410) 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: rme:Rmet_3608 transcriptional regulator, TetR family; TetR family transcriptional regulator 2596410 4671398 Ajs_2441 Acidovorax sp. JS42 TetR family transcriptional regulator YP_986678.1 2595829 R 232721 CDS YP_986679.1 121594783 4670997 2596517..2597845 1 NC_008782.1 PFAM: beta-ketoacyl synthase; KEGG: pae:PA1373 3-oxoacyl-acyl carrier protein synthase II; beta-ketoacyl synthase 2597845 4670997 Ajs_2442 Acidovorax sp. JS42 beta-ketoacyl synthase YP_986679.1 2596517 D 232721 CDS YP_986680.1 121594784 4670981 2597939..2599534 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 2599534 4670981 Ajs_2443 Acidovorax sp. JS42 integrase catalytic subunit YP_986680.1 2597939 D 232721 CDS YP_986681.1 121594785 4670946 2599531..2600295 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 2600295 4670946 Ajs_2444 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_986681.1 2599531 D 232721 CDS YP_986682.1 121594786 4670892 complement(2600249..2600689) 1 NC_008782.1 hypothetical protein 2600689 4670892 Ajs_2445 Acidovorax sp. JS42 hypothetical protein YP_986682.1 2600249 R 232721 CDS YP_986683.1 121594787 4670805 complement(2600829..2601488) 1 NC_008782.1 hypothetical protein 2601488 4670805 Ajs_2446 Acidovorax sp. JS42 hypothetical protein YP_986683.1 2600829 R 232721 CDS YP_986684.1 121594788 4670778 complement(2601481..2602572) 1 NC_008782.1 KEGG: dar:Daro_1658 hypothetical protein; hypothetical protein 2602572 4670778 Ajs_2447 Acidovorax sp. JS42 hypothetical protein YP_986684.1 2601481 R 232721 CDS YP_986685.1 121594789 4670743 complement(2602657..2603685) 1 NC_008782.1 KEGG: ppu:PP_2495 hypothetical protein; hypothetical protein 2603685 4670743 Ajs_2448 Acidovorax sp. JS42 hypothetical protein YP_986685.1 2602657 R 232721 CDS YP_986686.1 121594790 4670721 complement(2603815..2604804) 1 NC_008782.1 KEGG: ppu:PP_2496 hypothetical protein; hypothetical protein 2604804 4670721 Ajs_2449 Acidovorax sp. JS42 hypothetical protein YP_986686.1 2603815 R 232721 CDS YP_986687.1 121594791 4670653 complement(2604823..2605200) 1 NC_008782.1 KEGG: dar:Daro_1655 hypothetical protein; hypothetical protein 2605200 4670653 Ajs_2450 Acidovorax sp. JS42 hypothetical protein YP_986687.1 2604823 R 232721 CDS YP_986688.1 121594792 4670630 2605665..2606975 1 NC_008782.1 KEGG: rpd:RPD_2285 hypothetical protein; hypothetical protein 2606975 4670630 Ajs_2451 Acidovorax sp. JS42 hypothetical protein YP_986688.1 2605665 D 232721 CDS YP_986689.1 121594793 4670614 complement(2607034..2608137) 1 NC_008782.1 KEGG: psb:Psyr_4511 hypothetical protein; hypothetical protein 2608137 4670614 Ajs_2452 Acidovorax sp. JS42 hypothetical protein YP_986689.1 2607034 R 232721 CDS YP_986690.1 121594794 4671324 complement(2608143..2609372) 1 NC_008782.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bpa:BPP0485 plasmid-related protein; helix-turn-helix domain-containing protein 2609372 4671324 Ajs_2453 Acidovorax sp. JS42 helix-turn-helix domain-containing protein YP_986690.1 2608143 R 232721 CDS YP_986691.1 121594795 4670687 complement(2609369..2609674) 1 NC_008782.1 hypothetical protein 2609674 4670687 Ajs_2454 Acidovorax sp. JS42 hypothetical protein YP_986691.1 2609369 R 232721 CDS YP_986692.1 121594796 4670801 complement(2609863..2611377) 1 NC_008782.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 2611377 4670801 Ajs_2455 Acidovorax sp. JS42 transposase IS66 YP_986692.1 2609863 R 232721 CDS YP_986693.1 121594797 4670839 complement(2611458..2611769) 1 NC_008782.1 PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein 2611769 4670839 Ajs_2456 Acidovorax sp. JS42 IS66 Orf2 family protein YP_986693.1 2611458 R 232721 CDS YP_986694.1 121594798 4670937 complement(2611790..2612242) 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein 2612242 4670937 Ajs_2457 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_986694.1 2611790 R 232721 CDS YP_986695.1 121594799 4671014 complement(2612889..2614649) 1 NC_008782.1 PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase; UvrD/REP helicase 2614649 4671014 Ajs_2458 Acidovorax sp. JS42 UvrD/REP helicase YP_986695.1 2612889 R 232721 CDS YP_986696.1 121594800 4671165 complement(2614646..2616466) 1 NC_008782.1 KEGG: eba:ebA6581 hypothetical protein; hypothetical protein 2616466 4671165 Ajs_2459 Acidovorax sp. JS42 hypothetical protein YP_986696.1 2614646 R 232721 CDS YP_986697.1 121594801 4671279 complement(2616693..2617934) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: rfr:Rfer_2830 phage integrase; phage integrase family protein 2617934 4671279 Ajs_2460 Acidovorax sp. JS42 phage integrase family protein YP_986697.1 2616693 R 232721 CDS YP_986698.1 121594802 4671874 complement(2618531..2619208) 1 NC_008782.1 KEGG: rfr:Rfer_2829 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 2619208 4671874 Ajs_2461 Acidovorax sp. JS42 phosphoglycolate phosphatase YP_986698.1 2618531 R 232721 CDS YP_986699.1 121594803 4671603 complement(2619205..2619918) 1 NC_008782.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2619918 4671603 Ajs_2462 Acidovorax sp. JS42 3-demethylubiquinone-9 3-methyltransferase YP_986699.1 2619205 R 232721 CDS YP_986700.1 121594804 4671726 complement(2619998..2620654) 1 NC_008782.1 PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB; OmpA/MotB domain-containing protein 2620654 4671726 Ajs_2463 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_986700.1 2619998 R 232721 CDS YP_986701.1 121594805 4671773 2620848..2623514 1 NC_008782.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2623514 4671773 Ajs_2464 Acidovorax sp. JS42 DNA gyrase subunit A YP_986701.1 2620848 D 232721 CDS YP_986702.1 121594806 4671503 2623578..2624693 1 NC_008782.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2624693 4671503 Ajs_2465 Acidovorax sp. JS42 phosphoserine aminotransferase YP_986702.1 2623578 D 232721 CDS YP_986703.1 121594807 4671929 2624810..2625925 1 NC_008782.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase; chorismate mutase / prephenate dehydratase 2625925 4671929 Ajs_2466 Acidovorax sp. JS42 chorismate mutase / prephenate dehydratase YP_986703.1 2624810 D 232721 CDS YP_986704.1 121594808 4672051 2625935..2626819 1 NC_008782.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase; prephenate dehydrogenase 2626819 4672051 Ajs_2467 Acidovorax sp. JS42 prephenate dehydrogenase YP_986704.1 2625935 D 232721 CDS YP_986705.1 121594809 4672080 2626819..2628840 1 NC_008782.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 2628840 4672080 Ajs_2468 Acidovorax sp. JS42 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase YP_986705.1 2626819 D 232721 CDS YP_986706.1 121594810 4672101 2629014..2630699 1 NC_008782.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2630699 rpsA 4672101 rpsA Acidovorax sp. JS42 30S ribosomal protein S1 YP_986706.1 2629014 D 232721 CDS YP_986707.1 121594811 4672161 2630821..2631132 1 NC_008782.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit; integration host factor subunit beta 2631132 4672161 Ajs_2470 Acidovorax sp. JS42 integration host factor subunit beta YP_986707.1 2630821 D 232721 CDS YP_986708.1 121594812 4672218 2631262..2631594 1 NC_008782.1 KEGG: rfr:Rfer_1564 hypothetical protein; hypothetical protein 2631594 4672218 Ajs_2471 Acidovorax sp. JS42 hypothetical protein YP_986708.1 2631262 D 232721 CDS YP_986709.1 121594813 4672234 2631584..2632741 1 NC_008782.1 PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_1563 putative transmembrane protein; hypothetical protein 2632741 4672234 Ajs_2472 Acidovorax sp. JS42 hypothetical protein YP_986709.1 2631584 D 232721 CDS YP_986710.1 121594814 4672304 2632750..2633094 1 NC_008782.1 KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein 2633094 4672304 Ajs_2473 Acidovorax sp. JS42 hypothetical protein YP_986710.1 2632750 D 232721 CDS YP_986711.1 121594815 4672026 2633206..2636160 1 NC_008782.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 2636160 4672026 Ajs_2474 Acidovorax sp. JS42 putative monovalent cation/H+ antiporter subunit A YP_986711.1 2633206 D 232721 CDS YP_986712.1 121594816 4672034 2636160..2636525 1 NC_008782.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2636525 4672034 Ajs_2475 Acidovorax sp. JS42 putative monovalent cation/H+ antiporter subunit C YP_986712.1 2636160 D 232721 CDS YP_986713.1 121594817 4672418 2636522..2638258 1 NC_008782.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2638258 4672418 Ajs_2476 Acidovorax sp. JS42 putative monovalent cation/H+ antiporter subunit D YP_986713.1 2636522 D 232721 CDS YP_986714.1 121594818 4672455 2638255..2638746 1 NC_008782.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 2638746 4672455 Ajs_2477 Acidovorax sp. JS42 putative monovalent cation/H+ antiporter subunit E YP_986714.1 2638255 D 232721 CDS YP_986715.1 121594819 4672487 2638743..2639024 1 NC_008782.1 PFAM: multiple resistance and pH regulation protein F; KEGG: psp:PSPPH_3176 potassium efflux system protein PhaF; multiple resistance and pH regulation protein F 2639024 4672487 Ajs_2478 Acidovorax sp. JS42 multiple resistance and pH regulation protein F YP_986715.1 2638743 D 232721 CDS YP_986716.1 121594820 4673208 2639021..2639389 1 NC_008782.1 PFAM: Na+/H+ antiporter subunit; KEGG: pen:PSEEN3538 multicomponent potassium-proton antiporter, subunit G (PhaG); Na+/H+ antiporter subunit 2639389 4673208 Ajs_2479 Acidovorax sp. JS42 Na+/H+ antiporter subunit YP_986716.1 2639021 D 232721 CDS YP_986717.1 121594821 4672802 complement(2639460..2643212) 1 NC_008782.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase 2643212 4672802 Ajs_2480 Acidovorax sp. JS42 5-oxoprolinase YP_986717.1 2639460 R 232721 CDS YP_986718.1 121594822 4672876 2643299..2645122 1 NC_008782.1 KEGG: bpa:BPP4392 hypothetical protein; hypothetical protein 2645122 4672876 Ajs_2481 Acidovorax sp. JS42 hypothetical protein YP_986718.1 2643299 D 232721 CDS YP_986719.1 121594823 4672894 complement(2645168..2645746) 1 NC_008782.1 KEGG: rme:Rmet_1871 putative transcriptional regulator; putative transcriptional regulator 2645746 4672894 Ajs_2482 Acidovorax sp. JS42 putative transcriptional regulator YP_986719.1 2645168 R 232721 CDS YP_986720.1 121594824 4673087 2645950..2646927 1 NC_008782.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1774 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 2646927 4673087 Ajs_2483 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_986720.1 2645950 D 232721 CDS YP_986721.1 121594825 4673144 2646965..2647474 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1773 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ 2647474 4673144 Ajs_2484 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_986721.1 2646965 D 232721 CDS YP_986722.1 121594826 4673139 2647490..2648794 1 NC_008782.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1772 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 2648794 4673139 Ajs_2485 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_986722.1 2647490 D 232721 CDS YP_986723.1 121594827 4674008 2648837..2649232 1 NC_008782.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2649232 4674008 Ajs_2486 Acidovorax sp. JS42 camphor resistance protein CrcB YP_986723.1 2648837 D 232721 CDS YP_986724.1 121594828 4674026 2649364..2650227 1 NC_008782.1 PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730; hypothetical protein 2650227 4674026 Ajs_2487 Acidovorax sp. JS42 hypothetical protein YP_986724.1 2649364 D 232721 CDS YP_986725.1 121594829 4673145 complement(2650282..2651469) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2651469 4673145 Ajs_2488 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986725.1 2650282 R 232721 CDS YP_986726.1 121594830 4673453 complement(2651471..2653171) 1 NC_008782.1 PFAM: protein of unknown function DUF195; KEGG: bur:Bcep18194_A4217 protein of unknown function DUF195; hypothetical protein 2653171 4673453 Ajs_2489 Acidovorax sp. JS42 hypothetical protein YP_986726.1 2651471 R 232721 CDS YP_986727.1 121594831 4673500 complement(2653235..2654215) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2654215 4673500 Ajs_2490 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_986727.1 2653235 R 232721 CDS YP_986728.1 121594832 4673591 complement(2654295..2655710) 1 NC_008782.1 KEGG: pol:Bpro_3079 putative transmembrane protein; hypothetical protein 2655710 4673591 Ajs_2491 Acidovorax sp. JS42 hypothetical protein YP_986728.1 2654295 R 232721 CDS YP_986729.1 121594833 4673616 complement(2655775..2656971) 1 NC_008782.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2656971 4673616 Ajs_2492 Acidovorax sp. JS42 nicotinate phosphoribosyltransferase YP_986729.1 2655775 R 232721 CDS YP_986730.1 121594834 4673676 complement(2657151..2657639) 1 NC_008782.1 PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2141 thioesterase superfamily; thioesterase superfamily protein 2657639 4673676 Ajs_2493 Acidovorax sp. JS42 thioesterase superfamily protein YP_986730.1 2657151 R 232721 CDS YP_986731.1 121594835 4673715 2657909..2658472 1 NC_008782.1 TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin; phasin family protein 2658472 4673715 Ajs_2494 Acidovorax sp. JS42 phasin family protein YP_986731.1 2657909 D 232721 CDS YP_986732.1 121594836 4673828 2660419..2661309 1 NC_008782.1 PFAM: peptidase M23B; KEGG: bpa:BPP1182 putative peptidase; peptidase M23B 2661309 4673828 Ajs_2496 Acidovorax sp. JS42 peptidase M23B YP_986732.1 2660419 D 232721 CDS YP_986733.1 121594837 4673994 2661306..2661956 1 NC_008782.1 PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase E 2661956 4673994 Ajs_2497 Acidovorax sp. JS42 ribosomal large subunit pseudouridine synthase E YP_986733.1 2661306 D 232721 CDS YP_986734.1 121594838 4673982 2662059..2663099 1 NC_008782.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO1969 hypothetical protein; Sel1 domain-containing protein 2663099 4673982 Ajs_2498 Acidovorax sp. JS42 Sel1 domain-containing protein YP_986734.1 2662059 D 232721 CDS YP_986735.1 121594839 4673895 complement(2663161..2663835) 1 NC_008782.1 hypothetical protein 2663835 4673895 Ajs_2499 Acidovorax sp. JS42 hypothetical protein YP_986735.1 2663161 R 232721 CDS YP_986736.1 121594840 4674094 complement(2663924..2664826) 1 NC_008782.1 TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein 2664826 4674094 Ajs_2500 Acidovorax sp. JS42 transporter DMT superfamily protein YP_986736.1 2663924 R 232721 CDS YP_986737.1 121594841 4674047 2665191..2665808 1 NC_008782.1 PFAM: nuclease (SNase domain protein); KEGG: mca:MCA2942 prophage MuMc02, nuclease, putative; nuclease 2665808 4674047 Ajs_2501 Acidovorax sp. JS42 nuclease YP_986737.1 2665191 D 232721 CDS YP_986738.1 121594842 4674496 complement(2665849..2666796) 1 NC_008782.1 PFAM: phosphoesterase, DHHA1; KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1; phosphoesterase, DHHA1 2666796 4674496 Ajs_2502 Acidovorax sp. JS42 phosphoesterase, DHHA1 YP_986738.1 2665849 R 232721 CDS YP_986739.1 121594843 4674658 2666935..2667204 1 NC_008782.1 hypothetical protein 2667204 4674658 Ajs_2503 Acidovorax sp. JS42 hypothetical protein YP_986739.1 2666935 D 232721 CDS YP_986740.1 121594844 4674636 2667313..2667600 1 NC_008782.1 hypothetical protein 2667600 4674636 Ajs_2504 Acidovorax sp. JS42 hypothetical protein YP_986740.1 2667313 D 232721 CDS YP_986741.1 121594845 4674614 2667597..2668403 1 NC_008782.1 PFAM: pseudouridine synthase; KEGG: gsu:GSU3160 RNA pseudouridine synthase family protein; tRNA pseudouridine synthase C 2668403 4674614 Ajs_2505 Acidovorax sp. JS42 tRNA pseudouridine synthase C YP_986741.1 2667597 D 232721 CDS YP_986742.1 121594846 4674568 2668628..2669197 1 NC_008782.1 PFAM: MgtC/SapB transporter; KEGG: pfl:PFL_2871 transporter, MgtC family; MgtC/SapB transporter 2669197 4674568 Ajs_2506 Acidovorax sp. JS42 MgtC/SapB transporter YP_986742.1 2668628 D 232721 CDS YP_986743.1 121594847 4674530 2669252..2669461 1 NC_008782.1 KEGG: pol:Bpro_3354 hypothetical protein; hypothetical protein 2669461 4674530 Ajs_2507 Acidovorax sp. JS42 hypothetical protein YP_986743.1 2669252 D 232721 CDS YP_986744.1 121594848 4674484 2669620..2671614 1 NC_008782.1 KEGG: pen:PSEEN2301 hypothetical protein; hypothetical protein 2671614 4674484 Ajs_2508 Acidovorax sp. JS42 hypothetical protein YP_986744.1 2669620 D 232721 CDS YP_986745.1 121594849 4674451 2671700..2672173 1 NC_008782.1 PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein; OsmC family protein 2672173 4674451 Ajs_2509 Acidovorax sp. JS42 OsmC family protein YP_986745.1 2671700 D 232721 CDS YP_986746.1 121594850 4674447 complement(2672217..2673176) 1 NC_008782.1 PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding; GTP-binding protein, HSR1-like 2673176 4674447 Ajs_2510 Acidovorax sp. JS42 GTP-binding protein, HSR1-like YP_986746.1 2672217 R 232721 CDS YP_986747.1 121594851 4674365 2673233..2673454 1 NC_008782.1 KEGG: pol:Bpro_3397 hypothetical protein; hypothetical protein 2673454 4674365 Ajs_2511 Acidovorax sp. JS42 hypothetical protein YP_986747.1 2673233 D 232721 CDS YP_986748.1 121594852 4674277 2673470..2673679 1 NC_008782.1 KEGG: pol:Bpro_3398 hypothetical protein; hypothetical protein 2673679 4674277 Ajs_2512 Acidovorax sp. JS42 hypothetical protein YP_986748.1 2673470 D 232721 CDS YP_986749.1 121594853 4674264 complement(2673752..2675512) 1 NC_008782.1 KEGG: mag:amb1833 Oxyanion-translocating ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase subunit ArsA 2675512 4674264 Ajs_2513 Acidovorax sp. JS42 arsenite-activated ATPase subunit ArsA YP_986749.1 2673752 R 232721 CDS YP_986750.1 121594854 4674217 2675566..2675949 1 NC_008782.1 SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein; ArsR family transcriptional regulator 2675949 4674217 Ajs_2514 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_986750.1 2675566 D 232721 CDS YP_986751.1 121594855 4674154 2675972..2676457 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A1137 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2676457 4674154 Ajs_2515 Acidovorax sp. JS42 glyoxalase/bleomycin resistance protein/dioxygenase YP_986751.1 2675972 D 232721 CDS YP_986752.1 121594856 4674172 2676475..2676972 1 NC_008782.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase; protein tyrosine phosphatase 2676972 4674172 Ajs_2516 Acidovorax sp. JS42 protein tyrosine phosphatase YP_986752.1 2676475 D 232721 CDS YP_986753.1 121594857 4673694 2676974..2678056 1 NC_008782.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_0700 bile acid:sodium symporter; arsenical-resistance protein 2678056 4673694 Ajs_2517 Acidovorax sp. JS42 arsenical-resistance protein YP_986753.1 2676974 D 232721 CDS YP_986754.1 121594858 4673633 2678046..2679239 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP1682 hypothetical protein; major facilitator superfamily transporter 2679239 4673633 Ajs_2518 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986754.1 2678046 D 232721 CDS YP_986755.1 121594859 4673290 complement(2679286..2680203) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0879 transcriptional regulator, LysR family; LysR family transcriptional regulator 2680203 4673290 Ajs_2519 Acidovorax sp. JS42 LysR family transcriptional regulator YP_986755.1 2679286 R 232721 CDS YP_986756.1 121594860 4673585 2680417..2682114 1 NC_008782.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein 2682114 4673585 Ajs_2520 Acidovorax sp. JS42 thiamine pyrophosphate protein YP_986756.1 2680417 D 232721 CDS YP_986757.1 121594861 4673272 complement(2682284..2683816) 1 NC_008782.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional; glutamate-cysteine ligase 2683816 4673272 Ajs_2521 Acidovorax sp. JS42 glutamate-cysteine ligase YP_986757.1 2682284 R 232721 CDS YP_986758.1 121594862 4673268 complement(2683989..2684900) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_C7556 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2684900 4673268 Ajs_2522 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_986758.1 2683989 R 232721 CDS YP_986759.1 121594863 4673244 complement(2685104..2687617) 1 NC_008782.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 2687617 ligD 4673244 ligD Acidovorax sp. JS42 ATP-dependent DNA ligase YP_986759.1 2685104 R 232721 CDS YP_986760.1 121594864 4673243 complement(2687648..2688691) 1 NC_008782.1 PFAM: Ku domain protein; KEGG: nmu:Nmul_A1176 Ku; Ku domain-containing protein 2688691 4673243 Ajs_2524 Acidovorax sp. JS42 Ku domain-containing protein YP_986760.1 2687648 R 232721 CDS YP_986761.1 121594865 4673393 complement(2689273..2689470) 1 NC_008782.1 KEGG: net:Neut_2266 conserved hypothetical protein; hypothetical protein 2689470 4673393 Ajs_2525 Acidovorax sp. JS42 hypothetical protein YP_986761.1 2689273 R 232721 CDS YP_986762.1 121594866 4673227 complement(2689533..2690708) 1 NC_008782.1 PFAM: AAA-4 family protein; KEGG: xcv:XCV2169 ATP-dependent DNA helicase; putative transcriptional regulator 2690708 4673227 Ajs_2526 Acidovorax sp. JS42 putative transcriptional regulator YP_986762.1 2689533 R 232721 CDS YP_986763.1 121594867 4673364 complement(2690690..2693359) 1 NC_008782.1 KEGG: xcv:XCV2168 hypothetical protein; hypothetical protein 2693359 4673364 Ajs_2527 Acidovorax sp. JS42 hypothetical protein YP_986763.1 2690690 R 232721 CDS YP_986764.1 121594868 4673344 complement(2693356..2694567) 1 NC_008782.1 KEGG: xcv:XCV2167 hypothetical protein; hypothetical protein 2694567 4673344 Ajs_2528 Acidovorax sp. JS42 hypothetical protein YP_986764.1 2693356 R 232721 CDS YP_986765.1 121594869 4672730 complement(2694560..2696614) 1 NC_008782.1 KEGG: xcv:XCV2166 hypothetical protein; hypothetical protein 2696614 4672730 Ajs_2529 Acidovorax sp. JS42 hypothetical protein YP_986765.1 2694560 R 232721 CDS YP_986766.1 121594870 4672728 complement(2696611..2699397) 1 NC_008782.1 KEGG: xcv:XCV2165 putative DNA methylase; putative DNA methylase 2699397 4672728 Ajs_2530 Acidovorax sp. JS42 putative DNA methylase YP_986766.1 2696611 R 232721 CDS YP_986767.1 121594871 4672915 complement(2699456..2699656) 1 NC_008782.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: pau:PA14_15570 hypothetical protein; phage transcriptional regulator AlpA 2699656 4672915 Ajs_2531 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_986767.1 2699456 R 232721 CDS YP_986768.1 121594872 4672686 complement(2700955..2701185) 1 NC_008782.1 KEGG: xcv:XCV2162 hypothetical protein; hypothetical protein 2701185 4672686 Ajs_2534 Acidovorax sp. JS42 hypothetical protein YP_986768.1 2700955 R 232721 CDS YP_986769.1 121594873 4672673 complement(2701248..2701526) 1 NC_008782.1 hypothetical protein 2701526 4672673 Ajs_2535 Acidovorax sp. JS42 hypothetical protein YP_986769.1 2701248 R 232721 CDS YP_986770.1 121594874 4672668 complement(2701523..2703121) 1 NC_008782.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pau:PA14_15540 putative mating pair formation protein TrbL; TrbL/VirB6 plasmid conjugal transfer protein 2703121 4672668 Ajs_2536 Acidovorax sp. JS42 TrbL/VirB6 plasmid conjugal transfer protein YP_986770.1 2701523 R 232721 CDS YP_986771.1 121594875 4672581 complement(2703118..2703387) 1 NC_008782.1 KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK; putative entry/exclusion protein TrbK 2703387 4672581 Ajs_2537 Acidovorax sp. JS42 putative entry/exclusion protein TrbK YP_986771.1 2703118 R 232721 CDS YP_986772.1 121594876 4672338 complement(2703403..2704188) 1 NC_008782.1 KEGG: pau:PA14_15520 mating pair formation protein TrbJ; conjugal transfer protein TrbJ 2704188 4672338 Ajs_2538 Acidovorax sp. JS42 conjugal transfer protein TrbJ YP_986772.1 2703403 R 232721 CDS YP_986773.1 121594877 4672018 complement(2704430..2704801) 1 NC_008782.1 KEGG: pau:PA14_15510 OriT-binding protein, TraJ; conjugal transfer relaxosome component TraJ 2704801 4672018 Ajs_2539 Acidovorax sp. JS42 conjugal transfer relaxosome component TraJ YP_986773.1 2704430 R 232721 CDS YP_986774.1 121594878 4672240 complement(2705121..2705399) 1 NC_008782.1 KEGG: pau:PA14_15500 possible OriT-binding protein, TraK; putative OriT-binding protein, TraK 2705399 4672240 Ajs_2540 Acidovorax sp. JS42 putative OriT-binding protein, TraK YP_986774.1 2705121 R 232721 CDS YP_986775.1 121594879 4672146 complement(2706113..2706982) 1 NC_008782.1 PFAM: replication C family protein; KEGG: pau:PA14_15400 putative replication protein, RepC; plasmid and phage iteron-binding protein 2706982 4672146 Ajs_2541 Acidovorax sp. JS42 plasmid and phage iteron-binding protein YP_986775.1 2706113 R 232721 CDS YP_986776.1 121594880 4671970 complement(2706972..2707850) 1 NC_008782.1 KEGG: xcv:XCV2481 replication protein A; replication protein A 2707850 4671970 Ajs_2542 Acidovorax sp. JS42 replication protein A YP_986776.1 2706972 R 232721 CDS YP_986777.1 121594881 4672108 complement(2707854..2708108) 1 NC_008782.1 KEGG: abo:ABO_2067 hypothetical protein; hypothetical protein 2708108 4672108 Ajs_2543 Acidovorax sp. JS42 hypothetical protein YP_986777.1 2707854 R 232721 CDS YP_986778.1 121594882 4671500 2708170..2709159 1 NC_008782.1 KEGG: pau:PA14_15360 hypothetical protein; hypothetical protein 2709159 4671500 Ajs_2544 Acidovorax sp. JS42 hypothetical protein YP_986778.1 2708170 D 232721 CDS YP_986779.1 121594883 4671494 2709239..2709484 1 NC_008782.1 PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2483 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA 2709484 4671494 Ajs_2545 Acidovorax sp. JS42 phage transcriptional regulator AlpA YP_986779.1 2709239 D 232721 CDS YP_986780.1 121594884 4671703 complement(2709576..2710778) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: xcv:XCV2484 phage-related integrase; phage integrase family protein 2710778 4671703 Ajs_2546 Acidovorax sp. JS42 phage integrase family protein YP_986780.1 2709576 R 232721 CDS YP_986781.1 121594885 4671463 complement(2711086..2712702) 1 NC_008782.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2712702 guaA 4671463 guaA Acidovorax sp. JS42 GMP synthase YP_986781.1 2711086 R 232721 CDS YP_986782.1 121594886 4671629 complement(2712780..2714255) 1 NC_008782.1 KEGG: rfr:Rfer_2288 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD; inosine-5'-monophosphate dehydrogenase 2714255 4671629 Ajs_2548 Acidovorax sp. JS42 inosine-5'-monophosphate dehydrogenase YP_986782.1 2712780 R 232721 CDS YP_986783.1 121594887 4671410 2714256..2714858 1 NC_008782.1 KEGG: pol:Bpro_2439 hypothetical protein; hypothetical protein 2714858 4671410 Ajs_2549 Acidovorax sp. JS42 hypothetical protein YP_986783.1 2714256 D 232721 CDS YP_986784.1 121594888 4671403 complement(2714944..2715288) 1 NC_008782.1 PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125; hypothetical protein 2715288 4671403 Ajs_2550 Acidovorax sp. JS42 hypothetical protein YP_986784.1 2714944 R 232721 CDS YP_986785.1 121594889 4671326 complement(2715281..2715721) 1 NC_008782.1 PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase; cyclase/dehydrase 2715721 4671326 Ajs_2551 Acidovorax sp. JS42 cyclase/dehydrase YP_986785.1 2715281 R 232721 CDS YP_986786.1 121594890 4671518 2715836..2716309 1 NC_008782.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2716309 smpB 4671518 smpB Acidovorax sp. JS42 SsrA-binding protein YP_986786.1 2715836 D 232721 CDS YP_986787.1 121594891 4671003 2716408..2716773 1 NC_008782.1 PFAM: Secreted repeat of unknown function; KEGG: rfr:Rfer_2547 secreted repeat of unknown function; hypothetical protein 2716773 4671003 Ajs_2553 Acidovorax sp. JS42 hypothetical protein YP_986787.1 2716408 D 232721 CDS YP_986788.1 121594892 4670971 2716790..2717305 1 NC_008782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_2548 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2717305 4670971 Ajs_2554 Acidovorax sp. JS42 ECF subfamily RNA polymerase sigma-24 factor YP_986788.1 2716790 D 232721 CDS YP_986789.1 121594893 4670536 2717336..2718175 1 NC_008782.1 KEGG: rfr:Rfer_2549 putative transmembrane transcriptional regulator; putative transmembrane anti-sigma factor 2718175 4670536 Ajs_2555 Acidovorax sp. JS42 putative transmembrane anti-sigma factor YP_986789.1 2717336 D 232721 CDS YP_986790.1 121594894 4670910 complement(2718126..2719217) 1 NC_008782.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase 2719217 4670910 Ajs_2556 Acidovorax sp. JS42 3-hydroxyisobutyryl-CoA hydrolase YP_986790.1 2718126 R 232721 CDS YP_986791.1 121594895 4670886 complement(2719214..2720098) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_2138 protein of unknown function DUF6, transmembrane; hypothetical protein 2720098 4670886 Ajs_2557 Acidovorax sp. JS42 hypothetical protein YP_986791.1 2719214 R 232721 CDS YP_986792.1 121594896 4670851 complement(2720307..2722136) 1 NC_008782.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pol:Bpro_2429 GTP-binding protein TypA; GTP-binding protein TypA 2722136 4670851 Ajs_2558 Acidovorax sp. JS42 GTP-binding protein TypA YP_986792.1 2720307 R 232721 CDS YP_986793.1 121594897 4670518 complement(2722133..2723134) 1 NC_008782.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2723134 truB 4670518 truB Acidovorax sp. JS42 tRNA pseudouridine synthase B YP_986793.1 2722133 R 232721 CDS YP_986794.1 121594898 4670515 complement(2723131..2723508) 1 NC_008782.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2723508 rbfA 4670515 rbfA Acidovorax sp. JS42 ribosome-binding factor A YP_986794.1 2723131 R 232721 CDS YP_986795.1 121594899 4670701 complement(2723521..2726352) 1 NC_008782.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2726352 infB 4670701 infB Acidovorax sp. JS42 translation initiation factor IF-2 YP_986795.1 2723521 R 232721 CDS YP_986796.1 121594900 4670647 complement(2726377..2727861) 1 NC_008782.1 KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor 2727861 4670647 Ajs_2562 Acidovorax sp. JS42 NusA antitermination factor YP_986796.1 2726377 R 232721 CDS YP_986797.1 121594901 4674687 complement(2727931..2728590) 1 NC_008782.1 PFAM: protein of unknown function DUF150; KEGG: rfr:Rfer_2132 protein of unknown function DUF150; hypothetical protein 2728590 4674687 Ajs_2563 Acidovorax sp. JS42 hypothetical protein YP_986797.1 2727931 R 232721 CDS YP_986798.1 121594902 4674086 complement(2728717..2729106) 1 NC_008782.1 KEGG: pol:Bpro_1834 hypothetical protein; hypothetical protein 2729106 4674086 Ajs_2564 Acidovorax sp. JS42 hypothetical protein YP_986798.1 2728717 R 232721 CDS YP_986799.1 121594903 4671244 complement(2729117..2730391) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c 2730391 4671244 Ajs_2565 Acidovorax sp. JS42 class I cytochrome c YP_986799.1 2729117 R 232721 CDS YP_986800.1 121594904 4670685 complement(2730388..2731074) 1 NC_008782.1 KEGG: bbr:BB4510 probable cytochrome c; putative cytochrome c 2731074 4670685 Ajs_2566 Acidovorax sp. JS42 putative cytochrome c YP_986800.1 2730388 R 232721 CDS YP_986801.1 121594905 4670756 complement(2731118..2731873) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1977 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2731873 4670756 Ajs_2567 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_986801.1 2731118 R 232721 CDS YP_986802.1 121594906 4670866 complement(2731915..2734209) 1 NC_008782.1 KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R 2734209 4670866 Ajs_2568 Acidovorax sp. JS42 ribonuclease R YP_986802.1 2731915 R 232721 CDS YP_986803.1 121594907 4671097 2734697..2735071 1 NC_008782.1 hypothetical protein 2735071 4671097 Ajs_2569 Acidovorax sp. JS42 hypothetical protein YP_986803.1 2734697 D 232721 CDS YP_986804.1 121594908 4671156 complement(2735129..2735911) 1 NC_008782.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2735911 4671156 Ajs_2570 Acidovorax sp. JS42 tRNA/rRNA methyltransferase SpoU YP_986804.1 2735129 R 232721 CDS YP_986805.1 121594909 4671871 complement(2735942..2736571) 1 NC_008782.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2736571 rnhB 4671871 rnhB Acidovorax sp. JS42 ribonuclease HII YP_986805.1 2735942 R 232721 CDS YP_986806.1 121594910 4671301 complement(2736546..2737703) 1 NC_008782.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 2737703 lpxB 4671301 lpxB Acidovorax sp. JS42 lipid-A-disaccharide synthase YP_986806.1 2736546 R 232721 CDS YP_986807.1 121594911 4671616 complement(2737719..2738510) 1 NC_008782.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2738510 4671616 Ajs_2573 Acidovorax sp. JS42 UDP-N-acetylglucosamine acyltransferase YP_986807.1 2737719 R 232721 CDS YP_986808.1 121594912 4671782 complement(2738528..2738968) 1 NC_008782.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2738968 fabZ 4671782 fabZ Acidovorax sp. JS42 (3R)-hydroxymyristoyl-ACP dehydratase YP_986808.1 2738528 R 232721 CDS YP_986809.1 121594913 4671797 complement(2738984..2739964) 1 NC_008782.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2739964 lpxD 4671797 lpxD Acidovorax sp. JS42 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_986809.1 2738984 R 232721 CDS YP_986810.1 121594914 4671834 complement(2739989..2740510) 1 NC_008782.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2740510 4671834 Ajs_2576 Acidovorax sp. JS42 outer membrane chaperone Skp YP_986810.1 2739989 R 232721 CDS YP_986811.1 121594915 4674350 complement(2740510..2742807) 1 NC_008782.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15); surface antigen (D15) 2742807 4674350 Ajs_2577 Acidovorax sp. JS42 surface antigen (D15) YP_986811.1 2740510 R 232721 CDS YP_986812.1 121594916 4674250 complement(2742853..2744217) 1 NC_008782.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase; peptidase RseP 2744217 4674250 Ajs_2578 Acidovorax sp. JS42 peptidase RseP YP_986812.1 2742853 R 232721 CDS YP_986813.1 121594917 4674085 complement(2744337..2745509) 1 NC_008782.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2745509 4674085 Ajs_2579 Acidovorax sp. JS42 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_986813.1 2744337 R 232721 CDS YP_986814.1 121594918 4672273 complement(2745506..2746360) 1 NC_008782.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2746360 4672273 Ajs_2580 Acidovorax sp. JS42 phosphatidate cytidylyltransferase YP_986814.1 2745506 R 232721 CDS YP_986815.1 121594919 4672325 complement(2746395..2747129) 1 NC_008782.1 KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 2747129 4672325 Ajs_2581 Acidovorax sp. JS42 undecaprenyl diphosphate synthase YP_986815.1 2746395 R 232721 CDS YP_986816.1 121594920 4672463 complement(2747158..2747718) 1 NC_008782.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2747718 frr 4672463 frr Acidovorax sp. JS42 ribosome recycling factor YP_986816.1 2747158 R 232721 CDS YP_986817.1 121594921 4674304 complement(2747767..2748489) 1 NC_008782.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2748489 pyrH 4674304 pyrH Acidovorax sp. JS42 uridylate kinase YP_986817.1 2747767 R 232721 CDS YP_986818.1 121594922 4674423 complement(2748547..2749443) 1 NC_008782.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2749443 tsf 4674423 tsf Acidovorax sp. JS42 elongation factor Ts YP_986818.1 2748547 R 232721 CDS YP_986819.1 121594923 4672918 complement(2749553..2750305) 1 NC_008782.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2750305 rpsB 4672918 rpsB Acidovorax sp. JS42 30S ribosomal protein S2 YP_986819.1 2749553 R 232721 CDS YP_986820.1 121594924 4672960 2750506..2751852 1 NC_008782.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2751852 4672960 Ajs_2586 Acidovorax sp. JS42 amidase YP_986820.1 2750506 D 232721 CDS YP_986821.1 121594925 4672982 2751904..2753151 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 2753151 4672982 Ajs_2587 Acidovorax sp. JS42 D-amino-acid dehydrogenase YP_986821.1 2751904 D 232721 CDS YP_986822.1 121594926 4672995 2753452..2754978 1 NC_008782.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: rfr:Rfer_1984 protein of unknown function UPF0031; carbohydrate kinase 2754978 4672995 Ajs_2588 Acidovorax sp. JS42 carbohydrate kinase YP_986822.1 2753452 D 232721 CDS YP_986823.1 121594927 4672996 2755155..2755328 1 NC_008782.1 hypothetical protein 2755328 4672996 Ajs_2589 Acidovorax sp. JS42 hypothetical protein YP_986823.1 2755155 D 232721 CDS YP_986824.1 121594928 4673019 complement(2755395..2756075) 1 NC_008782.1 KEGG: pol:Bpro_2657 hypothetical protein; hypothetical protein 2756075 4673019 Ajs_2590 Acidovorax sp. JS42 hypothetical protein YP_986824.1 2755395 R 232721 CDS YP_986825.1 121594929 4673039 complement(2756072..2757082) 1 NC_008782.1 PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component; hypothetical protein 2757082 4673039 Ajs_2591 Acidovorax sp. JS42 hypothetical protein YP_986825.1 2756072 R 232721 CDS YP_986826.1 121594930 4673049 complement(2757098..2757907) 1 NC_008782.1 KEGG: pol:Bpro_2659 ABC-type transport system ipermease component; ABC-type transport system permease 2757907 4673049 Ajs_2592 Acidovorax sp. JS42 ABC-type transport system permease YP_986826.1 2757098 R 232721 CDS YP_986827.1 121594931 4673071 complement(2758017..2758475) 1 NC_008782.1 PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family; MerR family transcriptional regulator 2758475 4673071 Ajs_2593 Acidovorax sp. JS42 MerR family transcriptional regulator YP_986827.1 2758017 R 232721 CDS YP_986828.1 121594932 4673085 2758516..2760537 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2760537 4673085 Ajs_2594 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_986828.1 2758516 D 232721 CDS YP_986829.1 121594933 4674700 2760534..2760953 1 NC_008782.1 KEGG: sal:Sala_2445 hypothetical protein; hypothetical protein 2760953 4674700 Ajs_2595 Acidovorax sp. JS42 hypothetical protein YP_986829.1 2760534 D 232721 CDS YP_986830.1 121594934 4674403 2761101..2761727 1 NC_008782.1 PFAM: protein of unknown function DUF161; KEGG: sme:SMc02240 hypothetical protein; hypothetical protein 2761727 4674403 Ajs_2596 Acidovorax sp. JS42 hypothetical protein YP_986830.1 2761101 D 232721 CDS YP_986831.1 121594935 4673474 2761803..2762204 1 NC_008782.1 KEGG: pol:Bpro_3482 hypothetical protein; hypothetical protein 2762204 4673474 Ajs_2597 Acidovorax sp. JS42 hypothetical protein YP_986831.1 2761803 D 232721 CDS YP_986832.1 121594936 4673598 2762308..2762655 1 NC_008782.1 hypothetical protein 2762655 4673598 Ajs_2598 Acidovorax sp. JS42 hypothetical protein YP_986832.1 2762308 D 232721 CDS YP_986833.1 121594937 4673764 2762652..2764085 1 NC_008782.1 KEGG: bpm:BURPS1710b_A2008 copper tolerance protein; copper tolerance protein 2764085 4673764 Ajs_2599 Acidovorax sp. JS42 copper tolerance protein YP_986833.1 2762652 D 232721 CDS YP_986834.1 121594938 4673770 2764087..2765475 1 NC_008782.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 2765475 4673770 Ajs_2600 Acidovorax sp. JS42 multicopper oxidase, type 3 YP_986834.1 2764087 D 232721 CDS YP_986835.1 121594939 4673776 2765493..2765975 1 NC_008782.1 PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase; blue (type1) copper domain-containing protein 2765975 4673776 Ajs_2601 Acidovorax sp. JS42 blue (type1) copper domain-containing protein YP_986835.1 2765493 D 232721 CDS YP_986836.1 121594940 4673801 2766010..2766504 1 NC_008782.1 PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411; hypothetical protein 2766504 4673801 Ajs_2602 Acidovorax sp. JS42 hypothetical protein YP_986836.1 2766010 D 232721 CDS YP_986837.1 121594941 4673906 2766501..2766911 1 NC_008782.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 2766911 4673906 Ajs_2603 Acidovorax sp. JS42 hypothetical protein YP_986837.1 2766501 D 232721 CDS YP_986838.1 121594942 4673967 2766967..2769174 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2769174 4673967 Ajs_2604 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_986838.1 2766967 D 232721 CDS YP_986839.1 121594943 4673972 2769230..2770243 1 NC_008782.1 PFAM: peptidase S58, DmpA; KEGG: bmb:BruAb2_0832 hypothetical protein; peptidase S58, DmpA 2770243 4673972 Ajs_2605 Acidovorax sp. JS42 peptidase S58, DmpA YP_986839.1 2769230 D 232721 CDS YP_986840.1 121594944 4673973 2770246..2771583 1 NC_008782.1 KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 2771583 4673973 Ajs_2606 Acidovorax sp. JS42 TRAP transporter solute receptor TAXI family protein YP_986840.1 2770246 D 232721 CDS YP_986841.1 121594945 4673893 complement(2771613..2773838) 1 NC_008782.1 KEGG: rfr:Rfer_2170 hypothetical protein; hypothetical protein 2773838 4673893 Ajs_2607 Acidovorax sp. JS42 hypothetical protein YP_986841.1 2771613 R 232721 CDS YP_986842.1 121594946 4674139 complement(2773896..2775635) 1 NC_008782.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 2775635 4674139 Ajs_2608 Acidovorax sp. JS42 putative ABC transporter ATP-binding protein YP_986842.1 2773896 R 232721 CDS YP_986843.1 121594947 4674151 2775814..2777547 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_2169 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 2777547 4674151 Ajs_2609 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_986843.1 2775814 D 232721 CDS YP_986844.1 121594948 4674145 2777684..2779504 1 NC_008782.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2779504 4674145 Ajs_2610 Acidovorax sp. JS42 peptidase M14, carboxypeptidase A YP_986844.1 2777684 D 232721 CDS YP_986845.1 121594949 4674126 complement(2779968..2780519) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bpm:BURPS1710b_A1950 integrase core domain protein; integrase catalytic subunit 2780519 4674126 Ajs_2611 Acidovorax sp. JS42 integrase catalytic subunit YP_986845.1 2779968 R 232721 CDS YP_986846.1 121594950 4670588 complement(2781490..2782569) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 2782569 4670588 Ajs_2613 Acidovorax sp. JS42 integrase catalytic subunit YP_986846.1 2781490 R 232721 CDS YP_986847.1 121594951 4674084 complement(2784111..2784569) 1 NC_008782.1 KEGG: eba:ebD99 hypothetical protein; hypothetical protein 2784569 4674084 Ajs_2614 Acidovorax sp. JS42 hypothetical protein YP_986847.1 2784111 R 232721 CDS YP_986848.1 121594952 4674053 complement(2784562..2785149) 1 NC_008782.1 PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebA5860 predicted ArsR subfamily of helix-turn-helix bacterial transcription regulatory protein; DNA polymerase subunit beta 2785149 4674053 Ajs_2615 Acidovorax sp. JS42 DNA polymerase subunit beta YP_986848.1 2784562 R 232721 CDS YP_986849.1 121594953 4674022 complement(2785296..2786774) 1 NC_008782.1 PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: shm:Shewmr7_2863 N-6 DNA methylase; N-6 DNA methylase 2786774 4674022 Ajs_2616 Acidovorax sp. JS42 N-6 DNA methylase YP_986849.1 2785296 R 232721 CDS YP_986850.1 121594954 4674010 complement(2786847..2787404) 1 NC_008782.1 hypothetical protein 2787404 4674010 Ajs_2617 Acidovorax sp. JS42 hypothetical protein YP_986850.1 2786847 R 232721 CDS YP_986851.1 121594955 4674049 complement(2787465..2789918) 1 NC_008782.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like; EcoEI R domain-containing protein 2789918 4674049 Ajs_2618 Acidovorax sp. JS42 EcoEI R domain-containing protein YP_986851.1 2787465 R 232721 CDS YP_986852.1 121594956 4674042 2790069..2790593 1 NC_008782.1 hypothetical protein 2790593 4674042 Ajs_2619 Acidovorax sp. JS42 hypothetical protein YP_986852.1 2790069 D 232721 CDS YP_986853.1 121594957 4674711 complement(2791280..2793202) 1 NC_008782.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2793202 4674711 Ajs_2620 Acidovorax sp. JS42 PpiC-type peptidyl-prolyl cis-trans isomerase YP_986853.1 2791280 R 232721 CDS YP_986854.1 121594958 4674696 complement(2793352..2793624) 1 NC_008782.1 PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein; histone family protein DNA-binding protein 2793624 4674696 Ajs_2621 Acidovorax sp. JS42 histone family protein DNA-binding protein YP_986854.1 2793352 R 232721 CDS YP_986855.1 121594959 4674690 complement(2794031..2794615) 1 NC_008782.1 KEGG: rfr:Rfer_2245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2794615 4674690 Ajs_2622 Acidovorax sp. JS42 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_986855.1 2794031 R 232721 CDS YP_986856.1 121594960 4674686 complement(2794646..2796619) 1 NC_008782.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2796619 uvrC 4674686 uvrC Acidovorax sp. JS42 excinuclease ABC subunit C YP_986856.1 2794646 R 232721 CDS YP_986857.1 121594961 4674701 complement(2796720..2797421) 1 NC_008782.1 KEGG: pol:Bpro_2033 hypothetical protein; hypothetical protein 2797421 4674701 Ajs_2624 Acidovorax sp. JS42 hypothetical protein YP_986857.1 2796720 R 232721 CDS YP_986858.1 121594962 4674688 2797589..2798791 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase; phage integrase family protein 2798791 4674688 Ajs_2625 Acidovorax sp. JS42 phage integrase family protein YP_986858.1 2797589 D 232721 CDS YP_986859.1 121594963 4674681 2798931..2799314 1 NC_008782.1 PFAM: protein of unknown function DUF1044; KEGG: rru:Rru_A0922 protein of unknown function DUF1044; hypothetical protein 2799314 4674681 Ajs_2626 Acidovorax sp. JS42 hypothetical protein YP_986859.1 2798931 D 232721 CDS YP_986860.1 121594964 4674664 2799298..2799600 1 NC_008782.1 KEGG: pen:PSEEN2902 transcriptional regulator; transcriptional regulator 2799600 4674664 Ajs_2627 Acidovorax sp. JS42 transcriptional regulator YP_986860.1 2799298 D 232721 CDS YP_986861.1 121594965 4674672 2799689..2800156 1 NC_008782.1 KEGG: shm:Shewmr7_1033 hypothetical protein; hypothetical protein 2800156 4674672 Ajs_2628 Acidovorax sp. JS42 hypothetical protein YP_986861.1 2799689 D 232721 CDS YP_986862.1 121594966 4674667 2800156..2800782 1 NC_008782.1 KEGG: rfr:Rfer_1064 hypothetical protein; hypothetical protein 2800782 4674667 Ajs_2629 Acidovorax sp. JS42 hypothetical protein YP_986862.1 2800156 D 232721 CDS YP_986863.1 121594967 4674654 2800786..2801922 1 NC_008782.1 KEGG: shm:Shewmr7_1035 hypothetical protein; hypothetical protein 2801922 4674654 Ajs_2630 Acidovorax sp. JS42 hypothetical protein YP_986863.1 2800786 D 232721 CDS YP_986864.1 121594968 4674659 2801919..2802581 1 NC_008782.1 KEGG: shm:Shewmr7_1036 hypothetical protein; hypothetical protein 2802581 4674659 Ajs_2631 Acidovorax sp. JS42 hypothetical protein YP_986864.1 2801919 D 232721 CDS YP_986865.1 121594969 4674646 complement(2802598..2803083) 1 NC_008782.1 KEGG: neu:NE2099 hypothetical protein; hypothetical protein 2803083 4674646 Ajs_2632 Acidovorax sp. JS42 hypothetical protein YP_986865.1 2802598 R 232721 CDS YP_986866.1 121594970 4674637 2803140..2803388 1 NC_008782.1 hypothetical protein 2803388 4674637 Ajs_2633 Acidovorax sp. JS42 hypothetical protein YP_986866.1 2803140 D 232721 CDS YP_986867.1 121594971 4674617 complement(2803716..2804858) 1 NC_008782.1 KEGG: pca:Pcar_2916 hypothetical protein; hypothetical protein 2804858 4674617 Ajs_2635 Acidovorax sp. JS42 hypothetical protein YP_986867.1 2803716 R 232721 CDS YP_986868.1 121594972 4674137 2805271..2805777 1 NC_008782.1 PFAM: DNA repair protein RadC; KEGG: pau:PA14_31260 RadC-like protein; DNA repair protein RadC 2805777 4674137 Ajs_2636 Acidovorax sp. JS42 DNA repair protein RadC YP_986868.1 2805271 D 232721 CDS YP_986869.1 121594973 4674619 complement(2805845..2808148) 1 NC_008782.1 KEGG: rso:RSc2619 hypothetical protein; hypothetical protein 2808148 4674619 Ajs_2637 Acidovorax sp. JS42 hypothetical protein YP_986869.1 2805845 R 232721 CDS YP_986870.1 121594974 4674618 complement(2808132..2808416) 1 NC_008782.1 hypothetical protein 2808416 4674618 Ajs_2638 Acidovorax sp. JS42 hypothetical protein YP_986870.1 2808132 R 232721 CDS YP_986871.1 121594975 4674598 2808702..2809526 1 NC_008782.1 PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1244 protein of unknown function DUF932; hypothetical protein 2809526 4674598 Ajs_2639 Acidovorax sp. JS42 hypothetical protein YP_986871.1 2808702 D 232721 CDS YP_986872.1 121594976 4674609 2809605..2811677 1 NC_008782.1 PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1245 ParB-like nuclease; ParB family protein 2811677 4674609 Ajs_2640 Acidovorax sp. JS42 ParB family protein YP_986872.1 2809605 D 232721 CDS YP_986873.1 121594977 4674582 2813197..2813550 1 NC_008782.1 PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_1248 protein of unknown function DUF736; hypothetical protein 2813550 4674582 Ajs_2644 Acidovorax sp. JS42 hypothetical protein YP_986873.1 2813197 D 232721 CDS YP_986874.1 121594978 4674566 complement(2813614..2813901) 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1249 transcriptional regulator, XRE family; XRE family transcriptional regulator 2813901 4674566 Ajs_2645 Acidovorax sp. JS42 XRE family transcriptional regulator YP_986874.1 2813614 R 232721 CDS YP_986875.1 121594979 4674536 complement(2814071..2815564) 1 NC_008782.1 KEGG: mes:Meso_4392 hypothetical protein; hypothetical protein 2815564 4674536 Ajs_2646 Acidovorax sp. JS42 hypothetical protein YP_986875.1 2814071 R 232721 CDS YP_986876.1 121594980 4674543 complement(2815561..2816457) 1 NC_008782.1 PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 2816457 4674543 Ajs_2647 Acidovorax sp. JS42 TniB family protein YP_986876.1 2815561 R 232721 CDS YP_986877.1 121594981 4674548 complement(2816454..2818124) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 2818124 4674548 Ajs_2648 Acidovorax sp. JS42 integrase catalytic subunit YP_986877.1 2816454 R 232721 CDS YP_986878.1 121594982 4674153 complement(2818121..2818738) 1 NC_008782.1 KEGG: mag:amb3764 hypothetical protein; hypothetical protein 2818738 4674153 Ajs_2649 Acidovorax sp. JS42 hypothetical protein YP_986878.1 2818121 R 232721 CDS YP_986879.1 121594983 4674538 2819034..2819384 1 NC_008782.1 KEGG: rme:Rmet_1250 putative lipoprotein; putative lipoprotein 2819384 4674538 Ajs_2650 Acidovorax sp. JS42 putative lipoprotein YP_986879.1 2819034 D 232721 CDS YP_986880.1 121594984 4674534 2819693..2820454 1 NC_008782.1 KEGG: rme:Rmet_1252 hypothetical protein; hypothetical protein 2820454 4674534 Ajs_2651 Acidovorax sp. JS42 hypothetical protein YP_986880.1 2819693 D 232721 CDS YP_986881.1 121594985 4674520 2820538..2820819 1 NC_008782.1 KEGG: rme:Rmet_1253 hypothetical protein; hypothetical protein 2820819 4674520 Ajs_2652 Acidovorax sp. JS42 hypothetical protein YP_986881.1 2820538 D 232721 CDS YP_986882.1 121594986 4674526 2820846..2821703 1 NC_008782.1 KEGG: rme:Rmet_1485 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 2821703 4674526 Ajs_2653 Acidovorax sp. JS42 putative replication initiator and transcription repressor protein YP_986882.1 2820846 D 232721 CDS YP_986883.1 121594987 4674492 2821957..2822595 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc2605 putative partition protein; cobyrinic acid a,c-diamide synthase 2822595 4674492 Ajs_2655 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_986883.1 2821957 D 232721 CDS YP_986884.1 121594988 4674491 2822592..2822879 1 NC_008782.1 KEGG: rme:Rmet_1256 hypothetical protein; hypothetical protein 2822879 4674491 Ajs_2656 Acidovorax sp. JS42 hypothetical protein YP_986884.1 2822592 D 232721 CDS YP_986885.1 121594989 4674495 2822876..2823433 1 NC_008782.1 KEGG: bam:Bamb_1987 hypothetical protein; hypothetical protein 2823433 4674495 Ajs_2657 Acidovorax sp. JS42 hypothetical protein YP_986885.1 2822876 D 232721 CDS YP_986886.1 121594990 4674490 2823430..2824029 1 NC_008782.1 KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein 2824029 4674490 Ajs_2658 Acidovorax sp. JS42 putative conjugal transfer TRAF transmembrane protein YP_986886.1 2823430 D 232721 CDS YP_986887.1 121594991 4674483 complement(2824828..2825799) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region; integrase catalytic subunit 2825799 4674483 Ajs_2660 Acidovorax sp. JS42 integrase catalytic subunit YP_986887.1 2824828 R 232721 CDS YP_986888.1 121594992 4674470 complement(2827602..2827952) 1 NC_008782.1 hypothetical protein 2827952 4674470 Ajs_2662 Acidovorax sp. JS42 hypothetical protein YP_986888.1 2827602 R 232721 CDS YP_986889.1 121594993 4674458 2828319..2829545 1 NC_008782.1 PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 2829545 4674458 Ajs_2663 Acidovorax sp. JS42 transposase, mutator type YP_986889.1 2828319 D 232721 CDS YP_986890.1 121594994 4674416 complement(2830473..2830814) 1 NC_008782.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 2830814 4674416 Ajs_2667 Acidovorax sp. JS42 hypothetical protein YP_986890.1 2830473 R 232721 CDS YP_986891.1 121594995 4674433 complement(2830894..2831385) 1 NC_008782.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein 2831385 4674433 Ajs_2668 Acidovorax sp. JS42 blue (type1) copper domain-containing protein YP_986891.1 2830894 R 232721 CDS YP_986892.1 121594996 4674390 complement(2831419..2832750) 1 NC_008782.