-- dump date 20111121_010106 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 232721000001 SEQ_END SEQ_END NC_008765.1 72689 72689 DR NC_008765.1; contig end 72689..72689 Acidovorax sp. JS42 232721000002 SEQ_END SEQ_END NC_008766.1 63609 63609 DR NC_008766.1; contig end 63609..63609 Acidovorax sp. JS42 232721000003 SEQ_END SEQ_END NC_008782.1 4448856 4448856 DR NC_008782.1; contig end 4448856..4448856 Acidovorax sp. JS42 YP_973999.1 CDS Ajs_4163 NC_008765.1 64 324 R KEGG: rme:Rmet_4020 hypothetical protein; hypothetical protein complement(64..324) Acidovorax sp. JS42 4670380 YP_974000.1 CDS Ajs_4164 NC_008765.1 332 1057 R PFAM: peptidase M48, Ste24p; KEGG: dar:Daro_0023 peptidase M48, Ste24p; peptidase M48, Ste24p complement(332..1057) Acidovorax sp. JS42 4670373 YP_974001.1 CDS Ajs_4165 NC_008765.1 1133 1516 R hypothetical protein complement(1133..1516) Acidovorax sp. JS42 4670425 YP_974002.1 CDS Ajs_4166 NC_008765.1 1546 1800 D hypothetical protein 1546..1800 Acidovorax sp. JS42 4670365 YP_974003.1 CDS Ajs_4167 NC_008765.1 2127 5174 R PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein; TraG domain-containing protein complement(2127..5174) Acidovorax sp. JS42 4670369 YP_974004.1 CDS Ajs_4168 NC_008765.1 5186 6592 R PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein; TraH family protein complement(5186..6592) Acidovorax sp. JS42 4670349 YP_974005.1 CDS Ajs_4169 NC_008765.1 6603 7415 R KEGG: dar:Daro_2662 hypothetical protein; hypothetical protein complement(6603..7415) Acidovorax sp. JS42 4670408 YP_974006.1 CDS Ajs_4170 NC_008765.1 7420 7782 R KEGG: eba:ebA6631 hypothetical protein; hypothetical protein complement(7420..7782) Acidovorax sp. JS42 4670368 YP_974007.1 CDS Ajs_4171 NC_008765.1 7779 9023 R TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN complement(7779..9023) Acidovorax sp. JS42 4670345 YP_974008.1 CDS Ajs_4172 NC_008765.1 9020 10318 R hypothetical protein complement(9020..10318) Acidovorax sp. JS42 4670399 YP_974009.1 CDS Ajs_4173 NC_008765.1 10315 11091 R KEGG: dar:Daro_2659 hypothetical protein; hypothetical protein complement(10315..11091) Acidovorax sp. JS42 4670363 YP_974010.1 CDS Ajs_4174 NC_008765.1 11091 12092 R PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein; TraU family protein complement(11091..12092) Acidovorax sp. JS42 4670362 YP_974011.1 CDS Ajs_4175 NC_008765.1 12089 12727 R KEGG: dar:Daro_2324 hypothetical protein; hypothetical protein complement(12089..12727) Acidovorax sp. JS42 4670371 YP_974012.1 CDS Ajs_4176 NC_008765.1 12714 13190 R KEGG: eba:ebA6617 hypothetical protein; hypothetical protein complement(12714..13190) Acidovorax sp. JS42 4670370 YP_974013.1 CDS Ajs_4177 NC_008765.1 13190 13618 R hypothetical protein complement(13190..13618) Acidovorax sp. JS42 4670374 YP_974014.1 CDS Ajs_4178 NC_008765.1 13608 16232 R KEGG: dar:Daro_2653 hypothetical protein; hypothetical protein complement(13608..16232) Acidovorax sp. JS42 4670385 YP_974015.1 CDS Ajs_4179 NC_008765.1 16270 16920 R TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6611 hypothetical protein; membrane lipoprotein lipid attachment site complement(16270..16920) Acidovorax sp. JS42 4670350 YP_974016.1 CDS Ajs_4180 NC_008765.1 17063 17812 R KEGG: rme:Rmet_6169 protein-disulfide isomerase; protein-disulfide isomerase complement(17063..17812) Acidovorax sp. JS42 4670364 YP_974017.1 CDS Ajs_4181 NC_008765.1 17805 19154 R PFAM: TraB pilus assembly family protein; KEGG: dar:Daro_2650 TraB pilus assembly; TraB pilus assembly family protein complement(17805..19154) Acidovorax sp. JS42 4670354 YP_974018.1 CDS Ajs_4182 NC_008765.1 19147 19884 R KEGG: dar:Daro_2316 hypothetical protein; hypothetical protein complement(19147..19884) Acidovorax sp. JS42 4670389 YP_974019.1 CDS Ajs_4183 NC_008765.1 19820 20413 R KEGG: dar:Daro_2315 plasmid-like conjugative transfer protein TraE; hypothetical protein complement(19820..20413) Acidovorax sp. JS42 4670405 YP_974020.1 CDS Ajs_4184 NC_008765.1 20428 20721 R KEGG: dar:Daro_2647 TraL; hypothetical protein complement(20428..20721) Acidovorax sp. JS42 4670417 YP_974021.1 CDS Ajs_4185 NC_008765.1 20737 21069 R hypothetical protein complement(20737..21069) Acidovorax sp. JS42 4670414 YP_974022.1 CDS Ajs_4186 NC_008765.1 21164 21547 R hypothetical protein complement(21164..21547) Acidovorax sp. JS42 4670391 YP_974023.1 CDS Ajs_4187 NC_008765.1 21549 22049 R PFAM: Lytic transglycosylase, catalytic; KEGG: rme:Rmet_6296 lytic transglycosylase, catalytic; lytic transglycosylase, catalytic complement(21549..22049) Acidovorax sp. JS42 4670348 YP_974024.1 CDS Ajs_4188 NC_008765.1 22495 23154 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mfa:Mfla_0815 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 22495..23154 Acidovorax sp. JS42 4670387 YP_974025.1 CDS Ajs_4189 NC_008765.1 23123 24091 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_00840 signal transduction histidine kinase, glucose-6-phosphate specific; integral membrane sensor signal transduction histidine kinase complement(23123..24091) Acidovorax sp. JS42 4670395 YP_974026.1 CDS Ajs_4190 NC_008765.1 24100 24375 R KEGG: pat:Patl_1718 hypothetical protein; hypothetical protein complement(24100..24375) Acidovorax sp. JS42 4670390 YP_974027.1 CDS Ajs_4191 NC_008765.1 24409 25263 R KEGG: fal:FRAAL3938 hypothetical protein; hypothetical protein complement(24409..25263) Acidovorax sp. JS42 4670421 YP_974028.1 CDS Ajs_4192 NC_008765.1 25708 28593 R KEGG: sal:Sala_2489 TrwC protein; TrwC protein complement(25708..28593) Acidovorax sp. JS42 4670346 YP_974029.1 CDS Ajs_4193 NC_008765.1 28590 29045 R KEGG: rso:RSc2990 probable thiol:disulfide interchange transmembrane protein; putative thiol:disulfide interchange transmembrane protein complement(28590..29045) Acidovorax sp. JS42 4670386 YP_974030.1 CDS Ajs_4194 NC_008765.1 29057 31054 R KEGG: lpn:lpg2078 TraD; hypothetical protein complement(29057..31054) Acidovorax sp. JS42 4670427 YP_974031.1 CDS Ajs_4195 NC_008765.1 31056 31433 R hypothetical protein complement(31056..31433) Acidovorax sp. JS42 4670358 YP_974032.1 CDS Ajs_4196 NC_008765.1 31746 32066 D hypothetical protein 31746..32066 Acidovorax sp. JS42 4670360 YP_974033.1 CDS Ajs_4197 NC_008765.1 32587 32880 D hypothetical protein 32587..32880 Acidovorax sp. JS42 4670353 YP_974034.1 CDS Ajs_4198 NC_008765.1 33517 34134 R PFAM: Resolvase, N-terminal domain; KEGG: son:SOA0172 site-specific recombinase, resolvase family; resolvase domain-containing protein complement(33517..34134) Acidovorax sp. JS42 4670429 YP_974035.1 CDS Ajs_4199 NC_008765.1 34142 34378 R hypothetical protein complement(34142..34378) Acidovorax sp. JS42 4670356 YP_974036.1 CDS Ajs_4200 NC_008765.1 34391 34717 R hypothetical protein complement(34391..34717) Acidovorax sp. JS42 4670404 YP_974037.1 CDS Ajs_4201 NC_008765.1 34732 35061 R hypothetical protein complement(34732..35061) Acidovorax sp. JS42 4670366 YP_974038.1 CDS Ajs_4202 NC_008765.1 35234 35728 R PFAM: DNA repair protein RadC; KEGG: xac:XAC2179 RadC family protein; DNA repair protein RadC complement(35234..35728) Acidovorax sp. JS42 4670424 YP_974039.1 CDS Ajs_4203 NC_008765.1 36284 36502 R KEGG: rfr:Rfer_4386 hypothetical protein; hypothetical protein complement(36284..36502) Acidovorax sp. JS42 4670382 YP_974040.1 CDS Ajs_4204 NC_008765.1 36546 36995 R hypothetical protein complement(36546..36995) Acidovorax sp. JS42 4670411 YP_974041.1 CDS Ajs_4205 NC_008765.1 37009 37476 R hypothetical protein complement(37009..37476) Acidovorax sp. JS42 4670377 YP_974042.1 CDS Ajs_4206 NC_008765.1 37530 39506 R PFAM: Methyltransferase type 11; KEGG: eci:UTI89_P088 hypothetical protein; methyltransferase type 11 complement(37530..39506) Acidovorax sp. JS42 4670415 YP_974043.1 CDS Ajs_4207 NC_008765.1 40603 40830 R hypothetical protein complement(40603..40830) Acidovorax sp. JS42 4670416 YP_974044.1 CDS Ajs_4208 NC_008765.1 40939 41244 R KEGG: eba:p1B366 hypothetical protein; hypothetical protein complement(40939..41244) Acidovorax sp. JS42 4670419 YP_974045.1 CDS Ajs_4209 NC_008765.1 41280 41621 R hypothetical protein complement(41280..41621) Acidovorax sp. JS42 4670418 YP_974046.1 CDS Ajs_4210 NC_008765.1 41691 42515 R PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932; hypothetical protein complement(41691..42515) Acidovorax sp. JS42 4670412 YP_974047.1 CDS Ajs_4211 NC_008765.1 42604 43035 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: swo:Swol_2539 single-strand binding protein; single-strand binding protein complement(42604..43035) Acidovorax sp. JS42 4670413 YP_974048.1 CDS Ajs_4212 NC_008765.1 43800 44351 R hypothetical protein complement(43800..44351) Acidovorax sp. JS42 4670351 YP_974049.1 CDS Ajs_4213 NC_008765.1 44370 44987 R KEGG: pol:Bpro_4968 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases like enzyme complement(44370..44987) Acidovorax sp. JS42 4670409 YP_974050.1 CDS Ajs_4214 NC_008765.1 45009 45923 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: pst:PSPTO_2386 C-5 cytosine-specific DNA methylase family protein; C-5 cytosine-specific DNA methylase complement(45009..45923) Acidovorax sp. JS42 4670410 YP_974051.1 CDS Ajs_4215 NC_008765.1 45928 46149 R hypothetical protein complement(45928..46149) Acidovorax sp. JS42 4670420 YP_974052.1 CDS Ajs_4216 NC_008765.1 46360 46860 R KEGG: rfr:Rfer_2821 hypothetical protein; hypothetical protein complement(46360..46860) Acidovorax sp. JS42 4670392 YP_974053.1 CDS Ajs_4217 NC_008765.1 46857 47765 R PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bcz:pE33L466_0012 possible DNA polymerase III fragment; exonuclease, RNase T and DNA polymerase III complement(46857..47765) Acidovorax sp. JS42 4670428 YP_974054.1 CDS Ajs_4218 NC_008765.1 47762 48805 R KEGG: bam:Bamb_6604 hypothetical protein; hypothetical protein complement(47762..48805) Acidovorax sp. JS42 4670394 YP_974055.1 CDS Ajs_4219 NC_008765.1 50359 51294 R KEGG: gox:GOX2704 RepA; hypothetical protein complement(50359..51294) Acidovorax sp. JS42 4670352 YP_974056.1 CDS Ajs_4220 NC_008765.1 51494 51808 R KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator complement(51494..51808) Acidovorax sp. JS42 4670355 YP_974057.1 CDS Ajs_4221 NC_008765.1 51805 52128 R PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein complement(51805..52128) Acidovorax sp. JS42 4670423 YP_974058.1 CDS Ajs_4222 NC_008765.1 52202 52600 R hypothetical protein complement(52202..52600) Acidovorax sp. JS42 4670422 YP_974059.1 CDS Ajs_4223 NC_008765.1 52662 53954 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: fth:FTH_0421 chromosome partition protein B; parB-like partition proteins complement(52662..53954) Acidovorax sp. JS42 4670403 YP_974060.1 CDS Ajs_4224 NC_008765.1 53967 54749 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: net:Neut_2592 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(53967..54749) Acidovorax sp. JS42 4670407 YP_974061.1 CDS Ajs_4225 NC_008765.1 54778 55197 R hypothetical protein complement(54778..55197) Acidovorax sp. JS42 4670406 YP_974062.1 CDS Ajs_4227 NC_008765.1 56343 56606 R KEGG: mes:Meso_3816 hypothetical protein; hypothetical protein complement(56343..56606) Acidovorax sp. JS42 4670401 YP_974063.1 CDS Ajs_4228 NC_008765.1 56797 59712 D PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 56797..59712 Acidovorax sp. JS42 4670388 YP_974064.1 CDS Ajs_4229 NC_008765.1 59806 60255 D hypothetical protein 59806..60255 Acidovorax sp. JS42 4670383 YP_974065.1 CDS Ajs_4230 NC_008765.1 60495 61157 R KEGG: rru:Rru_A0225 metal dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(60495..61157) Acidovorax sp. JS42 4670381 YP_974066.1 CDS Ajs_4231 NC_008765.1 61154 61681 R KEGG: rfr:Rfer_1207 aspartyl protease-like; aspartyl protease-like protein complement(61154..61681) Acidovorax sp. JS42 4670347 YP_974067.1 CDS Ajs_4232 NC_008765.1 61678 62418 R hypothetical protein complement(61678..62418) Acidovorax sp. JS42 4670361 YP_974068.1 CDS Ajs_4233 NC_008765.1 62466 63089 R PFAM: NERD domain protein; KEGG: noc:Noc_0649 DNA topoisomerase I; NERD domain-containing protein complement(62466..63089) Acidovorax sp. JS42 4670359 YP_974069.1 CDS Ajs_4234 NC_008765.1 63107 63808 R KEGG: net:Neut_1890 conserved hypothetical protein; hypothetical protein complement(63107..63808) Acidovorax sp. JS42 4670357 YP_974070.1 CDS Ajs_4235 NC_008765.1 63818 64861 R PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_2645 OmpA/MotB; OmpA/MotB domain-containing protein complement(63818..64861) Acidovorax sp. JS42 4670426 YP_974071.1 CDS Ajs_4236 NC_008765.1 64865 65140 R PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(64865..65140) Acidovorax sp. JS42 4670375 YP_974072.1 CDS Ajs_4237 NC_008765.1 65296 65820 R KEGG: bps:BPSL0759 hypothetical protein; hypothetical protein complement(65296..65820) Acidovorax sp. JS42 4670376 YP_974073.1 CDS Ajs_4238 NC_008765.1 65817 67028 R PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4329 protein of unknown function DUF1173; hypothetical protein complement(65817..67028) Acidovorax sp. JS42 4670402 YP_974074.1 CDS Ajs_4239 NC_008765.1 67044 68726 R PFAM: Zeta toxin family protein; KEGG: xac:XACb0057 hypothetical protein; zeta toxin family protein complement(67044..68726) Acidovorax sp. JS42 4670367 YP_974075.1 CDS Ajs_4240 NC_008765.1 68744 69004 R KEGG: xom:XOO_0047 hypothetical protein; hypothetical protein complement(68744..69004) Acidovorax sp. JS42 4670384 YP_974076.1 CDS Ajs_4241 NC_008765.1 69018 69479 R hypothetical protein complement(69018..69479) Acidovorax sp. JS42 4670372 YP_974077.1 CDS Ajs_4242 NC_008765.1 69512 70600 R PFAM: filamentation induced by cAMP protein Fic; KEGG: xft:PD1006 cell filamentation protein; filamentation induced by cAMP protein Fic complement(69512..70600) Acidovorax sp. JS42 4670378 YP_974078.1 CDS Ajs_4243 NC_008765.1 70597 70824 R hypothetical protein complement(70597..70824) Acidovorax sp. JS42 4670379 YP_974079.1 CDS Ajs_4244 NC_008765.1 70837 71100 R hypothetical protein complement(70837..71100) Acidovorax sp. JS42 4670393 YP_974080.1 CDS Ajs_4245 NC_008765.1 71328 71576 R hypothetical protein complement(71328..71576) Acidovorax sp. JS42 4670400 YP_974081.1 CDS Ajs_4246 NC_008765.1 71600 72124 R KEGG: dar:Daro_2214 hypothetical protein; hypothetical protein complement(71600..72124) Acidovorax sp. JS42 4670398 YP_974082.1 CDS Ajs_4247 NC_008765.1 72121 72534 R KEGG: dar:Daro_2528 hypothetical protein; hypothetical protein complement(72121..72534) Acidovorax sp. JS42 4670397 YP_974083.1 CDS Ajs_4248 NC_008766.1 4 4746 D PFAM: TOPRIM domain protein; domain of unknown function DUF1738; SMART: Toprim sub domain protein; KEGG: reu:Reut_D6521 toprim; hypothetical protein 4..4746 Acidovorax sp. JS42 4670502 YP_974084.1 CDS Ajs_4249 NC_008766.1 5044 5619 R PFAM: Resolvase, N-terminal domain; KEGG: xac:XACb0061 invertase recombinase-like protein; resolvase domain-containing protein complement(5044..5619) Acidovorax sp. JS42 4670492 YP_974085.1 CDS Ajs_4250 NC_008766.1 5746 6051 R TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: reu:Reut_D6454 plasmid stabilization system; addiction module antitoxin complement(5746..6051) Acidovorax sp. JS42 4670484 YP_974086.1 CDS Ajs_4251 NC_008766.1 6137 6355 D KEGG: tbd:Tbd_1809 hypothetical protein; hypothetical protein 6137..6355 Acidovorax sp. JS42 4670495 YP_974087.1 CDS Ajs_4252 NC_008766.1 6352 7308 D KEGG: ngo:NGO0873 DNA modification methylase M.NGOI; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 6352..7308 Acidovorax sp. JS42 4670497 YP_974088.1 CDS Ajs_4253 NC_008766.1 7308 8171 D KEGG: ngo:NGO0874 type II DNA restriction endonuclease R.NGOI; type II DNA restriction endonuclease R.NGOI 7308..8171 Acidovorax sp. JS42 4670500 YP_974089.1 CDS Ajs_4254 NC_008766.1 8338 8544 D hypothetical protein 8338..8544 Acidovorax sp. JS42 4670482 YP_974090.1 CDS Ajs_4255 NC_008766.1 8608 8841 R hypothetical protein complement(8608..8841) Acidovorax sp. JS42 4670480 YP_974091.1 CDS Ajs_4257 NC_008766.1 9010 9540 R KEGG: sdn:Sden_0296 hypothetical protein; hypothetical protein complement(9010..9540) Acidovorax sp. JS42 4670436 YP_974092.1 CDS Ajs_4258 NC_008766.1 9619 10293 R KEGG: reu:Reut_D6518 phage DNA methylase; phage DNA methylase complement(9619..10293) Acidovorax sp. JS42 4670489 YP_974093.1 CDS Ajs_4259 NC_008766.1 10449 10880 R KEGG: bam:Bamb_6620 hypothetical protein; hypothetical protein complement(10449..10880) Acidovorax sp. JS42 4670493 YP_974094.1 CDS Ajs_4260 NC_008766.1 10896 11594 R PFAM: TraX family protein; KEGG: bam:Bamb_6621 TraX family protein; conjugal transfer protein TrbP complement(10896..11594) Acidovorax sp. JS42 4670488 YP_974095.1 CDS Ajs_4261 NC_008766.1 11594 11860 R KEGG: bam:Bamb_6622 hypothetical protein; hypothetical protein complement(11594..11860) Acidovorax sp. JS42 4670479 YP_974096.1 CDS Ajs_4262 NC_008766.1 11889 12524 R PFAM: Lytic transglycosylase, catalytic; KEGG: bam:Bamb_6623 lytic transglycosylase, catalytic; conjugal transfer protein TrbN complement(11889..12524) Acidovorax sp. JS42 4670473 YP_974097.1 CDS Ajs_4263 NC_008766.1 12538 13122 R PFAM: TrbM family protein; KEGG: bam:Bamb_6624 TrbM family protein; conjugal transfer protein TrbM complement(12538..13122) Acidovorax sp. JS42 4670478 YP_974098.1 CDS Ajs_4264 NC_008766.1 13139 14872 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein; TrbL/VirB6 plasmid conjugal transfer protein complement(13139..14872) Acidovorax sp. JS42 4670477 YP_974099.1 CDS Ajs_4265 NC_008766.1 14883 15110 R KEGG: bam:Bamb_6626 entry exclusion protein TrbK; entry exclusion protein TrbK complement(14883..15110) Acidovorax sp. JS42 4670476 YP_974100.1 CDS Ajs_4266 NC_008766.1 15120 15884 R KEGG: bam:Bamb_6627 TrbJ protein of DNA transfer system; conjugal transfer protein TrbJ complement(15120..15884) Acidovorax sp. JS42 4670475 YP_974101.1 CDS Ajs_4267 NC_008766.1 15902 17320 R PFAM: conjugation TrbI family protein; KEGG: bam:Bamb_6628 conjugation TrbI family protein; conjugal transfer protein TrbI complement(15902..17320) Acidovorax sp. JS42 4670474 YP_974102.1 CDS Ajs_4268 NC_008766.1 17325 17813 R PFAM: Conjugal transfer TrbH family protein; KEGG: bam:Bamb_6629 conjugal transfer TrbH family protein; conjugal transfer protein TrbH complement(17325..17813) Acidovorax sp. JS42 4670469 YP_974103.1 CDS Ajs_4269 NC_008766.1 17816 18715 R type IV secretion system VirB9/CagX family; conjugal transfer protein TrbG complement(17816..18715) Acidovorax sp. JS42 4670494 YP_974104.1 CDS Ajs_4270 NC_008766.1 18733 19515 R PFAM: Conjugal transfer protein; KEGG: bam:Bamb_6631 conjugal transfer protein; conjugal transfer protein TrbF complement(18733..19515) Acidovorax sp. JS42 4670487 YP_974105.1 CDS Ajs_4271 NC_008766.1 19512 22070 R type IV secretion system ATPase VirB4 family; conjugal transfer protein TrbE complement(19512..22070) Acidovorax sp. JS42 4670491 YP_974106.1 CDS Ajs_4272 NC_008766.1 22067 22378 R PFAM: Conjugal transfer TrbD family protein; KEGG: bam:Bamb_6633 conjugal transfer TrbD family protein; conjugal transfer protein TrbD complement(22067..22378) Acidovorax sp. JS42 4670498 YP_974107.1 CDS Ajs_4273 NC_008766.1 22382 22846 R PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(22382..22846) Acidovorax sp. JS42 4670501 YP_974108.1 CDS Ajs_4274 NC_008766.1 22859 23824 R PFAM: type II secretion system protein E; KEGG: bam:Bamb_6635 type II secretion system protein E; conjugal transfer ATPase TrbB complement(22859..23824) Acidovorax sp. JS42 4670496 YP_974109.1 CDS Ajs_4275 NC_008766.1 24135 24497 R TrbA repressor; conjugal transfer protein TrbA complement(24135..24497) Acidovorax sp. JS42 4670499 YP_974110.1 CDS Ajs_4276 NC_008766.1 24606 24944 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bam:Bamb_6592 single-strand binding protein; single-strand binding protein 24606..24944 Acidovorax sp. JS42 4670486 YP_974111.1 CDS Ajs_4277 NC_008766.1 24992 26215 D PFAM: TrfA family protein; KEGG: bam:Bamb_6593 TrfA family protein; TrfA family protein 24992..26215 Acidovorax sp. JS42 4670485 YP_974112.1 CDS Ajs_4278 NC_008766.1 26399 26614 R hypothetical protein complement(26399..26614) Acidovorax sp. JS42 4670483 YP_974113.1 CDS Ajs_4279 NC_008766.1 26769 29168 D PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 26769..29168 Acidovorax sp. JS42 4670481 YP_974114.1 CDS Ajs_4281 NC_008766.1 30539 30847 R KEGG: bam:Bamb_4312 hypothetical protein; hypothetical protein complement(30539..30847) Acidovorax sp. JS42 4670437 YP_974115.1 CDS Ajs_4283 NC_008766.1 32516 34096 D PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 32516..34096 Acidovorax sp. JS42 4670443 YP_974116.1 CDS Ajs_4284 NC_008766.1 34349 35143 D PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro03880 4-oxalocrotonate decarboxylase; hydratase/decarboxylase 34349..35143 Acidovorax sp. JS42 4670461 YP_974117.1 CDS Ajs_4285 NC_008766.1 35214 35570 D hypothetical protein 35214..35570 Acidovorax sp. JS42 4670445 YP_974118.1 CDS Ajs_4288 NC_008766.1 35859 38774 D PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3; transposase Tn3 family protein 35859..38774 Acidovorax sp. JS42 4670434 YP_974119.1 CDS Ajs_4290 NC_008766.1 39194 40810 D PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase 39194..40810 Acidovorax sp. JS42 4670433 YP_974120.1 CDS Ajs_4292 NC_008766.1 41801 42511 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pfo:Pfl_0302 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(41801..42511) Acidovorax sp. JS42 4670432 YP_974121.1 CDS Ajs_4294 NC_008766.1 43481 43969 D hypothetical protein 43481..43969 Acidovorax sp. JS42 4670431 YP_974122.1 CDS Ajs_4296 NC_008766.1 44596 44877 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: reu:Reut_D6454 plasmid stabilization system; addiction module antitoxin complement(44596..44877) Acidovorax sp. JS42 4670430 YP_974123.1 CDS Ajs_4297 NC_008766.1 44864 45127 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: reu:Reut_D6453 RelB antitoxin; addiction module antitoxin complement(44864..45127) Acidovorax sp. JS42 4670455 YP_974124.1 CDS Ajs_4298 NC_008766.1 45298 45729 D PFAM: Antirestriction protein; KEGG: reu:Reut_D6452 antirestriction protein; antirestriction protein 45298..45729 Acidovorax sp. JS42 4670447 YP_974125.1 CDS Ajs_4299 NC_008766.1 45774 45992 D KEGG: reu:Reut_D6451 hypothetical protein; hypothetical protein 45774..45992 Acidovorax sp. JS42 4670446 YP_974126.1 CDS Ajs_4300 NC_008766.1 46004 47206 D KEGG: reu:Reut_D6450 hypothetical protein; hypothetical protein 46004..47206 Acidovorax sp. JS42 4670454 YP_974127.1 CDS Ajs_4301 NC_008766.1 47223 47480 D KEGG: reu:Reut_D6449 hypothetical protein; hypothetical protein 47223..47480 Acidovorax sp. JS42 4670453 YP_974128.1 CDS Ajs_4302 NC_008766.1 47637 47873 D KEGG: reu:Reut_D6448 hypothetical protein; hypothetical protein 47637..47873 Acidovorax sp. JS42 4670452 YP_974129.1 CDS Ajs_4303 NC_008766.1 48082 48408 D KEGG: reu:Reut_D6447 hypothetical protein; hypothetical protein 48082..48408 Acidovorax sp. JS42 4670451 YP_974130.1 CDS Ajs_4304 NC_008766.1 48411 48740 D KEGG: reu:Reut_D6446 hypothetical protein; hypothetical protein 48411..48740 Acidovorax sp. JS42 4670450 YP_974131.1 CDS Ajs_4305 NC_008766.1 48834 49916 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: reu:Reut_D6445 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 48834..49916 Acidovorax sp. JS42 4670449 YP_974132.1 CDS Ajs_4306 NC_008766.1 49913 50980 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: bam:Bamb_6603 ParB-like partition proteins; ParB family protein 49913..50980 Acidovorax sp. JS42 4670448 YP_974133.1 CDS Ajs_4307 NC_008766.1 51182 52189 D KEGG: reu:Reut_D6443 hypothetical protein; hypothetical protein 51182..52189 Acidovorax sp. JS42 4670462 YP_974134.1 CDS Ajs_4308 NC_008766.1 52360 52707 D KEGG: bam:Bamb_6605 putative conjugation protein TraO; putative conjugation protein TraO 52360..52707 Acidovorax sp. JS42 4670467 YP_974135.1 CDS Ajs_4309 NC_008766.1 52737 53375 D KEGG: bam:Bamb_6606 hypothetical protein; hypothetical protein 52737..53375 Acidovorax sp. JS42 4670460 YP_974136.1 CDS Ajs_4310 NC_008766.1 53571 54011 R KEGG: bam:Bamb_6607 TraM protein; conjugal transfer protein TraM complement(53571..54011) Acidovorax sp. JS42 4670472 YP_974137.1 CDS Ajs_4311 NC_008766.1 54011 54736 R KEGG: reu:Reut_D6529 transfer origin protein, TraL; conjugal transfer protein TraL complement(54011..54736) Acidovorax sp. JS42 4670471 YP_974138.1 CDS Ajs_4312 NC_008766.1 54736 55155 R KEGG: bam:Bamb_6609 TraK protein of DNA transfer system; TraK protein of DNA transfer system complement(54736..55155) Acidovorax sp. JS42 4670465 YP_974139.1 CDS Ajs_4313 NC_008766.1 55518 55739 D hypothetical protein 55518..55739 Acidovorax sp. JS42 4670456 YP_974140.1 CDS Ajs_4314 NC_008766.1 55744 56115 D KEGG: bam:Bamb_6610 TraJ protein of DNA transfer system; conjugal transfer relaxosome component TraJ 55744..56115 Acidovorax sp. JS42 4670459 YP_974141.1 CDS Ajs_4315 NC_008766.1 56150 58408 D PFAM: Relaxase/mobilization nuclease family protein; KEGG: reu:Reut_D6526 relaxase/mobilization nuclease domain; conjugal transfer relaxase TraI 56150..58408 Acidovorax sp. JS42 4670438 YP_974142.1 CDS Ajs_4316 NC_008766.1 58405 58680 D KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK; putative entry/exclusion protein TrbK 58405..58680 Acidovorax sp. JS42 4670442 YP_974143.1 CDS Ajs_4317 NC_008766.1 58677 60581 D type IV secretion system VirD4 family; conjugal transfer coupling protein TraG 58677..60581 Acidovorax sp. JS42 4670441 YP_974144.1 CDS Ajs_4318 NC_008766.1 60578 61114 D KEGG: bam:Bamb_6613 TraF protein of DNA transfer system; conjugal transfer peptidase TraF 60578..61114 Acidovorax sp. JS42 4670444 YP_974145.1 CDS Ajs_4319 NC_008766.1 61129 63192 D KEGG: bam:Bamb_6614 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase III 61129..63192 Acidovorax sp. JS42 4670440 YP_974146.1 CDS Ajs_4320 NC_008766.1 63217 63609 D KEGG: bam:Bamb_6615 conjugal transfer protein; conjugal transfer protein 63217..63609 Acidovorax sp. JS42 4670439 YP_984333.1 CDS Ajs_0001 NC_008782.1 212 694 D PFAM: NLP/P60 protein; KEGG: rfr:Rfer_0741 NLP/P60; NLP/P60 protein 212..694 Acidovorax sp. JS42 4672148 YP_984334.1 CDS Ajs_0002 NC_008782.1 822 1922 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 822..1922 Acidovorax sp. JS42 4670651 YP_984335.1 CDS Ajs_0003 NC_008782.1 2149 4158 D KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2149..4158 Acidovorax sp. JS42 4671061 YP_984336.1 CDS Ajs_0004 NC_008782.1 4216 5019 R PFAM: regulatory proteins, IclR; KEGG: mag:amb2598 transcriptional regulator; regulatory proteins, IclR complement(4216..5019) Acidovorax sp. JS42 4671169 YP_984337.1 CDS Ajs_0005 NC_008782.1 5262 6233 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1420 twin-arginine translocation pathway signal; hypothetical protein 5262..6233 Acidovorax sp. JS42 4671332 YP_984338.1 CDS Ajs_0006 NC_008782.1 6572 7177 R KEGG: bxe:Bxe_A1159 hypothetical protein; hypothetical protein complement(6572..7177) Acidovorax sp. JS42 4671272 YP_984339.1 CDS Ajs_0007 NC_008782.1 7318 7947 R KEGG: pol:Bpro_0029 hypothetical protein; hypothetical protein complement(7318..7947) Acidovorax sp. JS42 4671717 YP_984340.1 CDS rdgC NC_008782.1 8260 9237 D Required for efficient pilin antigenic variation; recombination associated protein 8260..9237 Acidovorax sp. JS42 4671890 YP_984341.1 CDS Ajs_0009 NC_008782.1 9306 10658 R PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3471 C4-dicarboxylate transport protein; sodium:dicarboxylate symporter complement(9306..10658) Acidovorax sp. JS42 4672499 YP_984342.1 CDS Ajs_0010 NC_008782.1 10828 13482 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: xcb:XC_0818 sensor histidine kinase; multi-sensor hybrid histidine kinase 10828..13482 Acidovorax sp. JS42 4671875 YP_984343.1 CDS Ajs_0011 NC_008782.1 13553 14197 R PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: xcb:XC_0816 transcriptional regulator LuxR/UhpA family; two component LuxR family transcriptional regulator complement(13553..14197) Acidovorax sp. JS42 4672372 YP_984344.1 CDS Ajs_0012 NC_008782.1 14252 15505 D PFAM: nucleoside recognition domain protein; KEGG: rme:Rmet_3343 nucleoside recognition; nucleoside recognition domain-containing protein 14252..15505 Acidovorax sp. JS42 4672501 YP_984345.1 CDS Ajs_0013 NC_008782.1 15982 16272 D KEGG: pol:Bpro_4168 hypothetical protein; hypothetical protein 15982..16272 Acidovorax sp. JS42 4672770 YP_984346.1 CDS Ajs_0014 NC_008782.1 16463 17650 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(16463..17650) Acidovorax sp. JS42 4673009 YP_984347.1 CDS Ajs_0015 NC_008782.1 17647 18198 R PFAM: protein of unknown function DUF1130; KEGG: bbr:BB2477 hypothetical protein; hypothetical protein complement(17647..18198) Acidovorax sp. JS42 4673156 YP_984348.1 CDS Ajs_0016 NC_008782.1 18211 18426 R KEGG: nha:Nham_2097 hypothetical protein; hypothetical protein complement(18211..18426) Acidovorax sp. JS42 4673112 YP_984349.1 CDS Ajs_0017 NC_008782.1 18538 19041 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_0023 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(18538..19041) Acidovorax sp. JS42 4673761 YP_984350.1 CDS Ajs_0018 NC_008782.1 19038 19235 R PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein; heavy metal transport/detoxification protein complement(19038..19235) Acidovorax sp. JS42 4673818 YP_984351.1 CDS Ajs_0019 NC_008782.1 19413 21761 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0024 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 19413..21761 Acidovorax sp. JS42 4673897 YP_984352.1 CDS Ajs_0020 NC_008782.1 21945 23597 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 21945..23597 Acidovorax sp. JS42 4673872 YP_984353.1 CDS Ajs_0021 NC_008782.1 23784 24527 R KEGG: pen:PSEEN2125 hypothetical protein; hypothetical protein complement(23784..24527) Acidovorax sp. JS42 4674541 YP_984354.1 CDS Ajs_0022 NC_008782.1 24678 25802 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(24678..25802) Acidovorax sp. JS42 4674419 YP_984355.1 CDS Ajs_0023 NC_008782.1 26068 26676 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_0047 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(26068..26676) Acidovorax sp. JS42 4673698 YP_984356.1 CDS Ajs_0024 NC_008782.1 26810 27145 R PFAM: protein of unknown function UPF0153; KEGG: bbr:BB3393 hypothetical protein; hypothetical protein complement(26810..27145) Acidovorax sp. JS42 4673546 YP_984357.1 CDS Ajs_0025 NC_008782.1 27142 27726 R PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_0072 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(27142..27726) Acidovorax sp. JS42 4673484 YP_984358.1 CDS Ajs_0026 NC_008782.1 27939 29924 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 27939..29924 Acidovorax sp. JS42 4673432 YP_984359.1 CDS gidB NC_008782.1 29921 30601 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 29921..30601 Acidovorax sp. JS42 4673399 YP_984360.1 CDS Ajs_0028 NC_008782.1 30636 31250 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 30636..31250 Acidovorax sp. JS42 4672962 YP_984361.1 CDS Ajs_0029 NC_008782.1 31267 32037 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase; chromosome segregation ATPase 31267..32037 Acidovorax sp. JS42 4672695 YP_984362.1 CDS Ajs_0030 NC_008782.1 32124 32666 D PFAM: protein of unknown function DUF1234; KEGG: rfr:Rfer_0052 protein of unknown function DUF1234; hypothetical protein 32124..32666 Acidovorax sp. JS42 4672664 YP_984363.1 CDS Ajs_0031 NC_008782.1 32673 33668 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins; chromosome segregation DNA-binding protein 32673..33668 Acidovorax sp. JS42 4672022 YP_984364.1 CDS Ajs_0032 NC_008782.1 33694 34491 D PFAM: Methyltransferase type 12; KEGG: rfr:Rfer_0054 methyltransferase type 12; type 12 methyltransferase 33694..34491 Acidovorax sp. JS42 4672013 YP_984365.1 CDS Ajs_0033 NC_008782.1 34652 35692 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bur:Bcep18194_B2884 hypothetical protein; peptidoglycan-binding domain-containing protein 34652..35692 Acidovorax sp. JS42 4672246 YP_984366.1 CDS Ajs_0034 NC_008782.1 35848 36177 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_3017 hypothetical protein; sulfite dehydrogenase (cytochrome) subunit SorB complement(35848..36177) Acidovorax sp. JS42 4672209 YP_984367.1 CDS Ajs_0035 NC_008782.1 36284 37504 R PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pol:Bpro_3018 Mo-co oxidoreductase dimerisation domain; sulfite dehydrogenase (cytochrome) subunit SorA apoprotein complement(36284..37504) Acidovorax sp. JS42 4672168 YP_984368.1 CDS Ajs_0036 NC_008782.1 37587 38165 D hypothetical protein 37587..38165 Acidovorax sp. JS42 4672074 YP_984369.1 CDS Ajs_0037 NC_008782.1 38189 38761 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dar:Daro_0521 sigma-70 region 2:sigma-70 region 4; ECF subfamily RNA polymerase sigma-24 factor complement(38189..38761) Acidovorax sp. JS42 4671433 YP_984370.1 CDS Ajs_0038 NC_008782.1 38883 39749 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bpm:BURPS1710b_2619 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(38883..39749) Acidovorax sp. JS42 4671579 YP_984371.1 CDS Ajs_0039 NC_008782.1 39815 41077 D PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1964 major facilitator superfamily MFS_1; major facilitator superfamily transporter 39815..41077 Acidovorax sp. JS42 4671564 YP_984372.1 CDS Ajs_0040 NC_008782.1 41155 42579 R PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like; Fis family transcriptional regulator complement(41155..42579) Acidovorax sp. JS42 4671011 YP_984373.1 CDS Ajs_0041 NC_008782.1 42717 43796 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(42717..43796) Acidovorax sp. JS42 4670956 YP_984374.1 CDS Ajs_0042 NC_008782.1 44043 44423 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_0112 acid shock protein-like; calcium-binding EF-hand-containing protein complement(44043..44423) Acidovorax sp. JS42 4670857 YP_984375.1 CDS Ajs_0043 NC_008782.1 44579 45151 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase 44579..45151 Acidovorax sp. JS42 4670769 YP_984376.1 CDS Ajs_0044 NC_008782.1 45521 45943 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0061 phenylacetic acid degradation-related protein; hypothetical protein complement(45521..45943) Acidovorax sp. JS42 4670673 YP_984377.1 CDS Ajs_0045 NC_008782.1 46167 47324 D KEGG: dar:Daro_3540 extracellular ligand-binding receptor; extracellular ligand-binding receptor 46167..47324 Acidovorax sp. JS42 4670626 YP_984378.1 CDS Ajs_0046 NC_008782.1 47449 48969 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase complement(47449..48969) Acidovorax sp. JS42 4674675 YP_984379.1 CDS Ajs_0047 NC_008782.1 49169 49909 D KEGG: dar:Daro_1795 hypothetical protein; hypothetical protein 49169..49909 Acidovorax sp. JS42 4670604 YP_984380.1 CDS Ajs_0048 NC_008782.1 50045 51331 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease; uracil-xanthine permease complement(50045..51331) Acidovorax sp. JS42 4670699 YP_984381.1 CDS Ajs_0049 NC_008782.1 51534 52832 R KEGG: pfo:Pfl_4308 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(51534..52832) Acidovorax sp. JS42 4670560 YP_984382.1 CDS Ajs_0050 NC_008782.1 52711 54834 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: eba:ebA5328 conserved hypothetical protein, predicted radical-SAM emzyme; radical SAM domain-containing protein complement(52711..54834) Acidovorax sp. JS42 4671088 YP_984383.1 CDS Ajs_0052 NC_008782.1 56009 57274 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: xcc:XCC2647 hypothetical protein; hypothetical protein complement(56009..57274) Acidovorax sp. JS42 4671134 YP_984384.1 CDS Ajs_0053 NC_008782.1 57396 57686 D hypothetical protein 57396..57686 Acidovorax sp. JS42 4671151 YP_984385.1 CDS Ajs_0054 NC_008782.1 57800 60064 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 57800..60064 Acidovorax sp. JS42 4671172 YP_984386.1 CDS Ajs_0055 NC_008782.1 60098 61027 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B3561 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(60098..61027) Acidovorax sp. JS42 4671340 YP_984387.1 CDS Ajs_0056 NC_008782.1 61158 62144 D PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP3809 hypothetical protein; hypothetical protein 61158..62144 Acidovorax sp. JS42 4670587 YP_984388.1 CDS Ajs_0057 NC_008782.1 62141 63388 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pfo:Pfl_0118 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 62141..63388 Acidovorax sp. JS42 4671515 YP_984389.1 CDS Ajs_0058 NC_008782.1 63385 64581 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3560 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 63385..64581 Acidovorax sp. JS42 4671257 YP_984390.1 CDS Ajs_0059 NC_008782.1 64578 65045 D KEGG: reu:Reut_B3559 hypothetical protein; hypothetical protein 64578..65045 Acidovorax sp. JS42 4671613 YP_984391.1 CDS Ajs_0060 NC_008782.1 65113 66081 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4073 uncharacterized protein UPF0065; hypothetical protein 65113..66081 Acidovorax sp. JS42 4671833 YP_984392.1 CDS Ajs_0061 NC_008782.1 66104 67261 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eba:p2A7 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 66104..67261 Acidovorax sp. JS42 4671899 YP_984393.1 CDS Ajs_0062 NC_008782.1 67276 68307 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_B3556 acyl-CoA dehydrogenase, C-terminal; acyl-CoA dehydrogenase domain-containing protein 67276..68307 Acidovorax sp. JS42 4671869 YP_984394.1 CDS Ajs_0063 NC_008782.1 68417 69205 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 68417..69205 Acidovorax sp. JS42 4672078 YP_984395.1 CDS Ajs_0064 NC_008782.1 69263 69886 D TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 69263..69886 Acidovorax sp. JS42 4672089 YP_984396.1 CDS Ajs_0065 NC_008782.1 70118 70885 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: rfr:Rfer_0036 septum site-determining protein MinC; septum site-determining protein MinC 70118..70885 Acidovorax sp. JS42 4672317 YP_984397.1 CDS Ajs_0066 NC_008782.1 70937 71752 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD; septum site-determining protein MinD 70937..71752 Acidovorax sp. JS42 4672035 YP_984398.1 CDS Ajs_0067 NC_008782.1 71758 72024 D TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: rfr:Rfer_0034 cell division topological specificity factor MinE; cell division topological specificity factor MinE 71758..72024 Acidovorax sp. JS42 4672437 YP_984399.1 CDS Ajs_0068 NC_008782.1 72101 72661 R PFAM: flavin reductase domain protein, FMN-binding; KEGG: rfr:Rfer_4057 flavin reductase-like, FMN-binding; flavin reductase domain-containing protein complement(72101..72661) Acidovorax sp. JS42 4673149 YP_984400.1 CDS Ajs_0069 NC_008782.1 72768 73550 D PFAM: alpha/beta hydrolase fold; KEGG: bja:blr6083 putative hydrolase; alpha/beta hydrolase fold protein 72768..73550 Acidovorax sp. JS42 4672583 YP_984401.1 CDS Ajs_0070 NC_008782.1 73689 74879 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor; extracellular ligand-binding receptor 73689..74879 Acidovorax sp. JS42 4672480 YP_984402.1 CDS Ajs_0071 NC_008782.1 74892 76256 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase complement(74892..76256) Acidovorax sp. JS42 4673048 YP_984403.1 CDS Ajs_0072 NC_008782.1 76320 77231 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 76320..77231 Acidovorax sp. JS42 4673066 YP_984404.1 CDS Ajs_0073 NC_008782.1 77302 77934 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0153 transcriptional regulator, TetR family; TetR family transcriptional regulator 77302..77934 Acidovorax sp. JS42 4673143 YP_984405.1 CDS Ajs_0074 NC_008782.1 77935 78357 R PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA; UspA domain-containing protein complement(77935..78357) Acidovorax sp. JS42 4673457 YP_984406.1 CDS Ajs_0075 NC_008782.1 78477 79322 R PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase; metallophosphoesterase complement(78477..79322) Acidovorax sp. JS42 4673596 YP_984407.1 CDS Ajs_0076 NC_008782.1 79339 80310 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(79339..80310) Acidovorax sp. JS42 4673628 YP_984408.1 CDS Ajs_0077 NC_008782.1 80434 80874 D KEGG: pol:Bpro_0159 hypothetical protein; hypothetical protein 80434..80874 Acidovorax sp. JS42 4673690 YP_984409.1 CDS Ajs_0078 NC_008782.1 81052 82923 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(81052..82923) Acidovorax sp. JS42 4673772 YP_984410.1 CDS Ajs_0079 NC_008782.1 83258 83491 R hypothetical protein complement(83258..83491) Acidovorax sp. JS42 4673784 YP_984411.1 CDS Ajs_0080 NC_008782.1 83527 84726 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(83527..84726) Acidovorax sp. JS42 4673817 YP_984412.1 CDS Ajs_0081 NC_008782.1 84837 86492 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bam:Bamb_0107 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(84837..86492) Acidovorax sp. JS42 4674062 YP_984413.1 CDS Ajs_0082 NC_008782.1 86645 87307 R hypothetical protein complement(86645..87307) Acidovorax sp. JS42 4674033 YP_984414.1 CDS Ajs_0083 NC_008782.1 87355 88455 R PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase; methionine synthase complement(87355..88455) Acidovorax sp. JS42 4674343 YP_984415.1 CDS Ajs_0084 NC_008782.1 88553 90424 D KEGG: rfr:Rfer_0459 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 88553..90424 Acidovorax sp. JS42 4674537 YP_984416.1 CDS Ajs_0085 NC_008782.1 90425 91111 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_5137 ribonucleoside-triphosphate reductase, anaerobic-like protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(90425..91111) Acidovorax sp. JS42 4674510 YP_984417.1 CDS Ajs_0086 NC_008782.1 91101 91292 R KEGG: rme:Rmet_5138 hypothetical protein; hypothetical protein complement(91101..91292) Acidovorax sp. JS42 4674391 YP_984418.1 CDS Ajs_0087 NC_008782.1 91374 93410 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(91374..93410) Acidovorax sp. JS42 4674310 YP_984419.1 CDS Ajs_0088 NC_008782.1 93706 97032 R KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(93706..97032) Acidovorax sp. JS42 4673273 YP_984420.1 CDS Ajs_0089 NC_008782.1 97384 98472 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(97384..98472) Acidovorax sp. JS42 4673266 YP_984421.1 CDS Ajs_0090 NC_008782.1 98635 99714 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 98635..99714 Acidovorax sp. JS42 4673409 YP_984422.1 CDS Ajs_0091 NC_008782.1 99819 100244 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_0892 hemerythrin HHE cation binding protein; hemerythrin HHE cation-binding domain-containing protein complement(99819..100244) Acidovorax sp. JS42 4672984 YP_984423.1 CDS Ajs_0092 NC_008782.1 100319 102625 R KEGG: reu:Reut_B5055 nitric oxide reductase large subunit; nitric oxide reductase large subunit complement(100319..102625) Acidovorax sp. JS42 4672939 YP_984424.1 CDS Ajs_0093 NC_008782.1 102763 104385 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 102763..104385 Acidovorax sp. JS42 4672862 YP_984425.1 CDS Ajs_0094 NC_008782.1 104530 105579 D KEGG: lma:LmjF35.0290 hypothetical protein, conserved; hypothetical protein 104530..105579 Acidovorax sp. JS42 4672683 YP_984426.1 CDS Ajs_0095 NC_008782.1 105662 107050 D KEGG: pol:Bpro_4369 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase 105662..107050 Acidovorax sp. JS42 4672024 YP_984427.1 CDS Ajs_0096 NC_008782.1 107110 108318 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 107110..108318 Acidovorax sp. JS42 4672014 YP_984428.1 CDS Ajs_0097 NC_008782.1 108498 109448 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065; hypothetical protein 108498..109448 Acidovorax sp. JS42 4672009 YP_984429.1 CDS Ajs_0098 NC_008782.1 109495 111063 D PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1913 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 109495..111063 Acidovorax sp. JS42 4672205 YP_984430.1 CDS Ajs_0099 NC_008782.1 111091 112086 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5061 uncharacterized protein UPF0065; hypothetical protein 111091..112086 Acidovorax sp. JS42 4672180 YP_984431.1 CDS Ajs_0100 NC_008782.1 112249 112716 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A0210 phenylacetic acid degradation-related protein; hypothetical protein 112249..112716 Acidovorax sp. JS42 4672093 YP_984432.1 CDS Ajs_0101 NC_008782.1 112744 113763 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0242 hypothetical protein; hypothetical protein complement(112744..113763) Acidovorax sp. JS42 4671754 YP_984433.1 CDS Ajs_0102 NC_008782.1 114003 114989 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4501 twin-arginine translocation pathway signal; hypothetical protein complement(114003..114989) Acidovorax sp. JS42 4671435 YP_984434.1 CDS Ajs_0103 NC_008782.1 115034 116188 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_C0602 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(115034..116188) Acidovorax sp. JS42 4671405 YP_984435.1 CDS Ajs_0104 NC_008782.1 116267 117841 R PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5158 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(116267..117841) Acidovorax sp. JS42 4671483 YP_984436.1 CDS Ajs_0105 NC_008782.1 118051 119229 D KEGG: rme:Rmet_5156 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase 118051..119229 Acidovorax sp. JS42 4671038 YP_984437.1 CDS Ajs_0106 NC_008782.1 119295 120062 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1668 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 119295..120062 Acidovorax sp. JS42 4670914 YP_984438.1 CDS Ajs_0107 NC_008782.1 120249 121013 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 120249..121013 Acidovorax sp. JS42 4670752 YP_984439.1 CDS Ajs_0108 NC_008782.1 121113 122111 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5153 uncharacterized protein UPF0065; hypothetical protein 121113..122111 Acidovorax sp. JS42 4673261 YP_984440.1 CDS Ajs_0109 NC_008782.1 122124 122930 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sde:Sde_2377 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 122124..122930 Acidovorax sp. JS42 4670631 YP_984441.1 CDS Ajs_0110 NC_008782.1 122927 123721 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B3551 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 122927..123721 Acidovorax sp. JS42 4671397 YP_984442.1 CDS Ajs_0111 NC_008782.1 123762 124550 D SMART: regulatory proteins, IclR; KEGG: rme:Rmet_5157 transcriptional regulator, IclR family; regulatory proteins, IclR 123762..124550 Acidovorax sp. JS42 4671381 YP_984443.1 CDS Ajs_0112 NC_008782.1 124594 125706 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2536 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 124594..125706 Acidovorax sp. JS42 4671479 YP_984444.1 CDS Ajs_0113 NC_008782.1 125743 126966 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein; major facilitator superfamily transporter complement(125743..126966) Acidovorax sp. JS42 4671270 YP_984445.1 CDS Ajs_0114 NC_008782.1 127049 127918 R PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(127049..127918) Acidovorax sp. JS42 4670740 YP_984446.1 CDS Ajs_0115 NC_008782.1 128112 129119 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065; hypothetical protein complement(128112..129119) Acidovorax sp. JS42 4670958 YP_984447.1 CDS Ajs_0116 NC_008782.1 129285 130649 R PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD; MmgE/PrpD family protein complement(129285..130649) Acidovorax sp. JS42 4671219 YP_984448.1 CDS Ajs_0117 NC_008782.1 130700 131890 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(130700..131890) Acidovorax sp. JS42 4671480 YP_984449.1 CDS Ajs_0118 NC_008782.1 132084 133244 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(132084..133244) Acidovorax sp. JS42 4671539 YP_984450.1 CDS Ajs_0119 NC_008782.1 133316 134221 R KEGG: pol:Bpro_0584 hypothetical protein; hypothetical protein complement(133316..134221) Acidovorax sp. JS42 4671502 YP_984451.1 CDS Ajs_0120 NC_008782.1 134415 135332 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll6372 probable short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 134415..135332 Acidovorax sp. JS42 4671987 YP_984452.1 CDS Ajs_0121 NC_008782.1 135595 136488 D PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3807 MaoC-like dehydratase; dehydratase 135595..136488 Acidovorax sp. JS42 4672556 YP_984453.1 CDS Ajs_0122 NC_008782.1 136567 137361 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase; enoyl-CoA hydratase 136567..137361 Acidovorax sp. JS42 4671852 YP_984454.1 CDS Ajs_0123 NC_008782.1 137494 138819 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: bpa:BPP0600 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 137494..138819 Acidovorax sp. JS42 4672316 YP_984455.1 CDS Ajs_0124 NC_008782.1 138883 140091 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 138883..140091 Acidovorax sp. JS42 4672578 YP_984456.1 CDS Ajs_0125 NC_008782.1 140351 141325 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3797 uncharacterized protein UPF0065; hypothetical protein 140351..141325 Acidovorax sp. JS42 4672563 YP_984457.1 CDS Ajs_0126 NC_008782.1 141327 142841 D PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_3802 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 141327..142841 Acidovorax sp. JS42 4673215 YP_984458.1 CDS Ajs_0127 NC_008782.1 142859 143836 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3801 uncharacterized protein UPF0065; hypothetical protein 142859..143836 Acidovorax sp. JS42 4672670 YP_984459.1 CDS Ajs_0128 NC_008782.1 143932 144315 D PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3511 protein of unknown function DUF35; hypothetical protein 143932..144315 Acidovorax sp. JS42 4672952 YP_984460.1 CDS Ajs_0129 NC_008782.1 144312 145520 D KEGG: reu:Reut_B3512 thiolase; thiolase 144312..145520 Acidovorax sp. JS42 4672716 YP_984461.1 CDS Ajs_0130 NC_008782.1 145547 146704 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7329 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 145547..146704 Acidovorax sp. JS42 4674021 YP_984462.1 CDS Ajs_0131 NC_008782.1 146701 147123 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1837 hypothetical protein; hypothetical protein 146701..147123 Acidovorax sp. JS42 4673535 YP_984463.1 CDS Ajs_0132 NC_008782.1 147200 148108 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB2959 probable transcriptional regulator; LysR family transcriptional regulator complement(147200..148108) Acidovorax sp. JS42 4673793 YP_984464.1 CDS Ajs_0133 NC_008782.1 148245 149531 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_3808 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 148245..149531 Acidovorax sp. JS42 4673924 YP_984465.1 CDS Ajs_0134 NC_008782.1 149539 150513 R PFAM: porin, Gram-negative type; KEGG: bcn:Bcen_4125 porin, gram-negative type; porin complement(149539..150513) Acidovorax sp. JS42 4674072 YP_984466.1 CDS Ajs_0135 NC_008782.1 150871 152175 R PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, C terminal complement(150871..152175) Acidovorax sp. JS42 4674714 YP_984467.1 CDS Ajs_0136 NC_008782.1 152356 153273 R PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344; hypothetical protein complement(152356..153273) Acidovorax sp. JS42 4674612 YP_984468.1 CDS Ajs_0137 NC_008782.1 153303 154226 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mfa:Mfla_0402 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(153303..154226) Acidovorax sp. JS42 4674572 YP_984469.1 CDS Ajs_0138 NC_008782.1 154298 154786 D PFAM: transmembrane pair domain protein; KEGG: bte:BTH_II1937 hypothetical protein; transmembrane pair domain-containing protein 154298..154786 Acidovorax sp. JS42 4674528 YP_984470.1 CDS Ajs_0139 NC_008782.1 154831 155757 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bam:Bamb_5949 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(154831..155757) Acidovorax sp. JS42 4674498 YP_984471.1 CDS Ajs_0140 NC_008782.1 155906 157108 D KEGG: reu:Reut_B4400 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; muconate and chloromuconate cycloisomerases 155906..157108 Acidovorax sp. JS42 4674438 YP_984472.1 CDS Ajs_0141 NC_008782.1 157137 157433 D PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase; muconolactone delta-isomerase 157137..157433 Acidovorax sp. JS42 4674368 YP_984473.1 CDS Ajs_0142 NC_008782.1 157479 158402 D PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase; intradiol ring-cleavage dioxygenase 157479..158402 Acidovorax sp. JS42 4674315 YP_984474.1 CDS Ajs_0143 NC_008782.1 158429 159421 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065; hypothetical protein 158429..159421 Acidovorax sp. JS42 4674266 YP_984475.1 CDS Ajs_0144 NC_008782.1 159508 160920 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(159508..160920) Acidovorax sp. JS42 4674242 YP_984476.1 CDS Ajs_0145 NC_008782.1 160964 161578 R KEGG: eba:ebA1198 iron-sulfur subunit of cytochrome bc1; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(160964..161578) Acidovorax sp. JS42 4674230 YP_984477.1 CDS Ajs_0146 NC_008782.1 161755 163134 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_B0676 sigma54 specific transcriptional regulator with PAS sensor, fis family; sigma-54 dependent trancsriptional regulator 161755..163134 Acidovorax sp. JS42 4674197 YP_984478.1 CDS Ajs_0147 NC_008782.1 163503 166241 D KEGG: rfr:Rfer_0466 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase 163503..166241 Acidovorax sp. JS42 4673292 YP_984479.1 CDS Ajs_0148 NC_008782.1 166277 167878 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rme:Rmet_3815 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein 166277..167878 Acidovorax sp. JS42 4673238 YP_984480.1 CDS Ajs_0149 NC_008782.1 167912 168484 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: reu:Reut_B3941 twin-arginine translocation pathway signal; hypothetical protein 167912..168484 Acidovorax sp. JS42 4673230 YP_984481.1 CDS aroK NC_008782.1 168554 169090 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(168554..169090) Acidovorax sp. JS42 4672684 YP_984482.1 CDS Ajs_0151 NC_008782.1 169220 170137 D PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN; ribonuclease BN 169220..170137 Acidovorax sp. JS42 4672671 YP_984483.1 CDS Ajs_0152 NC_008782.1 170221 171105 D PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_0175 17 kDa surface antigen; 17 kDa surface antigen 170221..171105 Acidovorax sp. JS42 4672572 YP_984484.1 CDS Ajs_0153 NC_008782.1 171275 172048 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0084 ferredoxin--NADP(+) reductase; ferredoxin--NADP(+) reductase complement(171275..172048) Acidovorax sp. JS42 4671964 YP_984485.1 CDS Ajs_0154 NC_008782.1 172308 173495 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4064 extracellular ligand-binding receptor; extracellular ligand-binding receptor 172308..173495 Acidovorax sp. JS42 4671426 YP_984486.1 CDS Ajs_0155 NC_008782.1 173568 175535 D PFAM: inner-membrane translocator; KEGG: pol:Bpro_4063 inner-membrane translocator; inner-membrane translocator 173568..175535 Acidovorax sp. JS42 4671351 YP_984487.1 CDS Ajs_0156 NC_008782.1 175532 176290 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4062 ABC transporter related; ABC transporter-like protein 175532..176290 Acidovorax sp. JS42 4671296 YP_984488.1 CDS Ajs_0157 NC_008782.1 176287 177066 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4061 ABC transporter related; ABC transporter-like protein 176287..177066 Acidovorax sp. JS42 4671217 YP_984489.1 CDS Ajs_0158 NC_008782.1 177097 178014 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0910 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(177097..178014) Acidovorax sp. JS42 4670610 YP_984490.1 CDS Ajs_0159 NC_008782.1 178123 178932 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc1730 probable dehydrogenase/reductase oxidoreductase protein; short-chain dehydrogenase/reductase SDR 178123..178932 Acidovorax sp. JS42 4670633 YP_984491.1 CDS Ajs_0160 NC_008782.1 179061 180800 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rme:Rmet_5612 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(179061..180800) Acidovorax sp. JS42 4670638 YP_984492.1 CDS Ajs_0161 NC_008782.1 180846 182384 R KEGG: rfr:Rfer_0471 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(180846..182384) Acidovorax sp. JS42 4670642 YP_984493.1 CDS Ajs_0162 NC_008782.1 182604 183335 D KEGG: pol:Bpro_0182 hypothetical protein; hypothetical protein 182604..183335 Acidovorax sp. JS42 4670658 YP_984494.1 CDS Ajs_0163 NC_008782.1 183356 183694 D PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_0472 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 183356..183694 Acidovorax sp. JS42 4670671 YP_984495.1 CDS Ajs_0164 NC_008782.1 183741 185168 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rfr:Rfer_0473 ammonium transporter; ammonium transporter 183741..185168 Acidovorax sp. JS42 4670677 YP_984496.1 CDS Ajs_0165 NC_008782.1 185308 186258 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rfr:Rfer_0479 senescence marker protein-30 (SMP-30); gluconolactonase 185308..186258 Acidovorax sp. JS42 4670681 YP_984497.1 CDS Ajs_0166 NC_008782.1 186362 187471 D PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 186362..187471 Acidovorax sp. JS42 4670696 YP_984498.1 CDS Ajs_0167 NC_008782.1 187474 188271 D PFAM: protein of unknown function DUF1275; KEGG: rso:RS00757 probable transmembrane protein; hypothetical protein 187474..188271 Acidovorax sp. JS42 4670697 YP_984499.1 CDS glcF NC_008782.1 188297 189535 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region; glycolate oxidase iron-sulfur subunit 188297..189535 Acidovorax sp. JS42 4670738 YP_984500.1 CDS Ajs_0169 NC_008782.1 189597 190466 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein; ProQ activator of osmoprotectant transporter ProP 189597..190466 Acidovorax sp. JS42 4670748 YP_984501.1 CDS Ajs_0170 NC_008782.1 190545 190955 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A4004 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 190545..190955 Acidovorax sp. JS42 4670776 YP_984502.1 CDS Ajs_0171 NC_008782.1 191048 191518 D PFAM: transcription activator, effector binding; KEGG: pfl:PFL_3410 hypothetical protein; transcription activator 191048..191518 Acidovorax sp. JS42 4670789 YP_984503.1 CDS Ajs_0172 NC_008782.1 191596 192324 D PFAM: Helix-turn-helix, type 11 domain protein; KEGG: rso:RSc2673 putative repressor transcription regulator protein; helix-turn-helix, type 11 domain-containing protein 191596..192324 Acidovorax sp. JS42 4670799 YP_984504.1 CDS Ajs_0173 NC_008782.1 192555 193040 R PFAM: glutathione peroxidase; KEGG: rfr:Rfer_0484 glutathione peroxidase; glutathione peroxidase complement(192555..193040) Acidovorax sp. JS42 4670817 YP_984505.1 CDS Ajs_0174 NC_008782.1 193037 193978 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_0486 protein of unknown function DUF6, transmembrane; hypothetical protein complement(193037..193978) Acidovorax sp. JS42 4670856 YP_984506.1 CDS Ajs_0175 NC_008782.1 194129 195406 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1; lysophospholipid transporter LplT complement(194129..195406) Acidovorax sp. JS42 4670874 YP_984507.1 CDS Ajs_0176 NC_008782.1 195547 196644 D KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 195547..196644 Acidovorax sp. JS42 4670888 YP_984508.1 CDS Ajs_0177 NC_008782.1 196653 197204 D KEGG: bma:BMAA0623 hypothetical protein; hypothetical protein 196653..197204 Acidovorax sp. JS42 4670900 YP_984509.1 CDS Ajs_0178 NC_008782.1 197107 197721 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sme:SMc00036 putative glutathione S-transferase protein; glutathione S-transferase domain-containing protein complement(197107..197721) Acidovorax sp. JS42 4670919 YP_984510.1 CDS Ajs_0179 NC_008782.1 197869 198051 R hypothetical protein complement(197869..198051) Acidovorax sp. JS42 4670931 YP_984511.1 CDS Ajs_0180 NC_008782.1 198161 199543 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 198161..199543 Acidovorax sp. JS42 4670952 YP_984512.1 CDS Ajs_0181 NC_008782.1 199613 200053 D KEGG: pol:Bpro_0202 hypothetical protein; hypothetical protein 199613..200053 Acidovorax sp. JS42 4670955 YP_984513.1 CDS Ajs_0182 NC_008782.1 200100 201038 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 200100..201038 Acidovorax sp. JS42 4670962 YP_984514.1 CDS Ajs_0183 NC_008782.1 201043 201249 D KEGG: rfr:Rfer_0507 hypothetical protein; hypothetical protein 201043..201249 Acidovorax sp. JS42 4670980 YP_984515.1 CDS Ajs_0184 NC_008782.1 201358 202665 D PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein; O-antigen polymerase 201358..202665 Acidovorax sp. JS42 4670986 YP_984516.1 CDS Ajs_0185 NC_008782.1 202674 203831 D PFAM: glycosyl transferase, group 1; KEGG: sth:STH1101 glycosyl transferase; group 1 glycosyl transferase 202674..203831 Acidovorax sp. JS42 4670999 YP_984517.1 CDS Ajs_0186 NC_008782.1 203828 204874 D PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5093 glycosyl transferase; glycosyl transferase family protein 203828..204874 Acidovorax sp. JS42 4671013 YP_984518.1 CDS Ajs_0187 NC_008782.1 204871 205848 D KEGG: mmr:Mmar10_2764 hypothetical protein; hypothetical protein 204871..205848 Acidovorax sp. JS42 4671018 YP_984519.1 CDS Ajs_0188 NC_008782.1 205909 206973 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bcn:Bcen_2830 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(205909..206973) Acidovorax sp. JS42 4671032 YP_984520.1 CDS Ajs_0189 NC_008782.1 206978 207880 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pae:PA4203 probable transcriptional regulator; LysR family transcriptional regulator complement(206978..207880) Acidovorax sp. JS42 4671046 YP_984521.1 CDS Ajs_0190 NC_008782.1 207960 209228 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228; hypothetical protein 207960..209228 Acidovorax sp. JS42 4671079 YP_984522.1 CDS Ajs_0191 NC_008782.1 209236 209964 R PFAM: MOSC domain containing protein; KEGG: pae:PA2229 hypothetical protein; MOSC domain-containing protein complement(209236..209964) Acidovorax sp. JS42 4671123 YP_984523.1 CDS Ajs_0192 NC_008782.1 209961 210524 R KEGG: bbr:BB2475 hypothetical protein; hypothetical protein complement(209961..210524) Acidovorax sp. JS42 4674170 YP_984524.1 CDS Ajs_0193 NC_008782.1 210609 211889 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0509 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(210609..211889) Acidovorax sp. JS42 4671314 YP_984525.1 CDS Ajs_0194 NC_008782.1 211864 212619 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0510 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(211864..212619) Acidovorax sp. JS42 4671864 YP_984526.1 CDS Ajs_0195 NC_008782.1 212784 213425 D KEGG: cte:CT1159 type III restriction system methylase; type III restriction system methylase 212784..213425 Acidovorax sp. JS42 4671883 YP_984527.1 CDS dinD NC_008782.1 213422 214288 D KEGG: cch:Cag_1524 DNA-damage-inducible protein D; DNA-damage-inducible protein D 213422..214288 Acidovorax sp. JS42 4671516 YP_984528.1 CDS Ajs_0197 NC_008782.1 214296 215984 D PFAM: Eco57I restriction endonuclease; KEGG: cte:CT1160 type III restriction system endonuclease, putative; Eco57I restriction endonuclease 214296..215984 Acidovorax sp. JS42 4671536 YP_984529.1 CDS Ajs_0198 NC_008782.1 215965 218511 D KEGG: dge:Dgeo_0923 type III restriction system endonuclease, putative; type III restriction system endonuclease 215965..218511 Acidovorax sp. JS42 4671555 YP_984530.1 CDS Ajs_0199 NC_008782.1 218549 219892 R PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0516 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(218549..219892) Acidovorax sp. JS42 4671556 YP_984531.1 CDS Ajs_0200 NC_008782.1 219954 220655 D PFAM: Cupin 2, conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: pol:Bpro_0312 transcriptional regulator, AraC family; AraC family transcriptional regulator 219954..220655 Acidovorax sp. JS42 4671561 YP_984532.1 CDS Ajs_0201 NC_008782.1 220754 221659 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_3308 possible transporter, DME family, DMT superfamily; hypothetical protein 220754..221659 Acidovorax sp. JS42 4671576 YP_984533.1 CDS Ajs_0202 NC_008782.1 221756 222103 D KEGG: reu:Reut_A2446 probable signal peptide protein; hypothetical protein 221756..222103 Acidovorax sp. JS42 4671591 YP_984534.1 CDS Ajs_0203 NC_008782.1 222189 223064 D PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p; peptidase M48, Ste24p 222189..223064 Acidovorax sp. JS42 4671596 YP_984535.1 CDS Ajs_0204 NC_008782.1 223101 223889 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bur:Bcep18194_B2973 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(223101..223889) Acidovorax sp. JS42 4671193 YP_984536.1 CDS Ajs_0205 NC_008782.1 223914 225614 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: bur:Bcep18194_B2972 sigma54 specific transcriptional regulator with PAS sensor, fis family; sigma-54 dependent trancsriptional regulator complement(223914..225614) Acidovorax sp. JS42 4671621 YP_984537.1 CDS Ajs_0206 NC_008782.1 225908 226123 D PFAM: Phenol hydroxylase subunit; KEGG: dar:Daro_3797 phenol hydroxylase subunit; phenol hydroxylase subunit 225908..226123 Acidovorax sp. JS42 4671637 YP_984538.1 CDS Ajs_0207 NC_008782.1 226170 227165 D PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase; methane/phenol/toluene hydroxylase 226170..227165 Acidovorax sp. JS42 4671642 YP_984539.1 CDS Ajs_0208 NC_008782.1 227191 227460 D PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM 227191..227460 Acidovorax sp. JS42 4671653 YP_984540.1 CDS Ajs_0209 NC_008782.1 227485 229029 D PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS; methane/phenol/toluene hydroxylase 227485..229029 Acidovorax sp. JS42 4671661 YP_984541.1 CDS Ajs_0210 NC_008782.1 229026 229382 D PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1327 phenol hydroxylase conserved region; phenol hydroxylase region 229026..229382 Acidovorax sp. JS42 4671668 YP_984542.1 CDS Ajs_0211 NC_008782.1 229390 230451 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: reu:Reut_B5685 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; FAD/NAD(P)-binding oxidoreductase subunit 229390..230451 Acidovorax sp. JS42 4671687 YP_984543.1 CDS Ajs_0212 NC_008782.1 230438 231358 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(230438..231358) Acidovorax sp. JS42 4671691 YP_984544.1 CDS Ajs_0213 NC_008782.1 231485 231856 D PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin; ferredoxin 231485..231856 Acidovorax sp. JS42 4671701 YP_984545.1 CDS Ajs_0214 NC_008782.1 231878 232822 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase; catechol 2,3-dioxygenase 231878..232822 Acidovorax sp. JS42 4671718 YP_984546.1 CDS Ajs_0216 NC_008782.1 233776 234681 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(233776..234681) Acidovorax sp. JS42 4671729 YP_984547.1 CDS Ajs_0217 NC_008782.1 234952 235287 D PFAM: ferredoxin; KEGG: dar:Daro_3791 ferredoxin; ferredoxin 234952..235287 Acidovorax sp. JS42 4671741 YP_984548.1 CDS Ajs_0218 NC_008782.1 235310 236221 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dar:Daro_3789 glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase 235310..236221 Acidovorax sp. JS42 4671751 YP_984549.1 CDS Ajs_0219 NC_008782.1 236236 236667 D PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 protein of unknown function DUF336; hypothetical protein 236236..236667 Acidovorax sp. JS42 4671756 YP_984550.1 CDS Ajs_0220 NC_008782.1 236730 238190 D PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase; betaine-aldehyde dehydrogenase 236730..238190 Acidovorax sp. JS42 4671771 YP_984551.1 CDS Ajs_0221 NC_008782.1 238264 239124 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1331 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 238264..239124 Acidovorax sp. JS42 4671774 YP_984552.1 CDS Ajs_0222 NC_008782.1 239166 239954 D PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_3785 hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 239166..239954 Acidovorax sp. JS42 4671812 YP_984553.1 CDS Ajs_0223 NC_008782.1 239969 240877 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 239969..240877 Acidovorax sp. JS42 4671510 YP_984554.1 CDS Ajs_0224 NC_008782.1 240899 241927 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 240899..241927 Acidovorax sp. JS42 4674386 YP_984555.1 CDS Ajs_0225 NC_008782.1 241942 242730 D PFAM: Hydratase/decarboxylase; KEGG: rme:Rmet_1318 hydratase/decarboxylase; 4-oxalocrotonate decarboxylase 241942..242730 Acidovorax sp. JS42 4671876 YP_984556.1 CDS Ajs_0226 NC_008782.1 242785 243768 D PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1999 hypothetical protein; hypothetical protein 242785..243768 Acidovorax sp. JS42 4672498 YP_984557.1 CDS Ajs_0227 NC_008782.1 243788 243979 D TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 243788..243979 Acidovorax sp. JS42 4672579 YP_984558.1 CDS Ajs_0228 NC_008782.1 244055 244693 R PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_0167 beta-lactamase-like; beta-lactamase domain-containing protein complement(244055..244693) Acidovorax sp. JS42 4672059 YP_984559.1 CDS Ajs_0229 NC_008782.1 244796 245494 R PFAM: regulatory protein GntR, HTH; KEGG: reu:Reut_B4629 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(244796..245494) Acidovorax sp. JS42 4672069 YP_984560.1 CDS Ajs_0230 NC_008782.1 245619 246818 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_35970 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 245619..246818 Acidovorax sp. JS42 4672088 YP_984561.1 CDS Ajs_0231 NC_008782.1 246821 247597 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ppu:PP_2794 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 246821..247597 Acidovorax sp. JS42 4672092 YP_984562.1 CDS Ajs_0232 NC_008782.1 247594 248634 D PFAM: aminoglycoside phosphotransferase; KEGG: reu:Reut_A1007 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 247594..248634 Acidovorax sp. JS42 4672100 YP_984563.1 CDS Ajs_0233 NC_008782.1 248739 249542 R KEGG: rfr:Rfer_3929 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(248739..249542) Acidovorax sp. JS42 4672106 YP_984564.1 CDS pyrE NC_008782.1 249553 250263 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 249553..250263 Acidovorax sp. JS42 4672110 YP_984565.1 CDS Ajs_0235 NC_008782.1 250296 251012 D KEGG: pol:Bpro_0218 hypothetical protein; hypothetical protein 250296..251012 Acidovorax sp. JS42 4671843 YP_984566.1 CDS Ajs_0236 NC_008782.1 251086 252543 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: rfr:Rfer_3926 glutamyl-tRNA(Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B complement(251086..252543) Acidovorax sp. JS42 4672138 YP_984567.1 CDS gatA NC_008782.1 252546 254048 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(252546..254048) Acidovorax sp. JS42 4672151 YP_984568.1 CDS Ajs_0238 NC_008782.1 254059 254427 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: rfr:Rfer_3924 glutamyl-tRNA(Gln) amidotransferase, C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C complement(254059..254427) Acidovorax sp. JS42 4672156 YP_984569.1 CDS Ajs_0239 NC_008782.1 254564 255607 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 254564..255607 Acidovorax sp. JS42 4672163 YP_984570.1 CDS Ajs_0240 NC_008782.1 255637 256554 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 255637..256554 Acidovorax sp. JS42 4672170 YP_984571.1 CDS Ajs_0241 NC_008782.1 256551 257072 D KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein; putative rod shape-determining MreD transmembrane protein 256551..257072 Acidovorax sp. JS42 4672176 YP_984572.1 CDS Ajs_0242 NC_008782.1 257100 259040 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 257100..259040 Acidovorax sp. JS42 4672181 YP_984573.1 CDS Ajs_0243 NC_008782.1 259057 259956 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR2393 hypothetical protein; hypothetical protein complement(259057..259956) Acidovorax sp. JS42 4672193 YP_984574.1 CDS Ajs_0244 NC_008782.1 260089 260841 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0403 ABC transporter related; ABC transporter-like protein complement(260089..260841) Acidovorax sp. JS42 4672201 YP_984575.1 CDS Ajs_0245 NC_008782.1 260838 261620 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit complement(260838..261620) Acidovorax sp. JS42 4672211 YP_984576.1 CDS Ajs_0246 NC_008782.1 261660 262421 R PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_0401 extracellular solute-binding protein, family 3; extracellular solute-binding protein complement(261660..262421) Acidovorax sp. JS42 4672216 YP_984577.1 CDS Ajs_0247 NC_008782.1 262587 263507 R TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_3884 arginase; arginase complement(262587..263507) Acidovorax sp. JS42 4672223 YP_984578.1 CDS Ajs_0248 NC_008782.1 263545 264303 R PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_3919 protein of unknown function DUF81; hypothetical protein complement(263545..264303) Acidovorax sp. JS42 4672249 YP_984579.1 CDS Ajs_0249 NC_008782.1 264603 266312 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_3918 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(264603..266312) Acidovorax sp. JS42 4672265 YP_984580.1 CDS Ajs_0250 NC_008782.1 266634 267752 D PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140; hypothetical protein 266634..267752 Acidovorax sp. JS42 4672278 YP_984581.1 CDS Ajs_0251 NC_008782.1 267755 268597 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related; ABC transporter-like protein 267755..268597 Acidovorax sp. JS42 4672287 YP_984582.1 CDS Ajs_0252 NC_008782.1 268597 269574 D PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related; hypothetical protein 268597..269574 Acidovorax sp. JS42 4672300 YP_984583.1 CDS Ajs_0253 NC_008782.1 269592 270269 D KEGG: pol:Bpro_0233 putative lipoprotein; putative lipoprotein 269592..270269 Acidovorax sp. JS42 4672308 YP_984584.1 CDS Ajs_0254 NC_008782.1 270514 270729 D PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like; CsbD family protein 270514..270729 Acidovorax sp. JS42 4672315 YP_984585.1 CDS Ajs_0255 NC_008782.1 270806 271384 D KEGG: pol:Bpro_1153 hypothetical protein; hypothetical protein 270806..271384 Acidovorax sp. JS42 4672322 YP_984586.1 CDS Ajs_0256 NC_008782.1 271533 272039 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_A0820 hypothetical protein; hemerythrin-like metal-binding protein 271533..272039 Acidovorax sp. JS42 4672334 YP_984587.1 CDS Ajs_0257 NC_008782.1 272219 273151 D KEGG: bxe:Bxe_B2063 putative diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 272219..273151 Acidovorax sp. JS42 4672336 YP_984588.1 CDS Ajs_0258 NC_008782.1 273155 273793 R PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like proteins complement(273155..273793) Acidovorax sp. JS42 4672349 YP_984589.1 CDS Ajs_0259 NC_008782.1 273793 274539 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_0239 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(273793..274539) Acidovorax sp. JS42 4672352 YP_984590.1 CDS Ajs_0260 NC_008782.1 274647 275336 D PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase; carboxymethylenebutenolidase 274647..275336 Acidovorax sp. JS42 4672362 YP_984591.1 CDS Ajs_0261 NC_008782.1 275424 276992 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily; EmrB/QacA family drug resistance transporter complement(275424..276992) Acidovorax sp. JS42 4672368 YP_984592.1 CDS Ajs_0262 NC_008782.1 277003 278220 R PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD; secretion protein HlyD family protein complement(277003..278220) Acidovorax sp. JS42 4672385 YP_984593.1 CDS Ajs_0263 NC_008782.1 278249 279802 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(278249..279802) Acidovorax sp. JS42 4672447 YP_984594.1 CDS Ajs_0264 NC_008782.1 279861 280376 R PFAM: regulatory protein, MarR; KEGG: rfr:Rfer_1513 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(279861..280376) Acidovorax sp. JS42 4672580 YP_984595.1 CDS Ajs_0265 NC_008782.1 280480 281685 R PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like; Mg2+ transporter protein, CorA family protein complement(280480..281685) Acidovorax sp. JS42 4673204 YP_984596.1 CDS Ajs_0266 NC_008782.1 281725 282732 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(281725..282732) Acidovorax sp. JS42 4672745 YP_984597.1 CDS Ajs_0267 NC_008782.1 282893 283606 D PFAM: biotin/lipoate A/B protein ligase; KEGG: rfr:Rfer_3968 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 282893..283606 Acidovorax sp. JS42 4672621 YP_984598.1 CDS