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 2832750 4674390 Ajs_2669 Acidovorax sp. JS42 multicopper oxidase, type 3 YP_986892.1 2831419 R 232721 CDS YP_986893.1 121594997 4674397 complement(2832848..2834278) 1 NC_008782.1 KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-like lipoprotein 2834278 4674397 Ajs_2670 Acidovorax sp. JS42 putative copper resistance-like lipoprotein YP_986893.1 2832848 R 232721 CDS YP_986894.1 121594998 4674378 complement(2834275..2834616) 1 NC_008782.1 KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein 2834616 4674378 Ajs_2671 Acidovorax sp. JS42 hypothetical protein YP_986894.1 2834275 R 232721 CDS YP_986895.1 121594999 4674363 2835350..2835658 1 NC_008782.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE 2835658 4674363 Ajs_2673 Acidovorax sp. JS42 flagellar hook-basal body complex subunit FliE YP_986895.1 2835350 D 232721 CDS YP_986896.1 121595000 4674007 2835954..2837099 1 NC_008782.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: nwi:Nwi_1948 acetate kinase; acetate kinase 2837099 4674007 Ajs_2674 Acidovorax sp. JS42 acetate kinase YP_986896.1 2835954 D 232721 CDS YP_986897.1 121595001 4674190 2837313..2837765 1 NC_008782.1 PFAM: regulatory protein, MerR; KEGG: csa:Csal_3005 transcriptional regulator, MerR family; MerR family transcriptional regulator 2837765 4674190 Ajs_2675 Acidovorax sp. JS42 MerR family transcriptional regulator YP_986897.1 2837313 D 232721 CDS YP_986898.1 121595002 4674331 2837816..2839273 1 NC_008782.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2187 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2839273 4674331 Ajs_2676 Acidovorax sp. JS42 cyclopropane-fatty-acyl-phospholipid synthase YP_986898.1 2837816 D 232721 CDS YP_986899.1 121595003 4674334 2839432..2839911 1 NC_008782.1 KEGG: mmc:Mmcs_1460 hypothetical protein; hypothetical protein 2839911 4674334 Ajs_2677 Acidovorax sp. JS42 hypothetical protein YP_986899.1 2839432 D 232721 CDS YP_986900.1 121595004 4670679 2840018..2842438 1 NC_008782.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 2842438 4670679 Ajs_2678 Acidovorax sp. JS42 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_986900.1 2840018 D 232721 CDS YP_986901.1 121595005 4670763 2842544..2843806 1 NC_008782.1 KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein 2843806 4670763 Ajs_2679 Acidovorax sp. JS42 hypothetical protein YP_986901.1 2842544 D 232721 CDS YP_986902.1 121595006 4670838 complement(2843872..2844915) 1 NC_008782.1 catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; glyceraldehyde-3-phosphate dehydrogenase 2844915 4670838 Ajs_2680 Acidovorax sp. JS42 glyceraldehyde-3-phosphate dehydrogenase YP_986902.1 2843872 R 232721 CDS YP_986903.1 121595007 4670863 complement(2844943..2846562) 1 NC_008782.1 PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal; 2-octaprenylphenol hydroxylase 2846562 4670863 Ajs_2681 Acidovorax sp. JS42 2-octaprenylphenol hydroxylase YP_986903.1 2844943 R 232721 CDS YP_986904.1 121595008 4670994 complement(2846562..2847581) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2847581 4670994 Ajs_2682 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_986904.1 2846562 R 232721 CDS YP_986905.1 121595009 4671005 complement(2847578..2848240) 1 NC_008782.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sal:Sala_2559 methyltransferase type 11; type 11 methyltransferase 2848240 4671005 Ajs_2683 Acidovorax sp. JS42 type 11 methyltransferase YP_986905.1 2847578 R 232721 CDS YP_986906.1 121595010 4671037 complement(2848570..2849658) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 2849658 4671037 Ajs_2685 Acidovorax sp. JS42 transposase, IS4 family protein YP_986906.1 2848570 R 232721 CDS YP_986907.1 121595011 4671122 complement(2849730..2850206) 1 NC_008782.1 KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein 2850206 4671122 Ajs_2686 Acidovorax sp. JS42 hypothetical protein YP_986907.1 2849730 R 232721 CDS YP_986908.1 121595012 4671147 complement(2850244..2850888) 1 NC_008782.1 hypothetical protein 2850888 4671147 Ajs_2687 Acidovorax sp. JS42 hypothetical protein YP_986908.1 2850244 R 232721 CDS YP_986909.1 121595013 4671158 complement(2850895..2852070) 1 NC_008782.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tbd:Tbd_1834 putative protease; peptidase S1 and S6, chymotrypsin/Hap 2852070 4671158 Ajs_2688 Acidovorax sp. JS42 peptidase S1 and S6, chymotrypsin/Hap YP_986909.1 2850895 R 232721 CDS YP_986910.1 121595014 4671175 complement(2852067..2852966) 1 NC_008782.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase 2852966 4671175 Ajs_2689 Acidovorax sp. JS42 phosphoribosylpyrophosphate synthetase YP_986910.1 2852067 R 232721 CDS YP_986911.1 121595015 4671304 complement(2852963..2854504) 1 NC_008782.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase 2854504 4671304 Ajs_2690 Acidovorax sp. JS42 thymidine phosphorylase YP_986911.1 2852963 R 232721 CDS YP_986912.1 121595016 4671289 complement(2854501..2855859) 1 NC_008782.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein 2855859 4671289 Ajs_2691 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_986912.1 2854501 R 232721 CDS YP_986913.1 121595017 4671882 complement(2855885..2856382) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477; hypothetical protein 2856382 4671882 Ajs_2692 Acidovorax sp. JS42 hypothetical protein YP_986913.1 2855885 R 232721 CDS YP_986914.1 121595018 4671523 complement(2856384..2857289) 1 NC_008782.1 PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3401 protein of unknown function DUF477; hypothetical protein 2857289 4671523 Ajs_2693 Acidovorax sp. JS42 hypothetical protein YP_986914.1 2856384 R 232721 CDS YP_986915.1 121595019 4671573 complement(2857291..2857902) 1 NC_008782.1 PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA; LemA family protein 2857902 4671573 Ajs_2694 Acidovorax sp. JS42 LemA family protein YP_986915.1 2857291 R 232721 CDS YP_986916.1 121595020 4671589 complement(2857899..2859212) 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2859212 4671589 Ajs_2695 Acidovorax sp. JS42 major facilitator superfamily transporter YP_986916.1 2857899 R 232721 CDS YP_986917.1 121595021 4671605 complement(2859232..2861610) 1 NC_008782.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase 2861610 4671605 Ajs_2696 Acidovorax sp. JS42 copper-translocating P-type ATPase YP_986917.1 2859232 R 232721 CDS YP_986918.1 121595022 4671698 complement(2861713..2862576) 1 NC_008782.1 PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein 2862576 4671698 Ajs_2697 Acidovorax sp. JS42 hypothetical protein YP_986918.1 2861713 R 232721 CDS YP_986919.1 121595023 4671725 complement(2862937..2863371) 1 NC_008782.1 hypothetical protein 2863371 4671725 Ajs_2698 Acidovorax sp. JS42 hypothetical protein YP_986919.1 2862937 R 232721 CDS YP_986920.1 121595024 4671740 2863441..2863956 1 NC_008782.1 PFAM: regulatory protein, MerR; KEGG: sme:SMa0281 putative regulator, MerR family; MerR family transcriptional regulator 2863956 4671740 Ajs_2699 Acidovorax sp. JS42 MerR family transcriptional regulator YP_986920.1 2863441 D 232721 CDS YP_986921.1 121595025 4671762 2864249..2864599 1 NC_008782.1 hypothetical protein 2864599 4671762 Ajs_2700 Acidovorax sp. JS42 hypothetical protein YP_986921.1 2864249 D 232721 CDS YP_986922.1 121595026 4671765 complement(2864807..2865202) 1 NC_008782.1 hypothetical protein 2865202 4671765 Ajs_2701 Acidovorax sp. JS42 hypothetical protein YP_986922.1 2864807 R 232721 CDS YP_986923.1 121595027 4671777 complement(2865240..2866991) 1 NC_008782.1 KEGG: eba:ebA6677 hypothetical protein; hypothetical protein 2866991 4671777 Ajs_2702 Acidovorax sp. JS42 hypothetical protein YP_986923.1 2865240 R 232721 CDS YP_986924.1 121595028 4671791 complement(2866988..2870167) 1 NC_008782.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 2870167 4671791 Ajs_2703 Acidovorax sp. JS42 CzcA family heavy metal efflux protein YP_986924.1 2866988 R 232721 CDS YP_986925.1 121595029 4671806 complement(2870183..2871799) 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD; RND family efflux transporter MFP subunit 2871799 4671806 Ajs_2704 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_986925.1 2870183 R 232721 CDS YP_986926.1 121595030 4672061 complement(2871796..2873070) 1 NC_008782.1 PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein; outer membrane efflux protein 2873070 4672061 Ajs_2705 Acidovorax sp. JS42 outer membrane efflux protein YP_986926.1 2871796 R 232721 CDS YP_986927.1 121595031 4672082 complement(2873067..2873315) 1 NC_008782.1 KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein 2873315 4672082 Ajs_2706 Acidovorax sp. JS42 hypothetical protein YP_986927.1 2873067 R 232721 CDS YP_986928.1 121595032 4671965 complement(2873372..2874652) 1 NC_008782.1 KEGG: pol:Bpro_1182 membrane protein-like; membrane protein 2874652 4671965 Ajs_2707 Acidovorax sp. JS42 membrane protein YP_986928.1 2873372 R 232721 CDS YP_986929.1 121595033 4671968 complement(2875120..2875425) 1 NC_008782.1 KEGG: eba:ebA3243 transposase, IS5 family; hypothetical protein 2875425 4671968 Ajs_2708 Acidovorax sp. JS42 hypothetical protein YP_986929.1 2875120 R 232721 CDS YP_986930.1 121595034 4672136 complement(2875549..2877468) 1 NC_008782.1 KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein 2877468 4672136 Ajs_2709 Acidovorax sp. JS42 hypothetical protein YP_986930.1 2875549 R 232721 CDS YP_986931.1 121595035 4672235 complement(2877489..2879996) 1 NC_008782.1 KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 2879996 4672235 Ajs_2710 Acidovorax sp. JS42 heavy metal translocating P-type ATPase YP_986931.1 2877489 R 232721 CDS YP_986932.1 121595036 4672264 complement(2880006..2880266) 1 NC_008782.1 KEGG: ana:asl7591 hypothetical protein; hypothetical protein 2880266 4672264 Ajs_2711 Acidovorax sp. JS42 hypothetical protein YP_986932.1 2880006 R 232721 CDS YP_986933.1 121595037 4672271 complement(2880695..2881363) 1 NC_008782.1 KEGG: rfr:Rfer_0419 hypothetical protein; hypothetical protein 2881363 4672271 Ajs_2713 Acidovorax sp. JS42 hypothetical protein YP_986933.1 2880695 R 232721 CDS YP_986934.1 121595038 4672302 complement(2881360..2881635) 1 NC_008782.1 KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein 2881635 4672302 Ajs_2714 Acidovorax sp. JS42 hypothetical protein YP_986934.1 2881360 R 232721 CDS YP_986935.1 121595039 4672309 complement(2881646..2882134) 1 NC_008782.1 KEGG: ppu:PP_5391 hypothetical protein; hypothetical protein 2882134 4672309 Ajs_2715 Acidovorax sp. JS42 hypothetical protein YP_986935.1 2881646 R 232721 CDS YP_986936.1 121595040 4672333 complement(2882730..2883017) 1 NC_008782.1 KEGG: dar:Daro_2282 hypothetical protein; hypothetical protein 2883017 4672333 Ajs_2717 Acidovorax sp. JS42 hypothetical protein YP_986936.1 2882730 R 232721 CDS YP_986937.1 121595041 4672348 complement(2883245..2884237) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSp1136 ISRSO18-transposase protein; transposase, IS4 family protein 2884237 4672348 Ajs_2718 Acidovorax sp. JS42 transposase, IS4 family protein YP_986937.1 2883245 R 232721 CDS YP_986938.1 121595042 4672375 2884430..2884744 1 NC_008782.1 hypothetical protein 2884744 4672375 Ajs_2719 Acidovorax sp. JS42 hypothetical protein YP_986938.1 2884430 D 232721 CDS YP_986939.1 121595043 4672394 complement(2884919..2885260) 1 NC_008782.1 KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 2885260 4672394 Ajs_2720 Acidovorax sp. JS42 hypothetical protein YP_986939.1 2884919 R 232721 CDS YP_986940.1 121595044 4672040 complement(2885394..2885894) 1 NC_008782.1 PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein 2885894 4672040 Ajs_2721 Acidovorax sp. JS42 blue (type1) copper domain-containing protein YP_986940.1 2885394 R 232721 CDS YP_986941.1 121595045 4672493 complement(2885928..2887340) 1 NC_008782.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 2887340 4672493 Ajs_2722 Acidovorax sp. JS42 multicopper oxidase, type 3 YP_986941.1 2885928 R 232721 CDS YP_986942.1 121595046 4674424 complement(2887357..2888787) 1 NC_008782.1 KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-like lipoprotein 2888787 4674424 Ajs_2723 Acidovorax sp. JS42 putative copper resistance-like lipoprotein YP_986942.1 2887357 R 232721 CDS YP_986943.1 121595047 4674407 complement(2888784..2889080) 1 NC_008782.1 KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein 2889080 4674407 Ajs_2724 Acidovorax sp. JS42 hypothetical protein YP_986943.1 2888784 R 232721 CDS YP_986944.1 121595048 4673111 2889275..2889958 1 NC_008782.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 2889958 4673111 Ajs_2725 Acidovorax sp. JS42 two component heavy metal response transcriptional regulator YP_986944.1 2889275 D 232721 CDS YP_986945.1 121595049 4672718 2889959..2891362 1 NC_008782.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 2891362 4672718 Ajs_2726 Acidovorax sp. JS42 heavy metal sensor signal transduction histidine kinase YP_986945.1 2889959 D 232721 CDS YP_986946.1 121595050 4673180 2891434..2891862 1 NC_008782.1 KEGG: bpe:BP0266 hypothetical protein; hypothetical protein 2891862 4673180 Ajs_2727 Acidovorax sp. JS42 hypothetical protein YP_986946.1 2891434 D 232721 CDS YP_986947.1 121595051 4673155 2892313..2892666 1 NC_008782.1 hypothetical protein 2892666 4673155 Ajs_2728 Acidovorax sp. JS42 hypothetical protein YP_986947.1 2892313 D 232721 CDS YP_986948.1 121595052 4672799 2893073..2893597 1 NC_008782.1 KEGG: spr:spr0717 transposase; hypothetical protein 2893597 4672799 Ajs_2730 Acidovorax sp. JS42 hypothetical protein YP_986948.1 2893073 D 232721 CDS YP_986949.1 121595053 4672831 2893620..2894138 1 NC_008782.1 KEGG: spn:SP0811 transposase family protein; transposase family protein 2894138 4672831 Ajs_2731 Acidovorax sp. JS42 transposase family protein YP_986949.1 2893620 D 232721 CDS YP_986950.1 121595054 4672853 2894631..2894987 1 NC_008782.1 KEGG: bms:BRA0376 hypothetical protein; hypothetical protein 2894987 4672853 Ajs_2733 Acidovorax sp. JS42 hypothetical protein YP_986950.1 2894631 D 232721 CDS YP_986951.1 121595055 4673089 complement(2895585..2896994) 1 NC_008782.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2896994 gltX 4673089 gltX Acidovorax sp. JS42 glutamyl-tRNA synthetase YP_986951.1 2895585 R 232721 CDS YP_986952.1 121595056 4674682 complement(2896991..2898205) 1 NC_008782.1 KEGG: pol:Bpro_1608 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase 2898205 4674682 Ajs_2735 Acidovorax sp. JS42 O-succinylhomoserine sulfhydrylase YP_986952.1 2896991 R 232721 CDS YP_986953.1 121595057 4670592 complement(2898336..2899844) 1 NC_008782.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2899844 4670592 Ajs_2736 Acidovorax sp. JS42 amidophosphoribosyltransferase YP_986953.1 2898336 R 232721 CDS YP_986954.1 121595058 4674027 complement(2899922..2900410) 1 NC_008782.1 PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein; colicin V production protein 2900410 4674027 Ajs_2737 Acidovorax sp. JS42 colicin V production protein YP_986954.1 2899922 R 232721 CDS YP_986955.1 121595059 4674032 complement(2900451..2901293) 1 NC_008782.1 PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related; sporulation domain-containing protein 2901293 4674032 Ajs_2738 Acidovorax sp. JS42 sporulation domain-containing protein YP_986955.1 2900451 R 232721 CDS YP_986956.1 121595060 4674036 complement(2901308..2902633) 1 NC_008782.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_2686 FolC bifunctional protein; FolC bifunctional protein 2902633 4674036 Ajs_2739 Acidovorax sp. JS42 FolC bifunctional protein YP_986956.1 2901308 R 232721 CDS YP_986957.1 121595061 4673853 2902681..2903067 1 NC_008782.1 PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein; arsenate reductase-like protein 2903067 4673853 Ajs_2740 Acidovorax sp. JS42 arsenate reductase-like protein YP_986957.1 2902681 D 232721 CDS YP_986958.1 121595062 4673962 2903180..2903860 1 NC_008782.1 PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen; 17 kDa surface antigen 2903860 4673962 Ajs_2741 Acidovorax sp. JS42 17 kDa surface antigen YP_986958.1 2903180 D 232721 CDS YP_986959.1 121595063 4673981 2904031..2904348 1 NC_008782.1 PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein; hypothetical protein 2904348 4673981 Ajs_2742 Acidovorax sp. JS42 hypothetical protein YP_986959.1 2904031 D 232721 CDS YP_986960.1 121595064 4673452 2904415..2905761 1 NC_008782.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2905761 4673452 Ajs_2743 Acidovorax sp. JS42 argininosuccinate synthase YP_986960.1 2904415 D 232721 CDS YP_986961.1 121595065 4673482 complement(2905852..2906571) 1 NC_008782.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rpa:RPA2810 possible ExsB protein; exsB protein 2906571 4673482 Ajs_2744 Acidovorax sp. JS42 exsB protein YP_986961.1 2905852 R 232721 CDS YP_986962.1 121595066 4673501 complement(2906568..2907236) 1 NC_008782.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: pau:PA14_00140 hypothetical protein; hypothetical protein 2907236 4673501 Ajs_2745 Acidovorax sp. JS42 hypothetical protein YP_986962.1 2906568 R 232721 CDS YP_986963.1 121595067 4673597 2907560..2908447 1 NC_008782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bps:BPSL1130 putative sigma factor; ECF subfamily RNA polymerase sigma-24 factor 2908447 4673597 Ajs_2746 Acidovorax sp. JS42 ECF subfamily RNA polymerase sigma-24 factor YP_986963.1 2907560 D 232721 CDS YP_986964.1 121595068 4673713 2908523..2908978 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ade:Adeh_3128 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 2908978 4673713 Ajs_2747 Acidovorax sp. JS42 alkylhydroperoxidase YP_986964.1 2908523 D 232721 CDS YP_986965.1 121595069 4673716 2909268..2910704 1 NC_008782.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: mag:amb4305 di- and tricarboxylate transporters; anion transporter 2910704 4673716 Ajs_2748 Acidovorax sp. JS42 anion transporter YP_986965.1 2909268 D 232721 CDS YP_986966.1 121595070 4673721 complement(2910810..2911886) 1 NC_008782.1 KEGG: rfr:Rfer_2691 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylmuramate dehydrogenase 2911886 4673721 Ajs_2749 Acidovorax sp. JS42 UDP-N-acetylmuramate dehydrogenase YP_986966.1 2910810 R 232721 CDS YP_986967.1 121595071 4673757 2911954..2912439 1 NC_008782.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 2912439 4673757 Ajs_2750 Acidovorax sp. JS42 putative nucleotide-binding protein YP_986967.1 2911954 D 232721 CDS YP_986968.1 121595072 4673785 2912456..2913100 1 NC_008782.1 KEGG: pol:Bpro_1595 hypothetical protein; hypothetical protein 2913100 4673785 Ajs_2751 Acidovorax sp. JS42 hypothetical protein YP_986968.1 2912456 D 232721 CDS YP_986969.1 121595073 4673312 2913123..2914124 1 NC_008782.1 KEGG: rfr:Rfer_2693 HD-GYP domain-like; putative metal dependent phosphohydrolase 2914124 4673312 Ajs_2752 Acidovorax sp. JS42 putative metal dependent phosphohydrolase YP_986969.1 2913123 D 232721 CDS YP_986970.1 121595074 4673800 complement(2914203..2914823) 1 NC_008782.1 PFAM: protein of unknown function DUF205; KEGG: rfr:Rfer_2695 protein of unknown function DUF205; acyl-phosphate glycerol-3-phosphate acyltransferase 2914823 4673800 Ajs_2753 Acidovorax sp. JS42 acyl-phosphate glycerol-3-phosphate acyltransferase YP_986970.1 2914203 R 232721 CDS YP_986971.1 121595075 4673804 complement(2914884..2915384) 1 NC_008782.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein; ybaK/ebsC protein 2915384 4673804 Ajs_2754 Acidovorax sp. JS42 ybaK/ebsC protein YP_986971.1 2914884 R 232721 CDS YP_986972.1 121595076 4673809 complement(2915450..2916511) 1 NC_008782.1 PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase; aldo/keto reductase 2916511 4673809 Ajs_2755 Acidovorax sp. JS42 aldo/keto reductase YP_986972.1 2915450 R 232721 CDS YP_986973.1 121595077 4673825 2916640..2917575 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2917575 4673825 Ajs_2756 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_986973.1 2916640 D 232721 CDS YP_986974.1 121595078 4673317 2917784..2918791 1 NC_008782.1 TIGRFAM: diaminopimelate dehydrogenase; KEGG: dsy:DSY0242 hypothetical protein; diaminopimelate dehydrogenase 2918791 4673317 Ajs_2757 Acidovorax sp. JS42 diaminopimelate dehydrogenase YP_986974.1 2917784 D 232721 CDS YP_986975.1 121595079 4673903 join(2918979..2919059,2919061..2920083) 1 NC_008782.1 peptide chain release factor 2 2920083 4673903 Ajs_2758 Acidovorax sp. JS42 peptide chain release factor 2 YP_986975.1 2918979 D 232721 CDS YP_986976.1 121595080 4674114 2920129..2922831 1 NC_008782.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase; aminopeptidase N 2922831 pepN 4674114 pepN Acidovorax sp. JS42 aminopeptidase N YP_986976.1 2920129 D 232721 CDS YP_986977.1 121595081 4674105 2922843..2923862 1 NC_008782.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2923862 4674105 Ajs_2760 Acidovorax sp. JS42 fructose-1,6-bisphosphatase YP_986977.1 2922843 D 232721 CDS YP_986978.1 121595082 4674071 2924184..2925164 1 NC_008782.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2925164 4674071 Ajs_2761 Acidovorax sp. JS42 DNA ligase YP_986978.1 2924184 D 232721 CDS YP_986979.1 121595083 4674064 complement(2925274..2927643) 1 NC_008782.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase; ornithine decarboxylase 2927643 4674064 Ajs_2762 Acidovorax sp. JS42 ornithine decarboxylase YP_986979.1 2925274 R 232721 CDS YP_986980.1 121595084 4674044 2927812..2928243 1 NC_008782.1 KEGG: pol:Bpro_2414 protein of unknown function DUF107; hypothetical protein 2928243 4674044 Ajs_2763 Acidovorax sp. JS42 hypothetical protein YP_986980.1 2927812 D 232721 CDS YP_986981.1 121595085 4673326 2928322..2929236 1 NC_008782.1 PFAM: band 7 protein; KEGG: rfr:Rfer_2124 band 7 protein; SPFH domain-containing protein 2929236 4673326 Ajs_2764 Acidovorax sp. JS42 SPFH domain-containing protein YP_986981.1 2928322 D 232721 CDS YP_986982.1 121595086 4674712 2929318..2929611 1 NC_008782.1 PFAM: ferredoxin; KEGG: rfr:Rfer_1389 ferredoxin; ferredoxin 2929611 4674712 Ajs_2765 Acidovorax sp. JS42 ferredoxin YP_986982.1 2929318 D 232721 CDS YP_986983.1 121595087 4674721 2929870..2930991 1 NC_008782.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2930991 4674721 Ajs_2766 Acidovorax sp. JS42 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_986983.1 2929870 D 232721 CDS YP_986984.1 121595088 4674703 2930995..2931459 1 NC_008782.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2931459 ribH 4674703 ribH Acidovorax sp. JS42 6,7-dimethyl-8-ribityllumazine synthase YP_986984.1 2930995 D 232721 CDS YP_986985.1 121595089 4674683 2931456..2931989 1 NC_008782.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rfr:Rfer_2670 NusB antitermination factor; NusB antitermination factor 2931989 4674683 Ajs_2768 Acidovorax sp. JS42 NusB antitermination factor YP_986985.1 2931456 D 232721 CDS YP_986986.1 121595090 4674680 2932083..2933267 1 NC_008782.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II; aminotransferase 2933267 4674680 Ajs_2769 Acidovorax sp. JS42 aminotransferase YP_986986.1 2932083 D 232721 CDS YP_986987.1 121595091 4674674 2933287..2933712 1 NC_008782.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 2933712 4674674 Ajs_2770 Acidovorax sp. JS42 4-hydroxybenzoyl-CoA thioesterase YP_986987.1 2933287 D 232721 CDS YP_986988.1 121595092 4674648 2933709..2934410 1 NC_008782.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2934410 4674648 Ajs_2771 Acidovorax sp. JS42 MotA/TolQ/ExbB proton channel YP_986988.1 2933709 D 232721 CDS YP_986989.1 121595093 4674630 2934590..2935015 1 NC_008782.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_2673 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2935015 4674630 Ajs_2772 Acidovorax sp. JS42 biopolymer transport protein ExbD/TolR YP_986989.1 2934590 D 232721 CDS YP_986990.1 121595094 4674627 2935037..2936008 1 NC_008782.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: rfr:Rfer_1159 TonB-like; TonB family protein 2936008 4674627 Ajs_2773 Acidovorax sp. JS42 TonB family protein YP_986990.1 2935037 D 232721 CDS YP_986991.1 121595095 4674626 complement(2936131..2937462) 1 NC_008782.1 PFAM: General substrate transporter; KEGG: bpe:BP2732 putative membrane transport protein; general substrate transporter 2937462 4674626 Ajs_2774 Acidovorax sp. JS42 general substrate transporter YP_986991.1 2936131 R 232721 CDS YP_986992.1 121595096 4674606 2937774..2938823 1 NC_008782.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: sme:SMb21487 putative cytochrome o ubiquinol oxidase chain II protein; ubiquinol oxidase subunit II 2938823 4674606 Ajs_2775 Acidovorax sp. JS42 ubiquinol oxidase subunit II YP_986992.1 2937774 D 232721 CDS YP_986993.1 121595097 4674616 2938951..2940891 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit I; KEGG: atc:AGR_C_227 ba-type ubiquinol oxidase chain I; cytochrome-c oxidase 2940891 4674616 Ajs_2776 Acidovorax sp. JS42 cytochrome-c oxidase YP_986993.1 2938951 D 232721 CDS YP_986994.1 121595098 4674604 2940884..2941519 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit III; KEGG: atc:AGR_C_225 bo-type ubiquinol oxidase chain III; cytochrome c oxidase subunit III 2941519 4674604 Ajs_2777 Acidovorax sp. JS42 cytochrome c oxidase subunit III YP_986994.1 2940884 D 232721 CDS YP_986995.1 121595099 4674587 2941520..2941948 1 NC_008782.1 PFAM: cytochrome C oxidase subunit IV; KEGG: reu:Reut_B4893 prokaryotic cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV 2941948 4674587 Ajs_2778 Acidovorax sp. JS42 cytochrome C oxidase subunit IV YP_986995.1 2941520 D 232721 CDS YP_986996.1 121595100 4674570 2941960..2942769 1 NC_008782.1 PFAM: Surfeit locus 1 family protein; KEGG: bpa:BPP1090 exported SurF1-family protein; Surfeit locus 1 family protein 2942769 4674570 Ajs_2779 Acidovorax sp. JS42 Surfeit locus 1 family protein YP_986996.1 2941960 D 232721 CDS YP_986997.1 121595101 4674574 2942766..2944106 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_2032 two-component, sensor histidine protein kinase, putative; integral membrane sensor signal transduction histidine kinase 2944106 4674574 Ajs_2780 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_986997.1 2942766 D 232721 CDS YP_986998.1 121595102 4674041 2944096..2944629 1 NC_008782.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: abo:ABO_2031 response regulator; two component Fis family transcriptional regulator 2944629 4674041 Ajs_2781 Acidovorax sp. JS42 two component Fis family transcriptional regulator YP_986998.1 2944096 D 232721 CDS YP_986999.1 121595103 4674547 2944741..2945169 1 NC_008782.1 KEGG: bja:blr1415 hypothetical glutathione S-transferase like protein; glutathione S-transferase-like protein 2945169 4674547 Ajs_2782 Acidovorax sp. JS42 glutathione S-transferase-like protein YP_986999.1 2944741 D 232721 CDS YP_987000.1 121595104 4674508 2945705..2947081 1 NC_008782.1 PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease; peptidase U32 2947081 4674508 Ajs_2783 Acidovorax sp. JS42 peptidase U32 YP_987000.1 2945705 D 232721 CDS YP_987001.1 121595105 4674487 2947137..2948114 1 NC_008782.1 KEGG: xac:XAC2490 hypothetical protein; hypothetical protein 2948114 4674487 Ajs_2784 Acidovorax sp. JS42 hypothetical protein YP_987001.1 2947137 D 232721 CDS YP_987002.1 121595106 4674474 complement(2948122..2948553) 1 NC_008782.1 KEGG: rpa:RPA3870 hypothetical protein; hypothetical protein 2948553 4674474 Ajs_2785 Acidovorax sp. JS42 hypothetical protein YP_987002.1 2948122 R 232721 CDS YP_987003.1 121595107 4674477 2948659..2949474 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_3594 transcriptional regulator, XRE family; XRE family transcriptional regulator 2949474 4674477 Ajs_2786 Acidovorax sp. JS42 XRE family transcriptional regulator YP_987003.1 2948659 D 232721 CDS YP_987004.1 121595108 4674450 complement(2949694..2952285) 1 NC_008782.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2952285 4674450 Ajs_2787 Acidovorax sp. JS42 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_987004.1 2949694 R 232721 CDS YP_987005.1 121595109 4674464 complement(2952400..2953020) 1 NC_008782.1 KEGG: pol:Bpro_3596 hypothetical protein; hypothetical protein 2953020 4674464 Ajs_2788 Acidovorax sp. JS42 hypothetical protein YP_987005.1 2952400 R 232721 CDS YP_987006.1 121595110 4674455 complement(2953080..2954090) 1 NC_008782.1 PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2954090 4674455 Ajs_2789 Acidovorax sp. JS42 HpcH/HpaI aldolase YP_987006.1 2953080 R 232721 CDS YP_987007.1 121595111 4674380 complement(2954087..2954863) 1 NC_008782.1 catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase 2954863 4674380 Ajs_2790 Acidovorax sp. JS42 trans-aconitate 2-methyltransferase YP_987007.1 2954087 R 232721 CDS YP_987008.1 121595112 4674373 complement(2954876..2955928) 1 NC_008782.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 2955928 4674373 Ajs_2791 Acidovorax sp. JS42 malate dehydrogenase YP_987008.1 2954876 R 232721 CDS YP_987009.1 121595113 4674367 2955998..2956852 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family; GntR family transcriptional regulator 2956852 4674367 Ajs_2792 Acidovorax sp. JS42 GntR family transcriptional regulator YP_987009.1 2955998 D 232721 CDS YP_987010.1 121595114 4674370 2956992..2957426 1 NC_008782.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase subunit C 2957426 4674370 Ajs_2793 Acidovorax sp. JS42 succinate dehydrogenase subunit C YP_987010.1 2956992 D 232721 CDS YP_987011.1 121595115 4674345 2957470..2957835 1 NC_008782.1 KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase subunit D 2957835 4674345 Ajs_2794 Acidovorax sp. JS42 succinate dehydrogenase subunit D YP_987011.1 2957470 D 232721 CDS YP_987012.1 121595116 4674335 2957858..2959663 1 NC_008782.1 KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase subunit A 2959663 4674335 Ajs_2795 Acidovorax sp. JS42 succinate dehydrogenase subunit A YP_987012.1 2957858 D 232721 CDS YP_987013.1 121595117 4674355 2959694..2960398 1 NC_008782.1 KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase subunit B 2960398 4674355 Ajs_2796 Acidovorax sp. JS42 succinate dehydrogenase subunit B YP_987013.1 2959694 D 232721 CDS YP_987014.1 121595118 4674346 2960404..2960676 1 NC_008782.1 PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339; hypothetical protein 2960676 4674346 Ajs_2797 Acidovorax sp. JS42 hypothetical protein YP_987014.1 2960404 D 232721 CDS YP_987015.1 121595119 4674132 2960719..2962029 1 NC_008782.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2962029 gltA 4674132 gltA Acidovorax sp. JS42 type II citrate synthase YP_987015.1 2960719 D 232721 CDS YP_987016.1 121595120 4674321 2962344..2962610 1 NC_008782.1 PFAM: protein of unknown function DUF156; KEGG: bms:BR0131 hypothetical protein; hypothetical protein 2962610 4674321 Ajs_2799 Acidovorax sp. JS42 hypothetical protein YP_987016.1 2962344 D 232721 CDS YP_987017.1 121595121 4674102 2962646..2963761 1 NC_008782.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6311 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2963761 4674102 Ajs_2800 Acidovorax sp. JS42 alcohol dehydrogenase YP_987017.1 2962646 D 232721 CDS YP_987018.1 121595122 4674289 2963868..2964752 1 NC_008782.1 PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase; carboxylesterase 2964752 4674289 Ajs_2801 Acidovorax sp. JS42 carboxylesterase YP_987018.1 2963868 D 232721 CDS YP_987019.1 121595123 4674299 complement(2964943..2965242) 1 NC_008782.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mlo:mll2956 hypothetical protein; antibiotic biosynthesis monooxygenase 2965242 4674299 Ajs_2802 Acidovorax sp. JS42 antibiotic biosynthesis monooxygenase YP_987019.1 2964943 R 232721 CDS YP_987020.1 121595124 4674135 complement(2965298..2966506) 1 NC_008782.1 PFAM: Radical SAM domain protein; KEGG: pol:Bpro_3135 radical SAM; radical SAM domain-containing protein 2966506 4674135 Ajs_2803 Acidovorax sp. JS42 radical SAM domain-containing protein YP_987020.1 2965298 R 232721 CDS YP_987021.1 121595125 4674272 complement(2966520..2967521) 1 NC_008782.1 KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 2967521 4674272 Ajs_2804 Acidovorax sp. JS42 hypothetical protein YP_987021.1 2966520 R 232721 CDS YP_987022.1 121595126 4674253 2967830..2968237 1 NC_008782.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor; GreA/GreB family elongation factor 2968237 4674253 Ajs_2805 Acidovorax sp. JS42 GreA/GreB family elongation factor YP_987022.1 2967830 D 232721 CDS YP_987023.1 121595127 4674119 complement(2968291..2969454) 1 NC_008782.1 PFAM: acyltransferase 3; KEGG: pol:Bpro_3139 acyltransferase 3; acyltransferase 3 2969454 4674119 Ajs_2806 Acidovorax sp. JS42 acyltransferase 3 YP_987023.1 2968291 R 232721 CDS YP_987024.1 121595128 4674237 complement(2969641..2970597) 1 NC_008782.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 2970597 4674237 Ajs_2807 Acidovorax sp. JS42 2-nitropropane dioxygenase YP_987024.1 2969641 R 232721 CDS YP_987025.1 121595129 4674060 complement(2970676..2972466) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 2972466 4674060 Ajs_2808 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987025.1 2970676 R 232721 CDS YP_987026.1 121595130 4674236 complement(2972548..2973480) 1 NC_008782.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 2973480 4674236 Ajs_2809 Acidovorax sp. JS42 electron transfer flavoprotein subunit alpha YP_987026.1 2972548 R 232721 CDS YP_987027.1 121595131 4674232 complement(2973502..2974251) 1 NC_008782.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 2974251 4674232 Ajs_2810 Acidovorax sp. JS42 electron transfer flavoprotein subunit beta YP_987027.1 2973502 R 232721 CDS YP_987028.1 121595132 4674229 complement(2974413..2975696) 1 NC_008782.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2975696 4674229 Ajs_2811 Acidovorax sp. JS42 mechanosensitive ion channel protein MscS YP_987028.1 2974413 R 232721 CDS YP_987029.1 121595133 4674211 complement(2975716..2976534) 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase 2976534 4674211 Ajs_2812 Acidovorax sp. JS42 enoyl-CoA hydratase YP_987029.1 2975716 R 232721 CDS YP_987030.1 121595134 4674204 complement(2976583..2977542) 1 NC_008782.1 PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily; histone deacetylase superfamily protein 2977542 4674204 Ajs_2813 Acidovorax sp. JS42 histone deacetylase superfamily protein YP_987030.1 2976583 R 232721 CDS YP_987031.1 121595135 4674212 2977581..2978501 1 NC_008782.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_2529 AAA_3 ATPase; ATPase 2978501 4674212 Ajs_2814 Acidovorax sp. JS42 ATPase YP_987031.1 2977581 D 232721 CDS YP_987032.1 121595136 4674201 2978506..2979531 1 NC_008782.1 PFAM: protein of unknown function DUF58; KEGG: rfr:Rfer_2530 protein of unknown function DUF58; hypothetical protein 2979531 4674201 Ajs_2815 Acidovorax sp. JS42 hypothetical protein YP_987032.1 2978506 D 232721 CDS YP_987033.1 121595137 4674198 2979631..2981697 1 NC_008782.1 PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_2531 transglutaminase-like; transglutaminase domain-containing protein 2981697 4674198 Ajs_2816 Acidovorax sp. JS42 transglutaminase domain-containing protein YP_987033.1 2979631 D 232721 CDS YP_987034.1 121595138 4674181 2981694..2982767 1 NC_008782.1 TIGRFAM: lytic murein transglycosylase B; KEGG: rfr:Rfer_2545 lytic murein transglycosylase B; lytic murein transglycosylase B 2982767 4674181 Ajs_2817 Acidovorax sp. JS42 lytic murein transglycosylase B YP_987034.1 2981694 D 232721 CDS YP_987035.1 121595139 4674179 complement(2982781..2983695) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2184 transcriptional regulator, LysR family; LysR family transcriptional regulator 2983695 4674179 Ajs_2818 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987035.1 2982781 R 232721 CDS YP_987036.1 121595140 4674131 2983809..2984891 1 NC_008782.1 PFAM: conserved hypothetical protein 698; KEGG: pae:PA5383 hypothetical protein; hypothetical protein 2984891 4674131 Ajs_2819 Acidovorax sp. JS42 hypothetical protein YP_987036.1 2983809 D 232721 CDS YP_987037.1 121595141 4674149 complement(2984892..2986205) 1 NC_008782.1 KEGG: rfr:Rfer_1487 putative transporter signal peptide protein; putative transporter signal peptide protein 2986205 4674149 Ajs_2820 Acidovorax sp. JS42 putative transporter signal peptide protein YP_987037.1 2984892 R 232721 CDS YP_987038.1 121595142 4673737 complement(2986258..2987067) 1 NC_008782.1 KEGG: pfl:PFL_3978 lipoprotein, putative; putative lipoprotein 2987067 4673737 Ajs_2821 Acidovorax sp. JS42 putative lipoprotein YP_987038.1 2986258 R 232721 CDS YP_987039.1 121595143 4673720 2987279..2987719 1 NC_008782.1 PFAM: CS; KEGG: pol:Bpro_3264 heat shock protein HSP20; CS protein 2987719 4673720 Ajs_2822 Acidovorax sp. JS42 CS protein YP_987039.1 2987279 D 232721 CDS YP_987040.1 121595144 4673707 complement(2987975..2989183) 1 NC_008782.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214; hypothetical protein 2989183 4673707 Ajs_2823 Acidovorax sp. JS42 hypothetical protein YP_987040.1 2987975 R 232721 CDS YP_987041.1 121595145 4673661 complement(2989180..2989950) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related; ABC transporter-like protein 2989950 4673661 Ajs_2824 Acidovorax sp. JS42 ABC transporter-like protein YP_987041.1 2989180 R 232721 CDS YP_987042.1 121595146 4673571 complement(2989947..2991347) 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD; Fis family transcriptional regulator 2991347 4673571 Ajs_2825 Acidovorax sp. JS42 Fis family transcriptional regulator YP_987042.1 2989947 R 232721 CDS YP_987043.1 121595147 4673567 complement(2991419..2992846) 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 2992846 4673567 Ajs_2826 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_987043.1 2991419 R 232721 CDS YP_987044.1 121595148 4673459 2993005..2994456 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: bpm:BURPS1710b_1049 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2994456 4673459 Ajs_2827 Acidovorax sp. JS42 aldehyde dehydrogenase YP_987044.1 2993005 D 232721 CDS YP_987045.1 121595149 4673437 complement(2994526..2995629) 1 NC_008782.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2995629 4673437 Ajs_2828 Acidovorax sp. JS42 putative DNA-binding/iron metalloprotein/AP endonuclease YP_987045.1 2994526 R 232721 CDS YP_987046.1 121595150 4673414 complement(2995653..2996831) 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A0821 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor 2996831 4673414 Ajs_2829 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987046.1 2995653 R 232721 CDS YP_987047.1 121595151 4673242 2996974..2997594 1 NC_008782.1 PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2997594 4673242 Ajs_2830 Acidovorax sp. JS42 response regulator receiver/ANTAR domain-containing protein YP_987047.1 2996974 D 232721 CDS YP_987048.1 121595152 4673252 2997926..2999170 1 NC_008782.1 KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2999170 4673252 Ajs_2831 Acidovorax sp. JS42 twin-arginine translocation pathway signal protein YP_987048.1 2997926 D 232721 CDS YP_987049.1 121595153 4673235 2999205..3000146 1 NC_008782.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2555 nitrate transport permease; nitrate ABC transporter inner membrane subunit 3000146 4673235 Ajs_2832 Acidovorax sp. JS42 nitrate ABC transporter inner membrane subunit YP_987049.1 2999205 D 232721 CDS YP_987050.1 121595154 4673385 3000143..3000946 1 NC_008782.1 KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D 3000946 4673385 Ajs_2833 Acidovorax sp. JS42 nitrate ABC transporter ATPases C and D YP_987050.1 3000143 D 232721 CDS YP_987051.1 121595155 4673331 complement(3001123..3001560) 1 NC_008782.1 PFAM: CBS domain containing protein; KEGG: bpm:BURPS1710b_A2480 CBS domain protein; signal-transduction protein 3001560 4673331 Ajs_2834 Acidovorax sp. JS42 signal-transduction protein YP_987051.1 3001123 R 232721 CDS YP_987052.1 121595156 4672731 complement(3001740..3002408) 1 NC_008782.1 KEGG: xcb:XC_3036 hypothetical protein; hypothetical protein 3002408 4672731 Ajs_2835 Acidovorax sp. JS42 hypothetical protein YP_987052.1 3001740 R 232721 CDS YP_987053.1 121595157 4672950 3002785..3004125 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_0965 multidrug/solvent RND membrane fusion protein, putative; RND family efflux transporter MFP subunit 3004125 4672950 Ajs_2836 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_987053.1 3002785 D 232721 CDS YP_987054.1 121595158 4672938 3004144..3007311 1 NC_008782.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: psb:Psyr_2865 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3007311 4672938 Ajs_2837 Acidovorax sp. JS42 hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_987054.1 3004144 D 232721 CDS YP_987055.1 121595159 4672681 3007308..3008894 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1416 RND efflux system outer membrane lipoprotein NodT; RND efflux system outer membrane lipoprotein 3008894 4672681 Ajs_2838 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_987055.1 3007308 D 232721 CDS YP_987056.1 121595160 4672872 3009383..3011848 1 NC_008782.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB; assimilatory nitrite reductase (NAD(P)H) large subunit 3011848 4672872 Ajs_2839 Acidovorax sp. JS42 assimilatory nitrite reductase (NAD(P)H) large subunit YP_987056.1 3009383 D 232721 CDS YP_987057.1 121595161 4672696 3011925..3012314 1 NC_008782.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD; assimilatory nitrite reductase (NAD(P)H) small subunit 3012314 4672696 Ajs_2840 Acidovorax sp. JS42 assimilatory nitrite reductase (NAD(P)H) small subunit YP_987057.1 3011925 D 232721 CDS YP_987058.1 121595162 4672678 3012685..3015543 1 NC_008782.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase; assimilatory nitrate reductase (NADH) subunit alpha apoprotein 3015543 4672678 Ajs_2841 Acidovorax sp. JS42 assimilatory nitrate reductase (NADH) subunit alpha apoprotein YP_987058.1 3012685 D 232721 CDS YP_987059.1 121595163 4672675 3015637..3016566 1 NC_008782.1 PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3; glycosyl transferase family protein 3016566 4672675 Ajs_2842 Acidovorax sp. JS42 glycosyl transferase family protein YP_987059.1 3015637 D 232721 CDS YP_987060.1 121595164 4672650 3016563..3017372 1 NC_008782.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_2883 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase 3017372 4672650 Ajs_2843 Acidovorax sp. JS42 uroporphyrinogen-III C-methyltransferase YP_987060.1 3016563 D 232721 CDS YP_987061.1 121595165 4672478 complement(3017377..3017877) 1 NC_008782.1 PFAM: thioesterase superfamily protein; KEGG: dar:Daro_3519 thioesterase superfamily; thioesterase superfamily protein 3017877 4672478 Ajs_2844 Acidovorax sp. JS42 thioesterase superfamily protein YP_987061.1 3017377 R 232721 CDS YP_987062.1 121595166 4672793 3018071..3019237 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B5396 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3019237 4672793 Ajs_2845 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987062.1 3018071 D 232721 CDS YP_987063.1 121595167 4672786 3019308..3020549 1 NC_008782.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2884 HI0933-like protein; hypothetical protein 3020549 4672786 Ajs_2846 Acidovorax sp. JS42 hypothetical protein YP_987063.1 3019308 D 232721 CDS YP_987064.1 121595168 4672552 3020652..3021857 1 NC_008782.1 PFAM: NnrS family protein; KEGG: rfr:Rfer_1884 NnrS; NnrS family protein 3021857 4672552 Ajs_2847 Acidovorax sp. JS42 NnrS family protein YP_987064.1 3020652 D 232721 CDS YP_987065.1 121595169 4672782 3021928..3022227 1 NC_008782.1 KEGG: bps:BPSL2375 hypothetical protein; hypothetical protein 3022227 4672782 Ajs_2848 Acidovorax sp. JS42 hypothetical protein YP_987065.1 3021928 D 232721 CDS YP_987066.1 121595170 4672649 complement(3022295..3022852) 1 NC_008782.1 PFAM: protein of unknown function DUF59; KEGG: bte:BTH_I1792 domain of unknown function domain protein; hypothetical protein 3022852 4672649 Ajs_2849 Acidovorax sp. JS42 hypothetical protein YP_987066.1 3022295 R 232721 CDS YP_987067.1 121595171 4672657 complement(3022849..3023328) 1 NC_008782.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bps:BPSL2373 NifU family protein; NifU family SUF system FeS assembly protein 3023328 4672657 Ajs_2850 Acidovorax sp. JS42 NifU family SUF system FeS assembly protein YP_987067.1 3022849 R 232721 CDS YP_987068.1 121595172 4671999 complement(3023325..3024590) 1 NC_008782.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bte:BTH_I1794 cysteine desulfurase SufS; class V aminotransferase 3024590 4671999 Ajs_2851 Acidovorax sp. JS42 class V aminotransferase YP_987068.1 3023325 R 232721 CDS YP_987069.1 121595173 4672198 complement(3024583..3025830) 1 NC_008782.1 PFAM: SufBD protein; KEGG: bte:BTH_I1795 SufD domain protein; SufBD protein 3025830 4672198 Ajs_2852 Acidovorax sp. JS42 SufBD protein YP_987069.1 3024583 R 232721 CDS YP_987070.1 121595174 4671975 complement(3025835..3026605) 1 NC_008782.1 KEGG: bte:BTH_I1796 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 3026605 4671975 Ajs_2853 Acidovorax sp. JS42 FeS assembly ATPase SufC YP_987070.1 3025835 R 232721 CDS YP_987071.1 121595175 4672159 complement(3026686..3028179) 1 NC_008782.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 3028179 4672159 Ajs_2854 Acidovorax sp. JS42 cysteine desulfurase activator complex subunit SufB YP_987071.1 3026686 R 232721 CDS YP_987072.1 121595176 4671984 complement(3028332..3029129) 1 NC_008782.1 PFAM: regulatory protein, ArsR; KEGG: bms:BR1913 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 3029129 4671984 Ajs_2855 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_987072.1 3028332 R 232721 CDS YP_987073.1 121595177 4671979 3029160..3029513 1 NC_008782.1 PFAM: NIPSNAP family containing protein; KEGG: bxe:Bxe_B1182 hypothetical protein; NIPSNAP family protein 3029513 4671979 Ajs_2856 Acidovorax sp. JS42 NIPSNAP family protein YP_987073.1 3029160 D 232721 CDS YP_987074.1 121595178 4672119 3029510..3029914 1 NC_008782.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbr:BB3722 hypothetical protein; antibiotic biosynthesis monooxygenase 3029914 4672119 Ajs_2857 Acidovorax sp. JS42 antibiotic biosynthesis monooxygenase YP_987074.1 3029510 D 232721 CDS YP_987075.1 121595179 4671933 3030044..3030256 1 NC_008782.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3030256 rpsU 4671933 rpsU Acidovorax sp. JS42 30S ribosomal protein S21 YP_987075.1 3030044 D 232721 CDS YP_987076.1 121595180 4671955 3030354..3030815 1 NC_008782.1 PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY; GatB/Yqey domain-containing protein 3030815 4671955 Ajs_2859 Acidovorax sp. JS42 GatB/Yqey domain-containing protein YP_987076.1 3030354 D 232721 CDS YP_987077.1 121595181 4671498 3031155..3032249 1 NC_008782.1 KEGG: rso:RSp1612 probable tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 3032249 4671498 Ajs_2860 Acidovorax sp. JS42 tartrate dehydrogenase YP_987077.1 3031155 D 232721 CDS YP_987078.1 121595182 4671407 3032454..3032726 1 NC_008782.1 PFAM: protein of unknown function DUF156; KEGG: atc:AGR_C_1623 hypothetical protein; hypothetical protein 3032726 4671407 Ajs_2861 Acidovorax sp. JS42 hypothetical protein YP_987078.1 3032454 D 232721 CDS YP_987079.1 121595183 4671406 3032723..3033724 1 NC_008782.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein; cation diffusion facilitator family transporter 3033724 4671406 Ajs_2862 Acidovorax sp. JS42 cation diffusion facilitator family transporter YP_987079.1 3032723 D 232721 CDS YP_987080.1 121595184 4671471 3033736..3034380 1 NC_008782.1 PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein; hypothetical protein 3034380 4671471 Ajs_2863 Acidovorax sp. JS42 hypothetical protein YP_987080.1 3033736 D 232721 CDS YP_987081.1 121595185 4671654 3034406..3034837 1 NC_008782.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: aci:ACIAD0422 hypothetical protein; glutathione-dependent formaldehyde-activating protein 3034837 4671654 Ajs_2864 Acidovorax sp. JS42 glutathione-dependent formaldehyde-activating protein YP_987081.1 3034406 D 232721 CDS YP_987082.1 121595186 4671470 3035182..3036261 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 3036261 4671470 Ajs_2865 Acidovorax sp. JS42 integrase catalytic subunit YP_987082.1 3035182 D 232721 CDS YP_987083.1 121595187 4671468 3036370..3037458 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3037458 4671468 Ajs_2866 Acidovorax sp. JS42 transposase, IS4 family protein YP_987083.1 3036370 D 232721 CDS YP_987084.1 121595188 4671641 3037716..3038591 1 NC_008782.1 KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 3038591 4671641 Ajs_2867 Acidovorax sp. JS42 glutamate racemase YP_987084.1 3037716 D 232721 CDS YP_987085.1 121595189 4671451 complement(3038659..3039174) 1 NC_008782.1 PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45; hypothetical protein 3039174 4671451 Ajs_2868 Acidovorax sp. JS42 hypothetical protein YP_987085.1 3038659 R 232721 CDS YP_987086.1 121595190 4671610 complement(3039239..3040228) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A2106 hypothetical protein; hypothetical protein 3040228 4671610 Ajs_2869 Acidovorax sp. JS42 hypothetical protein YP_987086.1 3039239 R 232721 CDS YP_987087.1 121595191 4671415 complement(3040276..3041277) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065; hypothetical protein 3041277 4671415 Ajs_2870 Acidovorax sp. JS42 hypothetical protein YP_987087.1 3040276 R 232721 CDS YP_987088.1 121595192 4671411 complement(3041314..3042297) 1 NC_008782.1 PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_A2729 putative hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase 3042297 4671411 Ajs_2871 Acidovorax sp. JS42 hydroxymethylglutaryl-CoA lyase YP_987088.1 3041314 R 232721 CDS YP_987089.1 121595193 4670959 complement(3042294..3043514) 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A2730 predicted acyl-CoA transferases/carnitine dehydratase, CaiB/BaiF family; L-carnitine dehydratase/bile acid-inducible protein F 3043514 4670959 Ajs_2872 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_987089.1 3042294 R 232721 CDS YP_987090.1 121595194 4670540 3043635..3044534 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mca:MCA0999 transcriptional regulator, LysR family; LysR family transcriptional regulator 3044534 4670540 Ajs_2873 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987090.1 3043635 D 232721 CDS YP_987091.1 121595195 4670878 3044531..3045643 1 NC_008782.1 KEGG: pol:Bpro_3073 hypothetical protein; hypothetical protein 3045643 4670878 Ajs_2874 Acidovorax sp. JS42 hypothetical protein YP_987091.1 3044531 D 232721 CDS YP_987092.1 121595196 4670869 3045810..3046364 1 NC_008782.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3046364 4670869 Ajs_2875 Acidovorax sp. JS42 elongation factor P YP_987092.1 3045810 D 232721 CDS YP_987093.1 121595197 4670815 complement(3046479..3046985) 1 NC_008782.1 KEGG: pol:Bpro_4141 hypothetical protein; hypothetical protein 3046985 4670815 Ajs_2876 Acidovorax sp. JS42 hypothetical protein YP_987093.1 3046479 R 232721 CDS YP_987094.1 121595198 4670522 complement(3047085..3049172) 1 NC_008782.1 PFAM: Na+/solute symporter; KEGG: rfr:Rfer_2192 Na+/solute symporter; Na+/solute symporter 3049172 4670522 Ajs_2877 Acidovorax sp. JS42 Na+/solute symporter YP_987094.1 3047085 R 232721 CDS YP_987095.1 121595199 4670519 complement(3049165..3049482) 1 NC_008782.1 KEGG: rfr:Rfer_2192 Na+/solute symporter; hypothetical protein 3049482 4670519 Ajs_2878 Acidovorax sp. JS42 hypothetical protein YP_987095.1 3049165 R 232721 CDS YP_987096.1 121595200 4670768 complement(3049503..3051893) 1 NC_008782.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 3051893 4670768 Ajs_2879 Acidovorax sp. JS42 phosphoenolpyruvate synthase YP_987096.1 3049503 R 232721 CDS YP_987097.1 121595201 4670723 3052117..3052947 1 NC_008782.1 PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299; hypothetical protein 3052947 4670723 Ajs_2880 Acidovorax sp. JS42 hypothetical protein YP_987097.1 3052117 D 232721 CDS YP_987098.1 121595202 4670722 complement(3053048..3054604) 1 NC_008782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbo:SBO_0471 alkyl hydroperoxide reductase, F52a subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3054604 4670722 Ajs_2881 Acidovorax sp. JS42 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_987098.1 3053048 R 232721 CDS YP_987099.1 121595203 4670705 complement(3054710..3055273) 1 NC_008782.1 with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C 3055273 4670705 Ajs_2882 Acidovorax sp. JS42 alkyl hydroperoxide reductase subunit C YP_987099.1 3054710 R 232721 CDS YP_987100.1 121595204 4670703 3055511..3055987 1 NC_008782.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin 3055987 4670703 Ajs_2883 Acidovorax sp. JS42 bacterioferritin YP_987100.1 3055511 D 232721 CDS YP_987101.1 121595205 4670508 3056292..3056621 1 NC_008782.1 PFAM: flagellar transcriptional activator; KEGG: rfr:Rfer_3700 flagellar transcriptional activator FlhD; flagellar transcriptional activator, FlhD subunit 3056621 4670508 Ajs_2884 Acidovorax sp. JS42 flagellar transcriptional activator, FlhD subunit YP_987101.1 3056292 D 232721 CDS YP_987102.1 121595206 4670670 3056663..3057202 1 NC_008782.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 3057202 4670670 Ajs_2885 Acidovorax sp. JS42 transcriptional activator FlhC YP_987102.1 3056663 D 232721 CDS YP_987103.1 121595207 4670663 complement(3057284..3057856) 1 NC_008782.1 KEGG: mfa:Mfla_2213 hypothetical protein; hypothetical protein 3057856 4670663 Ajs_2886 Acidovorax sp. JS42 hypothetical protein YP_987103.1 3057284 R 232721 CDS YP_987104.1 121595208 4670634 complement(3057853..3058467) 1 NC_008782.1 KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein 3058467 4670634 Ajs_2887 Acidovorax sp. JS42 hypothetical protein YP_987104.1 3057853 R 232721 CDS YP_987105.1 121595209 4670629 complement(3058565..3060748) 1 NC_008782.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: pfo:Pfl_5250 intergral membrane protein; YccS/YhfK family integral membrane protein 3060748 4670629 Ajs_2888 Acidovorax sp. JS42 YccS/YhfK family integral membrane protein YP_987105.1 3058565 R 232721 CDS YP_987106.1 121595210 4670612 complement(3060759..3063608) 1 NC_008782.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 3063608 4670612 Ajs_2889 Acidovorax sp. JS42 phosphoenolpyruvate carboxylase YP_987106.1 3060759 R 232721 CDS YP_987107.1 121595211 4670637 3063703..3064665 1 NC_008782.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3064665 hemC 4670637 hemC Acidovorax sp. JS42 porphobilinogen deaminase YP_987107.1 3063703 D 232721 CDS YP_987108.1 121595212 4670864 3064668..3065486 1 NC_008782.1 KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase; uroporphyrinogen-III synthase 3065486 4670864 Ajs_2891 Acidovorax sp. JS42 uroporphyrinogen-III synthase YP_987108.1 3064668 D 232721 CDS YP_987109.1 121595213 4671059 3065476..3066552 1 NC_008782.1 PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX; hypothetical protein 3066552 4671059 Ajs_2892 Acidovorax sp. JS42 hypothetical protein YP_987109.1 3065476 D 232721 CDS YP_987110.1 121595214 4671091 3066576..3067859 1 NC_008782.1 PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein; HemY domain-containing protein 3067859 4671091 Ajs_2893 Acidovorax sp. JS42 HemY domain-containing protein YP_987110.1 3066576 D 232721 CDS YP_987111.1 121595215 4671163 complement(3067876..3068838) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 3068838 4671163 Ajs_2894 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987111.1 3067876 R 232721 CDS YP_987112.1 121595216 4671316 3069221..3069841 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3717 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3069841 4671316 Ajs_2895 Acidovorax sp. JS42 glyoxalase/bleomycin resistance protein/dioxygenase YP_987112.1 3069221 D 232721 CDS YP_987113.1 121595217 4671186 3069914..3072844 1 NC_008782.1 TIGRFAM: valyl-tRNA synthetase; KEGG: rfr:Rfer_2376 valyl-tRNA synthetase; valyl-tRNA synthetase 3072844 4671186 Ajs_2896 Acidovorax sp. JS42 valyl-tRNA synthetase YP_987113.1 3069914 D 232721 CDS YP_987114.1 121595218 4671308 3072923..3073810 1 NC_008782.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_3723 UTP-glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase 3073810 4671308 Ajs_2897 Acidovorax sp. JS42 UDP-glucose pyrophosphorylase YP_987114.1 3072923 D 232721 CDS YP_987115.1 121595219 4671275 complement(3073922..3074149) 1 NC_008782.1 PFAM: SirA family protein; KEGG: rfr:Rfer_2377 SirA-like; SirA family protein 3074149 4671275 Ajs_2898 Acidovorax sp. JS42 SirA family protein YP_987115.1 3073922 R 232721 CDS YP_987116.1 121595220 4671657 complement(3074155..3074718) 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase; NUDIX hydrolase 3074718 4671657 Ajs_2899 Acidovorax sp. JS42 NUDIX hydrolase YP_987116.1 3074155 R 232721 CDS YP_987117.1 121595221 4671505 complement(3074834..3075739) 1 NC_008782.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 3075739 cysM 4671505 cysM Acidovorax sp. JS42 cysteine synthase B YP_987117.1 3074834 R 232721 CDS YP_987118.1 121595222 4671940 complement(3076351..3076593) 1 NC_008782.1 KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein 3076593 4671940 Ajs_2901 Acidovorax sp. JS42 hypothetical protein YP_987118.1 3076351 R 232721 CDS YP_987119.1 121595223 4671925 complement(3076590..3077852) 1 NC_008782.1 PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein; conjugation TrbI family protein 3077852 4671925 Ajs_2902 Acidovorax sp. JS42 conjugation TrbI family protein YP_987119.1 3076590 R 232721 CDS YP_987120.1 121595224 4671945 complement(3077854..3078834) 1 NC_008782.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein; conjugal transfer protein TrbG/VirB9/CagX 3078834 4671945 Ajs_2903 Acidovorax sp. JS42 conjugal transfer protein TrbG/VirB9/CagX YP_987120.1 3077854 R 232721 CDS YP_987121.1 121595225 4671901 complement(3078831..3079535) 1 NC_008782.1 PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1557 conjugal transfer protein; conjugal transfer protein TrbF 3079535 4671901 Ajs_2904 Acidovorax sp. JS42 conjugal transfer protein TrbF YP_987121.1 3078831 R 232721 CDS YP_987122.1 121595226 4671841 complement(3079554..3080888) 1 NC_008782.1 type IV secretion VirB6 family; conjugal transfer protein TrbL 3080888 4671841 Ajs_2905 Acidovorax sp. JS42 conjugal transfer protein TrbL YP_987122.1 3079554 R 232721 CDS YP_987123.1 121595227 4672397 complement(3080885..3081208) 1 NC_008782.1 KEGG: bam:Bamb_2009 putative lipoprotein; putative lipoprotein 3081208 4672397 Ajs_2906 Acidovorax sp. JS42 putative lipoprotein YP_987123.1 3080885 R 232721 CDS YP_987124.1 121595228 4672425 complement(3081220..3081948) 1 NC_008782.1 KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ 3081948 4672425 Ajs_2907 Acidovorax sp. JS42 conjugal transfer protein TrbJ YP_987124.1 3081220 R 232721 CDS YP_987125.1 121595229 4672490 complement(3081945..3084380) 1 NC_008782.1 type IV secretion system VirB4 family; conjugal transfer ATPase TrbE 3084380 4672490 Ajs_2908 Acidovorax sp. JS42 conjugal transfer ATPase TrbE YP_987125.1 3081945 R 232721 CDS YP_987126.1 121595230 4672507 complement(3084390..3084662) 1 NC_008782.1 KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein 3084662 4672507 Ajs_2909 Acidovorax sp. JS42 putative conjugal transfer TrbD transmembrane protein YP_987126.1 3084390 R 232721 CDS YP_987127.1 121595231 4672513 complement(3084659..3085036) 1 NC_008782.1 PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1342 conjugal transfer protein TrbC; conjugal transfer protein TrbC 3085036 4672513 Ajs_2910 Acidovorax sp. JS42 conjugal transfer protein TrbC YP_987127.1 3084659 R 232721 CDS YP_987128.1 121595232 4673030 complement(3085033..3086067) 1 NC_008782.1 PFAM: type II secretion system protein E; KEGG: rme:Rmet_1341 type II secretion system protein E; type II secretion system protein E 3086067 4673030 Ajs_2911 Acidovorax sp. JS42 type II secretion system protein E YP_987128.1 3085033 R 232721 CDS YP_987129.1 121595233 4673129 complement(3086064..3086510) 1 NC_008782.1 KEGG: bam:Bamb_2003 CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein 3086510 4673129 Ajs_2912 Acidovorax sp. JS42 CopG/DNA-binding domain-containing protein YP_987129.1 3086064 R 232721 CDS YP_987130.1 121595234 4673856 complement(3086507..3088504) 1 NC_008782.1 type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG 3088504 4673856 Ajs_2913 Acidovorax sp. JS42 conjugal transfer coupling protein TraG YP_987130.1 3086507 R 232721 CDS YP_987131.1 121595235 4673151 complement(3088740..3089018) 1 NC_008782.1 KEGG: rme:Rmet_1547 putative lipoprotein; putative lipoprotein 3089018 4673151 Ajs_2915 Acidovorax sp. JS42 putative lipoprotein YP_987131.1 3088740 R 232721 CDS YP_987132.1 121595236 4673103 complement(3089151..3090665) 1 NC_008782.1 PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 3090665 4673103 Ajs_2916 Acidovorax sp. JS42 transposase IS66 YP_987132.1 3089151 R 232721 CDS YP_987133.1 121595237 4673734 complement(3090746..3091057) 1 NC_008782.1 PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein 3091057 4673734 Ajs_2917 Acidovorax sp. JS42 IS66 Orf2 family protein YP_987133.1 3090746 R 232721 CDS YP_987134.1 121595238 4673768 complement(3091078..3091530) 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein 3091530 4673768 Ajs_2918 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_987134.1 3091078 R 232721 CDS YP_987135.1 121595239 4673835 complement(3091527..3092432) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_30970 putative transcriptional regulator; LysR family transcriptional regulator 3092432 4673835 Ajs_2919 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987135.1 3091527 R 232721 CDS YP_987136.1 121595240 4673938 complement(3092469..3092786) 1 NC_008782.1 KEGG: bxe:Bxe_A1158 hypothetical protein; hypothetical protein 3092786 4673938 Ajs_2920 Acidovorax sp. JS42 hypothetical protein YP_987136.1 3092469 R 232721 CDS YP_987137.1 121595241 4673945 complement(3092812..3093846) 1 NC_008782.1 PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A1157 MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily; secretion protein HlyD family protein 3093846 4673945 Ajs_2921 Acidovorax sp. JS42 secretion protein HlyD family protein YP_987137.1 3092812 R 232721 CDS YP_987138.1 121595242 4674203 complement(3094607..3095569) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 3095569 4674203 Ajs_2923 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987138.1 3094607 R 232721 CDS YP_987139.1 121595243 4673299 complement(3096608..3098143) 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A1155 MFS efflux system, outer membrane porin; RND efflux system outer membrane lipoprotein 3098143 4673299 Ajs_2924 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_987139.1 3096608 R 232721 CDS YP_987140.1 121595244 4673281 3098244..3099023 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: bxe:Bxe_A1138 transcriptional regulator, TetR family; TetR family transcriptional regulator 3099023 4673281 Ajs_2925 Acidovorax sp. JS42 TetR family transcriptional regulator YP_987140.1 3098244 D 232721 CDS YP_987141.1 121595245 4673509 3099023..3099514 1 NC_008782.1 PFAM: regulatory protein, MarR; KEGG: bxe:Bxe_A1137 transcriptional regulator, MarR family; MarR family transcriptional regulator 3099514 4673509 Ajs_2926 Acidovorax sp. JS42 MarR family transcriptional regulator YP_987141.1 3099023 D 232721 CDS YP_987142.1 121595246 4673248 3099511..3100470 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3100470 4673248 Ajs_2927 Acidovorax sp. JS42 transposase, IS4 family protein YP_987142.1 3099511 D 232721 CDS YP_987143.1 121595247 4672997 complement(3103047..3103658) 1 NC_008782.1 KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein; TraF peptidase 3103658 4672997 Ajs_2929 Acidovorax sp. JS42 TraF peptidase YP_987143.1 3103047 R 232721 CDS YP_987144.1 121595248 4672791 complement(3103655..3104200) 1 NC_008782.1 KEGG: pau:PA14_31090 hypothetical protein; hypothetical protein 3104200 4672791 Ajs_2930 Acidovorax sp. JS42 hypothetical protein YP_987144.1 3103655 R 232721 CDS YP_987145.1 121595249 4672379 complement(3104197..3104472) 1 NC_008782.1 KEGG: rme:Rmet_3022 hypothetical protein; hypothetical protein 3104472 4672379 Ajs_2931 Acidovorax sp. JS42 hypothetical protein YP_987145.1 3104197 R 232721 CDS YP_987146.1 121595250 4672019 complement(3104469..3105107) 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3105107 4672019 Ajs_2932 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_987146.1 3104469 R 232721 CDS YP_987147.1 121595251 4672248 complement(3105361..3106218) 1 NC_008782.1 KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 3106218 4672248 Ajs_2933 Acidovorax sp. JS42 putative replication initiator and transcription repressor protein YP_987147.1 3105361 R 232721 CDS YP_987148.1 121595252 4671997 complement(3106245..3106565) 1 NC_008782.1 KEGG: rme:Rmet_1484 hypothetical protein; hypothetical protein 3106565 4671997 Ajs_2934 Acidovorax sp. JS42 hypothetical protein YP_987148.1 3106245 R 232721 CDS YP_987149.1 121595253 4672143 complement(3106634..3107383) 1 NC_008782.1 KEGG: rme:Rmet_3026 hypothetical protein; hypothetical protein 3107383 4672143 Ajs_2935 Acidovorax sp. JS42 hypothetical protein YP_987149.1 3106634 R 232721 CDS YP_987150.1 121595254 4672111 complement(3107725..3108072) 1 NC_008782.1 KEGG: rme:Rmet_3027 putative lipoprotein; putative lipoprotein 3108072 4672111 Ajs_2936 Acidovorax sp. JS42 putative lipoprotein YP_987150.1 3107725 R 232721 CDS YP_987151.1 121595255 4671738 3108295..3108588 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 3108588 4671738 Ajs_2937 Acidovorax sp. JS42 helix-turn-helix domain-containing protein YP_987151.1 3108295 D 232721 CDS YP_987152.1 121595256 4671430 3108818..3109861 1 NC_008782.1 KEGG: xac:XAC2189 hypothetical protein; hypothetical protein 3109861 4671430 Ajs_2938 Acidovorax sp. JS42 hypothetical protein YP_987152.1 3108818 D 232721 CDS YP_987153.1 121595257 4671669 complement(3110204..3110518) 1 NC_008782.1 PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein; hypothetical protein 3110518 4671669 Ajs_2939 Acidovorax sp. JS42 hypothetical protein YP_987153.1 3110204 R 232721 CDS YP_987154.1 121595258 4671599 complement(3111327..3112142) 1 NC_008782.1 KEGG: sfr:Sfri_1670 hypothetical protein; hypothetical protein 3112142 4671599 Ajs_2941 Acidovorax sp. JS42 hypothetical protein YP_987154.1 3111327 R 232721 CDS YP_987155.1 121595259 4671210 complement(3112382..3112591) 1 NC_008782.1 KEGG: rme:Rmet_3032 hypothetical protein; hypothetical protein 3112591 4671210 Ajs_2942 Acidovorax sp. JS42 hypothetical protein YP_987155.1 3112382 R 232721 CDS YP_987156.1 121595260 4670555 complement(3112655..3114706) 1 NC_008782.1 PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease; nuclease 3114706 4670555 Ajs_2943 Acidovorax sp. JS42 nuclease YP_987156.1 3112655 R 232721 CDS YP_987157.1 121595261 4670922 complement(3114781..3115608) 1 NC_008782.1 PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932; hypothetical protein 3115608 4670922 Ajs_2944 Acidovorax sp. JS42 hypothetical protein YP_987157.1 3114781 R 232721 CDS YP_987158.1 121595262 4670735 complement(3116240..3116488) 1 NC_008782.1 hypothetical protein 3116488 4670735 Ajs_2946 Acidovorax sp. JS42 hypothetical protein YP_987158.1 3116240 R 232721 CDS YP_987159.1 121595263 4670707 3116573..3117457 1 NC_008782.1 KEGG: psb:Psyr_1555 cobyrinic acid a,c-diamide synthase; chromosome partitioning ATPase 3117457 4670707 Ajs_2947 Acidovorax sp. JS42 chromosome partitioning ATPase YP_987159.1 3116573 D 232721 CDS YP_987160.1 121595264 4670602 3117454..3117897 1 NC_008782.1 hypothetical protein 3117897 4670602 Ajs_2948 Acidovorax sp. JS42 hypothetical protein YP_987160.1 3117454 D 232721 CDS YP_987161.1 121595265 4670635 3118086..3118799 1 NC_008782.1 KEGG: dar:Daro_2335 hypothetical protein; hypothetical protein 3118799 4670635 Ajs_2949 Acidovorax sp. JS42 hypothetical protein YP_987161.1 3118086 D 232721 CDS YP_987162.1 121595266 4670661 3118990..3120165 1 NC_008782.1 KEGG: hch:HCH_07043 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 3120165 4670661 Ajs_2950 Acidovorax sp. JS42 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase YP_987162.1 3118990 D 232721 CDS YP_987163.1 121595267 4670698 3120162..3120362 1 NC_008782.1 hypothetical protein 3120362 4670698 Ajs_2951 Acidovorax sp. JS42 hypothetical protein YP_987163.1 3120162 D 232721 CDS YP_987164.1 121595268 4670511 3120378..3122429 1 NC_008782.1 KEGG: bcz:BCZK0828 conserved hypothetical protein; possible ATPase; hypothetical protein 3122429 4670511 Ajs_2952 Acidovorax sp. JS42 hypothetical protein YP_987164.1 3120378 D 232721 CDS YP_987165.1 121595269 4670753 3122618..3123988 1 NC_008782.1 KEGG: hch:HCH_07046 hypothetical protein; hypothetical protein 3123988 4670753 Ajs_2953 Acidovorax sp. JS42 hypothetical protein YP_987165.1 3122618 D 232721 CDS YP_987166.1 121595270 4670837 3123985..3124947 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3124947 4670837 Ajs_2954 Acidovorax sp. JS42 transposase, IS4 family protein YP_987166.1 3123985 D 232721 CDS YP_987167.1 121595271 4670896 3125159..3125647 1 NC_008782.1 hypothetical protein 3125647 4670896 Ajs_2955 Acidovorax sp. JS42 hypothetical protein YP_987167.1 3125159 D 232721 CDS YP_987168.1 121595272 4670936 3125647..3126864 1 NC_008782.1 KEGG: rde:RD1_0808 hypothetical protein; hypothetical protein 3126864 4670936 Ajs_2956 Acidovorax sp. JS42 hypothetical protein YP_987168.1 3125647 D 232721 CDS YP_987169.1 121595273 4670987 complement(3127020..3127334) 1 NC_008782.1 KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator 3127334 4670987 Ajs_2957 Acidovorax sp. JS42 putative transcriptional regulator YP_987169.1 3127020 R 232721 CDS YP_987170.1 121595274 4671553 complement(3127312..3127662) 1 NC_008782.1 PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein 3127662 4671553 Ajs_2958 Acidovorax sp. JS42 hypothetical protein YP_987170.1 3127312 R 232721 CDS YP_987171.1 121595275 4671584 complement(3127686..3129020) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase; phage integrase family protein 3129020 4671584 Ajs_2959 Acidovorax sp. JS42 phage integrase family protein YP_987171.1 3127686 R 232721 CDS YP_987172.1 121595276 4671414 3129524..3129895 1 NC_008782.1 hypothetical protein 3129895 4671414 Ajs_2960 Acidovorax sp. JS42 hypothetical protein YP_987172.1 3129524 D 232721 CDS YP_987173.1 121595277 4671617 3129919..3130179 1 NC_008782.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3130179 infA 4671617 infA Acidovorax sp. JS42 translation initiation factor IF-1 YP_987173.1 3129919 D 232721 CDS YP_987174.1 121595278 4671466 3130256..3130564 1 NC_008782.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 3130564 4671466 Ajs_2962 Acidovorax sp. JS42 RNP-1 like RNA-binding protein YP_987174.1 3130256 D 232721 CDS YP_987175.1 121595279 4671670 complement(3130811..3131299) 1 NC_008782.1 KEGG: cvi:CV3228 hypothetical protein; hypothetical protein 3131299 4671670 Ajs_2963 Acidovorax sp. JS42 hypothetical protein YP_987175.1 3130811 R 232721 CDS YP_987176.1 121595280 4671692 complement(3131303..3132085) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV3227 hypothetical protein; short-chain dehydrogenase/reductase SDR 3132085 4671692 Ajs_2964 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_987176.1 3131303 R 232721 CDS YP_987177.1 121595281 4671769 complement(3132097..3132633) 1 NC_008782.1 KEGG: dar:Daro_0495 lipoprotein, putative; putative lipoprotein 3132633 4671769 Ajs_2965 Acidovorax sp. JS42 putative lipoprotein YP_987177.1 3132097 R 232721 CDS YP_987178.1 121595282 4672096 complement(3132630..3133949) 1 NC_008782.1 KEGG: dar:Daro_0494 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3133949 4672096 Ajs_2966 Acidovorax sp. JS42 major facilitator superfamily transporter YP_987178.1 3132630 R 232721 CDS YP_987179.1 121595283 4672145 complement(3133946..3134404) 1 NC_008782.1 KEGG: dar:Daro_0493 hypothetical protein; hypothetical protein 3134404 4672145 Ajs_2967 Acidovorax sp. JS42 hypothetical protein YP_987179.1 3133946 R 232721 CDS YP_987180.1 121595284 4672167 complement(3134570..3136288) 1 NC_008782.1 PFAM: chemotaxis sensory transducer; KEGG: reu:Reut_C6240 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3136288 4672167 Ajs_2968 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987180.1 3134570 R 232721 CDS YP_987181.1 121595285 4671998 complement(3136322..3137542) 1 NC_008782.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 3137542 4671998 Ajs_2969 Acidovorax sp. JS42 cyclopropane-fatty-acyl-phospholipid synthase YP_987181.1 3136322 R 232721 CDS YP_987182.1 121595286 4672011 complement(3137545..3138363) 1 NC_008782.1 PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein; hypothetical protein 3138363 4672011 Ajs_2970 Acidovorax sp. JS42 hypothetical protein YP_987182.1 3137545 R 232721 CDS YP_987183.1 121595287 4672284 complement(3138360..3139664) 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3139664 4672284 Ajs_2971 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_987183.1 3138360 R 232721 CDS YP_987184.1 121595288 4672031 3139833..3140783 1 NC_008782.1 PFAM: regulatory protein, MerR; cobalamin B12-binding domain protein; KEGG: reu:Reut_C6238 regulatory protein, MerR; MerR family transcriptional regulator 3140783 4672031 Ajs_2972 Acidovorax sp. JS42 MerR family transcriptional regulator YP_987184.1 3139833 D 232721 CDS YP_987185.1 121595289 4672788 3140809..3141417 1 NC_008782.1 PFAM: Lipocalin family protein; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin; Lipocalin family protein 3141417 4672788 Ajs_2973 Acidovorax sp. JS42 Lipocalin family protein YP_987185.1 3140809 D 232721 CDS YP_987186.1 121595290 4672812 complement(3141548..3141877) 1 NC_008782.1 hypothetical protein 3141877 4672812 Ajs_2974 Acidovorax sp. JS42 hypothetical protein YP_987186.1 3141548 R 232721 CDS YP_987187.1 121595291 4672858 complement(3142351..3142977) 1 NC_008782.1 hypothetical protein 3142977 4672858 Ajs_2975 Acidovorax sp. JS42 hypothetical protein YP_987187.1 3142351 R 232721 CDS YP_987188.1 121595292 4672902 3143202..3143576 1 NC_008782.1 PFAM: LrgA family protein; KEGG: dar:Daro_3105 LrgA; LrgA family protein 3143576 4672902 Ajs_2976 Acidovorax sp. JS42 LrgA family protein YP_987188.1 3143202 D 232721 CDS YP_987189.1 121595293 4672941 3143573..3144298 1 NC_008782.1 PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein; LrgB family protein 3144298 4672941 Ajs_2977 Acidovorax sp. JS42 LrgB family protein YP_987189.1 3143573 D 232721 CDS YP_987190.1 121595294 4673029 complement(3144320..3145273) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_4071 transcriptional regulator, LysR family; LysR family transcriptional regulator 3145273 4673029 Ajs_2978 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987190.1 3144320 R 232721 CDS YP_987191.1 121595295 4673121 3145438..3146634 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aci:ACIAD1660 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3146634 4673121 Ajs_2979 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987191.1 3145438 D 232721 CDS YP_987192.1 121595296 4673401 3146787..3148043 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_4069 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3148043 4673401 Ajs_2980 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_987192.1 3146787 D 232721 CDS YP_987193.1 121595297 4673406 3148134..3149102 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065; hypothetical protein 3149102 4673406 Ajs_2981 Acidovorax sp. JS42 hypothetical protein YP_987193.1 3148134 D 232721 CDS YP_987194.1 121595298 4673448 complement(3149119..3150081) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 3150081 4673448 Ajs_2982 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987194.1 3149119 R 232721 CDS YP_987195.1 121595299 4673531 3151450..3152049 1 NC_008782.1 KEGG: dme:Dmel_CG2839 CG2839; hypothetical protein 3152049 4673531 Ajs_2984 Acidovorax sp. JS42 hypothetical protein YP_987195.1 3151450 D 232721 CDS YP_987196.1 121595300 4673587 3152059..3152706 1 NC_008782.1 KEGG: rso:RSc0392 probable proline-rich transmembrane protein; hypothetical protein 3152706 4673587 Ajs_2985 Acidovorax sp. JS42 hypothetical protein YP_987196.1 3152059 D 232721 CDS YP_987197.1 121595301 4673613 complement(3152703..3153659) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3153659 4673613 Ajs_2986 Acidovorax sp. JS42 NAD-dependent epimerase/dehydratase YP_987197.1 3152703 R 232721 CDS YP_987198.1 121595302 4673652 3153705..3154757 1 NC_008782.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 3154757 4673652 Ajs_2987 Acidovorax sp. JS42 CDP-6-deoxy-delta-3,4-glucoseen reductase YP_987198.1 3153705 D 232721 CDS YP_987199.1 121595303 4673664 complement(3154944..3155294) 1 NC_008782.1 PFAM: protein of unknown function DUF326; KEGG: tbd:Tbd_2742 hypothetical protein; hypothetical protein 3155294 4673664 Ajs_2988 Acidovorax sp. JS42 hypothetical protein YP_987199.1 3154944 R 232721 CDS YP_987200.1 121595304 4673673 3155427..3156398 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3300 uncharacterized protein UPF0065; hypothetical protein 3156398 4673673 Ajs_2989 Acidovorax sp. JS42 hypothetical protein YP_987200.1 3155427 D 232721 CDS YP_987201.1 121595305 4673729 complement(3156664..3157167) 1 NC_008782.1 KEGG: bpa:BPP3629 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3157167 4673729 Ajs_2990 Acidovorax sp. JS42 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_987201.1 3156664 R 232721 CDS YP_987202.1 121595306 4674246 complement(3157179..3158774) 1 NC_008782.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rfr:Rfer_2509 poly(A) polymerase; poly(A) polymerase 3158774 4674246 Ajs_2991 Acidovorax sp. JS42 poly(A) polymerase YP_987202.1 3157179 R 232721 CDS YP_987203.1 121595307 4674013 complement(3158771..3159472) 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rfr:Rfer_2510 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase 3159472 4674013 Ajs_2992 Acidovorax sp. JS42 HAD family hydrolase YP_987203.1 3158771 R 232721 CDS YP_987204.1 121595308 4674015 complement(3159523..3160215) 1 NC_008782.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: rfr:Rfer_2511 chromosomal replication initiator, DnaA; chromosomal replication initiator DnaA 3160215 4674015 Ajs_2993 Acidovorax sp. JS42 chromosomal replication initiator DnaA YP_987204.1 3159523 R 232721 CDS YP_987205.1 121595309 4674395 3160552..3161601 1 NC_008782.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3161601 4674395 Ajs_2994 Acidovorax sp. JS42 phosphoribosylaminoimidazole synthetase YP_987205.1 3160552 D 232721 CDS YP_987206.1 121595310 4674546 3161620..3162699 1 NC_008782.1 KEGG: rme:Rmet_5901 hypothetical protein; hypothetical protein 3162699 4674546 Ajs_2995 Acidovorax sp. JS42 hypothetical protein YP_987206.1 3161620 D 232721 CDS YP_987207.1 121595311 4674652 3162923..3163315 1 NC_008782.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA; UspA domain-containing protein 3163315 4674652 Ajs_2996 Acidovorax sp. JS42 UspA domain-containing protein YP_987207.1 3162923 D 232721 CDS YP_987208.1 121595312 4674035 complement(3163405..3164319) 1 NC_008782.1 PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344; hypothetical protein 3164319 4674035 Ajs_2997 Acidovorax sp. JS42 hypothetical protein YP_987208.1 3163405 R 232721 CDS YP_987209.1 121595313 4674016 complement(3164427..3165275) 1 NC_008782.1 KEGG: rfr:Rfer_2526 hypothetical protein; hypothetical protein 3165275 4674016 Ajs_2998 Acidovorax sp. JS42 hypothetical protein YP_987209.1 3164427 R 232721 CDS YP_987210.1 121595314 4674024 complement(3165289..3166887) 1 NC_008782.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN 3166887 4674024 Ajs_2999 Acidovorax sp. JS42 integral membrane protein MviN YP_987210.1 3165289 R 232721 CDS YP_987211.1 121595315 4673979 3166959..3167261 1 NC_008782.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3167261 rpsT 4673979 rpsT Acidovorax sp. JS42 30S ribosomal protein S20 YP_987211.1 3166959 D 232721 CDS YP_987212.1 121595316 4673869 complement(3167440..3167754) 1 NC_008782.1 KEGG: pol:Bpro_3571 hypothetical protein; hypothetical protein 3167754 4673869 Ajs_3001 Acidovorax sp. JS42 hypothetical protein YP_987212.1 3167440 R 232721 CDS YP_987213.1 121595317 4673842 3167989..3169185 1 NC_008782.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3169185 4673842 Ajs_3002 Acidovorax sp. JS42 acetylornithine aminotransferase YP_987213.1 3167989 D 232721 CDS YP_987214.1 121595318 4673810 3169202..3170119 1 NC_008782.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 3170119 4673810 Ajs_3003 Acidovorax sp. JS42 ornithine carbamoyltransferase YP_987214.1 3169202 D 232721 CDS YP_987215.1 121595319 4673789 3170457..3170801 1 NC_008782.1 PFAM: protein of unknown function UPF0153; KEGG: pfl:PFL_1305 conserved hypothetical protein; hypothetical protein 3170801 4673789 Ajs_3004 Acidovorax sp. JS42 hypothetical protein YP_987215.1 3170457 D 232721 CDS YP_987216.1 121595320 4673779 complement(3170932..3171129) 1 NC_008782.1 hypothetical protein 3171129 4673779 Ajs_3005 Acidovorax sp. JS42 hypothetical protein YP_987216.1 3170932 R 232721 CDS YP_987217.1 121595321 4673695 3171485..3174400 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 3174400 4673695 Ajs_3007 Acidovorax sp. JS42 transposase Tn3 family protein YP_987217.1 3171485 D 232721 CDS YP_987218.1 121595322 4673485 complement(3174517..3174876) 1 NC_008782.1 KEGG: cvi:CV3035 probable transposase; putative transposase 3174876 4673485 Ajs_3008 Acidovorax sp. JS42 putative transposase YP_987218.1 3174517 R 232721 CDS YP_987219.1 121595323 4673245 complement(3174983..3175786) 1 NC_008782.1 PFAM: PHP C-terminal domain protein; KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein; phosphotransferase domain-containing protein 3175786 4673245 Ajs_3009 Acidovorax sp. JS42 phosphotransferase domain-containing protein YP_987219.1 3174983 R 232721 CDS YP_987220.1 121595324 4673193 complement(3175779..3176927) 1 NC_008782.1 KEGG: noc:Noc_1499 hypothetical protein; hypothetical protein 3176927 4673193 Ajs_3010 Acidovorax sp. JS42 hypothetical protein YP_987220.1 3175779 R 232721 CDS YP_987221.1 121595325 4673949 complement(3176984..3177793) 1 NC_008782.1 KEGG: bpm:BURPS1710b_1566 hypothetical protein; hypothetical protein 3177793 4673949 Ajs_3011 Acidovorax sp. JS42 hypothetical protein YP_987221.1 3176984 R 232721 CDS YP_987222.1 121595326 4674583 complement(3178522..3180915) 1 NC_008782.1 PFAM: lipopolysaccharide biosynthesis; KEGG: eba:ebA6797 exopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis 3180915 4674583 Ajs_3012 Acidovorax sp. JS42 lipopolysaccharide biosynthesis YP_987222.1 3178522 R 232721 CDS YP_987223.1 121595327 4673099 complement(3180966..3181778) 1 NC_008782.1 PFAM: polysaccharide export protein; KEGG: noc:Noc_1525 polysaccharide export protein; polysaccharide export protein 3181778 4673099 Ajs_3013 Acidovorax sp. JS42 polysaccharide export protein YP_987223.1 3180966 R 232721 CDS YP_987224.1 121595328 4673196 3182055..3183350 1 NC_008782.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein; UDP-glucose/GDP-mannose dehydrogenase 3183350 4673196 Ajs_3014 Acidovorax sp. JS42 UDP-glucose/GDP-mannose dehydrogenase YP_987224.1 3182055 D 232721 CDS YP_987225.1 121595329 4673075 3183384..3184367 1 NC_008782.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB; oxidoreductase domain-containing protein 3184367 4673075 Ajs_3015 Acidovorax sp. JS42 oxidoreductase domain-containing protein YP_987225.1 3183384 D 232721 CDS YP_987226.1 121595330 4673038 3184436..3185083 1 NC_008782.1 KEGG: bbr:BB0154 probable acetyltransferase; putative acetyltransferase 3185083 4673038 Ajs_3016 Acidovorax sp. JS42 putative acetyltransferase YP_987226.1 3184436 D 232721 CDS YP_987227.1 121595331 4673034 3185087..3185356 1 NC_008782.1 hypothetical protein 3185356 4673034 Ajs_3017 Acidovorax sp. JS42 hypothetical protein YP_987227.1 3185087 D 232721 CDS YP_987228.1 121595332 4672848 3185353..3186909 1 NC_008782.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; aminotransferase class-III; KEGG: msu:MS1498 WecE protein; DegT/DnrJ/EryC1/StrS aminotransferase 3186909 4672848 Ajs_3018 Acidovorax sp. JS42 DegT/DnrJ/EryC1/StrS aminotransferase YP_987228.1 3185353 D 232721 CDS YP_987229.1 121595333 4672796 3186923..3187120 1 NC_008782.1 KEGG: mac:MA2370 ATP-dependent DNA helicase; putative transcriptional regulator 3187120 4672796 Ajs_3019 Acidovorax sp. JS42 putative transcriptional regulator YP_987229.1 3186923 D 232721 CDS YP_987230.1 121595334 4672486 3187117..3187566 1 NC_008782.1 KEGG: syn:sll1543 hypothetical protein; hypothetical protein 3187566 4672486 Ajs_3020 Acidovorax sp. JS42 hypothetical protein YP_987230.1 3187117 D 232721 CDS YP_987231.1 121595335 4672531 3187556..3187768 1 NC_008782.1 KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein 3187768 4672531 Ajs_3021 Acidovorax sp. JS42 hypothetical protein YP_987231.1 3187556 D 232721 CDS YP_987232.1 121595336 4672452 3188053..3189453 1 NC_008782.1 KEGG: mhu:Mhun_2377 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3189453 4672452 Ajs_3022 Acidovorax sp. JS42 polysaccharide biosynthesis protein YP_987232.1 3188053 D 232721 CDS YP_987233.1 121595337 4672042 3189463..3190620 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: mma:MM1178 glycosyltransferase; group 1 glycosyl transferase 3190620 4672042 Ajs_3023 Acidovorax sp. JS42 group 1 glycosyl transferase YP_987233.1 3189463 D 232721 CDS YP_987234.1 121595338 4672410 3190614..3191858 1 NC_008782.1 KEGG: plt:Plut_1854 hypothetical protein; hypothetical protein 3191858 4672410 Ajs_3024 Acidovorax sp. JS42 hypothetical protein YP_987234.1 3190614 D 232721 CDS YP_987235.1 121595339 4672326 3191845..3193014 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: pfl:PFL_5103 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3193014 4672326 Ajs_3025 Acidovorax sp. JS42 group 1 glycosyl transferase YP_987235.1 3191845 D 232721 CDS YP_987236.1 121595340 4672189 3193004..3194056 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; KEGG: eba:ebA5885 hypothetical protein; polysaccharide biosynthesis protein CapD 3194056 4672189 Ajs_3026 Acidovorax sp. JS42 polysaccharide biosynthesis protein CapD YP_987236.1 3193004 D 232721 CDS YP_987237.1 121595341 4671885 3194323..3194538 1 NC_008782.1 KEGG: net:Neut_1360 conserved hypothetical protein; hypothetical protein 3194538 4671885 Ajs_3027 Acidovorax sp. JS42 hypothetical protein YP_987237.1 3194323 D 232721 CDS YP_987238.1 121595342 4671936 3194542..3194970 1 NC_008782.1 TIGRFAM: PIN domain family protein; KEGG: net:Neut_1359 PIN domain family protein; PilT domain-containing protein 3194970 4671936 Ajs_3028 Acidovorax sp. JS42 PilT domain-containing protein YP_987238.1 3194542 D 232721 CDS YP_987239.1 121595343 4674257 3195058..3196209 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA5887 probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis; NAD-dependent epimerase/dehydratase 3196209 4674257 Ajs_3029 Acidovorax sp. JS42 NAD-dependent epimerase/dehydratase YP_987239.1 3195058 D 232721 CDS YP_987240.1 121595344 4671821 3196206..3197426 1 NC_008782.1 PFAM: SMC domain protein; KEGG: cch:Cag_0257 ATPase; SMC domain-containing protein 3197426 4671821 Ajs_3030 Acidovorax sp. JS42 SMC domain-containing protein YP_987240.1 3196206 D 232721 CDS YP_987241.1 121595345 4671814 3197423..3197920 1 NC_008782.1 KEGG: cch:Cag_0256 hypothetical protein; hypothetical protein 3197920 4671814 Ajs_3031 Acidovorax sp. JS42 hypothetical protein YP_987241.1 3197423 D 232721 CDS YP_987242.1 121595346 4671804 3197928..3199070 1 NC_008782.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eba:ebA5890 predicted UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3199070 4671804 Ajs_3032 Acidovorax sp. JS42 UDP-N-acetylglucosamine 2-epimerase YP_987242.1 3197928 D 232721 CDS YP_987243.1 121595347 4671772 3199090..3200322 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: eba:ebA5893 predicted glycosyltransferase; group 1 glycosyl transferase 3200322 4671772 Ajs_3033 Acidovorax sp. JS42 group 1 glycosyl transferase YP_987243.1 3199090 D 232721 CDS YP_987244.1 121595348 4671288 3200408..3201001 1 NC_008782.1 PFAM: sugar transferase; KEGG: rme:Rmet_2726 sugar transferase; undecaprenyl-phosphate galactose phosphotransferase 3201001 4671288 Ajs_3034 Acidovorax sp. JS42 undecaprenyl-phosphate galactose phosphotransferase YP_987244.1 3200408 D 232721 CDS YP_987245.1 121595349 4671478 3200998..3201663 1 NC_008782.1 KEGG: rso:RS02341 putative acetyl transferase protein; putative acetyl transferase protein 3201663 4671478 Ajs_3035 Acidovorax sp. JS42 putative acetyl transferase protein YP_987245.1 3200998 D 232721 CDS YP_987246.1 121595350 4671920 3201678..3202088 1 NC_008782.1 PFAM: VanZ family protein; VanZ family protein 3202088 4671920 Ajs_3036 Acidovorax sp. JS42 VanZ family protein YP_987246.1 3201678 D 232721 CDS YP_987247.1 121595351 4671346 3202109..3203335 1 NC_008782.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3203335 4671346 Ajs_3037 Acidovorax sp. JS42 DegT/DnrJ/EryC1/StrS aminotransferase YP_987247.1 3202109 D 232721 CDS YP_987248.1 121595352 4671155 complement(3205648..3206673) 1 NC_008782.1 KEGG: noc:Noc_1503 probable binding-protein-dependent transport system protein; putative-binding-protein-dependent transport system protein 3206673 4671155 Ajs_3039 Acidovorax sp. JS42 putative-binding-protein-dependent transport system protein YP_987248.1 3205648 R 232721 CDS YP_987249.1 121595353 4671120 3207347..3207658 1 NC_008782.1 hypothetical protein 3207658 4671120 Ajs_3040 Acidovorax sp. JS42 hypothetical protein YP_987249.1 3207347 D 232721 CDS YP_987250.1 121595354 4671110 complement(3207833..3208048) 1 NC_008782.1 hypothetical protein 3208048 4671110 Ajs_3041 Acidovorax sp. JS42 hypothetical protein YP_987250.1 3207833 R 232721 CDS YP_987251.1 121595355 4671090 complement(3208143..3208745) 1 NC_008782.1 PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein; hypothetical protein 3208745 4671090 Ajs_3042 Acidovorax sp. JS42 hypothetical protein YP_987251.1 3208143 R 232721 CDS YP_987252.1 121595356 4671075 3208859..3210085 1 NC_008782.1 PFAM: Radical SAM N-terminal domain protein; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein 3210085 4671075 Ajs_3043 Acidovorax sp. JS42 radical SAM domain-containing protein YP_987252.1 3208859 D 232721 CDS YP_987253.1 121595357 4671064 3210200..3213115 1 NC_008782.1 PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 3213115 4671064 Ajs_3044 Acidovorax sp. JS42 transposase Tn3 family protein YP_987253.1 3210200 D 232721 CDS YP_987254.1 121595358 4671056 3213209..3213571 1 NC_008782.1 hypothetical protein 3213571 4671056 Ajs_3045 Acidovorax sp. JS42 hypothetical protein YP_987254.1 3213209 D 232721 CDS YP_987255.1 121595359 4670988 complement(3214481..3215617) 1 NC_008782.1 SMART: regulatory protein, LuxR; KEGG: bam:Bamb_3845 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3215617 4670988 Ajs_3046 Acidovorax sp. JS42 LuxR family transcriptional regulator YP_987255.1 3214481 R 232721 CDS YP_987256.1 121595360 4670780 complement(3216346..3217524) 1 NC_008782.1 KEGG: xcb:XC_2079 YeeC-like protein; YeeC-like protein 3217524 4670780 Ajs_3048 Acidovorax sp. JS42 YeeC-like protein YP_987256.1 3216346 R 232721 CDS YP_987257.1 121595361 4670578 3218129..3219667 1 NC_008782.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 3219667 4670578 Ajs_3050 Acidovorax sp. JS42 integrase catalytic subunit YP_987257.1 3218129 D 232721 CDS YP_987258.1 121595362 4670598 complement(3219858..3220658) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 3220658 4670598 Ajs_3051 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_987258.1 3219858 R 232721 CDS YP_987259.1 121595363 4670599 complement(3220651..3222165) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 3222165 4670599 Ajs_3052 Acidovorax sp. JS42 integrase catalytic subunit YP_987259.1 3220651 R 232721 CDS YP_987260.1 121595364 4670611 complement(3222494..3222991) 1 NC_008782.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mca:MCA1387 arsenate reductase, putative; protein tyrosine phosphatase 3222991 4670611 Ajs_3054 Acidovorax sp. JS42 protein tyrosine phosphatase YP_987260.1 3222494 R 232721 CDS YP_987261.1 121595365 4670655 complement(3223015..3223335) 1 NC_008782.1 SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein; ArsR family transcriptional regulator 3223335 4670655 Ajs_3055 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_987261.1 3223015 R 232721 CDS YP_987262.1 121595366 4670668 complement(3223430..3224377) 1 NC_008782.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: mxa:MXAN_1057 bacterial lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 3224377 4670668 Ajs_3056 Acidovorax sp. JS42 lipid A biosynthesis acyltransferase YP_987262.1 3223430 R 232721 CDS YP_987263.1 121595367 4670686 complement(3224439..3226154) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1174 ABC transporter related; ABC transporter-like protein 3226154 4670686 Ajs_3057 Acidovorax sp. JS42 ABC transporter-like protein YP_987263.1 3224439 R 232721 CDS YP_987264.1 121595368 4670708 complement(3226208..3227191) 1 NC_008782.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: nmu:Nmul_A0405 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit 3227191 4670708 Ajs_3058 Acidovorax sp. JS42 diacylglycerol kinase catalytic subunit YP_987264.1 3226208 R 232721 CDS YP_987265.1 121595369 4670728 complement(3227227..3228342) 1 NC_008782.1 PFAM: fatty acid desaturase; KEGG: rba:RB5740 hypothetical protein-transmembrane prediction; fatty acid desaturase 3228342 4670728 Ajs_3059 Acidovorax sp. JS42 fatty acid desaturase YP_987265.1 3227227 R 232721 CDS YP_987266.1 121595370 4670730 complement(3228440..3229213) 1 NC_008782.1 KEGG: rfr:Rfer_0612 hypothetical protein; hypothetical protein 3229213 4670730 Ajs_3060 Acidovorax sp. JS42 hypothetical protein YP_987266.1 3228440 R 232721 CDS YP_987267.1 121595371 4670755 complement(3229244..3230176) 1 NC_008782.1 KEGG: gox:GOX2055 hypothetical protein; hypothetical protein 3230176 4670755 Ajs_3061 Acidovorax sp. JS42 hypothetical protein YP_987267.1 3229244 R 232721 CDS YP_987268.1 121595372 4670757 complement(3230173..3231330) 1 NC_008782.1 KEGG: ccr:CC1159 hypothetical protein; hypothetical protein 3231330 4670757 Ajs_3062 Acidovorax sp. JS42 hypothetical protein YP_987268.1 3230173 R 232721 CDS YP_987269.1 121595373 4670816 3231413..3232336 1 NC_008782.1 PFAM: metallophosphoesterase; KEGG: gox:GOX2053 hypothetical protein; metallophosphoesterase 3232336 4670816 Ajs_3063 Acidovorax sp. JS42 metallophosphoesterase YP_987269.1 3231413 D 232721 CDS YP_987270.1 121595374 4670870 3232323..3232814 1 NC_008782.1 PFAM: histidine triad (HIT) protein; KEGG: ccr:CC1157 hypothetical protein; histidine triad (HIT) protein 3232814 4670870 Ajs_3064 Acidovorax sp. JS42 histidine triad (HIT) protein YP_987270.1 3232323 D 232721 CDS YP_987271.1 121595375 4670899 3232834..3234024 1 NC_008782.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1156 hypothetical protein; permease 3234024 4670899 Ajs_3065 Acidovorax sp. JS42 permease YP_987271.1 3232834 D 232721 CDS YP_987272.1 121595376 4670916 3234021..3235088 1 NC_008782.1 PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1155 hypothetical protein; permease 3235088 4670916 Ajs_3066 Acidovorax sp. JS42 permease YP_987272.1 3234021 D 232721 CDS YP_987273.1 121595377 4670966 3235085..3236293 1 NC_008782.1 KEGG: hne:HNE_1581 putative phosphatidyltransferase; putative phosphatidyltransferase 3236293 4670966 Ajs_3067 Acidovorax sp. JS42 putative phosphatidyltransferase YP_987273.1 3235085 D 232721 CDS YP_987274.1 121595378 4670967 3236300..3237427 1 NC_008782.1 KEGG: ccr:CC1154 hypothetical protein; hypothetical protein 3237427 4670967 Ajs_3068 Acidovorax sp. JS42 hypothetical protein YP_987274.1 3236300 D 232721 CDS YP_987275.1 121595379 4671043 3237429..3238235 1 NC_008782.1 KEGG: ccr:CC1153 hypothetical protein; hypothetical protein 3238235 4671043 Ajs_3069 Acidovorax sp. JS42 hypothetical protein YP_987275.1 3237429 D 232721 CDS YP_987276.1 121595380 4671050 complement(3238221..3239012) 1 NC_008782.1 PFAM: Nucleotidyl transferase; KEGG: ccr:CC1152 nucleotidyltransferase family protein; nucleotidyl transferase 3239012 4671050 Ajs_3070 Acidovorax sp. JS42 nucleotidyl transferase YP_987276.1 3238221 R 232721 CDS YP_987277.1 121595381 4670562 complement(3239076..3239732) 1 NC_008782.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: bte:BTH_II2340 4-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase 3239732 4670562 Ajs_3071 Acidovorax sp. JS42 4'-phosphopantetheinyl transferase YP_987277.1 3239076 R 232721 CDS YP_987278.1 121595382 4671142 3239796..3241109 1 NC_008782.1 PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein; cytochrome P450 3241109 4671142 Ajs_3072 Acidovorax sp. JS42 cytochrome P450 YP_987278.1 3239796 D 232721 CDS YP_987279.1 121595383 4670584 3241129..3243090 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sdn:Sden_3532 amino acid adenylation; AMP-dependent synthetase and ligase 3243090 4670584 Ajs_3073 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_987279.1 3241129 D 232721 CDS YP_987280.1 121595384 4671195 3243316..3245127 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A0231 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3245127 4671195 Ajs_3074 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_987280.1 3243316 D 232721 CDS YP_987281.1 121595385 4671283 3245147..3245395 1 NC_008782.1 KEGG: gbe:GbCGDNIH1_0240 acyl carrier protein; acyl carrier protein 3245395 4671283 Ajs_3075 Acidovorax sp. JS42 acyl carrier protein YP_987281.1 3245147 D 232721 CDS YP_987282.1 121595386 4671200 3245392..3246573 1 NC_008782.1 PFAM: aminotransferase, class V; aminotransferase, class I and II; aminotransferase class-III; KEGG: neu:NE1655 aminotransferase class-I; serine palmitoyltransferase 3246573 4671200 Ajs_3076 Acidovorax sp. JS42 serine palmitoyltransferase YP_987282.1 3245392 D 232721 CDS YP_987283.1 121595387 4671307 complement(3246578..3247498) 1 NC_008782.1 hypothetical protein 3247498 4671307 Ajs_3077 Acidovorax sp. JS42 hypothetical protein YP_987283.1 3246578 R 232721 CDS YP_987284.1 121595388 4671242 3247671..3248555 1 NC_008782.1 KEGG: syf:Synpcc7942_2287 hypothetical protein; hypothetical protein 3248555 4671242 Ajs_3078 Acidovorax sp. JS42 hypothetical protein YP_987284.1 3247671 D 232721 CDS YP_987285.1 121595389 4671884 complement(3248581..3249660) 1 NC_008782.1 KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase-like protein 3249660 4671884 Ajs_3079 Acidovorax sp. JS42 nucleoside-diphosphate-sugar epimerase-like protein YP_987285.1 3248581 R 232721 CDS YP_987286.1 121595390 4671937 complement(3249660..3250646) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: gbe:GbCGDNIH1_0241 NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein; NAD-dependent epimerase/dehydratase 3250646 4671937 Ajs_3080 Acidovorax sp. JS42 NAD-dependent epimerase/dehydratase YP_987286.1 3249660 R 232721 CDS YP_987287.1 121595391 4671532 3250745..3251047 1 NC_008782.1 KEGG: ade:Adeh_3627 HNH endonuclease; hypothetical protein 3251047 4671532 Ajs_3081 Acidovorax sp. JS42 hypothetical protein YP_987287.1 3250745 D 232721 CDS YP_987288.1 121595392 4671544 complement(3251066..3251578) 1 NC_008782.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bxe:Bxe_A1491 putative cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase 3251578 4671544 Ajs_3082 Acidovorax sp. JS42 CMP/dCMP deaminase YP_987288.1 3251066 R 232721 CDS YP_987289.1 121595393 4671271 complement(3251642..3251971) 1 NC_008782.1 hypothetical protein 3251971 4671271 Ajs_3083 Acidovorax sp. JS42 hypothetical protein YP_987289.1 3251642 R 232721 CDS YP_987290.1 121595394 4671597 complement(3254996..3255760) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 3255760 4671597 Ajs_3085 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_987290.1 3254996 R 232721 CDS YP_987291.1 121595395 4671618 complement(3255757..3257352) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 3257352 4671618 Ajs_3086 Acidovorax sp. JS42 integrase catalytic subunit YP_987291.1 3255757 R 232721 CDS YP_987292.1 121595396 4671643 3257465..3259048 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_0990 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3259048 4671643 Ajs_3087 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987292.1 3257465 D 232721 CDS YP_987293.1 121595397 4671684 complement(3259015..3259920) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1092 probable transcriptional regulatory DNA-binding transcription regulator protein; LysR family transcriptional regulator 3259920 4671684 Ajs_3088 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987293.1 3259015 R 232721 CDS YP_987294.1 121595398 4671697 3260037..3261023 1 NC_008782.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit 3261023 4671697 Ajs_3089 Acidovorax sp. JS42 oxidoreductase FAD-binding subunit YP_987294.1 3260037 D 232721 CDS YP_987295.1 121595399 4671700 3261069..3261629 1 NC_008782.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3261629 4671700 Ajs_3090 Acidovorax sp. JS42 Rieske (2Fe-2S) domain-containing protein YP_987295.1 3261069 D 232721 CDS YP_987296.1 121595400 4671730 3261670..3261984 1 NC_008782.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0985 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3261984 4671730 Ajs_3091 Acidovorax sp. JS42 Rieske (2Fe-2S) domain-containing protein YP_987296.1 3261670 D 232721 CDS YP_987297.1 121595401 4671745 3262073..3263416 1 NC_008782.1 PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sfv:SFV_2586 large terminal subunit of phenylpropionate dioxygenase; ring hydroxylating dioxygenase subunit alpha 3263416 4671745 Ajs_3092 Acidovorax sp. JS42 ring hydroxylating dioxygenase subunit alpha YP_987297.1 3262073 D 232721 CDS YP_987298.1 121595402 4671792 3263431..3264015 1 NC_008782.1 PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit beta 3264015 4671792 Ajs_3093 Acidovorax sp. JS42 aromatic-ring-hydroxylating dioxygenase subunit beta YP_987298.1 3263431 D 232721 CDS YP_987299.1 121595403 4672050 complement(3265718..3266698) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3266698 4672050 Ajs_3096 Acidovorax sp. JS42 transposase, IS4 family protein YP_987299.1 3265718 R 232721 CDS YP_987300.1 121595404 4672090 complement(3267209..3268030) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 3268030 4672090 Ajs_3098 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_987300.1 3267209 R 232721 CDS YP_987301.1 121595405 4672105 complement(3268020..3269552) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 3269552 4672105 Ajs_3099 Acidovorax sp. JS42 integrase catalytic subunit YP_987301.1 3268020 R 232721 CDS YP_987302.1 121595406 4671851 complement(3269636..3269980) 1 NC_008782.1 KEGG: pol:Bpro_1484 inner-membrane translocator; inner-membrane translocator 3269980 4671851 Ajs_3100 Acidovorax sp. JS42 inner-membrane translocator YP_987302.1 3269636 R 232721 CDS YP_987303.1 121595407 4672115 complement(3269967..3271568) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related; ABC transporter-like protein 3271568 4672115 Ajs_3101 Acidovorax sp. JS42 ABC transporter-like protein YP_987303.1 3269967 R 232721 CDS YP_987304.1 121595408 4672133 3271749..3273272 1 NC_008782.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 3273272 4672133 Ajs_3102 Acidovorax sp. JS42 molybdopterin dehydrogenase YP_987304.1 3271749 D 232721 CDS YP_987305.1 121595409 4672158 3273269..3275674 1 NC_008782.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 3275674 4672158 Ajs_3103 Acidovorax sp. JS42 molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase YP_987305.1 3273269 D 232721 CDS YP_987306.1 121595410 4672166 complement(3275710..3277812) 1 NC_008782.1 KEGG: csa:Csal_1723 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 3277812 4672166 Ajs_3104 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase YP_987306.1 3275710 R 232721 CDS YP_987307.1 121595411 4672243 complement(3278063..3278686) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_3168 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 3278686 4672243 Ajs_3105 Acidovorax sp. JS42 Crp/FNR family transcriptional regulator YP_987307.1 3278063 R 232721 CDS YP_987308.1 121595412 4672276 3280187..3282019 1 NC_008782.1 PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_2030 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3282019 4672276 Ajs_3107 Acidovorax sp. JS42 diguanylate cyclase/phosphodiesterase YP_987308.1 3280187 D 232721 CDS YP_987309.1 121595413 4672293 3282178..3282609 1 NC_008782.1 PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_0004 histidine triad (HIT) protein; histidine triad (HIT) protein 3282609 4672293 Ajs_3108 Acidovorax sp. JS42 histidine triad (HIT) protein YP_987309.1 3282178 D 232721 CDS YP_987310.1 121595414 4672310 complement(3282617..3283606) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3283606 4672310 Ajs_3109 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_987310.1 3282617 R 232721 CDS YP_987311.1 121595415 4672391 3283751..3285007 1 NC_008782.