Ajs_0268 NC_008782.1 283816 284244 D PFAM: conserved hypothetical protein 701; KEGG: rfr:Rfer_3804 conserved hypothetical protein 701; hypothetical protein 283816..284244 Acidovorax sp. JS42 4672761 YP_984599.1 CDS Ajs_0269 NC_008782.1 284342 285439 D PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein; VanZ family protein 284342..285439 Acidovorax sp. JS42 4672777 YP_984600.1 CDS Ajs_0270 NC_008782.1 285449 285790 D KEGG: pol:Bpro_0248 ferredoxin-like; ferredoxin-like protein 285449..285790 Acidovorax sp. JS42 4672795 YP_984601.1 CDS Ajs_0271 NC_008782.1 285862 286521 D KEGG: pol:Bpro_0249 putative transmembrane protein; hypothetical protein 285862..286521 Acidovorax sp. JS42 4672529 YP_984602.1 CDS Ajs_0272 NC_008782.1 286601 287764 D PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rfr:Rfer_3801 serine-type D-Ala-D-Ala carboxypeptidase; penicillin-binding protein 6 286601..287764 Acidovorax sp. JS42 4672832 YP_984603.1 CDS rpsL NC_008782.1 287915 288292 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 287915..288292 Acidovorax sp. JS42 4672835 YP_984604.1 CDS Ajs_0274 NC_008782.1 288463 288936 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 288463..288936 Acidovorax sp. JS42 4672837 YP_984605.1 CDS Ajs_0275 NC_008782.1 289094 291202 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 289094..291202 Acidovorax sp. JS42 4672842 YP_984606.1 CDS Ajs_0276 NC_008782.1 291387 292577 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 291387..292577 Acidovorax sp. JS42 4672856 YP_984607.1 CDS rpsJ NC_008782.1 292605 292916 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 292605..292916 Acidovorax sp. JS42 4672870 YP_984608.1 CDS rplC NC_008782.1 293167 293841 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 293167..293841 Acidovorax sp. JS42 4672880 YP_984609.1 CDS rplD NC_008782.1 293841 294461 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 293841..294461 Acidovorax sp. JS42 4672896 YP_984610.1 CDS rplW NC_008782.1 294458 294772 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 294458..294772 Acidovorax sp. JS42 4672923 YP_984611.1 CDS rplB NC_008782.1 294776 295600 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 294776..295600 Acidovorax sp. JS42 4672928 YP_984612.1 CDS rpsS NC_008782.1 295611 295889 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 295611..295889 Acidovorax sp. JS42 4672932 YP_984613.1 CDS rplV NC_008782.1 295899 296231 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 295899..296231 Acidovorax sp. JS42 4672964 YP_984614.1 CDS rpsC NC_008782.1 296248 297114 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 296248..297114 Acidovorax sp. JS42 4672977 YP_984615.1 CDS rplP NC_008782.1 297117 297533 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 297117..297533 Acidovorax sp. JS42 4672985 YP_984616.1 CDS Ajs_0286 NC_008782.1 297545 297742 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 297545..297742 Acidovorax sp. JS42 4673000 YP_984617.1 CDS rpsQ NC_008782.1 297752 298021 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 297752..298021 Acidovorax sp. JS42 4673006 YP_984618.1 CDS Ajs_0288 NC_008782.1 298085 298642 D PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3785 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin domain-containing protein 298085..298642 Acidovorax sp. JS42 4673027 YP_984619.1 CDS Ajs_0289 NC_008782.1 298786 299301 R PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3784 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(298786..299301) Acidovorax sp. JS42 4673043 YP_984620.1 CDS Ajs_0290 NC_008782.1 299343 300011 R PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561; cytochrome B561 complement(299343..300011) Acidovorax sp. JS42 4673120 YP_984621.1 CDS Ajs_0291 NC_008782.1 300192 300653 D PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II; class II cytochrome c 300192..300653 Acidovorax sp. JS42 4673107 YP_984622.1 CDS Ajs_0292 NC_008782.1 300749 301252 R PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein; redoxin domain-containing protein complement(300749..301252) Acidovorax sp. JS42 4673852 YP_984623.1 CDS Ajs_0293 NC_008782.1 301505 302068 D KEGG: pol:Bpro_0295 hypothetical protein; hypothetical protein 301505..302068 Acidovorax sp. JS42 4673975 YP_984624.1 CDS Ajs_0294 NC_008782.1 302065 303303 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1; major facilitator superfamily transporter 302065..303303 Acidovorax sp. JS42 4673333 YP_984625.1 CDS Ajs_0295 NC_008782.1 303300 303749 D PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA 303300..303749 Acidovorax sp. JS42 4673347 YP_984626.1 CDS Ajs_0296 NC_008782.1 303718 303987 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 303718..303987 Acidovorax sp. JS42 4673353 YP_984627.1 CDS Ajs_0297 NC_008782.1 304006 305775 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate--protein phosphotransferase 304006..305775 Acidovorax sp. JS42 4673360 YP_984628.1 CDS Ajs_0298 NC_008782.1 305847 306827 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(305847..306827) Acidovorax sp. JS42 4673366 YP_984629.1 CDS Ajs_0299 NC_008782.1 306845 307525 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(306845..307525) Acidovorax sp. JS42 4673152 YP_984630.1 CDS Ajs_0300 NC_008782.1 307549 307845 R PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493; hypothetical protein complement(307549..307845) Acidovorax sp. JS42 4673383 YP_984631.1 CDS Ajs_0301 NC_008782.1 308086 308574 D KEGG: rfr:Rfer_0113 putative ATP synthase protein I; putative ATP synthase protein I 308086..308574 Acidovorax sp. JS42 4673387 YP_984632.1 CDS Ajs_0302 NC_008782.1 308597 309460 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 308597..309460 Acidovorax sp. JS42 4673390 YP_984633.1 CDS Ajs_0303 NC_008782.1 309512 309760 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 309512..309760 Acidovorax sp. JS42 4672715 YP_984634.1 CDS Ajs_0304 NC_008782.1 309796 310266 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 309796..310266 Acidovorax sp. JS42 4673421 YP_984635.1 CDS Ajs_0305 NC_008782.1 310278 310820 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 310278..310820 Acidovorax sp. JS42 4673434 YP_984636.1 CDS Ajs_0306 NC_008782.1 310867 312426 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 310867..312426 Acidovorax sp. JS42 4673441 YP_984637.1 CDS Ajs_0307 NC_008782.1 312445 313311 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 312445..313311 Acidovorax sp. JS42 4673460 YP_984638.1 CDS Ajs_0308 NC_008782.1 313354 314760 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 313354..314760 Acidovorax sp. JS42 4673473 YP_984639.1 CDS atpC NC_008782.1 314836 315252 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 314836..315252 Acidovorax sp. JS42 4673492 YP_984640.1 CDS Ajs_0310 NC_008782.1 315383 316483 D KEGG: ppu:PP_1106 putative mRNA 3-end processing factor; putative mRNA 3-end processing factor 315383..316483 Acidovorax sp. JS42 4673522 YP_984641.1 CDS Ajs_0311 NC_008782.1 316483 318162 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 316483..318162 Acidovorax sp. JS42 4673526 YP_984642.1 CDS Ajs_0312 NC_008782.1 318254 321166 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: reu:Reut_A1853 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase domain-containing protein 318254..321166 Acidovorax sp. JS42 4673529 YP_984643.1 CDS Ajs_0313 NC_008782.1 321170 321844 D PFAM: metallophosphoesterase; KEGG: reu:Reut_A1852 hypothetical protein; metallophosphoesterase 321170..321844 Acidovorax sp. JS42 4673537 YP_984644.1 CDS Ajs_0314 NC_008782.1 321893 322444 R PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477; hypothetical protein complement(321893..322444) Acidovorax sp. JS42 4673550 YP_984645.1 CDS Ajs_0315 NC_008782.1 322470 323372 R PFAM: protein of unknown function DUF477; KEGG: rfr:Rfer_0103 protein of unknown function DUF477; hypothetical protein complement(322470..323372) Acidovorax sp. JS42 4673560 YP_984646.1 CDS Ajs_0316 NC_008782.1 323394 323999 R PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA; LemA family protein complement(323394..323999) Acidovorax sp. JS42 4673588 YP_984647.1 CDS Ajs_0317 NC_008782.1 324144 324593 D KEGG: pol:Bpro_0333 hypothetical protein; hypothetical protein 324144..324593 Acidovorax sp. JS42 4673593 YP_984648.1 CDS Ajs_0318 NC_008782.1 324666 325670 D KEGG: rpe:RPE_0805 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 324666..325670 Acidovorax sp. JS42 4673615 YP_984649.1 CDS Ajs_0319 NC_008782.1 325711 326250 D KEGG: rfr:Rfer_0100 hypothetical protein; hypothetical protein 325711..326250 Acidovorax sp. JS42 4673619 YP_984650.1 CDS Ajs_0320 NC_008782.1 326330 326872 R PFAM: cytochrome c, class I; KEGG: rfr:Rfer_0208 cytochrome c, class I; class I cytochrome c complement(326330..326872) Acidovorax sp. JS42 4673639 YP_984651.1 CDS Ajs_0321 NC_008782.1 326993 328435 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(326993..328435) Acidovorax sp. JS42 4673650 YP_984652.1 CDS Ajs_0323 NC_008782.1 331633 332934 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_2066 secretion protein HlyD; RND family efflux transporter MFP subunit complement(331633..332934) Acidovorax sp. JS42 4673660 YP_984653.1 CDS Ajs_0324 NC_008782.1 333098 333709 D PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family; TetR family transcriptional regulator 333098..333709 Acidovorax sp. JS42 4673674 YP_984654.1 CDS Ajs_0325 NC_008782.1 334076 334849 R PFAM: regulatory proteins, IclR; KEGG: mfa:Mfla_2558 transcriptional regulator, IclR family; regulatory proteins, IclR complement(334076..334849) Acidovorax sp. JS42 4673697 YP_984655.1 CDS Ajs_0326 NC_008782.1 335273 336499 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 335273..336499 Acidovorax sp. JS42 4673722 YP_984656.1 CDS Ajs_0327 NC_008782.1 336684 337814 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_2557 secretion protein HlyD; RND family efflux transporter MFP subunit 336684..337814 Acidovorax sp. JS42 4673730 YP_984657.1 CDS Ajs_0328 NC_008782.1 337825 340977 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pau:PA14_05540 RND multidrug efflux transporter MexB; hydrophobe/amphiphile efflux-1 (HAE1) family protein 337825..340977 Acidovorax sp. JS42 4673830 YP_984658.1 CDS Ajs_0329 NC_008782.1 340974 342392 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_2142 outer membrane efflux protein; RND efflux system outer membrane lipoprotein 340974..342392 Acidovorax sp. JS42 4673971 YP_984659.1 CDS Ajs_0330 NC_008782.1 342477 343154 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase 342477..343154 Acidovorax sp. JS42 4674011 YP_984660.1 CDS Ajs_0331 NC_008782.1 343428 343760 D KEGG: pol:Bpro_1739 hypothetical protein; hypothetical protein 343428..343760 Acidovorax sp. JS42 4674671 YP_984661.1 CDS Ajs_0332 NC_008782.1 343972 344433 D hypothetical protein 343972..344433 Acidovorax sp. JS42 4674559 YP_984662.1 CDS Ajs_0333 NC_008782.1 344497 344736 D PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mfa:Mfla_1441 alcohol dehydrogenase GroES-like protein; alcohol dehydrogenase 344497..344736 Acidovorax sp. JS42 4674436 YP_984663.1 CDS Ajs_0334 NC_008782.1 344886 345395 R KEGG: reu:Reut_B4919 putative outer membrane protein; putative outer membrane protein complement(344886..345395) Acidovorax sp. JS42 4674313 YP_984664.1 CDS Ajs_0335 NC_008782.1 345522 346289 R PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II; class-II glutamine amidotransferase complement(345522..346289) Acidovorax sp. JS42 4674231 YP_984665.1 CDS Ajs_0336 NC_008782.1 346323 346511 R 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase complement(346323..346511) Acidovorax sp. JS42 4674186 YP_984666.1 CDS Ajs_0337 NC_008782.1 346535 346771 R KEGG: psb:Psyr_3980 hypothetical protein; hypothetical protein complement(346535..346771) Acidovorax sp. JS42 4673712 YP_984667.1 CDS Ajs_0338 NC_008782.1 346878 349079 R catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G complement(346878..349079) Acidovorax sp. JS42 4673671 YP_984668.1 CDS Ajs_0339 NC_008782.1 349308 350246 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family; LysR family transcriptional regulator 349308..350246 Acidovorax sp. JS42 4673289 YP_984669.1 CDS Ajs_0340 NC_008782.1 350338 350922 D KEGG: xoo:XOO0695 hypothetical protein; hypothetical protein 350338..350922 Acidovorax sp. JS42 4673579 YP_984670.1 CDS Ajs_0341 NC_008782.1 350962 351417 D KEGG: reu:Reut_A0848 probable transmembrane protein; hypothetical protein 350962..351417 Acidovorax sp. JS42 4673552 YP_984671.1 CDS Ajs_0342 NC_008782.1 351518 351850 R PFAM: PsiF repeat protein; KEGG: pau:PA14_64460 putative phosphate starvation-inducible protein; PsiF repeat-containing protein complement(351518..351850) Acidovorax sp. JS42 4673517 YP_984672.1 CDS argS NC_008782.1 351946 353679 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 351946..353679 Acidovorax sp. JS42 4673493 YP_984673.1 CDS Ajs_0344 NC_008782.1 353692 354318 D PFAM: Sporulation domain protein; KEGG: rfr:Rfer_0774 sporulation related; sporulation domain-containing protein 353692..354318 Acidovorax sp. JS42 4673226 YP_984674.1 CDS Ajs_0345 NC_008782.1 354377 355027 D PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase; DSBA oxidoreductase 354377..355027 Acidovorax sp. JS42 4672708 YP_984675.1 CDS Ajs_0346 NC_008782.1 355177 355860 D PFAM: OstA family protein; KEGG: rfr:Rfer_0776 OstA-like protein; OstA family protein 355177..355860 Acidovorax sp. JS42 4673351 YP_984676.1 CDS Ajs_0347 NC_008782.1 355869 356636 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0777 ABC transporter related; ABC transporter-like protein 355869..356636 Acidovorax sp. JS42 4672987 YP_984677.1 CDS Ajs_0348 NC_008782.1 356689 358266 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rfr:Rfer_0778 sigma-54 (RpoN); RNA polymerase sigma-54 subunit RpoN 356689..358266 Acidovorax sp. JS42 4672662 YP_984678.1 CDS Ajs_0349 NC_008782.1 358270 358713 D KEGG: dar:Daro_1883 hypothetical protein; hypothetical protein 358270..358713 Acidovorax sp. JS42 4672868 YP_984679.1 CDS Ajs_0350 NC_008782.1 358710 360032 D PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase; putative RNA methylase 358710..360032 Acidovorax sp. JS42 4672667 YP_984680.1 CDS Ajs_0351 NC_008782.1 360022 360507 D KEGG: pol:Bpro_4483 protein of unknown function DUF132; hypothetical protein 360022..360507 Acidovorax sp. JS42 4672028 YP_984681.1 CDS Ajs_0352 NC_008782.1 360495 361796 D PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bbr:BB1554 putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 360495..361796 Acidovorax sp. JS42 4672025 YP_984682.1 CDS Ajs_0353 NC_008782.1 362277 363107 D PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif; SecC motif-containing protein 362277..363107 Acidovorax sp. JS42 4672331 YP_984683.1 CDS Ajs_0354 NC_008782.1 363323 363862 R PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like; CinA domain-containing protein complement(363323..363862) Acidovorax sp. JS42 4672004 YP_984684.1 CDS Ajs_0355 NC_008782.1 363868 364398 R PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase complement(363868..364398) Acidovorax sp. JS42 4672184 YP_984685.1 CDS Ajs_0356 NC_008782.1 364462 365436 R KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(364462..365436) Acidovorax sp. JS42 4672137 YP_984686.1 CDS Ajs_0357 NC_008782.1 365452 366576 R ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity; carboxylate-amine ligase complement(365452..366576) Acidovorax sp. JS42 4672060 YP_984687.1 CDS Ajs_0358 NC_008782.1 366566 367831 R PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(366566..367831) Acidovorax sp. JS42 4671744 YP_984688.1 CDS Ajs_0359 NC_008782.1 368013 369995 R KEGG: rfr:Rfer_0530 putative site-specific recombinase transmembrane protein; putative site-specific recombinase transmembrane protein complement(368013..369995) Acidovorax sp. JS42 4671681 YP_984689.1 CDS apaG NC_008782.1 369992 370405 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(369992..370405) Acidovorax sp. JS42 4671447 YP_984690.1 CDS Ajs_0361 NC_008782.1 370517 371197 D PFAM: ribulose-phosphate 3-epimerase; KEGG: rfr:Rfer_0532 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase 370517..371197 Acidovorax sp. JS42 4671598 YP_984691.1 CDS Ajs_0362 NC_008782.1 371238 371603 R KEGG: rfr:Rfer_1966 hypothetical protein; hypothetical protein complement(371238..371603) Acidovorax sp. JS42 4671408 YP_984692.1 CDS Ajs_0363 NC_008782.1 371770 372555 D KEGG: rfr:Rfer_3611 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 371770..372555 Acidovorax sp. JS42 4671582 YP_984693.1 CDS Ajs_0364 NC_008782.1 372815 374557 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2225 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(372815..374557) Acidovorax sp. JS42 4671549 YP_984694.1 CDS Ajs_0365 NC_008782.1 374679 375281 R KEGG: pol:Bpro_4459 putative lipoprotein transmembrane; putative lipoprotein transmembrane complement(374679..375281) Acidovorax sp. JS42 4671547 YP_984695.1 CDS Ajs_0366 NC_008782.1 375578 377137 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 375578..377137 Acidovorax sp. JS42 4671520 YP_984696.1 CDS Ajs_0367 NC_008782.1 377134 377478 D PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase; chorismate mutase 377134..377478 Acidovorax sp. JS42 4671051 YP_984697.1 CDS Ajs_0368 NC_008782.1 377475 378047 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 377475..378047 Acidovorax sp. JS42 4670977 YP_984698.1 CDS trpD NC_008782.1 378145 379179 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 378145..379179 Acidovorax sp. JS42 4670960 YP_984699.1 CDS trpC NC_008782.1 379434 380234 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 379434..380234 Acidovorax sp. JS42 4670926 YP_984700.1 CDS Ajs_0371 NC_008782.1 380373 383045 D KEGG: rfr:Rfer_3606 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 380373..383045 Acidovorax sp. JS42 4670903 YP_984701.1 CDS Ajs_0372 NC_008782.1 383100 383813 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 383100..383813 Acidovorax sp. JS42 4670797 YP_984702.1 CDS Ajs_0373 NC_008782.1 383814 384701 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein; hypothetical protein complement(383814..384701) Acidovorax sp. JS42 4670729 YP_984703.1 CDS Ajs_0374 NC_008782.1 384698 385798 R TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: rfr:Rfer_0628 S-adenosylmethionine; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase complement(384698..385798) Acidovorax sp. JS42 4671197 YP_984704.1 CDS Ajs_0376 NC_008782.1 387162 389333 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 387162..389333 Acidovorax sp. JS42 4671214 YP_984705.1 CDS Ajs_0377 NC_008782.1 389402 390367 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3681 transcriptional regulator, LysR family; LysR family transcriptional regulator 389402..390367 Acidovorax sp. JS42 4671224 YP_984706.1 CDS Ajs_0378 NC_008782.1 390445 390963 D PFAM: Ferritin, Dps family protein; KEGG: bbr:BB2935 putative DNA-binding protein; Ferritin, Dps family protein 390445..390963 Acidovorax sp. JS42 4671222 YP_984707.1 CDS Ajs_0379 NC_008782.1 390990 392528 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase; adenylate cyclase 390990..392528 Acidovorax sp. JS42 4671236 YP_984708.1 CDS Ajs_0380 NC_008782.1 392732 393604 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase; 4-hydroxybenzoate octaprenyltransferase 392732..393604 Acidovorax sp. JS42 4671191 YP_984709.1 CDS Ajs_0381 NC_008782.1 393659 394525 R KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(393659..394525) Acidovorax sp. JS42 4671249 YP_984710.1 CDS Ajs_0382 NC_008782.1 394655 396151 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase; glycerol kinase complement(394655..396151) Acidovorax sp. JS42 4671245 YP_984711.1 CDS Ajs_0383 NC_008782.1 396171 396935 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0477 transcriptional regulator, DeoR family; DeoR family transcriptional regulator complement(396171..396935) Acidovorax sp. JS42 4671297 YP_984712.1 CDS Ajs_0384 NC_008782.1 397171 398244 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0478 ABC transporter related; ABC transporter-like protein 397171..398244 Acidovorax sp. JS42 4671286 YP_984713.1 CDS Ajs_0385 NC_008782.1 398248 399321 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0479 ABC transporter related; ABC transporter-like protein 398248..399321 Acidovorax sp. JS42 4671309 YP_984714.1 CDS Ajs_0386 NC_008782.1 399470 400366 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3674 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 399470..400366 Acidovorax sp. JS42 4671329 YP_984715.1 CDS Ajs_0387 NC_008782.1 400359 401171 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0481 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 400359..401171 Acidovorax sp. JS42 4671334 YP_984716.1 CDS Ajs_0388 NC_008782.1 401184 401492 D KEGG: rfr:Rfer_3672 putative integral membrane protein; putative integral membrane protein 401184..401492 Acidovorax sp. JS42 4671337 YP_984717.1 CDS Ajs_0389 NC_008782.1 401667 403400 D PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0483 twin-arginine translocation pathway signal; extracellular solute-binding protein 401667..403400 Acidovorax sp. JS42 4671282 YP_984718.1 CDS Ajs_0390 NC_008782.1 403503 405101 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase; FAD dependent oxidoreductase 403503..405101 Acidovorax sp. JS42 4671261 YP_984719.1 CDS rplN NC_008782.1 405293 405661 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 405293..405661 Acidovorax sp. JS42 4671188 YP_984720.1 CDS rplX NC_008782.1 405672 405992 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 405672..405992 Acidovorax sp. JS42 4670613 YP_984721.1 CDS rplE NC_008782.1 406002 406541 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 406002..406541 Acidovorax sp. JS42 4670621 YP_984722.1 CDS rpsN NC_008782.1 406551 406856 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 406551..406856 Acidovorax sp. JS42 4670640 YP_984723.1 CDS rpsH NC_008782.1 406877 407272 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 406877..407272 Acidovorax sp. JS42 4670648 YP_984724.1 CDS rplF NC_008782.1 407297 407830 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 407297..407830 Acidovorax sp. JS42 4670675 YP_984725.1 CDS rplR NC_008782.1 407842 408207 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 407842..408207 Acidovorax sp. JS42 4670692 YP_984726.1 CDS rpsE NC_008782.1 408225 408746 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 408225..408746 Acidovorax sp. JS42 4670718 YP_984727.1 CDS rpmD NC_008782.1 408761 408943 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 408761..408943 Acidovorax sp. JS42 4670719 YP_984728.1 CDS rplO NC_008782.1 408954 409385 D late assembly protein; 50S ribosomal protein L15 408954..409385 Acidovorax sp. JS42 4670724 YP_984729.1 CDS secY NC_008782.1 409409 410728 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 409409..410728 Acidovorax sp. JS42 4670747 YP_984730.1 CDS rpmJ NC_008782.1 410873 410986 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 410873..410986 Acidovorax sp. JS42 4670759 YP_984731.1 CDS rpsM NC_008782.1 411010 411375 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 411010..411375 Acidovorax sp. JS42 4670775 YP_984732.1 CDS Ajs_0404 NC_008782.1 411393 411797 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 411393..411797 Acidovorax sp. JS42 4670798 YP_984733.1 CDS rpsD NC_008782.1 411886 412509 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 411886..412509 Acidovorax sp. JS42 4670802 YP_984734.1 CDS Ajs_0406 NC_008782.1 412621 413613 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 412621..413613 Acidovorax sp. JS42 4670827 YP_984735.1 CDS rplQ NC_008782.1 413703 414092 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 413703..414092 Acidovorax sp. JS42 4670841 YP_984736.1 CDS Ajs_0408 NC_008782.1 414342 415682 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: xcb:XC_2733 UDP-glucose dehydrogenase; UDP-glucose 6-dehydrogenase complement(414342..415682) Acidovorax sp. JS42 4670853 YP_984737.1 CDS Ajs_0409 NC_008782.1 415679 416689 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase complement(415679..416689) Acidovorax sp. JS42 4670865 YP_984738.1 CDS Ajs_0410 NC_008782.1 416686 418203 R KEGG: sme:SMc02383 hypothetical protein; glycosyltransferase complement(416686..418203) Acidovorax sp. JS42 4670882 YP_984739.1 CDS Ajs_0411 NC_008782.1 418307 419338 D PFAM: glycosyl transferase, family 2; KEGG: ana:alr3380 dolichol-phosphate mannosyltransferase; glycosyl transferase family protein 418307..419338 Acidovorax sp. JS42 4670890 YP_984740.1 CDS Ajs_0412 NC_008782.1 419335 420264 D KEGG: gvi:gll0941 hypothetical protein; hypothetical protein 419335..420264 Acidovorax sp. JS42 4670904 YP_984741.1 CDS Ajs_0413 NC_008782.1 420503 421441 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_3872 protein of unknown function UPF0011; uroporphyrin-III C/tetrapyrrole methyltransferase complement(420503..421441) Acidovorax sp. JS42 4670911 YP_984742.1 CDS Ajs_0414 NC_008782.1 421441 421839 D PFAM: protein of unknown function UPF0102; KEGG: rfr:Rfer_3873 protein of unknown function UPF0102; hypothetical protein 421441..421839 Acidovorax sp. JS42 4670954 YP_984743.1 CDS Ajs_0415 NC_008782.1 421898 422491 D KEGG: pol:Bpro_0392 phosphoheptose isomerase; phosphoheptose isomerase 421898..422491 Acidovorax sp. JS42 4671017 YP_984744.1 CDS Ajs_0416 NC_008782.1 422488 423162 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rfr:Rfer_3875 transport-associated; transport protein 422488..423162 Acidovorax sp. JS42 4671023 YP_984745.1 CDS Ajs_0417 NC_008782.1 423260 424189 R PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3876 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(423260..424189) Acidovorax sp. JS42 4671045 YP_984746.1 CDS Ajs_0418 NC_008782.1 424254 425390 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein; twitching motility protein complement(424254..425390) Acidovorax sp. JS42 4670565 YP_984747.1 CDS Ajs_0419 NC_008782.1 425437 426066 R PFAM: cyclic nucleotide-binding; KEGG: psp:PSPPH_1557 cyclic nucleotide-binding protein; cyclic nucleotide-binding protein complement(425437..426066) Acidovorax sp. JS42 4671129 YP_984748.1 CDS Ajs_0420 NC_008782.1 426143 427186 R KEGG: pol:Bpro_0396 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(426143..427186) Acidovorax sp. JS42 4671146 YP_984749.1 CDS Ajs_0421 NC_008782.1 427226 427942 D PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001; alanine racemase domain-containing protein 427226..427942 Acidovorax sp. JS42 4670568 YP_984750.1 CDS Ajs_0422 NC_008782.1 427981 429117 D PFAM: aminotransferase, class V; aminotransferase class-III; KEGG: rfr:Rfer_3691 aminotransferase, class V; class V aminotransferase 427981..429117 Acidovorax sp. JS42 4670572 YP_984751.1 CDS Ajs_0423 NC_008782.1 429185 430543 D PFAM: protein of unknown function DUF445; KEGG: bxe:Bxe_B1234 hypothetical protein; hypothetical protein 429185..430543 Acidovorax sp. JS42 4671173 YP_984752.1 CDS Ajs_0424 NC_008782.1 430603 431091 R KEGG: bbr:BB3068 hypothetical protein; hypothetical protein complement(430603..431091) Acidovorax sp. JS42 4671336 YP_984753.1 CDS Ajs_0425 NC_008782.1 431151 432635 R PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(431151..432635) Acidovorax sp. JS42 4671233 YP_984754.1 CDS Ajs_0426 NC_008782.1 432693 433382 R PFAM: MT-A70 family protein; KEGG: nmu:Nmul_A2608 MT-A70; MT-A70 family protein complement(432693..433382) Acidovorax sp. JS42 4671273 YP_984755.1 CDS Ajs_0427 NC_008782.1 433385 433972 R KEGG: rde:RD1_1080 hypothetical protein; hypothetical protein complement(433385..433972) Acidovorax sp. JS42 4671295 YP_984756.1 CDS purU NC_008782.1 434125 434973 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(434125..434973) Acidovorax sp. JS42 4671254 YP_984757.1 CDS Ajs_0430 NC_008782.1 437371 438225 R KEGG: pol:Bpro_0441 hypothetical protein; hypothetical protein complement(437371..438225) Acidovorax sp. JS42 4671450 YP_984758.1 CDS Ajs_0431 NC_008782.1 438515 440950 D TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; KEGG: bte:BTH_II1936 ribonucleotide reductase system; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 438515..440950 Acidovorax sp. JS42 4671455 YP_984759.1 CDS Ajs_0432 NC_008782.1 441129 443045 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; signal transduction histidine kinase, nitrate/nitrite-specific, NarQ 441129..443045 Acidovorax sp. JS42 4671481 YP_984760.1 CDS Ajs_0433 NC_008782.1 443042 443713 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1869 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 443042..443713 Acidovorax sp. JS42 4671484 YP_984761.1 CDS Ajs_0434 NC_008782.1 443860 445167 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1; major facilitator superfamily transporter 443860..445167 Acidovorax sp. JS42 4671855 YP_984762.1 CDS Ajs_0435 NC_008782.1 445188 446633 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0334 nitrate transporter; nitrite transporter 445188..446633 Acidovorax sp. JS42 4671857 YP_984763.1 CDS Ajs_0436 NC_008782.1 446670 450470 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rfr:Rfer_2792 nitrate reductase, alpha subunit; respiratory nitrate reductase subunit alpha apoprotein 446670..450470 Acidovorax sp. JS42 4671895 YP_984764.1 CDS Ajs_0437 NC_008782.1 450489 452012 D KEGG: pol:Bpro_4594 nitrate reductase, beta subunit; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; respiratory nitrate reductase subunit beta 450489..452012 Acidovorax sp. JS42 4671909 YP_984765.1 CDS Ajs_0438 NC_008782.1 452032 452730 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone; respiratory nitrate reductase chaperone NarJ 452032..452730 Acidovorax sp. JS42 4671934 YP_984766.1 CDS Ajs_0439 NC_008782.1 452727 453461 D TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 452727..453461 Acidovorax sp. JS42 4671949 YP_984767.1 CDS Ajs_0440 NC_008782.1 453552 454388 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2796 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 453552..454388 Acidovorax sp. JS42 4671910 YP_984768.1 CDS Ajs_0441 NC_008782.1 454410 455087 D PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase; carbonate dehydratase 454410..455087 Acidovorax sp. JS42 4671521 YP_984769.1 CDS Ajs_0442 NC_008782.1 455124 456458 D PFAM: NnrS family protein; KEGG: rfr:Rfer_4151 NnrS; NnrS family protein 455124..456458 Acidovorax sp. JS42 4671239 YP_984770.1 CDS Ajs_0443 NC_008782.1 456464 457126 D PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase; nitroreductase 456464..457126 Acidovorax sp. JS42 4671601 YP_984771.1 CDS Ajs_0444 NC_008782.1 457127 457552 D KEGG: rfr:Rfer_2344 hypothetical protein; hypothetical protein 457127..457552 Acidovorax sp. JS42 4670591 YP_984772.1 CDS Ajs_0445 NC_008782.1 457557 458102 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_4585 hypothetical protein; hemerythrin HHE cation-binding domain-containing protein 457557..458102 Acidovorax sp. JS42 4671627 YP_984773.1 CDS Ajs_0446 NC_008782.1 458336 458626 R KEGG: pol:Bpro_0443 hypothetical protein; hypothetical protein complement(458336..458626) Acidovorax sp. JS42 4671658 YP_984774.1 CDS Ajs_0447 NC_008782.1 458803 460017 R KEGG: pol:Bpro_0444 hypothetical protein; hypothetical protein complement(458803..460017) Acidovorax sp. JS42 4671662 YP_984775.1 CDS Ajs_0448 NC_008782.1 460022 460810 R PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_0445 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(460022..460810) Acidovorax sp. JS42 4671696 YP_984776.1 CDS Ajs_0449 NC_008782.1 460926 461909 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 460926..461909 Acidovorax sp. JS42 4671789 YP_984777.1 CDS Ajs_0450 NC_008782.1 461986 462954 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0112 hypothetical protein; hypothetical protein 461986..462954 Acidovorax sp. JS42 4671506 YP_984778.1 CDS Ajs_0451 NC_008782.1 463019 465085 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_4032 molybdopterin oxidoreductase; molybdopterin oxidoreductase complement(463019..465085) Acidovorax sp. JS42 4671823 YP_984779.1 CDS Ajs_0452 NC_008782.1 465207 466355 D PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc2864 probable LEU/ILE/VAL-binding signal peptide protein; extracellular ligand-binding receptor 465207..466355 Acidovorax sp. JS42 4671511 YP_984780.1 CDS Ajs_0453 NC_008782.1 466471 467676 D KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 466471..467676 Acidovorax sp. JS42 4671894 YP_984781.1 CDS Ajs_0454 NC_008782.1 467777 468877 D KEGG: pol:Bpro_2110 hypothetical protein; hypothetical protein 467777..468877 Acidovorax sp. JS42 4671931 YP_984782.1 CDS Ajs_0455 NC_008782.1 468962 469219 D PFAM: acyl-coA-binding protein, ACBP; KEGG: rfr:Rfer_3532 acyl-coA-binding protein, ACBP; acyl-CoA-binding protein 468962..469219 Acidovorax sp. JS42 4671861 YP_984783.1 CDS Ajs_0456 NC_008782.1 469304 470449 R KEGG: pol:Bpro_4033 putative zinc protease protein; putative zinc protease complement(469304..470449) Acidovorax sp. JS42 4671991 YP_984784.1 CDS Ajs_0457 NC_008782.1 470524 471195 D PFAM: methyladenine glycosylase; KEGG: pol:Bpro_3540 DNA-3-methyladenine glycosylase I; DNA-3-methyladenine glycosylase I 470524..471195 Acidovorax sp. JS42 4672512 YP_984785.1 CDS Ajs_0458 NC_008782.1 471265 471882 R KEGG: eca:ECA2796 hypothetical protein; hypothetical protein complement(471265..471882) Acidovorax sp. JS42 4672525 YP_984786.1 CDS Ajs_0459 NC_008782.1 471935 472105 R KEGG: rfr:Rfer_0521 hypothetical protein; hypothetical protein complement(471935..472105) Acidovorax sp. JS42 4672537 YP_984787.1 CDS Ajs_0460 NC_008782.1 472395 473678 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 472395..473678 Acidovorax sp. JS42 4672574 YP_984788.1 CDS Ajs_0461 NC_008782.1 473699 474022 D KEGG: rfr:Rfer_3535 hypothetical protein; hypothetical protein 473699..474022 Acidovorax sp. JS42 4672577 YP_984789.1 CDS Ajs_0462 NC_008782.1 474060 475097 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065; hypothetical protein complement(474060..475097) Acidovorax sp. JS42 4672706 YP_984790.1 CDS Ajs_0463 NC_008782.1 475263 476252 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065; hypothetical protein complement(475263..476252) Acidovorax sp. JS42 4672711 YP_984791.1 CDS Ajs_0464 NC_008782.1 476444 477691 R KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase; putative phenylacetate-CoA ligase complement(476444..477691) Acidovorax sp. JS42 4672602 YP_984792.1 CDS Ajs_0465 NC_008782.1 477784 478593 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0599 ABC transporter related; ABC transporter-like protein complement(477784..478593) Acidovorax sp. JS42 4672554 YP_984793.1 CDS Ajs_0466 NC_008782.1 478790 480115 R KEGG: rfr:Rfer_3538 hypothetical protein; hypothetical protein complement(478790..480115) Acidovorax sp. JS42 4672542 YP_984794.1 CDS Ajs_0467 NC_008782.1 480192 481268 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator; inner-membrane translocator complement(480192..481268) Acidovorax sp. JS42 4672565 YP_984795.1 CDS Ajs_0468 NC_008782.1 481387 482316 R PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator; inner-membrane translocator complement(481387..482316) Acidovorax sp. JS42 4672524 YP_984796.1 CDS Ajs_0469 NC_008782.1 482327 483112 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related; ABC transporter-like protein complement(482327..483112) Acidovorax sp. JS42 4672555 YP_984797.1 CDS Ajs_0470 NC_008782.1 483135 485183 R PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_0249 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(483135..485183) Acidovorax sp. JS42 4672505 YP_984798.1 CDS Ajs_0471 NC_008782.1 485258 487000 D PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1; peptidoglycan-binding domain-containing protein 485258..487000 Acidovorax sp. JS42 4672081 YP_984799.1 CDS Ajs_0472 NC_008782.1 487005 487814 D KEGG: rfr:Rfer_0082 hypothetical protein; hypothetical protein 487005..487814 Acidovorax sp. JS42 4671923 YP_984800.1 CDS Ajs_0473 NC_008782.1 487961 488779 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator 487961..488779 Acidovorax sp. JS42 4671908 YP_984801.1 CDS Ajs_0474 NC_008782.1 488791 489873 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein 488791..489873 Acidovorax sp. JS42 4672141 YP_984802.1 CDS Ajs_0475 NC_008782.1 490220 492172 D molecular chaperone; heat shock protein 90 490220..492172 Acidovorax sp. JS42 4672155 YP_984803.1 CDS Ajs_0476 NC_008782.1 492376 493368 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4856 hypothetical protein; hypothetical protein 492376..493368 Acidovorax sp. JS42 4672157 YP_984804.1 CDS Ajs_0477 NC_008782.1 493585 494184 D KEGG: sru:SRU_0623 hypothetical protein; hypothetical protein 493585..494184 Acidovorax sp. JS42 4672162 YP_984805.1 CDS Ajs_0478 NC_008782.1 494329 494880 D hypothetical protein 494329..494880 Acidovorax sp. JS42 4672174 YP_984806.1 CDS Ajs_0479 NC_008782.1 494887 495927 R catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase complement(494887..495927) Acidovorax sp. JS42 4672177 YP_984807.1 CDS Ajs_0480 NC_008782.1 495963 497402 R PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase; serine/threonine protein kinase complement(495963..497402) Acidovorax sp. JS42 4672190 YP_984808.1 CDS Ajs_0481 NC_008782.1 497446 498204 R PFAM: metallophosphoesterase; KEGG: ade:Adeh_3700 metallophosphoesterase; metallophosphoesterase complement(497446..498204) Acidovorax sp. JS42 4672214 YP_984809.1 CDS Ajs_0482 NC_008782.1 498335 498751 R PFAM: OsmC family protein; KEGG: pfo:Pfl_2206 OsmC-like protein; OsmC family protein complement(498335..498751) Acidovorax sp. JS42 4672241 YP_984810.1 CDS Ajs_0483 NC_008782.1 498813 499268 R PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(498813..499268) Acidovorax sp. JS42 4672250 YP_984811.1 CDS Ajs_0484 NC_008782.1 504022 504597 R TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein; CRISPR-associated Csy4 family protein complement(504022..504597) Acidovorax sp. JS42 4672256 YP_984812.1 CDS Ajs_0485 NC_008782.1 504611 505636 R TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: cvi:CV1752 hypothetical protein; CRISPR-associated Csy3 family protein complement(504611..505636) Acidovorax sp. JS42 4672281 YP_984813.1 CDS Ajs_0486 NC_008782.1 505693 506775 R TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: cvi:CV1753 hypothetical protein; CRISPR-associated Csy2 family protein complement(505693..506775) Acidovorax sp. JS42 4672294 YP_984814.1 CDS Ajs_0487 NC_008782.1 506772 508217 R TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: cvi:CV1754 hypothetical protein; CRISPR-associated Csy1 family protein complement(506772..508217) Acidovorax sp. JS42 4672301 YP_984815.1 CDS Ajs_0488 NC_008782.1 508222 511758 R TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: cvi:CV1755 hypothetical protein; CRISPR-associated helicase Cas3 family protein complement(508222..511758) Acidovorax sp. JS42 4672311 YP_984816.1 CDS Ajs_0489 NC_008782.1 511755 512759 R TIGRFAM: CRISPR-associated protein Cas1; KEGG: cvi:CV1756 hypothetical protein; CRISPR-associated Cas1 family protein complement(511755..512759) Acidovorax sp. JS42 4672324 YP_984817.1 CDS Ajs_0490 NC_008782.1 512795 513976 R PFAM: alanine racemase domain protein; KEGG: pol:Bpro_4092 putative threonine aldolase; alanine racemase domain-containing protein complement(512795..513976) Acidovorax sp. JS42 4672380 YP_984818.1 CDS Ajs_0491 NC_008782.1 513960 514604 R PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_0816 phosphoglycerate mutase; phosphoglycerate mutase complement(513960..514604) Acidovorax sp. JS42 4672381 YP_984819.1 CDS Ajs_0492 NC_008782.1 514627 515091 R KEGG: nmu:Nmul_A2600 hypothetical protein; hypothetical protein complement(514627..515091) Acidovorax sp. JS42 4672383 YP_984820.1 CDS Ajs_0493 NC_008782.1 515118 515753 R KEGG: pol:Bpro_4090 hypothetical protein; hypothetical protein complement(515118..515753) Acidovorax sp. JS42 4672037 YP_984821.1 CDS Ajs_0494 NC_008782.1 515798 516751 R TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase complement(515798..516751) Acidovorax sp. JS42 4672508 YP_984822.1 CDS Ajs_0495 NC_008782.1 516756 517127 R PFAM: dihydroneopterin aldolase; KEGG: pol:Bpro_4088 dihydroneopterin aldolase; dihydroneopterin aldolase complement(516756..517127) Acidovorax sp. JS42 4672481 YP_984823.1 CDS Ajs_0496 NC_008782.1 517145 517930 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(517145..517930) Acidovorax sp. JS42 4672585 YP_984824.1 CDS Ajs_0497 NC_008782.1 517949 519049 D PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185; hypothetical protein 517949..519049 Acidovorax sp. JS42 4672514 YP_984825.1 CDS Ajs_0499 NC_008782.1 519517 519711 D KEGG: rfr:Rfer_0811 hypothetical protein; hypothetical protein 519517..519711 Acidovorax sp. JS42 4672479 YP_984826.1 CDS Ajs_0500 NC_008782.1 519808 520818 D PFAM: ROK family protein; KEGG: pol:Bpro_4084 hypothetical protein; glucokinase 519808..520818 Acidovorax sp. JS42 4672520 YP_984827.1 CDS Ajs_0501 NC_008782.1 520894 522312 R KEGG: reu:Reut_A0416 glycosyl transferase, family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase complement(520894..522312) Acidovorax sp. JS42 4672485 YP_984828.1 CDS Ajs_0502 NC_008782.1 522329 524149 R PFAM: glycoside hydrolase 15-related; KEGG: reu:Reut_A0415 glycoside hydrolase 15-related; glycoside hydrolase 15-like complement(522329..524149) Acidovorax sp. JS42 4672582 YP_984829.1 CDS Ajs_0503 NC_008782.1 524146 524877 R KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase complement(524146..524877) Acidovorax sp. JS42 4671990 YP_984830.1 CDS Ajs_0504 NC_008782.1 525004 525441 D TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin; thioredoxin 525004..525441 Acidovorax sp. JS42 4672685 YP_984831.1 CDS Ajs_0505 NC_008782.1 525586 526863 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_1090 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(525586..526863) Acidovorax sp. JS42 4673127 YP_984832.1 CDS Ajs_0506 NC_008782.1 527175 527942 R PFAM: metallophosphoesterase; KEGG: rfr:Rfer_4142 metallophosphoesterase; metallophosphoesterase complement(527175..527942) Acidovorax sp. JS42 4673123 YP_984833.1 CDS Ajs_0507 NC_008782.1 527960 528646 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_1089 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(527960..528646) Acidovorax sp. JS42 4672713 YP_984834.1 CDS Ajs_0508 NC_008782.1 528776 529348 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rfr:Rfer_1087 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(528776..529348) Acidovorax sp. JS42 4673153 YP_984835.1 CDS Ajs_0509 NC_008782.1 529372 531345 D PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 529372..531345 Acidovorax sp. JS42 4673105 YP_984836.1 CDS Ajs_0510 NC_008782.1 531421 531993 R PFAM: cytochrome B561; KEGG: rsp:RSP_2807 putative cytochrome b; cytochrome B561 complement(531421..531993) Acidovorax sp. JS42 4673108 YP_984837.1 CDS Ajs_0511 NC_008782.1 531974 532243 R KEGG: rso:RSc2353 probable signal peptide protein; putative signal peptide protein complement(531974..532243) Acidovorax sp. JS42 4673157 YP_984838.1 CDS Ajs_0512 NC_008782.1 532302 533006 R PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_2273 2OG-Fe(II) oxygenase; putative hydroxylase complement(532302..533006) Acidovorax sp. JS42 4673126 YP_984839.1 CDS Ajs_0513 NC_008782.1 532979 534076 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pat:Patl_2274 (S)-2-hydroxy-acid oxidase; (S)-2-hydroxy-acid oxidase complement(532979..534076) Acidovorax sp. JS42 4673181 YP_984840.1 CDS Ajs_0514 NC_008782.1 534129 536435 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pat:Patl_2275 TonB-dependent receptor; TonB-dependent receptor complement(534129..536435) Acidovorax sp. JS42 4673189 YP_984841.1 CDS Ajs_0515 NC_008782.1 536686 537612 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like; beta-lactamase domain-containing protein complement(536686..537612) Acidovorax sp. JS42 4673185 YP_984842.1 CDS Ajs_0516 NC_008782.1 537647 539332 R PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4225 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(537647..539332) Acidovorax sp. JS42 4673200 YP_984843.1 CDS Ajs_0517 NC_008782.1 539473 540384 D PFAM: PGAP1 family protein; KEGG: pol:Bpro_4221 putative lipase transmembrane protein; PGAP1 family protein 539473..540384 Acidovorax sp. JS42 4673209 YP_984844.1 CDS phhA NC_008782.1 540403 541242 R phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(540403..541242) Acidovorax sp. JS42 4672764 YP_984845.1 CDS Ajs_0519 NC_008782.1 541328 542296 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3791 uncharacterized protein UPF0065; hypothetical protein complement(541328..542296) Acidovorax sp. JS42 4672590 YP_984846.1 CDS Ajs_0520 NC_008782.1 542387 543505 R KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase complement(542387..543505) Acidovorax sp. JS42 4672780 YP_984847.1 CDS Ajs_0521 NC_008782.1 543691 544176 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4212 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 543691..544176 Acidovorax sp. JS42 4672807 YP_984848.1 CDS Ajs_0522 NC_008782.1 544408 545085 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 544408..545085 Acidovorax sp. JS42 4672474 YP_984849.1 CDS Ajs_0523 NC_008782.1 545137 546057 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: rfr:Rfer_3698 CBS; CBS domain-containing protein 545137..546057 Acidovorax sp. JS42 4672841 YP_984850.1 CDS lnt NC_008782.1 546057 547655 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 546057..547655 Acidovorax sp. JS42 4672861 YP_984851.1 CDS Ajs_0525 NC_008782.1 547836 548360 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 547836..548360 Acidovorax sp. JS42 4672885 YP_984852.1 CDS Ajs_0526 NC_008782.1 548357 549580 D PFAM: beta-ketoacyl synthase; KEGG: pen:PSEEN3623 beta-ketoacyl-ACP synthase I (3-oxoacyl-[acyl-carrier-protein] synthase I); beta-ketoacyl synthase 548357..549580 Acidovorax sp. JS42 4672908 YP_984853.1 CDS glyQ NC_008782.1 549687 550640 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 549687..550640 Acidovorax sp. JS42 4672912 YP_984854.1 CDS Ajs_0528 NC_008782.1 550671 552833 D KEGG: pol:Bpro_4202 glycine--tRNA ligase; glycine--tRNA ligase 550671..552833 Acidovorax sp. JS42 4672967 YP_984855.1 CDS Ajs_0529 NC_008782.1 552918 553493 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase; D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase 552918..553493 Acidovorax sp. JS42 4672983 YP_984856.1 CDS Ajs_0530 NC_008782.1 553571 554320 D PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 553571..554320 Acidovorax sp. JS42 4672991 YP_984857.1 CDS Ajs_0531 NC_008782.1 554322 555242 D PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45; hypothetical protein 554322..555242 Acidovorax sp. JS42 4673011 YP_984858.1 CDS Ajs_0532 NC_008782.1 555242 555721 D SMART: Rhodanese domain protein; KEGG: rfr:Rfer_3613 rhodanese-like; rhodanese domain-containing protein 555242..555721 Acidovorax sp. JS42 4673018 YP_984859.1 CDS Ajs_0533 NC_008782.1 555815 556303 R PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: eba:ebA3069 conserved hypothetical protein, probably involved in cell wall turnover; peptidoglycan-binding LysM complement(555815..556303) Acidovorax sp. JS42 4673026 YP_984860.1 CDS Ajs_0534 NC_008782.1 556460 557236 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 556460..557236 Acidovorax sp. JS42 4673033 YP_984861.1 CDS Ajs_0535 NC_008782.1 557267 557920 R PFAM: regulatory protein, TetR; KEGG: rfr:Rfer_3529 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(557267..557920) Acidovorax sp. JS42 4672734 YP_984862.1 CDS Ajs_0536 NC_008782.1 558013 558486 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated; poly(hydroxyalkanoate) granule-associated protein complement(558013..558486) Acidovorax sp. JS42 4673056 YP_984863.1 CDS Ajs_0537 NC_008782.1 558675 559736 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 558675..559736 Acidovorax sp. JS42 4672740 YP_984864.1 CDS Ajs_0538 NC_008782.1 559733 560611 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 559733..560611 Acidovorax sp. JS42 4673190 YP_984865.1 CDS Ajs_0539 NC_008782.1 560620 561504 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 560620..561504 Acidovorax sp. JS42 4673154 YP_984866.1 CDS Ajs_0540 NC_008782.1 561512 562060 D KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 561512..562060 Acidovorax sp. JS42 4673132 YP_984867.1 CDS Ajs_0541 NC_008782.1 562152 563054 D TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase, family 2; KEGG: noc:Noc_2177 rhamnosyltransferase; rhamnosyltransferase 562152..563054 Acidovorax sp. JS42 4672710 YP_984868.1 CDS Ajs_0542 NC_008782.1 563100 566051 D PFAM: glycosyl transferase, family 2; KEGG: xac:XAC3598 truncated O-antigen biosynthesis protein; glycosyl transferase family protein 563100..566051 Acidovorax sp. JS42 4673191 YP_984869.1 CDS Ajs_0543 NC_008782.1 566136 567431 D KEGG: nar:Saro_3231 hypothetical protein; hypothetical protein 566136..567431 Acidovorax sp. JS42 4673229 YP_984870.1 CDS Ajs_0544 NC_008782.1 567445 568287 D PFAM: ABC-2 type transporter; KEGG: bur:Bcep18194_A3980 ABC polysaccharide/polyol phosphate export pump, inner membrane subunit; ABC-2 type transporter 567445..568287 Acidovorax sp. JS42 4673864 YP_984871.1 CDS Ajs_0545 NC_008782.1 568277 570727 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3694 ABC transporter related; ABC transporter-like protein 568277..570727 Acidovorax sp. JS42 4673875 YP_984872.1 CDS Ajs_0546 NC_008782.1 570724 571374 D KEGG: fal:FRAAL5663 hypothetical protein; putative acetyltransferases (isoleucine patch superfamily); hypothetical protein 570724..571374 Acidovorax sp. JS42 4673874 YP_984873.1 CDS Ajs_0547 NC_008782.1 571414 572862 D KEGG: nfa:nfa2110 hypothetical protein; membrane protein 571414..572862 Acidovorax sp. JS42 4673890 YP_984874.1 CDS Ajs_0548 NC_008782.1 572939 574018 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 572939..574018 Acidovorax sp. JS42 4673867 YP_984875.1 CDS Ajs_0549 NC_008782.1 574053 575018 D PFAM: glycosyl transferase, family 2; KEGG: zmo:ZMO0947 hypothetical protein; glycosyl transferase family protein 574053..575018 Acidovorax sp. JS42 4673898 YP_984876.1 CDS Ajs_0550 NC_008782.1 575015 575398 D PFAM: GtrA family protein; KEGG: ret:RHE_CH00273 hypothetical conserved membrane protein; GtrA family protein 575015..575398 Acidovorax sp. JS42 4673899 YP_984877.1 CDS Ajs_0551 NC_008782.1 575681 576832 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bth:BT3376 nucleotide sugar transaminase; DegT/DnrJ/EryC1/StrS aminotransferase 575681..576832 Acidovorax sp. JS42 4673858 YP_984878.1 CDS Ajs_0552 NC_008782.1 577232 579193 D PFAM: TonB-dependent receptor, plug; KEGG: rfr:Rfer_2036 TonB-dependent receptor; TonB-dependent receptor, plug 577232..579193 Acidovorax sp. JS42 4673258 YP_984879.1 CDS Ajs_0553 NC_008782.1 579205 580149 D KEGG: rfr:Rfer_2037 hypothetical protein; hypothetical protein 579205..580149 Acidovorax sp. JS42 4673926 YP_984880.1 CDS Ajs_0554 NC_008782.1 580146 582173 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase 580146..582173 Acidovorax sp. JS42 4673933 YP_984881.1 CDS Ajs_0555 NC_008782.1 582184 582882 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mes:Meso_0341 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 582184..582882 Acidovorax sp. JS42 4673951 YP_984882.1 CDS Ajs_0556 NC_008782.1 582919 583968 D PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_4042 glycosyl transferase, family 2; glycosyl transferase family protein 582919..583968 Acidovorax sp. JS42 4673948 YP_984883.1 CDS Ajs_0557 NC_008782.1 583986 585107 D PFAM: acyltransferase 3; KEGG: rru:Rru_A2715 acyltransferase 3; acyltransferase 3 583986..585107 Acidovorax sp. JS42 4673970 YP_984884.1 CDS Ajs_0558 NC_008782.1 585393 591035 D KEGG: ava:Ava_4160 VCBS; hypothetical protein 585393..591035 Acidovorax sp. JS42 4673978 YP_984885.1 CDS Ajs_0559 NC_008782.1 591448 592710 D PFAM: glycosyl transferase, group 1; KEGG: syf:Synpcc7942_1625 probable glycosyltransferase; group 1 glycosyl transferase 591448..592710 Acidovorax sp. JS42 4673980 YP_984886.1 CDS Ajs_0560 NC_008782.1 592732 592977 D hypothetical protein 592732..592977 Acidovorax sp. JS42 4674029 YP_984887.1 CDS Ajs_0561 NC_008782.1 593025 593528 D KEGG: ccr:CC3052 hypothetical protein; hypothetical protein 593025..593528 Acidovorax sp. JS42 4673985 YP_984888.1 CDS Ajs_0562 NC_008782.1 593581 594693 D PFAM: protein of unknown function DUF1568; KEGG: eba:ebA1554 hypothetical transposase; hypothetical protein 593581..594693 Acidovorax sp. JS42 4673988 YP_984889.1 CDS Ajs_0563 NC_008782.1 594690 595211 D hypothetical protein 594690..595211 Acidovorax sp. JS42 4673987 YP_984890.1 CDS Ajs_0564 NC_008782.1 595154 595924 R KEGG: bcn:Bcen_2656 hypothetical protein; hypothetical protein complement(595154..595924) Acidovorax sp. JS42 4673999 YP_984891.1 CDS Ajs_0565 NC_008782.1 596144 596392 R hypothetical protein complement(596144..596392) Acidovorax sp. JS42 4673991 YP_984892.1 CDS Ajs_0566 NC_008782.1 596602 597951 D KEGG: tdn:Tmden_1855 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 596602..597951 Acidovorax sp. JS42 4674006 YP_984893.1 CDS Ajs_0567 NC_008782.1 598013 598489 R KEGG: nmu:Nmul_A0918 hypothetical protein; hypothetical protein complement(598013..598489) Acidovorax sp. JS42 4674030 YP_984894.1 CDS Ajs_0568 NC_008782.1 598489 598941 R KEGG: nmu:Nmul_A0917 hypothetical protein; hypothetical protein complement(598489..598941) Acidovorax sp. JS42 4674037 YP_984895.1 CDS Ajs_0569 NC_008782.1 598999 599304 D KEGG: wol:WD0572 hypothetical protein; hypothetical protein 598999..599304 Acidovorax sp. JS42 4673904 YP_984896.1 CDS Ajs_0570 NC_008782.1 599542 599994 D PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein 599542..599994 Acidovorax sp. JS42 4673932 YP_984897.1 CDS Ajs_0571 NC_008782.1 600015 600326 D PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein 600015..600326 Acidovorax sp. JS42 4673934 YP_984898.1 CDS Ajs_0572 NC_008782.1 600407 601921 D PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 600407..601921 Acidovorax sp. JS42 4673882 YP_984899.1 CDS Ajs_0574 NC_008782.1 602919 604310 D PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_2203 ISRSO17-transposase protein; transposase, IS4 family protein 602919..604310 Acidovorax sp. JS42 4673918 YP_984900.1 CDS Ajs_0576 NC_008782.1 605614 606702 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 605614..606702 Acidovorax sp. JS42 4673983 YP_984901.1 CDS Ajs_0578 NC_008782.1 607304 608860 D PFAM: glycosyl transferase, group 1; KEGG: cch:Cag_0447 hypothetical protein; group 1 glycosyl transferase 607304..608860 Acidovorax sp. JS42 4673359 YP_984902.1 CDS Ajs_0579 NC_008782.1 608924 609481 R KEGG: ccr:CC3052 hypothetical protein; hypothetical protein complement(608924..609481) Acidovorax sp. JS42 4673379 YP_984903.1 CDS Ajs_0580 NC_008782.1 609487 610338 R PFAM: SapC family protein; KEGG: eba:ebA1573 SapC family protein; SapC family protein complement(609487..610338) Acidovorax sp. JS42 4673398 YP_984904.1 CDS Ajs_0581 NC_008782.1 610763 611377 D KEGG: noc:Noc_2211 transposase, IS605 OrfB; hypothetical protein 610763..611377 Acidovorax sp. JS42 4673418 YP_984905.1 CDS Ajs_0582 NC_008782.1 611374 613119 D KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 611374..613119 Acidovorax sp. JS42 4673544 YP_984906.1 CDS Ajs_0583 NC_008782.1 613154 614878 D KEGG: ppu:PP_2560 transport protein HasD, putative; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 613154..614878 Acidovorax sp. JS42 4673547 YP_984907.1 CDS Ajs_0584 NC_008782.1 614930 616297 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_1346 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 614930..616297 Acidovorax sp. JS42 4673553 YP_984908.1 CDS Ajs_0585 NC_008782.1 616302 617672 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_3926 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 616302..617672 Acidovorax sp. JS42 4673565 YP_984909.1 CDS Ajs_0586 NC_008782.1 617710 618792 D PFAM: glycosyl transferase, group 1; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1; group 1 glycosyl transferase 617710..618792 Acidovorax sp. JS42 4673570 YP_984910.1 CDS Ajs_0587 NC_008782.1 618857 619957 D PFAM: glycosyl transferase, family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4; glycosyl transferase family protein 618857..619957 Acidovorax sp. JS42 4673601 YP_984911.1 CDS Ajs_0588 NC_008782.1 620027 620917 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 620027..620917 Acidovorax sp. JS42 4673636 YP_984912.1 CDS slmA NC_008782.1 621110 621754 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 621110..621754 Acidovorax sp. JS42 4673654 YP_984913.1 CDS Ajs_0590 NC_008782.1 622021 623001 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(622021..623001) Acidovorax sp. JS42 4673670 YP_984914.1 CDS Ajs_0591 NC_008782.1 623150 623815 D PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family; TetR family transcriptional regulator 623150..623815 Acidovorax sp. JS42 4673689 YP_984915.1 CDS Ajs_0592 NC_008782.1 623880 625676 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 623880..625676 Acidovorax sp. JS42 4673691 YP_984916.1 CDS Ajs_0593 NC_008782.1 625729 626163 D KEGG: rfr:Rfer_3518 hypothetical protein; hypothetical protein 625729..626163 Acidovorax sp. JS42 4673693 YP_984917.1 CDS Ajs_0594 NC_008782.1 626264 628666 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3517 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 626264..628666 Acidovorax sp. JS42 4673706 YP_984918.1 CDS Ajs_0595 NC_008782.1 628688 629884 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 628688..629884 Acidovorax sp. JS42 4673733 YP_984919.1 CDS Ajs_0596 NC_008782.1 629965 630861 D KEGG: pau:PA14_40820 putative hydrolase; putative hydrolase 629965..630861 Acidovorax sp. JS42 4673315 YP_984920.1 CDS Ajs_0597 NC_008782.1 630887 631729 D KEGG: pol:Bpro_3933 hypothetical protein; hypothetical protein 630887..631729 Acidovorax sp. JS42 4673917 YP_984921.1 CDS Ajs_0598 NC_008782.1 631747 632523 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 631747..632523 Acidovorax sp. JS42 4673876 YP_984922.1 CDS Ajs_0599 NC_008782.1 632703 633185 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_3505 phenylacetic acid degradation-related protein; hypothetical protein 632703..633185 Acidovorax sp. JS42 4673912 YP_984923.1 CDS Ajs_0600 NC_008782.1 633373 633927 D PFAM: protein of unknown function DUF583; KEGG: rfr:Rfer_3896 protein of unknown function DUF583; hypothetical protein 633373..633927 Acidovorax sp. JS42 4673921 YP_984924.1 CDS Ajs_0601 NC_008782.1 633980 634411 R PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily; thioesterase superfamily protein complement(633980..634411) Acidovorax sp. JS42 4673905 YP_984925.1 CDS Ajs_0602 NC_008782.1 634454 636265 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related; ABC transporter-like protein 634454..636265 Acidovorax sp. JS42 4673935 YP_984926.1 CDS Ajs_0603 NC_008782.1 636320 636634 D PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: rfr:Rfer_3445 hypothetical protein; MazG nucleotide pyrophosphohydrolase 636320..636634 Acidovorax sp. JS42 4674012 YP_984927.1 CDS Ajs_0604 NC_008782.1 636748 637779 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(636748..637779) Acidovorax sp. JS42 4674080 YP_984928.1 CDS Ajs_0605 NC_008782.1 637813 639111 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rme:Rmet_1149 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(637813..639111) Acidovorax sp. JS42 4674706 YP_984929.1 CDS Ajs_0606 NC_008782.1 639108 639698 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(639108..639698) Acidovorax sp. JS42 4674692 YP_984930.1 CDS Ajs_0607 NC_008782.1 639927 640865 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator 639927..640865 Acidovorax sp. JS42 4674673 YP_984931.1 CDS Ajs_0608 NC_008782.1 641047 641937 D PFAM: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A2361 extracellular solute-binding protein, family 3; extracellular solute-binding protein 641047..641937 Acidovorax sp. JS42 4674656 YP_984932.1 CDS Ajs_0609 NC_008782.1 642060 642959 D PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3; extracellular solute-binding protein 642060..642959 Acidovorax sp. JS42 4674564 YP_984933.1 CDS Ajs_0610 NC_008782.1 643080 643832 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 643080..643832 Acidovorax sp. JS42 4674422 YP_984934.1 CDS Ajs_0611 NC_008782.1 643834 644505 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 643834..644505 Acidovorax sp. JS42 4674493 YP_984935.1 CDS Ajs_0612 NC_008782.1 644528 645265 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related; ABC transporter-like protein 644528..645265 Acidovorax sp. JS42 4674486 YP_984936.1 CDS Ajs_0613 NC_008782.1 645541 646527 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(645541..646527) Acidovorax sp. JS42 4674437 YP_984937.1 CDS Ajs_0614 NC_008782.1 646706 647137 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: reu:Reut_A2673 helix-turn-helix, fis-type; AsnC family transcriptional regulator 646706..647137 Acidovorax sp. JS42 4674453 YP_984938.1 CDS Ajs_0615 NC_008782.1 647163 647819 R PFAM: cytochrome c, class I; KEGG: dar:Daro_3327 cytochrome c, class I; class I cytochrome c complement(647163..647819) Acidovorax sp. JS42 4674454 YP_984939.1 CDS Ajs_0616 NC_008782.1 647916 648752 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: rfr:Rfer_0644 HAD-superfamily hydrolase subfamily IIB; HAD family hydrolase complement(647916..648752) Acidovorax sp. JS42 4674440 YP_984940.1 CDS prfC NC_008782.1 648770 650395 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(648770..650395) Acidovorax sp. JS42 4674429 YP_984941.1 CDS Ajs_0618 NC_008782.1 650682 652112 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 650682..652112 Acidovorax sp. JS42 4674377 YP_984942.1 CDS Ajs_0619 NC_008782.1 652225 653223 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 652225..653223 Acidovorax sp. JS42 4674352 YP_984943.1 CDS Ajs_0620 NC_008782.1 653220 654059 D TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 653220..654059 Acidovorax sp. JS42 4674338 YP_984944.1 CDS Ajs_0621 NC_008782.1 654070 654753 D hypothetical protein 654070..654753 Acidovorax sp. JS42 4674317 YP_984945.1 CDS Ajs_0622 NC_008782.1 654962 655489 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A; rare lipoprotein A 654962..655489 Acidovorax sp. JS42 4674302 YP_984946.1 CDS Ajs_0623 NC_008782.1 655534 656424 R PFAM: protein of unknown function DUF519; KEGG: rfr:Rfer_0720 protein of unknown function DUF519; hypothetical protein complement(655534..656424) Acidovorax sp. JS42 4674301 YP_984947.1 CDS Ajs_0624 NC_008782.1 656544 658526 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase; protein kinase 656544..658526 Acidovorax sp. JS42 4674286 YP_984948.1 CDS rplM NC_008782.1 658680 659108 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 658680..659108 Acidovorax sp. JS42 4674282 YP_984949.1 CDS rpsI NC_008782.1 659119 659511 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 659119..659511 Acidovorax sp. JS42 4674271 YP_984950.1 CDS Ajs_0628 NC_008782.1 660423 660821 D PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_4110 protein of unknown function DUF583; hypothetical protein 660423..660821 Acidovorax sp. JS42 4674262 YP_984951.1 CDS Ajs_0629 NC_008782.1 660882 661256 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 660882..661256 Acidovorax sp. JS42 4674259 YP_984952.1 CDS anmK NC_008782.1 661319 662440 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(661319..662440) Acidovorax sp. JS42 4674248 YP_984953.1 CDS Ajs_0631 NC_008782.1 662453 663817 R PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B; peptidase M23B complement(662453..663817) Acidovorax sp. JS42 4674202 YP_984954.1 CDS Ajs_0632 NC_008782.1 664011 665243 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 664011..665243 Acidovorax sp. JS42 4674122 YP_984955.1 CDS Ajs_0633 NC_008782.1 665314 665835 R TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_0766 methyl-accepting chemotaxis sensory transducer; hemerythrin-like metal-binding protein complement(665314..665835) Acidovorax sp. JS42 4674187 YP_984956.1 CDS Ajs_0634 NC_008782.1 665988 666998 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(665988..666998) Acidovorax sp. JS42 4674159 YP_984957.1 CDS Ajs_0635 NC_008782.1 667145 667591 D KEGG: rfr:Rfer_1085 hypothetical protein; hypothetical protein 667145..667591 Acidovorax sp. JS42 4673629 YP_984958.1 CDS Ajs_0636 NC_008782.1 667783 669213 D KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase 667783..669213 Acidovorax sp. JS42 4673286 YP_984959.1 CDS Ajs_0637 NC_008782.1 669218 669988 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dge:Dgeo_2525 multi-sensor signal transduction histidine kinase; histidine kinase 669218..669988 Acidovorax sp. JS42 4673586 YP_984960.1 CDS Ajs_0638 NC_008782.1 670023 670364 R KEGG: csa:Csal_1427 transcriptional regulatory protein, MerR family; MerR family transcriptional regulator complement(670023..670364) Acidovorax sp. JS42 4673566 YP_984961.1 CDS Ajs_0639 NC_008782.1 670367 671362 R PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA2728 curved DNA-binding protein; heat shock protein DnaJ domain-containing protein complement(670367..671362) Acidovorax sp. JS42 4673475 YP_984962.1 CDS Ajs_0640 NC_008782.1 671488 671979 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: mxa:MXAN_0502 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(671488..671979) Acidovorax sp. JS42 4673449 YP_984963.1 CDS Ajs_0641 NC_008782.1 672116 674026 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 672116..674026 Acidovorax sp. JS42 4673435 YP_984964.1 CDS Ajs_0642 NC_008782.1 674181 674816 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cvi:CV0714 hypothetical protein; NmrA family protein complement(674181..674816) Acidovorax sp. JS42 4673234 YP_984965.1 CDS Ajs_0643 NC_008782.1 674932 675834 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV0715 transcriptional regulator PtxR; LysR family transcriptional regulator 674932..675834 Acidovorax sp. JS42 4673416 YP_984966.1 CDS Ajs_0645 NC_008782.1 676689 677750 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA3950 putative zinc-binding dehydrogenase; alcohol dehydrogenase 676689..677750 Acidovorax sp. JS42 4673402 YP_984967.1 CDS infA NC_008782.1 677747 678016 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(677747..678016) Acidovorax sp. JS42 4673384 YP_984968.1 CDS Ajs_0647 NC_008782.1 678520 681933 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: mes:Meso_1942 multi-sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase 678520..681933 Acidovorax sp. JS42 4673355 YP_984969.1 CDS Ajs_0648 NC_008782.1 681977 682810 D PFAM: MCP methyltransferase, CheR-type; KEGG: xcb:XC_3058 chemotaxis protein; MCP methyltransferase, CheR-type 681977..682810 Acidovorax sp. JS42 4673354 YP_984970.1 CDS Ajs_0649 NC_008782.1 682807 683406 D PFAM: CheB methylesterase; KEGG: xac:XAC1280 protein-glutamate methylesterase; CheB methylesterase 682807..683406 Acidovorax sp. JS42 4672725 YP_984971.1 CDS Ajs_0650 NC_008782.1 683403 684551 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: xcb:XC_3060 two-component system regulatory protein; response regulator receiver sensor signal transduction histidine kinase 683403..684551 Acidovorax sp. JS42 4672723 YP_984972.1 CDS Ajs_0651 NC_008782.1 684604 685020 R PFAM: response regulator receiver; KEGG: syw:SYNW0947 two-component response regulator, phosphate; response regulator receiver protein complement(684604..685020) Acidovorax sp. JS42 4672887 YP_984973.1 CDS Ajs_0652 NC_008782.1 685135 685797 R PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein; DNA-N1-methyladenine dioxygenase complement(685135..685797) Acidovorax sp. JS42 4672869 YP_984974.1 CDS Ajs_0653 NC_008782.1 685981 687555 D PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3284 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 685981..687555 Acidovorax sp. JS42 4672694 YP_984975.1 CDS Ajs_0654 NC_008782.1 687627 688289 D PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase; DSBA oxidoreductase 687627..688289 Acidovorax sp. JS42 4672844 YP_984976.1 CDS Ajs_0655 NC_008782.1 688358 688864 R PFAM: CreA family protein; KEGG: rme:Rmet_4747 CreA; CreA family protein complement(688358..688864) Acidovorax sp. JS42 4672836 YP_984977.1 CDS Ajs_0656 NC_008782.1 688861 691446 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(688861..691446) Acidovorax sp. JS42 4672773 YP_984978.1 CDS Ajs_0657 NC_008782.1 691541 693724 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(691541..693724) Acidovorax sp. JS42 4672620 YP_984979.1 CDS Ajs_0658 NC_008782.1 694036 696288 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related; ABC transporter-like protein 694036..696288 Acidovorax sp. JS42 4672030 YP_984980.1 CDS Ajs_0659 NC_008782.1 696305 696811 D KEGG: pol:Bpro_1418 hypothetical protein; hypothetical protein 696305..696811 Acidovorax sp. JS42 4672029 YP_984981.1 CDS Ajs_0660 NC_008782.1 697007 697447 D KEGG: rfr:Rfer_0823 hypothetical protein; hypothetical protein 697007..697447 Acidovorax sp. JS42 4672351 YP_984982.1 CDS Ajs_0661 NC_008782.1 697548 697925 R PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein; signal transduction protein complement(697548..697925) Acidovorax sp. JS42 4672343 YP_984983.1 CDS Ajs_0662 NC_008782.1 697957 698898 R PFAM: 5-nucleotidase; KEGG: rfr:Rfer_0734 5-nucleotidase; 5-nucleotidase complement(697957..698898) Acidovorax sp. JS42 4672298 YP_984984.1 CDS Ajs_0663 NC_008782.1 698895 700124 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pol:Bpro_1331 general secretion pathway protein F; general secretion pathway protein F complement(698895..700124) Acidovorax sp. JS42 4672257 YP_984985.1 CDS Ajs_0664 NC_008782.1 700186 701217 R PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like; luciferase family protein complement(700186..701217) Acidovorax sp. JS42 4672224 YP_984986.1 CDS Ajs_0665 NC_008782.1 701414 701938 D hypothetical protein 701414..701938 Acidovorax sp. JS42 4672002 YP_984987.1 CDS Ajs_0666 NC_008782.1 702069 703457 R KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(702069..703457) Acidovorax sp. JS42 4672001 YP_984988.1 CDS Ajs_0667 NC_008782.1 703470 705815 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rfr:Rfer_0542 type II and III secretion system protein; general secretion pathway protein D complement(703470..705815) Acidovorax sp. JS42 4672000 YP_984989.1 CDS Ajs_0668 NC_008782.1 705820 706632 R KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein complement(705820..706632) Acidovorax sp. JS42 4671954 YP_984990.1 CDS Ajs_0669 NC_008782.1 706649 707194 R KEGG: pol:Bpro_1327 hypothetical protein; hypothetical protein complement(706649..707194) Acidovorax sp. JS42 4672117 YP_984991.1 CDS Ajs_0670 NC_008782.1 707191 708420 R PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein; general secretion pathway L complement(707191..708420) Acidovorax sp. JS42 4672109 YP_984992.1 CDS Ajs_0671 NC_008782.1 708480 709625 R PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K; general secretion pathway protein K complement(708480..709625) Acidovorax sp. JS42 4671953 YP_984993.1 CDS Ajs_0672 NC_008782.1 709622 710305 R KEGG: rfr:Rfer_0537 methylation; hypothetical protein complement(709622..710305) Acidovorax sp. JS42 4671766 YP_984994.1 CDS Ajs_0673 NC_008782.1 710475 710867 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rfr:Rfer_0536 general secretion pathway protein I; general secretion pathway protein I complement(710475..710867) Acidovorax sp. JS42 4671497 YP_984995.1 CDS Ajs_0674 NC_008782.1 710864 711412 R TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H; general secretion pathway protein H complement(710864..711412) Acidovorax sp. JS42 4671753 YP_984996.1 CDS Ajs_0675 NC_008782.1 711446 711925 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pol:Bpro_1321 general secretion pathway protein G; general secretion pathway protein G complement(711446..711925) Acidovorax sp. JS42 4671737 YP_984997.1 CDS Ajs_0676 NC_008782.1 711949 712398 D KEGG: pol:Bpro_1320 hypothetical protein; hypothetical protein 711949..712398 Acidovorax sp. JS42 4671722 YP_984998.1 CDS Ajs_0677 NC_008782.1 712455 713066 R PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase; phosphoglycerate mutase complement(712455..713066) Acidovorax sp. JS42 4671704 YP_984999.1 CDS Ajs_0678 NC_008782.1 713063 713875 R PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase; cobalamin-5'-phosphate synthase complement(713063..713875) Acidovorax sp. JS42 4671693 YP_985000.1 CDS Ajs_0679 NC_008782.1 713942 715504 R threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase complement(713942..715504) Acidovorax sp. JS42 4671445 YP_985001.1 CDS Ajs_0680 NC_008782.1 715828 716277 D PFAM: OsmC family protein; KEGG: rfr:Rfer_0732 OsmC-like protein; OsmC family protein 715828..716277 Acidovorax sp. JS42 4671638 YP_985002.1 CDS Ajs_0681 NC_008782.1 716294 716911 R KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein complement(716294..716911) Acidovorax sp. JS42 4671535 YP_985003.1 CDS Ajs_0682 NC_008782.1 717222 718310 D PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type; porin 717222..718310 Acidovorax sp. JS42 4670550 YP_985004.1 CDS Ajs_0683 NC_008782.1 718543 719667 D PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type; porin 718543..719667 Acidovorax sp. JS42 4671008 YP_985005.1 CDS Ajs_0685 NC_008782.1 721449 723029 D PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic); extracellular solute-binding protein 721449..723029 Acidovorax sp. JS42 4670545 YP_985006.1 CDS Ajs_0686 NC_008782.1 723177 724160 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 723177..724160 Acidovorax sp. JS42 4670544 YP_985007.1 CDS Ajs_0687 NC_008782.1 724162 725388 D KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 724162..725388 Acidovorax sp. JS42 4670935 YP_985008.1 CDS Ajs_0688 NC_008782.1 725429 727000 D PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5; extracellular solute-binding protein 725429..727000 Acidovorax sp. JS42 4670902 YP_985009.1 CDS Ajs_0689 NC_008782.1 727047 727958 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 727047..727958 Acidovorax sp. JS42 4670885 YP_985010.1 CDS Ajs_0690 NC_008782.1 728108 729124 D KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 728108..729124 Acidovorax sp. JS42 4670881 YP_985011.1 CDS Ajs_0691 NC_008782.1 729121 730155 D KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 729121..730155 Acidovorax sp. JS42 4670848 YP_985012.1 CDS Ajs_0692 NC_008782.1 730333 732246 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mxa:MXAN_2236 putative 5'-nucleotidase; 5'-nucleotidase 730333..732246 Acidovorax sp. JS42 4670526 YP_985013.1 CDS Ajs_0693 NC_008782.1 732325 732819 D PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL; PBP family phospholipid-binding protein 732325..732819 Acidovorax sp. JS42 4670521 YP_985014.1 CDS Ajs_0694 NC_008782.1 733087 733932 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(733087..733932) Acidovorax sp. JS42 4670764 YP_985015.1 CDS Ajs_0695 NC_008782.1 733926 735401 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(733926..735401) Acidovorax sp. JS42 4670760 YP_985016.1 CDS Ajs_0696 NC_008782.1 735597 736547 D KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 735597..736547 Acidovorax sp. JS42 4670758 YP_985017.1 CDS pgi NC_008782.1 736544 738160 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 736544..738160 Acidovorax sp. JS42 4670512 YP_985018.1 CDS Ajs_0698 NC_008782.1 738191 739357 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein; diguanylate cyclase complement(738191..739357) Acidovorax sp. JS42 4670510 YP_985019.1 CDS groEL NC_008782.1 739628 741268 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(739628..741268) Acidovorax sp. JS42 4670506 YP_985020.1 CDS groES NC_008782.1 741359 741649 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(741359..741649) Acidovorax sp. JS42 4674724 YP_985021.1 CDS Ajs_0701 NC_008782.1 741860 742894 R TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: bam:Bamb_4267 cytidyltransferase-related