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3211 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3285007 4672391 Ajs_3110 Acidovorax sp. JS42 Bcr/CflA subfamily drug resistance transporter YP_987311.1 3283751 D 232721 CDS YP_987312.1 121595416 4672430 3284997..3285968 1 NC_008782.1 KEGG: rfr:Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 3285968 4672430 Ajs_3111 Acidovorax sp. JS42 tRNA delta(2)-isopentenylpyrophosphate transferase YP_987312.1 3284997 D 232721 CDS YP_987313.1 121595417 4672443 3285965..3286642 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related; ABC transporter-like protein 3286642 4672443 Ajs_3112 Acidovorax sp. JS42 ABC transporter-like protein YP_987313.1 3285965 D 232721 CDS YP_987314.1 121595418 4672441 complement(3286639..3287067) 1 NC_008782.1 PFAM: heat shock protein Hsp20; KEGG: cvi:CV1177 probable small heat shock protein; heat shock protein Hsp20 3287067 4672441 Ajs_3113 Acidovorax sp. JS42 heat shock protein Hsp20 YP_987314.1 3286639 R 232721 CDS YP_987315.1 121595419 4674409 3287205..3289838 1 NC_008782.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214; hypothetical protein 3289838 4674409 Ajs_3114 Acidovorax sp. JS42 hypothetical protein YP_987315.1 3287205 D 232721 CDS YP_987316.1 121595420 4672743 3289848..3290939 1 NC_008782.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_1520 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 3290939 4672743 Ajs_3115 Acidovorax sp. JS42 pyridoxal-5'-phosphate-dependent enzyme subunit beta YP_987316.1 3289848 D 232721 CDS YP_987317.1 121595421 4673163 3290939..3292081 1 NC_008782.1 KEGG: pol:Bpro_3228 secreted hydrolase-like; secreted hydrolase-like protein 3292081 4673163 Ajs_3116 Acidovorax sp. JS42 secreted hydrolase-like protein YP_987317.1 3290939 D 232721 CDS YP_987318.1 121595422 4672753 complement(3292283..3293284) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: rme:Rmet_3516 inner-membrane translocator; inner-membrane translocator 3293284 4672753 Ajs_3117 Acidovorax sp. JS42 inner-membrane translocator YP_987318.1 3292283 R 232721 CDS YP_987319.1 121595423 4672806 complement(3293302..3294186) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: reu:Reut_A3368 inner-membrane translocator; inner-membrane translocator 3294186 4672806 Ajs_3118 Acidovorax sp. JS42 inner-membrane translocator YP_987319.1 3293302 R 232721 CDS YP_987320.1 121595424 4672535 complement(3294223..3295419) 1 NC_008782.1 KEGG: reu:Reut_A3369 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3295419 4672535 Ajs_3119 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987320.1 3294223 R 232721 CDS YP_987321.1 121595425 4672533 complement(3295503..3296705) 1 NC_008782.1 KEGG: rso:RSc3342 putative substrate-binding periplasmic (pbp) ABC transporter protein; putative substrate-binding periplasmic (pbp) ABC transporter protein 3296705 4672533 Ajs_3120 Acidovorax sp. JS42 putative substrate-binding periplasmic (pbp) ABC transporter protein YP_987321.1 3295503 R 232721 CDS YP_987322.1 121595426 4672897 complement(3296751..3297464) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I3330 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 3297464 4672897 Ajs_3121 Acidovorax sp. JS42 ABC transporter-like protein YP_987322.1 3296751 R 232721 CDS YP_987323.1 121595427 4673016 complement(3297466..3298236) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein; ABC transporter-like protein 3298236 4673016 Ajs_3122 Acidovorax sp. JS42 ABC transporter-like protein YP_987323.1 3297466 R 232721 CDS YP_987324.1 121595428 4673035 complement(3298409..3299248) 1 NC_008782.1 PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rfr:Rfer_2857 putative transcriptional regulator, ModE family; ModE family transcriptional regulator 3299248 4673035 Ajs_3123 Acidovorax sp. JS42 ModE family transcriptional regulator YP_987324.1 3298409 R 232721 CDS YP_987325.1 121595429 4673040 3299273..3300028 1 NC_008782.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pae:PA1863 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3300028 4673040 Ajs_3124 Acidovorax sp. JS42 molybdenum ABC transporter periplasmic molybdate-binding protein YP_987325.1 3299273 D 232721 CDS YP_987326.1 121595430 4673050 3300104..3300787 1 NC_008782.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0824 molybdenum transport system permease protein; molybdate ABC transporter inner membrane subunit 3300787 4673050 Ajs_3125 Acidovorax sp. JS42 molybdate ABC transporter inner membrane subunit YP_987326.1 3300104 D 232721 CDS YP_987327.1 121595431 4673086 3300784..3301878 1 NC_008782.1 KEGG: rfr:Rfer_2860 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3301878 4673086 Ajs_3126 Acidovorax sp. JS42 molybdate ABC transporter ATPase YP_987327.1 3300784 D 232721 CDS YP_987328.1 121595432 4673159 complement(3302205..3303029) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bpa:BPP1941 putative exported protein; extracellular solute-binding protein 3303029 4673159 Ajs_3127 Acidovorax sp. JS42 extracellular solute-binding protein YP_987328.1 3302205 R 232721 CDS YP_987329.1 121595433 4673182 complement(3303026..3303802) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2128 probable ATP-binding component of ABC transporter; ABC transporter-like protein 3303802 4673182 Ajs_3128 Acidovorax sp. JS42 ABC transporter-like protein YP_987329.1 3303026 R 232721 CDS YP_987330.1 121595434 4673984 complement(3303799..3304536) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2869 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3304536 4673984 Ajs_3129 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_987330.1 3303799 R 232721 CDS YP_987331.1 121595435 4673986 3304587..3305708 1 NC_008782.1 PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_2870 transcriptional regulator of molybdate metabolism, LysR family; molybdate metabolism transcriptional regulator 3305708 4673986 Ajs_3130 Acidovorax sp. JS42 molybdate metabolism transcriptional regulator YP_987331.1 3304587 D 232721 CDS YP_987332.1 121595436 4673369 complement(3305745..3307724) 1 NC_008782.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4053 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 3307724 4673369 Ajs_3131 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctM YP_987332.1 3305745 R 232721 CDS YP_987333.1 121595437 4673391 complement(3307721..3308341) 1 NC_008782.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4052 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 3308341 4673391 Ajs_3132 Acidovorax sp. JS42 tripartite ATP-independent periplasmic transporter DctQ YP_987333.1 3307721 R 232721 CDS YP_987334.1 121595438 4673461 complement(3308469..3309584) 1 NC_008782.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4051 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 3309584 4673461 Ajs_3133 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_987334.1 3308469 R 232721 CDS YP_987335.1 121595439 4673486 3310017..3311069 1 NC_008782.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: psb:Psyr_2143 malate/L-lactate dehydrogenase; delta1-piperideine 2-carboxylate reductase 3311069 4673486 Ajs_3134 Acidovorax sp. JS42 delta1-piperideine 2-carboxylate reductase YP_987335.1 3310017 D 232721 CDS YP_987336.1 121595440 4673618 complement(3311164..3312411) 1 NC_008782.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0898 major facilitator superfamily (MFS) multidrug efflux pump, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3312411 4673618 Ajs_3135 Acidovorax sp. JS42 Bcr/CflA subfamily drug resistance transporter YP_987336.1 3311164 R 232721 CDS YP_987337.1 121595441 4673641 complement(3312471..3314108) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase; AMP-dependent synthetase and ligase 3314108 4673641 Ajs_3136 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_987337.1 3312471 R 232721 CDS YP_987338.1 121595442 4673727 3314198..3316159 1 NC_008782.1 KEGG: rfr:Rfer_2203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 3316159 4673727 Ajs_3137 Acidovorax sp. JS42 DNA primase YP_987338.1 3314198 D 232721 CDS YP_987339.1 121595443 4673740 3316445..3318838 1 NC_008782.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD); RpoD family RNA polymerase sigma factor 3318838 4673740 Ajs_3138 Acidovorax sp. JS42 RpoD family RNA polymerase sigma factor YP_987339.1 3316445 D 232721 CDS YP_987340.1 121595444 4673791 3319043..3320002 1 NC_008782.1 KEGG: eba:ebA232 ketopantoate reductase ApbA; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3320002 4673791 Ajs_3139 Acidovorax sp. JS42 2-dehydropantoate 2-reductase YP_987340.1 3319043 D 232721 CDS YP_987341.1 121595445 4673829 3320167..3320625 1 NC_008782.1 KEGG: pol:Bpro_3366 putative protein-S-isoprenylcysteine methyltransferase-like; putative protein-S-isoprenylcysteine methyltransferase-like protein 3320625 4673829 Ajs_3140 Acidovorax sp. JS42 putative protein-S-isoprenylcysteine methyltransferase-like protein YP_987341.1 3320167 D 232721 CDS YP_987342.1 121595446 4673995 complement(3320670..3321671) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2351 uncharacterized protein UPF0065; hypothetical protein 3321671 4673995 Ajs_3141 Acidovorax sp. JS42 hypothetical protein YP_987342.1 3320670 R 232721 CDS YP_987343.1 121595447 4674697 complement(3321768..3322976) 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2352 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3322976 4674697 Ajs_3142 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_987343.1 3321768 R 232721 CDS YP_987344.1 121595448 4674551 complement(3323015..3323986) 1 NC_008782.1 PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_2353 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 3323986 4674551 Ajs_3143 Acidovorax sp. JS42 hydroxymethylglutaryl-CoA lyase YP_987344.1 3323015 R 232721 CDS YP_987345.1 121595449 4674494 3324098..3325000 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 3325000 4674494 Ajs_3144 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987345.1 3324098 D 232721 CDS YP_987346.1 121595450 4674456 3325175..3325480 1 NC_008782.1 KEGG: pol:Bpro_3120 putative transcriptional regulator; putative transcriptional regulator 3325480 4674456 Ajs_3145 Acidovorax sp. JS42 putative transcriptional regulator YP_987346.1 3325175 D 232721 CDS YP_987347.1 121595451 4674408 3325609..3325968 1 NC_008782.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: rfr:Rfer_1971 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase 3325968 4674408 Ajs_3146 Acidovorax sp. JS42 peptidylprolyl isomerase YP_987347.1 3325609 D 232721 CDS YP_987348.1 121595452 4674112 complement(3326061..3327452) 1 NC_008782.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 3327452 rimO 4674112 rimO Acidovorax sp. JS42 ribosomal protein S12 methylthiotransferase YP_987348.1 3326061 R 232721 CDS YP_987349.1 121595453 4674288 complement(3327480..3328049) 1 NC_008782.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor, PhaR 3328049 4674288 Ajs_3148 Acidovorax sp. JS42 polyhydroxyalkonate synthesis repressor, PhaR YP_987349.1 3327480 R 232721 CDS YP_987350.1 121595454 4674241 complement(3328386..3330629) 1 NC_008782.1 KEGG: rfr:Rfer_2071 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 3330629 4674241 Ajs_3149 Acidovorax sp. JS42 (p)ppGpp synthetase I SpoT/RelA YP_987350.1 3328386 R 232721 CDS YP_987351.1 121595455 4673724 complement(3330626..3331561) 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3331561 4673724 Ajs_3150 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_987351.1 3330626 R 232721 CDS YP_987352.1 121595456 4673672 3331631..3332413 1 NC_008782.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3332413 4673672 Ajs_3151 Acidovorax sp. JS42 3-hydroxybutyrate dehydrogenase YP_987352.1 3331631 D 232721 CDS YP_987353.1 121595457 4673665 complement(3332493..3333206) 1 NC_008782.1 PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541; hypothetical protein 3333206 4673665 Ajs_3152 Acidovorax sp. JS42 hypothetical protein YP_987353.1 3332493 R 232721 CDS YP_987354.1 121595458 4673651 3333427..3334158 1 NC_008782.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3334158 ompR 4673651 ompR Acidovorax sp. JS42 osmolarity response regulator YP_987354.1 3333427 D 232721 CDS YP_987355.1 121595459 4673643 3334242..3335747 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3335747 4673643 Ajs_3154 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_987355.1 3334242 D 232721 CDS YP_987356.1 121595460 4673604 complement(3335823..3336326) 1 NC_008782.1 KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3336326 4673604 Ajs_3155 Acidovorax sp. JS42 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_987356.1 3335823 R 232721 CDS YP_987357.1 121595461 4673589 complement(3336323..3337246) 1 NC_008782.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3337246 4673589 Ajs_3156 Acidovorax sp. JS42 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_987357.1 3336323 R 232721 CDS YP_987358.1 121595462 4673559 3337264..3340758 1 NC_008782.1 KEGG: rfr:Rfer_1331 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 3340758 4673559 Ajs_3157 Acidovorax sp. JS42 transcription-repair coupling factor YP_987358.1 3337264 D 232721 CDS YP_987359.1 121595463 4673541 3340767..3341441 1 NC_008782.1 KEGG: rme:Rmet_1193 hypothetical protein; hypothetical protein 3341441 4673541 Ajs_3158 Acidovorax sp. JS42 hypothetical protein YP_987359.1 3340767 D 232721 CDS YP_987360.1 121595464 4673532 3341483..3342199 1 NC_008782.1 KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase 3342199 4673532 Ajs_3159 Acidovorax sp. JS42 phosphoserine phosphatase YP_987360.1 3341483 D 232721 CDS YP_987361.1 121595465 4673528 3342435..3343220 1 NC_008782.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4519 putative exported protein; YaeC family lipoprotein 3343220 4673528 Ajs_3160 Acidovorax sp. JS42 YaeC family lipoprotein YP_987361.1 3342435 D 232721 CDS YP_987362.1 121595466 4673503 complement(3343294..3343953) 1 NC_008782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3343953 4673503 Ajs_3161 Acidovorax sp. JS42 lysine exporter protein LysE/YggA YP_987362.1 3343294 R 232721 CDS YP_987363.1 121595467 4673494 3343997..3344908 1 NC_008782.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3344908 4673494 Ajs_3162 Acidovorax sp. JS42 chromosome replication initiation inhibitor protein YP_987363.1 3343997 D 232721 CDS YP_987364.1 121595468 4673469 complement(3344963..3345463) 1 NC_008782.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1883 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 3345463 4673469 Ajs_3163 Acidovorax sp. JS42 BadM/Rrf2 family transcriptional regulator YP_987364.1 3344963 R 232721 CDS YP_987365.1 121595469 4673436 3345553..3346275 1 NC_008782.1 PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_B5056 protein of unknown function DUF542, ScdA N-terminal:hemerythrin HHE cation binding region; hypothetical protein 3346275 4673436 Ajs_3164 Acidovorax sp. JS42 hypothetical protein YP_987365.1 3345553 D 232721 CDS YP_987366.1 121595470 4673251 complement(3346282..3346647) 1 NC_008782.1 KEGG: rme:Rmet_3997 hypothetical protein; hypothetical protein 3346647 4673251 Ajs_3165 Acidovorax sp. JS42 hypothetical protein YP_987366.1 3346282 R 232721 CDS YP_987367.1 121595471 4673415 complement(3346647..3347093) 1 NC_008782.1 KEGG: par:Psyc_0620 hypothetical protein; hypothetical protein 3347093 4673415 Ajs_3166 Acidovorax sp. JS42 hypothetical protein YP_987367.1 3346647 R 232721 CDS YP_987368.1 121595472 4673232 complement(3347112..3348176) 1 NC_008782.1 PFAM: aldo/keto reductase; KEGG: rfr:Rfer_3469 aldo/keto reductase; aldo/keto reductase 3348176 4673232 Ajs_3167 Acidovorax sp. JS42 aldo/keto reductase YP_987368.1 3347112 R 232721 CDS YP_987369.1 121595473 4673382 complement(3348190..3348405) 1 NC_008782.1 PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein; SlyX family protein 3348405 4673382 Ajs_3168 Acidovorax sp. JS42 SlyX family protein YP_987369.1 3348190 R 232721 CDS YP_987370.1 121595474 4673378 complement(3348411..3349655) 1 NC_008782.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II; GntR family transcriptional regulator 3349655 4673378 Ajs_3169 Acidovorax sp. JS42 GntR family transcriptional regulator YP_987370.1 3348411 R 232721 CDS YP_987371.1 121595475 4673013 3349718..3350368 1 NC_008782.1 KEGG: pol:Bpro_2747 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 3350368 4673013 Ajs_3170 Acidovorax sp. JS42 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase YP_987371.1 3349718 D 232721 CDS YP_987372.1 121595476 4672988 complement(3350406..3351233) 1 NC_008782.1 KEGG: bur:Bcep18194_B2655 hypothetical protein; hypothetical protein 3351233 4672988 Ajs_3171 Acidovorax sp. JS42 hypothetical protein YP_987372.1 3350406 R 232721 CDS YP_987373.1 121595477 4672981 complement(3351254..3353071) 1 NC_008782.1 KEGG: bur:Bcep18194_C7091 hypothetical protein; hypothetical protein 3353071 4672981 Ajs_3172 Acidovorax sp. JS42 hypothetical protein YP_987373.1 3351254 R 232721 CDS YP_987374.1 121595478 4672929 complement(3353152..3355965) 1 NC_008782.1 PFAM: Tetratricopeptide TPR_4; KEGG: pst:PSPTO_1193 hypothetical protein; hypothetical protein 3355965 4672929 Ajs_3173 Acidovorax sp. JS42 hypothetical protein YP_987374.1 3353152 R 232721 CDS YP_987375.1 121595479 4672879 complement(3359657..3360715) 1 NC_008782.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: rfr:Rfer_2611 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3360715 4672879 Ajs_3176 Acidovorax sp. JS42 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_987375.1 3359657 R 232721 CDS YP_987376.1 121595480 4672859 complement(3360821..3361582) 1 NC_008782.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: dar:Daro_0141 nitroreductase; cob(II)yrinic acid a,c-diamide reductase 3361582 4672859 Ajs_3177 Acidovorax sp. JS42 cob(II)yrinic acid a,c-diamide reductase YP_987376.1 3360821 R 232721 CDS YP_987377.1 121595481 4672850 complement(3361850..3363331) 1 NC_008782.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ; adenosylcobyric acid synthase 3363331 4672850 Ajs_3178 Acidovorax sp. JS42 adenosylcobyric acid synthase YP_987377.1 3361850 R 232721 CDS YP_987378.1 121595482 4672811 complement(3363328..3364332) 1 NC_008782.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II; aminotransferase 3364332 4672811 Ajs_3179 Acidovorax sp. JS42 aminotransferase YP_987378.1 3363328 R 232721 CDS YP_987379.1 121595483 4672661 complement(3364325..3365302) 1 NC_008782.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rfr:Rfer_2616 cobalamin biosynthesis protein CobD; adenosylcobinamide-phosphate synthase 3365302 4672661 Ajs_3180 Acidovorax sp. JS42 adenosylcobinamide-phosphate synthase YP_987379.1 3364325 R 232721 CDS YP_987380.1 121595484 4672767 3365481..3366008 1 NC_008782.1 KEGG: reu:Reut_A0400 prokaryotic N-terminal methylation site; N-terminal methylation site 3366008 4672767 Ajs_3181 Acidovorax sp. JS42 N-terminal methylation site YP_987380.1 3365481 D 232721 CDS YP_987381.1 121595485 4672746 3366046..3366630 1 NC_008782.1 KEGG: rso:RS05337 putative type-4 fimbrial pilin related signal peptide protein; putative type-4 fimbrial pilin related signal peptide protein 3366630 4672746 Ajs_3182 Acidovorax sp. JS42 putative type-4 fimbrial pilin related signal peptide protein YP_987381.1 3366046 D 232721 CDS YP_987382.1 121595486 4672360 3366618..3367091 1 NC_008782.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: lpf:lpl0668 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 3367091 4672360 Ajs_3183 Acidovorax sp. JS42 type IV pilus modification protein PilV YP_987382.1 3366618 D 232721 CDS YP_987383.1 121595487 4672329 3367122..3368210 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3368210 4672329 Ajs_3184 Acidovorax sp. JS42 transposase, IS4 family protein YP_987383.1 3367122 D 232721 CDS YP_987384.1 121595488 4672297 3368408..3368662 1 NC_008782.1 hypothetical protein 3368662 4672297 Ajs_3185 Acidovorax sp. JS42 hypothetical protein YP_987384.1 3368408 D 232721 CDS YP_987385.1 121595489 4672280 3368694..3369590 1 NC_008782.1 KEGG: rso:RSc0726 probable transmembrane protein; hypothetical protein 3369590 4672280 Ajs_3186 Acidovorax sp. JS42 hypothetical protein YP_987385.1 3368694 D 232721 CDS YP_987386.1 121595490 4672226 3369594..3370364 1 NC_008782.1 KEGG: rfr:Rfer_2662 putative transmembrane protein; hypothetical protein 3370364 4672226 Ajs_3187 Acidovorax sp. JS42 hypothetical protein YP_987386.1 3369594 D 232721 CDS YP_987387.1 121595491 4672217 3370447..3373911 1 NC_008782.1 KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 3373911 4672217 Ajs_3188 Acidovorax sp. JS42 type 4 fimbrial biogenesis protein PilY1 YP_987387.1 3370447 D 232721 CDS YP_987388.1 121595492 4672204 3373997..3374485 1 NC_008782.1 KEGG: net:Neut_1832 fimbrial protein pilin; fimbrial protein pilin 3374485 4672204 Ajs_3189 Acidovorax sp. JS42 fimbrial protein pilin YP_987388.1 3373997 D 232721 CDS YP_987389.1 121595493 4672169 3374521..3375621 1 NC_008782.1 KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase 3375621 4672169 Ajs_3190 Acidovorax sp. JS42 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_987389.1 3374521 D 232721 CDS YP_987390.1 121595494 4671967 3375744..3377474 1 NC_008782.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 3377474 4671967 Ajs_3191 Acidovorax sp. JS42 phospholipase D/transphosphatidylase YP_987390.1 3375744 D 232721 CDS YP_987391.1 121595495 4672102 complement(3377434..3378462) 1 NC_008782.1 PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS; dihydrouridine synthase 3378462 4672102 Ajs_3192 Acidovorax sp. JS42 dihydrouridine synthase YP_987391.1 3377434 R 232721 CDS YP_987392.1 121595496 4672070 complement(3378540..3379712) 1 NC_008782.1 PFAM: methyltransferase small; KEGG: eba:ebA5030 hypothetical protein; methyltransferase small 3379712 4672070 Ajs_3193 Acidovorax sp. JS42 methyltransferase small YP_987392.1 3378540 R 232721 CDS YP_987393.1 121595497 4672063 complement(3379721..3380371) 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2769 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3380371 4672063 Ajs_3194 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_987393.1 3379721 R 232721 CDS YP_987394.1 121595498 4671742 complement(3380400..3381890) 1 NC_008782.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase 3381890 4671742 Ajs_3195 Acidovorax sp. JS42 aldehyde dehydrogenase YP_987394.1 3380400 R 232721 CDS YP_987395.1 121595499 4671694 3381952..3382356 1 NC_008782.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3382356 4671694 Ajs_3196 Acidovorax sp. JS42 glutathione-dependent formaldehyde-activating protein YP_987395.1 3381952 D 232721 CDS YP_987396.1 121595500 4671688 complement(3382440..3382745) 1 NC_008782.1 KEGG: rfr:Rfer_2034 hypothetical protein; hypothetical protein 3382745 4671688 Ajs_3197 Acidovorax sp. JS42 hypothetical protein YP_987396.1 3382440 R 232721 CDS YP_987397.1 121595501 4671477 complement(3382810..3385413) 1 NC_008782.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2; ATPase 3385413 4671477 Ajs_3198 Acidovorax sp. JS42 ATPase YP_987397.1 3382810 R 232721 CDS YP_987398.1 121595502 4671458 complement(3385482..3385958) 1 NC_008782.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE; molybdopterin synthase subunit MoaE 3385958 4671458 Ajs_3199 Acidovorax sp. JS42 molybdopterin synthase subunit MoaE YP_987398.1 3385482 R 232721 CDS YP_987399.1 121595503 4671606 3386025..3386279 1 NC_008782.1 hypothetical protein 3386279 4671606 Ajs_3200 Acidovorax sp. JS42 hypothetical protein YP_987399.1 3386025 D 232721 CDS YP_987400.1 121595504 4671575 3386611..3386940 1 NC_008782.1 hypothetical protein 3386940 4671575 Ajs_3201 Acidovorax sp. JS42 hypothetical protein YP_987400.1 3386611 D 232721 CDS YP_987401.1 121595505 4671044 complement(3386947..3387210) 1 NC_008782.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rfr:Rfer_1916 molybdopterin converting factor, subunit 1; molybdopterin synthase subunit MoaD 3387210 4671044 Ajs_3202 Acidovorax sp. JS42 molybdopterin synthase subunit MoaD YP_987401.1 3386947 R 232721 CDS YP_987402.1 121595506 4671031 complement(3387207..3388451) 1 NC_008782.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein 3388451 4671031 Ajs_3203 Acidovorax sp. JS42 molybdenum cofactor synthesis domain-containing protein YP_987402.1 3387207 R 232721 CDS YP_987403.1 121595507 4671028 complement(3388448..3388999) 1 NC_008782.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 3388999 4671028 Ajs_3204 Acidovorax sp. JS42 molybdopterin-guanine dinucleotide biosynthesis protein B YP_987403.1 3388448 R 232721 CDS YP_987404.1 121595508 4670982 complement(3389079..3390509) 1 NC_008782.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3390509 4670982 Ajs_3205 Acidovorax sp. JS42 threonine synthase YP_987404.1 3389079 R 232721 CDS YP_987405.1 121595509 4670934 complement(3390525..3391886) 1 NC_008782.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 3391886 4670934 Ajs_3206 Acidovorax sp. JS42 homoserine dehydrogenase YP_987405.1 3390525 R 232721 CDS YP_987406.1 121595510 4670905 complement(3391957..3393189) 1 NC_008782.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 3393189 4670905 Ajs_3207 Acidovorax sp. JS42 aminotransferase AlaT YP_987406.1 3391957 R 232721 CDS YP_987407.1 121595511 4670894 3393270..3393716 1 NC_008782.1 PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498; hypothetical protein 3393716 4670894 Ajs_3208 Acidovorax sp. JS42 hypothetical protein YP_987407.1 3393270 D 232721 CDS YP_987408.1 121595512 4670524 3393882..3394370 1 NC_008782.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3394370 4670524 Ajs_3209 Acidovorax sp. JS42 alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen YP_987408.1 3393882 D 232721 CDS YP_987409.1 121595513 4670787 3394526..3396289 1 NC_008782.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein; PhoH family protein 3396289 4670787 Ajs_3210 Acidovorax sp. JS42 PhoH family protein YP_987409.1 3394526 D 232721 CDS YP_987410.1 121595514 4670770 3396289..3396654 1 NC_008782.1 KEGG: nmu:Nmul_A1081 hypothetical protein; hypothetical protein 3396654 4670770 Ajs_3211 Acidovorax sp. JS42 hypothetical protein YP_987410.1 3396289 D 232721 CDS YP_987411.1 121595515 4670749 complement(3396726..3398144) 1 NC_008782.1 KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; primary replicative DNA helicase 3398144 4670749 Ajs_3212 Acidovorax sp. JS42 primary replicative DNA helicase YP_987411.1 3396726 R 232721 CDS YP_987412.1 121595516 4670695 complement(3398326..3398778) 1 NC_008782.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3398778 rplI 4670695 rplI Acidovorax sp. JS42 50S ribosomal protein L9 YP_987412.1 3398326 R 232721 CDS YP_987413.1 121595517 4670507 complement(3398793..3399074) 1 NC_008782.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3399074 rpsR 4670507 rpsR Acidovorax sp. JS42 30S ribosomal protein S18 YP_987413.1 3398793 R 232721 CDS YP_987414.1 121595518 4674308 complement(3399093..3399383) 1 NC_008782.1 KEGG: rfr:Rfer_2194 putative primosomal replication protein; putative primosomal replication protein 3399383 4674308 Ajs_3215 Acidovorax sp. JS42 putative primosomal replication protein YP_987414.1 3399093 R 232721 CDS YP_987415.1 121595519 4670622 complement(3399409..3399786) 1 NC_008782.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3399786 rpsF 4670622 rpsF Acidovorax sp. JS42 30S ribosomal protein S6 YP_987415.1 3399409 R 232721 CDS YP_987416.1 121595520 4670777 3400026..3400562 1 NC_008782.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3400562 4670777 Ajs_3217 Acidovorax sp. JS42 heat shock protein GrpE YP_987416.1 3400026 D 232721 CDS YP_987417.1 121595521 4670595 3400650..3402590 1 NC_008782.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3402590 dnaK 4670595 dnaK Acidovorax sp. JS42 molecular chaperone DnaK YP_987417.1 3400650 D 232721 CDS YP_987418.1 121595522 4671320 3402686..3403816 1 NC_008782.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3403816 4671320 Ajs_3219 Acidovorax sp. JS42 chaperone protein DnaJ YP_987418.1 3402686 D 232721 CDS YP_987419.1 121595523 4671325 3404007..3405053 1 NC_008782.1 PFAM: peptidase U32; KEGG: rfr:Rfer_0136 peptidase U32; peptidase U32 3405053 4671325 Ajs_3220 Acidovorax sp. JS42 peptidase U32 YP_987419.1 3404007 D 232721 CDS YP_987420.1 121595524 4670625 3405163..3406065 1 NC_008782.1 PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32; peptidase U32 3406065 4670625 Ajs_3221 Acidovorax sp. JS42 peptidase U32 YP_987420.1 3405163 D 232721 CDS YP_987421.1 121595525 4670694 3406091..3406609 1 NC_008782.1 KEGG: rfr:Rfer_0134 hypothetical protein; hypothetical protein 3406609 4670694 Ajs_3222 Acidovorax sp. JS42 hypothetical protein YP_987421.1 3406091 D 232721 CDS YP_987422.1 121595526 4670739 3406606..3407004 1 NC_008782.1 KEGG: bte:BTH_I1807 hypothetical protein; hypothetical protein 3407004 4670739 Ajs_3223 Acidovorax sp. JS42 hypothetical protein YP_987422.1 3406606 D 232721 CDS YP_987423.1 121595527 4670891 3407001..3407588 1 NC_008782.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: reu:Reut_A3048 phenylacrylic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3407588 4670891 Ajs_3224 Acidovorax sp. JS42 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_987423.1 3407001 D 232721 CDS YP_987424.1 121595528 4670970 3407645..3409129 1 NC_008782.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rfr:Rfer_0132 carboxylyase-related protein; 3-octaprenyl-4hydroxybenzoate decarboxylase 3409129 4670970 Ajs_3225 Acidovorax sp. JS42 3-octaprenyl-4hydroxybenzoate decarboxylase YP_987424.1 3407645 D 232721 CDS YP_987425.1 121595529 4671006 3409193..3410353 1 NC_008782.1 PFAM: cytochrome P450; KEGG: bms:BRA0388 heme-thiolate monooxygenase, putative; cytochrome P450 3410353 4671006 Ajs_3226 Acidovorax sp. JS42 cytochrome P450 YP_987425.1 3409193 D 232721 CDS YP_987426.1 121595530 4671071 3410398..3411762 1 NC_008782.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rfr:Rfer_1967 beta-lactamase-like; beta-lactamase domain-containing protein 3411762 4671071 Ajs_3227 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_987426.1 3410398 D 232721 CDS YP_987427.1 121595531 4671089 3411951..3412907 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family; LysR family transcriptional regulator 3412907 4671089 Ajs_3228 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987427.1 3411951 D 232721 CDS YP_987428.1 121595532 4671094 3412948..3414369 1 NC_008782.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3414369 4671094 Ajs_3229 Acidovorax sp. JS42 isopropylmalate isomerase large subunit YP_987428.1 3412948 D 232721 CDS YP_987429.1 121595533 4671115 3414383..3414505 1 NC_008782.1 PFAM: Entericidin EcnAB; entericidin EcnAB 3414505 4671115 Ajs_3230 Acidovorax sp. JS42 entericidin EcnAB YP_987429.1 3414383 D 232721 CDS YP_987430.1 121595534 4671143 3414538..3414945 1 NC_008782.1 hypothetical protein 3414945 4671143 Ajs_3231 Acidovorax sp. JS42 hypothetical protein YP_987430.1 3414538 D 232721 CDS YP_987431.1 121595535 4671293 3414987..3415637 1 NC_008782.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3415637 leuD 4671293 leuD Acidovorax sp. JS42 isopropylmalate isomerase small subunit YP_987431.1 3414987 D 232721 CDS YP_987432.1 121595536 4671220 3415734..3416807 1 NC_008782.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3416807 4671220 Ajs_3233 Acidovorax sp. JS42 3-isopropylmalate dehydrogenase YP_987432.1 3415734 D 232721 CDS YP_987433.1 121595537 4671487 3416971..3417744 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase; short chain dehydrogenase 3417744 4671487 Ajs_3234 Acidovorax sp. JS42 short chain dehydrogenase YP_987433.1 3416971 D 232721 CDS YP_987434.1 121595538 4671905 3418022..3419152 1 NC_008782.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3419152 4671905 Ajs_3235 Acidovorax sp. JS42 aspartate-semialdehyde dehydrogenase YP_987434.1 3418022 D 232721 CDS YP_987435.1 121595539 4671947 3419322..3422078 1 NC_008782.1 KEGG: pol:Bpro_3613 putative transmembrane protein; hypothetical protein 3422078 4671947 Ajs_3236 Acidovorax sp. JS42 hypothetical protein YP_987435.1 3419322 D 232721 CDS YP_987436.1 121595540 4671559 3422149..3422973 1 NC_008782.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3422973 truA 4671559 truA Acidovorax sp. JS42 tRNA pseudouridine synthase A YP_987436.1 3422149 D 232721 CDS YP_987437.1 121595541 4671465 3422970..3423713 1 NC_008782.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rfr:Rfer_1789 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 3423713 4671465 Ajs_3238 Acidovorax sp. JS42 phosphoribosylanthranilate isomerase YP_987437.1 3422970 D 232721 CDS YP_987438.1 121595542 4671786 3423714..3424982 1 NC_008782.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3424982 4671786 Ajs_3239 Acidovorax sp. JS42 tryptophan synthase subunit beta YP_987438.1 3423714 D 232721 CDS YP_987439.1 121595543 4671822 3424979..3425788 1 NC_008782.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3425788 trpA 4671822 trpA Acidovorax sp. JS42 tryptophan synthase subunit alpha YP_987439.1 3424979 D 232721 CDS YP_987440.1 121595544 4671903 3425849..3426721 1 NC_008782.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 3426721 4671903 Ajs_3241 Acidovorax sp. JS42 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_987440.1 3425849 D 232721 CDS YP_987441.1 121595545 4671917 complement(3426800..3427348) 1 NC_008782.1 PFAM: protein of unknown function YGGT; KEGG: rfr:Rfer_1785 protein of unknown function YGGT; hypothetical protein 3427348 4671917 Ajs_3242 Acidovorax sp. JS42 hypothetical protein YP_987441.1 3426800 R 232721 CDS YP_987442.1 121595546 4672603 3427434..3428081 1 NC_008782.1 PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16, lon domain-containing protein 3428081 4672603 Ajs_3243 Acidovorax sp. JS42 peptidase S16, lon domain-containing protein YP_987442.1 3427434 D 232721 CDS YP_987443.1 121595547 4672494 3428088..3429191 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1; group 1 glycosyl transferase 3429191 4672494 Ajs_3244 Acidovorax sp. JS42 group 1 glycosyl transferase YP_987443.1 3428088 D 232721 CDS YP_987444.1 121595548 4672083 3429188..3430501 1 NC_008782.1 PFAM: sugar transferase; KEGG: rme:Rmet_2718 sugar transferase; sugar transferase 3430501 4672083 Ajs_3245 Acidovorax sp. JS42 sugar transferase YP_987444.1 3429188 D 232721 CDS YP_987445.1 121595549 4671976 complement(3430505..3431209) 1 NC_008782.1 KEGG: bja:blr2372 hypothetical protein; hypothetical protein 3431209 4671976 Ajs_3246 Acidovorax sp. JS42 hypothetical protein YP_987445.1 3430505 R 232721 CDS YP_987446.1 121595550 4672313 3431240..3432235 1 NC_008782.1 PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1; group 1 glycosyl transferase 3432235 4672313 Ajs_3247 Acidovorax sp. JS42 group 1 glycosyl transferase YP_987446.1 3431240 D 232721 CDS YP_987447.1 121595551 4672411 3432229..3433101 1 NC_008782.1 KEGG: bte:BTH_I1358 putative glycosyltransferase; putative glycosyltransferase 3433101 4672411 Ajs_3248 Acidovorax sp. JS42 putative glycosyltransferase YP_987447.1 3432229 D 232721 CDS YP_987448.1 121595552 4672424 3433119..3434249 1 NC_008782.1 hypothetical protein 3434249 4672424 Ajs_3249 Acidovorax sp. JS42 hypothetical protein YP_987448.1 3433119 D 232721 CDS YP_987449.1 121595553 4672449 3434285..3435832 1 NC_008782.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3435832 lysS 4672449 lysS Acidovorax sp. JS42 lysyl-tRNA synthetase YP_987449.1 3434285 D 232721 CDS YP_987450.1 121595554 4672462 3435906..3436931 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dar:Daro_1597 GGDEF; response regulator receiver modulated diguanylate cyclase 3436931 4672462 Ajs_3251 Acidovorax sp. JS42 response regulator receiver modulated diguanylate cyclase YP_987450.1 3435906 D 232721 CDS YP_987451.1 121595555 4672473 3436966..3437634 1 NC_008782.1 KEGG: pae:PA5251 hypothetical protein; small-conductance mechanosensitive channel-like protein 3437634 4672473 Ajs_3252 Acidovorax sp. JS42 small-conductance mechanosensitive channel-like protein YP_987451.1 3436966 D 232721 CDS YP_987452.1 121595556 4674295 3437997..3439118 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB2916 leu/ile/val-binding protein precursor; extracellular ligand-binding receptor 3439118 4674295 Ajs_3253 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987452.1 3437997 D 232721 CDS YP_987453.1 121595557 4673158 3439220..3440146 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: bbr:BB2908 high-affinity branched-chain amino acid transport system, permease protein; inner-membrane translocator 3440146 4673158 Ajs_3254 Acidovorax sp. JS42 inner-membrane translocator YP_987453.1 3439220 D 232721 CDS YP_987454.1 121595558 4673131 3440146..3441387 1 NC_008782.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3441387 livM 4673131 livM Acidovorax sp. JS42 leucine/isoleucine/valine transporter permease subunit YP_987454.1 3440146 D 232721 CDS YP_987455.1 121595559 4673104 3441384..3442151 1 NC_008782.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3442151 livG 4673104 livG Acidovorax sp. JS42 leucine/isoleucine/valine transporter ATP-binding subunit YP_987455.1 3441384 D 232721 CDS YP_987456.1 121595560 4672789 3442151..3442864 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bps:BPSS0579 high-affinity branched-chain amino acid transport ATP-binding protein; ABC transporter-like protein 3442864 4672789 Ajs_3257 Acidovorax sp. JS42 ABC transporter-like protein YP_987456.1 3442151 D 232721 CDS YP_987457.1 121595561 4672688 3443195..3443515 1 NC_008782.1 KEGG: ddi:DDB0205680 hypothetical protein; hypothetical protein 3443515 4672688 Ajs_3258 Acidovorax sp. JS42 hypothetical protein YP_987457.1 3443195 D 232721 CDS YP_987458.1 121595562 4672893 complement(3443868..3444320) 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: nmu:Nmul_A0996 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3444320 4672893 Ajs_3259 Acidovorax sp. JS42 alkylhydroperoxidase YP_987458.1 3443868 R 232721 CDS YP_987459.1 121595563 4672956 complement(3444551..3445603) 1 NC_008782.1 PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily; 6-phosphofructokinase 3445603 4672956 Ajs_3260 Acidovorax sp. JS42 6-phosphofructokinase YP_987459.1 3444551 R 232721 CDS YP_987460.1 121595564 4673005 complement(3445618..3446727) 1 NC_008782.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rfr:Rfer_1754 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase 3446727 4673005 Ajs_3261 Acidovorax sp. JS42 beta-N-acetylhexosaminidase YP_987460.1 3445618 R 232721 CDS YP_987461.1 121595565 4673052 complement(3446786..3447178) 1 NC_008782.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 3447178 acpS 4673052 acpS Acidovorax sp. JS42 4'-phosphopantetheinyl transferase YP_987461.1 3446786 R 232721 CDS YP_987462.1 121595566 4672738 complement(3447230..3448009) 1 NC_008782.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 3448009 4672738 Ajs_3263 Acidovorax sp. JS42 pyridoxine 5'-phosphate synthase YP_987462.1 3447230 R 232721 CDS YP_987463.1 121595567 4673081 complement(3448149..3449864) 1 NC_008782.1 KEGG: mfa:Mfla_0595 hypothetical protein; hypothetical protein 3449864 4673081 Ajs_3264 Acidovorax sp. JS42 hypothetical protein YP_987463.1 3448149 R 232721 CDS YP_987464.1 121595568 4673092 complement(3450047..3450835) 1 NC_008782.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: rfr:Rfer_1751 DNA repair protein RecO; DNA repair protein RecO 3450835 4673092 Ajs_3265 Acidovorax sp. JS42 DNA repair protein RecO YP_987464.1 3450047 R 232721 CDS YP_987465.1 121595569 4673114 complement(3451089..3452102) 1 NC_008782.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: rfr:Rfer_1744 GTP-binding protein Era; GTP-binding protein Era 3452102 4673114 Ajs_3266 Acidovorax sp. JS42 GTP-binding protein Era YP_987465.1 3451089 R 232721 CDS YP_987466.1 121595570 4673936 complement(3452099..3452785) 1 NC_008782.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 3452785 rnc 4673936 rnc Acidovorax sp. JS42 ribonuclease III YP_987466.1 3452099 R 232721 CDS YP_987467.1 121595571 4673908 complement(3452791..3453168) 1 NC_008782.1 KEGG: rfr:Rfer_1742 putative transmembrane protein; hypothetical protein 3453168 4673908 Ajs_3268 Acidovorax sp. JS42 hypothetical protein YP_987467.1 3452791 R 232721 CDS YP_987468.1 121595572 4673993 complement(3453196..3454164) 1 NC_008782.1 KEGG: rfr:Rfer_1741 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 3454164 4673993 Ajs_3269 Acidovorax sp. JS42 signal peptidase I YP_987468.1 3453196 R 232721 CDS YP_987469.1 121595573 4673357 complement(3454179..3455987) 1 NC_008782.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3455987 4673357 Ajs_3270 Acidovorax sp. JS42 GTP-binding protein LepA YP_987469.1 3454179 R 232721 CDS YP_987470.1 121595574 4673502 complement(3456428..3457858) 1 NC_008782.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_1739 peptidase S1C, Do; protease Do 3457858 4673502 Ajs_3271 Acidovorax sp. JS42 protease Do YP_987470.1 3456428 R 232721 CDS YP_987471.1 121595575 4673669 complement(3457998..3459023) 1 NC_008782.1 PFAM: MucB/RseB family protein; KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB; sigma E regulatory protein, MucB/RseB 3459023 4673669 Ajs_3272 Acidovorax sp. JS42 sigma E regulatory protein, MucB/RseB YP_987471.1 3457998 R 232721 CDS YP_987472.1 121595576 4673750 complement(3459089..3459712) 1 NC_008782.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: rfr:Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific; anti sigma-E protein RseA 3459712 4673750 Ajs_3273 Acidovorax sp. JS42 anti sigma-E protein RseA YP_987472.1 3459089 R 232721 CDS YP_987473.1 121595577 4673753 complement(3459753..3460388) 1 NC_008782.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 3460388 4673753 Ajs_3274 Acidovorax sp. JS42 RNA polymerase sigma factor RpoE YP_987473.1 3459753 R 232721 CDS YP_987474.1 121595578 4673767 complement(3460385..3460918) 1 NC_008782.1 KEGG: rfr:Rfer_1735 hypothetical protein; hypothetical protein 3460918 4673767 Ajs_3275 Acidovorax sp. JS42 hypothetical protein YP_987474.1 3460385 R 232721 CDS YP_987475.1 121595579 4673796 complement(3461010..3462254) 1 NC_008782.1 PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_1734 beta-ketoacyl synthase; 3-oxoacyl-[acyl-carrier-protein] synthase II 3462254 4673796 Ajs_3276 Acidovorax sp. JS42 3-oxoacyl-[acyl-carrier-protein] synthase II YP_987475.1 3461010 R 232721 CDS YP_987476.1 121595580 4673837 complement(3462312..3462551) 1 NC_008782.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 3462551 acpP 4673837 acpP Acidovorax sp. JS42 acyl carrier protein YP_987476.1 3462312 R 232721 CDS YP_987477.1 121595581 4674093 complement(3462655..3463395) 1 NC_008782.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1732 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-[acyl-carrier-protein] reductase 3463395 4674093 Ajs_3278 Acidovorax sp. JS42 3-oxoacyl-[acyl-carrier-protein] reductase YP_987477.1 3462655 R 232721 CDS YP_987478.1 121595582 4671491 complement(3463392..3464360) 1 NC_008782.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase; [acyl-carrier-protein] S-malonyltransferase 3464360 4671491 Ajs_3279 Acidovorax sp. JS42 [acyl-carrier-protein] S-malonyltransferase YP_987478.1 3463392 R 232721 CDS YP_987479.1 121595583 4674578 complement(3464402..3465379) 1 NC_008782.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 3465379 4674578 Ajs_3280 Acidovorax sp. JS42 3-oxoacyl-(acyl carrier protein) synthase III YP_987479.1 3464402 R 232721 CDS YP_987480.1 121595584 4674651 complement(3465398..3466429) 1 NC_008782.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 3466429 4674651 Ajs_3281 Acidovorax sp. JS42 putative glycerol-3-phosphate acyltransferase PlsX YP_987480.1 3465398 R 232721 CDS YP_987481.1 121595585 4674649 complement(3466552..3466734) 1 NC_008782.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3466734 rpmF 4674649 rpmF Acidovorax sp. JS42 50S ribosomal protein L32 YP_987481.1 3466552 R 232721 CDS YP_987482.1 121595586 4674632 complement(3466867..3467418) 1 NC_008782.1 PFAM: protein of unknown function DUF177; KEGG: rfr:Rfer_1727 protein of unknown function DUF177; hypothetical protein 3467418 4674632 Ajs_3283 Acidovorax sp. JS42 hypothetical protein YP_987482.1 3466867 R 232721 CDS YP_987483.1 121595587 4674613 3467445..3468044 1 NC_008782.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein; maf protein 3468044 4674613 Ajs_3284 Acidovorax sp. JS42 maf protein YP_987483.1 3467445 D 232721 CDS YP_987484.1 121595588 4674561 3468041..3468847 1 NC_008782.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3655 putative transmembrane protein; uroporphyrin-III C/tetrapyrrole methyltransferase 3468847 4674561 Ajs_3285 Acidovorax sp. JS42 uroporphyrin-III C/tetrapyrrole methyltransferase YP_987484.1 3468041 D 232721 CDS YP_987485.1 121595589 4674532 complement(3468932..3469975) 1 NC_008782.1 PFAM: peptidase S49; KEGG: rfr:Rfer_1724 peptidase S49; peptidase S49 3469975 4674532 Ajs_3286 Acidovorax sp. JS42 peptidase S49 YP_987485.1 3468932 R 232721 CDS YP_987486.1 121595590 4674497 complement(3469980..3470357) 1 NC_008782.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3470357 4674497 Ajs_3287 Acidovorax sp. JS42 Rieske (2Fe-2S) domain-containing protein YP_987486.1 3469980 R 232721 CDS YP_987487.1 121595591 4674461 complement(3470357..3471025) 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase 3471025 4674461 Ajs_3288 Acidovorax sp. JS42 HAD family hydrolase YP_987487.1 3470357 R 232721 CDS YP_987488.1 121595592 4674318 3472626..3475703 1 NC_008782.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family; ribonuclease E 3475703 4674318 Ajs_3290 Acidovorax sp. JS42 ribonuclease E YP_987488.1 3472626 D 232721 CDS YP_987489.1 121595593 4674234 3475845..3476633 1 NC_008782.1 PFAM: protein of unknown function DUF328; KEGG: rfr:Rfer_2372 protein of unknown function DUF328; hypothetical protein 3476633 4674234 Ajs_3291 Acidovorax sp. JS42 hypothetical protein YP_987489.1 3475845 D 232721 CDS YP_987490.1 121595594 4674173 3476665..3477051 1 NC_008782.1 hypothetical protein 3477051 4674173 Ajs_3292 Acidovorax sp. JS42 hypothetical protein YP_987490.1 3476665 D 232721 CDS YP_987491.1 121595595 4673306 3477074..3477943 1 NC_008782.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3712 procollagen-proline, 2-oxoglutarate-4-dioxygenase; 2OG-Fe(II) oxygenase 3477943 4673306 Ajs_3293 Acidovorax sp. JS42 2OG-Fe(II) oxygenase YP_987491.1 3477074 D 232721 CDS YP_987492.1 121595596 4673296 3478002..3478847 1 NC_008782.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3478847 queF 4673296 queF Acidovorax sp. JS42 7-cyano-7-deazaguanine reductase YP_987492.1 3478002 D 232721 CDS YP_987493.1 121595597 4673278 complement(3478963..3480522) 1 NC_008782.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: rfr:Rfer_0120 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer 3480522 4673278 Ajs_3295 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987493.1 3478963 R 232721 CDS YP_987494.1 121595598 4673269 complement(3480660..3481859) 1 NC_008782.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_2353 DNA-directed DNA polymerase; DNA-directed DNA polymerase 3481859 4673269 Ajs_3296 Acidovorax sp. JS42 DNA-directed DNA polymerase YP_987494.1 3480660 R 232721 CDS YP_987495.1 121595599 4673255 complement(3482034..3482969) 1 NC_008782.1 KEGG: nha:Nham_0475 hypothetical protein; hypothetical protein 3482969 4673255 Ajs_3297 Acidovorax sp. JS42 hypothetical protein YP_987495.1 3482034 R 232721 CDS YP_987496.1 121595600 4673225 complement(3483127..3484299) 1 NC_008782.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome); (S)-2-hydroxy-acid oxidase 3484299 4673225 Ajs_3298 Acidovorax sp. JS42 (S)-2-hydroxy-acid oxidase YP_987496.1 3483127 R 232721 CDS YP_987497.1 121595601 4672976 complement(3484522..3486798) 1 NC_008782.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: reu:Reut_A3383 penicillin-binding protein 1C; penicillin-binding protein 1C 3486798 4672976 Ajs_3299 Acidovorax sp. JS42 penicillin-binding protein 1C YP_987497.1 3484522 R 232721 CDS YP_987498.1 121595602 4672898 complement(3486770..3487642) 1 NC_008782.1 KEGG: bbr:BB2283 hypothetical protein; hypothetical protein 3487642 4672898 Ajs_3300 Acidovorax sp. JS42 hypothetical protein YP_987498.1 3486770 R 232721 CDS YP_987499.1 121595603 4672676 complement(3487721..3488098) 1 NC_008782.1 PFAM: protein of unknown function DUF1232; KEGG: gme:Gmet_2189 protein of unknown function DUF1232; hypothetical protein 3488098 4672676 Ajs_3301 Acidovorax sp. JS42 hypothetical protein YP_987499.1 3487721 R 232721 CDS YP_987500.1 121595604 4672699 3488243..3488458 1 NC_008782.1 KEGG: bps:BPSS1335 hypothetical protein; hypothetical protein 3488458 4672699 Ajs_3302 Acidovorax sp. JS42 hypothetical protein YP_987500.1 3488243 D 232721 CDS YP_987501.1 121595605 4672687 complement(3488471..3489346) 1 NC_008782.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein; endonuclease/exonuclease/phosphatase 3489346 4672687 Ajs_3303 Acidovorax sp. JS42 endonuclease/exonuclease/phosphatase YP_987501.1 3488471 R 232721 CDS YP_987502.1 121595606 4672748 complement(3489417..3490238) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4935 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport systems inner membrane component 3490238 4672748 Ajs_3304 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_987502.1 3489417 R 232721 CDS YP_987503.1 121595607 4672332 complement(3490386..3491288) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4934 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport systems inner membrane component 3491288 4672332 Ajs_3305 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_987503.1 3490386 R 232721 CDS YP_987504.1 121595608 4672016 complement(3491302..3492597) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bbr:BB4933 probable extracellular solute-binding protein; extracellular solute-binding protein 3492597 4672016 Ajs_3306 Acidovorax sp. JS42 extracellular solute-binding protein YP_987504.1 3491302 R 232721 CDS YP_987505.1 121595609 4672238 complement(3492691..3493731) 1 NC_008782.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bpe:BP0122 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 3493731 4672238 Ajs_3307 Acidovorax sp. JS42 ABC transporter-like protein YP_987505.1 3492691 R 232721 CDS YP_987506.1 121595610 4672196 complement(3494055..3496151) 1 NC_008782.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bps:BPSS1310 putative BCCT (betaine/carnitine/choline) family transporter; choline/carnitine/betaine transporter 3496151 4672196 Ajs_3308 Acidovorax sp. JS42 choline/carnitine/betaine transporter YP_987506.1 3494055 R 232721 CDS YP_987507.1 121595611 4671973 complement(3496696..3502764) 1 NC_008782.1 PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin domain-containing protein 3502764 4671973 Ajs_3309 Acidovorax sp. JS42 alpha-2-macroglobulin domain-containing protein YP_987507.1 3496696 R 232721 CDS YP_987508.1 121595612 4671474 3502946..3505054 1 NC_008782.1 PFAM: Catalase domain protein; KEGG: xac:XAC1211 catalase; catalase 3505054 4671474 Ajs_3310 Acidovorax sp. JS42 catalase YP_987508.1 3502946 D 232721 CDS YP_987509.1 121595613 4671444 complement(3505133..3506107) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065; hypothetical protein 3506107 4671444 Ajs_3311 Acidovorax sp. JS42 hypothetical protein YP_987509.1 3505133 R 232721 CDS YP_987510.1 121595614 4671568 complement(3506241..3507701) 1 NC_008782.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3507701 4671568 Ajs_3312 Acidovorax sp. JS42 argininosuccinate lyase YP_987510.1 3506241 R 232721 CDS YP_987511.1 121595615 4671554 3507751..3508818 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: rfr:Rfer_1711 histidine kinase internal protein; histidine kinase 3508818 4671554 Ajs_3313 Acidovorax sp. JS42 histidine kinase YP_987511.1 3507751 D 232721 CDS YP_987512.1 121595616 4670868 3508865..3509617 1 NC_008782.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family; LytR/AlgR family transcriptional regulator 3509617 4670868 Ajs_3314 Acidovorax sp. JS42 LytR/AlgR family transcriptional regulator YP_987512.1 3508865 D 232721 CDS YP_987513.1 121595617 4670829 complement(3509772..3510602) 1 NC_008782.1 PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease; zinc/iron permease 3510602 4670829 Ajs_3315 Acidovorax sp. JS42 zinc/iron permease YP_987513.1 3509772 R 232721 CDS YP_987514.1 121595618 4670516 complement(3510721..3511614) 1 NC_008782.1 PFAM: dienelactone hydrolase; KEGG: pol:Bpro_1733 carboxymethylenebutenolidase; carboxymethylenebutenolidase 3511614 4670516 Ajs_3316 Acidovorax sp. JS42 carboxymethylenebutenolidase YP_987514.1 3510721 R 232721 CDS YP_987515.1 121595619 4670632 complement(3511764..3514532) 1 NC_008782.1 KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I 3514532 4670632 Ajs_3317 Acidovorax sp. JS42 DNA polymerase I YP_987515.1 3511764 R 232721 CDS YP_987516.1 121595620 4674589 3514675..3515091 1 NC_008782.1 hypothetical protein 3515091 4674589 Ajs_3318 Acidovorax sp. JS42 hypothetical protein YP_987516.1 3514675 D 232721 CDS YP_987517.1 121595621 4674705 3515128..3515496 1 NC_008782.1 KEGG: pol:Bpro_1728 hypothetical protein; hypothetical protein 3515496 4674705 Ajs_3319 Acidovorax sp. JS42 hypothetical protein YP_987517.1 3515128 D 232721 CDS YP_987518.1 121595622 4670583 3515588..3516538 1 NC_008782.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 3516538 4670583 Ajs_3320 Acidovorax sp. JS42 homoserine kinase YP_987518.1 3515588 D 232721 CDS YP_987519.1 121595623 4671228 3516689..3517516 1 NC_008782.1 KEGG: pol:Bpro_1726 hypothetical protein; hypothetical protein 3517516 4671228 Ajs_3321 Acidovorax sp. JS42 hypothetical protein YP_987519.1 3516689 D 232721 CDS YP_987520.1 121595624 4670620 complement(3517815..3518486) 1 NC_008782.1 PFAM: OmpA/MotB domain protein; KEGG: gvi:glr1828 probable outer membrane protein; OmpA/MotB domain-containing protein 3518486 4670620 Ajs_3322 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_987520.1 3517815 R 232721 CDS YP_987521.1 121595625 4670645 complement(3518486..3519094) 1 NC_008782.1 KEGG: gvi:glr1827 unknown protein; hypothetical protein 3519094 4670645 Ajs_3323 Acidovorax sp. JS42 hypothetical protein YP_987521.1 3518486 R 232721 CDS YP_987522.1 121595626 4670774 complement(3519378..3521828) 1 NC_008782.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase; ATP-dependent DNA helicase UvrD 3521828 4670774 Ajs_3324 Acidovorax sp. JS42 ATP-dependent DNA helicase UvrD YP_987522.1 3519378 R 232721 CDS YP_987523.1 121595627 4670790 3521932..3522600 1 NC_008782.1 KEGG: rfr:Rfer_3036 hypothetical protein; hypothetical protein 3522600 4670790 Ajs_3325 Acidovorax sp. JS42 hypothetical protein YP_987523.1 3521932 D 232721 CDS YP_987524.1 121595628 4670813 3522792..3523769 1 NC_008782.1 TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: rfr:Rfer_3037 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase 3523769 4670813 Ajs_3326 Acidovorax sp. JS42 guanosine 5'-monophosphate oxidoreductase YP_987524.1 3522792 D 232721 CDS YP_987525.1 121595629 4670938 complement(3524913..3525644) 1 NC_008782.1 hypothetical protein 3525644 4670938 Ajs_3327 Acidovorax sp. JS42 hypothetical protein YP_987525.1 3524913 R 232721 CDS YP_987526.1 121595630 4671053 complement(3525699..3526145) 1 NC_008782.1 hypothetical protein 3526145 4671053 Ajs_3328 Acidovorax sp. JS42 hypothetical protein YP_987526.1 3525699 R 232721 CDS YP_987527.1 121595631 4671054 complement(3526296..3526607) 1 NC_008782.1 KEGG: son:SO4261 hypothetical protein; hypothetical protein 3526607 4671054 Ajs_3329 Acidovorax sp. JS42 hypothetical protein YP_987527.1 3526296 R 232721 CDS YP_987528.1 121595632 4671063 complement(3526618..3527085) 1 NC_008782.1 hypothetical protein 3527085 4671063 Ajs_3330 Acidovorax sp. JS42 hypothetical protein YP_987528.1 3526618 R 232721 CDS YP_987529.1 121595633 4671107 3527572..3528660 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3528660 4671107 Ajs_3331 Acidovorax sp. JS42 transposase, IS4 family protein YP_987529.1 3527572 D 232721 CDS YP_987530.1 121595634 4671150 complement(3528800..3529222) 1 NC_008782.1 KEGG: bps:BPSL1146 hypothetical protein; hypothetical protein 3529222 4671150 Ajs_3332 Acidovorax sp. JS42 hypothetical protein YP_987530.1 3528800 R 232721 CDS YP_987531.1 121595635 4674215 complement(3529215..3529529) 1 NC_008782.1 hypothetical protein 3529529 4674215 Ajs_3333 Acidovorax sp. JS42 hypothetical protein YP_987531.1 3529215 R 232721 CDS YP_987532.1 121595636 4670586 complement(3529526..3530113) 1 NC_008782.1 hypothetical protein 3530113 4670586 Ajs_3334 Acidovorax sp. JS42 hypothetical protein YP_987532.1 3529526 R 232721 CDS YP_987533.1 121595637 4671639 complement(3530091..3530276) 1 NC_008782.1 KEGG: eba:ebD32 hypothetical protein; hypothetical protein 3530276 4671639 Ajs_3335 Acidovorax sp. JS42 hypothetical protein YP_987533.1 3530091 R 232721 CDS YP_987534.1 121595638 4671685 complement(3530276..3530521) 1 NC_008782.1 KEGG: pol:Bpro_1532 hypothetical protein; hypothetical protein 3530521 4671685 Ajs_3336 Acidovorax sp. JS42 hypothetical protein YP_987534.1 3530276 R 232721 CDS YP_987535.1 121595639 4671686 complement(3530670..3531491) 1 NC_008782.1 hypothetical protein 3531491 4671686 Ajs_3337 Acidovorax sp. JS42 hypothetical protein YP_987535.1 3530670 R 232721 CDS YP_987536.1 121595640 4671749 complement(3531593..3531874) 1 NC_008782.1 KEGG: bbr:BB1688 hypothetical protein; hypothetical protein 3531874 4671749 Ajs_3338 Acidovorax sp. JS42 hypothetical protein YP_987536.1 3531593 R 232721 CDS YP_987537.1 121595641 4671509 complement(3531861..3532139) 1 NC_008782.1 PFAM: protein of unknown function DUF497; KEGG: bbr:BB1689 hypothetical protein; hypothetical protein 3532139 4671509 Ajs_3339 Acidovorax sp. JS42 hypothetical protein YP_987537.1 3531861 R 232721 CDS YP_987538.1 121595642 4671826 complement(3532196..3533554) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: bcn:Bcen_0845 phage integrase; phage integrase family protein 3533554 4671826 Ajs_3340 Acidovorax sp. JS42 phage integrase family protein YP_987538.1 3532196 R 232721 CDS YP_987539.1 121595643 4671913 3534001..3534666 1 NC_008782.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: eca:ECA1829 putative Crp/Fnr-family of transcriptional regulator; Crp/FNR family transcriptional regulator 3534666 4671913 Ajs_3341 Acidovorax sp. JS42 Crp/FNR family transcriptional regulator YP_987539.1 3534001 D 232721 CDS YP_987540.1 121595644 4671878 3534690..3535136 1 NC_008782.1 KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein 3535136 4671878 Ajs_3342 Acidovorax sp. JS42 hypothetical protein YP_987540.1 3534690 D 232721 CDS YP_987541.1 121595645 4674354 3535230..3535718 1 NC_008782.1 PFAM: protein of unknown function DUF461; KEGG: eba:ebA6147 hypothetical protein; hypothetical protein 3535718 4674354 Ajs_3343 Acidovorax sp. JS42 hypothetical protein YP_987541.1 3535230 D 232721 CDS YP_987542.1 121595646 4674340 3535899..3537134 1 NC_008782.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3537134 4674340 Ajs_3344 Acidovorax sp. JS42 Bcr/CflA subfamily drug resistance transporter YP_987542.1 3535899 D 232721 CDS YP_987543.1 121595647 4674096 complement(3537411..3539288) 1 NC_008782.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 3539288 4674096 Ajs_3345 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_987543.1 3537411 R 232721 CDS YP_987544.1 121595648 4674185 complement(3539571..3540149) 1 NC_008782.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 3540149 4674185 Ajs_3346 Acidovorax sp. JS42 oligoribonuclease YP_987544.1 3539571 R 232721 CDS YP_987545.1 121595649 4672528 3540188..3541501 1 NC_008782.1 PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase; Ste24 endopeptidase 3541501 4672528 Ajs_3347 Acidovorax sp. JS42 Ste24 endopeptidase YP_987545.1 3540188 D 232721 CDS YP_987546.1 121595650 4672592 3541498..3541836 1 NC_008782.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase 3541836 4672592 Ajs_3348 Acidovorax sp. JS42 pterin-4-alpha-carbinolamine dehydratase YP_987546.1 3541498 D 232721 CDS YP_987547.1 121595651 4672075 3541841..3542809 1 NC_008782.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rfr:Rfer_1409 GTPase EngC; ribosome small subunit-dependent GTPase A 3542809 4672075 Ajs_3349 Acidovorax sp. JS42 ribosome small subunit-dependent GTPase A YP_987547.1 3541841 D 232721 CDS YP_987548.1 121595652 4671919 complement(3542875..3543861) 1 NC_008782.1 PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_1695 hypothetical protein; cobalamin biosynthesis protein CbiB 3543861 4671919 Ajs_3350 Acidovorax sp. JS42 cobalamin biosynthesis protein CbiB YP_987548.1 3542875 R 232721 CDS YP_987549.1 121595653 4671891 complement(3543940..3544674) 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1406 NUDIX hydrolase; NUDIX hydrolase 3544674 4671891 Ajs_3351 Acidovorax sp. JS42 NUDIX hydrolase YP_987549.1 3543940 R 232721 CDS YP_987550.1 121595654 4672134 complement(3544742..3545125) 1 NC_008782.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3545125 rplS 4672134 rplS Acidovorax sp. JS42 50S ribosomal protein L19 YP_987550.1 3544742 R 232721 CDS YP_987551.1 121595655 4672279 complement(3545239..3546006) 1 NC_008782.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3546006 trmD 4672279 trmD Acidovorax sp. JS42 tRNA (guanine-N(1)-)-methyltransferase YP_987551.1 3545239 R 232721 CDS YP_987552.1 121595656 4672345 complement(3546025..3546654) 1 NC_008782.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3546654 rimM 4672345 rimM Acidovorax sp. JS42 16S rRNA-processing protein RimM YP_987552.1 3546025 R 232721 CDS YP_987553.1 121595657 4672359 complement(3546686..3546937) 1 NC_008782.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3546937 rpsP 4672359 rpsP Acidovorax sp. JS42 30S ribosomal protein S16 YP_987553.1 3546686 R 232721 CDS YP_987554.1 121595658 4672369 3547065..3547586 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3547586 4672369 Ajs_3356 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_987554.1 3547065 D 232721 CDS YP_987555.1 121595659 4672373 3547609..3548055 1 NC_008782.1 KEGG: rfr:Rfer_1400 hypothetical protein; hypothetical protein 3548055 4672373 Ajs_3357 Acidovorax sp. JS42 hypothetical protein YP_987555.1 3547609 D 232721 CDS YP_987556.1 121595660 4672038 complement(3548192..3549202) 1 NC_008782.1 PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter; phosphate transporter 3549202 4672038 Ajs_3358 Acidovorax sp. JS42 phosphate transporter YP_987556.1 3548192 R 232721 CDS YP_987557.1 121595661 4672400 complement(3549262..3549909) 1 NC_008782.1 PFAM: protein of unknown function DUF47; KEGG: rfr:Rfer_1398 protein of unknown function DUF47; hypothetical protein 3549909 4672400 Ajs_3359 Acidovorax sp. JS42 hypothetical protein YP_987557.1 3549262 R 232721 CDS YP_987558.1 121595662 4672593 complement(3550081..3550443) 1 NC_008782.1 PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486; hypothetical protein 3550443 4672593 Ajs_3360 Acidovorax sp. JS42 hypothetical protein YP_987558.1 3550081 R 232721 CDS YP_987559.1 121595663 4672707 complement(3550563..3551291) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related; ABC transporter-like protein 3551291 4672707 Ajs_3361 Acidovorax sp. JS42 ABC transporter-like protein YP_987559.1 3550563 R 232721 CDS YP_987560.1 121595664 4672538 complement(3551304..3552086) 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3170 ABC transporter related; ABC transporter-like protein 3552086 4672538 Ajs_3362 Acidovorax sp. JS42 ABC transporter-like protein YP_987560.1 3551304 R 232721 CDS YP_987561.1 121595665 4672808 complement(3552108..3553184) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3171 inner-membrane translocator; inner-membrane translocator 3553184 4672808 Ajs_3363 Acidovorax sp. JS42 inner-membrane translocator YP_987561.1 3552108 R 232721 CDS YP_987562.1 121595666 4672815 complement(3553198..3554127) 1 NC_008782.1 PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3172 inner-membrane translocator; inner-membrane translocator 3554127 4672815 Ajs_3364 Acidovorax sp. JS42 inner-membrane translocator YP_987562.1 3553198 R 232721 CDS YP_987563.1 121595667 4672865 complement(3554484..3555812) 1 NC_008782.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3176 AAA ATPase; recombination factor protein RarA 3555812 4672865 Ajs_3365 Acidovorax sp. JS42 recombination factor protein RarA YP_987563.1 3554484 R 232721 CDS YP_987564.1 121595668 4672911 complement(3555809..3556807) 1 NC_008782.1 TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: tbd:Tbd_1215 integron integrase; integron integrase 3556807 4672911 Ajs_3366 Acidovorax sp. JS42 integron integrase YP_987564.1 3555809 R 232721 CDS YP_987565.1 121595669 4672958 3556965..3557945 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3557945 4672958 Ajs_3367 Acidovorax sp. JS42 transposase, IS4 family protein YP_987565.1 3556965 D 232721 CDS YP_987566.1 121595670 4673012 3558135..3558434 1 NC_008782.1 PFAM: protein of unknown function DUF1010; hypothetical protein 3558434 4673012 Ajs_3368 Acidovorax sp. JS42 hypothetical protein YP_987566.1 3558135 D 232721 CDS YP_987567.1 121595671 4673020 3558444..3558713 1 NC_008782.1 hypothetical protein 3558713 4673020 Ajs_3369 Acidovorax sp. JS42 hypothetical protein YP_987567.1 3558444 D 232721 CDS YP_987568.1 121595672 4673044 3559013..3560239 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3560239 4673044 Ajs_3370 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987568.1 3559013 D 232721 CDS YP_987569.1 121595673 4673063 3560381..3560638 1 NC_008782.1 hypothetical protein 3560638 4673063 Ajs_3371 Acidovorax sp. JS42 hypothetical protein YP_987569.1 3560381 D 232721 CDS YP_987570.1 121595674 4674525 3560707..3560952 1 NC_008782.1 PFAM: protein of unknown function DUF1010; hypothetical protein 3560952 4674525 Ajs_3372 Acidovorax sp. JS42 hypothetical protein YP_987570.1 3560707 D 232721 CDS YP_987571.1 121595675 4673140 3560969..3561250 1 NC_008782.1 PFAM: protein of unknown function DUF1010; hypothetical protein 3561250 4673140 Ajs_3373 Acidovorax sp. JS42 hypothetical protein YP_987571.1 3560969 D 232721 CDS YP_987572.1 121595676 4673161 3561462..3562688 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3562688 4673161 Ajs_3374 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987572.1 3561462 D 232721 CDS YP_987573.1 121595677 4673363 complement(3563865..3565091) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3565091 4673363 Ajs_3377 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987573.1 3563865 R 232721 CDS YP_987574.1 121595678 4673467 complement(3565486..3566712) 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3566712 4673467 Ajs_3378 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987574.1 3565486 R 232721 CDS YP_987575.1 121595679 4673487 3567122..3567511 1 NC_008782.1 KEGG: eba:ebA2554 hypothetical protein; hypothetical protein 3567511 4673487 Ajs_3379 Acidovorax sp. JS42 hypothetical protein YP_987575.1 3567122 D 232721 CDS YP_987576.1 121595680 4673497 3567511..3568176 1 NC_008782.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: bte:BTH_II0381 uracil DNA glycosylase superfamily superfamily; uracil-DNA glycosylase superfamily protein 3568176 4673497 Ajs_3380 Acidovorax sp. JS42 uracil-DNA glycosylase superfamily protein YP_987576.1 3567511 D 232721 CDS YP_987577.1 121595681 4673576 complement(3568237..3568869) 1 NC_008782.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3568869 4673576 Ajs_3381 Acidovorax sp. JS42 outer membrane lipoprotein carrier protein LolA YP_987577.1 3568237 R 232721 CDS YP_987578.1 121595682 4673580 complement(3568931..3571261) 1 NC_008782.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE; DNA translocase FtsK 3571261 4673580 Ajs_3382 Acidovorax sp. JS42 DNA translocase FtsK YP_987578.1 3568931 R 232721 CDS YP_987579.1 121595683 4673638 3571554..3572507 1 NC_008782.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3179 thioredoxin reductase; thioredoxin reductase 3572507 4673638 Ajs_3383 Acidovorax sp. JS42 thioredoxin reductase YP_987579.1 3571554 D 232721 CDS YP_987580.1 121595684 4673714 3572741..3572974 1 NC_008782.1 required for 70S ribosome assembly; 50S ribosomal protein L28 3572974 rpmB 4673714 rpmB Acidovorax sp. JS42 50S ribosomal protein L28 YP_987580.1 3572741 D 232721 CDS YP_987581.1 121595685 4673719 3572995..3573165 1 NC_008782.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3573165 rpmG 4673719 rpmG Acidovorax sp. JS42 50S ribosomal protein L33 YP_987581.1 3572995 D 232721 CDS YP_987582.1 121595686 4673914 complement(3573304..3574515) 1 NC_008782.1 PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase; fatty acid desaturase 3574515 4673914 Ajs_3386 Acidovorax sp. JS42 fatty acid desaturase YP_987582.1 3573304 R 232721 CDS YP_987583.1 121595687 4673989 complement(3574648..3575925) 1 NC_008782.1 PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3183 Fmu (Sun); Fmu (Sun) domain-containing protein 3575925 4673989 Ajs_3387 Acidovorax sp. JS42 Fmu (Sun) domain-containing protein YP_987583.1 3574648 R 232721 CDS YP_987584.1 121595688 4673855 complement(3575969..3577906) 1 NC_008782.1 PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p; peptidase M48, Ste24p 3577906 4673855 Ajs_3388 Acidovorax sp. JS42 peptidase M48, Ste24p YP_987584.1 3575969 R 232721 CDS YP_987585.1 121595689 4673954 3577948..3578205 1 NC_008782.1 PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653; hypothetical protein 3578205 4673954 Ajs_3389 Acidovorax sp. JS42 hypothetical protein YP_987585.1 3577948 D 232721 CDS YP_987586.1 121595690 4674002 3578414..3578971 1 NC_008782.1 KEGG: tbd:Tbd_2249 hypothetical protein; hypothetical protein 3578971 4674002 Ajs_3390 Acidovorax sp. JS42 hypothetical protein YP_987586.1 3578414 D 232721 CDS YP_987587.1 121595691 4673865 complement(3579036..3579620) 1 NC_008782.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3579620 purN 4673865 purN Acidovorax sp. JS42 phosphoribosylglycinamide formyltransferase YP_987587.1 3579036 R 232721 CDS YP_987588.1 121595692 4674115 3579644..3580321 1 NC_008782.1 PFAM: protein of unknown function DUF480; KEGG: rfr:Rfer_1648 protein of unknown function DUF480; hypothetical protein 3580321 4674115 Ajs_3392 Acidovorax sp. JS42 hypothetical protein YP_987588.1 3579644 D 232721 CDS YP_987589.1 121595693 4674124 3580409..3581590 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3581590 4674124 Ajs_3393 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987589.1 3580409 D 232721 CDS YP_987590.1 121595694 4674148 3581603..3582718 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_1645 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3582718 4674148 Ajs_3394 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987590.1 3581603 D 232721 CDS YP_987591.1 121595695 4674098 3583117..3584103 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3584103 4674098 Ajs_3395 Acidovorax sp. JS42 transposase, IS4 family protein YP_987591.1 3583117 D 232721 CDS YP_987592.1 121595696 4674110 3584263..3585582 1 NC_008782.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC4125 hypothetical protein; type 12 methyltransferase 3585582 4674110 Ajs_3396 Acidovorax sp. JS42 type 12 methyltransferase YP_987592.1 3584263 D 232721 CDS YP_987593.1 121595697 4674100 complement(3585646..3586203) 1 NC_008782.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease; HNH endonuclease 3586203 4674100 Ajs_3397 Acidovorax sp. JS42 HNH endonuclease YP_987593.1 3585646 R 232721 CDS YP_987594.1 121595698 4674077 3586366..3587409 1 NC_008782.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 3587409 4674077 Ajs_3398 Acidovorax sp. JS42 bifunctional riboflavin kinase/FMN adenylyltransferase YP_987594.1 3586366 D 232721 CDS YP_987595.1 121595699 4674091 3587524..3590379 1 NC_008782.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3590379 4674091 Ajs_3399 Acidovorax sp. JS42 isoleucyl-tRNA synthetase YP_987595.1 3587524 D 232721 CDS YP_987596.1 121595700 4674083 3590379..3590876 1 NC_008782.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3590876 lspA 4674083 lspA Acidovorax sp. JS42 lipoprotein signal peptidase YP_987596.1 3590379 D 232721 CDS YP_987597.1 121595701 4674067 3590971..3592641 1 NC_008782.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related; Na/Pi-cotransporter II-like protein 3592641 4674067 Ajs_3401 Acidovorax sp. JS42 Na/Pi-cotransporter II-like protein YP_987597.1 3590971 D 232721 CDS YP_987598.1 121595702 4674052 complement(3592632..3593621) 1 NC_008782.1 KEGG: pae:PA2026 conserved hypothetical protein; hypothetical protein 3593621 4674052 Ajs_3402 Acidovorax sp. JS42 hypothetical protein YP_987598.1 3592632 R 232721 CDS YP_987599.1 121595703 4674031 3594079..3595305 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3595305 4674031 Ajs_3403 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987599.1 3594079 D 232721 CDS YP_987600.1 121595704 4674707 complement(3595453..3596274) 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3852 NUDIX hydrolase; NUDIX hydrolase 3596274 4674707 Ajs_3404 Acidovorax sp. JS42 NUDIX hydrolase YP_987600.1 3595453 R 232721 CDS YP_987601.1 121595705 4674670 3597389..3598291 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane; hypothetical protein 3598291 4674670 Ajs_3406 Acidovorax sp. JS42 hypothetical protein YP_987601.1 3597389 D 232721 CDS YP_987602.1 121595706 4674642 complement(3601000..3602082) 1 NC_008782.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1428 putative transport protein; TRAP dicarboxylate transporter subunit DctP 3602082 4674642 Ajs_3408 Acidovorax sp. JS42 TRAP dicarboxylate transporter subunit DctP YP_987602.1 3601000 R 232721 CDS YP_987603.1 121595707 4674624 3602540..3603628 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3603628 4674624 Ajs_3410 Acidovorax sp. JS42 transposase, IS4 family protein YP_987603.1 3602540 D 232721 CDS YP_987604.1 121595708 4674621 complement(3605044..3606555) 1 NC_008782.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane; hypothetical protein 3606555 4674621 Ajs_3411 Acidovorax sp. JS42 hypothetical protein YP_987604.1 3605044 R 232721 CDS YP_987605.1 121595709 4674615 complement(3606572..3607060) 1 NC_008782.1 PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468; hypothetical protein 3607060 4674615 Ajs_3412 Acidovorax sp. JS42 hypothetical protein YP_987605.1 3606572 R 232721 CDS YP_987606.1 121595710 4674607 complement(3607362..3609158) 1 NC_008782.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E; type II secretion system protein E 3609158 4674607 Ajs_3413 Acidovorax sp. JS42 type II secretion system protein E YP_987606.1 3607362 R 232721 CDS YP_987607.1 121595711 4674608 complement(3609179..3609940) 1 NC_008782.1 KEGG: rfr:Rfer_3215 hypothetical protein; hypothetical protein 3609940 4674608 Ajs_3414 Acidovorax sp. JS42 hypothetical protein YP_987607.1 3609179 R 232721 CDS YP_987608.1 121595712 4674599 complement(3609945..3610568) 1 NC_008782.1 KEGG: rfr:Rfer_3216 hypothetical protein; hypothetical protein 3610568 4674599 Ajs_3415 Acidovorax sp. JS42 hypothetical protein YP_987608.1 3609945 R 232721 CDS YP_987609.1 121595713 4674602 complement(3610575..3611420) 1 NC_008782.1 PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_3221 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease 3611420 4674602 Ajs_3416 Acidovorax sp. JS42 TatD-like deoxyribonuclease YP_987609.1 3610575 R 232721 CDS YP_987610.1 121595714 4674323 complement(3611530..3611727) 1 NC_008782.1 KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein 3611727 4674323 Ajs_3417 Acidovorax sp. JS42 hypothetical protein YP_987610.1 3611530 R 232721 CDS YP_987611.1 121595715 4674591 complement(3611783..3612091) 1 NC_008782.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR; transcriptional regulator TrmB; KEGG: eca:ECA3780 ArsR-family transcriptional regulator; ArsR family transcriptional regulator 3612091 4674591 Ajs_3418 Acidovorax sp. JS42 ArsR family transcriptional regulator YP_987611.1 3611783 R 232721 CDS YP_987612.1 121595716 4674596 3612205..3612576 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_2368 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3612576 4674596 Ajs_3419 Acidovorax sp. JS42 alkylhydroperoxidase YP_987612.1 3612205 D 232721 CDS YP_987613.1 121595717 4674593 complement(3612632..3613312) 1 NC_008782.1 KEGG: pol:Bpro_1015 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system ATP-binding protein 3613312 4674593 Ajs_3420 Acidovorax sp. JS42 lipoprotein releasing system ATP-binding protein YP_987613.1 3612632 R 232721 CDS YP_987614.1 121595718 4674588 complement(3613305..3614558) 1 NC_008782.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein 3614558 4674588 Ajs_3421 Acidovorax sp. JS42 LolC/E family lipoprotein releasing system, transmembrane protein YP_987614.1 3613305 R 232721 CDS YP_987615.1 121595719 4674579 complement(3614696..3615886) 1 NC_008782.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3615886 4674579 Ajs_3422 Acidovorax sp. JS42 glycerophosphoryl diester phosphodiesterase YP_987615.1 3614696 R 232721 CDS YP_987616.1 121595720 4674567 3616003..3616959 1 NC_008782.1 KEGG: rfr:Rfer_3233 hypothetical protein; hypothetical protein 3616959 4674567 Ajs_3423 Acidovorax sp. JS42 hypothetical protein YP_987616.1 3616003 D 232721 CDS YP_987617.1 121595721 4674555 3616956..3618680 1 NC_008782.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rfr:Rfer_3234 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3618680 4674555 Ajs_3424 Acidovorax sp. JS42 single-stranded-DNA-specific exonuclease RecJ YP_987617.1 3616956 D 232721 CDS YP_987618.1 121595722 4674514 3618775..3619077 1 NC_008782.1 KEGG: eca:ECA4460 putative lipoprotein; putative lipoprotein 3619077 4674514 Ajs_3425 Acidovorax sp. JS42 putative lipoprotein YP_987618.1 3618775 D 232721 CDS YP_987619.1 121595723 4674539 complement(3619206..3620186) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3620186 4674539 Ajs_3426 Acidovorax sp. JS42 transposase, IS4 family protein YP_987619.1 3619206 R 232721 CDS YP_987620.1 121595724 4674432 3620641..3621018 1 NC_008782.1 KEGG: bte:BTH_I3205 hypothetical protein; hypothetical protein 3621018 4674432 Ajs_3428 Acidovorax sp. JS42 hypothetical protein YP_987620.1 3620641 D 232721 CDS YP_987621.1 121595725 4674527 3621015..3621689 1 NC_008782.1 PFAM: protein of unknown function DUF799; KEGG: psp:PSPPH_1127 lipoprotein, putative; hypothetical protein 3621689 4674527 Ajs_3429 Acidovorax sp. JS42 hypothetical protein YP_987621.1 3621015 D 232721 CDS YP_987622.1 121595726 4674511 complement(3621796..3623550) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3623550 4674511 Ajs_3430 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987622.1 3621796 R 232721 CDS YP_987623.1 121595727 4674499 3623754..3624632 1 NC_008782.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like; phosphotransferase domain-containing protein 3624632 4674499 Ajs_3431 Acidovorax sp. JS42 phosphotransferase domain-containing protein YP_987623.1 3623754 D 232721 CDS YP_987624.1 121595728 4674476 3624648..3625283 1 NC_008782.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: rfr:Rfer_3238 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 3625283 4674476 Ajs_3432 Acidovorax sp. JS42 Sua5/YciO/YrdC/YwlC family protein YP_987624.1 3624648 D 232721 CDS YP_987625.1 121595729 4674446 complement(3625408..3627477) 1 NC_008782.1 PFAM: von Willebrand factor, type A; KEGG: nmu:Nmul_A1253 von Willebrand factor, type A; von Willebrand factor, type A 3627477 4674446 Ajs_3433 Acidovorax sp. JS42 von Willebrand factor, type A YP_987625.1 3625408 R 232721 CDS YP_987626.1 121595730 4674444 complement(3627480..3628283) 1 NC_008782.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: nmu:Nmul_A1254 ATPase associated with various cellular activities, AAA_5; ATPase 3628283 4674444 Ajs_3434 Acidovorax sp. JS42 ATPase YP_987626.1 3627480 R 232721 CDS YP_987627.1 121595731 4674443 complement(3628303..3629676) 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit I; KEGG: tbd:Tbd_0823 nitric-oxide reductase subunit B; cytochrome c oxidase subunit I 3629676 4674443 Ajs_3435 Acidovorax sp. JS42 cytochrome c oxidase subunit I YP_987627.1 3628303 R 232721 CDS YP_987628.1 121595732 4674427 complement(3629707..3630579) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: tbd:Tbd_0822 nitric oxide reductase, cytochrome c-containing subunit; class I cytochrome c 3630579 4674427 Ajs_3436 Acidovorax sp. JS42 class I cytochrome c YP_987628.1 3629707 R 232721 CDS YP_987629.1 121595733 4674413 3630852..3631538 1 NC_008782.1 PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50; peptidase M50 3631538 4674413 Ajs_3437 Acidovorax sp. JS42 peptidase M50 YP_987629.1 3630852 D 232721 CDS YP_987630.1 121595734 4674398 3631563..3632867 1 NC_008782.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3632867 4674398 Ajs_3438 Acidovorax sp. JS42 tryptophanyl-tRNA synthetase YP_987630.1 3631563 D 232721 CDS YP_987631.1 121595735 4674396 3633155..3633439 1 NC_008782.1 hypothetical protein 3633439 4674396 Ajs_3439 Acidovorax sp. JS42 hypothetical protein YP_987631.1 3633155 D 232721 CDS YP_987632.1 121595736 4674362 3634290..3635516 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3635516 4674362 Ajs_3441 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_987632.1 3634290 D 232721 CDS YP_987633.1 121595737 4674360 complement(3636367..3637131) 1 NC_008782.1 PFAM: EAL domain protein; KEGG: pfl:PFL_0280 EAL domain protein; diguanylate phosphodiesterase 3637131 4674360 Ajs_3442 Acidovorax sp. JS42 diguanylate phosphodiesterase YP_987633.1 3636367 R 232721 CDS YP_987634.1 121595738 4674359 3637389..3637955 1 NC_008782.1 KEGG: net:Neut_0367 hypothetical protein; hypothetical protein 3637955 4674359 Ajs_3444 Acidovorax sp. JS42 hypothetical protein YP_987634.1 3637389 D 232721 CDS YP_987635.1 121595739 4674357 complement(3638504..3639832) 1 NC_008782.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 3639832 4674357 Ajs_3445 Acidovorax sp. JS42 seryl-tRNA synthetase YP_987635.1 3638504 R 232721 CDS YP_987636.1 121595740 4674291 3639965..3640645 1 NC_008782.1 PFAM: CBS domain containing protein; KEGG: rfr:Rfer_1632 CBS domain containing membrane protein; signal transduction protein 3640645 4674291 Ajs_3446 Acidovorax sp. JS42 signal transduction protein YP_987636.1 3639965 D 232721 CDS YP_987637.1 121595741 4674329 complement(3640649..3641971) 1 NC_008782.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rme:Rmet_4765 protein of unknown function DUF21; hypothetical protein 3641971 4674329 Ajs_3447 Acidovorax sp. JS42 hypothetical protein YP_987637.1 3640649 R 232721 CDS YP_987638.1 121595742 4674325 complement(3642221..3643216) 1 NC_008782.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3643216 ispH 4674325 ispH Acidovorax sp. JS42 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_987638.1 3642221 R 232721 CDS YP_987639.1 121595743 4674319 complement(3643230..3643607) 1 NC_008782.1 KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 3643607 4674319 Ajs_3449 Acidovorax sp. JS42 FKBP-type peptidylprolyl isomerase YP_987639.1 3643230 R 232721 CDS YP_987640.1 121595744 4674175 3643789..3644505 1 NC_008782.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3644505 radC 4674175 radC Acidovorax sp. JS42 DNA repair protein RadC YP_987640.1 3643789 D 232721 CDS YP_987641.1 121595745 4674305 3644502..3645716 1 NC_008782.1 KEGG: gvi:gll2885 hypothetical protein; hypothetical protein 3645716 4674305 Ajs_3451 Acidovorax sp. JS42 hypothetical protein YP_987641.1 3644502 D 232721 CDS YP_987642.1 121595746 4674158 3645689..3646372 1 NC_008782.1 PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 3646372 4674158 Ajs_3452 Acidovorax sp. JS42 Smr protein/MutS2 YP_987642.1 3645689 D 232721 CDS YP_987643.1 121595747 4674312 complement(3646507..3648588) 1 NC_008782.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bte:BTH_I0372 2',3'-cyclic-nucleotide 2'-phosphodiesterase; 5'-nucleotidase domain-containing protein 3648588 4674312 Ajs_3453 Acidovorax sp. JS42 5'-nucleotidase domain-containing protein YP_987643.1 3646507 R 232721 CDS YP_987644.1 121595748 4674303 complement(3648727..3649152) 1 NC_008782.1 PFAM: globin; KEGG: pol:Bpro_0945 globin; globin 3649152 4674303 Ajs_3454 Acidovorax sp. JS42 globin YP_987644.1 3648727 R 232721 CDS YP_987645.1 121595749 4674298 complement(3649189..3649641) 1 NC_008782.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3649641 4674298 Ajs_3455 Acidovorax sp. JS42 TraR/DksA family transcriptional regulator YP_987645.1 3649189 R 232721 CDS YP_987646.1 121595750 4674014 complement(3649619..3651190) 1 NC_008782.1 KEGG: nmu:Nmul_A0912 hypothetical protein; hypothetical protein 3651190 4674014 Ajs_3456 Acidovorax sp. JS42 hypothetical protein YP_987646.1 3649619 R 232721 CDS YP_987647.1 121595751 4674106 complement(3651236..3651463) 1 NC_008782.1 hypothetical protein 3651463 4674106 Ajs_3457 Acidovorax sp. JS42 hypothetical protein YP_987647.1 3651236 R 232721 CDS YP_987648.1 121595752 4674045 complement(3651472..3654045) 1 NC_008782.1 PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3255 protein of unknown function DUF214; hypothetical protein 3654045 4674045 Ajs_3458 Acidovorax sp. JS42 hypothetical protein YP_987648.1 3651472 R 232721 CDS YP_987649.1 121595753 4674019 complement(3654119..3655009) 1 NC_008782.1 PFAM: formate dehydrogenase, subunit FdhD; KEGG: rfr:Rfer_3256 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD 3655009 4674019 Ajs_3459 Acidovorax sp. JS42 formate dehydrogenase subunit FdhD YP_987649.1 3654119 R 232721 CDS YP_987650.1 121595754 4674054 complement(3655126..3655518) 1 NC_008782.1 KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein 3655518 4674054 Ajs_3460 Acidovorax sp. JS42 hypothetical protein YP_987650.1 3655126 R 232721 CDS YP_987651.1 121595755 4674079 complement(3655515..3656720) 1 NC_008782.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bbr:BB2124 formate dehydrogenase subunit C precursor; formate dehydrogenase subunit gamma 3656720 4674079 Ajs_3461 Acidovorax sp. JS42 formate dehydrogenase subunit gamma YP_987651.1 3655515 R 232721 CDS YP_987652.1 121595756 4674281 complement(3656734..3656967) 1 NC_008782.1 KEGG: pol:Bpro_0939 putative lipoprotein; putative lipoprotein 3656967 4674281 Ajs_3462 Acidovorax sp. JS42 putative lipoprotein YP_987652.1 3656734 R 232721 CDS YP_987653.1 121595757 4674296 complement(3656964..3657584) 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 3657584 4674296 Ajs_3463 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_987653.1 3656964 R 232721 CDS YP_987654.1 121595758 4674287 complement(3657595..3660564) 1 NC_008782.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3261 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 3660564 4674287 Ajs_3464 Acidovorax sp. JS42 molybdopterin oxidoreductase YP_987654.1 3657595 R 232721 CDS YP_987655.1 121595759 4674104 3660619..3660849 1 NC_008782.1 hypothetical protein 3660849 4674104 Ajs_3465 Acidovorax sp. JS42 hypothetical protein YP_987655.1 3660619 D 232721 CDS YP_987656.1 121595760 4674290 complement(3660973..3661611) 1 NC_008782.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: rfr:Rfer_3263 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 3661611 4674290 Ajs_3466 Acidovorax sp. JS42 cytoplasmic chaperone TorD family protein YP_987656.1 3660973 R 232721 CDS YP_987657.1 121595761 4674280 complement(3661608..3663707) 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB2119 putative iron-sulfur binding protein; 4Fe-4S ferredoxin 3663707 4674280 Ajs_3467 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_987657.1 3661608 R 232721 CDS YP_987658.1 121595762 4674278 complement(3663631..3664314) 1 NC_008782.1 KEGG: rfr:Rfer_3265 hypothetical protein; hypothetical protein 3664314 4674278 Ajs_3468 Acidovorax sp. JS42 hypothetical protein YP_987658.1 3663631 R 232721 CDS YP_987659.1 121595763 4674273 complement(3664307..3664888) 1 NC_008782.1 KEGG: pol:Bpro_0932 hypothetical protein; hypothetical protein 3664888 4674273 Ajs_3469 Acidovorax sp. JS42 hypothetical protein YP_987659.1 3664307 R 232721 CDS YP_987660.1 121595764 4674265 complement(3664910..3667801) 1 NC_008782.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3269 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 3667801 4674265 Ajs_3470 Acidovorax sp. JS42 formate dehydrogenase subunit alpha YP_987660.1 3664910 R 232721 CDS YP_987661.1 121595765 4674263 complement(3667798..3669720) 1 NC_008782.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3669720 4674263 Ajs_3471 Acidovorax sp. JS42 NADH dehydrogenase (quinone) YP_987661.1 3667798 R 232721 CDS YP_987662.1 121595766 4674256 complement(3669717..3670097) 1 NC_008782.1 hypothetical protein 3670097 4674256 Ajs_3472 Acidovorax sp. JS42 hypothetical protein YP_987662.1 3669717 R 232721 CDS YP_987663.1 121595767 4674251 complement(3670072..3670584) 1 NC_008782.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3670584 4674251 Ajs_3473 Acidovorax sp. JS42 lipoprotein signal peptidase YP_987663.1 3670072 R 232721 CDS YP_987664.1 121595768 4674249 complement(3670588..3671484) 1 NC_008782.1 KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease 3671484 4674249 Ajs_3474 Acidovorax sp. JS42 cation efflux system permease YP_987664.1 3670588 R 232721 CDS YP_987665.1 121595769 4674239 complement(3671640..3671909) 1 NC_008782.1 hypothetical protein 3671909 4674239 Ajs_3475 Acidovorax sp. JS42 hypothetical protein YP_987665.1 3671640 R 232721 CDS YP_987666.1 121595770 4674240 complement(3671932..3673023) 1 NC_008782.1 PFAM: protein of unknown function DUF59; KEGG: rfr:Rfer_3272 putative iron sulfur binding protein; hypothetical protein 3673023 4674240 Ajs_3476 Acidovorax sp. JS42 hypothetical protein YP_987666.1 3671932 R 232721 CDS YP_987667.1 121595771 4674227 complement(3673102..3673272) 1 NC_008782.1 KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 3673272 4674227 Ajs_3477 Acidovorax sp. JS42 C4-dicarboxylate transporter/malic acid transport protein YP_987667.1 3673102 R 232721 CDS YP_987668.1 121595772 4674221 complement(3673293..3674171) 1 NC_008782.1 KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 3674171 4674221 Ajs_3478 Acidovorax sp. JS42 C4-dicarboxylate transporter/malic acid transport protein YP_987668.1 3673293 R 232721 CDS YP_987669.1 121595773 4674214 complement(3674168..3675238) 1 NC_008782.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_3860 selenide, water dikinase; selenophosphate synthase 3675238 4674214 Ajs_3479 Acidovorax sp. JS42 selenophosphate synthase YP_987669.1 3674168 R 232721 CDS YP_987670.1 121595774 4674209 3675295..3676416 1 NC_008782.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 3676416 4674209 Ajs_3480 Acidovorax sp. JS42 tRNA 2-selenouridine synthase YP_987670.1 3675295 D 232721 CDS YP_987671.1 121595775 4674192 3676583..3677152 1 NC_008782.1 PFAM: restriction endonuclease; KEGG: rfr:Rfer_1543 hypothetical protein; restriction endonuclease 3677152 4674192 Ajs_3481 Acidovorax sp. JS42 restriction endonuclease YP_987671.1 3676583 D 232721 CDS YP_987672.1 121595776 4671995 3678478..3680544 1 NC_008782.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3680544 metG 4671995 metG Acidovorax sp. JS42 methionyl-tRNA synthetase YP_987672.1 3678478 D 232721 CDS YP_987673.1 121595777 4674156 3680544..3680870 1 NC_008782.1 hypothetical protein 3680870 4674156 Ajs_3484 Acidovorax sp. JS42 hypothetical protein YP_987673.1 3680544 D 232721 CDS YP_987674.1 121595778 4674162 complement(3680919..3681956) 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppu:PP_4508 transcriptional regulator, AraC family; AraC family transcriptional regulator 3681956 4674162 Ajs_3485 Acidovorax sp. JS42 AraC family transcriptional regulator YP_987674.1 3680919 R 232721 CDS YP_987675.1 121595779 4673303 3682048..3683661 1 NC_008782.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rfr:Rfer_3510 fumarate reductase/succinate dehydrogenase flavoprotein-like; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3683661 4673303 Ajs_3486 Acidovorax sp. JS42 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_987675.1 3682048 D 232721 CDS YP_987676.1 121595780 4673301 3683658..3684809 1 NC_008782.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ccr:CC1151 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 3684809 4673301 Ajs_3487 Acidovorax sp. JS42 FMN-dependent alpha-hydroxy acid dehydrogenase YP_987676.1 3683658 D 232721 CDS YP_987677.1 121595781 4673295 3684878..3686545 1 NC_008782.1 thiamine-pyrophosphate requiring enzyme; hypothetical protein 3686545 4673295 Ajs_3488 Acidovorax sp. JS42 hypothetical protein YP_987677.1 3684878 D 232721 CDS YP_987678.1 121595782 4673294 complement(3686667..3687353) 1 NC_008782.1 PFAM: protein of unknown function DUF161; KEGG: ret:RHE_CH00545 hypothetical protein; hypothetical protein 3687353 4673294 Ajs_3489 Acidovorax sp. JS42 hypothetical protein YP_987678.1 3686667 R 232721 CDS YP_987679.1 121595783 4673288 complement(3687503..3688003) 1 NC_008782.1 KEGG: pol:Bpro_0908 putative lipoprotein; putative lipoprotein 3688003 4673288 Ajs_3490 Acidovorax sp. JS42 putative lipoprotein YP_987679.1 3687503 R 232721 CDS YP_987680.1 121595784 4673284 3688148..3688351 1 NC_008782.1 KEGG: pol:Bpro_0907 hypothetical protein; hypothetical protein 3688351 4673284 Ajs_3491 Acidovorax sp. JS42 hypothetical protein YP_987680.1 3688148 D 232721 CDS YP_987681.1 121595785 4673282 3688427..3689287 1 NC_008782.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: rfr:Rfer_3030 chromosome segregation and condensation protein ScpA; condensin subunit ScpA 3689287 4673282 Ajs_3492 Acidovorax sp. JS42 condensin subunit ScpA YP_987681.1 3688427 D 232721 CDS YP_987682.1 121595786 4673275 3689337..3690926 1 NC_008782.1 KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase 3690926 4673275 Ajs_3493 Acidovorax sp. JS42 L-aspartate oxidase YP_987682.1 3689337 D 232721 CDS YP_987683.1 121595787 4673274 3690954..3691334 1 NC_008782.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 3691334 4673274 Ajs_3494 Acidovorax sp. JS42 aspartate alpha-decarboxylase YP_987683.1 3690954 D 232721 CDS YP_987684.1 121595788 4673271 3691365..3691727 1 NC_008782.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pfl:PFL_1486 5-carboxymethyl-2-hydroxymuconate isomerase, putative; 5-carboxymethyl-2-hydroxymuconate isomerase 3691727 4673271 Ajs_3495 Acidovorax sp. JS42 5-carboxymethyl-2-hydroxymuconate isomerase YP_987684.1 3691365 D 232721 CDS YP_987685.1 121595789 4673267 complement(3692067..3693866) 1 NC_008782.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I 3693866 4673267 Ajs_3496 Acidovorax sp. JS42 para-aminobenzoate synthase subunit I YP_987685.1 3692067 R 232721 CDS YP_987686.1 121595790 4673447 complement(3693936..3695060) 1 NC_008782.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 3695060 4673447 Ajs_3497 Acidovorax sp. JS42 quinolinate synthetase YP_987686.1 3693936 R 232721 CDS YP_987687.1 121595791 4673246 complement(3695140..3696063) 1 NC_008782.1 KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3696063 4673246 Ajs_3498 Acidovorax sp. JS42 nicotinate-nucleotide pyrophosphorylase YP_987687.1 3695140 R 232721 CDS YP_987688.1 121595792 4672727 3696084..3696965 1 NC_008782.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3696965 panB 4672727 panB Acidovorax sp. JS42 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_987688.1 3696084 D 232721 CDS YP_987689.1 121595793 4672704 3696982..3697851 1 NC_008782.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3697851 panC 4672704 panC Acidovorax sp. JS42 pantoate--beta-alanine ligase YP_987689.1 3696982 D 232721 CDS YP_987690.1 121595794 4672701 complement(3698162..3699154) 1 NC_008782.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 3699154 gpsA 4672701 gpsA Acidovorax sp. JS42 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_987690.1 3698162 R 232721 CDS YP_987691.1 121595795 4672006 complement(3699227..3699679) 1 NC_008782.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 3699679 4672006 Ajs_3502 Acidovorax sp. JS42 preprotein translocase subunit SecB YP_987691.1 3699227 R 232721 CDS YP_987692.1 121595796 4671951 complement(3699781..3700038) 1 NC_008782.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rfr:Rfer_1311 glutaredoxin, GrxC; glutaredoxin 3 3700038 4671951 Ajs_3503 Acidovorax sp. JS42 glutaredoxin 3 YP_987692.1 3699781 R 232721 CDS YP_987693.1 121595797 4671780 complement(3700088..3700495) 1 NC_008782.1 PFAM: Rhodanese domain protein; KEGG: rfr:Rfer_1310 rhodanese-like; rhodanese domain-containing protein 3700495 4671780 Ajs_3504 Acidovorax sp. JS42 rhodanese domain-containing protein YP_987693.1 3700088 R 232721 CDS YP_987694.1 121595798 4671496 3700569..3701312 1 NC_008782.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3701312 gpmA 4671496 gpmA Acidovorax sp. JS42 phosphoglyceromutase YP_987694.1 3700569 D 232721 CDS YP_987695.1 121595799 4671350 3701427..3702863 1 NC_008782.1 KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase-3 3702863 4671350 Ajs_3506 Acidovorax sp. JS42 C-terminal processing peptidase-3 YP_987695.1 3701427 D 232721 CDS YP_987696.1 121595800 4671412 3702931..3703695 1 NC_008782.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 3703695 4671412 Ajs_3507 Acidovorax sp. JS42 UBA/THIF-type NAD/FAD-binding protein YP_987696.1 3702931 D 232721 CDS YP_987697.1 121595801 4671448 3703804..3704214 1 NC_008782.1 PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3704214 4671448 Ajs_3508 Acidovorax sp. JS42 response regulator receiver protein YP_987697.1 3703804 D 232721 CDS YP_987698.1 121595802 4671449 complement(3704333..3705052) 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3705052 4671449 Ajs_3509 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_987698.1 3704333 R 232721 CDS YP_987699.1 121595803 4671427 3705119..3706462 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3706462 4671427 Ajs_3510 Acidovorax sp. JS42 multi-sensor signal transduction histidine kinase YP_987699.1 3705119 D 232721 CDS YP_987700.1 121595804 4670554 3706628..3706792 1 NC_008782.1 PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328; hypothetical protein 3706792 4670554 Ajs_3511 Acidovorax sp. JS42 hypothetical protein YP_987700.1 3706628 D 232721 CDS YP_987701.1 121595805 4670551 3706848..3707240 1 NC_008782.1 KEGG: pol:Bpro_0878 hypothetical protein; hypothetical protein 3707240 4670551 Ajs_3512 Acidovorax sp. JS42 hypothetical protein YP_987701.1 3706848 D 232721 CDS YP_987702.1 121595806 4670549 3707263..3707808 1 NC_008782.1 PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps; Ferritin, Dps family protein 3707808 4670549 Ajs_3513 Acidovorax sp. JS42 Ferritin, Dps family protein YP_987702.1 3707263 D 232721 CDS YP_987703.1 121595807 4670547 3707908..3708222 1 NC_008782.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated; transport protein 3708222 4670547 Ajs_3514 Acidovorax sp. JS42 transport protein YP_987703.1 3707908 D 232721 CDS YP_987704.1 121595808 4670546 3708313..3709413 1 NC_008782.1 KEGG: hch:HCH_03595 hypothetical protein; hypothetical protein 3709413 4670546 Ajs_3515 Acidovorax sp. JS42 hypothetical protein YP_987704.1 3708313 D 232721 CDS YP_987705.1 121595809 4670947 complement(3709414..3709911) 1 NC_008782.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 3709911 coaD 4670947 coaD Acidovorax sp. JS42 phosphopantetheine adenylyltransferase YP_987705.1 3709414 R 232721 CDS YP_987706.1 121595810 4670541 complement(3710057..3710680) 1 NC_008782.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rfr:Rfer_1668 conserved hypothetical protein 95; putative methyltransferase 3710680 4670541 Ajs_3517 Acidovorax sp. JS42 putative methyltransferase YP_987706.1 3710057 R 232721 CDS YP_987707.1 121595811 4670539 complement(3710677..3712059) 1 NC_008782.1 PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like; peptidase M16 domain-containing protein 3712059 4670539 Ajs_3518 Acidovorax sp. JS42 peptidase M16 domain-containing protein YP_987707.1 3710677 R 232721 CDS YP_987708.1 121595812 4670532 complement(3712075..3713529) 1 NC_008782.1 PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1671 peptidase M16-like; peptidase M16 domain-containing protein 3713529 4670532 Ajs_3519 Acidovorax sp. JS42 peptidase M16 domain-containing protein YP_987708.1 3712075 R 232721 CDS YP_987709.1 121595813 4670525 3713559..3714707 1 NC_008782.1 KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3714707 4670525 Ajs_3520 Acidovorax sp. JS42 signal recognition particle-docking protein FtsY YP_987709.1 3713559 D 232721 CDS YP_987710.1 121595814 4670822 complement(3714758..3715120) 1 NC_008782.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cyb:CYB_2195 divalent-cation tolerance protein CutA; CutA1 divalent ion tolerance protein 3715120 4670822 Ajs_3521 Acidovorax sp. JS42 CutA1 divalent ion tolerance protein YP_987710.1 3714758 R 232721 CDS YP_987711.1 121595815 4670594 3715281..3716246 1 NC_008782.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH); RNA polymerase sigma-32 subunit RpoH 3716246 4670594 Ajs_3522 Acidovorax sp. JS42 RNA polymerase sigma-32 subunit RpoH YP_987711.1 3715281 D 232721 CDS YP_987712.1 121595816 4670643 3716374..3717384 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_1691 uncharacterized protein UPF0065; hypothetical protein 3717384 4670643 Ajs_3523 Acidovorax sp. JS42 hypothetical protein YP_987712.1 3716374 D 232721 CDS YP_987713.1 121595817 4670665 3717613..3718395 1 NC_008782.1 PFAM: cyclic nucleotide-binding; KEGG: fra:Francci3_4286 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 3718395 4670665 Ajs_3524 Acidovorax sp. JS42 cyclic nucleotide-binding protein YP_987713.1 3717613 D 232721 CDS YP_987714.1 121595818 4670716 complement(3718417..3720240) 1 NC_008782.1 KEGG: rfr:Rfer_2220 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3720240 4670716 Ajs_3525 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_987714.1 3718417 R 232721 CDS YP_987715.1 121595819 4670823 complement(3720456..3721067) 1 NC_008782.1 PFAM: electron transport protein SCO1/SenC; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3721067 4670823 Ajs_3526 Acidovorax sp. JS42 electron transport protein SCO1/SenC YP_987715.1 3720456 R 232721 CDS YP_987716.1 121595820 4670879 complement(3721077..3721997) 1 NC_008782.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 3721997 4670879 Ajs_3527 Acidovorax sp. JS42 protoheme IX farnesyltransferase YP_987716.1 3721077 R 232721 CDS YP_987717.1 121595821 4670889 complement(3721994..3723184) 1 NC_008782.1 PFAM: cytochrome oxidase assembly; KEGG: rfr:Rfer_1688 cytochrome oxidase assembly; cytochrome oxidase assembly 3723184 4670889 Ajs_3528 Acidovorax sp. JS42 cytochrome oxidase assembly YP_987717.1 3721994 R 232721 CDS YP_987718.1 121595822 4670975 complement(3723190..3723939) 1 NC_008782.1 KEGG: rfr:Rfer_1687 hypothetical protein; hypothetical protein 3723939 4670975 Ajs_3529 Acidovorax sp. JS42 hypothetical protein YP_987718.1 3723190 R 232721 CDS YP_987719.1 121595823 4671033 complement(3723881..3724657) 1 NC_008782.1 KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase 3724657 4671033 Ajs_3530 Acidovorax sp. JS42 putative transmembrane cytochrome oxidase YP_987719.1 3723881 R 232721 CDS YP_987720.1 121595824 4671060 3724664..3724897 1 NC_008782.1 KEGG: pol:Bpro_1250 putative transmembrane protein; hypothetical protein 3724897 4671060 Ajs_3531 Acidovorax sp. JS42 hypothetical protein YP_987720.1 3724664 D 232721 CDS YP_987721.1 121595825 4671068 complement(3725075..3725956) 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 3725956 4671068 Ajs_3532 Acidovorax sp. JS42 cytochrome c oxidase subunit III YP_987721.1 3725075 R 232721 CDS YP_987722.1 121595826 4671080 complement(3726015..3726224) 1 NC_008782.1 KEGG: pol:Bpro_1248 hypothetical protein; hypothetical protein 3726224 4671080 Ajs_3533 Acidovorax sp. JS42 hypothetical protein YP_987722.1 3726015 R 232721 CDS YP_987723.1 121595827 4670563 complement(3726221..3726841) 1 NC_008782.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 3726841 4670563 Ajs_3534 Acidovorax sp. JS42 cytochrome C oxidase assembly protein YP_987723.1 3726221 R 232721 CDS YP_987724.1 121595828 4670564 complement(3726857..3726967) 1 NC_008782.1 hypothetical protein 3726967 4670564 Ajs_3535 Acidovorax sp. JS42 hypothetical protein YP_987724.1 3726857 R 232721 CDS YP_987725.1 121595829 4671117 complement(3726985..3728619) 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_1681 cytochrome-c oxidase; cytochrome-c oxidase 3728619 4671117 Ajs_3536 Acidovorax sp. JS42 cytochrome-c oxidase YP_987725.1 3726985 R 232721 CDS YP_987726.1 121595830 4671119 complement(3728652..3729821) 1 NC_008782.