domain; cytidyltransferase-like protein complement(741860..742894) Acidovorax sp. JS42 4671187 YP_985022.1 CDS Ajs_0702 NC_008782.1 742950 743846 R KEGG: rpb:RPB_2359 hypothetical protein; hypothetical protein complement(742950..743846) Acidovorax sp. JS42 4671211 YP_985023.1 CDS Ajs_0703 NC_008782.1 743874 744059 R PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328; hypothetical protein complement(743874..744059) Acidovorax sp. JS42 4670761 YP_985024.1 CDS Ajs_0704 NC_008782.1 744190 744264 R hypothetical protein complement(744190..744264) Acidovorax sp. JS42 4671073 YP_985025.1 CDS Ajs_0705 NC_008782.1 744840 746021 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(744840..746021) Acidovorax sp. JS42 4671101 YP_985026.1 CDS Ajs_0706 NC_008782.1 746154 747029 D PFAM: lipid A biosynthesis acyltransferase; KEGG: rfr:Rfer_3881 putative acyltransferase; lipid A biosynthesis acyltransferase 746154..747029 Acidovorax sp. JS42 4671121 YP_985027.1 CDS Ajs_0707 NC_008782.1 747026 747898 D PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 747026..747898 Acidovorax sp. JS42 4670566 YP_985028.1 CDS Ajs_0708 NC_008782.1 747944 748873 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_0770 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(747944..748873) Acidovorax sp. JS42 4671168 YP_985029.1 CDS engB NC_008782.1 748922 749710 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(748922..749710) Acidovorax sp. JS42 4671230 YP_985030.1 CDS Ajs_0710 NC_008782.1 749729 750367 D PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I; class I cytochrome c 749729..750367 Acidovorax sp. JS42 4671840 YP_985031.1 CDS Ajs_0711 NC_008782.1 750536 752689 D PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like; ResB family protein 750536..752689 Acidovorax sp. JS42 4671572 YP_985032.1 CDS Ajs_0712 NC_008782.1 752686 754020 D PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein; cytochrome c assembly protein 752686..754020 Acidovorax sp. JS42 4671671 YP_985033.1 CDS Ajs_0713 NC_008782.1 754112 755110 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 754112..755110 Acidovorax sp. JS42 4671761 YP_985034.1 CDS Ajs_0714 NC_008782.1 755110 755769 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein 755110..755769 Acidovorax sp. JS42 4671796 YP_985035.1 CDS Ajs_0715 NC_008782.1 755836 756672 R PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A0043 beta-lactamase-like; beta-lactamase domain-containing protein complement(755836..756672) Acidovorax sp. JS42 4671799 YP_985036.1 CDS Ajs_0716 NC_008782.1 756737 758032 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(756737..758032) Acidovorax sp. JS42 4671897 YP_985037.1 CDS Ajs_0717 NC_008782.1 758029 758238 R hypothetical protein complement(758029..758238) Acidovorax sp. JS42 4671992 YP_985038.1 CDS Ajs_0718 NC_008782.1 758289 758882 R PFAM: Resolvase, N-terminal domain; KEGG: eci:UTI89_C0920 putative DNA-invertase; resolvase domain-containing protein complement(758289..758882) Acidovorax sp. JS42 4671927 YP_985039.1 CDS Ajs_0719 NC_008782.1 758978 760180 R PFAM: Zonular occludens toxin; KEGG: nme:NMB1626 hypothetical protein; zonular occludens toxin complement(758978..760180) Acidovorax sp. JS42 4672390 YP_985040.1 CDS Ajs_0720 NC_008782.1 760177 760476 R hypothetical protein complement(760177..760476) Acidovorax sp. JS42 4672433 YP_985041.1 CDS Ajs_0721 NC_008782.1 760473 761777 R KEGG: bps:BPSL3349 hypothetical protein; hypothetical protein complement(760473..761777) Acidovorax sp. JS42 4672515 YP_985042.1 CDS Ajs_0722 NC_008782.1 761952 762320 D hypothetical protein 761952..762320 Acidovorax sp. JS42 4672534 YP_985043.1 CDS Ajs_0723 NC_008782.1 762839 763147 R KEGG: ngo:NGO1270 conserved hypothetical protein, putative phage associated protein; putative phage associated protein complement(762839..763147) Acidovorax sp. JS42 4672873 YP_985044.1 CDS Ajs_0724 NC_008782.1 763180 764274 R PFAM: replication initiation factor; KEGG: nme:NMB1634 hypothetical protein; replication initiation factor complement(763180..764274) Acidovorax sp. JS42 4673045 YP_985045.1 CDS Ajs_0725 NC_008782.1 764839 765123 R hypothetical protein complement(764839..765123) Acidovorax sp. JS42 4673059 YP_985046.1 CDS Ajs_0726 NC_008782.1 765338 765865 R hypothetical protein complement(765338..765865) Acidovorax sp. JS42 4673168 YP_985047.1 CDS Ajs_0727 NC_008782.1 765868 766161 D hypothetical protein 765868..766161 Acidovorax sp. JS42 4673929 YP_985048.1 CDS Ajs_0728 NC_008782.1 766161 766490 D PFAM: Frataxin family protein; KEGG: rfr:Rfer_2917 frataxin-like; frataxin family protein 766161..766490 Acidovorax sp. JS42 4673194 YP_985049.1 CDS Ajs_0729 NC_008782.1 766566 768950 R KEGG: rfr:Rfer_2918 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(766566..768950) Acidovorax sp. JS42 4673408 YP_985050.1 CDS Ajs_0730 NC_008782.1 769214 770284 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 769214..770284 Acidovorax sp. JS42 4673515 YP_985051.1 CDS Ajs_0731 NC_008782.1 770281 770892 D PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly; fimbrial assembly family protein 770281..770892 Acidovorax sp. JS42 4673686 YP_985052.1 CDS Ajs_0732 NC_008782.1 770894 771568 D PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO; pilus assembly protein PilO 770894..771568 Acidovorax sp. JS42 4673752 YP_985053.1 CDS Ajs_0733 NC_008782.1 771565 772116 D PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ; pilus assembly protein, PilQ 771565..772116 Acidovorax sp. JS42 4673788 YP_985054.1 CDS Ajs_0734 NC_008782.1 772113 774203 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: rfr:Rfer_2923 type II and III secretion system protein; type IV pilus secretin PilQ 772113..774203 Acidovorax sp. JS42 4673838 YP_985055.1 CDS aroB NC_008782.1 774275 775378 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 774275..775378 Acidovorax sp. JS42 4673919 YP_985056.1 CDS Ajs_0736 NC_008782.1 775436 776608 D dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 775436..776608 Acidovorax sp. JS42 4673931 YP_985057.1 CDS Ajs_0737 NC_008782.1 776682 777245 D PFAM: protein of unknown function DUF1415; KEGG: rme:Rmet_0870 protein of unknown function DUF1415; hypothetical protein 776682..777245 Acidovorax sp. JS42 4673959 YP_985058.1 CDS Ajs_0738 NC_008782.1 777352 778173 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(777352..778173) Acidovorax sp. JS42 4674000 YP_985059.1 CDS Ajs_0739 NC_008782.1 778163 779695 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit complement(778163..779695) Acidovorax sp. JS42 4673708 YP_985060.1 CDS Ajs_0740 NC_008782.1 779743 780510 D PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 protein of unknown function DUF1568; hypothetical protein 779743..780510 Acidovorax sp. JS42 4673291 YP_985061.1 CDS Ajs_0741 NC_008782.1 780692 785425 D PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin); glutamate synthase (NADH) large subunit 780692..785425 Acidovorax sp. JS42 4673534 YP_985062.1 CDS gltD NC_008782.1 785489 786967 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 785489..786967 Acidovorax sp. JS42 4673386 YP_985063.1 CDS Ajs_0743 NC_008782.1 787198 788085 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_A3014 extracellular solute-binding protein, family 3; extracellular solute-binding protein 787198..788085 Acidovorax sp. JS42 4673339 YP_985064.1 CDS Ajs_0744 NC_008782.1 788263 788916 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2796 putative ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit 788263..788916 Acidovorax sp. JS42 4672907 YP_985065.1 CDS Ajs_0745 NC_008782.1 788897 789679 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2971 ABC transporter related; ABC transporter-like protein 788897..789679 Acidovorax sp. JS42 4672857 YP_985066.1 CDS Ajs_0746 NC_008782.1 789871 790833 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(789871..790833) Acidovorax sp. JS42 4672820 YP_985067.1 CDS Ajs_0747 NC_008782.1 790833 791243 R PFAM: S-adenosylmethionine decarboxylase related; KEGG: net:Neut_2465 S-adenosylmethionine decarboxylase-related protein; S-adenosylmethionine decarboxylase related complement(790833..791243) Acidovorax sp. JS42 4672342 YP_985068.1 CDS Ajs_0748 NC_008782.1 791607 792467 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related; ABC transporter-like protein 791607..792467 Acidovorax sp. JS42 4672219 YP_985069.1 CDS Ajs_0749 NC_008782.1 792464 793246 D PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140; hypothetical protein 792464..793246 Acidovorax sp. JS42 4672195 YP_985070.1 CDS Ajs_0750 NC_008782.1 793281 793766 D PFAM: Mammalian cell entry related domain protein; KEGG: rfr:Rfer_2937 mammalian cell entry related; hypothetical protein 793281..793766 Acidovorax sp. JS42 4672113 YP_985071.1 CDS Ajs_0751 NC_008782.1 793763 794515 D PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein; VacJ family lipoprotein 793763..794515 Acidovorax sp. JS42 4672065 YP_985072.1 CDS Ajs_0752 NC_008782.1 794694 795341 D PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_3630 toluene tolerance; toluene tolerance family protein 794694..795341 Acidovorax sp. JS42 4671747 YP_985073.1 CDS Ajs_0753 NC_008782.1 795372 795641 D KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS 795372..795641 Acidovorax sp. JS42 4671493 YP_985074.1 CDS Ajs_0754 NC_008782.1 795807 796895 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 795807..796895 Acidovorax sp. JS42 4671631 YP_985075.1 CDS Ajs_0755 NC_008782.1 797064 797981 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2941 ABC transporter related; ABC transporter-like protein 797064..797981 Acidovorax sp. JS42 4671036 YP_985076.1 CDS Ajs_0756 NC_008782.1 797978 798733 D PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2; ABC-2 type transporter 797978..798733 Acidovorax sp. JS42 4670925 YP_985077.1 CDS Ajs_0757 NC_008782.1 798735 798983 D PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein; BolA family protein 798735..798983 Acidovorax sp. JS42 4670527 YP_985078.1 CDS Ajs_0758 NC_008782.1 799175 800527 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 799175..800527 Acidovorax sp. JS42 4670804 YP_985079.1 CDS hisG NC_008782.1 800524 801174 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 800524..801174 Acidovorax sp. JS42 4670700 YP_985080.1 CDS hisD NC_008782.1 801339 802658 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 801339..802658 Acidovorax sp. JS42 4670582 YP_985081.1 CDS Ajs_0761 NC_008782.1 802824 803525 D KEGG: sus:Acid_7695 PilT protein domain protein; hypothetical protein 802824..803525 Acidovorax sp. JS42 4674478 YP_985082.1 CDS Ajs_0762 NC_008782.1 803564 804670 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 803564..804670 Acidovorax sp. JS42 4674500 YP_985083.1 CDS hisB NC_008782.1 804667 805299 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 804667..805299 Acidovorax sp. JS42 4674515 YP_985084.1 CDS hisH NC_008782.1 805350 806018 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 805350..806018 Acidovorax sp. JS42 4674523 YP_985085.1 CDS Ajs_0765 NC_008782.1 806044 806820 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 806044..806820 Acidovorax sp. JS42 4674535 YP_985086.1 CDS Ajs_0766 NC_008782.1 806827 808023 R KEGG: rso:RS01997 hypothetical signal peptide protein; hypothetical protein complement(806827..808023) Acidovorax sp. JS42 4674563 YP_985087.1 CDS Ajs_0767 NC_008782.1 808091 809464 R KEGG: rme:Rmet_4161 putative transmembrane protein; hypothetical protein complement(808091..809464) Acidovorax sp. JS42 4674580 YP_985088.1 CDS Ajs_0768 NC_008782.1 809464 810996 R PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_4160 glycosyl transferase, group 1; group 1 glycosyl transferase complement(809464..810996) Acidovorax sp. JS42 4674622 YP_985089.1 CDS Ajs_0769 NC_008782.1 810993 811994 R KEGG: rso:RSc2272 probable transmembrane protein; hypothetical protein complement(810993..811994) Acidovorax sp. JS42 4674653 YP_985090.1 CDS Ajs_0770 NC_008782.1 811987 813381 R KEGG: bxe:Bxe_A2972 putative transmembrane protein; hypothetical protein complement(811987..813381) Acidovorax sp. JS42 4674662 YP_985091.1 CDS Ajs_0771 NC_008782.1 813389 813943 R KEGG: rso:RSc2274 putative lipoprotein; putative lipoprotein complement(813389..813943) Acidovorax sp. JS42 4674679 YP_985092.1 CDS Ajs_0772 NC_008782.1 813965 817855 R PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein; hypothetical protein complement(813965..817855) Acidovorax sp. JS42 4674719 YP_985093.1 CDS Ajs_0773 NC_008782.1 817815 820646 R PFAM: polysaccharide deacetylase; KEGG: rso:RSc2276 putative signal peptide protein; polysaccharide deacetylase complement(817815..820646) Acidovorax sp. JS42 4674133 YP_985094.1 CDS Ajs_0774 NC_008782.1 820825 821835 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mfa:Mfla_2007 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 820825..821835 Acidovorax sp. JS42 4674063 YP_985095.1 CDS Ajs_0775 NC_008782.1 821876 822655 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 821876..822655 Acidovorax sp. JS42 4674099 YP_985096.1 CDS hisI NC_008782.1 822760 823158 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 822760..823158 Acidovorax sp. JS42 4674146 YP_985097.1 CDS hisE NC_008782.1 823165 823563 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 823165..823563 Acidovorax sp. JS42 4673887 YP_985098.1 CDS Ajs_0778 NC_008782.1 823563 823949 D KEGG: rfr:Rfer_2954 putative transmembrane protein; hypothetical protein 823563..823949 Acidovorax sp. JS42 4673827 YP_985099.1 CDS Ajs_0779 NC_008782.1 823942 824982 D PFAM: Patatin; KEGG: pol:Bpro_3621 patatin; patatin 823942..824982 Acidovorax sp. JS42 4673782 YP_985100.1 CDS Ajs_0780 NC_008782.1 825022 825381 D PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein; histidine triad (HIT) protein 825022..825381 Acidovorax sp. JS42 4673748 YP_985101.1 CDS tatA NC_008782.1 825484 825732 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 825484..825732 Acidovorax sp. JS42 4673270 YP_985102.1 CDS tatB NC_008782.1 825765 826244 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB; sec-independent translocase 825765..826244 Acidovorax sp. JS42 4673407 YP_985103.1 CDS Ajs_0783 NC_008782.1 826307 827095 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC; Sec-independent protein translocase TatC 826307..827095 Acidovorax sp. JS42 4673148 YP_985104.1 CDS Ajs_0784 NC_008782.1 827231 828370 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(827231..828370) Acidovorax sp. JS42 4673320 YP_985105.1 CDS Ajs_0785 NC_008782.1 828506 829849 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like; ferric reductase domain-containing protein complement(828506..829849) Acidovorax sp. JS42 4673088 YP_985106.1 CDS Ajs_0786 NC_008782.1 829990 830754 D PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34; hypothetical protein 829990..830754 Acidovorax sp. JS42 4673041 YP_985107.1 CDS Ajs_0787 NC_008782.1 830832 831887 D KEGG: rfr:Rfer_2962 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 830832..831887 Acidovorax sp. JS42 4673003 YP_985108.1 CDS mscL NC_008782.1 831963 832391 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(831963..832391) Acidovorax sp. JS42 4672874 YP_985109.1 CDS Ajs_0789 NC_008782.1 832526 833125 D KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 832526..833125 Acidovorax sp. JS42 4672457 YP_985110.1 CDS Ajs_0790 NC_008782.1 833141 834562 D PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like; cytochrome b/b6 domain-containing protein 833141..834562 Acidovorax sp. JS42 4672435 YP_985111.1 CDS Ajs_0791 NC_008782.1 834579 835334 D PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1; cytochrome c1 834579..835334 Acidovorax sp. JS42 4672350 YP_985112.1 CDS Ajs_0792 NC_008782.1 835430 836041 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_2967 glutathione S-transferase-like; glutathione S-transferase domain-containing protein 835430..836041 Acidovorax sp. JS42 4672230 YP_985113.1 CDS Ajs_0793 NC_008782.1 836065 836601 D PFAM: Stringent starvation protein B; KEGG: rfr:Rfer_2968 stringent starvation protein B; stringent starvation protein B 836065..836601 Acidovorax sp. JS42 4671485 YP_985114.1 CDS Ajs_0794 NC_008782.1 836844 837143 R KEGG: rfr:Rfer_2913 hypothetical protein; hypothetical protein complement(836844..837143) Acidovorax sp. JS42 4671809 YP_985115.1 CDS Ajs_0795 NC_008782.1 837194 838144 D PFAM: peptidase M23B; KEGG: rfr:Rfer_2912 peptidase M23B; peptidase M23B 837194..838144 Acidovorax sp. JS42 4671305 YP_985116.1 CDS Ajs_0796 NC_008782.1 838280 841033 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 838280..841033 Acidovorax sp. JS42 4671153 YP_985117.1 CDS argJ NC_008782.1 841134 842363 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 841134..842363 Acidovorax sp. JS42 4671118 YP_985118.1 CDS Ajs_0798 NC_008782.1 842418 843296 D PFAM: protein of unknown function DUF815; KEGG: rfr:Rfer_2909 protein of unknown function DUF815; hypothetical protein 842418..843296 Acidovorax sp. JS42 4671104 YP_985119.1 CDS Ajs_0799 NC_008782.1 843293 843739 D PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_2908 NUDIX hydrolase; NUDIX hydrolase 843293..843739 Acidovorax sp. JS42 4671069 YP_985120.1 CDS Ajs_0800 NC_008782.1 843808 844038 R PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329; hypothetical protein complement(843808..844038) Acidovorax sp. JS42 4671052 YP_985121.1 CDS Ajs_0801 NC_008782.1 844045 844800 R PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342; hypothetical protein complement(844045..844800) Acidovorax sp. JS42 4671000 YP_985122.1 CDS Ajs_0802 NC_008782.1 844891 845514 R KEGG: rfr:Rfer_2905 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(844891..845514) Acidovorax sp. JS42 4670783 YP_985123.1 CDS Ajs_0803 NC_008782.1 845516 846397 R PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rfr:Rfer_2904 prepilin peptidase; type 4 prepilin peptidase 1 complement(845516..846397) Acidovorax sp. JS42 4670649 YP_985124.1 CDS Ajs_0804 NC_008782.1 846397 847614 R PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein; type II secretion system protein complement(846397..847614) Acidovorax sp. JS42 4670601 YP_985125.1 CDS Ajs_0805 NC_008782.1 847635 849368 R KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; type IV-A pilus assembly ATPase PilB complement(847635..849368) Acidovorax sp. JS42 4671287 YP_985126.1 CDS Ajs_0806 NC_008782.1 849677 850765 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(849677..850765) Acidovorax sp. JS42 4670585 YP_985127.1 CDS Ajs_0807 NC_008782.1 851174 852145 D PFAM: phage integrase family protein; KEGG: psp:PSPPH_0099 shufflon-specific recombinase; phage integrase family protein 851174..852145 Acidovorax sp. JS42 4670811 YP_985128.1 CDS Ajs_0808 NC_008782.1 852387 854816 R KEGG: hhe:HH1029 hypothetical protein; hypothetical protein complement(852387..854816) Acidovorax sp. JS42 4671007 YP_985129.1 CDS Ajs_0809 NC_008782.1 854813 856525 R PFAM: protein of unknown function DUF262; KEGG: hhe:HH1030 hypothetical protein; hypothetical protein complement(854813..856525) Acidovorax sp. JS42 4671067 YP_985130.1 CDS Ajs_0810 NC_008782.1 856530 857519 R KEGG: vvu:VV20627 hypothetical protein; hypothetical protein complement(856530..857519) Acidovorax sp. JS42 4671092 YP_985131.1 CDS Ajs_0812 NC_008782.1 858831 859154 R hypothetical protein complement(858831..859154) Acidovorax sp. JS42 4671166 YP_985132.1 CDS Ajs_0813 NC_008782.1 859200 859586 R KEGG: rfr:Rfer_3053 hypothetical protein; hypothetical protein complement(859200..859586) Acidovorax sp. JS42 4671198 YP_985133.1 CDS Ajs_0814 NC_008782.1 859583 860401 R KEGG: sdn:Sden_1113 hypothetical protein; hypothetical protein complement(859583..860401) Acidovorax sp. JS42 4671459 YP_985134.1 CDS Ajs_0815 NC_008782.1 860555 860752 R hypothetical protein complement(860555..860752) Acidovorax sp. JS42 4671893 YP_985135.1 CDS Ajs_0816 NC_008782.1 860849 861205 D hypothetical protein 860849..861205 Acidovorax sp. JS42 4671446 YP_985136.1 CDS Ajs_0817 NC_008782.1 861284 862336 R PFAM: Silent information regulator protein Sir2; KEGG: bpm:BURPS1710b_3116 transcriptional regulator, Sir2 family; silent information regulator protein Sir2 complement(861284..862336) Acidovorax sp. JS42 4671299 YP_985137.1 CDS Ajs_0819 NC_008782.1 862937 863497 R hypothetical protein complement(862937..863497) Acidovorax sp. JS42 4671208 YP_985138.1 CDS Ajs_0820 NC_008782.1 863497 863796 D hypothetical protein 863497..863796 Acidovorax sp. JS42 4671194 YP_985139.1 CDS Ajs_0821 NC_008782.1 863779 864744 R hypothetical protein complement(863779..864744) Acidovorax sp. JS42 4671757 YP_985140.1 CDS Ajs_0822 NC_008782.1 864799 865080 D hypothetical protein 864799..865080 Acidovorax sp. JS42 4671504 YP_985141.1 CDS Ajs_0823 NC_008782.1 865077 865787 D PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase; metallophosphoesterase 865077..865787 Acidovorax sp. JS42 4674210 YP_985142.1 CDS Ajs_0824 NC_008782.1 865756 866028 D hypothetical protein 865756..866028 Acidovorax sp. JS42 4671943 YP_985143.1 CDS Ajs_0825 NC_008782.1 866414 867232 R KEGG: nar:Saro_0358 putative restriction endonuclease; hypothetical protein complement(866414..867232) Acidovorax sp. JS42 4671867 YP_985144.1 CDS Ajs_0826 NC_008782.1 867344 868051 R KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III; DNA ligase III-like protein complement(867344..868051) Acidovorax sp. JS42 4672114 YP_985145.1 CDS Ajs_0827 NC_008782.1 868057 868584 R KEGG: rpb:RPB_2980 hypothetical protein; hypothetical protein complement(868057..868584) Acidovorax sp. JS42 4672357 YP_985146.1 CDS Ajs_0828 NC_008782.1 868581 869978 R KEGG: rpb:RPB_2979 hypothetical protein; hypothetical protein complement(868581..869978) Acidovorax sp. JS42 4672405 YP_985147.1 CDS Ajs_0829 NC_008782.1 870052 871635 R KEGG: gox:GOX1506 putative chromosome segregation SMC protein; chromosome segregation ATPase-like protein complement(870052..871635) Acidovorax sp. JS42 4672436 YP_985148.1 CDS Ajs_0830 NC_008782.1 871648 872469 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(871648..872469) Acidovorax sp. JS42 4672046 YP_985149.1 CDS Ajs_0831 NC_008782.1 872459 873991 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit complement(872459..873991) Acidovorax sp. JS42 4672587 YP_985150.1 CDS Ajs_0832 NC_008782.1 874052 874993 R SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family; DEAD-like helicases-like complement(874052..874993) Acidovorax sp. JS42 4672588 YP_985151.1 CDS Ajs_0833 NC_008782.1 875015 880312 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; DEAD/DEAH box helicase domain-containing protein complement(875015..880312) Acidovorax sp. JS42 4672497 YP_985152.1 CDS Ajs_0834 NC_008782.1 880327 881367 R PFAM: filamentation induced by cAMP protein Fic; KEGG: bbr:BB0907 hypothetical protein; filamentation induced by cAMP protein Fic complement(880327..881367) Acidovorax sp. JS42 4672523 YP_985153.1 CDS Ajs_0835 NC_008782.1 881907 882671 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(881907..882671) Acidovorax sp. JS42 4672994 YP_985154.1 CDS Ajs_0836 NC_008782.1 882668 884263 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(882668..884263) Acidovorax sp. JS42 4672737 YP_985155.1 CDS Ajs_0837 NC_008782.1 884366 884896 D hypothetical protein 884366..884896 Acidovorax sp. JS42 4673067 YP_985156.1 CDS Ajs_0838 NC_008782.1 885127 886035 R PFAM: plasmid encoded RepA protein; KEGG: xac:XAC2441 replication protein; plasmid encoded RepA protein complement(885127..886035) Acidovorax sp. JS42 4673188 YP_985157.1 CDS Ajs_0839 NC_008782.1 886444 886782 R hypothetical protein complement(886444..886782) Acidovorax sp. JS42 4673998 YP_985158.1 CDS Ajs_0840 NC_008782.1 887111 888094 R PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase; dimethylallyltranstransferase complement(887111..888094) Acidovorax sp. JS42 4673606 YP_985159.1 CDS rplU NC_008782.1 888268 888579 D PFAM: ribosomal protein L21; KEGG: rfr:Rfer_1268 ribosomal protein L21; 50S ribosomal protein L21 888268..888579 Acidovorax sp. JS42 4673783 YP_985160.1 CDS rpmA NC_008782.1 888595 888852 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 888595..888852 Acidovorax sp. JS42 4673318 YP_985161.1 CDS obgE NC_008782.1 888934 890073 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 888934..890073 Acidovorax sp. JS42 4673943 YP_985162.1 CDS Ajs_0844 NC_008782.1 890147 891289 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 890147..891289 Acidovorax sp. JS42 4673260 YP_985163.1 CDS Ajs_0845 NC_008782.1 891336 892025 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(891336..892025) Acidovorax sp. JS42 4673881 YP_985164.1 CDS Ajs_0846 NC_008782.1 892116 893861 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 892116..893861 Acidovorax sp. JS42 4673850 YP_985165.1 CDS Ajs_0847 NC_008782.1 893882 894538 D PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 893882..894538 Acidovorax sp. JS42 4673900 YP_985166.1 CDS Ajs_0848 NC_008782.1 894625 895941 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sdy:SDY_4455 putative transport protein; hypothetical protein complement(894625..895941) Acidovorax sp. JS42 4674147 YP_985167.1 CDS Ajs_0849 NC_008782.1 896120 896449 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rfr:Rfer_1276 glutaredoxin-related protein; glutaredoxin-like protein complement(896120..896449) Acidovorax sp. JS42 4674554 YP_985168.1 CDS Ajs_0850 NC_008782.1 896504 897346 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1279 modification methylase, HemK family; HemK family modification methylase complement(896504..897346) Acidovorax sp. JS42 4674513 YP_985169.1 CDS prfA NC_008782.1 897404 898507 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(897404..898507) Acidovorax sp. JS42 4674475 YP_985170.1 CDS hemA NC_008782.1 898621 899931 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(898621..899931) Acidovorax sp. JS42 4674150 YP_985171.1 CDS Ajs_0853 NC_008782.1 900006 900284 D KEGG: rfr:Rfer_1282 hypothetical protein; hypothetical protein 900006..900284 Acidovorax sp. JS42 4674320 YP_985172.1 CDS Ajs_0854 NC_008782.1 900286 901188 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A3360 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(900286..901188) Acidovorax sp. JS42 4673640 YP_985173.1 CDS Ajs_0855 NC_008782.1 901231 902292 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A3359 hypothetical protein; hypothetical protein 901231..902292 Acidovorax sp. JS42 4673632 YP_985174.1 CDS Ajs_0856 NC_008782.1 902303 903196 D PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_3507 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 902303..903196 Acidovorax sp. JS42 4673542 YP_985175.1 CDS Ajs_0857 NC_008782.1 903269 905791 R PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein; mechanosensitive ion channel protein MscS complement(903269..905791) Acidovorax sp. JS42 4673513 YP_985176.1 CDS Ajs_0858 NC_008782.1 905890 906639 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_0853 glycerophosphodiester phosphodiesterase; glycerophosphodiester phosphodiesterase complement(905890..906639) Acidovorax sp. JS42 4673511 YP_985177.1 CDS Ajs_0859 NC_008782.1 906665 907672 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1284 ABC transporter related; ABC transporter-like protein complement(906665..907672) Acidovorax sp. JS42 4673265 YP_985178.1 CDS Ajs_0860 NC_008782.1 907736 908584 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0855 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(907736..908584) Acidovorax sp. JS42 4673173 YP_985179.1 CDS Ajs_0861 NC_008782.1 908587 909468 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0856 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(908587..909468) Acidovorax sp. JS42 4673349 YP_985180.1 CDS Ajs_0862 NC_008782.1 909599 910912 R PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0857 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(909599..910912) Acidovorax sp. JS42 4672719 YP_985181.1 CDS Ajs_0863 NC_008782.1 911149 912453 D PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pae:PA0316 D-3-phosphoglycerate dehydrogenase; D-3-phosphoglycerate dehydrogenase 911149..912453 Acidovorax sp. JS42 4672682 YP_985182.1 CDS Ajs_0864 NC_008782.1 912646 916569 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 912646..916569 Acidovorax sp. JS42 4672483 YP_985183.1 CDS Ajs_0865 NC_008782.1 916566 917057 D PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein; histidine triad (HIT) protein 916566..917057 Acidovorax sp. JS42 4672792 YP_985184.1 CDS Ajs_0866 NC_008782.1 917221 917637 D PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 protein of unknown function DUF971; hypothetical protein 917221..917637 Acidovorax sp. JS42 4672766 YP_985185.1 CDS Ajs_0867 NC_008782.1 917762 918493 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1291 ubiquinone/menaquinone biosynthesis methyltransferases; ubiquinone/menaquinone biosynthesis methyltransferase 917762..918493 Acidovorax sp. JS42 4672366 YP_985186.1 CDS Ajs_0868 NC_008782.1 918532 919539 D PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 918532..919539 Acidovorax sp. JS42 4672017 YP_985187.1 CDS Ajs_0869 NC_008782.1 919620 920198 D KEGG: rfr:Rfer_1293 hypothetical protein; hypothetical protein 919620..920198 Acidovorax sp. JS42 4672010 YP_985188.1 CDS ubiB NC_008782.1 920195 921760 D an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB 920195..921760 Acidovorax sp. JS42 4672233 YP_985189.1 CDS Ajs_0871 NC_008782.1 921799 923247 D PFAM: Na+/solute symporter; KEGG: rso:RSc0463 probable sodium/solute symporter transmembrane protein; Na+/solute symporter 921799..923247 Acidovorax sp. JS42 4672164 YP_985190.1 CDS Ajs_0872 NC_008782.1 923278 923595 D TIGRFAM: putative regulatory protein, FmdB family; KEGG: rso:RSc0464 hypothetical protein; FmdB family regulatory protein 923278..923595 Acidovorax sp. JS42 4671404 YP_985191.1 CDS Ajs_0873 NC_008782.1 923611 924234 D PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502; hypothetical protein 923611..924234 Acidovorax sp. JS42 4671655 YP_985192.1 CDS aspS NC_008782.1 924327 926138 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 924327..926138 Acidovorax sp. JS42 4671310 YP_985193.1 CDS Ajs_0875 NC_008782.1 926235 927038 D KEGG: xcb:XC_0710 hypothetical protein; hypothetical protein 926235..927038 Acidovorax sp. JS42 4671551 YP_985194.1 CDS Ajs_0876 NC_008782.1 927049 927519 D PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1298 NUDIX hydrolase; NUDIX hydrolase 927049..927519 Acidovorax sp. JS42 4671528 YP_985195.1 CDS Ajs_0877 NC_008782.1 927516 928283 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_1299 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 927516..928283 Acidovorax sp. JS42 4671035 YP_985196.1 CDS Ajs_0878 NC_008782.1 928288 929517 D PFAM: phospholipase D/Transphosphatidylase; KEGG: rfr:Rfer_1300 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 928288..929517 Acidovorax sp. JS42 4670552 YP_985197.1 CDS Ajs_0879 NC_008782.1 929645 930370 D PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I; GTP cyclohydrolase 929645..930370 Acidovorax sp. JS42 4670538 YP_985198.1 CDS Ajs_0880 NC_008782.1 930374 930796 D PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD; BLUF domain-containing protein 930374..930796 Acidovorax sp. JS42 4670832 YP_985199.1 CDS Ajs_0881 NC_008782.1 931017 931928 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: bbr:BB3444 hypothetical protein; hypothetical protein 931017..931928 Acidovorax sp. JS42 4670828 YP_985200.1 CDS Ajs_0882 NC_008782.1 931990 932808 D KEGG: rfr:Rfer_1303 hypothetical protein; hypothetical protein 931990..932808 Acidovorax sp. JS42 4670794 YP_985201.1 CDS Ajs_0883 NC_008782.1 932798 933484 R KEGG: mfa:Mfla_1735 hypothetical protein; hypothetical protein complement(932798..933484) Acidovorax sp. JS42 4670709 YP_985202.1 CDS Ajs_0884 NC_008782.1 933560 934171 R KEGG: rfr:Rfer_3472 hypothetical protein; hypothetical protein complement(933560..934171) Acidovorax sp. JS42 4674725 YP_985203.1 CDS Ajs_0885 NC_008782.1 934301 934957 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB4942 hypothetical protein; lysine exporter protein LysE/YggA 934301..934957 Acidovorax sp. JS42 4671268 YP_985204.1 CDS Ajs_0886 NC_008782.1 935024 936427 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(935024..936427) Acidovorax sp. JS42 4671311 YP_985205.1 CDS Ajs_0887 NC_008782.1 936531 938021 R PFAM: extracellular solute-binding protein, family 5; KEGG: bja:blr3234 ABC transporter substrate-binding protein; extracellular solute-binding protein complement(936531..938021) Acidovorax sp. JS42 4670652 YP_985206.1 CDS Ajs_0888 NC_008782.1 938120 938977 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3233 ABC transporter ATP-binding protein; ABC transporter-like protein complement(938120..938977) Acidovorax sp. JS42 4670659 YP_985207.1 CDS Ajs_0889 NC_008782.1 938974 939978 R KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(938974..939978) Acidovorax sp. JS42 4670745 YP_985208.1 CDS Ajs_0890 NC_008782.1 939975 940850 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(939975..940850) Acidovorax sp. JS42 4670803 YP_985209.1 CDS Ajs_0891 NC_008782.1 940847 941857 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3230 ABC transporter permease protein; binding-protein-dependent transport systems inner membrane component complement(940847..941857) Acidovorax sp. JS42 4670909 YP_985210.1 CDS Ajs_0892 NC_008782.1 941985 942242 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 941985..942242 Acidovorax sp. JS42 4670917 YP_985211.1 CDS Ajs_0893 NC_008782.1 942306 942941 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(942306..942941) Acidovorax sp. JS42 4670972 YP_985212.1 CDS Ajs_0894 NC_008782.1 943076 943702 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(943076..943702) Acidovorax sp. JS42 4671002 YP_985213.1 CDS Ajs_0895 NC_008782.1 943856 944821 R KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; Fis family transcriptional regulator complement(943856..944821) Acidovorax sp. JS42 4671062 YP_985214.1 CDS ipk NC_008782.1 944987 945838 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(944987..945838) Acidovorax sp. JS42 4671085 YP_985215.1 CDS Ajs_0897 NC_008782.1 945848 946363 R KEGG: pol:Bpro_1295 putative lipoprotein; putative lipoprotein complement(945848..946363) Acidovorax sp. JS42 4671106 YP_985216.1 CDS Ajs_0898 NC_008782.1 946360 948159 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4; hypothetical protein complement(946360..948159) Acidovorax sp. JS42 4671124 YP_985217.1 CDS Ajs_0899 NC_008782.1 948189 949004 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 948189..949004 Acidovorax sp. JS42 4671133 YP_985218.1 CDS Ajs_0900 NC_008782.1 949098 951080 D KEGG: pol:Bpro_1298 hypothetical protein; hypothetical protein 949098..951080 Acidovorax sp. JS42 4671138 YP_985219.1 CDS Ajs_0901 NC_008782.1 951077 952150 D KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific DNA-adenine glycosylase 951077..952150 Acidovorax sp. JS42 4670570 YP_985220.1 CDS Ajs_0902 NC_008782.1 952261 953124 R PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: rfr:Rfer_1653 uncharacterised P-loop ATPase protein UPF0042; hypothetical protein complement(952261..953124) Acidovorax sp. JS42 4671167 YP_985221.1 CDS Ajs_0903 NC_008782.1 953128 954792 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rfr:Rfer_1652 DNA repair protein RecN; DNA repair protein RecN complement(953128..954792) Acidovorax sp. JS42 4671179 YP_985222.1 CDS ppnK NC_008782.1 954795 955691 R catalyzes the phosphorylation of NAD to NADP; NAD(+)/NADH kinase family protein complement(954795..955691) Acidovorax sp. JS42 4671215 YP_985223.1 CDS hrcA NC_008782.1 955720 956724 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 955720..956724 Acidovorax sp. JS42 4671192 YP_985224.1 CDS Ajs_0906 NC_008782.1 957985 958308 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911; transposase IS3/IS911 family protein 957985..958308 Acidovorax sp. JS42 4671246 YP_985225.1 CDS Ajs_0907 NC_008782.1 958305 959219 D PFAM: Integrase, catalytic region; KEGG: neu:NE1271 integrase, catalytic core; integrase catalytic subunit 958305..959219 Acidovorax sp. JS42 4671938 YP_985226.1 CDS Ajs_0908 NC_008782.1 959306 960250 D KEGG: eba:ebA89 hypothetical protein; hypothetical protein 959306..960250 Acidovorax sp. JS42 4671892 YP_985227.1 CDS Ajs_0909 NC_008782.1 960160 961239 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(960160..961239) Acidovorax sp. JS42 4671348 YP_985228.1 CDS Ajs_0910 NC_008782.1 961319 961702 D KEGG: eba:ebA89 hypothetical protein; hypothetical protein 961319..961702 Acidovorax sp. JS42 4671291 YP_985229.1 CDS Ajs_0911 NC_008782.1 961715 962617 R KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein complement(961715..962617) Acidovorax sp. JS42 4671281 YP_985230.1 CDS Ajs_0912 NC_008782.1 962614 963237 R KEGG: xom:XOO_2998 hypothetical protein; hypothetical protein complement(962614..963237) Acidovorax sp. JS42 4671232 YP_985231.1 CDS Ajs_0914 NC_008782.1 963938 965164 D PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 963938..965164 Acidovorax sp. JS42 4671184 YP_985232.1 CDS Ajs_0916 NC_008782.1 966008 966529 D KEGG: sma:SAV307 hypothetical protein; hypothetical protein 966008..966529 Acidovorax sp. JS42 4671678 YP_985233.1 CDS Ajs_0917 NC_008782.1 966891 967499 D KEGG: bpm:BURPS1710b_A1367 hypothetical protein; hypothetical protein 966891..967499 Acidovorax sp. JS42 4671732 YP_985234.1 CDS Ajs_0918 NC_008782.1 967509 968093 D PFAM: isochorismatase hydrolase; KEGG: sus:Acid_6920 isochorismatase hydrolase; isochorismatase hydrolase 967509..968093 Acidovorax sp. JS42 4671784 YP_985235.1 CDS Ajs_0919 NC_008782.1 968112 968579 D KEGG: reu:Reut_A3332 hypothetical protein; hypothetical protein 968112..968579 Acidovorax sp. JS42 4671801 YP_985236.1 CDS Ajs_0920 NC_008782.1 968674 969006 D KEGG: pol:Bpro_1343 hypothetical protein; hypothetical protein 968674..969006 Acidovorax sp. JS42 4671810 YP_985237.1 CDS Ajs_0921 NC_008782.1 969087 970331 R KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase complement(969087..970331) Acidovorax sp. JS42 4671816 YP_985238.1 CDS Ajs_0922 NC_008782.1 970424 971041 