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II 3729821 4671119 Ajs_3537 Acidovorax sp. JS42 cytochrome c oxidase subunit II YP_987726.1 3728652 R 232721 CDS YP_987727.1 121595831 4671125 3729913..3730206 1 NC_008782.1 hypothetical protein 3730206 4671125 Ajs_3538 Acidovorax sp. JS42 hypothetical protein YP_987727.1 3729913 D 232721 CDS YP_987728.1 121595832 4671127 complement(3730245..3731153) 1 NC_008782.1 KEGG: pol:Bpro_1243 biotin synthesis protein BioC; biotin synthesis protein BioC 3731153 4671127 Ajs_3539 Acidovorax sp. JS42 biotin synthesis protein BioC YP_987728.1 3730245 R 232721 CDS YP_987729.1 121595833 4671128 3731189..3731917 1 NC_008782.1 KEGG: rfr:Rfer_1678 ComF family protein; ComF family protein 3731917 4671128 Ajs_3540 Acidovorax sp. JS42 ComF family protein YP_987729.1 3731189 D 232721 CDS YP_987730.1 121595834 4671130 3731927..3732496 1 NC_008782.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2; tRNA/rRNA methyltransferase SpoU 3732496 4671130 Ajs_3541 Acidovorax sp. JS42 tRNA/rRNA methyltransferase SpoU YP_987730.1 3731927 D 232721 CDS YP_987731.1 121595835 4671131 complement(3732526..3732990) 1 NC_008782.1 PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase; dehydratase 3732990 4671131 Ajs_3542 Acidovorax sp. JS42 dehydratase YP_987731.1 3732526 R 232721 CDS YP_987732.1 121595836 4671132 complement(3733073..3733693) 1 NC_008782.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_1239 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3733693 4671132 Ajs_3543 Acidovorax sp. JS42 cobyrinic acid a,c-diamide synthase YP_987732.1 3733073 R 232721 CDS YP_987733.1 121595837 4670569 complement(3733841..3734479) 1 NC_008782.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2660 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 3734479 4670569 Ajs_3544 Acidovorax sp. JS42 lysine exporter protein LysE/YggA YP_987733.1 3733841 R 232721 CDS YP_987734.1 121595838 4671154 3734767..3736734 1 NC_008782.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_1237 potassium efflux system protein; potassium efflux system protein 3736734 4671154 Ajs_3545 Acidovorax sp. JS42 potassium efflux system protein YP_987734.1 3734767 D 232721 CDS YP_987735.1 121595839 4671280 complement(3736759..3737751) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein; hypothetical protein 3737751 4671280 Ajs_3546 Acidovorax sp. JS42 hypothetical protein YP_987735.1 3736759 R 232721 CDS YP_987736.1 121595840 4671278 complement(3737840..3738640) 1 NC_008782.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase 3738640 4671278 Ajs_3547 Acidovorax sp. JS42 3-oxoadipate enol-lactonase YP_987736.1 3737840 R 232721 CDS YP_987737.1 121595841 4671226 complement(3738668..3739879) 1 NC_008782.1 KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 3739879 4671226 Ajs_3548 Acidovorax sp. JS42 beta-ketoadipyl CoA thiolase YP_987737.1 3738668 R 232721 CDS YP_987738.1 121595842 4674193 complement(3739955..3740608) 1 NC_008782.1 KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 3740608 4674193 Ajs_3549 Acidovorax sp. JS42 butyryl-CoA:acetate CoA transferase YP_987738.1 3739955 R 232721 CDS YP_987739.1 121595843 4671517 complement(3740636..3741331) 1 NC_008782.1 KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 3741331 4671517 Ajs_3550 Acidovorax sp. JS42 3-oxoacid CoA-transferase subunit A YP_987739.1 3740636 R 232721 CDS YP_987740.1 121595844 4671592 3741447..3742250 1 NC_008782.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family; IclR family transcriptional regulator 3742250 4671592 Ajs_3551 Acidovorax sp. JS42 IclR family transcriptional regulator YP_987740.1 3741447 D 232721 CDS YP_987741.1 121595845 4671456 3742668..3743123 1 NC_008782.1 KEGG: pol:Bpro_1226 hypothetical protein; hypothetical protein 3743123 4671456 Ajs_3553 Acidovorax sp. JS42 hypothetical protein YP_987741.1 3742668 D 232721 CDS YP_987742.1 121595846 4671667 complement(3743084..3743986) 1 NC_008782.1 PFAM: UspA domain protein; KEGG: ppu:PP_2648 universal stress protein family; UspA domain-containing protein 3743986 4671667 Ajs_3554 Acidovorax sp. JS42 UspA domain-containing protein YP_987742.1 3743084 R 232721 CDS YP_987743.1 121595847 4671752 complement(3744447..3745106) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I; class I cytochrome c 3745106 4671752 Ajs_3555 Acidovorax sp. JS42 class I cytochrome c YP_987743.1 3744447 R 232721 CDS YP_987744.1 121595848 4671501 3745215..3746057 1 NC_008782.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5; ATPase central domain-containing protein 3746057 4671501 Ajs_3556 Acidovorax sp. JS42 ATPase central domain-containing protein YP_987744.1 3745215 D 232721 CDS YP_987745.1 121595849 4671790 3746071..3746298 1 NC_008782.1 KEGG: pol:Bpro_1221 hypothetical protein; hypothetical protein 3746298 4671790 Ajs_3557 Acidovorax sp. JS42 hypothetical protein YP_987745.1 3746071 D 232721 CDS YP_987746.1 121595850 4671798 3746316..3746918 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein; GCN5-like N-acetyltransferase 3746918 4671798 Ajs_3558 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_987746.1 3746316 D 232721 CDS YP_987747.1 121595851 4671803 3746937..3748124 1 NC_008782.1 KEGG: rfr:Rfer_1591 hypothetical protein; hypothetical protein 3748124 4671803 Ajs_3559 Acidovorax sp. JS42 hypothetical protein YP_987747.1 3746937 D 232721 CDS YP_987748.1 121595852 4671508 3748130..3750034 1 NC_008782.1 PFAM: surface antigen (D15); KEGG: rfr:Rfer_1592 surface antigen (D15); surface antigen (D15) 3750034 4671508 Ajs_3560 Acidovorax sp. JS42 surface antigen (D15) YP_987748.1 3748130 D 232721 CDS YP_987749.1 121595853 4671824 3750142..3754284 1 NC_008782.1 PFAM: protein of unknown function DUF490; KEGG: rfr:Rfer_1593 protein of unknown function DUF490; hypothetical protein 3754284 4671824 Ajs_3561 Acidovorax sp. JS42 hypothetical protein YP_987749.1 3750142 D 232721 CDS YP_987750.1 121595854 4672488 complement(3754493..3754855) 1 NC_008782.1 KEGG: pcr:Pcryo_0811 17 kDa surface antigen; hypothetical protein 3754855 4672488 Ajs_3562 Acidovorax sp. JS42 hypothetical protein YP_987750.1 3754493 R 232721 CDS YP_987751.1 121595855 4672131 complement(3755146..3756549) 1 NC_008782.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: tdn:Tmden_1156 phospholipase D/transphosphatidylase; cardiolipin synthetase 2 3756549 4672131 Ajs_3563 Acidovorax sp. JS42 cardiolipin synthetase 2 YP_987751.1 3755146 R 232721 CDS YP_987752.1 121595856 4672220 complement(3756880..3757257) 1 NC_008782.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pfl:PFL_4456 arsenate reductase; arsenate reductase 3757257 4672220 Ajs_3564 Acidovorax sp. JS42 arsenate reductase YP_987752.1 3756880 R 232721 CDS YP_987753.1 121595857 4672252 complement(3757305..3758963) 1 NC_008782.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1594 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 3758963 4672252 Ajs_3565 Acidovorax sp. JS42 binding-protein-dependent transport systems inner membrane component YP_987753.1 3757305 R 232721 CDS YP_987754.1 121595858 4672321 3759183..3760259 1 NC_008782.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related; ABC transporter-like protein 3760259 4672321 Ajs_3566 Acidovorax sp. JS42 ABC transporter-like protein YP_987754.1 3759183 D 232721 CDS YP_987755.1 121595859 4672344 complement(3760303..3761529) 1 NC_008782.1 KEGG: sal:Sala_1097 hypothetical protein; hypothetical protein 3761529 4672344 Ajs_3567 Acidovorax sp. JS42 hypothetical protein YP_987755.1 3760303 R 232721 CDS YP_987756.1 121595860 4672033 complement(3761660..3762400) 1 NC_008782.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase; lyso-ornithine lipid acyltransferase 3762400 4672033 Ajs_3568 Acidovorax sp. JS42 lyso-ornithine lipid acyltransferase YP_987756.1 3761660 R 232721 CDS YP_987757.1 121595861 4672398 complement(3762420..3763715) 1 NC_008782.1 PFAM: amidohydrolase; KEGG: rfr:Rfer_1381 amidohydrolase; dihydroorotase 3763715 4672398 Ajs_3569 Acidovorax sp. JS42 dihydroorotase YP_987757.1 3762420 R 232721 CDS YP_987758.1 121595862 4672401 complement(3763928..3764890) 1 NC_008782.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 3764890 pyrB 4672401 pyrB Acidovorax sp. JS42 aspartate carbamoyltransferase catalytic subunit YP_987758.1 3763928 R 232721 CDS YP_987759.1 121595863 4672041 complement(3764893..3765426) 1 NC_008782.1 PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase; phosphoribosyltransferase 3765426 4672041 Ajs_3571 Acidovorax sp. JS42 phosphoribosyltransferase YP_987759.1 3764893 R 232721 CDS YP_987760.1 121595864 4672429 complement(3765423..3765842) 1 NC_008782.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 3765842 4672429 Ajs_3572 Acidovorax sp. JS42 Holliday junction resolvase-like protein YP_987760.1 3765423 R 232721 CDS YP_987761.1 121595865 4672432 complement(3765839..3766438) 1 NC_008782.1 PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179; hypothetical protein 3766438 4672432 Ajs_3573 Acidovorax sp. JS42 hypothetical protein YP_987761.1 3765839 R 232721 CDS YP_987762.1 121595866 4672438 complement(3766565..3772645) 1 NC_008782.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 3772645 4672438 Ajs_3574 Acidovorax sp. JS42 CheA signal transduction histidine kinase YP_987762.1 3766565 R 232721 CDS YP_987763.1 121595867 4672440 complement(3772692..3774956) 1 NC_008782.1 PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_1374 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3774956 4672440 Ajs_3575 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987763.1 3772692 R 232721 CDS YP_987764.1 121595868 4672445 complement(3774978..3775505) 1 NC_008782.1 PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein; putative CheW protein 3775505 4672445 Ajs_3576 Acidovorax sp. JS42 putative CheW protein YP_987764.1 3774978 R 232721 CDS YP_987765.1 121595869 4672454 complement(3775522..3775887) 1 NC_008782.1 PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3775887 4672454 Ajs_3577 Acidovorax sp. JS42 response regulator receiver protein YP_987765.1 3775522 R 232721 CDS YP_987766.1 121595870 4672598 complement(3775899..3776291) 1 NC_008782.1 PFAM: response regulator receiver; KEGG: rfr:Rfer_1371 response regulator receiver domain protein; response regulator receiver protein 3776291 4672598 Ajs_3578 Acidovorax sp. JS42 response regulator receiver protein YP_987766.1 3775899 R 232721 CDS YP_987767.1 121595871 4674460 complement(3776343..3776495) 1 NC_008782.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 3776495 4674460 Ajs_3579 Acidovorax sp. JS42 rubredoxin-type Fe(Cys)4 protein YP_987767.1 3776343 R 232721 CDS YP_987768.1 121595872 4674459 3776611..3777555 1 NC_008782.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 3777555 4674459 Ajs_3580 Acidovorax sp. JS42 phosphomethylpyrimidine kinase type-1 YP_987768.1 3776611 D 232721 CDS YP_987769.1 121595873 4670580 3777539..3778843 1 NC_008782.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3778843 4670580 Ajs_3581 Acidovorax sp. JS42 glutamate-1-semialdehyde aminotransferase YP_987769.1 3777539 D 232721 CDS YP_987770.1 121595874 4672755 3778933..3780786 1 NC_008782.1 PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; alkaline phosphatase 3780786 4672755 Ajs_3582 Acidovorax sp. JS42 alkaline phosphatase YP_987770.1 3778933 D 232721 CDS YP_987771.1 121595875 4672814 complement(3780880..3781341) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: bbr:BB4215 cytochrome c552 precursor; class I cytochrome c 3781341 4672814 Ajs_3583 Acidovorax sp. JS42 class I cytochrome c YP_987771.1 3780880 R 232721 CDS YP_987772.1 121595876 4672846 complement(3781361..3782962) 1 NC_008782.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3782962 purH 4672846 purH Acidovorax sp. JS42 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_987772.1 3781361 R 232721 CDS YP_987773.1 121595877 4672895 complement(3783045..3783278) 1 NC_008782.1 PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; DNA-binding protein Fis 3783278 4672895 Ajs_3585 Acidovorax sp. JS42 DNA-binding protein Fis YP_987773.1 3783045 R 232721 CDS YP_987774.1 121595878 4672942 complement(3783259..3784320) 1 NC_008782.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein 3784320 4672942 Ajs_3586 Acidovorax sp. JS42 nifR3 family TIM-barrel protein YP_987774.1 3783259 R 232721 CDS YP_987775.1 121595879 4672946 3784415..3785023 1 NC_008782.1 KEGG: pol:Bpro_1129 hypothetical protein; hypothetical protein 3785023 4672946 Ajs_3587 Acidovorax sp. JS42 hypothetical protein YP_987775.1 3784415 D 232721 CDS YP_987776.1 121595880 4673031 complement(3785361..3786536) 1 NC_008782.1 PFAM: HipA domain protein; KEGG: bam:Bamb_3753 HipA domain protein; HipA domain-containing protein 3786536 4673031 Ajs_3588 Acidovorax sp. JS42 HipA domain-containing protein YP_987776.1 3785361 R 232721 CDS YP_987777.1 121595881 4673032 complement(3786581..3786892) 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: plu:plu2422 hypothetical protein; helix-turn-helix domain-containing protein 3786892 4673032 Ajs_3589 Acidovorax sp. JS42 helix-turn-helix domain-containing protein YP_987777.1 3786581 R 232721 CDS YP_987778.1 121595882 4673057 complement(3787037..3787276) 1 NC_008782.1 PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2619 hypothetical protein; XRE family transcriptional regulator 3787276 4673057 Ajs_3590 Acidovorax sp. JS42 XRE family transcriptional regulator YP_987778.1 3787037 R 232721 CDS YP_987779.1 121595883 4673068 3787420..3788085 1 NC_008782.1 hypothetical protein 3788085 4673068 Ajs_3591 Acidovorax sp. JS42 hypothetical protein YP_987779.1 3787420 D 232721 CDS YP_987780.1 121595884 4673070 3788103..3788831 1 NC_008782.1 hypothetical protein 3788831 4673070 Ajs_3592 Acidovorax sp. JS42 hypothetical protein YP_987780.1 3788103 D 232721 CDS YP_987781.1 121595885 4673080 complement(3788896..3789633) 1 NC_008782.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 3789633 4673080 Ajs_3593 Acidovorax sp. JS42 ATP-binding domain-containing protein IstB YP_987781.1 3788896 R 232721 CDS YP_987782.1 121595886 4673083 complement(3789670..3791214) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit 3791214 4673083 Ajs_3594 Acidovorax sp. JS42 integrase catalytic subunit YP_987782.1 3789670 R 232721 CDS YP_987783.1 121595887 4673090 3791300..3791821 1 NC_008782.1 hypothetical protein 3791821 4673090 Ajs_3595 Acidovorax sp. JS42 hypothetical protein YP_987783.1 3791300 D 232721 CDS YP_987784.1 121595888 4673122 3791818..3792294 1 NC_008782.1 KEGG: sat:SYN_02013 hypothetical cytosolic protein; hypothetical protein 3792294 4673122 Ajs_3596 Acidovorax sp. JS42 hypothetical protein YP_987784.1 3791818 D 232721 CDS YP_987785.1 121595889 4673176 3792281..3792562 1 NC_008782.1 KEGG: rso:RS05533 hypothetical protein; hypothetical protein 3792562 4673176 Ajs_3597 Acidovorax sp. JS42 hypothetical protein YP_987785.1 3792281 D 232721 CDS YP_987786.1 121595890 4674650 complement(3792543..3794117) 1 NC_008782.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_3094 AAA ATPase, central domain protein; ATPase central domain-containing protein 3794117 4674650 Ajs_3598 Acidovorax sp. JS42 ATPase central domain-containing protein YP_987786.1 3792543 R 232721 CDS YP_987787.1 121595891 4673186 complement(3794943..3795806) 1 NC_008782.1 hypothetical protein 3795806 4673186 Ajs_3599 Acidovorax sp. JS42 hypothetical protein YP_987787.1 3794943 R 232721 CDS YP_987788.1 121595892 4673239 complement(3795809..3798562) 1 NC_008782.1 KEGG: pha:PSHAa1245 hypothetical protein; hypothetical protein 3798562 4673239 Ajs_3600 Acidovorax sp. JS42 hypothetical protein YP_987788.1 3795809 R 232721 CDS YP_987789.1 121595893 4673422 complement(3798562..3799176) 1 NC_008782.1 KEGG: pfl:PFL_5240 hypothetical protein; hypothetical protein 3799176 4673422 Ajs_3601 Acidovorax sp. JS42 hypothetical protein YP_987789.1 3798562 R 232721 CDS YP_987790.1 121595894 4673558 complement(3799173..3800432) 1 NC_008782.1 KEGG: ppu:PP_0695 hypothetical protein; hypothetical protein 3800432 4673558 Ajs_3602 Acidovorax sp. JS42 hypothetical protein YP_987790.1 3799173 R 232721 CDS YP_987791.1 121595895 4673573 complement(3800846..3802558) 1 NC_008782.1 PFAM: protein of unknown function DUF262; KEGG: rfr:Rfer_1061 protein of unknown function DUF262; hypothetical protein 3802558 4673573 Ajs_3603 Acidovorax sp. JS42 hypothetical protein YP_987791.1 3800846 R 232721 CDS YP_987792.1 121595896 4673592 complement(3802582..3803850) 1 NC_008782.1 PFAM: AAA-4 family protein; KEGG: aeh:Mlg_1541 putative transcriptional regulator; putative transcriptional regulator 3803850 4673592 Ajs_3604 Acidovorax sp. JS42 putative transcriptional regulator YP_987792.1 3802582 R 232721 CDS YP_987793.1 121595897 4673607 complement(3803852..3806719) 1 NC_008782.1 PFAM: SMC domain protein; KEGG: aeh:Mlg_1540 SMC domain protein; SMC domain-containing protein 3806719 4673607 Ajs_3605 Acidovorax sp. JS42 SMC domain-containing protein YP_987793.1 3803852 R 232721 CDS YP_987794.1 121595898 4673627 complement(3806730..3809732) 1 NC_008782.1 KEGG: neu:NE2527 restriction enzymes type I helicase subunits and related helicases; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 3809732 4673627 Ajs_3606 Acidovorax sp. JS42 HsdR family type I site-specific deoxyribonuclease YP_987794.1 3806730 R 232721 CDS YP_987795.1 121595899 4673653 complement(3809732..3810922) 1 NC_008782.1 KEGG: neu:NE2526 restriction modification system, type I; restriction modification system 3810922 4673653 Ajs_3607 Acidovorax sp. JS42 restriction modification system YP_987795.1 3809732 R 232721 CDS YP_987796.1 121595900 4673723 complement(3810915..3812801) 1 NC_008782.1 PFAM: AAA-4 family protein; KEGG: neu:NE2525 possible ATP-dependent DNA helicase RecG-related protein; putative transcriptional regulator 3812801 4673723 Ajs_3608 Acidovorax sp. JS42 putative transcriptional regulator YP_987796.1 3810915 R 232721 CDS YP_987797.1 121595901 4673311 complement(3812794..3814320) 1 NC_008782.1 PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: neu:NE2524 possible type I restriction-modification system methylation subunit; N-6 DNA methylase 3814320 4673311 Ajs_3609 Acidovorax sp. JS42 N-6 DNA methylase YP_987797.1 3812794 R 232721 CDS YP_987798.1 121595902 4673798 complement(3814317..3815819) 1 NC_008782.1 PFAM: N-6 DNA methylase; KEGG: neu:NE2522 type I restriction-modification system methylation subunit; N-6 DNA methylase 3815819 4673798 Ajs_3610 Acidovorax sp. JS42 N-6 DNA methylase YP_987798.1 3814317 R 232721 CDS YP_987799.1 121595903 4673799 complement(3815816..3816013) 1 NC_008782.1 hypothetical protein 3816013 4673799 Ajs_3611 Acidovorax sp. JS42 hypothetical protein YP_987799.1 3815816 R 232721 CDS YP_987800.1 121595904 4673805 complement(3816001..3816267) 1 NC_008782.1 hypothetical protein 3816267 4673805 Ajs_3612 Acidovorax sp. JS42 hypothetical protein YP_987800.1 3816001 R 232721 CDS YP_987801.1 121595905 4673808 complement(3816280..3817368) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3817368 4673808 Ajs_3613 Acidovorax sp. JS42 transposase, IS4 family protein YP_987801.1 3816280 R 232721 CDS YP_987802.1 121595906 4673822 complement(3817399..3818466) 1 NC_008782.1 PFAM: phage integrase family protein; phage integrase family protein 3818466 4673822 Ajs_3614 Acidovorax sp. JS42 phage integrase family protein YP_987802.1 3817399 R 232721 CDS YP_987803.1 121595907 4673844 complement(3818463..3819365) 1 NC_008782.1 KEGG: xcv:XCV1295 putative phage replication protein; hypothetical protein 3819365 4673844 Ajs_3615 Acidovorax sp. JS42 hypothetical protein YP_987803.1 3818463 R 232721 CDS YP_987804.1 121595908 4673316 complement(3819720..3820508) 1 NC_008782.1 hypothetical protein 3820508 4673316 Ajs_3616 Acidovorax sp. JS42 hypothetical protein YP_987804.1 3819720 R 232721 CDS YP_987805.1 121595909 4673854 complement(3820505..3821677) 1 NC_008782.1 PFAM: phage integrase family protein; KEGG: pst:PSPTO_1100 site-specific recombinase, phage integrase family; phage integrase family protein 3821677 4673854 Ajs_3617 Acidovorax sp. JS42 phage integrase family protein YP_987805.1 3820505 R 232721 CDS YP_987806.1 121595910 4673990 complement(3821896..3822990) 1 NC_008782.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bam:Bamb_0429 GTP-binding protein YchF; GTP-binding protein YchF 3822990 4673990 Ajs_3618 Acidovorax sp. JS42 GTP-binding protein YchF YP_987806.1 3821896 R 232721 CDS YP_987807.1 121595911 4674111 complement(3823115..3823984) 1 NC_008782.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel; MOSC domain-containing protein 3823984 4674111 Ajs_3619 Acidovorax sp. JS42 MOSC domain-containing protein YP_987807.1 3823115 R 232721 CDS YP_987808.1 121595912 4674097 3824086..3825225 1 NC_008782.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rfr:Rfer_1576 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3825225 4674097 Ajs_3620 Acidovorax sp. JS42 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_987808.1 3824086 D 232721 CDS YP_987809.1 121595913 4674073 3825269..3825979 1 NC_008782.1 KEGG: rfr:Rfer_1575 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 3825979 4674073 Ajs_3621 Acidovorax sp. JS42 thiol:disulfide interchange protein DsbC YP_987809.1 3825269 D 232721 CDS YP_987810.1 121595914 4674055 3826146..3827927 1 NC_008782.1 PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61; peptidase M61 domain-containing protein 3827927 4674055 Ajs_3622 Acidovorax sp. JS42 peptidase M61 domain-containing protein YP_987810.1 3826146 D 232721 CDS YP_987811.1 121595915 4674043 3827924..3828757 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1573 enoyl-CoA hydratase/isomerase; short chain enoyl-CoA hydratase 3828757 4674043 Ajs_3623 Acidovorax sp. JS42 short chain enoyl-CoA hydratase YP_987811.1 3827924 D 232721 CDS YP_987812.1 121595916 4674017 3828954..3829412 1 NC_008782.1 KEGG: rfr:Rfer_3366 hypothetical protein; hypothetical protein 3829412 4674017 Ajs_3624 Acidovorax sp. JS42 hypothetical protein YP_987812.1 3828954 D 232721 CDS YP_987813.1 121595917 4674717 3829550..3830896 1 NC_008782.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3830896 4674717 Ajs_3625 Acidovorax sp. JS42 (dimethylallyl)adenosine tRNA methylthiotransferase YP_987813.1 3829550 D 232721 CDS YP_987814.1 121595918 4674678 complement(3831018..3832397) 1 NC_008782.1 KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) 3832397 4674678 Ajs_3626 Acidovorax sp. JS42 signal recognition particle subunit FFH/SRP54 (srp54) YP_987814.1 3831018 R 232721 CDS YP_987815.1 121595919 4674694 3832489..3833289 1 NC_008782.1 PFAM: cytochrome c assembly protein; KEGG: rfr:Rfer_3343 cytochrome c assembly protein; cytochrome c assembly protein 3833289 4674694 Ajs_3627 Acidovorax sp. JS42 cytochrome c assembly protein YP_987815.1 3832489 D 232721 CDS YP_987816.1 121595920 4674684 3833286..3833516 1 NC_008782.1 KEGG: mfa:Mfla_0216 hypothetical protein; hypothetical protein 3833516 4674684 Ajs_3628 Acidovorax sp. JS42 hypothetical protein YP_987816.1 3833286 D 232721 CDS YP_987817.1 121595921 4674645 3833521..3835221 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3835221 4674645 Ajs_3629 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_987817.1 3833521 D 232721 CDS YP_987818.1 121595922 4674641 3835237..3836745 1 NC_008782.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3836745 4674641 Ajs_3630 Acidovorax sp. JS42 Fis family two component sigma-54 specific transcriptional regulator YP_987818.1 3835237 D 232721 CDS YP_987819.1 121595923 4674639 3836726..3837325 1 NC_008782.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 3837325 4674639 Ajs_3631 Acidovorax sp. JS42 N-acetyl-anhydromuranmyl-L-alanine amidase YP_987819.1 3836726 D 232721 CDS YP_987820.1 121595924 4674631 3837681..3840599 1 NC_008782.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3840599 4674631 Ajs_3632 Acidovorax sp. JS42 ribonucleotide-diphosphate reductase subunit alpha YP_987820.1 3837681 D 232721 CDS YP_987821.1 121595925 4674595 3840738..3841928 1 NC_008782.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3841928 4674595 Ajs_3633 Acidovorax sp. JS42 ribonucleotide-diphosphate reductase subunit beta YP_987821.1 3840738 D 232721 CDS YP_987822.1 121595926 4674571 3842109..3842690 1 NC_008782.1 KEGG: rfr:Rfer_3349 histone protein; histone protein 3842690 4674571 Ajs_3634 Acidovorax sp. JS42 histone protein YP_987822.1 3842109 D 232721 CDS YP_987823.1 121595927 4674553 complement(3842788..3843684) 1 NC_008782.1 PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB; ribokinase-like domain-containing protein 3843684 4674553 Ajs_3635 Acidovorax sp. JS42 ribokinase-like domain-containing protein YP_987823.1 3842788 R 232721 CDS YP_987824.1 121595928 4674557 complement(3843710..3845047) 1 NC_008782.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: rso:RSc2789 probable transmembrane protein; Zinc finger-domain-containing protein 3845047 4674557 Ajs_3636 Acidovorax sp. JS42 Zinc finger-domain-containing protein YP_987824.1 3843710 R 232721 CDS YP_987825.1 121595929 4674540 complement(3845097..3845990) 1 NC_008782.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 3845990 prmA 4674540 prmA Acidovorax sp. JS42 ribosomal protein L11 methyltransferase YP_987825.1 3845097 R 232721 CDS YP_987826.1 121595930 4674522 complement(3846076..3847425) 1 NC_008782.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rfr:Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 3847425 4674522 Ajs_3638 Acidovorax sp. JS42 acetyl-CoA carboxylase, biotin carboxylase YP_987826.1 3846076 R 232721 CDS YP_987827.1 121595931 4674524 complement(3847539..3848003) 1 NC_008782.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein; biotin carboxyl carrier protein 3848003 4674524 Ajs_3639 Acidovorax sp. JS42 biotin carboxyl carrier protein YP_987827.1 3847539 R 232721 CDS YP_987828.1 121595932 4674516 complement(3848114..3848701) 1 NC_008782.1 PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3354 putative thioredoxin-related transmembrane protein; redoxin domain-containing protein 3848701 4674516 Ajs_3640 Acidovorax sp. JS42 redoxin domain-containing protein YP_987828.1 3848114 R 232721 CDS YP_987829.1 121595933 4674452 complement(3848698..3849309) 1 NC_008782.1 KEGG: pol:Bpro_1097 hypothetical protein; hypothetical protein 3849309 4674452 Ajs_3641 Acidovorax sp. JS42 hypothetical protein YP_987829.1 3848698 R 232721 CDS YP_987830.1 121595934 4674434 3849526..3850950 1 NC_008782.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3356 UDP-N-acetylmuramate; UDP-N-acetylmuramate 3850950 4674434 Ajs_3642 Acidovorax sp. JS42 UDP-N-acetylmuramate YP_987830.1 3849526 D 232721 CDS YP_987831.1 121595935 4673263 complement(3850999..3851310) 1 NC_008782.1 KEGG: pol:Bpro_1095 hypothetical protein; hypothetical protein 3851310 4673263 Ajs_3643 Acidovorax sp. JS42 hypothetical protein YP_987831.1 3850999 R 232721 CDS YP_987832.1 121595936 4674439 complement(3851405..3852523) 1 NC_008782.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3852523 4674439 Ajs_3644 Acidovorax sp. JS42 phospho-2-dehydro-3-deoxyheptonate aldolase YP_987832.1 3851405 R 232721 CDS YP_987833.1 121595937 4674414 complement(3852777..3853325) 1 NC_008782.1 hypothetical protein 3853325 4674414 Ajs_3645 Acidovorax sp. JS42 hypothetical protein YP_987833.1 3852777 R 232721 CDS YP_987834.1 121595938 4674392 complement(3853348..3854808) 1 NC_008782.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_3369 peptidase U62, modulator of DNA gyrase; microcin-processing peptidase 2 3854808 4674392 Ajs_3646 Acidovorax sp. JS42 microcin-processing peptidase 2 YP_987834.1 3853348 R 232721 CDS YP_987835.1 121595939 4674384 complement(3854870..3856042) 1 NC_008782.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA; rod shape-determining protein RodA 3856042 4674384 Ajs_3647 Acidovorax sp. JS42 rod shape-determining protein RodA YP_987835.1 3854870 R 232721 CDS YP_987836.1 121595940 4674348 3858544..3859131 1 NC_008782.1 PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227; hypothetical protein 3859131 4674348 Ajs_3649 Acidovorax sp. JS42 hypothetical protein YP_987836.1 3858544 D 232721 CDS YP_987837.1 121595941 4674341 complement(3859132..3860685) 1 NC_008782.1 PFAM: O-antigen polymerase; KEGG: rfr:Rfer_4036 O-antigen polymerase; O-antigen polymerase 3860685 4674341 Ajs_3650 Acidovorax sp. JS42 O-antigen polymerase YP_987837.1 3859132 R 232721 CDS YP_987838.1 121595942 4674339 complement(3860734..3861210) 1 NC_008782.1 PFAM: cytochrome c, class I; KEGG: bbr:BB1839 putative cytochrome c; class I cytochrome c 3861210 4674339 Ajs_3651 Acidovorax sp. JS42 class I cytochrome c YP_987838.1 3860734 R 232721 CDS YP_987839.1 121595943 4674337 complement(3861282..3861947) 1 NC_008782.1 KEGG: eba:ebA6069 conserved hypothetical protein, putatively exported via twin-arginine system; hypothetical protein 3861947 4674337 Ajs_3652 Acidovorax sp. JS42 hypothetical protein YP_987839.1 3861282 R 232721 CDS YP_987840.1 121595944 4674322 complement(3861975..3862706) 1 NC_008782.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bbr:BB1837 putative ECF-family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 3862706 4674322 Ajs_3653 Acidovorax sp. JS42 ECF subfamily RNA polymerase sigma-24 factor YP_987840.1 3861975 R 232721 CDS YP_987841.1 121595945 4674283 3862835..3864922 1 NC_008782.1 PFAM: ribonuclease II; KEGG: rfr:Rfer_3411 ribonuclease II; ribonuclease II 3864922 4674283 Ajs_3654 Acidovorax sp. JS42 ribonuclease II YP_987841.1 3862835 D 232721 CDS YP_987842.1 121595946 4674274 3864947..3865861 1 NC_008782.1 TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like; TonB family protein 3865861 4674274 Ajs_3655 Acidovorax sp. JS42 TonB family protein YP_987842.1 3864947 D 232721 CDS YP_987843.1 121595947 4674125 3865861..3866709 1 NC_008782.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3866709 aroE 4674125 aroE Acidovorax sp. JS42 shikimate 5-dehydrogenase YP_987843.1 3865861 D 232721 CDS YP_987844.1 121595948 4674216 3866713..3867435 1 NC_008782.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rfr:Rfer_3419 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 3867435 4674216 Ajs_3657 Acidovorax sp. JS42 monofunctional biosynthetic peptidoglycan transglycosylase YP_987844.1 3866713 D 232721 CDS YP_987845.1 121595949 4674225 3867515..3868075 1 NC_008782.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3868075 ruvC 4674225 ruvC Acidovorax sp. JS42 Holliday junction resolvase YP_987845.1 3867515 D 232721 CDS YP_987846.1 121595950 4674208 complement(3868112..3869764) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3869764 4674208 Ajs_3659 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987846.1 3868112 R 232721 CDS YP_987847.1 121595951 4674188 3870019..3871644 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2029 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3871644 4674188 Ajs_3660 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987847.1 3870019 D 232721 CDS YP_987848.1 121595952 4674184 complement(3871696..3873540) 1 NC_008782.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3873540 4674184 Ajs_3661 Acidovorax sp. JS42 thiamine biosynthesis protein ThiC YP_987848.1 3871696 R 232721 CDS YP_987849.1 121595953 4673738 complement(3873785..3873961) 1 NC_008782.1 KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein 3873961 4673738 Ajs_3662 Acidovorax sp. JS42 hypothetical protein YP_987849.1 3873785 R 232721 CDS YP_987850.1 121595954 4673701 complement(3873980..3874903) 1 NC_008782.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 3874903 lpxC 4673701 lpxC Acidovorax sp. JS42 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_987850.1 3873980 R 232721 CDS YP_987851.1 121595955 4673683 3875067..3876863 1 NC_008782.1 PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein; methyl-accepting chemotaxis sensory transducer 3876863 4673683 Ajs_3664 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987851.1 3875067 D 232721 CDS YP_987852.1 121595956 4673668 complement(3877005..3878234) 1 NC_008782.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ; cell division protein FtsZ 3878234 4673668 Ajs_3665 Acidovorax sp. JS42 cell division protein FtsZ YP_987852.1 3877005 R 232721 CDS YP_987853.1 121595957 4673667 complement(3878397..3879626) 1 NC_008782.1 PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA; cell division protein FtsA 3879626 4673667 Ajs_3666 Acidovorax sp. JS42 cell division protein FtsA YP_987853.1 3878397 R 232721 CDS YP_987854.1 121595958 4673663 complement(3879644..3880477) 1 NC_008782.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rfr:Rfer_3422 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein 3880477 4673663 Ajs_3667 Acidovorax sp. JS42 polypeptide-transport-associated domain-containing protein YP_987854.1 3879644 R 232721 CDS YP_987855.1 121595959 4673646 complement(3880474..3881472) 1 NC_008782.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 3881472 ddl 4673646 ddl Acidovorax sp. JS42 D-alanine--D-alanine ligase YP_987855.1 3880474 R 232721 CDS YP_987856.1 121595960 4673644 complement(3881469..3882902) 1 NC_008782.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3882902 murC 4673644 murC Acidovorax sp. JS42 UDP-N-acetylmuramate--L-alanine ligase YP_987856.1 3881469 R 232721 CDS YP_987857.1 121595961 4673642 complement(3882899..3884098) 1 NC_008782.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 3884098 murG 4673642 murG Acidovorax sp. JS42 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_987857.1 3882899 R 232721 CDS YP_987858.1 121595962 4673634 complement(3884193..3885473) 1 NC_008782.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein; cell division protein FtsW 3885473 4673634 Ajs_3671 Acidovorax sp. JS42 cell division protein FtsW YP_987858.1 3884193 R 232721 CDS YP_987859.1 121595963 4673631 complement(3885470..3886966) 1 NC_008782.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3886966 murD 4673631 murD Acidovorax sp. JS42 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_987859.1 3885470 R 232721 CDS YP_987860.1 121595964 4673624 complement(3887359..3888537) 1 NC_008782.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 3888537 mraY 4673624 mraY Acidovorax sp. JS42 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_987860.1 3887359 R 232721 CDS YP_987861.1 121595965 4673621 complement(3888528..3889976) 1 NC_008782.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 3889976 4673621 Ajs_3674 Acidovorax sp. JS42 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_987861.1 3888528 R 232721 CDS YP_987862.1 121595966 4673617 complement(3889973..3891478) 1 NC_008782.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 3891478 murE 4673617 murE Acidovorax sp. JS42 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_987862.1 3889973 R 232721 CDS YP_987863.1 121595967 4673611 complement(3891475..3893223) 1 NC_008782.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase; peptidoglycan synthetase FtsI 3893223 4673611 Ajs_3676 Acidovorax sp. JS42 peptidoglycan synthetase FtsI YP_987863.1 3891475 R 232721 CDS YP_987864.1 121595968 4673609 complement(3893220..3893522) 1 NC_008782.1 PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like; cell division protein FtsL 3893522 4673609 Ajs_3677 Acidovorax sp. JS42 cell division protein FtsL YP_987864.1 3893220 R 232721 CDS YP_987865.1 121595969 4673599 complement(3893632..3894558) 1 NC_008782.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rfr:Rfer_3433 methyltransferase; S-adenosyl-methyltransferase MraW 3894558 mraW 4673599 mraW Acidovorax sp. JS42 S-adenosyl-methyltransferase MraW YP_987865.1 3893632 R 232721 CDS YP_987866.1 121595970 4673594 complement(3894568..3894996) 1 NC_008782.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 3894996 4673594 Ajs_3679 Acidovorax sp. JS42 cell division protein MraZ YP_987866.1 3894568 R 232721 CDS YP_987867.1 121595971 4673578 complement(3895262..3896602) 1 NC_008782.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 3896602 hslU 4673578 hslU Acidovorax sp. JS42 ATP-dependent protease ATP-binding subunit HslU YP_987867.1 3895262 R 232721 CDS YP_987868.1 121595972 4673569 complement(3896698..3897279) 1 NC_008782.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 3897279 4673569 Ajs_3681 Acidovorax sp. JS42 ATP-dependent protease peptidase subunit YP_987868.1 3896698 R 232721 CDS YP_987869.1 121595973 4673555 complement(3897337..3899145) 1 NC_008782.1 KEGG: pol:Bpro_1065 hypothetical protein; hypothetical protein 3899145 4673555 Ajs_3682 Acidovorax sp. JS42 hypothetical protein YP_987869.1 3897337 R 232721 CDS YP_987870.1 121595974 4673551 complement(3899199..3900044) 1 NC_008782.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 3900044 4673551 Ajs_3683 Acidovorax sp. JS42 TraR/DksA family transcriptional regulator YP_987870.1 3899199 R 232721 CDS YP_987871.1 121595975 4673548 complement(3900068..3901177) 1 NC_008782.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rfr:Rfer_3439 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K 3901177 4673548 Ajs_3684 Acidovorax sp. JS42 cobalamin synthesis protein, P47K YP_987871.1 3900068 R 232721 CDS YP_987872.1 121595976 4673539 complement(3901285..3902472) 1 NC_008782.1 KEGG: rfr:Rfer_3440 PUA; SAM-dependent methyltransferase 3902472 4673539 Ajs_3685 Acidovorax sp. JS42 SAM-dependent methyltransferase YP_987872.1 3901285 R 232721 CDS YP_987873.1 121595977 4673533 complement(3902564..3903535) 1 NC_008782.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rfr:Rfer_3442 phage integrase; tyrosine recombinase XerC 3903535 4673533 Ajs_3686 Acidovorax sp. JS42 tyrosine recombinase XerC YP_987873.1 3902564 R 232721 CDS YP_987874.1 121595978 4673516 complement(3903635..3904327) 1 NC_008782.1 PFAM: protein of unknown function DUF484; KEGG: rfr:Rfer_3443 hypothetical protein; hypothetical protein 3904327 4673516 Ajs_3687 Acidovorax sp. JS42 hypothetical protein YP_987874.1 3903635 R 232721 CDS YP_987875.1 121595979 4673505 complement(3904324..3905271) 1 NC_008782.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 3905271 dapF 4673505 dapF Acidovorax sp. JS42 diaminopimelate epimerase YP_987875.1 3904324 R 232721 CDS YP_987876.1 121595980 4673488 3905322..3905594 1 NC_008782.1 hypothetical protein 3905594 4673488 Ajs_3689 Acidovorax sp. JS42 hypothetical protein YP_987876.1 3905322 D 232721 CDS YP_987877.1 121595981 4673466 3905677..3905877 1 NC_008782.1 hypothetical protein 3905877 4673466 Ajs_3690 Acidovorax sp. JS42 hypothetical protein YP_987877.1 3905677 D 232721 CDS YP_987878.1 121595982 4673464 3905912..3907618 1 NC_008782.1 PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like; beta-lactamase domain-containing protein 3907618 4673464 Ajs_3691 Acidovorax sp. JS42 beta-lactamase domain-containing protein YP_987878.1 3905912 D 232721 CDS YP_987879.1 121595983 4673458 3907611..3908411 1 NC_008782.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4; RNA-binding S4 domain-containing protein 3908411 4673458 Ajs_3692 Acidovorax sp. JS42 RNA-binding S4 domain-containing protein YP_987879.1 3907611 D 232721 CDS YP_987880.1 121595984 4673446 3908593..3910386 1 NC_008782.1 PFAM: YhhN family protein; KEGG: pfo:Pfl_5467 hypothetical protein; YhhN family protein 3910386 4673446 Ajs_3693 Acidovorax sp. JS42 YhhN family protein YP_987880.1 3908593 D 232721 CDS YP_987881.1 121595985 4673228 complement(3910391..3911461) 1 NC_008782.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3911461 ruvB 4673228 ruvB Acidovorax sp. JS42 Holliday junction DNA helicase RuvB YP_987881.1 3910391 R 232721 CDS YP_987882.1 121595986 4673240 3911686..3912324 1 NC_008782.1 KEGG: reu:Reut_A1751 hypothetical protein; hypothetical protein 3912324 4673240 Ajs_3695 Acidovorax sp. JS42 hypothetical protein YP_987882.1 3911686 D 232721 CDS YP_987883.1 121595987 4673428 3912333..3914243 1 NC_008782.1 KEGG: reu:Reut_A1752 putative heat-shock chaperone protein; putative heat-shock chaperone protein 3914243 4673428 Ajs_3696 Acidovorax sp. JS42 putative heat-shock chaperone protein YP_987883.1 3912333 D 232721 CDS YP_987884.1 121595988 4673425 3914254..3914847 1 NC_008782.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sme:SMc00379 putative oxidoreductase protein; NAD(P)H dehydrogenase (quinone) 3914847 4673425 Ajs_3697 Acidovorax sp. JS42 NAD(P)H dehydrogenase (quinone) YP_987884.1 3914254 D 232721 CDS YP_987885.1 121595989 4673419 3914852..3917722 1 NC_008782.1 KEGG: eba:ebA1979 DnaK-related protein; DnaK-like protein 3917722 4673419 Ajs_3698 Acidovorax sp. JS42 DnaK-like protein YP_987885.1 3914852 D 232721 CDS YP_987886.1 121595990 4673410 complement(3917987..3919438) 1 NC_008782.1 KEGG: xac:XAC2992 endoproteinase Arg-C; endoproteinase Arg-C 3919438 4673410 Ajs_3699 Acidovorax sp. JS42 endoproteinase Arg-C YP_987886.1 3917987 R 232721 CDS YP_987887.1 121595991 4673394 complement(3919477..3920049) 1 NC_008782.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3920049 ruvA 4673394 ruvA Acidovorax sp. JS42 Holliday junction DNA helicase RuvA YP_987887.1 3919477 R 232721 CDS YP_987888.1 121595992 4673370 3920052..3921059 1 NC_008782.1 PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein; PhoH family protein 3921059 4673370 Ajs_3701 Acidovorax sp. JS42 PhoH family protein YP_987888.1 3920052 D 232721 CDS YP_987889.1 121595993 4673368 3921125..3921583 1 NC_008782.1 PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054; hypothetical protein 3921583 4673368 Ajs_3702 Acidovorax sp. JS42 hypothetical protein YP_987889.1 3921125 D 232721 CDS YP_987890.1 121595994 4673340 3921809..3922897 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3922897 4673340 Ajs_3703 Acidovorax sp. JS42 transposase, IS4 family protein YP_987890.1 3921809 D 232721 CDS YP_987891.1 121595995 4673337 3923067..3923843 1 NC_008782.1 PFAM: protein of unknown function DUF81; KEGG: ade:Adeh_2178 protein of unknown function DUF81; hypothetical protein 3923843 4673337 Ajs_3704 Acidovorax sp. JS42 hypothetical protein YP_987891.1 3923067 D 232721 CDS YP_987892.1 121595996 4673328 complement(3923870..3925279) 1 NC_008782.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_0650 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 3925279 4673328 Ajs_3705 Acidovorax sp. JS42 DEAD/DEAH box helicase domain-containing protein YP_987892.1 3923870 R 232721 CDS YP_987893.1 121595997 4673022 complement(3925289..3925753) 1 NC_008782.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 3925753 4673022 Ajs_3706 Acidovorax sp. JS42 D-tyrosyl-tRNA(Tyr) deacylase YP_987893.1 3925289 R 232721 CDS YP_987894.1 121595998 4673021 complement(3925750..3926709) 1 NC_008782.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pol:Bpro_4099 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 3926709 4673021 Ajs_3707 Acidovorax sp. JS42 cation diffusion facilitator family transporter YP_987894.1 3925750 R 232721 CDS YP_987895.1 121595999 4673008 3926730..3928943 1 NC_008782.1 KEGG: dar:Daro_1052 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3928943 4673008 Ajs_3708 Acidovorax sp. JS42 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_987895.1 3926730 D 232721 CDS YP_987896.1 121596000 4672992 3929005..3930486 1 NC_008782.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3930486 4672992 Ajs_3709 Acidovorax sp. JS42 AMP nucleosidase YP_987896.1 3929005 D 232721 CDS YP_987897.1 121596001 4672990 complement(3930559..3931818) 1 NC_008782.1 KEGG: par:Psyc_1092 hypothetical protein; hypothetical protein 3931818 4672990 Ajs_3710 Acidovorax sp. JS42 hypothetical protein YP_987897.1 3930559 R 232721 CDS YP_987898.1 121596002 4672971 3931958..3932929 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related; ABC transporter-like protein 3932929 4672971 Ajs_3711 Acidovorax sp. JS42 ABC transporter-like protein YP_987898.1 3931958 D 232721 CDS YP_987899.1 121596003 4672726 3932931..3933740 1 NC_008782.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC-2 type transporter, NodJ family; ABC transporter 3933740 4672726 Ajs_3712 Acidovorax sp. JS42 ABC transporter YP_987899.1 3932931 D 232721 CDS YP_987900.1 121596004 4672954 3934234..3935580 1 NC_008782.1 PFAM: GAF domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pol:Bpro_0630 putative GAF sensor protein; putative GAF sensor protein 3935580 4672954 Ajs_3714 Acidovorax sp. JS42 putative GAF sensor protein YP_987900.1 3934234 D 232721 CDS YP_987901.1 121596005 4672944 complement(3935601..3936032) 1 NC_008782.1 hypothetical protein 3936032 4672944 Ajs_3715 Acidovorax sp. JS42 hypothetical protein YP_987901.1 3935601 R 232721 CDS YP_987902.1 121596006 4672930 complement(3936029..3936748) 1 NC_008782.1 KEGG: pol:Bpro_0629 hypothetical protein; hypothetical protein 3936748 4672930 Ajs_3716 Acidovorax sp. JS42 hypothetical protein YP_987902.1 3936029 R 232721 CDS YP_987903.1 121596007 4672924 complement(3936924..3938519) 1 NC_008782.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_0572 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase 3938519 4672924 Ajs_3717 Acidovorax sp. JS42 glucose-methanol-choline oxidoreductase YP_987903.1 3936924 R 232721 CDS YP_987904.1 121596008 4672920 3938632..3939480 1 NC_008782.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 3939480 4672920 Ajs_3718 Acidovorax sp. JS42 3-hydroxybutyryl-CoA dehydrogenase YP_987904.1 3938632 D 232721 CDS YP_987905.1 121596009 4672914 3939501..3940292 1 NC_008782.1 PFAM: HpcH/HpaI aldolase; KEGG: reu:Reut_C5927 2-dehydro-3-deoxyglucarate aldolase; 2-dehydro-3-deoxyglucarate aldolase 3940292 4672914 Ajs_3719 Acidovorax sp. JS42 2-dehydro-3-deoxyglucarate aldolase YP_987905.1 3939501 D 232721 CDS YP_987906.1 121596010 4672913 3940759..3942018 1 NC_008782.1 PFAM: protein of unknown function DUF898, transmembrane; KEGG: rme:Rmet_2800 protein of unknown function DUF898, transmembrane; hypothetical protein 3942018 4672913 Ajs_3720 Acidovorax sp. JS42 hypothetical protein YP_987906.1 3940759 D 232721 CDS YP_987907.1 121596011 4672909 3942068..3943201 1 NC_008782.1 PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein; peptidase M48, Ste24p 3943201 4672909 Ajs_3721 Acidovorax sp. JS42 peptidase M48, Ste24p YP_987907.1 3942068 D 232721 CDS YP_987908.1 121596012 4672690 complement(3943658..3943828) 1 NC_008782.1 hypothetical protein 3943828 4672690 Ajs_3722 Acidovorax sp. JS42 hypothetical protein YP_987908.1 3943658 R 232721 CDS YP_987909.1 121596013 4672877 3944072..3944989 1 NC_008782.1 TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_3460 cysteine synthases; cysteine synthase 3944989 4672877 Ajs_3723 Acidovorax sp. JS42 cysteine synthase YP_987909.1 3944072 D 232721 CDS YP_987910.1 121596014 4672855 3945126..3945965 1 NC_008782.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_3616 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 3945965 4672855 Ajs_3724 Acidovorax sp. JS42 endonuclease/exonuclease/phosphatase YP_987910.1 3945126 D 232721 CDS YP_987911.1 121596015 4672847 3945965..3947182 1 NC_008782.1 KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase; cardiolipin synthase 2 3947182 4672847 Ajs_3725 Acidovorax sp. JS42 cardiolipin synthase 2 YP_987911.1 3945965 D 232721 CDS YP_987912.1 121596016 4672689 3947191..3948258 1 NC_008782.1 KEGG: rfr:Rfer_3618 hypothetical protein; hypothetical protein 3948258 4672689 Ajs_3726 Acidovorax sp. JS42 hypothetical protein YP_987912.1 3947191 D 232721 CDS YP_987913.1 121596017 4672834 3948345..3950126 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3950126 4672834 Ajs_3727 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_987913.1 3948345 D 232721 CDS YP_987914.1 121596018 4672803 complement(3950138..3950764) 1 NC_008782.1 PFAM: protein of unknown function UPF0126; KEGG: rxy:Rxyl_2647 protein of unknown function UPF0126; hypothetical protein 3950764 4672803 Ajs_3728 Acidovorax sp. JS42 hypothetical protein YP_987914.1 3950138 R 232721 CDS YP_987915.1 121596019 4672775 complement(3951689..3952621) 1 NC_008782.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 3952621 4672775 Ajs_3730 Acidovorax sp. JS42 electron transfer flavoprotein subunit alpha YP_987915.1 3951689 R 232721 CDS YP_987916.1 121596020 4672771 complement(3952643..3953392) 1 NC_008782.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 3953392 4672771 Ajs_3731 Acidovorax sp. JS42 electron transfer flavoprotein subunit beta YP_987916.1 3952643 R 232721 CDS YP_987917.1 121596021 4672763 complement(3953414..3954388) 1 NC_008782.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bur:Bcep18194_B1554 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 3954388 4672763 Ajs_3732 Acidovorax sp. JS42 2-nitropropane dioxygenase YP_987917.1 3953414 R 232721 CDS YP_987918.1 121596022 4672749 complement(3954400..3955395) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3875 hypothetical protein; hypothetical protein 3955395 4672749 Ajs_3733 Acidovorax sp. JS42 hypothetical protein YP_987918.1 3954400 R 232721 CDS YP_987919.1 121596023 4672378 complement(3955466..3956701) 1 NC_008782.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3874 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3956701 4672378 Ajs_3734 Acidovorax sp. JS42 L-carnitine dehydratase/bile acid-inducible protein F YP_987919.1 3955466 R 232721 CDS YP_987920.1 121596024 4672376 complement(3956737..3957567) 1 NC_008782.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3957567 4672376 Ajs_3735 Acidovorax sp. JS42 enoyl-CoA hydratase YP_987920.1 3956737 R 232721 CDS YP_987921.1 121596025 4672364 complement(3957677..3958807) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2592 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3958807 4672364 Ajs_3736 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987921.1 3957677 R 232721 CDS YP_987922.1 121596026 4672356 complement(3958833..3960044) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_A1390 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3960044 4672356 Ajs_3737 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987922.1 3958833 R 232721 CDS YP_987923.1 121596027 4672330 complement(3960055..3961254) 1 NC_008782.1 KEGG: rfr:Rfer_2594 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 3961254 4672330 Ajs_3738 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_987923.1 3960055 R 232721 CDS YP_987924.1 121596028 4672318 complement(3961397..3963514) 1 NC_008782.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 3963514 4672318 Ajs_3739 Acidovorax sp. JS42 3-hydroxyacyl-CoA dehydrogenase YP_987924.1 3961397 R 232721 CDS YP_987925.1 121596029 4672305 3963647..3964585 1 NC_008782.1 PFAM: regulatory protein, MarR; regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A6222 transcriptional regulator, LysR family; LysR family transcriptional regulator 3964585 4672305 Ajs_3740 Acidovorax sp. JS42 LysR family transcriptional regulator YP_987925.1 3963647 D 232721 CDS YP_987926.1 121596030 4672299 complement(3964599..3964961) 1 NC_008782.1 KEGG: dar:Daro_3332 hypothetical protein; hypothetical protein 3964961 4672299 Ajs_3741 Acidovorax sp. JS42 hypothetical protein YP_987926.1 3964599 R 232721 CDS YP_987927.1 121596031 4672296 complement(3965056..3965934) 1 NC_008782.1 putative metalloprotease; heat shock protein HtpX 3965934 4672296 Ajs_3742 Acidovorax sp. JS42 heat shock protein HtpX YP_987927.1 3965056 R 232721 CDS YP_987928.1 121596032 4672291 complement(3966062..3966835) 1 NC_008782.1 KEGG: pol:Bpro_1031 putative transmembrane protein; hypothetical protein 3966835 4672291 Ajs_3743 Acidovorax sp. JS42 hypothetical protein YP_987928.1 3966062 R 232721 CDS YP_987929.1 121596033 4672290 complement(3966832..3967695) 1 NC_008782.1 PFAM: protein of unknown function DUF88; KEGG: pol:Bpro_1025 protein of unknown function DUF88; hypothetical protein 3967695 4672290 Ajs_3744 Acidovorax sp. JS42 hypothetical protein YP_987929.1 3966832 R 232721 CDS YP_987930.1 121596034 4672286 complement(3967730..3968773) 1 NC_008782.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 3968773 4672286 Ajs_3745 Acidovorax sp. JS42 dihydroorotase YP_987930.1 3967730 R 232721 CDS YP_987931.1 121596035 4672262 complement(3968912..3969475) 1 NC_008782.1 hypothetical protein 3969475 4672262 Ajs_3746 Acidovorax sp. JS42 hypothetical protein YP_987931.1 3968912 R 232721 CDS YP_987932.1 121596036 4672244 complement(3969559..3975384) 1 NC_008782.1 KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; UvrA family protein 3975384 4672244 Ajs_3747 Acidovorax sp. JS42 UvrA family protein YP_987932.1 3969559 R 232721 CDS YP_987933.1 121596037 4672237 3975543..3976655 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3976655 4672237 Ajs_3748 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987933.1 3975543 D 232721 CDS YP_987934.1 121596038 4672236 3976790..3977914 1 NC_008782.1 PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3977914 4672236 Ajs_3749 Acidovorax sp. JS42 extracellular ligand-binding receptor YP_987934.1 3976790 D 232721 CDS YP_987935.1 121596039 4672229 complement(3978001..3978213) 1 NC_008782.1 hypothetical protein 3978213 4672229 Ajs_3750 Acidovorax sp. JS42 hypothetical protein YP_987935.1 3978001 R 232721 CDS YP_987936.1 121596040 4672227 complement(3978311..3979321) 1 NC_008782.1 PFAM: porin, Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin); porin 3979321 4672227 Ajs_3751 Acidovorax sp. JS42 porin YP_987936.1 3978311 R 232721 CDS YP_987937.1 121596041 4672203 complement(3979560..3981254) 1 NC_008782.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_0462 major facilitator superfamily MFS_1; major facilitator superfamily transporter 3981254 4672203 Ajs_3752 Acidovorax sp. JS42 major facilitator superfamily transporter YP_987937.1 3979560 R 232721 CDS YP_987938.1 121596042 4672154 complement(3981701..3982354) 1 NC_008782.1 PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_3816 DsbA oxidoreductase; DSBA oxidoreductase 3982354 4672154 Ajs_3753 Acidovorax sp. JS42 DSBA oxidoreductase YP_987938.1 3981701 R 232721 CDS YP_987939.1 121596043 4672140 complement(3982351..3982635) 1 NC_008782.1 PFAM: protein of unknown function DUF1289; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein; hypothetical protein 3982635 4672140 Ajs_3754 Acidovorax sp. JS42 hypothetical protein YP_987939.1 3982351 R 232721 CDS YP_987940.1 121596044 4671978 complement(3982632..3983120) 1 NC_008782.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated protein 3983120 4671978 Ajs_3755 Acidovorax sp. JS42 YbaK/prolyl-tRNA synthetase associated protein YP_987940.1 3982632 R 232721 CDS YP_987941.1 121596045 4672127 3983234..3984967 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: pae:PA4929 hypothetical protein; diguanylate cyclase 3984967 4672127 Ajs_3756 Acidovorax sp. JS42 diguanylate cyclase YP_987941.1 3983234 D 232721 CDS YP_987942.1 121596046 4672126 complement(3984982..3985896) 1 NC_008782.1 PFAM: pyruvate carboxyltransferase; KEGG: rfr:Rfer_3824 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase 3985896 4672126 Ajs_3757 Acidovorax sp. JS42 hydroxymethylglutaryl-CoA lyase YP_987942.1 3984982 R 232721 CDS YP_987943.1 121596047 4672121 complement(3985925..3986845) 1 NC_008782.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 3986845 4672121 Ajs_3758 Acidovorax sp. JS42 D-isomer specific 2-hydroxyacid dehydrogenase YP_987943.1 3985925 R 232721 CDS YP_987944.1 121596048 4672097 complement(3986884..3988902) 1 NC_008782.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding; 3-methylcrotonoyl-CoA carboxylase subunit alpha 3988902 4672097 Ajs_3759 Acidovorax sp. JS42 3-methylcrotonoyl-CoA carboxylase subunit alpha YP_987944.1 3986884 R 232721 CDS YP_987945.1 121596049 4672085 complement(3988903..3989622) 1 NC_008782.1 KEGG: pol:Bpro_4158 putative transmembrane protein; hypothetical protein 3989622 4672085 Ajs_3760 Acidovorax sp. JS42 hypothetical protein YP_987945.1 3988903 R 232721 CDS YP_987946.1 121596050 4672067 complement(3989629..3990411) 1 NC_008782.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3990411 4672067 Ajs_3761 Acidovorax sp. JS42 enoyl-CoA hydratase YP_987946.1 3989629 R 232721 CDS YP_987947.1 121596051 4672057 complement(3990408..3990917) 1 NC_008782.1 PFAM: DinB family protein; KEGG: bmb:BruAb1_0712 hypothetical protein; DinB family protein 3990917 4672057 Ajs_3762 Acidovorax sp. JS42 DinB family protein YP_987947.1 3990408 R 232721 CDS YP_987948.1 121596052 4672056 complement(3990928..3992532) 1 NC_008782.1 PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase; propionyl-CoA carboxylase 3992532 4672056 Ajs_3763 Acidovorax sp. JS42 propionyl-CoA carboxylase YP_987948.1 3990928 R 232721 CDS YP_987949.1 121596053 4672055 complement(3992547..3994283) 1 NC_008782.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 3994283 4672055 Ajs_3764 Acidovorax sp. JS42 AMP-binding domain-containing protein YP_987949.1 3992547 R 232721 CDS YP_987950.1 121596054 4672054 3994429..3995514 1 NC_008782.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family; AraC family transcriptional regulator 3995514 4672054 Ajs_3765 Acidovorax sp. JS42 AraC family transcriptional regulator YP_987950.1 3994429 D 232721 CDS YP_987951.1 121596055 4671778 complement(3995893..3996873) 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3996873 4671778 Ajs_3766 Acidovorax sp. JS42 transposase, IS4 family protein YP_987951.1 3995893 R 232721 CDS YP_987952.1 121596056 4671770 3997634..3998302 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA4663 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3998302 4671770 Ajs_3767 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_987952.1 3997634 D 232721 CDS YP_987953.1 121596057 4671763 3998347..3999129 1 NC_008782.1 KEGG: dar:Daro_4102 hypothetical protein; hypothetical protein 3999129 4671763 Ajs_3768 Acidovorax sp. JS42 hypothetical protein YP_987953.1 3998347 D 232721 CDS YP_987954.1 121596058 4671758 3999232..4000938 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPOA0130 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 4000938 4671758 Ajs_3769 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_987954.1 3999232 D 232721 CDS YP_987955.1 121596059 4671748 complement(4001058..4001753) 1 NC_008782.1 KEGG: pol:Bpro_0271 hypothetical protein; hypothetical protein 4001753 4671748 Ajs_3770 Acidovorax sp. JS42 hypothetical protein YP_987955.1 4001058 R 232721 CDS YP_987956.1 121596060 4671743 complement(4002057..4002488) 1 NC_008782.1 KEGG: pol:Bpro_4182 hypothetical protein; hypothetical protein 4002488 4671743 Ajs_3771 Acidovorax sp. JS42 hypothetical protein YP_987956.1 4002057 R 232721 CDS YP_987957.1 121596061 4671733 4002804..4004564 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3937 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4004564 4671733 Ajs_3772 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_987957.1 4002804 D 232721 CDS YP_987958.1 121596062 4671731 complement(4004832..4005494) 1 NC_008782.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 4005494 4671731 Ajs_3773 Acidovorax sp. JS42 HAD family hydrolase YP_987958.1 4004832 R 232721 CDS YP_987959.1 121596063 4671715 complement(4005565..4006695) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3838 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 4006695 4671715 Ajs_3774 Acidovorax sp. JS42 acyl-CoA dehydrogenase domain-containing protein YP_987959.1 4005565 R 232721 CDS YP_987960.1 121596064 4671702 complement(4006745..4007413) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4186 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4007413 4671702 Ajs_3775 Acidovorax sp. JS42 short chain dehydrogenase YP_987960.1 4006745 R 232721 CDS YP_987961.1 121596065 4671419 complement(4007516..4008706) 1 NC_008782.1 KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 4008706 4671419 Ajs_3776 Acidovorax sp. JS42 acetyl-CoA acetyltransferase YP_987961.1 4007516 R 232721 CDS YP_987962.1 121596066 4671680 complement(4008703..4010532) 1 NC_008782.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 4010532 aceK 4671680 aceK Acidovorax sp. JS42 bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_987962.1 4008703 R 232721 CDS YP_987963.1 121596067 4671677 complement(4010570..4011232) 1 NC_008782.1 PFAM: carbonic anhydrase; KEGG: rfr:Rfer_3841 carbonate dehydratase; carbonate dehydratase 4011232 4671677 Ajs_3778 Acidovorax sp. JS42 carbonate dehydratase YP_987963.1 4010570 R 232721 CDS YP_987964.1 121596068 4671675 complement(4011288..4012478) 1 NC_008782.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like; isovaleryl-CoA dehydrogenase 4012478 4671675 Ajs_3779 Acidovorax sp. JS42 isovaleryl-CoA dehydrogenase YP_987964.1 4011288 R 232721 CDS YP_987965.1 121596069 4671672 complement(4012608..4013018) 1 NC_008782.1 PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_3843 transcriptional regulator, MerR family; MerR family transcriptional regulator 4013018 4671672 Ajs_3780 Acidovorax sp. JS42 MerR family transcriptional regulator YP_987965.1 4012608 R 232721 CDS YP_987966.1 121596070 4671652 complement(4013322..4014548) 1 NC_008782.1 PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 4014548 4671652 Ajs_3782 Acidovorax sp. JS42 transposase, mutator type YP_987966.1 4013322 R 232721 CDS YP_987967.1 121596071 4671646 4014781..4015593 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB; integrase catalytic subunit 4015593 4671646 Ajs_3784 Acidovorax sp. JS42 integrase catalytic subunit YP_987967.1 4014781 D 232721 CDS YP_987968.1 121596072 4671552 4021542..4023428 1 NC_008782.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related; ABC transporter-like protein 4023428 4671552 Ajs_3785 Acidovorax sp. JS42 ABC transporter-like protein YP_987968.1 4021542 D 232721 CDS YP_987969.1 121596073 4671531 complement(4023438..4024550) 1 NC_008782.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: rfr:Rfer_0571 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 4024550 4671531 Ajs_3786 Acidovorax sp. JS42 response regulator receiver modulated CheB methylesterase YP_987969.1 4023438 R 232721 CDS YP_987970.1 121596074 4671519 complement(4024588..4025325) 1 NC_008782.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 4025325 4671519 Ajs_3787 Acidovorax sp. JS42 chemoreceptor glutamine deamidase CheD YP_987970.1 4024588 R 232721 CDS YP_987971.1 121596075 4671040 complement(4025365..4026258) 1 NC_008782.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; KEGG: rfr:Rfer_0569 MCP methyltransferase, CheR-type; MCP methyltransferase, CheR-type 4026258 4671040 Ajs_3788 Acidovorax sp. JS42 MCP methyltransferase, CheR-type YP_987971.1 4025365 R 232721 CDS YP_987972.1 121596076 4671039 complement(4026307..4026795) 1 NC_008782.1 PFAM: CheW domain protein; KEGG: rfr:Rfer_0568 CheW protein; CheW protein 4026795 4671039 Ajs_3789 Acidovorax sp. JS42 CheW protein YP_987972.1 4026307 R 232721 CDS YP_987973.1 121596077 4671034 complement(4026829..4028961) 1 NC_008782.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0567 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 4028961 4671034 Ajs_3790 Acidovorax sp. JS42 CheA signal transduction histidine kinase YP_987973.1 4026829 R 232721 CDS YP_987974.1 121596078 4671029 complement(4029013..4029375) 1 NC_008782.1 PFAM: response regulator receiver; KEGG: rfr:Rfer_0566 response regulator receiver domain protein; response regulator receiver protein 4029375 4671029 Ajs_3791 Acidovorax sp. JS42 response regulator receiver protein YP_987974.1 4029013 R 232721 CDS YP_987975.1 121596079 4671025 complement(4029444..4029890) 1 NC_008782.1 KEGG: rfr:Rfer_0565 hypothetical protein; hypothetical protein 4029890 4671025 Ajs_3792 Acidovorax sp. JS42 hypothetical protein YP_987975.1 4029444 R 232721 CDS YP_987976.1 121596080 4671021 4030040..4031161 1 NC_008782.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rfr:Rfer_0564 putative signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4031161 4671021 Ajs_3793 Acidovorax sp. JS42 response regulator receiver sensor signal transduction histidine kinase YP_987976.1 4030040 D 232721 CDS YP_987977.1 121596081 4671020 4031158..4031787 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rfr:Rfer_0563 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4031787 4671020 Ajs_3794 Acidovorax sp. JS42 two component LuxR family transcriptional regulator YP_987977.1 4031158 D 232721 CDS YP_987978.1 121596082 4671015 complement(4031886..4032656) 1 NC_008782.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rfr:Rfer_0562 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR 4032656 4671015 Ajs_3795 Acidovorax sp. JS42 flagellar biosynthetic protein FliR YP_987978.1 4031886 R 232721 CDS YP_987979.1 121596083 4671012 complement(4032662..4032931) 1 NC_008782.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: rfr:Rfer_0561 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 4032931 4671012 Ajs_3796 Acidovorax sp. JS42 flagellar biosynthetic protein FliQ YP_987979.1 4032662 R 232721 CDS YP_987980.1 121596084 4670996 complement(4032942..4033697) 1 NC_008782.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4033697 fliP 4670996 fliP Acidovorax sp. JS42 flagellar biosynthesis protein FliP YP_987980.1 4032942 R 232721 CDS YP_987981.1 121596085 4670990 complement(4033690..4034067) 1 NC_008782.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: rfr:Rfer_0559 hypothetical protein; flagellar biosynthesis protein, FliO 4034067 4670990 Ajs_3798 Acidovorax sp. JS42 flagellar biosynthesis protein, FliO YP_987981.1 4033690 R 232721 CDS YP_987982.1 121596086 4670953 complement(4034060..4034509) 1 NC_008782.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN; flagellar motor switch protein FliN 4034509 4670953 Ajs_3799 Acidovorax sp. JS42 flagellar motor switch protein FliN YP_987982.1 4034060 R 232721 CDS YP_987983.1 121596087 4670542 complement(4034499..4035503) 1 NC_008782.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rfr:Rfer_0557 flagellar motor switch protein FliM; flagellar motor switch protein FliM 4035503 4670542 Ajs_3800 Acidovorax sp. JS42 flagellar motor switch protein FliM YP_987983.1 4034499 R 232721 CDS YP_987984.1 121596088 4670942 complement(4035519..4036091) 1 NC_008782.1 PFAM: flagellar basal body-associated protein FliL; KEGG: rfr:Rfer_0556 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 4036091 4670942 Ajs_3801 Acidovorax sp. JS42 flagellar basal body-associated protein FliL YP_987984.1 4035519 R 232721 CDS YP_987985.1 121596089 4670940 complement(4036309..4037619) 1 NC_008782.1 PFAM: flagellar hook-length control protein; KEGG: rfr:Rfer_0555 flagellar hook-length control protein; flagellar hook-length control protein 4037619 4670940 Ajs_3802 Acidovorax sp. JS42 flagellar hook-length control protein YP_987985.1 4036309 R 232721 CDS YP_987986.1 121596090 4670933 complement(4037622..4038086) 1 NC_008782.1 TIGRFAM: flagellar export protein FliJ; KEGG: rfr:Rfer_0554 flagellar export FliJ; flagellar export protein FliJ 4038086 4670933 Ajs_3803 Acidovorax sp. JS42 flagellar export protein FliJ YP_987986.1 4037622 R 232721 CDS YP_987987.1 121596091 4670932 complement(4038114..4039481) 1 NC_008782.1 KEGG: rfr:Rfer_0553 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 4039481 4670932 Ajs_3804 Acidovorax sp. JS42 flagellar protein export ATPase FliI YP_987987.1 4038114 R 232721 CDS YP_987988.1 121596092 4670929 complement(4039507..4040241) 1 NC_008782.1 PFAM: flagellar assembly protein FliH; KEGG: rfr:Rfer_0552 flagellar assembly protein FliH; flagellar assembly protein FliH 4040241 4670929 Ajs_3805 Acidovorax sp. JS42 flagellar assembly protein FliH YP_987988.1 4039507 R 232721 CDS YP_987989.1 121596093 4670915 complement(4040251..4041246) 1 NC_008782.1 PFAM: flagellar motor switch protein FliG; KEGG: rfr:Rfer_0551 flagellar motor switch protein FliG; flagellar motor switch protein FliG 4041246 4670915 Ajs_3806 Acidovorax sp. JS42 flagellar motor switch protein FliG YP_987989.1 4040251 R 232721 CDS YP_987990.1 121596094 4670912 complement(4041280..4042974) 1 NC_008782.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: rfr:Rfer_0550 flagellar M-ring protein FliF; flagellar M-ring protein FliF 4042974 4670912 Ajs_3807 Acidovorax sp. JS42 flagellar M-ring protein FliF YP_987990.1 4041280 R 232721 CDS YP_987991.1 121596095 4670533 4043147..4043458 1 NC_008782.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE 4043458 4670533 Ajs_3808 Acidovorax sp. JS42 flagellar hook-basal body complex subunit FliE YP_987991.1 4043147 D 232721 CDS YP_987992.1 121596096 4670895 complement(4043640..4043939) 1 NC_008782.1 KEGG: rfr:Rfer_0634 flagellar protein FliT; flagellar protein FliT 4043939 4670895 Ajs_3809 Acidovorax sp. JS42 flagellar protein FliT YP_987992.1 4043640 R 232721 CDS YP_987993.1 121596097 4670884 complement(4043942..4044367) 1 NC_008782.1 PFAM: flagellar protein FliS; KEGG: rfr:Rfer_0633 flagellar protein FliS; flagellar protein FliS 4044367 4670884 Ajs_3810 Acidovorax sp. JS42 flagellar protein FliS YP_987993.1 4043942 R 232721 CDS YP_987994.1 121596098 4670877 complement(4044510..4045949) 1 NC_008782.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rfr:Rfer_0632 flagellar hook-associated 2-like; flagellar hook-associated 2 domain-containing protein 4045949 4670877 Ajs_3811 Acidovorax sp. JS42 flagellar hook-associated 2 domain-containing protein YP_987994.1 4044510 R 232721 CDS YP_987995.1 121596099 4670872 complement(4046143..4046982) 1 NC_008782.1 PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein 4046982 4670872 Ajs_3812 Acidovorax sp. JS42 flagellin domain-containing protein YP_987995.1 4046143 R 232721 CDS YP_987996.1 121596100 4670867 complement(4047244..4048083) 1 NC_008782.1 PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein 4048083 4670867 Ajs_3813 Acidovorax sp. JS42 flagellin domain-containing protein YP_987996.1 4047244 R 232721 CDS YP_987997.1 121596101 4670529 complement(4048345..4049181) 1 NC_008782.1 PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein 4049181 4670529 Ajs_3814 Acidovorax sp. JS42 flagellin domain-containing protein YP_987997.1 4048345 R 232721 CDS YP_987998.1 121596102 4670862 4049628..4050488 1 NC_008782.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3702 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4050488 4670862 Ajs_3815 Acidovorax sp. JS42 MotA/TolQ/ExbB proton channel YP_987998.1 4049628 D 232721 CDS YP_987999.1 121596103 4670860 4050515..4051456 1 NC_008782.1 PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_3703 OmpA/MotB; OmpA/MotB domain-containing protein 4051456 4670860 Ajs_3816 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_987999.1 4050515 D 232721 CDS YP_988000.1 121596104 4670852 4051518..4051904 1 NC_008782.1 PFAM: response regulator receiver; KEGG: rfr:Rfer_3704 response regulator receiver domain protein; response regulator receiver protein 4051904 4670852 Ajs_3817 Acidovorax sp. JS42 response regulator receiver protein YP_988000.1 4051518 D 232721 CDS YP_988001.1 121596105 4670846 4051907..4052536 1 NC_008782.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: rfr:Rfer_3705 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 4052536 4670846 Ajs_3818 Acidovorax sp. JS42 chemotaxis phosphatase, CheZ YP_988001.1 4051907 D 232721 CDS YP_988002.1 121596106 4670845 4052759..4053931 1 NC_008782.1 PFAM: type III secretion exporter; KEGG: rfr:Rfer_3706 type III secretion exporter; type III secretion exporter 4053931 4670845 Ajs_3819 Acidovorax sp. JS42 type III secretion exporter YP_988002.1 4052759 D 232721 CDS YP_988003.1 121596107 4670835 4053928..4056012 1 NC_008782.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rfr:Rfer_3707 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 4056012 4670835 Ajs_3820 Acidovorax sp. JS42 flagellar biosynthesis protein FlhA YP_988003.1 4053928 D 232721 CDS YP_988004.1 121596108 4670834 4056009..4057601 1 NC_008782.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: rfr:Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle 4057601 4670834 Ajs_3821 Acidovorax sp. JS42 GTP-binding signal recognition particle YP_988004.1 4056009 D 232721 CDS YP_988005.1 121596109 4670833 4057591..4058388 1 NC_008782.1 KEGG: rfr:Rfer_3709 hypothetical protein; hypothetical protein 4058388 4670833 Ajs_3822 Acidovorax sp. JS42 hypothetical protein YP_988005.1 4057591 D 232721 CDS YP_988006.1 121596110 4670814 4058393..4059106 1 NC_008782.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3710 sigma 28 (flagella/sporulation); FliA/WhiG family RNA polymerase sigma factor 4059106 4670814 Ajs_3823 Acidovorax sp. JS42 FliA/WhiG family RNA polymerase sigma factor YP_988006.1 4058393 D 232721 CDS YP_988007.1 121596111 4670793 complement(4059318..4059674) 1 NC_008782.1 hypothetical protein 4059674 4670793 Ajs_3824 Acidovorax sp. JS42 hypothetical protein YP_988007.1 4059318 R 232721 CDS YP_988008.1 121596112 4670792 complement(4059722..4060045) 1 NC_008782.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: rfr:Rfer_3712 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 4060045 4670792 Ajs_3825 Acidovorax sp. JS42 anti-sigma-28 factor FlgM YP_988008.1 4059722 R 232721 CDS YP_988009.1 121596113 4670788 complement(4060139..4060891) 1 NC_008782.1 PFAM: SAF domain; KEGG: rfr:Rfer_3713 flageller protein FlgA; SAF domain-containing protein 4060891 4670788 Ajs_3826 Acidovorax sp. JS42 SAF domain-containing protein YP_988009.1 4060139 R 232721 CDS YP_988010.1 121596114 4670514 4061078..4061533 1 NC_008782.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3714 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 4061533 4670514 Ajs_3827 Acidovorax sp. JS42 flagellar basal-body rod protein FlgB YP_988010.1 4061078 D 232721 CDS YP_988011.1 121596115 4670751 4061555..4061959 1 NC_008782.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3715 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 4061959 4670751 Ajs_3828 Acidovorax sp. JS42 flagellar basal-body rod protein FlgC YP_988011.1 4061555 D 232721 CDS YP_988012.1 121596116 4670750 4061981..4062631 1 NC_008782.1 PFAM: flagellar hook capping protein; KEGG: rfr:Rfer_3716 flagellar hook capping protein; flagellar hook capping protein 4062631 4670750 Ajs_3829 Acidovorax sp. JS42 flagellar hook capping protein YP_988012.1 4061981 D 232721 CDS YP_988013.1 121596117 4670741 4062660..4064276 1 NC_008782.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dar:Daro_0752 flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE; hypothetical protein 4064276 4670741 Ajs_3830 Acidovorax sp. JS42 hypothetical protein YP_988013.1 4062660 D 232721 CDS YP_988014.1 121596118 4670736 4064303..4065043 1 NC_008782.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3718 flagellar basal-body rod FlgF; flagellar basal-body rod protein FlgF 4065043 4670736 Ajs_3831 Acidovorax sp. JS42 flagellar basal-body rod protein FlgF YP_988014.1 4064303 D 232721 CDS YP_988015.1 121596119 4670734 4065062..4065844 1 NC_008782.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3719 flagellar basal-body rod FlgG; flagellar basal-body rod protein FlgG 4065844 4670734 Ajs_3832 Acidovorax sp. JS42 flagellar basal-body rod protein FlgG YP_988015.1 4065062 D 232721 CDS YP_988016.1 121596120 4670726 4065868..4066584 1 NC_008782.1 PFAM: flagellar L-ring protein; KEGG: rfr:Rfer_3720 flagellar L-ring protein; flagellar L-ring protein 4066584 4670726 Ajs_3833 Acidovorax sp. JS42 flagellar L-ring protein YP_988016.1 4065868 D 232721 CDS YP_988017.1 121596121 4670717 4066585..4067565 1 NC_008782.1 KEGG: bba:Bd2659 hypothetical protein; hypothetical protein 4067565 4670717 Ajs_3834 Acidovorax sp. JS42 hypothetical protein YP_988017.1 4066585 D 232721 CDS YP_988018.1 121596122 4670715 4067743..4068867 1 NC_008782.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4068867 flgI 4670715 flgI Acidovorax sp. JS42 flagellar basal body P-ring protein YP_988018.1 4067743 D 232721 CDS YP_988019.1 121596123 4670711 4068920..4069894 1 NC_008782.1 KEGG: rfr:Rfer_3722 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 4069894 4670711 Ajs_3836 Acidovorax sp. JS42 flagellar rod assembly protein/muramidase FlgJ YP_988019.1 4068920 D 232721 CDS YP_988020.1 121596124 4670509 4069921..4071996 1 NC_008782.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3723 flagellar hook-associated protein; flagellar hook-associated protein FlgK 4071996 4670509 Ajs_3837 Acidovorax sp. JS42 flagellar hook-associated protein FlgK YP_988020.1 4069921 D 232721 CDS YP_988021.1 121596125 4670684 4072008..4073270 1 NC_008782.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like; flagellar hook-associated protein 3 4073270 4670684 Ajs_3838 Acidovorax sp. JS42 flagellar hook-associated protein 3 YP_988021.1 4072008 D 232721 CDS YP_988022.1 121596126 4670680 4073359..4074570 1 NC_008782.1 PFAM: HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain); putative signal transduction protein 4074570 4670680 Ajs_3839 Acidovorax sp. JS42 putative signal transduction protein YP_988022.1 4073359 D 232721 CDS YP_988023.1 121596127 4670678 4074587..4076047 1 NC_008782.1 PFAM: sodium:neurotransmitter symporter; KEGG: rfr:Rfer_2107 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 4076047 4670678 Ajs_3840 Acidovorax sp. JS42 sodium:neurotransmitter symporter YP_988023.1 4074587 D 232721 CDS YP_988024.1 121596128 4670676 4076186..4077706 1 NC_008782.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bam:Bamb_4936 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4077706 4670676 Ajs_3841 Acidovorax sp. JS42 2-nitropropane dioxygenase YP_988024.1 4076186 D 232721 CDS YP_988025.1 121596129 4670666 complement(4077756..4079213) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family; GntR family transcriptional regulator 4079213 4670666 Ajs_3842 Acidovorax sp. JS42 GntR family transcriptional regulator YP_988025.1 4077756 R 232721 CDS YP_988026.1 121596130 4670504 4079358..4079957 1 NC_008782.1 KEGG: pol:Bpro_4234 hypothetical protein; hypothetical protein 4079957 4670504 Ajs_3843 Acidovorax sp. JS42 hypothetical protein YP_988026.1 4079358 D 232721 CDS YP_988027.1 121596131 4670639 4080026..4080970 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane; hypothetical protein 4080970 4670639 Ajs_3844 Acidovorax sp. JS42 hypothetical protein YP_988027.1 4080026 D 232721 CDS YP_988028.1 121596132 4673717 4081034..4082314 1 NC_008782.1 PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II; GntR family transcriptional regulator 4082314 4673717 Ajs_3845 Acidovorax sp. JS42 GntR family transcriptional regulator YP_988028.1 4081034 D 232721 CDS YP_988029.1 121596133 4670603 4082428..4083303 1 NC_008782.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pfl:PFL_2288 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 4083303 4670603 Ajs_3846 Acidovorax sp. JS42 PhzF family phenazine biosynthesis protein YP_988029.1 4082428 D 232721 CDS YP_988030.1 121596134 4670609 4083300..4084274 1 NC_008782.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_4245 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 4084274 4670609 Ajs_3847 Acidovorax sp. JS42 hypothetical protein YP_988030.1 4083300 D 232721 CDS YP_988031.1 121596135 4670606 4084452..4085540 1 NC_008782.1 KEGG: reu:Reut_B3888 hypothetical protein; hypothetical protein 4085540 4670606 Ajs_3848 Acidovorax sp. JS42 hypothetical protein YP_988031.1 4084452 D 232721 CDS YP_988032.1 121596136 4670608 4085574..4086752 1 NC_008782.1 KEGG: reu:Reut_B3887 possible UreA/short-chain amide ABC transporter; putative UreA/short-chain amide ABC transporter 4086752 4670608 Ajs_3849 Acidovorax sp. JS42 putative UreA/short-chain amide ABC transporter YP_988032.1 4085574 D 232721 CDS YP_988033.1 121596137 4670605 4087098..4088219 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0869 hypothetical protein; short-chain dehydrogenase/reductase SDR 4088219 4670605 Ajs_3850 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_988033.1 4087098 D 232721 CDS YP_988034.1 121596138 4671183 4088280..4088951 1 NC_008782.1 PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_3732 phosphoglycerate mutase; phosphoglycerate mutase 4088951 4671183 Ajs_3851 Acidovorax sp. JS42 phosphoglycerate mutase YP_988034.1 4088280 D 232721 CDS YP_988035.1 121596139 4671182 complement(4089017..4089886) 1 NC_008782.1 PFAM: Creatininase; KEGG: rfr:Rfer_3746 creatininase; creatininase 4089886 4671182 Ajs_3852 Acidovorax sp. JS42 creatininase YP_988035.1 4089017 R 232721 CDS YP_988036.1 121596140 4671126 4089895..4090647 1 NC_008782.1 PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: bam:Bamb_2316 threonyl/alanyl tRNA synthetase, SAD; metal-dependent hydrolases related to alanyl-tRNA synthetase 4090647 4671126 Ajs_3853 Acidovorax sp. JS42 metal-dependent hydrolases related to alanyl-tRNA synthetase YP_988036.1 4089895 D 232721 CDS YP_988037.1 121596141 4671260 4090700..4092916 1 NC_008782.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_0748 cytochrome c biogenesis protein, transmembrane protein; cytochrome c biogenesis protein transmembrane subunit 4092916 4671260 Ajs_3854 Acidovorax sp. JS42 cytochrome c biogenesis protein transmembrane subunit YP_988037.1 4090700 D 232721 CDS YP_988038.1 121596142 4671513 complement(4092917..4093963) 1 NC_008782.1 PFAM: protein of unknown function DUF323; KEGG: rba:RB8026 hypothetical protein; hypothetical protein 4093963 4671513 Ajs_3855 Acidovorax sp. JS42 hypothetical protein YP_988038.1 4092917 R 232721 CDS YP_988039.1 121596143 4671514 4094145..4095395 1 NC_008782.1 PFAM: Na+/H+ antiporter NhaA; KEGG: nwi:Nwi_2853 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 4095395 4671514 Ajs_3856 Acidovorax sp. JS42 Na+/H+ antiporter NhaA YP_988039.1 4094145 D 232721 CDS YP_988040.1 121596144 4671512 4095445..4095960 1 NC_008782.1 PFAM: CoA-binding domain protein; KEGG: rfr:Rfer_0747 CoA-binding; CoA-binding domain-containing protein 4095960 4671512 Ajs_3857 Acidovorax sp. JS42 CoA-binding domain-containing protein YP_988040.1 4095445 D 232721 CDS YP_988041.1 121596145 4671837 4096015..4097340 1 NC_008782.1 KEGG: sus:Acid_5487 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 4097340 4671837 Ajs_3858 Acidovorax sp. JS42 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_988041.1 4096015 D 232721 CDS YP_988042.1 121596146 4671838 complement(4097393..4098376) 1 NC_008782.1 PFAM: Integral membrane protein TerC; KEGG: xcb:XC_4321 export protein; integral membrane protein TerC 4098376 4671838 Ajs_3859 Acidovorax sp. JS42 integral membrane protein TerC YP_988042.1 4097393 R 232721 CDS YP_988043.1 121596147 4671395 4098504..4099430 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eba:ebA2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 4099430 4671395 Ajs_3860 Acidovorax sp. JS42 LysR family transcriptional regulator YP_988043.1 4098504 D 232721 CDS YP_988044.1 121596148 4671255 4099532..4100644 1 NC_008782.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4100644 hemE 4671255 hemE Acidovorax sp. JS42 uroporphyrinogen decarboxylase YP_988044.1 4099532 D 232721 CDS YP_988045.1 121596149 4671736 4101249..4103468 1 NC_008782.1 KEGG: rfr:Rfer_0822 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 4103468 4671736 Ajs_3862 Acidovorax sp. JS42 primosomal protein N' YP_988045.1 4101249 D 232721 CDS YP_988046.1 121596150 4671813 4103607..4104707 1 NC_008782.1 KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginases 4104707 4671813 Ajs_3863 Acidovorax sp. JS42 L-asparaginases YP_988046.1 4103607 D 232721 CDS YP_988047.1 121596151 4671941 complement(4104916..4105872) 1 NC_008782.1 PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier; auxin efflux carrier 4105872 4671941 Ajs_3864 Acidovorax sp. JS42 auxin efflux carrier YP_988047.1 4104916 R 232721 CDS YP_988048.1 121596152 4672048 4106049..4108118 1 NC_008782.1 PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase; UvrD/REP helicase 4108118 4672048 Ajs_3865 Acidovorax sp. JS42 UvrD/REP helicase YP_988048.1 4106049 D 232721 CDS YP_988049.1 121596153 4671986 4108123..4108557 1 NC_008782.1 KEGG: pol:Bpro_4283 hypothetical protein; hypothetical protein 4108557 4671986 Ajs_3866 Acidovorax sp. JS42 hypothetical protein YP_988049.1 4108123 D 232721 CDS YP_988050.1 121596154 4672469 4108563..4109780 1 NC_008782.1 PFAM: phospholipase A1; KEGG: rfr:Rfer_0525 phospholipase; phospholipase A1 4109780 4672469 Ajs_3867 Acidovorax sp. JS42 phospholipase A1 YP_988050.1 4108563 D 232721 CDS YP_988051.1 121596155 4672468 4110022..4110408 1 NC_008782.1 KEGG: rfr:Rfer_0375 hypothetical protein; hypothetical protein 4110408 4672468 Ajs_3868 Acidovorax sp. JS42 hypothetical protein YP_988051.1 4110022 D 232721 CDS YP_988052.1 121596156 4672470 complement(4110484..4110972) 1 NC_008782.1 PFAM: UspA domain protein; KEGG: rfr:Rfer_1666 UspA; UspA domain-containing protein 4110972 4672470 Ajs_3869 Acidovorax sp. JS42 UspA domain-containing protein YP_988052.1 4110484 R 232721 CDS YP_988053.1 121596157 4672402 4111075..4112247 1 NC_008782.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 4112247 tgt 4672402 tgt Acidovorax sp. JS42 queuine tRNA-ribosyltransferase YP_988053.1 4111075 D 232721 CDS YP_988054.1 121596158 4672475 4112327..4112938 1 NC_008782.1 PFAM: protein of unknown function DUF72; KEGG: xac:XAC0605 hypothetical protein; hypothetical protein 4112938 4672475 Ajs_3871 Acidovorax sp. JS42 hypothetical protein YP_988054.1 4112327 D 232721 CDS YP_988055.1 121596159 4672522 complement(4113074..4114234) 1 NC_008782.1 KEGG: pol:Bpro_0461 hypothetical protein; hypothetical protein 4114234 4672522 Ajs_3872 Acidovorax sp. JS42 hypothetical protein YP_988055.1 4113074 R 232721 CDS YP_988056.1 121596160 4672742 complement(4114313..4115113) 1 NC_008782.1 KEGG: pol:Bpro_0460 hypothetical protein; hypothetical protein 4115113 4672742 Ajs_3873 Acidovorax sp. JS42 hypothetical protein YP_988056.1 4114313 R 232721 CDS YP_988057.1 121596161 4672744 complement(4115116..4115574) 1 NC_008782.1 KEGG: pol:Bpro_0459 hypothetical protein; hypothetical protein 4115574 4672744 Ajs_3874 Acidovorax sp. JS42 hypothetical protein YP_988057.1 4115116 R 232721 CDS YP_988058.1 121596162 4673093 complement(4115598..4116206) 1 NC_008782.1 KEGG: pol:Bpro_0458 hypothetical protein; hypothetical protein 4116206 4673093 Ajs_3875 Acidovorax sp. JS42 hypothetical protein YP_988058.1 4115598 R 232721 CDS YP_988059.1 121596163 4673096 complement(4116209..4116784) 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: bpm:BURPS1710b_A0345 Lrp regulator; AsnC family transcriptional regulator 4116784 4673096 Ajs_3876 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_988059.1 4116209 R 232721 CDS YP_988060.1 121596164 4673097 4116805..4117875 1 NC_008782.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase 4117875 4673097 Ajs_3877 Acidovorax sp. JS42 1-aminocyclopropane-1-carboxylate deaminase YP_988060.1 4116805 D 232721 CDS YP_988061.1 121596165 4672655 complement(4117915..4119870) 1 NC_008782.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4119870 4672655 Ajs_3878 Acidovorax sp. JS42 phospholipid/glycerol acyltransferase YP_988061.1 4117915 R 232721 CDS YP_988062.1 121596166 4672838 4120005..4120748 1 NC_008782.1 SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family; XRE family transcriptional regulator 4120748 4672838 Ajs_3879 Acidovorax sp. JS42 XRE family transcriptional regulator YP_988062.1 4120005 D 232721 CDS YP_988063.1 121596167 4672919 complement(4120767..4121207) 1 NC_008782.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: ade:Adeh_1418 zinc-binding alcohol dehydrogenase; alcohol dehydrogenase 4121207 4672919 Ajs_3880 Acidovorax sp. JS42 alcohol dehydrogenase YP_988063.1 4120767 R 232721 CDS YP_988064.1 121596168 4673076 complement(4121233..4121640) 1 NC_008782.1 KEGG: pol:Bpro_3367 hypothetical protein; hypothetical protein 4121640 4673076 Ajs_3881 Acidovorax sp. JS42 hypothetical protein YP_988064.1 4121233 R 232721 CDS YP_988065.1 121596169 4673179 4122003..4122419 1 NC_008782.1 KEGG: bam:Bamb_3919 hypothetical protein; hypothetical protein 4122419 4673179 Ajs_3882 Acidovorax sp. JS42 hypothetical protein YP_988065.1 4122003 D 232721 CDS YP_988066.1 121596170 4673321 4122586..4123572 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0548 hypothetical protein; hypothetical protein 4123572 4673321 Ajs_3883 Acidovorax sp. JS42 hypothetical protein YP_988066.1 4122586 D 232721 CDS YP_988067.1 121596171 4673322 4123605..4125083 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_A1449 putative transmembrane oxidoreductase protein; FAD dependent oxidoreductase 4125083 4673322 Ajs_3884 Acidovorax sp. JS42 FAD dependent oxidoreductase YP_988067.1 4123605 D 232721 CDS YP_988068.1 121596172 4673319 4125080..4126189 1 NC_008782.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc1888 hypothetical protein; peroxidase-like protein 4126189 4673319 Ajs_3885 Acidovorax sp. JS42 peroxidase-like protein YP_988068.1 4125080 D 232721 CDS YP_988069.1 121596173 4673848 4126566..4127876 1 NC_008782.1 PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_3842 FAD dependent oxidoreductase; D-amino-acid dehydrogenase 4127876 4673848 Ajs_3886 Acidovorax sp. JS42 D-amino-acid dehydrogenase YP_988069.1 4126566 D 232721 CDS YP_988070.1 121596174 4673777 complement(4127948..4129213) 1 NC_008782.1 PFAM: domain of unknown function DUF1745; KEGG: rfr:Rfer_0622 hypothetical protein; hypothetical protein 4129213 4673777 Ajs_3887 Acidovorax sp. JS42 hypothetical protein YP_988070.1 4127948 R 232721 CDS YP_988071.1 121596175 4673846 complement(4129254..4130225) 1 NC_008782.1 KEGG: pol:Bpro_0449 hypothetical protein; hypothetical protein 4130225 4673846 Ajs_3888 Acidovorax sp. JS42 hypothetical protein YP_988071.1 4129254 R 232721 CDS YP_988072.1 121596176 4673963 4130446..4130865 1 NC_008782.1 PFAM: histone family protein DNA-binding protein; KEGG: bte:BTH_II0701 DNA-binding protein BpH2; histone family protein DNA-binding protein 4130865 4673963 Ajs_3889 Acidovorax sp. JS42 histone family protein DNA-binding protein YP_988072.1 4130446 D 232721 CDS YP_988073.1 121596177 4673952 complement(4130951..4131703) 1 NC_008782.1 KEGG: bja:bll4165 hypothetical protein; protein tyrosine/serine phosphatase 4131703 4673952 Ajs_3890 Acidovorax sp. JS42 protein tyrosine/serine phosphatase YP_988073.1 4130951 R 232721 CDS YP_988074.1 121596178 4674590 complement(4132165..4132863) 1 NC_008782.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: rfr:Rfer_3587 response regulator receiver domain protein; two component Fis family transcriptional regulator 4132863 4674590 Ajs_3891 Acidovorax sp. JS42 two component Fis family transcriptional regulator YP_988074.1 4132165 R 232721 CDS YP_988075.1 121596179 4673696 complement(4132900..4135188) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 4135188 4673696 Ajs_3892 Acidovorax sp. JS42 multi-sensor signal transduction histidine kinase YP_988075.1 4132900 R 232721 CDS YP_988076.1 121596180 4673637 complement(4135185..4135856) 1 NC_008782.1 KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein; hypothetical protein 4135856 4673637 Ajs_3893 Acidovorax sp. JS42 hypothetical protein YP_988076.1 4135185 R 232721 CDS YP_988077.1 121596181 4673470 complement(4135807..4137180) 1 NC_008782.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3590 sun protein; sun protein 4137180 4673470 Ajs_3894 Acidovorax sp. JS42 sun protein YP_988077.1 4135807 R 232721 CDS YP_988078.1 121596182 4673211 complement(4137177..4137755) 1 NC_008782.1 KEGG: pol:Bpro_4440 LemA; hypothetical protein 4137755 4673211 Ajs_3895 Acidovorax sp. JS42 hypothetical protein YP_988078.1 4137177 R 232721 CDS YP_988079.1 121596183 4673219 complement(4137896..4142125) 1 NC_008782.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4142125 4673219 Ajs_3896 Acidovorax sp. JS42 DNA-directed RNA polymerase subunit beta' YP_988079.1 4137896 R 232721 CDS YP_988080.1 121596184 4673222 complement(4142256..4146380) 1 NC_008782.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4146380 rpoB 4673222 rpoB Acidovorax sp. JS42 DNA-directed RNA polymerase subunit beta YP_988080.1 4142256 R 232721 CDS YP_988081.1 121596185 4672951 complement(4146654..4147034) 1 NC_008782.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4147034 rplL 4672951 rplL Acidovorax sp. JS42 50S ribosomal protein L7/L12 YP_988081.1 4146654 R 232721 CDS YP_988082.1 121596186 4672772 complement(4147084..4147590) 1 NC_008782.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4147590 rplJ 4672772 rplJ Acidovorax sp. JS42 50S ribosomal protein L10 YP_988082.1 4147084 R 232721 CDS YP_988083.1 121596187 4672641 complement(4147834..4148529) 1 NC_008782.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4148529 rplA 4672641 rplA Acidovorax sp. JS42 50S ribosomal protein L1 YP_988083.1 4147834 R 232721 CDS YP_988084.1 121596188 4672646 complement(4148530..4148961) 1 NC_008782.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4148961 rplK 4672646 rplK Acidovorax sp. JS42 50S ribosomal protein L11 YP_988084.1 4148530 R 232721 CDS YP_988085.1 121596189 4672660 complement(4149071..4149661) 1 NC_008782.1 KEGG: rfr:Rfer_3597 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein nusG 4149661 4672660 Ajs_3902 Acidovorax sp. JS42 transcription antitermination protein nusG YP_988085.1 4149071 R 232721 CDS YP_988086.1 121596190 4672021 complement(4149661..4150044) 1 NC_008782.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4150044 secE 4672021 secE Acidovorax sp. JS42 preprotein translocase subunit SecE YP_988086.1 4149661 R 232721 CDS YP_988087.1 121596191 4671930 complement(4150221..4151411) 1 NC_008782.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4151411 4671930 Ajs_3904 Acidovorax sp. JS42 elongation factor Tu YP_988087.1 4150221 R 232721 CDS YP_988088.1 121596192 4671423 4152029..4152352 1 NC_008782.1 PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911; transposase IS3/IS911 family protein 4152352 4671423 Ajs_3905 Acidovorax sp. JS42 transposase IS3/IS911 family protein YP_988088.1 4152029 D 232721 CDS YP_988089.1 121596193 4671560 complement(4159212..4160162) 1 NC_008782.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 4160162 4671560 Ajs_3907 Acidovorax sp. JS42 glutathione synthetase YP_988089.1 4159212 R 232721 CDS YP_988090.1 121596194 4672118 complement(4160198..4161406) 1 NC_008782.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcb:XC_4240 benzoate transporter; benzoate transporter 4161406 4672118 Ajs_3908 Acidovorax sp. JS42 benzoate transporter YP_988090.1 4160198 R 232721 CDS YP_988091.1 121596195 4672185 complement(4161510..4163378) 1 NC_008782.1 PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter; K+ potassium transporter 4163378 4672185 Ajs_3909 Acidovorax sp. JS42 K+ potassium transporter YP_988091.1 4161510 R 232721 CDS YP_988092.1 121596196 4672259 complement(4163519..4164814) 1 NC_008782.1 TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA; glutamate--cysteine ligase 4164814 4672259 Ajs_3910 Acidovorax sp. JS42 glutamate--cysteine ligase YP_988092.1 4163519 R 232721 CDS YP_988093.1 121596197 4672341 complement(4164879..4166345) 1 NC_008782.1 PFAM: cation transporter; KEGG: bbr:BB0267 Trk system potassium uptake protein; cation transporter 4166345 4672341 Ajs_3911 Acidovorax sp. JS42 cation transporter YP_988093.1 4164879 R 232721 CDS YP_988094.1 121596198 4672752 complement(4166361..4167815) 1 NC_008782.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 4167815 trkA 4672752 trkA Acidovorax sp. JS42 potassium transporter peripheral membrane component YP_988094.1 4166361 R 232721 CDS YP_988095.1 121596199 4672840 complement(4167880..4169160) 1 NC_008782.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 4169160 proA 4672840 proA Acidovorax sp. JS42 gamma-glutamyl phosphate reductase YP_988095.1 4167880 R 232721 CDS YP_988096.1 121596200 4672875 4169251..4169544 1 NC_008782.1 KEGG: pol:Bpro_3478 hypothetical protein; hypothetical protein 4169544 4672875 Ajs_3914 Acidovorax sp. JS42 hypothetical protein YP_988096.1 4169251 D 232721 CDS YP_988097.1 121596201 4672901 complement(4169601..4170647) 1 NC_008782.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 4170647 holA 4672901 holA Acidovorax sp. JS42 DNA polymerase III subunit delta YP_988097.1 4169601 R 232721 CDS YP_988098.1 121596202 4673375 complement(4170721..4171230) 1 NC_008782.1 PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B; rare lipoprotein B 4171230 4673375 Ajs_3916 Acidovorax sp. JS42 rare lipoprotein B YP_988098.1 4170721 R 232721 CDS YP_988099.1 121596203 4673423 complement(4171244..4173976) 1 NC_008782.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 4173976 leuS 4673423 leuS Acidovorax sp. JS42 leucyl-tRNA synthetase YP_988099.1 4171244 R 232721 CDS YP_988100.1 121596204 4673450 4174129..4175217 1 NC_008782.1 PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 4175217 4673450 Ajs_3918 Acidovorax sp. JS42 transposase, IS4 family protein YP_988100.1 4174129 D 232721 CDS YP_988101.1 121596205 4673491 4175445..4176725 1 NC_008782.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pfl:PFL_1548 mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 4176725 4673491 Ajs_3919 Acidovorax sp. JS42 mechanosensitive ion channel protein MscS YP_988101.1 4175445 D 232721 CDS YP_988102.1 121596206 4673584 complement(4176810..4177250) 1 NC_008782.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4177250 4673584 Ajs_3920 Acidovorax sp. JS42 biopolymer transport protein ExbD/TolR YP_988102.1 4176810 R 232721 CDS YP_988103.1 121596207 4673648 complement(4177265..4177924) 1 NC_008782.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4177924 4673648 Ajs_3921 Acidovorax sp. JS42 MotA/TolQ/ExbB proton channel YP_988103.1 4177265 R 232721 CDS YP_988104.1 121596208 4673307 complement(4177932..4178753) 1 NC_008782.1 PFAM: dihydrodipicolinate reductase; KEGG: pol:Bpro_4608 dihydrodipicolinate reductase; dihydrodipicolinate reductase 4178753 4673307 Ajs_3922 Acidovorax sp. JS42 dihydrodipicolinate reductase YP_988104.1 4177932 R 232721 CDS YP_988105.1 121596209 4674023 complement(4178830..4179381) 1 NC_008782.1 PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA; SmpA/OmlA domain-containing protein 4179381 4674023 Ajs_3923 Acidovorax sp. JS42 SmpA/OmlA domain-containing protein YP_988105.1 4178830 R 232721 CDS YP_988106.1 121596210 4674293 4179450..4179899 1 NC_008782.1 PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family; ferric uptake regulator family protein 4179899 4674293 Ajs_3924 Acidovorax sp. JS42 ferric uptake regulator family protein YP_988106.1 4179450 D 232721 CDS YP_988107.1 121596211 4674371 complement(4179913..4180869) 1 NC_008782.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 4180869 4674371 Ajs_3925 Acidovorax sp. JS42 HPr kinase/phosphorylase YP_988107.1 4179913 R 232721 CDS YP_988108.1 121596212 4674469 complement(4180891..4181358) 1 NC_008782.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN 4181358 4674469 Ajs_3926 Acidovorax sp. JS42 PTS IIA-like nitrogen-regulatory protein PtsN YP_988108.1 4180891 R 232721 CDS YP_988109.1 121596213 4670593 complement(4181492..4181845) 1 NC_008782.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rfr:Rfer_0750 sigma 54 modulation protein/ribosomal protein S30EA; SSU ribosomal protein S30P / sigma 54 modulation protein 4181845 4670593 Ajs_3927 Acidovorax sp. JS42 SSU ribosomal protein S30P / sigma 54 modulation protein YP_988109.1 4181492 R 232721 CDS YP_988110.1 121596214 4674025 4182222..4183142 1 NC_008782.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4183142 4674025 Ajs_3928 Acidovorax sp. JS42 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_988110.1 4182222 D 232721 CDS YP_988111.1 121596215 4673915 complement(4183196..4185304) 1 NC_008782.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2549 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor 4185304 4673915 Ajs_3929 Acidovorax sp. JS42 TonB-dependent siderophore receptor YP_988111.1 4183196 R 232721 CDS YP_988112.1 121596216 4673888 complement(4185786..4186610) 1 NC_008782.1 PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein; hypothetical protein 4186610 4673888 Ajs_3930 Acidovorax sp. JS42 hypothetical protein YP_988112.1 4185786 R 232721 CDS YP_988113.1 121596217 4673928 complement(4186652..4187560) 1 NC_008782.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin; thioredoxin 4187560 4673928 Ajs_3931 Acidovorax sp. JS42 thioredoxin YP_988113.1 4186652 R 232721 CDS YP_988114.1 121596218 4673911 4187745..4188326 1 NC_008782.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein; PfpI family intracellular peptidase 4188326 4673911 Ajs_3932 Acidovorax sp. JS42 PfpI family intracellular peptidase YP_988114.1 4187745 D 232721 CDS YP_988115.1 121596219 4673836 4188426..4188803 1 NC_008782.1 KEGG: rso:RSc0415 hypothetical protein; hypothetical protein 4188803 4673836 Ajs_3933 Acidovorax sp. JS42 hypothetical protein YP_988115.1 4188426 D 232721 CDS YP_988116.1 121596220 4673775 4188875..4189372 1 NC_008782.1 KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 4189372 4673775 Ajs_3934 Acidovorax sp. JS42 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_988116.1 4188875 D 232721 CDS YP_988117.1 121596221 4673731 4189369..4190544 1 NC_008782.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase 4190544 4673731 Ajs_3935 Acidovorax sp. JS42 phosphoribosylaminoimidazole carboxylase ATPase YP_988117.1 4189369 D 232721 CDS YP_988118.1 121596222 4673625 4190556..4191554 1 NC_008782.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC; translation factor SUA5 4191554 4673625 Ajs_3936 Acidovorax sp. JS42 translation factor SUA5 YP_988118.1 4190556 D 232721 CDS YP_988119.1 121596223 4673556 4191627..4192580 1 NC_008782.1 KEGG: bpm:BURPS1710b_1005 lipase; lipase 4192580 4673556 Ajs_3937 Acidovorax sp. JS42 lipase YP_988119.1 4191627 D 232721 CDS YP_988120.1 121596224 4673455 complement(4192724..4193266) 1 NC_008782.1 KEGG: rfr:Rfer_0193 hypothetical protein; hypothetical protein 4193266 4673455 Ajs_3938 Acidovorax sp. JS42 hypothetical protein YP_988120.1 4192724 R 232721 CDS YP_988121.1 121596225 4673968 complement(4193452..4194933) 1 NC_008782.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; D-alanyl-D-alanine carboxypeptidase PBP3 4194933 4673968 Ajs_3939 Acidovorax sp. JS42 D-alanyl-D-alanine carboxypeptidase PBP3 YP_988121.1 4193452 R 232721 CDS YP_988122.1 121596226 4673206 4194984..4195694 1 NC_008782.1 PFAM: peptidase M22, glycoprotease; KEGG: rfr:Rfer_0189 peptidase M22, glycoprotease; peptidase M22, glycoprotease 4195694 4673206 Ajs_3940 Acidovorax sp. JS42 peptidase M22, glycoprotease YP_988122.1 4194984 D 232721 CDS YP_988123.1 121596227 4673138 4195691..4196167 1 NC_008782.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_0188 ribosomal-protein-alanine acetyltransferase; SSU ribosomal protein S18P alanine acetyltransferase 4196167 4673138 Ajs_3941 Acidovorax sp. JS42 SSU ribosomal protein S18P alanine acetyltransferase YP_988123.1 4195691 D 232721 CDS YP_988124.1 121596228 4673079 4196164..4196940 1 NC_008782.1 KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 4196940 4673079 Ajs_3942 Acidovorax sp. JS42 phage SPO1 DNA polymerase-like protein YP_988124.1 4196164 D 232721 CDS YP_988125.1 121596229 4673055 4197120..4197614 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4197614 4673055 Ajs_3943 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_988125.1 4197120 D 232721 CDS YP_988126.1 121596230 4672921 4197655..4199502 1 NC_008782.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 4199502 4672921 Ajs_3944 Acidovorax sp. JS42 aldehyde ferredoxin oxidoreductase YP_988126.1 4197655 D 232721 CDS YP_988127.1 121596231 4672878 4199626..4200918 1 NC_008782.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4200918 4672878 Ajs_3945 Acidovorax sp. JS42 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_988127.1 4199626 D 232721 CDS YP_988128.1 121596232 4672597 4201008..4201262 1 NC_008782.1 PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS; hypothetical protein 4201262 4672597 Ajs_3946 Acidovorax sp. JS42 hypothetical protein YP_988128.1 4201008 D 232721 CDS YP_988129.1 121596233 4674375 4201325..4201591 1 NC_008782.1 KEGG: rfr:Rfer_2847 hypothetical protein; hypothetical protein 4201591 4674375 Ajs_3947 Acidovorax sp. JS42 hypothetical protein YP_988129.1 4201325 D 232721 CDS YP_988130.1 121596234 4672502 4201823..4202809 1 NC_008782.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 4202809 4672502 Ajs_3948 Acidovorax sp. JS42 magnesium and cobalt transport protein CorA YP_988130.1 4201823 D 232721 CDS YP_988131.1 121596235 4672527 complement(4203022..4203777) 1 NC_008782.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 4203777 4672527 Ajs_3949 Acidovorax sp. JS42 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_988131.1 4203022 R 232721 CDS YP_988132.1 121596236 4672423 complement(4203863..4205542) 1 NC_008782.