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(970424..971041) Acidovorax sp. JS42 4671820 YP_985239.1 CDS Ajs_0923 NC_008782.1 971087 971821 R KEGG: pol:Bpro_1339 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH complement(971087..971821) Acidovorax sp. JS42 4671832 YP_985240.1 CDS Ajs_0924 NC_008782.1 971898 972800 R PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein complement(971898..972800) Acidovorax sp. JS42 4671863 YP_985241.1 CDS Ajs_0925 NC_008782.1 972797 973813 R PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase; serine/threonine protein kinase complement(972797..973813) Acidovorax sp. JS42 4671865 YP_985242.1 CDS Ajs_0926 NC_008782.1 973895 974803 D PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rfr:Rfer_1626 conserved hypothetical protein 255; hypothetical protein 973895..974803 Acidovorax sp. JS42 4672521 YP_985243.1 CDS Ajs_0927 NC_008782.1 974991 976268 D PFAM: phage integrase family protein; KEGG: nmu:Nmul_A0064 phage integrase; phage integrase family protein 974991..976268 Acidovorax sp. JS42 4672053 YP_985244.1 CDS Ajs_0928 NC_008782.1 976265 976981 D hypothetical protein 976265..976981 Acidovorax sp. JS42 4671952 YP_985245.1 CDS Ajs_0929 NC_008782.1 977050 977286 D PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A0062 putative transcriptional regulator; phage transcriptional regulator AlpA 977050..977286 Acidovorax sp. JS42 4671904 YP_985246.1 CDS Ajs_0930 NC_008782.1 977517 978407 D KEGG: tbd:Tbd_2069 hypothetical protein; hypothetical protein 977517..978407 Acidovorax sp. JS42 4672104 YP_985247.1 CDS Ajs_0931 NC_008782.1 978404 979816 D KEGG: tbd:Tbd_2068 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; replicative DNA helicase 978404..979816 Acidovorax sp. JS42 4671845 YP_985248.1 CDS Ajs_0932 NC_008782.1 979806 980600 D SMART: helix-turn-helix domain protein; XRE family transcriptional regulator 979806..980600 Acidovorax sp. JS42 4672132 YP_985249.1 CDS Ajs_0933 NC_008782.1 980597 981748 D hypothetical protein 980597..981748 Acidovorax sp. JS42 4672171 YP_985250.1 CDS Ajs_0934 NC_008782.1 981691 982053 R hypothetical protein complement(981691..982053) Acidovorax sp. JS42 4672254 YP_985251.1 CDS Ajs_0935 NC_008782.1 982077 982328 D hypothetical protein 982077..982328 Acidovorax sp. JS42 4672270 YP_985252.1 CDS Ajs_0936 NC_008782.1 982405 983070 D hypothetical protein 982405..983070 Acidovorax sp. JS42 4672292 YP_985253.1 CDS Ajs_0937 NC_008782.1 983385 984230 D hypothetical protein 983385..984230 Acidovorax sp. JS42 4672354 YP_985254.1 CDS Ajs_0938 NC_008782.1 984227 985144 D hypothetical protein 984227..985144 Acidovorax sp. JS42 4672371 YP_985255.1 CDS Ajs_0939 NC_008782.1 985362 985940 D KEGG: eci:UTI89_C2655 hypothetical protein; hypothetical protein 985362..985940 Acidovorax sp. JS42 4672406 YP_985256.1 CDS Ajs_0940 NC_008782.1 986652 986984 R hypothetical protein complement(986652..986984) Acidovorax sp. JS42 4672039 YP_985257.1 CDS Ajs_0941 NC_008782.1 986965 987243 R hypothetical protein complement(986965..987243) Acidovorax sp. JS42 4672412 YP_985258.1 CDS Ajs_0942 NC_008782.1 987240 987596 R hypothetical protein complement(987240..987596) Acidovorax sp. JS42 4672419 YP_985259.1 CDS Ajs_0943 NC_008782.1 987709 987915 D KEGG: dar:Daro_2702 hypothetical protein; hypothetical protein 987709..987915 Acidovorax sp. JS42 4672044 YP_985260.1 CDS Ajs_0944 NC_008782.1 987930 988235 D hypothetical protein 987930..988235 Acidovorax sp. JS42 4672450 YP_985261.1 CDS Ajs_0945 NC_008782.1 988266 988619 D KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; RelE-like cytotoxic translational repressor of toxin-antitoxin stability system 988266..988619 Acidovorax sp. JS42 4672466 YP_985262.1 CDS Ajs_0946 NC_008782.1 988616 988900 D PFAM: helix-turn-helix domain protein; KEGG: bpa:BPP2999 putative DNA-binding protein; helix-turn-helix domain-containing protein 988616..988900 Acidovorax sp. JS42 4672553 YP_985263.1 CDS gmk NC_008782.1 989060 989680 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 989060..989680 Acidovorax sp. JS42 4671993 YP_985264.1 CDS Ajs_0948 NC_008782.1 989696 989899 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 989696..989899 Acidovorax sp. JS42 4672471 YP_985265.1 CDS Ajs_0949 NC_008782.1 990001 992265 D KEGG: rfr:Rfer_3149 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 990001..992265 Acidovorax sp. JS42 4673198 YP_985266.1 CDS Ajs_0950 NC_008782.1 992279 992839 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor; transcription elongation factor GreB complement(992279..992839) Acidovorax sp. JS42 4672558 YP_985267.1 CDS Ajs_0951 NC_008782.1 993141 993413 R hypothetical protein complement(993141..993413) Acidovorax sp. JS42 4672491 YP_985268.1 CDS rpsO NC_008782.1 993663 993929 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 993663..993929 Acidovorax sp. JS42 4672886 YP_985269.1 CDS Ajs_0953 NC_008782.1 994145 996328 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: rfr:Rfer_1489 3' exoribonuclease; polynucleotide phosphorylase/polyadenylase 994145..996328 Acidovorax sp. JS42 4672949 YP_985270.1 CDS Ajs_0954 NC_008782.1 996428 997432 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1490 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 996428..997432 Acidovorax sp. JS42 4673004 YP_985271.1 CDS tpiA NC_008782.1 997429 998181 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 997429..998181 Acidovorax sp. JS42 4673025 YP_985272.1 CDS Ajs_0956 NC_008782.1 998220 998600 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit; protein translocase subunit secG 998220..998600 Acidovorax sp. JS42 4673037 YP_985273.1 CDS Ajs_0957 NC_008782.1 998890 999249 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 998890..999249 Acidovorax sp. JS42 4673060 YP_985274.1 CDS Ajs_0958 NC_008782.1 999274 999753 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 999274..999753 Acidovorax sp. JS42 4673082 YP_985275.1 CDS Ajs_0959 NC_008782.1 999764 1000372 D KEGG: rfr:Rfer_1495 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 999764..1000372 Acidovorax sp. JS42 4673101 YP_985276.1 CDS Ajs_0960 NC_008782.1 1000399 1001652 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1000399..1001652 Acidovorax sp. JS42 4673177 YP_985277.1 CDS Ajs_0961 NC_008782.1 1001649 1002140 D KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1001649..1002140 Acidovorax sp. JS42 4673115 YP_985278.1 CDS Ajs_0962 NC_008782.1 1002137 1003498 D KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1002137..1003498 Acidovorax sp. JS42 4673879 YP_985279.1 CDS Ajs_0963 NC_008782.1 1003514 1005661 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1003514..1005661 Acidovorax sp. JS42 4673925 YP_985280.1 CDS Ajs_0964 NC_008782.1 1005658 1006734 D PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase subunit 1 1005658..1006734 Acidovorax sp. JS42 4673861 YP_985281.1 CDS Ajs_0965 NC_008782.1 1006747 1007259 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1006747..1007259 Acidovorax sp. JS42 4673207 YP_985282.1 CDS Ajs_0966 NC_008782.1 1007304 1007972 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1007304..1007972 Acidovorax sp. JS42 4673367 YP_985283.1 CDS Ajs_0967 NC_008782.1 1007969 1008277 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rfr:Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1007969..1008277 Acidovorax sp. JS42 4673113 YP_985284.1 CDS Ajs_0968 NC_008782.1 1008309 1010327 D KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1008309..1010327 Acidovorax sp. JS42 4673396 YP_985285.1 CDS Ajs_0969 NC_008782.1 1010341 1011816 D KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1010341..1011816 Acidovorax sp. JS42 4673424 YP_985286.1 CDS Ajs_0970 NC_008782.1 1011841 1013334 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1011841..1013334 Acidovorax sp. JS42 4673480 YP_985287.1 CDS Ajs_0971 NC_008782.1 1013353 1013676 D KEGG: pol:Bpro_3242 putative transmembrane protein; hypothetical protein 1013353..1013676 Acidovorax sp. JS42 4673679 YP_985288.1 CDS Ajs_0972 NC_008782.1 1013683 1014150 D PFAM: protein of unknown function DUF1178; KEGG: rfr:Rfer_1508 protein of unknown function DUF1178; hypothetical protein 1013683..1014150 Acidovorax sp. JS42 4673746 YP_985289.1 CDS Ajs_0973 NC_008782.1 1014202 1016004 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter-like protein complement(1014202..1016004) Acidovorax sp. JS42 4673759 YP_985290.1 CDS Ajs_0974 NC_008782.1 1016035 1016403 R hypothetical protein complement(1016035..1016403) Acidovorax sp. JS42 4673760 YP_985291.1 CDS Ajs_0975 NC_008782.1 1016452 1017057 D KEGG: rfr:Rfer_3383 ABC transporter related; ABC-type transport system involved in cytochrome c biogenesis ATPase component-like protein 1016452..1017057 Acidovorax sp. JS42 4673771 YP_985292.1 CDS Ajs_0976 NC_008782.1 1017101 1017730 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfo:Pfl_2160 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1017101..1017730 Acidovorax sp. JS42 4673787 YP_985293.1 CDS Ajs_0977 NC_008782.1 1017794 1019137 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(1017794..1019137) Acidovorax sp. JS42 4673794 YP_985294.1 CDS Ajs_0978 NC_008782.1 1019468 1021441 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(1019468..1021441) Acidovorax sp. JS42 4673802 YP_985295.1 CDS Ajs_0979 NC_008782.1 1021485 1021736 R PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen; 17 kDa surface antigen complement(1021485..1021736) Acidovorax sp. JS42 4673819 YP_985296.1 CDS Ajs_0980 NC_008782.1 1021950 1022612 D KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein); DedA protein (DSG-1 protein) 1021950..1022612 Acidovorax sp. JS42 4673824 YP_985297.1 CDS Ajs_0981 NC_008782.1 1022685 1022993 D hypothetical protein 1022685..1022993 Acidovorax sp. JS42 4673839 YP_985298.1 CDS Ajs_0982 NC_008782.1 1023072 1023404 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rme:Rmet_5777 cupin 2, conserved barrel; cupin 2 domain-containing protein complement(1023072..1023404) Acidovorax sp. JS42 4673841 YP_985299.1 CDS Ajs_0983 NC_008782.1 1023439 1024887 R PFAM: cell wall hydrolase/autolysin; KEGG: rfr:Rfer_3303 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(1023439..1024887) Acidovorax sp. JS42 4674005 YP_985300.1 CDS Ajs_0985 NC_008782.1 1025376 1026461 D TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding; putative iron-sulfur cluster-binding protein 1025376..1026461 Acidovorax sp. JS42 4674109 YP_985301.1 CDS Ajs_0986 NC_008782.1 1026516 1027433 R PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2655 auxin efflux carrier; auxin efflux carrier complement(1026516..1027433) Acidovorax sp. JS42 4674088 YP_985302.1 CDS Ajs_0987 NC_008782.1 1027585 1028547 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065; hypothetical protein 1027585..1028547 Acidovorax sp. JS42 4674009 YP_985303.1 CDS Ajs_0988 NC_008782.1 1028604 1029515 D TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD; tyrosine recombinase XerD 1028604..1029515 Acidovorax sp. JS42 4674715 YP_985304.1 CDS Ajs_0989 NC_008782.1 1029595 1030572 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0026 uncharacterized protein UPF0065; hypothetical protein 1029595..1030572 Acidovorax sp. JS42 4674597 YP_985305.1 CDS Ajs_0990 NC_008782.1 1030623 1031918 R PFAM: EAL domain protein; HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase complement(1030623..1031918) Acidovorax sp. JS42 4674635 YP_985306.1 CDS Ajs_0991 NC_008782.1 1031969 1033240 R PFAM: EAL domain protein; HDOD; KEGG: cvi:CV3451 putative signal transduction protein containing EAL and modified HD-GYP domains; diguanylate phosphodiesterase complement(1031969..1033240) Acidovorax sp. JS42 4674576 YP_985307.1 CDS Ajs_0992 NC_008782.1 1033388 1034194 R PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455; hypothetical protein complement(1033388..1034194) Acidovorax sp. JS42 4674552 YP_985308.1 CDS Ajs_0993 NC_008782.1 1034244 1034768 D KEGG: rfr:Rfer_2653 transferase hexapeptide protein; transferase hexapeptide protein 1034244..1034768 Acidovorax sp. JS42 4674506 YP_985309.1 CDS Ajs_0994 NC_008782.1 1034780 1035787 D PFAM: Hsp33 protein; KEGG: rfr:Rfer_2652 HSP33 protein; Hsp33 protein 1034780..1035787 Acidovorax sp. JS42 4674481 YP_985310.1 CDS Ajs_0995 NC_008782.1 1035880 1036344 R KEGG: pol:Bpro_3186 hypothetical protein; hypothetical protein complement(1035880..1036344) Acidovorax sp. JS42 4674421 YP_985311.1 CDS Ajs_0996 NC_008782.1 1036341 1036625 R PFAM: Septum formation initiator; KEGG: rfr:Rfer_2651 septum formation initiator; cell division protein FtsB complement(1036341..1036625) Acidovorax sp. JS42 4674387 YP_985312.1 CDS eno NC_008782.1 1036652 1037938 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1036652..1037938) Acidovorax sp. JS42 4674385 YP_985313.1 CDS Ajs_0999 NC_008782.1 1038317 1039174 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1038317..1039174) Acidovorax sp. JS42 4674136 YP_985314.1 CDS pyrG NC_008782.1 1039190 1040848 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1039190..1040848) Acidovorax sp. JS42 4674306 YP_985315.1 CDS Ajs_1001 NC_008782.1 1040940 1042160 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase 1040940..1042160 Acidovorax sp. JS42 4674270 YP_985316.1 CDS dut NC_008782.1 1042258 1042704 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1042258..1042704 Acidovorax sp. JS42 4674279 YP_985317.1 CDS Ajs_1003 NC_008782.1 1042870 1043367 D PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen; 17 kDa surface antigen 1042870..1043367 Acidovorax sp. JS42 4674195 YP_985318.1 CDS Ajs_1004 NC_008782.1 1043462 1043986 R KEGG: rfr:Rfer_2645 fkbp-type peptidyl-prolyl cis-trans isomerase; fkbp-type peptidyl-prolyl cis-trans isomerase complement(1043462..1043986) Acidovorax sp. JS42 4674252 YP_985319.1 CDS Ajs_1005 NC_008782.1 1044040 1045161 D PFAM: AraC protein, arabinose-binding/dimerisation; Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: rfr:Rfer_2644 cupin 4; cupin 4 family protein 1044040..1045161 Acidovorax sp. JS42 4674046 YP_985320.1 CDS Ajs_1006 NC_008782.1 1045185 1045697 D KEGG: rfr:Rfer_2643 hypothetical protein; hypothetical protein 1045185..1045697 Acidovorax sp. JS42 4674134 YP_985321.1 CDS Ajs_1007 NC_008782.1 1045877 1046158 D KEGG: dar:Daro_0849 hypothetical protein; hypothetical protein 1045877..1046158 Acidovorax sp. JS42 4674164 YP_985322.1 CDS Ajs_1008 NC_008782.1 1046247 1047029 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like; beta-lactamase domain-containing protein complement(1046247..1047029) Acidovorax sp. JS42 4673298 YP_985323.1 CDS Ajs_1009 NC_008782.1 1047063 1048205 R PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein; NlpB/DapX family lipoprotein complement(1047063..1048205) Acidovorax sp. JS42 4673612 YP_985324.1 CDS Ajs_1010 NC_008782.1 1048235 1049131 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(1048235..1049131) Acidovorax sp. JS42 4673524 YP_985325.1 CDS Ajs_1011 NC_008782.1 1049166 1049750 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3169 methyltransferase type 11; type 12 methyltransferase complement(1049166..1049750) Acidovorax sp. JS42 4673241 YP_985326.1 CDS Ajs_1012 NC_008782.1 1049753 1049881 R hypothetical protein complement(1049753..1049881) Acidovorax sp. JS42 4673231 YP_985327.1 CDS Ajs_1013 NC_008782.1 1049884 1051101 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1049884..1051101) Acidovorax sp. JS42 4673365 YP_985328.1 CDS Ajs_1014 NC_008782.1 1051218 1053200 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1051218..1053200 Acidovorax sp. JS42 4672899 YP_985329.1 CDS Ajs_1015 NC_008782.1 1053239 1054117 D PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1053239..1054117 Acidovorax sp. JS42 4672666 YP_985330.1 CDS Ajs_1016 NC_008782.1 1054114 1056468 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1054114..1056468 Acidovorax sp. JS42 4672672 YP_985331.1 CDS Ajs_1017 NC_008782.1 1056661 1058436 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1056661..1058436 Acidovorax sp. JS42 4672800 YP_985332.1 CDS Ajs_1018 NC_008782.1 1058570 1059028 R PFAM: Endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1058570..1059028) Acidovorax sp. JS42 4672702 YP_985333.1 CDS Ajs_1020 NC_008782.1 1061805 1063268 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404; hypothetical protein 1061805..1063268 Acidovorax sp. JS42 4672247 YP_985334.1 CDS Ajs_1021 NC_008782.1 1063717 1064685 D PFAM: protein of unknown function DUF403; KEGG: rfr:Rfer_2473 protein of unknown function DUF403; hypothetical protein 1063717..1064685 Acidovorax sp. JS42 4672192 YP_985335.1 CDS Ajs_1022 NC_008782.1 1064719 1065096 R hypothetical protein complement(1064719..1065096) Acidovorax sp. JS42 4672173 YP_985336.1 CDS Ajs_1023 NC_008782.1 1065250 1065522 R KEGG: rfr:Rfer_1416 hypothetical protein; hypothetical protein complement(1065250..1065522) Acidovorax sp. JS42 4672139 YP_985337.1 CDS Ajs_1024 NC_008782.1 1065632 1066546 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1065632..1066546) Acidovorax sp. JS42 4671921 YP_985338.1 CDS Ajs_1026 NC_008782.1 1067547 1068983 D PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_0086 aldehyde dehydrogenase; 2,5-dioxopentanoate dehydrogenase 1067547..1068983 Acidovorax sp. JS42 4671425 YP_985339.1 CDS Ajs_1027 NC_008782.1 1069040 1071193 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1785 putative ferrisiderophore receptor; TonB-dependent siderophore receptor complement(1069040..1071193) Acidovorax sp. JS42 4671490 YP_985340.1 CDS Ajs_1028 NC_008782.1 1071268 1073424 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gvi:glr0349 ferrichrome-iron receptor; TonB-dependent siderophore receptor complement(1071268..1073424) Acidovorax sp. JS42 4671628 YP_985341.1 CDS Ajs_1029 NC_008782.1 1073457 1074182 R KEGG: bxe:Bxe_C0724 hypothetical protein; hypothetical protein complement(1073457..1074182) Acidovorax sp. JS42 4671593 YP_985342.1 CDS Ajs_1030 NC_008782.1 1074448 1074795 R KEGG: pfl:PFL_0987 hypothetical protein; hypothetical protein complement(1074448..1074795) Acidovorax sp. JS42 4671581 YP_985343.1 CDS Ajs_1031 NC_008782.1 1074797 1076479 R PFAM: PepSY-associated TM helix domain protein; KEGG: bbr:BB3604 putative iron uptake protein; PepSY-associated TM helix domain-containing protein complement(1074797..1076479) Acidovorax sp. JS42 4671534 YP_985344.1 CDS Ajs_1032 NC_008782.1 1076476 1076784 R KEGG: bbr:BB3605 putative iron uptake protein; putative iron uptake protein complement(1076476..1076784) Acidovorax sp. JS42 4671525 YP_985345.1 CDS Ajs_1033 NC_008782.1 1077108 1078040 R PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase; 3-mercaptopyruvate sulfurtransferase complement(1077108..1078040) Acidovorax sp. JS42 4670998 YP_985346.1 CDS Ajs_1034 NC_008782.1 1078068 1078979 R KEGG: pol:Bpro_1743 putative transmembrane protein; hypothetical protein complement(1078068..1078979) Acidovorax sp. JS42 4670928 YP_985347.1 CDS Ajs_1035 NC_008782.1 1079077 1080216 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein; Rieske (2Fe-2S) domain-containing protein complement(1079077..1080216) Acidovorax sp. JS42 4670531 YP_985348.1 CDS Ajs_1036 NC_008782.1 1080499 1080768 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1080499..1080768 Acidovorax sp. JS42 4670855 YP_985349.1 CDS Ajs_1037 NC_008782.1 1080765 1081700 D PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase; farnesyl-diphosphate synthase 1080765..1081700 Acidovorax sp. JS42 4670784 YP_985350.1 CDS Ajs_1038 NC_008782.1 1081806 1083695 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1081806..1083695 Acidovorax sp. JS42 4670731 YP_985351.1 CDS Ajs_1039 NC_008782.1 1083969 1085051 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP 1083969..1085051 Acidovorax sp. JS42 4670644 YP_985352.1 CDS Ajs_1040 NC_008782.1 1085191 1087017 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(1085191..1087017) Acidovorax sp. JS42 4674457 YP_985353.1 CDS Ajs_1041 NC_008782.1 1087039 1087665 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(1087039..1087665) Acidovorax sp. JS42 4674069 YP_985354.1 CDS Ajs_1042 NC_008782.1 1087989 1089860 R KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 complement(1087989..1089860) Acidovorax sp. JS42 4674152 YP_985355.1 CDS Ajs_1044 NC_008782.1 1095026 1096159 D PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb4144 response regulator containing a CheY-like receiver domain and an HD-GYP domain; response regulator receiver modulated metal dependent phosphohydrolase 1095026..1096159 Acidovorax sp. JS42 4674087 YP_985356.1 CDS Ajs_1045 NC_008782.1 1096243 1097286 R PFAM: inositol monophosphatase; KEGG: rfr:Rfer_2892 inositol-1(or 4)-monophosphatase; inositol-phosphate phosphatase complement(1096243..1097286) Acidovorax sp. JS42 4674081 YP_985357.1 CDS Ajs_1046 NC_008782.1 1097382 1098176 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1; RNA methyltransferase 1097382..1098176 Acidovorax sp. JS42 4674057 YP_985358.1 CDS Ajs_1047 NC_008782.1 1098210 1099001 D TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase; serine O-acetyltransferase 1098210..1099001 Acidovorax sp. JS42 4674082 YP_985359.1 CDS Ajs_1048 NC_008782.1 1099010 1099669 D PFAM: nitroreductase; KEGG: ccr:CC0324 NADH dehydrogenase; nitroreductase 1099010..1099669 Acidovorax sp. JS42 4671344 YP_985360.1 CDS Ajs_1049 NC_008782.1 1099786 1100886 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent); alcohol dehydrogenase complement(1099786..1100886) Acidovorax sp. JS42 4670615 YP_985361.1 CDS Ajs_1050 NC_008782.1 1100944 1102590 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: bma:BMA1270 sulfate permease family protein; sulfate transporter complement(1100944..1102590) Acidovorax sp. JS42 4670619 YP_985362.1 CDS Ajs_1051 NC_008782.1 1102619 1103227 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: rfr:Rfer_2889 molybdopterin binding domain; molybdopterin adenylyltransferase complement(1102619..1103227) Acidovorax sp. JS42 4670641 YP_985363.1 CDS Ajs_1052 NC_008782.1 1103220 1103882 R PFAM: protein of unknown function DUF615; KEGG: rfr:Rfer_2888 protein of unknown function DUF615; hypothetical protein complement(1103220..1103882) Acidovorax sp. JS42 4670656 YP_985364.1 CDS Ajs_1053 NC_008782.1 1103927 1105387 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_2887 peptidase U62, modulator of DNA gyrase; microcin-processing peptidase 1 1103927..1105387 Acidovorax sp. JS42 4670662 YP_985365.1 CDS Ajs_1054 NC_008782.1 1105413 1106333 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: cvi:CV1904 probable transmembrane protein, DMT Superfamily; hypothetical protein 1105413..1106333 Acidovorax sp. JS42 4670702 YP_985366.1 CDS Ajs_1055 NC_008782.1 1106418 1107446 R KEGG: eba:ebA7139 hypothetical protein, INTERPRO suggestion: probable sugar transporter superfamily; hypothetical protein complement(1106418..1107446) Acidovorax sp. JS42 4670713 YP_985367.1 CDS Ajs_1056 NC_008782.1 1107589 1109229 R TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; fumarase complement(1107589..1109229) Acidovorax sp. JS42 4670727 YP_985368.1 CDS fumC NC_008782.1 1109347 1110738 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1109347..1110738 Acidovorax sp. JS42 4670733 YP_985369.1 CDS Ajs_1058 NC_008782.1 1110783 1111559 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rfr:Rfer_3326 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(1110783..1111559) Acidovorax sp. JS42 4670786 YP_985370.1 CDS Ajs_1059 NC_008782.1 1111750 1112478 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfv:SFV_2140 transcriptional response regulatory protein; two component transcriptional regulator complement(1111750..1112478) Acidovorax sp. JS42 4670791 YP_985371.1 CDS Ajs_1060 NC_008782.1 1112475 1114007 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2867 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase complement(1112475..1114007) Acidovorax sp. JS42 4670795 YP_985372.1 CDS proX NC_008782.1 1114205 1115056 R with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine; glycine betaine transporter periplasmic subunit complement(1114205..1115056) Acidovorax sp. JS42 4670807 YP_985373.1 CDS Ajs_1062 NC_008782.1 1115353 1116432 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(1115353..1116432) Acidovorax sp. JS42 4670808 YP_985374.1 CDS Ajs_1063 NC_008782.1 1116486 1116734 R KEGG: rru:Rru_A2477 substrate-binding region of ABC-type glycine betaine transport system; hypothetical protein complement(1116486..1116734) Acidovorax sp. JS42 4670818 YP_985375.1 CDS Ajs_1064 NC_008782.1 1116771 1117973 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2476 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1116771..1117973) Acidovorax sp. JS42 4670819 YP_985376.1 CDS Ajs_1065 NC_008782.1 1117998 1119374 R KEGG: sbo:SBO_2839 ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(1117998..1119374) Acidovorax sp. JS42 4670893 YP_985377.1 CDS Ajs_1066 NC_008782.1 1119944 1120555 R PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114; hypothetical protein complement(1119944..1120555) Acidovorax sp. JS42 4670951 YP_985378.1 CDS Ajs_1067 NC_008782.1 1120761 1122758 D TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2581 acetate--CoA ligase; acetyl-coenzyme A synthetase 1120761..1122758 Acidovorax sp. JS42 4670964 YP_985379.1 CDS Ajs_1068 NC_008782.1 1123355 1123864 D KEGG: rfr:Rfer_3310 hypothetical protein; hypothetical protein 1123355..1123864 Acidovorax sp. JS42 4670976 YP_985380.1 CDS Ajs_1069 NC_008782.1 1123951 1124256 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I; class I cytochrome c complement(1123951..1124256) Acidovorax sp. JS42 4670992 YP_985381.1 CDS Ajs_1070 NC_008782.1 1124365 1124607 D KEGG: pol:Bpro_2051 hypothetical protein; hypothetical protein 1124365..1124607 Acidovorax sp. JS42 4671019 YP_985382.1 CDS Ajs_1071 NC_008782.1 1124740 1126434 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1124740..1126434) Acidovorax sp. JS42 4670553 YP_985383.1 CDS Ajs_1072 NC_008782.1 1126664 1128520 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1126664..1128520 Acidovorax sp. JS42 4671026 YP_985384.1 CDS Ajs_1073 NC_008782.1 1128663 1129103 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mlo:mlr6946 hypothetical protein; hypothetical protein 1128663..1129103 Acidovorax sp. JS42 4671027 YP_985385.1 CDS Ajs_1074 NC_008782.1 1129117 1129599 R TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: xac:XAC1438 bacterioferritin; bacterioferritin complement(1129117..1129599) Acidovorax sp. JS42 4671049 YP_985386.1 CDS Ajs_1075 NC_008782.1 1129772 1130605 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1129772..1130605 Acidovorax sp. JS42 4671083 YP_985387.1 CDS Ajs_1076 NC_008782.1 1130841 1131512 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2090 transcriptional regulator, GntR family; GntR family transcriptional regulator 1130841..1131512 Acidovorax sp. JS42 4671098 YP_985388.1 CDS Ajs_1077 NC_008782.1 1131509 1132969 D PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 1131509..1132969 Acidovorax sp. JS42 4671111 YP_985389.1 CDS Ajs_1078 NC_008782.1 1133116 1134150 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal; hypothetical protein 1133116..1134150 Acidovorax sp. JS42 4671113 YP_985390.1 CDS Ajs_1079 NC_008782.1 1134218 1135045 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1924 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1134218..1135045 Acidovorax sp. JS42 4671164 YP_985391.1 CDS Ajs_1080 NC_008782.1 1135067 1136626 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 1135067..1136626 Acidovorax sp. JS42 4671177 YP_985392.1 CDS Ajs_1081 NC_008782.1 1136732 1137175 R PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 UspA; UspA domain-containing protein complement(1136732..1137175) Acidovorax sp. JS42 4671178 YP_985393.1 CDS Ajs_1082 NC_008782.1 1137248 1139689 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1137248..1139689 Acidovorax sp. JS42 4671252 YP_985394.1 CDS Ajs_1083 NC_008782.1 1139691 1139828 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type; cbb3-type cytochrome oxidase maturation protein 1139691..1139828 Acidovorax sp. JS42 4671241 YP_985395.1 CDS Ajs_1084 NC_008782.1 1139894 1141333 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1139894..1141333 Acidovorax sp. JS42 4674160 YP_985396.1 CDS Ajs_1085 NC_008782.1 1141353 1141985 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 1141353..1141985 Acidovorax sp. JS42 4674206 YP_985397.1 CDS Ajs_1086 NC_008782.1 1142000 1142137 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component; Cbb3-type cytochrome oxidase component 1142000..1142137 Acidovorax sp. JS42 4671267 YP_985398.1 CDS Ajs_1087 NC_008782.1 1142167 1143081 D TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: pol:Bpro_4302 cytochrome c oxidase, cbb3-type, subunit III; cbb3-type cytochrome c oxidase subunit III 1142167..1143081 Acidovorax sp. JS42 4671262 YP_985399.1 CDS Ajs_1088 NC_008782.1 1143166 1144608 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1143166..1144608 Acidovorax sp. JS42 4671240 YP_985400.1 CDS Ajs_1089 NC_008782.1 1144670 1144948 D KEGG: pol:Bpro_4300 hypothetical protein; hypothetical protein 1144670..1144948 Acidovorax sp. JS42 4671218 YP_985401.1 CDS Ajs_1090 NC_008782.1 1144986 1145312 D KEGG: rfr:Rfer_1936 hypothetical protein; hypothetical protein 1144986..1145312 Acidovorax sp. JS42 4671185 YP_985402.1 CDS Ajs_1091 NC_008782.1 1145353 1146096 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(1145353..1146096) Acidovorax sp. JS42 4671422 YP_985403.1 CDS Ajs_1092 NC_008782.1 1146268 1147650 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1146268..1147650 Acidovorax sp. JS42 4671439 YP_985404.1 CDS Ajs_1093 NC_008782.1 1147654 1148373 D KEGG: pol:Bpro_1209 hypothetical protein; hypothetical protein 1147654..1148373 Acidovorax sp. JS42 4671522 YP_985405.1 CDS Ajs_1094 NC_008782.1 1149012 1149356 R PFAM: protein of unknown function DUF710; KEGG: rfr:Rfer_2627 protein of unknown function DUF710; cell division protein ZapA complement(1149012..1149356) Acidovorax sp. JS42 4671401 YP_985406.1 CDS Ajs_1095 NC_008782.1 1149353 1149592 R KEGG: rfr:Rfer_2626 hypothetical protein; hypothetical protein complement(1149353..1149592) Acidovorax sp. JS42 4671489 YP_985407.1 CDS Ajs_1096 NC_008782.1 1149951 1151831 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein; TonB-dependent receptor 1149951..1151831 Acidovorax sp. JS42 4671538 YP_985408.1 CDS Ajs_1097 NC_008782.1 1151854 1153212 D PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase; hydrogenobyrinic acid a,c-diamide synthase / cobyrinate a,c-diamide synthase 1151854..1153212 Acidovorax sp. JS42 4671312 YP_985409.1 CDS Ajs_1098 NC_008782.1 1153209 1153808 D PFAM: cobalbumin biosynthesis enzyme; KEGG: rfr:Rfer_2622 cobalbumin biosynthesis enzyme; adenosylcobinamide kinase 1153209..1153808 Acidovorax sp. JS42 4671328 YP_985410.1 CDS Ajs_1099 NC_008782.1 1153805 1154695 D PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein; periplasmic-binding protein 1153805..1154695 Acidovorax sp. JS42 4671347 YP_985411.1 CDS Ajs_1100 NC_008782.1 1154692 1155774 D PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein; transport system permease 1154692..1155774 Acidovorax sp. JS42 4671331 YP_985412.1 CDS Ajs_1101 NC_008782.1 1155771 1156553 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related; ABC transporter-like protein 1155771..1156553 Acidovorax sp. JS42 4671306 YP_985413.1 CDS Ajs_1102 NC_008782.1 1156914 1157483 D KEGG: rfr:Rfer_2618 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)yrinic acid a,c-diamide adenosyltransferase 1156914..1157483 Acidovorax sp. JS42 4671322 YP_985414.1 CDS Ajs_1105 NC_008782.1 1158904 1159230 R KEGG: sma:SAV1685 hypothetical protein; hypothetical protein complement(1158904..1159230) Acidovorax sp. JS42 4671266 YP_985415.1 CDS Ajs_1106 NC_008782.1 1159398 1160084 R KEGG: dar:Daro_3102 hypothetical protein; hypothetical protein complement(1159398..1160084) Acidovorax sp. JS42 4671577 YP_985416.1 CDS Ajs_1107 NC_008782.1 1160193 1161419 R PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type complement(1160193..1161419) Acidovorax sp. JS42 4671578 YP_985417.1 CDS Ajs_1108 NC_008782.1 1161652 1162377 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rxy:Rxyl_0508 haloacid dehalogenase, type II; haloacid dehalogenase complement(1161652..1162377) Acidovorax sp. JS42 4671263 YP_985418.1 CDS Ajs_1109 NC_008782.1 1162521 1163756 D PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_4025 major facilitator superfamily MFS_1; major facilitator superfamily transporter 1162521..1163756 Acidovorax sp. JS42 4671258 YP_985419.1 CDS Ajs_1110 NC_008782.1 1163831 1164970 R KEGG: bpa:BPP1290 hypothetical protein; hypothetical protein complement(1163831..1164970) Acidovorax sp. JS42 4671269 YP_985420.1 CDS Ajs_1111 NC_008782.1 1164975 1165451 R PFAM: regulatory protein, MarR; KEGG: gme:Gmet_0359 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(1164975..1165451) Acidovorax sp. JS42 4671265 YP_985421.1 CDS Ajs_1112 NC_008782.1 1165547 1167856 R NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme complement(1165547..1167856) Acidovorax sp. JS42 4671259 YP_985422.1 CDS Ajs_1113 NC_008782.1 1168046 1169533 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein; uracil-xanthine permease complement(1168046..1169533) Acidovorax sp. JS42 4671227 YP_985423.1 CDS Ajs_1114 NC_008782.1 1169838 1171127 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; peptidase dimerisation domain-containing protein complement(1169838..1171127) Acidovorax sp. JS42 4671243 YP_985424.1 CDS Ajs_1115 NC_008782.1 1171135 1172904 R putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia; putative bifunctional OHCU decarboxylase/allantoate amidohydrolase complement(1171135..1172904) Acidovorax sp. JS42 4671250 YP_985425.1 CDS Ajs_1116 NC_008782.1 1172956 1174182 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(1172956..1174182) Acidovorax sp. JS42 4671221 YP_985426.1 CDS Ajs_1117 NC_008782.1 1174409 1175368 R PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase; polysaccharide deacetylase complement(1174409..1175368) Acidovorax sp. JS42 4671223 YP_985427.1 CDS Ajs_1118 NC_008782.1 1175365 1176042 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1425 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(1175365..1176042) Acidovorax sp. JS42 4671212 YP_985428.1 CDS Ajs_1119 NC_008782.1 1176095 1177009 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1176095..1177009) Acidovorax sp. JS42 4671206 YP_985429.1 CDS Ajs_1120 NC_008782.1 1177132 1178229 D KEGG: bxe:Bxe_B1620 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 1177132..1178229 Acidovorax sp. JS42 4671205 YP_985430.1 CDS Ajs_1121 NC_008782.1 1178289 1179266 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein 1178289..1179266 Acidovorax sp. JS42 4671202 YP_985431.1 CDS Ajs_1122 NC_008782.1 1179320 1180642 D PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase; hydroxypyruvate reductase 1179320..1180642 Acidovorax sp. JS42 4671615 YP_985432.1 CDS Ajs_1123 NC_008782.1 1180965 1181315 D PFAM: Transthyretin; KEGG: pol:Bpro_1426 transthyretin; transthyretin 1180965..1181315 Acidovorax sp. JS42 4671190 YP_985433.1 CDS Ajs_1124 NC_008782.1 1181501 1181974 R KEGG: pol:Bpro_1428 hypothetical protein; hypothetical protein complement(1181501..1181974) Acidovorax sp. JS42 4671635 YP_985434.1 CDS Ajs_1125 NC_008782.1 1182072 1182959 D PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182; hypothetical protein 1182072..1182959 Acidovorax sp. JS42 4671349 YP_985435.1 CDS Ajs_1126 NC_008782.1 1183033 1184490 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1183033..1184490) Acidovorax sp. JS42 4671673 YP_985436.1 CDS Ajs_1127 NC_008782.1 1184499 1185296 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein; GntR family transcriptional regulator 1184499..1185296 Acidovorax sp. JS42 4671682 YP_985437.1 CDS Ajs_1128 NC_008782.1 1185485 1186690 D PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein; hypothetical protein 1185485..1186690 Acidovorax sp. JS42 4671707 YP_985438.1 CDS Ajs_1129 NC_008782.1 1186724 1188007 D Catalyzes the deamination of guanine; guanine deaminase 1186724..1188007 Acidovorax sp. JS42 4671716 YP_985439.1 CDS dcd NC_008782.1 1188098 1188664 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1188098..1188664 Acidovorax sp. JS42 4671723 YP_985440.1 CDS Ajs_1131 NC_008782.1 1189146 1190009 D PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: pol:Bpro_1515 protein of unknown function, zinc metallopeptidase putative; hypothetical protein 1189146..1190009 Acidovorax sp. JS42 4671768 YP_985441.1 CDS Ajs_1132 NC_008782.1 1190125 1191579 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 1190125..1191579 Acidovorax sp. JS42 4671779 YP_985442.1 CDS Ajs_1133 NC_008782.1 1191673 1192287 R KEGG: rfr:Rfer_3207 hypothetical protein; hypothetical protein complement(1191673..1192287) Acidovorax sp. JS42 4671808 YP_985443.1 CDS Ajs_1134 NC_008782.1 1192352 1192900 R PFAM: NosL family protein; KEGG: tbd:Tbd_1394 putative lipoprotein involved in nitrous oxide reduction; NosL family protein complement(1192352..1192900) Acidovorax sp. JS42 4671811 YP_985444.1 CDS Ajs_1135 NC_008782.1 1192897 1193712 R PFAM: ABC-2 type transporter; KEGG: eba:ebA6266 probable transmembrane protein; ABC-2 type transporter complement(1192897..1193712) Acidovorax sp. JS42 4671815 YP_985445.1 CDS Ajs_1136 NC_008782.1 1193733 1194665 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1392 ABC transporter ATPase; ABC transporter-like protein complement(1193733..1194665) Acidovorax sp. JS42 4671942 YP_985446.1 CDS Ajs_1137 NC_008782.1 1194640 1195911 R PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: tbd:Tbd_1391 nitrous oxidase accessory protein; periplasmic copper-binding protein complement(1194640..1195911) Acidovorax sp. JS42 4674297 YP_985447.1 CDS Ajs_1138 NC_008782.1 1195908 1198529 R PFAM: FMN-binding domain protein; KEGG: rfr:Rfer_3198 FMN-binding; FMN-binding domain-containing protein complement(1195908..1198529) Acidovorax sp. JS42 4674326 YP_985448.1 CDS Ajs_1139 NC_008782.1 1198631 1200571 R reduces nitrous oxide to nitrogen; nitrous-oxide reductase complement(1198631..1200571) Acidovorax sp. JS42 4674364 YP_985449.1 CDS Ajs_1140 NC_008782.1 1200583 1200948 R KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein complement(1200583..1200948) Acidovorax sp. JS42 4674330 YP_985450.1 CDS Ajs_1141 NC_008782.1 1201125 1201604 D PFAM: cytochrome c, class I; KEGG: tbd:Tbd_1398 putative cytochrome c-type protein; class I cytochrome c 1201125..1201604 Acidovorax sp. JS42 4671932 YP_985451.1 CDS Ajs_1142 NC_008782.1 1201623 1202711 D PFAM: ApbE family lipoprotein; KEGG: rme:Rmet_4919 ApbE-like lipoprotein; ApbE family lipoprotein 1201623..1202711 Acidovorax sp. JS42 4671839 YP_985452.1 CDS apaH NC_008782.1 1202818 1203663 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(1202818..1203663) Acidovorax sp. JS42 4671846 YP_985453.1 CDS Ajs_1144 NC_008782.1 1204003 1204299 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 1204003..1204299 Acidovorax sp. JS42 4672545 YP_985454.1 CDS Ajs_1145 NC_008782.1 1204697 1207615 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1204697..1207615 Acidovorax sp. JS42 4672476 YP_985455.1 CDS Ajs_1146 NC_008782.1 1207742 1208986 D PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase; FAD-binding monooxygenase 1207742..1208986 Acidovorax sp. JS42 4671946 YP_985456.1 CDS Ajs_1147 NC_008782.1 1209074 1210336 R PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein; major facilitator superfamily transporter complement(1209074..1210336) Acidovorax sp. JS42 4671912 YP_985457.1 CDS Ajs_1148 NC_008782.1 1210396 1211283 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: rso:RSc1352 probable two-component response regulator transcription regulator protein; response regulator receiver protein complement(1210396..1211283) Acidovorax sp. JS42 4671918 YP_985458.1 CDS Ajs_1149 NC_008782.1 1211304 1212266 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1211304..1212266 Acidovorax sp. JS42 4671888 YP_985459.1 CDS Ajs_1150 NC_008782.1 1212369 1213472 R PFAM: histidine kinase internal region; KEGG: rme:Rmet_1380 histidine kinase internal region; histidine kinase complement(1212369..1213472) Acidovorax sp. JS42 4671896 YP_985460.1 CDS Ajs_1151 NC_008782.1 1213516 1213836 R KEGG: rso:RSc1350 probable transmembrane protein; hypothetical protein complement(1213516..1213836) Acidovorax sp. JS42 4671873 YP_985461.1 CDS Ajs_1152 NC_008782.1 1214068 1214892 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1214068..1214892 Acidovorax sp. JS42 4672107 YP_985462.1 CDS Ajs_1153 NC_008782.1 1214898 1216688 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: rfr:Rfer_3471 diguanylate cyclase; diguanylate cyclase complement(1214898..1216688) Acidovorax sp. JS42 4671866 YP_985463.1 CDS Ajs_1154 NC_008782.1 1216797 1217612 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_1830 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(1216797..1217612) Acidovorax sp. JS42 4671868 YP_985464.1 CDS Ajs_1155 NC_008782.1 1217621 1218448 R PFAM: 20S proteasome, A and B subunits; KEGG: rfr:Rfer_1831 hypothetical protein; 20S proteasome subunits A/B complement(1217621..1218448) Acidovorax sp. JS42 4671849 YP_985465.1 CDS Ajs_1157 NC_008782.1 1221339 1222943 R PFAM: Alkaline phosphatase; KEGG: rfr:Rfer_1326 alkaline phosphatase; alkaline phosphatase complement(1221339..1222943) Acidovorax sp. JS42 4671860 YP_985466.1 CDS Ajs_1158 NC_008782.1 1222958 1224481 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase; diguanylate cyclase complement(1222958..1224481) Acidovorax sp. JS42 4671854 YP_985467.1 CDS Ajs_1159 NC_008782.1 1224575 1225549 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase complement(1224575..1225549) Acidovorax sp. JS42 4671844 YP_985468.1 CDS surE NC_008782.1 1225626 1226468 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1225626..1226468 Acidovorax sp. JS42 4672135 YP_985469.1 CDS Ajs_1161 NC_008782.1 1226468 1227238 D KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1226468..1227238 Acidovorax sp. JS42 4672147 YP_985470.1 CDS Ajs_1162 NC_008782.1 1227250 1228161 D PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rfr:Rfer_2780 peptidase M23B; peptidase M23B 1227250..1228161 Acidovorax sp. JS42 4672153 YP_985471.1 CDS Ajs_1163 NC_008782.1 1228176 1229180 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2314 pseudouridine synthase, RluD; ribosomal large subunit pseudouridine synthase D 1228176..1229180 Acidovorax sp. JS42 4672186 YP_985472.1 CDS Ajs_1164 NC_008782.1 1229331 1230035 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rfr:Rfer_2313 putative transcriptional regulator; condensin subunit ScpB 1229331..1230035 Acidovorax sp. JS42 4672199 YP_985473.1 CDS Ajs_1165 NC_008782.1 1230032 1231375 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2312 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase B 1230032..1231375 Acidovorax sp. JS42 4672225 YP_985474.1 CDS ndk NC_008782.1 1231452 1231877 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1231452..1231877 Acidovorax sp. JS42 4672269 YP_985475.1 CDS Ajs_1167 NC_008782.1 1231962 1233086 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rfr:Rfer_2310 hypothetical protein; radical SAM protein 1231962..1233086 Acidovorax sp. JS42 4672272 YP_985476.1 CDS Ajs_1168 NC_008782.1 1233118 1233945 D KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1233118..1233945 Acidovorax sp. JS42 4672283 YP_985477.1 CDS Ajs_1169 NC_008782.1 1233980 1234906 D KEGG: pol:Bpro_2609 hypothetical protein; hypothetical protein 1233980..1234906 Acidovorax sp. JS42 4672295 YP_985478.1 CDS ispG NC_008782.1 1234907 1236184 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1234907..1236184 Acidovorax sp. JS42 4672307 YP_985479.1 CDS hisS NC_008782.1 1236282 1237571 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1236282..1237571 Acidovorax sp. JS42 4672361 YP_985480.1 CDS Ajs_1172 NC_008782.1 1237585 1238262 D KEGG: pol:Bpro_2606 hypothetical protein; hypothetical protein 1237585..1238262 Acidovorax sp. JS42 4672382 YP_985481.1 CDS Ajs_1173 NC_008782.1 1238259 1239410 D PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1238259..1239410 Acidovorax sp. JS42 4672387 YP_985482.1 CDS engA NC_008782.1 1239430 1240773 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1239430..1240773 Acidovorax sp. JS42 4672393 YP_985483.1 CDS Ajs_1175 NC_008782.1 1240851 1241102 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rfr:Rfer_2302 host factor Hfq; RNA chaperone Hfq 1240851..1241102 Acidovorax sp. JS42 4672396 YP_985484.1 CDS Ajs_1176 NC_008782.1 1241166 1242344 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_2301 small GTP-binding protein domain; small GTP-binding protein 1241166..1242344 Acidovorax sp. JS42 4672399 YP_985485.1 CDS Ajs_1177 NC_008782.1 1242396 1243751 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2300 HflK protein; HflK protein 1242396..1243751 Acidovorax sp. JS42 4672403 YP_985486.1 CDS Ajs_1178 NC_008782.1 1243761 1244666 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2299 HflC protein; HflC protein 1243761..1244666 Acidovorax sp. JS42 4672414 YP_985487.1 CDS Ajs_1179 NC_008782.1 1244696 1244875 D KEGG: rfr:Rfer_2298 hypothetical protein; hypothetical protein 1244696..1244875 Acidovorax sp. JS42 4672421 YP_985488.1 CDS Ajs_1180 NC_008782.1 1244951 1246099 D PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rfr:Rfer_2297 tRNA synthetase, class II (G, H, P and S); class II tRNA synthetase 1244951..1246099 Acidovorax sp. JS42 4672426 YP_985489.1 CDS Ajs_1181 NC_008782.1 1246129 1247505 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1246129..1247505 Acidovorax sp. JS42 4672451 YP_985490.1 CDS Ajs_1182 NC_008782.1 1247577 1248101 D PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase; phosphoribosyltransferase 1247577..1248101 Acidovorax sp. JS42 4672453 YP_985491.1 CDS Ajs_1183 NC_008782.1 1253890 1254627 D PFAM: pseudouridine synthase; KEGG: rfr:Rfer_2976 pseudouridine synthase, Rsu; ribosomal small subunit pseudouridine synthase A 1253890..1254627 Acidovorax sp. JS42 4672596 YP_985492.1 CDS Ajs_1184 NC_008782.1 1254787 1255761 D KEGG: pol:Bpro_1802 hypothetical protein; hypothetical protein 1254787..1255761 Acidovorax sp. JS42 4672586 YP_985493.1 CDS Ajs_1185 NC_008782.1 1255748 1256587 D PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase; polysaccharide deacetylase 1255748..1256587 Acidovorax sp. JS42 4672568 YP_985494.1 CDS Ajs_1186 NC_008782.1 1256638 1257636 D KEGG: pol:Bpro_1804 hypothetical protein; hypothetical protein 1256638..1257636 Acidovorax sp. JS42 4672569 YP_985495.1 CDS Ajs_1187 NC_008782.1 1257652 1258554 D KEGG: rfr:Rfer_2977 putative transmembrane protein; hypothetical protein 1257652..1258554 Acidovorax sp. JS42 4672567 YP_985496.1 CDS Ajs_1188 NC_008782.1 1258551 1259372 D PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain; molybdopterin-binding domain-containing protein 1258551..1259372 Acidovorax sp. JS42 4672573 YP_985497.1 CDS Ajs_1189 NC_008782.1 1259529 1260944 D KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase 1259529..1260944 Acidovorax sp. JS42 4672561 YP_985498.1 CDS Ajs_1190 NC_008782.1 1261151 1261654 D KEGG: rfr:Rfer_2980 conserved hypothetical signal peptide protein; putative signal peptide protein 1261151..1261654 Acidovorax sp. JS42 4672551 YP_985499.1 CDS Ajs_1191 NC_008782.1 1261671 1262759 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB; signal transduction histidine kinase NtrB 1261671..1262759 Acidovorax sp. JS42 4672560 YP_985500.1 CDS Ajs_1192 NC_008782.1 1262811 1264346 D KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 1262811..1264346 Acidovorax sp. JS42 4672541 YP_985501.1 CDS Ajs_1193 NC_008782.1 1264528 1265481 D KEGG: par:Psyc_1331 hypothetical protein; hypothetical protein 1264528..1265481 Acidovorax sp. JS42 4672548 YP_985502.1 CDS Ajs_1194 NC_008782.1 1265522 1266298 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth); exodeoxyribonuclease III Xth complement(1265522..1266298) Acidovorax sp. JS42 4672511 YP_985503.1 CDS Ajs_1195 NC_008782.1 1266369 1266863 R PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase; dihydrofolate reductase complement(1266369..1266863) Acidovorax sp. JS42 4672549 YP_985504.1 CDS Ajs_1196 NC_008782.1 1266866 1267561 R KEGG: net:Neut_1890 conserved hypothetical protein; hypothetical protein complement(1266866..1267561) Acidovorax sp. JS42 4672543 YP_985505.1 CDS thyA NC_008782.1 1267599 1268432 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1267599..1268432) Acidovorax sp. JS42 4672547 YP_985506.1 CDS Ajs_1198 NC_008782.1 1268485 1269909 R PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like; FAD linked oxidase domain-containing protein complement(1268485..1269909) Acidovorax sp. JS42 4672539 YP_985507.1 CDS Ajs_1199 NC_008782.1 1269951 1270367 R KEGG: pol:Bpro_1829 membrane protein-like; membrane protein complement(1269951..1270367) Acidovorax sp. JS42 4672510 YP_985508.1 CDS Ajs_1200 NC_008782.1 1270389 1271678 D TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative; putative ribonuclease BN 1270389..1271678 Acidovorax sp. JS42 4672519 YP_985509.1 CDS Ajs_1201 NC_008782.1 1271703 1273007 R PFAM: amine oxidase; KEGG: rfr:Rfer_1548 amine oxidase; amine oxidase complement(1271703..1273007) Acidovorax sp. JS42 4672509 YP_985510.1 CDS Ajs_1202 NC_008782.1 1273004 1273843 R PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase; farnesyl-diphosphate farnesyltransferase complement(1273004..1273843) Acidovorax sp. JS42 4672489 YP_985511.1 CDS Ajs_1203 NC_008782.1 1273991 1274881 D PFAM: metallophosphoesterase; KEGG: pol:Bpro_2244 metallophosphoesterase; metallophosphoesterase 1273991..1274881 Acidovorax sp. JS42 4672827 YP_985512.1 CDS Ajs_1204 NC_008782.1 1274887 1276053 D KEGG: eba:ebA5591 hypothetical protein; monogalactosyldiacylglycerol synthase 1274887..1276053 Acidovorax sp. JS42 4671988 YP_985513.1 CDS Ajs_1205 NC_008782.1 1276139 1277029 R PFAM: Squalene/phytoene synthase; KEGG: rfr:Rfer_1550 squalene/phytoene synthase; squalene/phytoene synthase complement(1276139..1277029) Acidovorax sp. JS42 4671989 YP_985514.1 CDS Ajs_1206 NC_008782.1 1277117 1278274 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_1551 secretion protein HlyD; RND family efflux transporter MFP subunit 1277117..1278274 Acidovorax sp. JS42 4671994 YP_985515.1 CDS Ajs_1207 NC_008782.1 1278381 1281530 D PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein; acriflavin resistance protein 1278381..1281530 Acidovorax sp. JS42 4672472 YP_985516.1 CDS tig NC_008782.1 1281785 1283095 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1281785..1283095 Acidovorax sp. JS42 4672882 YP_985517.1 CDS clpP NC_008782.1 1283219 1283827 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1283219..1283827 Acidovorax sp. JS42 4672936 YP_985518.1 CDS clpX NC_008782.1 1283925 1285190 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1283925..1285190 Acidovorax sp. JS42 4672963 YP_985519.1 CDS Ajs_1211 NC_008782.1 1285330 1287750 D KEGG: rfr:Rfer_1556 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Lon-A peptidase 1285330..1287750 Acidovorax sp. JS42 4672970 YP_985520.1 CDS Ajs_1213 NC_008782.1 1288148 1289383 D PFAM: phage integrase family protein; KEGG: xcv:XCV2261 phage-related integrase; phage integrase family protein 1288148..1289383 Acidovorax sp. JS42 4672733 YP_985521.1 CDS Ajs_1214 NC_008782.1 1289444 1290976 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit 1289444..1290976 Acidovorax sp. JS42 4672735 YP_985522.1 CDS Ajs_1215 NC_008782.1 1290966 1291787 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1290966..1291787 Acidovorax sp. JS42 4673047 YP_985523.1 CDS Ajs_1216 NC_008782.1 1291835 1292470 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 1291835..1292470 Acidovorax sp. JS42 4673062 YP_985524.1 CDS Ajs_1219 NC_008782.1 1294231 1295220 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sco:SCO2329 transcriptional regulator; transcriptional regulator 1294231..1295220 Acidovorax sp. JS42 4673077 YP_985525.1 CDS Ajs_1220 NC_008782.1 1295245 1295880 R PFAM: LysR, substrate-binding; KEGG: xfa:XF1719 hypothetical protein; LysR family transcriptional regulator complement(1295245..1295880) Acidovorax sp. JS42 4674644 YP_985526.1 CDS Ajs_1221 NC_008782.1 1296054 1296671 D KEGG: mag:amb3764 hypothetical protein; hypothetical protein 1296054..1296671 Acidovorax sp. JS42 4674556 YP_985527.1 CDS Ajs_1222 NC_008782.1 1296668 1298338 D PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 1296668..1298338 Acidovorax sp. JS42 4674676 YP_985528.1 CDS Ajs_1223 NC_008782.1 1298335 1299231 D PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 1298335..1299231 Acidovorax sp. JS42 4674655 YP_985529.1 CDS Ajs_1224 NC_008782.1 1299303 1300721 D KEGG: mag:amb3760 hypothetical protein; hypothetical protein 1299303..1300721 Acidovorax sp. JS42 4674633 YP_985530.1 CDS Ajs_1225 NC_008782.1 1301445 1302671 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 1301445..1302671 Acidovorax sp. JS42 4674505 YP_985531.1 CDS Ajs_1226 NC_008782.1 1302933 1304159 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1302933..1304159 Acidovorax sp. JS42 4673134 YP_985532.1 CDS Ajs_1229 NC_008782.1 1305583 1306485 R PFAM: LysR, substrate-binding; KEGG: bxe:Bxe_A1136 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1305583..1306485) Acidovorax sp. JS42 4673249 YP_985533.1 CDS Ajs_1230 NC_008782.1 1306498 1307586 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(1306498..1307586) Acidovorax sp. JS42 4673250 YP_985534.1 CDS Ajs_1231 NC_008782.1 1307658 1307798 R KEGG: xfa:XF1722 hypothetical protein; hypothetical protein complement(1307658..1307798) Acidovorax sp. JS42 4673863 YP_985535.1 CDS Ajs_1232 NC_008782.1 1308007 1311126 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pfo:Pfl_2396 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(1308007..1311126) Acidovorax sp. JS42 4673885 YP_985536.1 CDS Ajs_1234 NC_008782.1 1311369 1312349 R PFAM: copper resistance B precursor; KEGG: rso:RSp0657 probable copper resistance protein B; copper resistance B complement(1311369..1312349) Acidovorax sp. JS42 4673896 YP_985537.1 CDS Ajs_1235 NC_008782.1 1312375 1314267 R TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: net:Neut_0021 copper-resistance protein, CopA family protein; CopA family copper resistance protein complement(1312375..1314267) Acidovorax sp. JS42 4673849 YP_985538.1 CDS Ajs_1236 NC_008782.1 1314511 1315170 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: net:Neut_0018 two component heavy metal response transcriptional regulator, winged helix family protein; two component heavy metal response transcriptional regulator 1314511..1315170 Acidovorax sp. JS42 4673859 YP_985539.1 CDS Ajs_1238 NC_008782.1 1315520 1316680 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0741 putative transposase IS30; integrase catalytic subunit complement(1315520..1316680) Acidovorax sp. JS42 4673851 YP_985540.1 CDS Ajs_1239 NC_008782.1 1316791 1317159 D KEGG: pol:Bpro_2475 integrase, catalytic region; integrase catalytic subunit 1316791..1317159 Acidovorax sp. JS42 4673901 YP_985541.1 CDS Ajs_1240 NC_008782.1 1317323 1319257 R PFAM: cytochrome c, class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1; iron permease FTR1 complement(1317323..1319257) Acidovorax sp. JS42 4673909 YP_985542.1 CDS Ajs_1241 NC_008782.1 1319385 1319819 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_5946 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1319385..1319819) Acidovorax sp. JS42 4673913 YP_985543.1 CDS Ajs_1242 NC_008782.1 1319914 1322313 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1319914..1322313 Acidovorax sp. JS42 4673910 YP_985544.1 CDS Ajs_1243 NC_008782.1 1322310 1323404 D TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: rme:Rmet_5948 lipoprotein signal peptidase; signal peptidase II 1322310..1323404 Acidovorax sp. JS42 4673920 YP_985545.1 CDS Ajs_1245 NC_008782.1 1323801 1325684 R PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein; relaxase complement(1323801..1325684) Acidovorax sp. JS42 4673930 YP_985546.1 CDS Ajs_1246 NC_008782.1 1325914 1326300 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bxe:Bxe_A1174 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1325914..1326300 Acidovorax sp. JS42 4673939 YP_985547.1 CDS Ajs_1247 NC_008782.1 1326300 1326758 D KEGG: bxe:Bxe_A1175 hypothetical protein; hypothetical protein 1326300..1326758 Acidovorax sp. JS42 4673941 YP_985548.1 CDS Ajs_1248 NC_008782.1 1326785 1327162 D KEGG: bxe:Bxe_A1176 hypothetical protein; hypothetical protein 1326785..1327162 Acidovorax sp. JS42 4673946 YP_985549.1 CDS Ajs_1249 NC_008782.1 1327178 1328695 R KEGG: bxe:Bxe_A1177 hypothetical protein; hypothetical protein complement(1327178..1328695) Acidovorax sp. JS42 4673923 YP_985550.1 CDS Ajs_1250 NC_008782.1 1328710 1329069 R KEGG: rme:Rmet_2359 hypothetical protein; hypothetical protein complement(1328710..1329069) Acidovorax sp. JS42 4673950 YP_985551.1 CDS Ajs_1251 NC_008782.1 1329066 1330460 R KEGG: rme:Rmet_2358 hypothetical protein; hypothetical protein complement(1329066..1330460) Acidovorax sp. JS42 4673944 YP_985552.1 CDS Ajs_1252 NC_008782.1 1330470 1331417 R PFAM: protein of unknown function DUF1527; KEGG: rme:Rmet_2357 protein of unknown function DUF1527; hypothetical protein complement(1330470..1331417) Acidovorax sp. JS42 4673969 YP_985553.1 CDS Ajs_1253 NC_008782.1 1331414 1331860 R PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525; hypothetical protein complement(1331414..1331860) Acidovorax sp. JS42 4673976 YP_985554.1 CDS Ajs_1254 NC_008782.1 1332024 1332518 R PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC; DNA repair protein RadC complement(1332024..1332518) Acidovorax sp. JS42 4673961 YP_985555.1 CDS Ajs_1255 NC_008782.1 1332698 1333462 R KEGG: rme:Rmet_2354 hypothetical protein; hypothetical protein complement(1332698..1333462) Acidovorax sp. JS42 4674038 YP_985556.1 CDS Ajs_1256 NC_008782.1 1333487 1336378 R KEGG: rme:Rmet_2353 hypothetical protein; hypothetical protein complement(1333487..1336378) Acidovorax sp. JS42 4673257 YP_985557.1 CDS Ajs_1257 NC_008782.1 1336378 1336827 R KEGG: rme:Rmet_2352 putative secreted protein; hypothetical protein complement(1336378..1336827) Acidovorax sp. JS42 4673878 YP_985558.1 CDS Ajs_1258 NC_008782.1 1336808 1338238 R KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein complement(1336808..1338238) Acidovorax sp. JS42 4673870 YP_985559.1 CDS Ajs_1259 NC_008782.1 1338228 1339136 R KEGG: rme:Rmet_2350 putative secreted protein; hypothetical protein complement(1338228..1339136) Acidovorax sp. JS42 4673324 YP_985560.1 CDS Ajs_1260 NC_008782.1 1339133 1339825 R KEGG: rme:Rmet_2349 putative secreted protein; hypothetical protein complement(1339133..1339825) Acidovorax sp. JS42 4673346 YP_985561.1 CDS Ajs_1261 NC_008782.1 1339822 1340220 R KEGG: rme:Rmet_2348 hypothetical protein; hypothetical protein complement(1339822..1340220) Acidovorax sp. JS42 4673201 YP_985562.1 CDS Ajs_1262 NC_008782.1 1340232 1340591 R KEGG: rme:Rmet_2347 hypothetical protein; hypothetical protein complement(1340232..1340591) Acidovorax sp. JS42 4673202 YP_985563.1 CDS Ajs_1263 NC_008782.1 1340608 1340841 R KEGG: bxe:Bxe_A1191 hypothetical protein; hypothetical protein complement(1340608..1340841) Acidovorax sp. JS42 4673184 YP_985564.1 CDS Ajs_1264 NC_008782.1 1340838 1341221 R KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD; hypothetical protein complement(1340838..1341221) Acidovorax sp. JS42 4673183 YP_985565.1 CDS Ajs_1265 NC_008782.1 1341425 1341895 D TIGRFAM: DNA binding domain, excisionase family; KEGG: rme:Rmet_2344 excisionase/Xis, DNA-binding; DNA-binding domain-containing protein 1341425..1341895 Acidovorax sp. JS42 4673171 YP_985566.1 CDS Ajs_1266 NC_008782.1 1341892 1342467 D KEGG: rme:Rmet_2343 hypothetical protein; hypothetical protein 1341892..1342467 Acidovorax sp. JS42 4673175 YP_985567.1 CDS Ajs_1267 NC_008782.1 1342485 1343399 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region; ATPase central domain-containing protein 1342485..1343399 Acidovorax sp. JS42 4673162 YP_985568.1 CDS Ajs_1268 NC_008782.1 1343396 1343866 D KEGG: rpe:RPE_2468 hypothetical protein; hypothetical protein 1343396..1343866 Acidovorax sp. JS42 4673164 YP_985569.1 CDS Ajs_1269 NC_008782.1 1343863 1344363 D KEGG: rme:Rmet_2341 hypothetical protein; hypothetical protein 1343863..1344363 Acidovorax sp. JS42 4673376 YP_985570.1 CDS Ajs_1270 NC_008782.1 1344363 1345265 D KEGG: rme:Rmet_2340 hypothetical protein; hypothetical protein 1344363..1345265 Acidovorax sp. JS42 4673141 YP_985571.1 CDS Ajs_1271 NC_008782.1 1345304 1346029 D KEGG: rme:Rmet_2339 hypothetical protein; hypothetical protein 1345304..1346029 Acidovorax sp. JS42 4673147 YP_985572.1 CDS Ajs_1272 NC_008782.1 1346039 1348663 D KEGG: rme:Rmet_2338 hypothetical protein; hypothetical protein 1346039..1348663 Acidovorax sp. JS42 4673135 YP_985573.1 CDS Ajs_1273 NC_008782.1 1348704 1349453 R KEGG: rme:Rmet_2337 hypothetical protein; hypothetical protein complement(1348704..1349453) Acidovorax sp. JS42 4673142 YP_985574.1 CDS Ajs_1274 NC_008782.1 1349450 1351642 R KEGG: bxe:Bxe_A1195 hypothetical protein; hypothetical protein complement(1349450..1351642) Acidovorax sp. JS42 4673136 YP_985575.1 CDS Ajs_1275 NC_008782.1 1351647 1352195 R KEGG: rme:Rmet_2335 putative secreted protein; hypothetical protein complement(1351647..1352195) Acidovorax sp. JS42 4673110 YP_985576.1 CDS Ajs_1276 NC_008782.1 1352192 1352782 R PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor; lytic transglycosylase catalytic subunit complement(1352192..1352782) Acidovorax sp. JS42 4673100 YP_985577.1 CDS Ajs_1277 NC_008782.1 1352764 1353489 R KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein complement(1352764..1353489) Acidovorax sp. JS42 4673389 YP_985578.1 CDS Ajs_1278 NC_008782.1 1353506 1354141 R KEGG: xcb:XC_2044 hypothetical protein; hypothetical protein complement(1353506..1354141) Acidovorax sp. JS42 4673117 YP_985579.1 CDS Ajs_1279 NC_008782.1 1354138 1354704 R KEGG: xcv:XCV2382 putative secreted protein; hypothetical protein complement(1354138..1354704) Acidovorax sp. JS42 4672712 YP_985580.1 CDS Ajs_1280 NC_008782.1 1354831 1355193 D SMART: regulatory protein, ArsR; KEGG: bbr:BB2784 putative transcriptional regulator; ArsR family transcriptional regulator 1354831..1355193 Acidovorax sp. JS42 4673403 YP_985581.1 CDS Ajs_1281 NC_008782.1 1355196 1355690 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mes:Meso_4199 protein tyrosine phosphatase; protein tyrosine phosphatase 1355196..1355690 Acidovorax sp. JS42 4673106 YP_985582.1 CDS Ajs_1282 NC_008782.1 1355701 1356777 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: net:Neut_2261 bile acid:sodium symporter; arsenical-resistance protein 1355701..1356777 Acidovorax sp. JS42 4673098 YP_985583.1 CDS Ajs_1283 NC_008782.1 1356794 1357216 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bbr:BB2782 arsenate reductase; arsenate reductase 1356794..1357216 Acidovorax sp. JS42 4672709 YP_985584.1 CDS Ajs_1284 NC_008782.1 1357200 1357931 D PFAM: NADPH-dependent FMN reductase; KEGG: bpa:BPP2717 putative NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1357200..1357931 Acidovorax sp. JS42 4673412 YP_985585.1 CDS Ajs_1285 NC_008782.1 1357990 1360269 R PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rme:Rmet_2330 helicase-like protein; helicase domain-containing protein complement(1357990..1360269) Acidovorax sp. JS42 4673438 YP_985586.1 CDS Ajs_1286 NC_008782.1 1360406 1360711 R KEGG: rme:Rmet_2329 hypothetical protein; hypothetical protein complement(1360406..1360711) Acidovorax sp. JS42 4673456 YP_985587.1 CDS Ajs_1287 NC_008782.1 1360801 1361121 R KEGG: xcv:XCV2388 hypothetical protein; hypothetical protein complement(1360801..1361121) Acidovorax sp. JS42 4673465 YP_985588.1 CDS Ajs_1288 NC_008782.1 1361173 1362321 R KEGG: xcv:XCV2389 hypothetical protein; hypothetical protein complement(1361173..1362321) Acidovorax sp. JS42 4673506 YP_985589.1 CDS Ajs_1289 NC_008782.1 1362347 1362994 R KEGG: xcv:XCV2390 hypothetical protein; hypothetical protein complement(1362347..1362994) Acidovorax sp. JS42 4673508 YP_985590.1 CDS Ajs_1290 NC_008782.1 1363071 1363331 R KEGG: xcv:XCV2391 hypothetical protein; hypothetical protein complement(1363071..1363331) Acidovorax sp. JS42 4673525 YP_985591.1 CDS Ajs_1291 NC_008782.1 1363348 1363755 R KEGG: xcv:XCV2392 hypothetical protein; hypothetical protein complement(1363348..1363755) Acidovorax sp. JS42 4673545 YP_985592.1 CDS Ajs_1292 NC_008782.1 1363856 1364179 R KEGG: xcv:XCV2393 hypothetical protein; hypothetical protein complement(1363856..1364179) Acidovorax sp. JS42 4673549 YP_985593.1 CDS Ajs_1293 NC_008782.1 1364272 1364961 R KEGG: rme:Rmet_2322 hypothetical protein; hypothetical protein complement(1364272..1364961) Acidovorax sp. JS42 4673574 YP_985594.1 CDS Ajs_1294 NC_008782.1 1365018 1365947 R KEGG: rme:Rmet_2320 hypothetical protein; hypothetical protein complement(1365018..1365947) Acidovorax sp. JS42 4673575 YP_985595.1 CDS Ajs_1296 NC_008782.1 1366850 1367110 R KEGG: rme:Rmet_2318 hypothetical protein; hypothetical protein complement(1366850..1367110) Acidovorax sp. JS42 4673649 YP_985596.1 CDS Ajs_1298 NC_008782.1 1368196 1369884 R TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: mca:MCA1340 mercuric reductase; putative mercuric reductase complement(1368196..1369884) Acidovorax sp. JS42 4673680 YP_985597.1 CDS Ajs_1299 NC_008782.1 1369895 1370182 R TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_2314 mercuric transport protein periplasmic component; mercuric transport protein periplasmic component complement(1369895..1370182) Acidovorax sp. JS42 4673692 YP_985598.1 CDS Ajs_1300 NC_008782.1 1370195 1370545 R PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_2313 mercuric transport protein MerT; putative mercuric transport protein complement(1370195..1370545) Acidovorax sp. JS42 4673739 YP_985599.1 CDS Ajs_1301 NC_008782.1 1370617 1371024 D TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_2312 transcriptional regulator, MerR family; MerR family transcriptional regulator 1370617..1371024 Acidovorax sp. JS42 4673743 YP_985600.1 CDS Ajs_1302 NC_008782.1 1371286 1372110 R KEGG: rme:Rmet_2311 hypothetical protein; hypothetical protein complement(1371286..1372110) Acidovorax sp. JS42 4673744 YP_985601.1 CDS Ajs_1303 NC_008782.1 1372399 1372677 R KEGG: rme:Rmet_2310 hypothetical protein; hypothetical protein complement(1372399..1372677) Acidovorax sp. JS42 4673747 YP_985602.1 CDS Ajs_1304 NC_008782.1 1372775 1373512 R KEGG: rme:Rmet_2309 hypothetical protein; hypothetical protein complement(1372775..1373512) Acidovorax sp. JS42 4673754 YP_985603.1 CDS Ajs_1305 NC_008782.1 1373596 1374282 R KEGG: rme:Rmet_2308 hypothetical protein; hypothetical protein complement(1373596..1374282) Acidovorax sp. JS42 4673758 YP_985604.1 CDS Ajs_1306 NC_008782.1 1374465 1374857 R KEGG: rme:Rmet_2307 hypothetical protein; hypothetical protein complement(1374465..1374857) Acidovorax sp. JS42 4673765 YP_985605.1 CDS Ajs_1308 NC_008782.1 1375434 1376192 R KEGG: xfa:XF1773 hypothetical protein; hypothetical protein complement(1375434..1376192) Acidovorax sp. JS42 4673821 YP_985606.1 CDS Ajs_1309 NC_008782.1 1376235 1377854 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase; C-5 cytosine-specific DNA methylase complement(1376235..1377854) Acidovorax sp. JS42 4673314 YP_985607.1 CDS Ajs_1311 NC_008782.1 1378380 1380392 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1378380..1380392) Acidovorax sp. JS42 4673832 YP_985608.1 CDS Ajs_1312 NC_008782.1 1380669 1381121 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1380669..1381121) Acidovorax sp. JS42 4673834 YP_985609.1 CDS Ajs_1313 NC_008782.1 1381195 1381722 R KEGG: bxe:Bxe_A1225 putative integrase regulator R protein; putative integrase regulator R protein complement(1381195..1381722) Acidovorax sp. JS42 4673907 YP_985610.1 CDS Ajs_1314 NC_008782.1 1381719 1382513 R KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein complement(1381719..1382513) Acidovorax sp. JS42 4673966 YP_985611.1 CDS Ajs_1315 NC_008782.1 1382944 1384179 R KEGG: rme:Rmet_2294 hypothetical protein; hypothetical protein complement(1382944..1384179) Acidovorax sp. JS42 4674141 YP_985612.1 CDS Ajs_1316 NC_008782.1 1384182 1384742 R KEGG: rme:Rmet_2293 hypothetical protein; hypothetical protein complement(1384182..1384742) Acidovorax sp. JS42 4674123 YP_985613.1 CDS Ajs_1317 NC_008782.1 1384757 1386436 R KEGG: rme:Rmet_2292 hypothetical protein; hypothetical protein complement(1384757..1386436) Acidovorax sp. JS42 4674108 YP_985614.1 CDS Ajs_1318 NC_008782.1 1386429 1386698 R KEGG: rme:Rmet_2291 hypothetical protein; hypothetical protein complement(1386429..1386698) Acidovorax sp. JS42 4674101 YP_985615.1 CDS Ajs_1319 NC_008782.1 1386682 1387557 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_2290 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(1386682..1387557) Acidovorax sp. JS42 4674065 YP_985616.1 CDS Ajs_1320 NC_008782.1 1387600 1387812 R PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_2289 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(1387600..1387812) Acidovorax sp. JS42 4674056 YP_985617.1 CDS Ajs_1321 NC_008782.1 1387931 1388677 R KEGG: rme:Rmet_2288 hypothetical protein; hypothetical protein complement(1387931..1388677) Acidovorax sp. JS42 4674068 YP_985618.1 CDS Ajs_1322 NC_008782.1 1389128 1389628 D PFAM: protein of unknown function DUF305; KEGG: rme:Rmet_2287 protein of unknown function DUF305; hypothetical protein 1389128..1389628 Acidovorax sp. JS42 4670573 YP_985619.1 CDS Ajs_1323 NC_008782.1 1389767 1392736 D PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 family protein 1389767..1392736 Acidovorax sp. JS42 4674018 YP_985620.1 CDS Ajs_1324 NC_008782.1 1392822 1393073 D TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ccr:CC2985 hypothetical protein; CopG/Arc/MetJ family transcriptional regulator 1392822..1393073 Acidovorax sp. JS42 4674726 YP_985621.1 CDS Ajs_1326 NC_008782.1 1393644 1393961 R PFAM: protein of unknown function UPF0060; KEGG: nmu:Nmul_A0351 hypothetical protein; hypothetical protein complement(1393644..1393961) Acidovorax sp. JS42 4674713 YP_985622.1 CDS Ajs_1327 NC_008782.1 1393966 1394502 R hypothetical protein complement(1393966..1394502) Acidovorax sp. JS42 4674709 YP_985623.1 CDS Ajs_1328 NC_008782.1 1394508 1394894 R KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein complement(1394508..1394894) Acidovorax sp. JS42 4674699 YP_985624.1 CDS Ajs_1329 NC_008782.1 1394934 1398053 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(1394934..1398053) Acidovorax sp. JS42 4674689 YP_985625.1 CDS Ajs_1330 NC_008782.1 1398055 1399173 R KEGG: dar:Daro_2618 hypothetical protein; hypothetical protein complement(1398055..1399173) Acidovorax sp. JS42 4674702 YP_985626.1 CDS Ajs_1331 NC_008782.1 1399170 1399730 R KEGG: dar:Daro_2619 hypothetical protein; hypothetical protein complement(1399170..1399730) Acidovorax sp. JS42 4674665 YP_985627.1 CDS Ajs_1332 NC_008782.1 1399789 1401114 R PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein; outer membrane efflux protein complement(1399789..1401114) Acidovorax sp. JS42 4674661 YP_985628.1 CDS Ajs_1333 NC_008782.1 1401279 1401641 R KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein complement(1401279..1401641) Acidovorax sp. JS42 4674663 YP_985629.1 CDS Ajs_1334 NC_008782.1 1401705 1402415 R KEGG: dsy:DSY0910 hypothetical protein; hypothetical protein complement(1401705..1402415) Acidovorax sp. JS42 4674668 YP_985630.1 CDS Ajs_1335 NC_008782.1 1402423 1404684 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1402423..1404684) Acidovorax sp. JS42 4674666 YP_985631.1 CDS Ajs_1336 NC_008782.1 1404762 1405202 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: dar:Daro_2633 Cd(II)/Pb(II)-responsive transcriptional regulator; MerR family transcriptional regulator 1404762..1405202 Acidovorax sp. JS42 4674647 YP_985632.1 CDS Ajs_1337 NC_008782.1 1405501 1407198 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: bma:BMAA1051 phage integrase family protein; phage integrase family protein 1405501..1407198 Acidovorax sp. JS42 4674660 YP_985633.1 CDS Ajs_1338 NC_008782.1 1407237 1407821 D KEGG: mlo:mlr6200 hypothetical protein; hypothetical protein 1407237..1407821 Acidovorax sp. JS42 4674640 YP_985634.1 CDS Ajs_1340 NC_008782.1 1408940 1410403 D PFAM: phage integrase family protein; KEGG: xcv:XCV2298 phage-related integrase; phage integrase family protein 1408940..1410403 Acidovorax sp. JS42 4674581 YP_985635.1 CDS Ajs_1341 NC_008782.1 1410398 1411162 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(1410398..1411162) Acidovorax sp. JS42 4674577 YP_985636.1 CDS Ajs_1342 NC_008782.1 1411159 1412754 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(1411159..1412754) Acidovorax sp. JS42 4674569 YP_985637.1 CDS Ajs_1344 NC_008782.1 1413518 1414159 R PFAM: LysR, substrate-binding; KEGG: xcv:XCV2299 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1413518..1414159) Acidovorax sp. JS42 4674549 YP_985638.1 CDS Ajs_1345 NC_008782.1 1414333 1414950 D KEGG: mag:amb3764 hypothetical protein; hypothetical protein 1414333..1414950 Acidovorax sp. JS42 4674542 YP_985639.1 CDS Ajs_1346 NC_008782.1 1414947 1416617 D PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 1414947..1416617 Acidovorax sp. JS42 4674533 YP_985640.1 CDS Ajs_1347 NC_008782.1 1416614 1417510 D PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 1416614..1417510 Acidovorax sp. JS42 4674544 YP_985641.1 CDS Ajs_1348 NC_008782.1 1417582 1419000 D KEGG: mag:amb3760 hypothetical protein; hypothetical protein 1417582..1419000 Acidovorax sp. JS42 4674519 YP_985642.1 CDS Ajs_1349 NC_008782.1 1419138 1419431 D PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2300 hypothetical protein; XRE family transcriptional regulator 1419138..1419431 Acidovorax sp. JS42 4674420 YP_985643.1 CDS Ajs_1350 NC_008782.1 1419438 1420328 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2301 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1419438..1420328) Acidovorax sp. JS42 4674517 YP_985644.1 CDS Ajs_1351 NC_008782.1 1420365 1420688 R KEGG: xcv:XCV2302 hypothetical protein; hypothetical protein complement(1420365..1420688) Acidovorax sp. JS42 4674518 YP_985645.1 CDS Ajs_1352 NC_008782.1 1420726 1422093 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1420726..1422093) Acidovorax sp. JS42 4674501 YP_985646.1 CDS Ajs_1353 NC_008782.1 1422134 1422940 R PFAM: protein of unknown function DUF81; KEGG: xcv:XCV2304 hypothetical protein; hypothetical protein complement(1422134..1422940) Acidovorax sp. JS42 4674504 YP_985647.1 CDS Ajs_1354 NC_008782.1 1422959 1423471 R KEGG: xcv:XCV2305 hypothetical protein; hypothetical protein complement(1422959..1423471) Acidovorax sp. JS42 4674467 YP_985648.1 CDS dsbG NC_008782.1 1423567 1424340 R Involved in disulfide bond formation; disulfide isomerase/thiol-disulfide oxidase complement(1423567..1424340) Acidovorax sp. JS42 4674479 YP_985649.1 CDS Ajs_1356 NC_008782.1 1424343 1425179 R PFAM: Redoxin domain protein; KEGG: xcv:XCV2307 putative thiol disulfide interchange protein; redoxin domain-containing protein complement(1424343..1425179) Acidovorax sp. JS42 4674468 YP_985650.1 CDS Ajs_1357 NC_008782.1 1425179 1427017 R PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: xcv:XCV2308 putative thiol:disulfide interchange protein; cytochrome c biogenesis protein transmembrane subunit complement(1425179..1427017) Acidovorax sp. JS42 4674058 YP_985651.1 CDS Ajs_1358 NC_008782.1 1427164 1427832 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV2309 two-component system regulatory protein; two component transcriptional regulator 1427164..1427832 Acidovorax sp. JS42 4674466 YP_985652.1 CDS Ajs_1359 NC_008782.1 1427829 1429187 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: xcv:XCV2310 two-component system sensor protein; integral membrane sensor signal transduction histidine kinase 1427829..1429187 Acidovorax sp. JS42 4674442 YP_985653.1 CDS Ajs_1360 NC_008782.1 1429251 1430249 R KEGG: xcv:XCV2311 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(1429251..1430249) Acidovorax sp. JS42 4674449 YP_985654.1 CDS Ajs_1361 NC_008782.1 1430252 1430770 R PFAM: Carboxymuconolactone