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 4205542 4672423 Ajs_3950 Acidovorax sp. JS42 AMP-dependent synthetase and ligase YP_988132.1 4203863 R 232721 CDS YP_988133.1 121596237 4672036 complement(4205672..4207096) 1 NC_008782.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta 4207096 4672036 Ajs_3951 Acidovorax sp. JS42 NAD(P) transhydrogenase subunit beta YP_988133.1 4205672 R 232721 CDS YP_988134.1 121596238 4672245 complement(4207108..4207437) 1 NC_008782.1 KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 4207437 4672245 Ajs_3952 Acidovorax sp. JS42 NAD(P) transhydrogenase subunit alpha part 2 YP_988134.1 4207108 R 232721 CDS YP_988135.1 121596239 4672191 complement(4207486..4208196) 1 NC_008782.1 hypothetical protein 4208196 4672191 Ajs_3953 Acidovorax sp. JS42 hypothetical protein YP_988135.1 4207486 R 232721 CDS YP_988136.1 121596240 4671916 complement(4208230..4209345) 1 NC_008782.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase 4209345 4671916 Ajs_3954 Acidovorax sp. JS42 NAD(P)(+) transhydrogenase YP_988136.1 4208230 R 232721 CDS YP_988137.1 121596241 4672076 complement(4209557..4210621) 1 NC_008782.1 KEGG: rso:RSc0573 probable fructose-bisphosphate aldolase protein; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase 4210621 4672076 Ajs_3955 Acidovorax sp. JS42 fructose-bisphosphate aldolase YP_988137.1 4209557 R 232721 CDS YP_988138.1 121596242 4672052 complement(4210775..4212211) 1 NC_008782.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 4212211 4672052 Ajs_3956 Acidovorax sp. JS42 pyruvate kinase YP_988138.1 4210775 R 232721 CDS YP_988139.1 121596243 4674254 complement(4212295..4214460) 1 NC_008782.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rfr:Rfer_0086 peptidase M24; aminopeptidase P 4214460 4674254 Ajs_3957 Acidovorax sp. JS42 aminopeptidase P YP_988139.1 4212295 R 232721 CDS YP_988140.1 121596244 4671914 complement(4214616..4215431) 1 NC_008782.1 PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase; nucleotidyl transferase 4215431 4671914 Ajs_3958 Acidovorax sp. JS42 nucleotidyl transferase YP_988140.1 4214616 R 232721 CDS YP_988141.1 121596245 4671881 4215595..4217631 1 NC_008782.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase; transketolase 4217631 4671881 Ajs_3959 Acidovorax sp. JS42 transketolase YP_988141.1 4215595 D 232721 CDS YP_988142.1 121596246 4671887 4217685..4218686 1 NC_008782.1 KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 4218686 4671887 Ajs_3960 Acidovorax sp. JS42 glyceraldehyde-3-phosphate dehydrogenase YP_988142.1 4217685 D 232721 CDS YP_988143.1 121596247 4671819 4218831..4219391 1 NC_008782.1 PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein 4219391 4671819 Ajs_3961 Acidovorax sp. JS42 hypothetical protein YP_988143.1 4218831 D 232721 CDS YP_988144.1 121596248 4671805 complement(4219489..4219833) 1 NC_008782.1 KEGG: rfr:Rfer_2154 ribosomal subunit interface protein, putative; ribosomal subunit Interface protein 4219833 4671805 Ajs_3962 Acidovorax sp. JS42 ribosomal subunit Interface protein YP_988144.1 4219489 R 232721 CDS YP_988145.1 121596249 4671793 4220005..4220922 1 NC_008782.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26; peptidase C26 4220922 4671793 Ajs_3963 Acidovorax sp. JS42 peptidase C26 YP_988145.1 4220005 D 232721 CDS YP_988146.1 121596250 4671764 complement(4220980..4221453) 1 NC_008782.1 KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4221453 4671764 Ajs_3964 Acidovorax sp. JS42 FKBP-type peptidylprolyl isomerase YP_988146.1 4220980 R 232721 CDS YP_988147.1 121596251 4671712 complement(4221565..4222608) 1 NC_008782.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like; pirin domain-containing protein 4222608 4671712 Ajs_3965 Acidovorax sp. JS42 pirin domain-containing protein YP_988147.1 4221565 R 232721 CDS YP_988148.1 121596252 4671623 complement(4222872..4223300) 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_4772 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 4223300 4671623 Ajs_3966 Acidovorax sp. JS42 3-demethylubiquinone-9 3-methyltransferase YP_988148.1 4222872 R 232721 CDS YP_988149.1 121596253 4671580 complement(4223343..4223762) 1 NC_008782.1 hypothetical protein 4223762 4671580 Ajs_3967 Acidovorax sp. JS42 hypothetical protein YP_988149.1 4223343 R 232721 CDS YP_988150.1 121596254 4674218 complement(4223942..4224946) 1 NC_008782.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein; short-chain dehydrogenase/reductase SDR 4224946 4674218 Ajs_3968 Acidovorax sp. JS42 short-chain dehydrogenase/reductase SDR YP_988150.1 4223942 R 232721 CDS YP_988151.1 121596255 4671203 complement(4225118..4225678) 1 NC_008782.1 KEGG: rfr:Rfer_4031 hypothetical protein; hypothetical protein 4225678 4671203 Ajs_3969 Acidovorax sp. JS42 hypothetical protein YP_988151.1 4225118 R 232721 CDS YP_988152.1 121596256 4671285 complement(4225743..4226504) 1 NC_008782.1 PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein; DTW domain-containing protein 4226504 4671285 Ajs_3970 Acidovorax sp. JS42 DTW domain-containing protein YP_988152.1 4225743 R 232721 CDS YP_988153.1 121596257 4671234 4226688..4227593 1 NC_008782.1 PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B3889 regulatory protein, IclR; IclR family transcriptional regulator 4227593 4671234 Ajs_3971 Acidovorax sp. JS42 IclR family transcriptional regulator YP_988153.1 4226688 D 232721 CDS YP_988154.1 121596258 4671180 4227590..4228741 1 NC_008782.1 KEGG: reu:Reut_B3886 thiolase; thiolase 4228741 4671180 Ajs_3972 Acidovorax sp. JS42 thiolase YP_988154.1 4227590 D 232721 CDS YP_988155.1 121596259 4671099 4228747..4229124 1 NC_008782.1 PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3885 protein of unknown function DUF35; hypothetical protein 4229124 4671099 Ajs_3973 Acidovorax sp. JS42 hypothetical protein YP_988155.1 4228747 D 232721 CDS YP_988156.1 121596260 4671078 4229306..4230292 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 4230292 4671078 Ajs_3974 Acidovorax sp. JS42 hypothetical protein YP_988156.1 4229306 D 232721 CDS YP_988157.1 121596261 4670897 4230496..4232583 1 NC_008782.1 PFAM: CoA-binding domain protein; KEGG: reu:Reut_B3883 CoA-binding; CoA-binding domain-containing protein 4232583 4670897 Ajs_3975 Acidovorax sp. JS42 CoA-binding domain-containing protein YP_988157.1 4230496 D 232721 CDS YP_988158.1 121596262 4670766 complement(4232803..4233501) 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pol:Bpro_1375 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4233501 4670766 Ajs_3976 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_988158.1 4232803 R 232721 CDS YP_988159.1 121596263 4670714 complement(4233516..4234277) 1 NC_008782.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 4234277 fabG 4670714 fabG Acidovorax sp. JS42 3-ketoacyl-(acyl-carrier-protein) reductase YP_988159.1 4233516 R 232721 CDS YP_988160.1 121596264 4670669 complement(4234296..4234688) 1 NC_008782.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0888 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4234688 4670669 Ajs_3978 Acidovorax sp. JS42 glyoxalase/bleomycin resistance protein/dioxygenase YP_988160.1 4234296 R 232721 CDS YP_988161.1 121596265 4670597 complement(4235570..4236160) 1 NC_008782.1 hypothetical protein 4236160 4670597 Ajs_3979 Acidovorax sp. JS42 hypothetical protein YP_988161.1 4235570 R 232721 CDS YP_988162.1 121596266 4671330 complement(4236243..4237565) 1 NC_008782.1 KEGG: pen:PSEEN0757 hypothetical protein; hypothetical protein 4237565 4671330 Ajs_3980 Acidovorax sp. JS42 hypothetical protein YP_988162.1 4236243 R 232721 CDS YP_988163.1 121596267 4670660 complement(4237635..4238033) 1 NC_008782.1 hypothetical protein 4238033 4670660 Ajs_3981 Acidovorax sp. JS42 hypothetical protein YP_988163.1 4237635 R 232721 CDS YP_988164.1 121596268 4670683 complement(4238040..4238285) 1 NC_008782.1 PFAM: protein of unknown function DUF1010; hypothetical protein 4238285 4670683 Ajs_3982 Acidovorax sp. JS42 hypothetical protein YP_988164.1 4238040 R 232721 CDS YP_988165.1 121596269 4670520 complement(4238411..4238923) 1 NC_008782.1 KEGG: rso:RSc3250 probable signal peptide protein; putative signal peptide protein 4238923 4670520 Ajs_3983 Acidovorax sp. JS42 putative signal peptide protein YP_988165.1 4238411 R 232721 CDS YP_988166.1 121596270 4670887 complement(4239000..4239329) 1 NC_008782.1 KEGG: rpa:RPA2254 hypothetical protein; hypothetical protein 4239329 4670887 Ajs_3984 Acidovorax sp. JS42 hypothetical protein YP_988166.1 4239000 R 232721 CDS YP_988167.1 121596271 4670968 complement(4240104..4240643) 1 NC_008782.1 PFAM: protein of unknown function DUF88; KEGG: cvi:CV0746 hypothetical protein; hypothetical protein 4240643 4670968 Ajs_3985 Acidovorax sp. JS42 hypothetical protein YP_988167.1 4240104 R 232721 CDS YP_988168.1 121596272 4671066 complement(4241756..4241929) 1 NC_008782.1 KEGG: rfr:Rfer_4005 hypothetical protein; hypothetical protein 4241929 4671066 Ajs_3988 Acidovorax sp. JS42 hypothetical protein YP_988168.1 4241756 R 232721 CDS YP_988169.1 121596273 4671072 complement(4242197..4242547) 1 NC_008782.1 hypothetical protein 4242547 4671072 Ajs_3989 Acidovorax sp. JS42 hypothetical protein YP_988169.1 4242197 R 232721 CDS YP_988170.1 121596274 4671076 complement(4242552..4245497) 1 NC_008782.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 4245497 4671076 Ajs_3990 Acidovorax sp. JS42 DNA topoisomerase III YP_988170.1 4242552 R 232721 CDS YP_988171.1 121596275 4671082 4245608..4246249 1 NC_008782.1 PFAM: nuclear protein SET; KEGG: rfr:Rfer_3954 nuclear protein SET; nuclear protein SET 4246249 4671082 Ajs_3991 Acidovorax sp. JS42 nuclear protein SET YP_988171.1 4245608 D 232721 CDS YP_988172.1 121596276 4671087 4246246..4247103 1 NC_008782.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 4247103 4671087 Ajs_3992 Acidovorax sp. JS42 biotin--acetyl-CoA-carboxylase ligase YP_988172.1 4246246 D 232721 CDS YP_988173.1 121596277 4671102 4247162..4247893 1 NC_008782.1 PFAM: Sporulation domain protein; KEGG: rfr:Rfer_3952 hypothetical protein; sporulation domain-containing protein 4247893 4671102 Ajs_3993 Acidovorax sp. JS42 sporulation domain-containing protein YP_988173.1 4247162 D 232721 CDS YP_988174.1 121596278 4671108 complement(4248015..4248983) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1948 hypothetical protein; hypothetical protein 4248983 4671108 Ajs_3994 Acidovorax sp. JS42 hypothetical protein YP_988174.1 4248015 R 232721 CDS YP_988175.1 121596279 4671109 complement(4249285..4250223) 1 NC_008782.1 PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 4250223 4671109 Ajs_3995 Acidovorax sp. JS42 N-formylglutamate amidohydrolase YP_988175.1 4249285 R 232721 CDS YP_988176.1 121596280 4671116 complement(4250242..4251207) 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0521 uncharacterized protein UPF0065; hypothetical protein 4251207 4671116 Ajs_3996 Acidovorax sp. JS42 hypothetical protein YP_988176.1 4250242 R 232721 CDS YP_988177.1 121596281 4671135 4251318..4252244 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_0983 transcriptional regulator, LysR family; LysR family transcriptional regulator 4252244 4671135 Ajs_3997 Acidovorax sp. JS42 LysR family transcriptional regulator YP_988177.1 4251318 D 232721 CDS YP_988178.1 121596282 4671136 complement(4252325..4253806) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_3951 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4253806 4671136 Ajs_3998 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_988178.1 4252325 R 232721 CDS YP_988179.1 121596283 4671139 complement(4253850..4254524) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4254524 4671139 Ajs_3999 Acidovorax sp. JS42 two component transcriptional regulator YP_988179.1 4253850 R 232721 CDS YP_988180.1 121596284 4671162 complement(4254574..4255140) 1 NC_008782.1 PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family; MarR family transcriptional regulator 4255140 4671162 Ajs_4000 Acidovorax sp. JS42 MarR family transcriptional regulator YP_988180.1 4254574 R 232721 CDS YP_988181.1 121596285 4671231 4255218..4256339 1 NC_008782.1 KEGG: rfr:Rfer_3948 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recombination protein RecA 4256339 4671231 Ajs_4001 Acidovorax sp. JS42 recombination protein RecA YP_988181.1 4255218 D 232721 CDS YP_988182.1 121596286 4671300 4256421..4256876 1 NC_008782.1 KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX 4256876 4671300 Ajs_4002 Acidovorax sp. JS42 regulatory protein RecX YP_988182.1 4256421 D 232721 CDS YP_988183.1 121596287 4671345 complement(4257110..4259464) 1 NC_008782.1 KEGG: rfr:Rfer_3864 hypothetical protein; hypothetical protein 4259464 4671345 Ajs_4003 Acidovorax sp. JS42 hypothetical protein YP_988183.1 4257110 R 232721 CDS YP_988184.1 121596288 4671620 complement(4259548..4260501) 1 NC_008782.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 4260501 secF 4671620 secF Acidovorax sp. JS42 preprotein translocase subunit SecF YP_988184.1 4259548 R 232721 CDS YP_988185.1 121596289 4671625 complement(4260516..4262414) 1 NC_008782.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 4262414 secD 4671625 secD Acidovorax sp. JS42 preprotein translocase subunit SecD YP_988185.1 4260516 R 232721 CDS YP_988186.1 121596290 4671636 complement(4262509..4262838) 1 NC_008782.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit; protein translocase subunit yajC 4262838 4671636 Ajs_4006 Acidovorax sp. JS42 protein translocase subunit yajC YP_988186.1 4262509 R 232721 CDS YP_988187.1 121596291 4671665 4263233..4264363 1 NC_008782.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ppu:PP_3360 hypothetical protein; mechanosensitive ion channel protein MscS 4264363 4671665 Ajs_4007 Acidovorax sp. JS42 mechanosensitive ion channel protein MscS YP_988187.1 4263233 D 232721 CDS YP_988188.1 121596292 4671683 complement(4264464..4268084) 1 NC_008782.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 4268084 4671683 Ajs_4008 Acidovorax sp. JS42 indolepyruvate ferredoxin oxidoreductase YP_988188.1 4264464 R 232721 CDS YP_988189.1 121596293 4671705 4268261..4268767 1 NC_008782.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4268767 4671705 Ajs_4009 Acidovorax sp. JS42 AsnC family transcriptional regulator YP_988189.1 4268261 D 232721 CDS YP_988190.1 121596294 4671755 4269069..4269926 1 NC_008782.1 KEGG: bja:blr4317 hypothetical protein; hypothetical protein 4269926 4671755 Ajs_4010 Acidovorax sp. JS42 hypothetical protein YP_988190.1 4269069 D 232721 CDS YP_988191.1 121596295 4671794 4269923..4271095 1 NC_008782.1 KEGG: hch:HCH_04199 hypothetical protein; hypothetical protein 4271095 4671794 Ajs_4011 Acidovorax sp. JS42 hypothetical protein YP_988191.1 4269923 D 232721 CDS YP_988192.1 121596296 4671795 4271170..4272879 1 NC_008782.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE; hypothetical protein 4272879 4671795 Ajs_4012 Acidovorax sp. JS42 hypothetical protein YP_988192.1 4271170 D 232721 CDS YP_988193.1 121596297 4671831 complement(4272988..4274196) 1 NC_008782.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rfr:Rfer_0365 MltA; MltA domain-containing protein 4274196 4671831 Ajs_4013 Acidovorax sp. JS42 MltA domain-containing protein YP_988193.1 4272988 R 232721 CDS YP_988194.1 121596298 4671856 4274466..4275116 1 NC_008782.1 PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_0206 OmpA/MotB; OmpA/MotB domain-containing protein 4275116 4671856 Ajs_4014 Acidovorax sp. JS42 OmpA/MotB domain-containing protein YP_988194.1 4274466 D 232721 CDS YP_988195.1 121596299 4671924 complement(4275207..4275857) 1 NC_008782.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family; response regulator receiver protein 4275857 4671924 Ajs_4015 Acidovorax sp. JS42 response regulator receiver protein YP_988195.1 4275207 R 232721 CDS YP_988196.1 121596300 4672564 complement(4275857..4278007) 1 NC_008782.1 KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4278007 4672564 Ajs_4016 Acidovorax sp. JS42 PAS/PAC sensor signal transduction histidine kinase YP_988196.1 4275857 R 232721 CDS YP_988197.1 121596301 4672530 complement(4278007..4278822) 1 NC_008782.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rfr:Rfer_0849 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4278822 4672530 Ajs_4017 Acidovorax sp. JS42 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_988197.1 4278007 R 232721 CDS YP_988198.1 121596302 4672064 complement(4278819..4283075) 1 NC_008782.1 KEGG: rfr:Rfer_0366 hypothetical protein; hypothetical protein 4283075 4672064 Ajs_4018 Acidovorax sp. JS42 hypothetical protein YP_988198.1 4278819 R 232721 CDS YP_988199.1 121596303 4672066 4283198..4285936 1 NC_008782.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rfr:Rfer_0367 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4285936 4672066 Ajs_4019 Acidovorax sp. JS42 (glutamate--ammonia-ligase) adenylyltransferase YP_988199.1 4283198 D 232721 CDS YP_988200.1 121596304 4671889 4286085..4286861 1 NC_008782.1 PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family; TetR family transcriptional regulator 4286861 4671889 Ajs_4020 Acidovorax sp. JS42 TetR family transcriptional regulator YP_988200.1 4286085 D 232721 CDS YP_988201.1 121596305 4671907 4286858..4288309 1 NC_008782.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 4288309 4671907 Ajs_4021 Acidovorax sp. JS42 RND efflux system outer membrane lipoprotein YP_988201.1 4286858 D 232721 CDS YP_988202.1 121596306 4672094 4288326..4289498 1 NC_008782.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; RND family efflux transporter MFP subunit 4289498 4672094 Ajs_4022 Acidovorax sp. JS42 RND family efflux transporter MFP subunit YP_988202.1 4288326 D 232721 CDS YP_988203.1 121596307 4671870 4289508..4292603 1 NC_008782.1 PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; acriflavin resistance protein 4292603 4671870 Ajs_4023 Acidovorax sp. JS42 acriflavin resistance protein YP_988203.1 4289508 D 232721 CDS YP_988204.1 121596308 4672179 4292764..4293405 1 NC_008782.1 PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; glutathione peroxidase 4293405 4672179 Ajs_4024 Acidovorax sp. JS42 glutathione peroxidase YP_988204.1 4292764 D 232721 CDS YP_988205.1 121596309 4672183 complement(4293700..4294314) 1 NC_008782.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_4050 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 4294314 4672183 Ajs_4025 Acidovorax sp. JS42 glutathione S-transferase domain-containing protein YP_988205.1 4293700 R 232721 CDS YP_988206.1 121596310 4672197 4294433..4295812 1 NC_008782.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4295812 4672197 Ajs_4026 Acidovorax sp. JS42 adenylosuccinate lyase YP_988206.1 4294433 D 232721 CDS YP_988207.1 121596311 4672003 4295889..4296449 1 NC_008782.1 PFAM: YaeQ family protein; KEGG: rfr:Rfer_4048 YaeQ; YaeQ family protein 4296449 4672003 Ajs_4027 Acidovorax sp. JS42 YaeQ family protein YP_988207.1 4295889 D 232721 CDS YP_988208.1 121596312 4672335 complement(4296523..4296828) 1 NC_008782.1 KEGG: pol:Bpro_4663 hypothetical protein; hypothetical protein 4296828 4672335 Ajs_4028 Acidovorax sp. JS42 hypothetical protein YP_988208.1 4296523 R 232721 CDS YP_988209.1 121596313 4672027 complement(4296869..4297312) 1 NC_008782.1 PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289; hypothetical protein 4297312 4672027 Ajs_4029 Acidovorax sp. JS42 hypothetical protein YP_988209.1 4296869 R 232721 CDS YP_988210.1 121596314 4672388 4297834..4298565 1 NC_008782.1 PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC; integral membrane protein TerC 4298565 4672388 Ajs_4030 Acidovorax sp. JS42 integral membrane protein TerC YP_988210.1 4297834 D 232721 CDS YP_988211.1 121596315 4672389 4298614..4299087 1 NC_008782.1 KEGG: pol:Bpro_4667 hypothetical protein; hypothetical protein 4299087 4672389 Ajs_4031 Acidovorax sp. JS42 hypothetical protein YP_988211.1 4298614 D 232721 CDS YP_988212.1 121596316 4672415 4299152..4299586 1 NC_008782.1 PFAM: membrane protein of unknown function; KEGG: rfr:Rfer_4042 membrane protein of unknown function; hypothetical protein 4299586 4672415 Ajs_4032 Acidovorax sp. JS42 hypothetical protein YP_988212.1 4299152 D 232721 CDS YP_988213.1 121596317 4672417 complement(4299554..4301119) 1 NC_008782.1 PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_4041 peptidase M48, Ste24p; peptidase M48, Ste24p 4301119 4672417 Ajs_4033 Acidovorax sp. JS42 peptidase M48, Ste24p YP_988213.1 4299554 R 232721 CDS YP_988214.1 121596318 4672458 4301231..4301716 1 NC_008782.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C; GTP cyclohydrolase subunit MoaC 4301716 4672458 Ajs_4034 Acidovorax sp. JS42 GTP cyclohydrolase subunit MoaC YP_988214.1 4301231 D 232721 CDS YP_988215.1 121596319 4672516 complement(4301878..4302189) 1 NC_008782.1 PFAM: DNA polymerase, beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein; DNA polymerase subunit beta 4302189 4672516 Ajs_4035 Acidovorax sp. JS42 DNA polymerase subunit beta YP_988215.1 4301878 R 232721 CDS YP_988216.1 121596320 4673130 complement(4302186..4302635) 1 NC_008782.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: xom:XOO_3261 nucleotidyltransferase; HI0074 family nucleotidyltransferase substrate-binding protein 4302635 4673130 Ajs_4036 Acidovorax sp. JS42 HI0074 family nucleotidyltransferase substrate-binding protein YP_988216.1 4302186 R 232721 CDS YP_988217.1 121596321 4673095 complement(4302839..4303180) 1 NC_008782.1 KEGG: rfr:Rfer_4041 peptidase M48, Ste24p; hypothetical protein 4303180 4673095 Ajs_4037 Acidovorax sp. JS42 hypothetical protein YP_988217.1 4302839 R 232721 CDS YP_988218.1 121596322 4672759 4303292..4303792 1 NC_008782.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 4303792 4672759 Ajs_4038 Acidovorax sp. JS42 molybdenum cofactor biosynthesis protein C YP_988218.1 4303292 D 232721 CDS YP_988219.1 121596323 4672760 complement(4304003..4304761) 1 NC_008782.1 KEGG: pol:Bpro_4670 FimB; FimB 4304761 4672760 Ajs_4039 Acidovorax sp. JS42 FimB YP_988219.1 4304003 R 232721 CDS YP_988220.1 121596324 4672798 complement(4304973..4305509) 1 NC_008782.1 PFAM: Fimbrial protein pilin; KEGG: rfr:Rfer_1265 methylation; fimbrial protein pilin 4305509 4672798 Ajs_4040 Acidovorax sp. JS42 fimbrial protein pilin YP_988220.1 4304973 R 232721 CDS YP_988221.1 121596325 4672532 4306085..4307311 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 4307311 4672532 Ajs_4041 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_988221.1 4306085 D 232721 CDS YP_988222.1 121596326 4672500 4307709..4308935 1 NC_008782.1 PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 4308935 4672500 Ajs_4042 Acidovorax sp. JS42 transposase IS116/IS110/IS902 family protein YP_988222.1 4307709 D 232721 CDS YP_988223.1 121596327 4672843 complement(4309077..4309712) 1 NC_008782.1 PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein; FHA domain-containing protein 4309712 4672843 Ajs_4043 Acidovorax sp. JS42 FHA domain-containing protein YP_988223.1 4309077 R 232721 CDS YP_988224.1 121596328 4672863 complement(4309817..4310632) 1 NC_008782.1 PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: rfr:Rfer_3941 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein 4310632 4672863 Ajs_4044 Acidovorax sp. JS42 protein phosphatase 2C domain-containing protein YP_988224.1 4309817 R 232721 CDS YP_988225.1 121596329 4672866 complement(4310915..4311598) 1 NC_008782.1 PFAM: Integral membrane protein TerC; KEGG: bbr:BB2083 integral membrane protein; integral membrane protein TerC 4311598 4672866 Ajs_4045 Acidovorax sp. JS42 integral membrane protein TerC YP_988225.1 4310915 R 232721 CDS YP_988226.1 121596330 4672917 complement(4311754..4312647) 1 NC_008782.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 4312647 4672917 Ajs_4046 Acidovorax sp. JS42 succinyl-CoA synthetase subunit alpha YP_988226.1 4311754 R 232721 CDS YP_988227.1 121596331 4672933 complement(4312667..4313827) 1 NC_008782.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 4313827 sucC 4672933 sucC Acidovorax sp. JS42 succinyl-CoA synthetase subunit beta YP_988227.1 4312667 R 232721 CDS YP_988228.1 121596332 4672736 4314004..4314936 1 NC_008782.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4314936 4672736 Ajs_4048 Acidovorax sp. JS42 N-acetyl-gamma-glutamyl-phosphate reductase YP_988228.1 4314004 D 232721 CDS YP_988229.1 121596333 4673054 complement(4315147..4316307) 1 NC_008782.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rfr:Rfer_3862 DNA processing protein DprA, putative; Fis family transcriptional regulator 4316307 4673054 Ajs_4049 Acidovorax sp. JS42 Fis family transcriptional regulator YP_988229.1 4315147 R 232721 CDS YP_988230.1 121596334 4673078 complement(4316360..4317640) 1 NC_008782.1 PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM; peptidoglycan-binding LysM 4317640 4673078 Ajs_4050 Acidovorax sp. JS42 peptidoglycan-binding LysM YP_988230.1 4316360 R 232721 CDS YP_988231.1 121596335 4673118 4317822..4318334 1 NC_008782.1 KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4318334 4673118 Ajs_4051 Acidovorax sp. JS42 peptide deformylase YP_988231.1 4317822 D 232721 CDS YP_988232.1 121596336 4674708 4318331..4318846 1 NC_008782.1 KEGG: pol:Bpro_0388 putative lipoprotein transmembrane; putative lipoprotein transmembrane 4318846 4674708 Ajs_4052 Acidovorax sp. JS42 putative lipoprotein transmembrane YP_988232.1 4318331 D 232721 CDS YP_988233.1 121596337 4673343 4318880..4319851 1 NC_008782.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4319851 4673343 Ajs_4053 Acidovorax sp. JS42 methionyl-tRNA formyltransferase YP_988233.1 4318880 D 232721 CDS YP_988234.1 121596338 4673348 4319848..4320597 1 NC_008782.1 PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like; AzlC family protein 4320597 4673348 Ajs_4054 Acidovorax sp. JS42 AzlC family protein YP_988234.1 4319848 D 232721 CDS YP_988235.1 121596339 4673433 4320594..4320929 1 NC_008782.1 PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport; branched-chain amino acid transport 4320929 4673433 Ajs_4055 Acidovorax sp. JS42 branched-chain amino acid transport YP_988235.1 4320594 D 232721 CDS YP_988236.1 121596340 4673443 4321019..4322212 1 NC_008782.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 4322212 pgk 4673443 pgk Acidovorax sp. JS42 phosphoglycerate kinase YP_988236.1 4321019 D 232721 CDS YP_988237.1 121596341 4673478 complement(4322280..4323179) 1 NC_008782.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4618 protein of unknown function DUF6, transmembrane; hypothetical protein 4323179 4673478 Ajs_4057 Acidovorax sp. JS42 hypothetical protein YP_988237.1 4322280 R 232721 CDS YP_988238.1 121596342 4673518 4323191..4324111 1 NC_008782.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4324111 pyrF 4673518 pyrF Acidovorax sp. JS42 orotidine 5'-phosphate decarboxylase YP_988238.1 4323191 D 232721 CDS YP_988239.1 121596343 4673602 4324142..4324414 1 NC_008782.1 KEGG: bbr:BB4564 putative LysR-family transcriptional regulator; LysR family transcriptional regulator 4324414 4673602 Ajs_4059 Acidovorax sp. JS42 LysR family transcriptional regulator YP_988239.1 4324142 D 232721 CDS YP_988240.1 121596344 4673699 4324524..4325528 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4092 hypothetical protein; hypothetical protein 4325528 4673699 Ajs_4060 Acidovorax sp. JS42 hypothetical protein YP_988240.1 4324524 D 232721 CDS YP_988241.1 121596345 4673718 4325525..4326499 1 NC_008782.1 KEGG: bbr:BB4562 hypothetical protein; hypothetical protein 4326499 4673718 Ajs_4061 Acidovorax sp. JS42 hypothetical protein YP_988241.1 4325525 D 232721 CDS YP_988242.1 121596346 4673745 4327080..4329041 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4329041 4673745 Ajs_4062 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_988242.1 4327080 D 232721 CDS YP_988243.1 121596347 4673769 complement(4329103..4330596) 1 NC_008782.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pae:PA0783 sodium/proline symporter PutP; sodium/proline symporter 4330596 4673769 Ajs_4063 Acidovorax sp. JS42 sodium/proline symporter YP_988243.1 4329103 R 232721 CDS YP_988244.1 121596348 4673778 complement(4330831..4333920) 1 NC_008782.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit; excinuclease ABC subunit A 4333920 4673778 Ajs_4064 Acidovorax sp. JS42 excinuclease ABC subunit A YP_988244.1 4330831 R 232721 CDS YP_988245.1 121596349 4673780 4334211..4335392 1 NC_008782.1 PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4335392 4673780 Ajs_4065 Acidovorax sp. JS42 major facilitator superfamily transporter YP_988245.1 4334211 D 232721 CDS YP_988246.1 121596350 4673795 4335527..4336072 1 NC_008782.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; single-strand-binding protein 4336072 4673795 Ajs_4066 Acidovorax sp. JS42 single-strand-binding protein YP_988246.1 4335527 D 232721 CDS YP_988247.1 121596351 4673797 complement(4336180..4337841) 1 NC_008782.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease; L-lactate transport 4337841 4673797 Ajs_4067 Acidovorax sp. JS42 L-lactate transport YP_988247.1 4336180 R 232721 CDS YP_988248.1 121596352 4673811 complement(4338080..4339219) 1 NC_008782.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 4339219 mnmA 4673811 mnmA Acidovorax sp. JS42 tRNA-specific 2-thiouridylase MnmA YP_988248.1 4338080 R 232721 CDS YP_988249.1 121596353 4673814 4339368..4340342 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4206 transcriptional regulator, LysR family; LysR family transcriptional regulator 4340342 4673814 Ajs_4069 Acidovorax sp. JS42 LysR family transcriptional regulator YP_988249.1 4339368 D 232721 CDS YP_988250.1 121596354 4673816 4340502..4341941 1 NC_008782.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 4341941 4673816 Ajs_4070 Acidovorax sp. JS42 tricarballylate dehydrogenase YP_988250.1 4340502 D 232721 CDS YP_988251.1 121596355 4673820 4341947..4343173 1 NC_008782.1 TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B; CitB domain-containing protein 4343173 4673820 Ajs_4071 Acidovorax sp. JS42 CitB domain-containing protein YP_988251.1 4341947 D 232721 CDS YP_988252.1 121596356 4673840 complement(4343510..4344589) 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 4344589 4673840 Ajs_4072 Acidovorax sp. JS42 integrase catalytic subunit YP_988252.1 4343510 R 232721 CDS YP_988253.1 121596357 4673843 4344708..4345685 1 NC_008782.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein; hypothetical protein 4345685 4673843 Ajs_4073 Acidovorax sp. JS42 hypothetical protein YP_988253.1 4344708 D 232721 CDS YP_988254.1 121596358 4673862 complement(4345827..4346312) 1 NC_008782.1 PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase; NUDIX hydrolase 4346312 4673862 Ajs_4074 Acidovorax sp. JS42 NUDIX hydrolase YP_988254.1 4345827 R 232721 CDS YP_988255.1 121596359 4673889 4346823..4349000 1 NC_008782.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpm:BURPS1710b_A0821 TonB-dependent copper receptor; TonB-dependent copper receptor 4349000 4673889 Ajs_4075 Acidovorax sp. JS42 TonB-dependent copper receptor YP_988255.1 4346823 D 232721 CDS YP_988256.1 121596360 4673958 complement(4349107..4349607) 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB4270 putative acetyltransferase; GCN5-like N-acetyltransferase 4349607 4673958 Ajs_4076 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_988256.1 4349107 R 232721 CDS YP_988257.1 121596361 4673956 complement(4349604..4350320) 1 NC_008782.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 4350320 4673956 Ajs_4077 Acidovorax sp. JS42 riboflavin synthase subunit alpha YP_988257.1 4349604 R 232721 CDS YP_988258.1 121596362 4673997 complement(4350451..4353267) 1 NC_008782.1 KEGG: mca:MCA0551 hypothetical protein; hypothetical protein 4353267 4673997 Ajs_4078 Acidovorax sp. JS42 hypothetical protein YP_988258.1 4350451 R 232721 CDS YP_988259.1 121596363 4674142 complement(4353274..4353876) 1 NC_008782.1 KEGG: mhu:Mhun_1889 hypothetical protein; hypothetical protein 4353876 4674142 Ajs_4079 Acidovorax sp. JS42 hypothetical protein YP_988259.1 4353274 R 232721 CDS YP_988260.1 121596364 4674127 complement(4353879..4355072) 1 NC_008782.1 KEGG: gvi:glr1927 unknown protein; hypothetical protein 4355072 4674127 Ajs_4080 Acidovorax sp. JS42 hypothetical protein YP_988260.1 4353879 R 232721 CDS YP_988261.1 121596365 4674121 complement(4355050..4358361) 1 NC_008782.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT1729 DNA methylase, putative; DNA methylase N-4/N-6 domain-containing protein 4358361 4674121 Ajs_4081 Acidovorax sp. JS42 DNA methylase N-4/N-6 domain-containing protein YP_988261.1 4355050 R 232721 CDS YP_988262.1 121596366 4674089 complement(4358718..4360085) 1 NC_008782.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eba:ebA7143 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4360085 4674089 Ajs_4082 Acidovorax sp. JS42 integral membrane sensor signal transduction histidine kinase YP_988262.1 4358718 R 232721 CDS YP_988263.1 121596367 4674039 complement(4360082..4360753) 1 NC_008782.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA7146 two component response regulator; two component transcriptional regulator 4360753 4674039 Ajs_4083 Acidovorax sp. JS42 two component transcriptional regulator YP_988263.1 4360082 R 232721 CDS YP_988264.1 121596368 4670575 complement(4360753..4361082) 1 NC_008782.1 KEGG: mag:amb0190 predicted membrane protein; membrane protein 4361082 4670575 Ajs_4084 Acidovorax sp. JS42 membrane protein YP_988264.1 4360753 R 232721 CDS YP_988265.1 121596369 4674677 4361230..4362699 1 NC_008782.1 PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: eba:ebA7152 putative flavocytochrome subuit of an oxidoreductase; ferric reductase domain-containing protein 4362699 4674677 Ajs_4085 Acidovorax sp. JS42 ferric reductase domain-containing protein YP_988265.1 4361230 D 232721 CDS YP_988266.1 121596370 4674605 4362713..4363048 1 NC_008782.1 KEGG: reu:Reut_B5167 hypothetical protein; hypothetical protein 4363048 4674605 Ajs_4086 Acidovorax sp. JS42 hypothetical protein YP_988266.1 4362713 D 232721 CDS YP_988267.1 121596371 4674592 4363088..4363570 1 NC_008782.1 KEGG: bmb:BruAb2_0227 hypothetical protein; hypothetical protein 4363570 4674592 Ajs_4087 Acidovorax sp. JS42 hypothetical protein YP_988267.1 4363088 D 232721 CDS YP_988268.1 121596372 4674594 4363585..4365762 1 NC_008782.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: bms:BRA0233 oxidoreductase, FAD-binding, putative; FAD/NAD(P)-binding oxidoreductase subunit 4365762 4674594 Ajs_4088 Acidovorax sp. JS42 FAD/NAD(P)-binding oxidoreductase subunit YP_988268.1 4363585 D 232721 CDS YP_988269.1 121596373 4674431 4365743..4366726 1 NC_008782.1 PFAM: ApbE family lipoprotein; KEGG: bmb:BruAb2_0229 ApbE family protein; ApbE family lipoprotein 4366726 4674431 Ajs_4089 Acidovorax sp. JS42 ApbE family lipoprotein YP_988269.1 4365743 D 232721 CDS YP_988270.1 121596374 4674356 4366829..4367146 1 NC_008782.1 hypothetical protein 4367146 4674356 Ajs_4090 Acidovorax sp. JS42 hypothetical protein YP_988270.1 4366829 D 232721 CDS YP_988271.1 121596375 4674327 complement(4367183..4367650) 1 NC_008782.1 hypothetical protein 4367650 4674327 Ajs_4091 Acidovorax sp. JS42 hypothetical protein YP_988271.1 4367183 R 232721 CDS YP_988272.1 121596376 4674245 complement(4368551..4370302) 1 NC_008782.1 KEGG: dar:Daro_3715 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 4370302 4674245 Ajs_4093 Acidovorax sp. JS42 twin-arginine translocation pathway signal protein YP_988272.1 4368551 R 232721 CDS YP_988273.1 121596377 4674144 complement(4370382..4371947) 1 NC_008782.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 4371947 4674144 Ajs_4094 Acidovorax sp. JS42 spermidine synthase YP_988273.1 4370382 R 232721 CDS YP_988274.1 121596378 4674165 complement(4371944..4374643) 1 NC_008782.1 PFAM: type III restriction enzyme, res subunit; KEGG: gme:Gmet_0675 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit 4374643 4674165 Ajs_4095 Acidovorax sp. JS42 type III restriction enzyme, res subunit YP_988274.1 4371944 R 232721 CDS YP_988275.1 121596379 4674090 complement(4374903..4376540) 1 NC_008782.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase; DNA methylase N-4/N-6 domain-containing protein 4376540 4674090 Ajs_4096 Acidovorax sp. JS42 DNA methylase N-4/N-6 domain-containing protein YP_988275.1 4374903 R 232721 CDS YP_988276.1 121596380 4673711 complement(4376620..4376841) 1 NC_008782.1 PFAM: protein of unknown function DUF350; KEGG: aba:Acid345_0110 protein of unknown function DUF350; hypothetical protein 4376841 4673711 Ajs_4097 Acidovorax sp. JS42 hypothetical protein YP_988276.1 4376620 R 232721 CDS YP_988277.1 121596381 4673685 complement(4376891..4378387) 1 NC_008782.1 KEGG: rme:Rmet_3458 putative transmembrane protein; hypothetical protein 4378387 4673685 Ajs_4098 Acidovorax sp. JS42 hypothetical protein YP_988277.1 4376891 R 232721 CDS YP_988278.1 121596382 4673682 complement(4378470..4379585) 1 NC_008782.1 KEGG: dar:Daro_3752 putative transmembrane protein; hypothetical protein 4379585 4673682 Ajs_4099 Acidovorax sp. JS42 hypothetical protein YP_988278.1 4378470 R 232721 CDS YP_988279.1 121596383 4673675 4379691..4379957 1 NC_008782.1 KEGG: pol:Bpro_4856 hypothetical protein; hypothetical protein 4379957 4673675 Ajs_4100 Acidovorax sp. JS42 hypothetical protein YP_988279.1 4379691 D 232721 CDS YP_988280.1 121596384 4673659 complement(4380397..4380702) 1 NC_008782.1 PFAM: flagellar basal body rod protein; KEGG: xom:XOO_2971 hypothetical protein; flagellar basal body rod protein 4380702 4673659 Ajs_4101 Acidovorax sp. JS42 flagellar basal body rod protein YP_988280.1 4380397 R 232721 CDS YP_988281.1 121596385 4673656 complement(4380757..4381695) 1 NC_008782.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4285 transcriptional regulator, LysR family; LysR family transcriptional regulator 4381695 4673656 Ajs_4102 Acidovorax sp. JS42 LysR family transcriptional regulator YP_988281.1 4380757 R 232721 CDS YP_988282.1 121596386 4673635 4381710..4383140 1 NC_008782.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 4383140 4673635 Ajs_4103 Acidovorax sp. JS42 beta alanine--pyruvate transaminase YP_988282.1 4381710 D 232721 CDS YP_988283.1 121596387 4673620 4383208..4384725 1 NC_008782.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0372 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4384725 4673620 Ajs_4104 Acidovorax sp. JS42 methylmalonate-semialdehyde dehydrogenase YP_988283.1 4383208 D 232721 CDS YP_988284.1 121596388 4673610 4386204..4388516 1 NC_008782.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 4388516 4673610 Ajs_4106 Acidovorax sp. JS42 malic enzyme YP_988284.1 4386204 D 232721 CDS YP_988285.1 121596389 4673595 4388671..4389075 1 NC_008782.1 PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rfr:Rfer_0094 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 4389075 4673595 Ajs_4107 Acidovorax sp. JS42 guanine-specific ribonuclease N1 and T1 YP_988285.1 4388671 D 232721 CDS YP_988286.1 121596390 4673538 4389216..4389641 1 NC_008782.1 KEGG: pol:Bpro_4860 hypothetical protein; hypothetical protein 4389641 4673538 Ajs_4108 Acidovorax sp. JS42 hypothetical protein YP_988286.1 4389216 D 232721 CDS YP_988287.1 121596391 4673527 complement(4389936..4390697) 1 NC_008782.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4390697 ksgA 4673527 ksgA Acidovorax sp. JS42 dimethyladenosine transferase YP_988287.1 4389936 R 232721 CDS YP_988288.1 121596392 4673476 complement(4390694..4392109) 1 NC_008782.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4392109 4673476 Ajs_4111 Acidovorax sp. JS42 PpiC-type peptidyl-prolyl cis-trans isomerase YP_988288.1 4390694 R 232721 CDS YP_988289.1 121596393 4673426 complement(4392155..4394506) 1 NC_008782.1 PFAM: Organic solvent tolerance protein; KEGG: rfr:Rfer_0098 organic solvent tolerance protein; organic solvent tolerance protein 4394506 4673426 Ajs_4112 Acidovorax sp. JS42 organic solvent tolerance protein YP_988289.1 4392155 R 232721 CDS YP_988290.1 121596394 4673420 4394695..4395858 1 NC_008782.1 PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_0099 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4395858 4673420 Ajs_4113 Acidovorax sp. JS42 aminoglycoside phosphotransferase YP_988290.1 4394695 D 232721 CDS YP_988291.1 121596395 4673413 4395926..4396654 1 NC_008782.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4396654 4673413 Ajs_4114 Acidovorax sp. JS42 16S ribosomal RNA methyltransferase RsmE YP_988291.1 4395926 D 232721 CDS YP_988292.1 121596396 4673400 4396654..4398081 1 NC_008782.1 hypothetical protein 4398081 4673400 Ajs_4115 Acidovorax sp. JS42 hypothetical protein YP_988292.1 4396654 D 232721 CDS YP_988293.1 121596397 4673381 4398074..4398796 1 NC_008782.1 KEGG: cvi:CV0860 hypothetical protein; hypothetical protein 4398796 4673381 Ajs_4116 Acidovorax sp. JS42 hypothetical protein YP_988293.1 4398074 D 232721 CDS YP_988294.1 121596398 4673224 4398802..4401636 1 NC_008782.1 PFAM: SMC domain protein; KEGG: bpm:BURPS1710b_2543 hypothetical protein; SMC domain-containing protein 4401636 4673224 Ajs_4117 Acidovorax sp. JS42 SMC domain-containing protein YP_988294.1 4398802 D 232721 CDS YP_988295.1 121596399 4673334 4401633..4402382 1 NC_008782.1 KEGG: bpm:BURPS1710b_2542 hypothetical protein; hypothetical protein 4402382 4673334 Ajs_4118 Acidovorax sp. JS42 hypothetical protein YP_988295.1 4401633 D 232721 CDS YP_988296.1 121596400 4672972 4402586..4403734 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein; diguanylate cyclase 4403734 4672972 Ajs_4119 Acidovorax sp. JS42 diguanylate cyclase YP_988296.1 4402586 D 232721 CDS YP_988297.1 121596401 4672947 complement(4403802..4404677) 1 NC_008782.1 PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0402 alpha/beta hydrolase; alpha/beta hydrolase fold protein 4404677 4672947 Ajs_4120 Acidovorax sp. JS42 alpha/beta hydrolase fold protein YP_988297.1 4403802 R 232721 CDS YP_988298.1 121596402 4672721 complement(4404692..4406155) 1 NC_008782.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rfr:Rfer_0403 peptidase M20; peptidase M20 4406155 4672721 Ajs_4121 Acidovorax sp. JS42 peptidase M20 YP_988298.1 4404692 R 232721 CDS YP_988299.1 121596403 4672910 complement(4406506..4407693) 1 NC_008782.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bpe:BP1441 probable membrane protein; diguanylate cyclase 4407693 4672910 Ajs_4122 Acidovorax sp. JS42 diguanylate cyclase YP_988299.1 4406506 R 232721 CDS YP_988300.1 121596404 4672904 complement(4407774..4409798) 1 NC_008782.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein; methyl-accepting chemotaxis sensory transducer 4409798 4672904 Ajs_4123 Acidovorax sp. JS42 methyl-accepting chemotaxis sensory transducer YP_988300.1 4407774 R 232721 CDS YP_988301.1 121596405 4672892 complement(4410053..4410637) 1 NC_008782.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW; methionine biosynthesis protein MetW 4410637 4672892 Ajs_4124 Acidovorax sp. JS42 methionine biosynthesis protein MetW YP_988301.1 4410053 R 232721 CDS YP_988302.1 121596406 4672822 complement(4410634..4411773) 1 NC_008782.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 4411773 metX 4672822 metX Acidovorax sp. JS42 homoserine O-acetyltransferase YP_988302.1 4410634 R 232721 CDS YP_988303.1 121596407 4672819 complement(4411910..4412488) 1 NC_008782.1 PFAM: protein of unknown function UPF0016; KEGG: rfr:Rfer_0520 protein of unknown function UPF0016; hypothetical protein 4412488 4672819 Ajs_4126 Acidovorax sp. JS42 hypothetical protein YP_988303.1 4411910 R 232721 CDS YP_988304.1 121596408 4672669 4412966..4413331 1 NC_008782.1 PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1; RNP-1 like RNA-binding protein 4413331 4672669 Ajs_4127 Acidovorax sp. JS42 RNP-1 like RNA-binding protein YP_988304.1 4412966 D 232721 CDS YP_988305.1 121596409 4672663 4413574..4414023 1 NC_008782.1 PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 4414023 4672663 Ajs_4128 Acidovorax sp. JS42 RNP-1 like RNA-binding protein YP_988305.1 4413574 D 232721 CDS YP_988306.1 121596410 4672804 complement(4414097..4414909) 1 NC_008782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4895 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4414909 4672804 Ajs_4129 Acidovorax sp. JS42 short chain dehydrogenase YP_988306.1 4414097 R 232721 CDS YP_988307.1 121596411 4672797 complement(4414915..4415535) 1 NC_008782.1 PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239; hypothetical protein 4415535 4672797 Ajs_4130 Acidovorax sp. JS42 hypothetical protein YP_988307.1 4414915 R 232721 CDS YP_988308.1 121596412 4672790 complement(4415532..4416110) 1 NC_008782.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 4416110 4672790 Ajs_4131 Acidovorax sp. JS42 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_988308.1 4415532 R 232721 CDS YP_988309.1 121596413 4672784 complement(4416110..4417111) 1 NC_008782.1 KEGG: rfr:Rfer_4237 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 4417111 4672784 Ajs_4132 Acidovorax sp. JS42 KpsF/GutQ family protein YP_988309.1 4416110 R 232721 CDS YP_988310.1 121596414 4672776 4417160..4419145 1 NC_008782.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein; potassium efflux system protein 4419145 4672776 Ajs_4133 Acidovorax sp. JS42 potassium efflux system protein YP_988310.1 4417160 D 232721 CDS YP_988311.1 121596415 4672762 4419216..4419770 1 NC_008782.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4419770 4672762 Ajs_4134 Acidovorax sp. JS42 adenine phosphoribosyltransferase YP_988311.1 4419216 D 232721 CDS YP_988312.1 121596416 4672363 4419847..4420926 1 NC_008782.1 PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 4420926 4672363 Ajs_4135 Acidovorax sp. JS42 integrase catalytic subunit YP_988312.1 4419847 D 232721 CDS YP_988313.1 121596417 4672023 complement(4421256..4422095) 1 NC_008782.1 KEGG: rfr:Rfer_4240 hypothetical protein; hypothetical protein 4422095 4672023 Ajs_4136 Acidovorax sp. JS42 hypothetical protein YP_988313.1 4421256 R 232721 CDS YP_988314.1 121596418 4672312 complement(4422232..4422765) 1 NC_008782.1 PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein 4422765 4672312 Ajs_4137 Acidovorax sp. JS42 cyclic nucleotide-binding protein YP_988314.1 4422232 R 232721 CDS YP_988315.1 121596419 4672215 complement(4422811..4424271) 1 NC_008782.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4424271 trmE 4672215 trmE Acidovorax sp. JS42 tRNA modification GTPase TrmE YP_988315.1 4422811 R 232721 CDS YP_988316.1 121596420 4672212 complement(4424429..4426015) 1 NC_008782.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic); extracellular solute-binding protein 4426015 4672212 Ajs_4139 Acidovorax sp. JS42 extracellular solute-binding protein YP_988316.1 4424429 R 232721 CDS YP_988317.1 121596421 4672207 complement(4426146..4427858) 1 NC_008782.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein; protein translocase subunit yidC 4427858 4672207 Ajs_4140 Acidovorax sp. JS42 protein translocase subunit yidC YP_988317.1 4426146 R 232721 CDS YP_988318.1 121596422 4672125 complement(4427855..4428151) 1 NC_008782.1 PFAM: protein of unknown function DUF37; KEGG: rfr:Rfer_4243 protein of unknown function DUF37; hypothetical protein 4428151 4672125 Ajs_4141 Acidovorax sp. JS42 hypothetical protein YP_988318.1 4427855 R 232721 CDS YP_988319.1 121596423 4672123 complement(4428148..4428621) 1 NC_008782.1 KEGG: rfr:Rfer_4244 hypothetical protein; hypothetical protein 4428621 4672123 Ajs_4142 Acidovorax sp. JS42 hypothetical protein YP_988319.1 4428148 R 232721 CDS YP_988320.1 121596424 4671969 complement(4428692..4428826) 1 NC_008782.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4428826 rpmH 4671969 rpmH Acidovorax sp. JS42 50S ribosomal protein L34 YP_988320.1 4428692 R 232721 CDS YP_988321.1 121596425 4672095 4429148..4430569 1 NC_008782.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4430569 dnaA 4672095 dnaA Acidovorax sp. JS42 chromosomal replication initiation protein YP_988321.1 4429148 D 232721 CDS YP_988322.1 121596426 4672079 4430714..4431820 1 NC_008782.1 KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 4431820 4672079 Ajs_4145 Acidovorax sp. JS42 DNA polymerase III subunit beta YP_988322.1 4430714 D 232721 CDS YP_988323.1 121596427 4672071 4431938..4434544 1 NC_008782.1 KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4434544 4672071 Ajs_4146 Acidovorax sp. JS42 DNA gyrase subunit B YP_988323.1 4431938 D 232721 CDS YP_988324.1 121596428 4671690 complement(4434698..4435003) 1 NC_008782.1 KEGG: atc:AGR_C_3308 hypothetical protein; hypothetical protein 4435003 4671690 Ajs_4147 Acidovorax sp. JS42 hypothetical protein YP_988324.1 4434698 R 232721 CDS YP_988325.1 121596429 4671664 4435101..4435622 1 NC_008782.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2453 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 4435622 4671664 Ajs_4148 Acidovorax sp. JS42 GCN5-like N-acetyltransferase YP_988325.1 4435101 D 232721 CDS YP_988326.1 121596430 4671663 4435619..4436032 1 NC_008782.1 PFAM: protein of unknown function UPF0153; KEGG: cvi:CV0280 hypothetical protein; hypothetical protein 4436032 4671663 Ajs_4149 Acidovorax sp. JS42 hypothetical protein YP_988326.1 4435619 D 232721 CDS YP_988327.1 121596431 4671424 4436139..4436576 1 NC_008782.1 PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein; OsmC family protein 4436576 4671424 Ajs_4150 Acidovorax sp. JS42 OsmC family protein YP_988327.1 4436139 D 232721 CDS YP_988328.1 121596432 4671416 4436573..4437352 1 NC_008782.1 PFAM: protein of unknown function DUF72; KEGG: pol:Bpro_4869 protein of unknown function DUF72; hypothetical protein 4437352 4671416 Ajs_4151 Acidovorax sp. JS42 hypothetical protein YP_988328.1 4436573 D 232721 CDS YP_988329.1 121596433 4671413 complement(4437439..4437732) 1 NC_008782.1 PFAM: acylphosphatase; KEGG: tbd:Tbd_0859 putative acylphosphatase; acylphosphatase 4437732 4671413 Ajs_4152 Acidovorax sp. JS42 acylphosphatase YP_988329.1 4437439 R 232721 CDS YP_988330.1 121596434 4671409 4437773..4438006 1 NC_008782.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_4119 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4438006 4671409 Ajs_4153 Acidovorax sp. JS42 4Fe-4S ferredoxin YP_988330.1 4437773 D 232721 CDS YP_988331.1 121596435 4671558 4438068..4439663 1 NC_008782.1 PFAM: gamma-glutamyltranspeptidase; KEGG: bbr:BB1598 putative glutamyltransferase; gamma-glutamyltransferase 2 4439663 4671558 Ajs_4154 Acidovorax sp. JS42 gamma-glutamyltransferase 2 YP_988331.1 4438068 D 232721 CDS YP_988332.1 121596436 4671557 4440017..4441432 1 NC_008782.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 4441432 4671557 Ajs_4155 Acidovorax sp. JS42 homoserine dehydrogenase YP_988332.1 4440017 D 232721 CDS YP_988333.1 121596437 4671540 complement(4441485..4441793) 1 NC_008782.1 KEGG: pol:Bpro_0143 hypothetical protein; hypothetical protein 4441793 4671540 Ajs_4156 Acidovorax sp. JS42 hypothetical protein YP_988333.1 4441485 R 232721 CDS YP_988334.1 121596438 4671529 4442036..4443037 1 NC_008782.1 KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 4443037 4671529 Ajs_4157 Acidovorax sp. JS42 hypothetical protein YP_988334.1 4442036 D 232721 CDS YP_988335.1 121596439 4670969 4443051..4445327 1 NC_008782.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 4445327 dinG 4670969 dinG Acidovorax sp. JS42 ATP-dependent DNA helicase DinG YP_988335.1 4443051 D 232721 CDS YP_988336.1 121596440 4670965 4445512..4445709 1 NC_008782.1 KEGG: rfr:Rfer_0182 hypothetical protein; hypothetical protein 4445709 4670965 Ajs_4159 Acidovorax sp. JS42 hypothetical protein YP_988336.1 4445512 D 232721 CDS YP_988337.1 121596441 4670957 4445857..4446513 1 NC_008782.1 KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4446513 4670957 Ajs_4160 Acidovorax sp. JS42 DNA polymerase III subunit epsilon YP_988337.1 4445857 D 232721 CDS YP_988338.1 121596442 4670920 4446722..4447228 1 NC_008782.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mxa:MXAN_0453 putative general stress protein 26; pyridoxamine 5'-phosphate oxidase-like protein 4447228 4670920 Ajs_4161 Acidovorax sp. JS42 pyridoxamine 5'-phosphate oxidase-like protein YP_988338.1 4446722 D 232721 CDS YP_988339.1 121596443 4670534 complement(4447522..4448850) 1 NC_008782.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: sco:SCO1360 GntR-family transcriptional regulator; GntR family transcriptional regulator 4448850 4670534 Ajs_4162 Acidovorax sp. JS42 GntR family transcriptional regulator YP_988339.1 4447522 R 232721 CDS