decarboxylase; KEGG: xcv:XCV2312 hypothetical protein; carboxymuconolactone decarboxylase complement(1430252..1430770) Acidovorax sp. JS42 4674435 YP_985655.1 CDS Ajs_1362 NC_008782.1 1430854 1431174 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcv:XCV2313 putative thioredoxin; thioredoxin complement(1430854..1431174) Acidovorax sp. JS42 4674418 YP_985656.1 CDS Ajs_1363 NC_008782.1 1431365 1432048 D PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: xcv:XCV2314 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1431365..1432048 Acidovorax sp. JS42 4674426 YP_985657.1 CDS Ajs_1364 NC_008782.1 1432066 1432710 R PFAM: DSBA oxidoreductase; KEGG: xcv:XCV2315 putative thiol:disulfide interchange protein; DSBA oxidoreductase complement(1432066..1432710) Acidovorax sp. JS42 4674428 YP_985658.1 CDS Ajs_1365 NC_008782.1 1432774 1433673 R KEGG: xcv:XCV2316 putative secreted protein; hypothetical protein complement(1432774..1433673) Acidovorax sp. JS42 4674411 YP_985659.1 CDS Ajs_1366 NC_008782.1 1433812 1434276 R KEGG: xcv:XCV2317 putative secreted protein; hypothetical protein complement(1433812..1434276) Acidovorax sp. JS42 4674417 YP_985660.1 CDS Ajs_1367 NC_008782.1 1434386 1435363 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: xcv:XCV2318 tellurite-resistance/dicarboxylate transporter family protein; potassium-tellurite ethidium and proflavin transporter complement(1434386..1435363) Acidovorax sp. JS42 4674405 YP_985661.1 CDS Ajs_1368 NC_008782.1 1435451 1435708 R PFAM: Heavy metal transport/detoxification protein; KEGG: xcv:XCV2319 hypothetical protein; heavy metal transport/detoxification protein complement(1435451..1435708) Acidovorax sp. JS42 4674402 YP_985662.1 CDS Ajs_1369 NC_008782.1 1435867 1436952 R PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2339 putative major facilitator superfamily protein; major facilitator superfamily transporter complement(1435867..1436952) Acidovorax sp. JS42 4674400 YP_985663.1 CDS Ajs_1370 NC_008782.1 1437274 1438275 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter complement(1437274..1438275) Acidovorax sp. JS42 4674388 YP_985664.1 CDS Ajs_1371 NC_008782.1 1438464 1438817 R PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1438464..1438817) Acidovorax sp. JS42 4674381 YP_985665.1 CDS Ajs_1372 NC_008782.1 1438985 1441486 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase 1438985..1441486 Acidovorax sp. JS42 4674374 YP_985666.1 CDS Ajs_1373 NC_008782.1 1441502 1441981 D TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family; MerR family transcriptional regulator 1441502..1441981 Acidovorax sp. JS42 4674376 YP_985667.1 CDS Ajs_1374 NC_008782.1 1442055 1443284 R PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2334 putative major facilitator superfamily protein; major facilitator superfamily transporter complement(1442055..1443284) Acidovorax sp. JS42 4674361 YP_985668.1 CDS Ajs_1375 NC_008782.1 1443337 1444365 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2333 putative Zn-dependent alcohol dehydrogenase; alcohol dehydrogenase complement(1443337..1444365) Acidovorax sp. JS42 4674353 YP_985669.1 CDS Ajs_1376 NC_008782.1 1444402 1445580 R PFAM: aminotransferase, class I and II; KEGG: xcv:XCV2332 putative aminotransferase; class I/II aminotransferase complement(1444402..1445580) Acidovorax sp. JS42 4674349 YP_985670.1 CDS Ajs_1377 NC_008782.1 1445599 1446747 R PFAM: amine oxidase; KEGG: xcv:XCV2331 putative amine oxidase; amine oxidase complement(1445599..1446747) Acidovorax sp. JS42 4674347 YP_985671.1 CDS Ajs_1379 NC_008782.1 1447206 1448285 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1447206..1448285 Acidovorax sp. JS42 4674336 YP_985672.1 CDS Ajs_1380 NC_008782.1 1448388 1449467 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1448388..1449467 Acidovorax sp. JS42 4674332 YP_985673.1 CDS Ajs_1382 NC_008782.1 1451020 1451364 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_6446 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase complement(1451020..1451364) Acidovorax sp. JS42 4674324 YP_985674.1 CDS Ajs_1383 NC_008782.1 1451430 1451759 R KEGG: bam:Bamb_6447 hypothetical protein; hypothetical protein complement(1451430..1451759) Acidovorax sp. JS42 4674309 YP_985675.1 CDS Ajs_1384 NC_008782.1 1451784 1452557 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_6448 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1451784..1452557) Acidovorax sp. JS42 4674307 YP_985676.1 CDS Ajs_1385 NC_008782.1 1452758 1453693 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 1452758..1453693 Acidovorax sp. JS42 4674284 YP_985677.1 CDS Ajs_1386 NC_008782.1 1453950 1454447 D KEGG: xcv:XCV2355 hypothetical protein; hypothetical protein 1453950..1454447 Acidovorax sp. JS42 4674294 YP_985678.1 CDS Ajs_1387 NC_008782.1 1454512 1456494 R PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein; relaxase complement(1454512..1456494) Acidovorax sp. JS42 4674267 YP_985679.1 CDS Ajs_1388 NC_008782.1 1456658 1457284 D KEGG: xcv:XCV2357 hypothetical protein; hypothetical protein 1456658..1457284 Acidovorax sp. JS42 4674275 YP_985680.1 CDS Ajs_1389 NC_008782.1 1457297 1457914 D KEGG: xcv:XCV2358 hypothetical protein; hypothetical protein 1457297..1457914 Acidovorax sp. JS42 4674276 YP_985681.1 CDS Ajs_1390 NC_008782.1 1458014 1458376 D KEGG: xcv:XCV2359 hypothetical protein; hypothetical protein 1458014..1458376 Acidovorax sp. JS42 4674120 YP_985682.1 CDS Ajs_1391 NC_008782.1 1458383 1459906 R KEGG: xcv:XCV2360 hypothetical protein; hypothetical protein complement(1458383..1459906) Acidovorax sp. JS42 4674051 YP_985683.1 CDS Ajs_1392 NC_008782.1 1459921 1460292 R KEGG: xcv:XCV2361 hypothetical protein; hypothetical protein complement(1459921..1460292) Acidovorax sp. JS42 4674261 YP_985684.1 CDS Ajs_1393 NC_008782.1 1460289 1461686 R KEGG: xcv:XCV2362 hypothetical protein; hypothetical protein complement(1460289..1461686) Acidovorax sp. JS42 4674247 YP_985685.1 CDS Ajs_1394 NC_008782.1 1461696 1462643 R PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein; hypothetical protein complement(1461696..1462643) Acidovorax sp. JS42 4674168 YP_985686.1 CDS Ajs_1395 NC_008782.1 1462640 1463086 R PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525; hypothetical protein complement(1462640..1463086) Acidovorax sp. JS42 4674233 YP_985687.1 CDS Ajs_1396 NC_008782.1 1463250 1463744 R PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC; DNA repair protein RadC complement(1463250..1463744) Acidovorax sp. JS42 4674228 YP_985688.1 CDS Ajs_1397 NC_008782.1 1463924 1464709 R KEGG: xcv:XCV2366 hypothetical protein; hypothetical protein complement(1463924..1464709) Acidovorax sp. JS42 4674235 YP_985689.1 CDS Ajs_1398 NC_008782.1 1464723 1467590 R KEGG: xcv:XCV2367 hypothetical protein; hypothetical protein complement(1464723..1467590) Acidovorax sp. JS42 4674226 YP_985690.1 CDS Ajs_1399 NC_008782.1 1467590 1468030 R KEGG: xcv:XCV2368 putative secreted protein; hypothetical protein complement(1467590..1468030) Acidovorax sp. JS42 4674213 YP_985691.1 CDS Ajs_1400 NC_008782.1 1468011 1469441 R KEGG: rme:Rmet_2351 putative secreted protein; hypothetical protein complement(1468011..1469441) Acidovorax sp. JS42 4674207 YP_985692.1 CDS Ajs_1401 NC_008782.1 1469431 1470339 R KEGG: rme:Rmet_2350 putative secreted protein; hypothetical protein complement(1469431..1470339) Acidovorax sp. JS42 4674205 YP_985693.1 CDS Ajs_1402 NC_008782.1 1470336 1471028 R KEGG: rme:Rmet_2349 putative secreted protein; hypothetical protein complement(1470336..1471028) Acidovorax sp. JS42 4674196 YP_985694.1 CDS Ajs_1403 NC_008782.1 1471025 1471423 R KEGG: rme:Rmet_2348 hypothetical protein; hypothetical protein complement(1471025..1471423) Acidovorax sp. JS42 4674194 YP_985695.1 CDS Ajs_1404 NC_008782.1 1471435 1471794 R KEGG: rme:Rmet_2347 hypothetical protein; hypothetical protein complement(1471435..1471794) Acidovorax sp. JS42 4674174 YP_985696.1 CDS Ajs_1405 NC_008782.1 1471811 1472044 R KEGG: bxe:Bxe_A1191 hypothetical protein; hypothetical protein complement(1471811..1472044) Acidovorax sp. JS42 4674177 YP_985697.1 CDS Ajs_1406 NC_008782.1 1472041 1472421 R KEGG: xcv:XCV2375 putative secreted protein; hypothetical protein complement(1472041..1472421) Acidovorax sp. JS42 4674171 YP_985698.1 CDS Ajs_1407 NC_008782.1 1472520 1473269 R KEGG: xcv:XCV2376 hypothetical protein; hypothetical protein complement(1472520..1473269) Acidovorax sp. JS42 4674169 YP_985699.1 CDS Ajs_1408 NC_008782.1 1473266 1475458 R KEGG: bxe:Bxe_A1195 hypothetical protein; hypothetical protein complement(1473266..1475458) Acidovorax sp. JS42 4673736 YP_985700.1 CDS Ajs_1409 NC_008782.1 1475463 1476011 R KEGG: rme:Rmet_2335 putative secreted protein; hypothetical protein complement(1475463..1476011) Acidovorax sp. JS42 4673732 YP_985701.1 CDS Ajs_1410 NC_008782.1 1476008 1476598 R PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor; lytic transglycosylase catalytic subunit complement(1476008..1476598) Acidovorax sp. JS42 4673603 YP_985702.1 CDS Ajs_1411 NC_008782.1 1476580 1477305 R KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein complement(1476580..1477305) Acidovorax sp. JS42 4673285 YP_985703.1 CDS Ajs_1412 NC_008782.1 1477318 1477944 R KEGG: xcv:XCV2381 putative secreted protein; hypothetical protein complement(1477318..1477944) Acidovorax sp. JS42 4673283 YP_985704.1 CDS Ajs_1413 NC_008782.1 1477941 1478540 R KEGG: xcv:XCV2382 putative secreted protein; hypothetical protein complement(1477941..1478540) Acidovorax sp. JS42 4673523 YP_985705.1 CDS Ajs_1414 NC_008782.1 1478729 1479817 R KEGG: xcv:XCV2383 hypothetical protein; hypothetical protein complement(1478729..1479817) Acidovorax sp. JS42 4673520 YP_985706.1 CDS Ajs_1415 NC_008782.1 1479834 1481960 R PFAM: cytochrome c, class I; KEGG: xcv:XCV2384 putative cytochrome precursor; class I cytochrome c complement(1479834..1481960) Acidovorax sp. JS42 4673504 YP_985707.1 CDS Ajs_1416 NC_008782.1 1482357 1483043 R KEGG: xcv:XCV2385 hypothetical protein; hypothetical protein complement(1482357..1483043) Acidovorax sp. JS42 4673495 YP_985708.1 CDS Ajs_1417 NC_008782.1 1483155 1485434 R PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: xcv:XCV2386 putative helicase; helicase domain-containing protein complement(1483155..1485434) Acidovorax sp. JS42 4673479 YP_985709.1 CDS Ajs_1418 NC_008782.1 1485571 1485876 R KEGG: rme:Rmet_2329 hypothetical protein; hypothetical protein complement(1485571..1485876) Acidovorax sp. JS42 4673262 YP_985710.1 CDS Ajs_1419 NC_008782.1 1485966 1486286 R KEGG: rme:Rmet_2328 hypothetical protein; hypothetical protein complement(1485966..1486286) Acidovorax sp. JS42 4673445 YP_985711.1 CDS Ajs_1420 NC_008782.1 1486337 1487485 R KEGG: xcv:XCV2389 hypothetical protein; hypothetical protein complement(1486337..1487485) Acidovorax sp. JS42 4673102 YP_985712.1 CDS Ajs_1421 NC_008782.1 1487511 1488158 R KEGG: rme:Rmet_2326 hypothetical protein; hypothetical protein complement(1487511..1488158) Acidovorax sp. JS42 4673380 YP_985713.1 CDS Ajs_1423 NC_008782.1 1488439 1489401 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein 1488439..1489401 Acidovorax sp. JS42 4673374 YP_985714.1 CDS Ajs_1424 NC_008782.1 1489418 1489678 R KEGG: xcv:XCV2391 hypothetical protein; hypothetical protein complement(1489418..1489678) Acidovorax sp. JS42 4673371 YP_985715.1 CDS Ajs_1425 NC_008782.1 1489695 1490102 R KEGG: xfa:XF1758 hypothetical protein; hypothetical protein complement(1489695..1490102) Acidovorax sp. JS42 4673213 YP_985716.1 CDS Ajs_1426 NC_008782.1 1490209 1490550 R KEGG: rme:Rmet_2323 hypothetical protein; hypothetical protein complement(1490209..1490550) Acidovorax sp. JS42 4673341 YP_985717.1 CDS Ajs_1429 NC_008782.1 1492681 1493922 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 1492681..1493922 Acidovorax sp. JS42 4672966 YP_985718.1 CDS Ajs_1430 NC_008782.1 1493881 1494270 R KEGG: ecs:pO157p35 similar to SwissProt accession number P19593; SwissProt accession number P19593-like protein complement(1493881..1494270) Acidovorax sp. JS42 4672955 YP_985719.1 CDS Ajs_1431 NC_008782.1 1494669 1495757 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(1494669..1495757) Acidovorax sp. JS42 4672935 YP_985720.1 CDS Ajs_1433 NC_008782.1 1496191 1496409 R KEGG: xcv:XCV2394 hypothetical protein; hypothetical protein complement(1496191..1496409) Acidovorax sp. JS42 4672925 YP_985721.1 CDS Ajs_1434 NC_008782.1 1496467 1497384 R KEGG: xcv:XCV2395 hypothetical protein; hypothetical protein complement(1496467..1497384) Acidovorax sp. JS42 4672717 YP_985722.1 CDS Ajs_1435 NC_008782.1 1497750 1498103 R KEGG: xcv:XCV2396 hypothetical protein; hypothetical protein complement(1497750..1498103) Acidovorax sp. JS42 4672679 YP_985723.1 CDS Ajs_1436 NC_008782.1 1498183 1498404 R KEGG: xcv:XCV2397 hypothetical protein; hypothetical protein complement(1498183..1498404) Acidovorax sp. JS42 4672693 YP_985724.1 CDS Ajs_1437 NC_008782.1 1498401 1499213 R KEGG: xcv:XCV2398 hypothetical protein; hypothetical protein complement(1498401..1499213) Acidovorax sp. JS42 4672697 YP_985725.1 CDS Ajs_1438 NC_008782.1 1499496 1499774 R KEGG: xcv:XCV2399 hypothetical protein; hypothetical protein complement(1499496..1499774) Acidovorax sp. JS42 4672691 YP_985726.1 CDS Ajs_1439 NC_008782.1 1499872 1500609 R KEGG: xcv:XCV2400 hypothetical protein; hypothetical protein complement(1499872..1500609) Acidovorax sp. JS42 4672845 YP_985727.1 CDS Ajs_1440 NC_008782.1 1500689 1501375 R KEGG: xcv:XCV2401 hypothetical protein; hypothetical protein complement(1500689..1501375) Acidovorax sp. JS42 4672328 YP_985728.1 CDS Ajs_1441 NC_008782.1 1501521 1501913 R KEGG: rme:Rmet_2307 hypothetical protein; hypothetical protein complement(1501521..1501913) Acidovorax sp. JS42 4672288 YP_985729.1 CDS Ajs_1443 NC_008782.1 1502490 1503248 R KEGG: xfa:XF1773 hypothetical protein; hypothetical protein complement(1502490..1503248) Acidovorax sp. JS42 4672255 YP_985730.1 CDS Ajs_1444 NC_008782.1 1503291 1504910 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase; C-5 cytosine-specific DNA methylase complement(1503291..1504910) Acidovorax sp. JS42 4672253 YP_985731.1 CDS Ajs_1445 NC_008782.1 1505436 1507448 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1505436..1507448) Acidovorax sp. JS42 4672221 YP_985732.1 CDS Ajs_1446 NC_008782.1 1507725 1508177 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1507725..1508177) Acidovorax sp. JS42 4672206 YP_985733.1 CDS Ajs_1447 NC_008782.1 1508251 1508778 R KEGG: bxe:Bxe_A1225 putative integrase regulator R protein; putative integrase regulator R protein complement(1508251..1508778) Acidovorax sp. JS42 4672182 YP_985734.1 CDS Ajs_1448 NC_008782.1 1508775 1509569 R KEGG: rme:Rmet_2295 hypothetical protein; hypothetical protein complement(1508775..1509569) Acidovorax sp. JS42 4671974 YP_985735.1 CDS Ajs_1449 NC_008782.1 1510000 1511235 R KEGG: rme:Rmet_2294 hypothetical protein; hypothetical protein complement(1510000..1511235) Acidovorax sp. JS42 4671972 YP_985736.1 CDS Ajs_1450 NC_008782.1 1511238 1511798 R KEGG: xcv:XCV2411 hypothetical protein; hypothetical protein complement(1511238..1511798) Acidovorax sp. JS42 4672128 YP_985737.1 CDS Ajs_1451 NC_008782.1 1511814 1513469 R KEGG: xcv:XCV2412 hypothetical protein; hypothetical protein complement(1511814..1513469) Acidovorax sp. JS42 4671492 YP_985738.1 CDS Ajs_1452 NC_008782.1 1513462 1513710 R KEGG: xcv:XCV2413 hypothetical protein; hypothetical protein complement(1513462..1513710) Acidovorax sp. JS42 4672122 YP_985739.1 CDS Ajs_1453 NC_008782.1 1513694 1514569 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein; cobyrinic acid a,c-diamide synthase complement(1513694..1514569) Acidovorax sp. JS42 4671879 YP_985740.1 CDS Ajs_1454 NC_008782.1 1514612 1514824 R PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA complement(1514612..1514824) Acidovorax sp. JS42 4672091 YP_985741.1 CDS Ajs_1455 NC_008782.1 1514943 1515698 R KEGG: xcv:XCV2416 hypothetical protein; hypothetical protein complement(1514943..1515698) Acidovorax sp. JS42 4672073 YP_985742.1 CDS Ajs_1456 NC_008782.1 1517148 1517435 R KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein complement(1517148..1517435) Acidovorax sp. JS42 4671759 YP_985743.1 CDS Ajs_1457 NC_008782.1 1517557 1517823 D PFAM: transposase IS3/IS911 family protein; KEGG: xcb:XC_0859 IS1477 transposase ORFA; transposase IS3/IS911 family protein 1517557..1517823 Acidovorax sp. JS42 4671441 YP_985744.1 CDS Ajs_1459 NC_008782.1 1518853 1519833 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(1518853..1519833) Acidovorax sp. JS42 4671679 YP_985745.1 CDS Ajs_1460 NC_008782.1 1519984 1521369 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase complement(1519984..1521369) Acidovorax sp. JS42 4671428 YP_985746.1 CDS Ajs_1461 NC_008782.1 1521370 1522053 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator complement(1521370..1522053) Acidovorax sp. JS42 4671676 YP_985747.1 CDS Ajs_1463 NC_008782.1 1522384 1522728 D KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 1522384..1522728 Acidovorax sp. JS42 4671645 YP_985748.1 CDS Ajs_1464 NC_008782.1 1522818 1523291 D KEGG: ppu:PP_5391 hypothetical protein; hypothetical protein 1522818..1523291 Acidovorax sp. JS42 4671469 YP_985749.1 CDS Ajs_1465 NC_008782.1 1523317 1523601 D KEGG: ppu:PP_5390 hypothetical protein; hypothetical protein 1523317..1523601 Acidovorax sp. JS42 4671189 YP_985750.1 CDS Ajs_1466 NC_008782.1 1523598 1524266 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1523598..1524266 Acidovorax sp. JS42 4670574 YP_985751.1 CDS Ajs_1467 NC_008782.1 1524318 1524611 D PFAM: Heavy metal transport/detoxification protein; KEGG: mmc:Mmcs_3947 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 1524318..1524611 Acidovorax sp. JS42 4671590 YP_985752.1 CDS Ajs_1468 NC_008782.1 1524696 1524944 D KEGG: ana:asl7591 hypothetical protein; hypothetical protein 1524696..1524944 Acidovorax sp. JS42 4671574 YP_985753.1 CDS Ajs_1469 NC_008782.1 1524948 1527281 D KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase 1524948..1527281 Acidovorax sp. JS42 4671562 YP_985754.1 CDS Ajs_1470 NC_008782.1 1527302 1529140 D KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein 1527302..1529140 Acidovorax sp. JS42 4671550 YP_985755.1 CDS Ajs_1471 NC_008782.1 1529246 1530292 D TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1, heme region; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat; YVTN beta-propeller repeat-containing protein 1529246..1530292 Acidovorax sp. JS42 4671442 YP_985756.1 CDS Ajs_1472 NC_008782.1 1530373 1530957 D KEGG: mac:MA2063 hypothetical protein; hypothetical protein 1530373..1530957 Acidovorax sp. JS42 4671048 YP_985757.1 CDS Ajs_1473 NC_008782.1 1531200 1531535 R PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein; hypothetical protein complement(1531200..1531535) Acidovorax sp. JS42 4670558 YP_985758.1 CDS Ajs_1474 NC_008782.1 1531538 1531945 R TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: noc:Noc_2760 Hg(II)-responsive transcriptional regulator; MerR family transcriptional regulator complement(1531538..1531945) Acidovorax sp. JS42 4671042 YP_985759.1 CDS Ajs_1475 NC_008782.1 1531988 1532359 D PFAM: Mercuric transport protein MerT; KEGG: pol:Bpro_4797 mercuric transport protein MerT; putative mercuric transport protein 1531988..1532359 Acidovorax sp. JS42 4670989 YP_985760.1 CDS Ajs_1476 NC_008782.1 1532372 1532656 D TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: neu:NE0841 mercury scavenger protein:heavy-metal-associated domain; mercuric transport protein periplasmic component 1532372..1532656 Acidovorax sp. JS42 4670548 YP_985761.1 CDS Ajs_1478 NC_008782.1 1533181 1533336 D hypothetical protein 1533181..1533336 Acidovorax sp. JS42 4670963 YP_985762.1 CDS Ajs_1479 NC_008782.1 1533369 1534613 D KEGG: pol:Bpro_1182 membrane protein-like; membrane protein 1533369..1534613 Acidovorax sp. JS42 4670961 YP_985763.1 CDS Ajs_1480 NC_008782.1 1534671 1534919 D KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein 1534671..1534919 Acidovorax sp. JS42 4670944 YP_985764.1 CDS Ajs_1481 NC_008782.1 1534916 1536190 D PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein; outer membrane efflux protein 1534916..1536190 Acidovorax sp. JS42 4670923 YP_985765.1 CDS Ajs_1482 NC_008782.1 1536187 1537800 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD; RND family efflux transporter MFP subunit 1536187..1537800 Acidovorax sp. JS42 4670918 YP_985766.1 CDS Ajs_1483 NC_008782.1 1537816 1540947 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1537816..1540947 Acidovorax sp. JS42 4670875 YP_985767.1 CDS Ajs_1485 NC_008782.1 1541727 1542035 R TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE complement(1541727..1542035) Acidovorax sp. JS42 4670530 YP_985768.1 CDS Ajs_1486 NC_008782.1 1542464 1543726 D KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein 1542464..1543726 Acidovorax sp. JS42 4670528 YP_985769.1 CDS Ajs_1487 NC_008782.1 1543726 1544067 D hypothetical protein 1543726..1544067 Acidovorax sp. JS42 4670840 YP_985770.1 CDS Ajs_1490 NC_008782.1 1545501 1545752 D hypothetical protein 1545501..1545752 Acidovorax sp. JS42 4670765 YP_985771.1 CDS Ajs_1491 NC_008782.1 1545867 1546181 D KEGG: ana:asl7591 hypothetical protein; hypothetical protein 1545867..1546181 Acidovorax sp. JS42 4670754 YP_985772.1 CDS Ajs_1492 NC_008782.1 1546198 1546506 D PFAM: Heavy metal transport/detoxification protein; KEGG: bcn:Bcen_5366 heavy metal translocating P-type ATPase; heavy metal transport/detoxification protein 1546198..1546506 Acidovorax sp. JS42 4670704 YP_985773.1 CDS Ajs_1493 NC_008782.1 1546523 1547206 D KEGG: tbd:Tbd_1323 hypothetical protein; hypothetical protein 1546523..1547206 Acidovorax sp. JS42 4670672 YP_985774.1 CDS Ajs_1494 NC_008782.1 1547678 1548946 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: psp:PSPPH_5162 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 1547678..1548946 Acidovorax sp. JS42 4670505 YP_985775.1 CDS Ajs_1495 NC_008782.1 1549187 1551094 D KEGG: reu:Reut_C6194 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; FtsH-2 peptidase 1549187..1551094 Acidovorax sp. JS42 4674107 YP_985776.1 CDS Ajs_1497 NC_008782.1 1551569 1553995 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 1551569..1553995 Acidovorax sp. JS42 4674406 YP_985777.1 CDS Ajs_1499 NC_008782.1 1554548 1556170 R PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal; hypothetical protein complement(1554548..1556170) Acidovorax sp. JS42 4674727 YP_985778.1 CDS Ajs_1500 NC_008782.1 1556335 1556979 R KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein complement(1556335..1556979) Acidovorax sp. JS42 4670654 YP_985779.1 CDS Ajs_1504 NC_008782.1 1558602 1559198 R KEGG: son:SO3561 hypothetical protein; hypothetical protein complement(1558602..1559198) Acidovorax sp. JS42 4671055 YP_985780.1 CDS Ajs_1505 NC_008782.1 1559208 1560371 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mfa:Mfla_0261 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap complement(1559208..1560371) Acidovorax sp. JS42 4671137 YP_985781.1 CDS Ajs_1506 NC_008782.1 1560368 1561267 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(1560368..1561267) Acidovorax sp. JS42 4671317 YP_985782.1 CDS Ajs_1507 NC_008782.1 1561264 1562799 R catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase complement(1561264..1562799) Acidovorax sp. JS42 4671546 YP_985783.1 CDS Ajs_1508 NC_008782.1 1562796 1564154 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein complement(1562796..1564154) Acidovorax sp. JS42 4671611 YP_985784.1 CDS Ajs_1509 NC_008782.1 1564180 1564677 R PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477; hypothetical protein complement(1564180..1564677) Acidovorax sp. JS42 4671699 YP_985785.1 CDS Ajs_1510 NC_008782.1 1564680 1565558 R PFAM: protein of unknown function DUF477; KEGG: bpm:BURPS1710b_0509 lipoprotein, putative; hypothetical protein complement(1564680..1565558) Acidovorax sp. JS42 4671800 YP_985786.1 CDS Ajs_1511 NC_008782.1 1565555 1566169 R PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA; LemA family protein complement(1565555..1566169) Acidovorax sp. JS42 4672047 YP_985787.1 CDS Ajs_1512 NC_008782.1 1566172 1567497 R PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(1566172..1567497) Acidovorax sp. JS42 4672062 YP_985788.1 CDS Ajs_1513 NC_008782.1 1567547 1570000 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1567547..1570000) Acidovorax sp. JS42 4671853 YP_985789.1 CDS Ajs_1514 NC_008782.1 1570022 1570867 R PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein complement(1570022..1570867) Acidovorax sp. JS42 4672187 YP_985790.1 CDS Ajs_1519 NC_008782.1 1572859 1573947 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(1572859..1573947) Acidovorax sp. JS42 4672937 YP_985791.1 CDS Ajs_1521 NC_008782.1 1574583 1574918 D KEGG: dar:Daro_2332 hypothetical protein; hypothetical protein 1574583..1574918 Acidovorax sp. JS42 4674003 YP_985792.1 CDS Ajs_1523 NC_008782.1 1575551 1577734 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(1575551..1577734) Acidovorax sp. JS42 4673499 YP_985793.1 CDS Ajs_1524 NC_008782.1 1578073 1580844 R PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein; TraG domain-containing protein complement(1578073..1580844) Acidovorax sp. JS42 4673687 YP_985794.1 CDS Ajs_1525 NC_008782.1 1580866 1582314 R PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein; TraH family protein complement(1580866..1582314) Acidovorax sp. JS42 4673884 YP_985795.1 CDS Ajs_1526 NC_008782.1 1582324 1583199 R KEGG: eba:ebA6633 hypothetical protein; hypothetical protein complement(1582324..1583199) Acidovorax sp. JS42 4674050 YP_985796.1 CDS Ajs_1527 NC_008782.1 1583210 1583605 R KEGG: eba:ebA6631 hypothetical protein; hypothetical protein complement(1583210..1583605) Acidovorax sp. JS42 4674643 YP_985797.1 CDS Ajs_1528 NC_008782.1 1583596 1586013 R TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell; conjugal transfer mating pair stabilization protein TraN complement(1583596..1586013) Acidovorax sp. JS42 4674489 YP_985798.1 CDS Ajs_1529 NC_008782.1 1586023 1586775 R KEGG: dar:Daro_2659 hypothetical protein; hypothetical protein complement(1586023..1586775) Acidovorax sp. JS42 4673953 YP_985799.1 CDS Ajs_1530 NC_008782.1 1586762 1587787 R PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein; TraU family protein complement(1586762..1587787) Acidovorax sp. JS42 4673700 YP_985800.1 CDS Ajs_1531 NC_008782.1 1587784 1588422 R TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6618 hypothetical protein; membrane lipoprotein lipid attachment site complement(1587784..1588422) Acidovorax sp. JS42 4673287 YP_985801.1 CDS Ajs_1532 NC_008782.1 1588419 1588802 R KEGG: dar:Daro_2323 hypothetical protein; hypothetical protein complement(1588419..1588802) Acidovorax sp. JS42 4673510 YP_985802.1 CDS Ajs_1533 NC_008782.1 1588814 1589398 R KEGG: eba:ebA6617 hypothetical protein; hypothetical protein complement(1588814..1589398) Acidovorax sp. JS42 4673431 YP_985803.1 CDS Ajs_1534 NC_008782.1 1589395 1589751 R KEGG: eba:ebD17 hypothetical protein; hypothetical protein complement(1589395..1589751) Acidovorax sp. JS42 4673377 YP_985804.1 CDS Ajs_1535 NC_008782.1 1589748 1592330 R KEGG: dar:Daro_2653 hypothetical protein; hypothetical protein complement(1589748..1592330) Acidovorax sp. JS42 4673327 YP_985805.1 CDS Ajs_1536 NC_008782.1 1592338 1592979 R KEGG: eba:ebA6611 hypothetical protein; hypothetical protein complement(1592338..1592979) Acidovorax sp. JS42 4672993 YP_985806.1 CDS Ajs_1537 NC_008782.1 1592976 1593824 R KEGG: eba:ebA6610 periplasmic thiol:disulfide interchange protein; periplasmic thiol:disulfide interchange protein complement(1592976..1593824) Acidovorax sp. JS42 4672722 YP_985807.1 CDS Ajs_1538 NC_008782.1 1593808 1595226 R PFAM: TraB pilus assembly family protein; KEGG: eba:ebA6607 plasmid-like sex pilus assembly protein TraB; TraB pilus assembly family protein complement(1593808..1595226) Acidovorax sp. JS42 4672829 YP_985808.1 CDS Ajs_1539 NC_008782.1 1595223 1596230 R KEGG: eba:ebA6601 hypothetical protein; hypothetical protein complement(1595223..1596230) Acidovorax sp. JS42 4672384 YP_985809.1 CDS Ajs_1540 NC_008782.1 1596217 1596783 R KEGG: eba:ebA6600 plasmid-like conjugative transfer protein TraE; plasmid-like conjugative transfer protein TraE complement(1596217..1596783) Acidovorax sp. JS42 4672319 YP_985810.1 CDS Ajs_1541 NC_008782.1 1596798 1597097 R PFAM: TraL family protein; KEGG: dar:Daro_2647 TraL; TraL family protein complement(1596798..1597097) Acidovorax sp. JS42 4672258 YP_985811.1 CDS Ajs_1542 NC_008782.1 1597129 1597491 R KEGG: dar:Daro_2313 hypothetical protein; hypothetical protein complement(1597129..1597491) Acidovorax sp. JS42 4672213 YP_985812.1 CDS Ajs_1543 NC_008782.1 1597589 1598011 R hypothetical protein complement(1597589..1598011) Acidovorax sp. JS42 4672165 YP_985813.1 CDS Ajs_1544 NC_008782.1 1598008 1598535 R PFAM: Lytic transglycosylase, catalytic; KEGG: dar:Daro_2644 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(1598008..1598535) Acidovorax sp. JS42 4672152 YP_985814.1 CDS Ajs_1545 NC_008782.1 1598677 1599174 R KEGG: eba:ebA6591 hypothetical protein; hypothetical protein complement(1598677..1599174) Acidovorax sp. JS42 4672124 YP_985815.1 CDS Ajs_1546 NC_008782.1 1599378 1599686 R KEGG: dar:Daro_2232 hypothetical protein; hypothetical protein complement(1599378..1599686) Acidovorax sp. JS42 4671750 YP_985816.1 CDS Ajs_1547 NC_008782.1 1599827 1600099 D PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I3134 DNA-binding protein; helix-turn-helix domain-containing protein 1599827..1600099 Acidovorax sp. JS42 4671709 YP_985817.1 CDS Ajs_1548 NC_008782.1 1600115 1600738 R KEGG: dar:Daro_2308 hypothetical protein; hypothetical protein complement(1600115..1600738) Acidovorax sp. JS42 4671626 YP_985818.1 CDS Ajs_1549 NC_008782.1 1600735 1602636 R KEGG: dar:Daro_2307 hypothetical protein; hypothetical protein complement(1600735..1602636) Acidovorax sp. JS42 4671609 YP_985819.1 CDS Ajs_1550 NC_008782.1 1602638 1604431 R PFAM: Relaxase; KEGG: dar:Daro_2306 relaxase; FHA domain-containing protein complement(1602638..1604431) Acidovorax sp. JS42 4671417 YP_985820.1 CDS Ajs_1551 NC_008782.1 1604485 1605147 R KEGG: dar:Daro_2305 hypothetical protein; hypothetical protein complement(1604485..1605147) Acidovorax sp. JS42 4671527 YP_985821.1 CDS Ajs_1552 NC_008782.1 1605148 1605462 R KEGG: dar:Daro_2304 hypothetical protein; hypothetical protein complement(1605148..1605462) Acidovorax sp. JS42 4670559 YP_985822.1 CDS Ajs_1553 NC_008782.1 1605739 1606461 D PFAM: peptidase S24, S26A and S26B; KEGG: eci:UTI89_C5095 putative regulatory protein; putative phage repressor 1605739..1606461 Acidovorax sp. JS42 4670983 YP_985823.1 CDS Ajs_1554 NC_008782.1 1606545 1607609 R KEGG: dar:Daro_2292 hypothetical protein; hypothetical protein complement(1606545..1607609) Acidovorax sp. JS42 4670858 YP_985824.1 CDS Ajs_1555 NC_008782.1 1607621 1607923 D hypothetical protein 1607621..1607923 Acidovorax sp. JS42 4670825 YP_985825.1 CDS Ajs_1556 NC_008782.1 1607893 1608897 R SMART: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2291 hypothetical protein; phage P4 alpha zinc-binding domain-containing protein complement(1607893..1608897) Acidovorax sp. JS42 4670781 YP_985826.1 CDS Ajs_1557 NC_008782.1 1608884 1610521 R KEGG: dar:Daro_2290 ATP-binding region, ATPase-like; ATP-binding region, ATPase-like protein complement(1608884..1610521) Acidovorax sp. JS42 4670720 YP_985827.1 CDS Ajs_1558 NC_008782.1 1610588 1610926 R KEGG: dar:Daro_2571 hypothetical protein; hypothetical protein complement(1610588..1610926) Acidovorax sp. JS42 4670691 YP_985828.1 CDS Ajs_1559 NC_008782.1 1610923 1611144 R KEGG: dar:Daro_2288 hypothetical protein; hypothetical protein complement(1610923..1611144) Acidovorax sp. JS42 4670667 YP_985829.1 CDS Ajs_1560 NC_008782.1 1611178 1611759 R KEGG: dar:Daro_2287 hypothetical protein; hypothetical protein complement(1611178..1611759) Acidovorax sp. JS42 4670627 YP_985830.1 CDS Ajs_1561 NC_008782.1 1612250 1613035 D KEGG: dar:Daro_2286 hypothetical protein; hypothetical protein 1612250..1613035 Acidovorax sp. JS42 4674716 YP_985831.1 CDS Ajs_1562 NC_008782.1 1613465 1613704 D PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2566 prophage CP4-57 regulatory; phage transcriptional regulator AlpA 1613465..1613704 Acidovorax sp. JS42 4674625 YP_985832.1 CDS Ajs_1563 NC_008782.1 1613932 1615059 R hypothetical protein complement(1613932..1615059) Acidovorax sp. JS42 4670623 YP_985833.1 CDS Ajs_1564 NC_008782.1 1615232 1616500 R PFAM: protein of unknown function DUF1173; KEGG: dar:Daro_2244 protein of unknown function DUF1173; hypothetical protein complement(1615232..1616500) Acidovorax sp. JS42 4670628 YP_985834.1 CDS Ajs_1565 NC_008782.1 1616506 1617459 R PFAM: phage integrase family protein; KEGG: dar:Daro_2245 hypothetical protein; phage integrase family protein complement(1616506..1617459) Acidovorax sp. JS42 4670664 YP_985835.1 CDS Ajs_1566 NC_008782.1 1617751 1619034 D KEGG: dar:Daro_2239 hypothetical protein; hypothetical protein 1617751..1619034 Acidovorax sp. JS42 4670710 YP_985836.1 CDS Ajs_1567 NC_008782.1 1619046 1620326 D PFAM: metallophosphoesterase; KEGG: dar:Daro_2561 DNA repair exonuclease-like protein; metallophosphoesterase 1619046..1620326 Acidovorax sp. JS42 4670737 YP_985837.1 CDS Ajs_1568 NC_008782.1 1620424 1622751 R PFAM: protein of unknown function DUF450; hypothetical protein complement(1620424..1622751) Acidovorax sp. JS42 4670744 YP_985838.1 CDS Ajs_1569 NC_008782.1 1622792 1623757 R KEGG: bpm:BURPS1710b_2544 hypothetical protein; hypothetical protein complement(1622792..1623757) Acidovorax sp. JS42 4670773 YP_985839.1 CDS Ajs_1570 NC_008782.1 1623754 1624155 R KEGG: plt:Plut_1900 hypothetical protein; hypothetical protein complement(1623754..1624155) Acidovorax sp. JS42 4670809 YP_985840.1 CDS Ajs_1571 NC_008782.1 1624371 1626839 D KEGG: dar:Daro_2237 putative ATPase involved in DNA repair; putative DNA repair ATPase 1624371..1626839 Acidovorax sp. JS42 4670826 YP_985841.1 CDS Ajs_1572 NC_008782.1 1626891 1627199 R KEGG: dar:Daro_2232 hypothetical protein; hypothetical protein complement(1626891..1627199) Acidovorax sp. JS42 4670842 YP_985842.1 CDS Ajs_1573 NC_008782.1 1627741 1627953 D KEGG: dar:Daro_2230 hypothetical protein; hypothetical protein 1627741..1627953 Acidovorax sp. JS42 4670854 YP_985843.1 CDS Ajs_1574 NC_008782.1 1628033 1628545 R KEGG: dar:Daro_2227 hypothetical protein; hypothetical protein complement(1628033..1628545) Acidovorax sp. JS42 4670535 YP_985844.1 CDS Ajs_1575 NC_008782.1 1628672 1628902 D KEGG: dar:Daro_2226 hypothetical protein; hypothetical protein 1628672..1628902 Acidovorax sp. JS42 4670543 YP_985845.1 CDS Ajs_1576 NC_008782.1 1628873 1629391 R KEGG: dar:Daro_2225 hypothetical protein; hypothetical protein complement(1628873..1629391) Acidovorax sp. JS42 4670978 YP_985846.1 CDS Ajs_1577 NC_008782.1 1629842 1630963 R hypothetical protein complement(1629842..1630963) Acidovorax sp. JS42 4670556 YP_985847.1 CDS Ajs_1578 NC_008782.1 1631235 1636163 R PFAM: helicase domain protein; KEGG: dar:Daro_2221 helicase, C-terminal; helicase domain-containing protein complement(1631235..1636163) Acidovorax sp. JS42 4671533 YP_985848.1 CDS Ajs_1579 NC_008782.1 1636599 1636904 R KEGG: eba:ebB75 hypothetical protein; hypothetical protein complement(1636599..1636904) Acidovorax sp. JS42 4671567 YP_985849.1 CDS Ajs_1580 NC_008782.1 1637058 1637729 R KEGG: dar:Daro_2229 hypothetical protein; hypothetical protein complement(1637058..1637729) Acidovorax sp. JS42 4671418 YP_985850.1 CDS Ajs_1581 NC_008782.1 1637835 1638521 R KEGG: dar:Daro_2228 hypothetical protein; hypothetical protein complement(1637835..1638521) Acidovorax sp. JS42 4671622 YP_985851.1 CDS Ajs_1582 NC_008782.1 1638930 1639604 D KEGG: plu:plu1482 hypothetical protein; hypothetical protein 1638930..1639604 Acidovorax sp. JS42 4671648 YP_985852.1 CDS Ajs_1583 NC_008782.1 1639601 1640248 D KEGG: eba:ebA2475 hypothetical protein; hypothetical protein 1639601..1640248 Acidovorax sp. JS42 4671724 YP_985853.1 CDS Ajs_1584 NC_008782.1 1640335 1641957 D KEGG: rpa:RPA2566 putative EA59 gene protein, phage lambda; putative EA59 gene protein, phage lambda 1640335..1641957 Acidovorax sp. JS42 4671499 YP_985854.1 CDS Ajs_1585 NC_008782.1 1641959 1642804 D KEGG: rpa:RPA2567 possible EA31 gene protein, phage lambda; putative EA31 gene protein, phage lambda 1641959..1642804 Acidovorax sp. JS42 4672068 YP_985855.1 CDS Ajs_1586 NC_008782.1 1643095 1643709 D KEGG: dar:Daro_2544 hypothetical protein; hypothetical protein 1643095..1643709 Acidovorax sp. JS42 4672077 YP_985856.1 CDS Ajs_1587 NC_008782.1 1644072 1644572 D TIGRFAM: DNA binding domain, excisionase family; KEGG: ttj:TTHA1162 excisionase domain protein; DNA-binding domain-containing protein 1644072..1644572 Acidovorax sp. JS42 4672130 YP_985857.1 CDS Ajs_1588 NC_008782.1 1644569 1645183 D KEGG: rpc:RPC_4423 hypothetical protein; hypothetical protein 1644569..1645183 Acidovorax sp. JS42 4672160 YP_985858.1 CDS Ajs_1589 NC_008782.1 1645266 1645805 R PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1645266..1645805) Acidovorax sp. JS42 4672202 YP_985859.1 CDS Ajs_1590 NC_008782.1 1645904 1646404 D hypothetical protein 1645904..1646404 Acidovorax sp. JS42 4672261 YP_985860.1 CDS Ajs_1591 NC_008782.1 1646489 1648252 D TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_2542 ParB-like partition protein; ParB family protein 1646489..1648252 Acidovorax sp. JS42 4672015 YP_985861.1 CDS Ajs_1592 NC_008782.1 1648351 1648833 D KEGG: dar:Daro_2541 hypothetical protein; hypothetical protein 1648351..1648833 Acidovorax sp. JS42 4672274 YP_985862.1 CDS Ajs_1593 NC_008782.1 1648929 1649372 D KEGG: dar:Daro_2540 hypothetical protein; hypothetical protein 1648929..1649372 Acidovorax sp. JS42 4672346 YP_985863.1 CDS Ajs_1594 NC_008782.1 1649384 1650433 D KEGG: dar:Daro_2539 hypothetical protein; hypothetical protein 1649384..1650433 Acidovorax sp. JS42 4672774 YP_985864.1 CDS Ajs_1595 NC_008782.1 1650463 1651203 D KEGG: dar:Daro_2538 hypothetical protein; hypothetical protein 1650463..1651203 Acidovorax sp. JS42 4672779 YP_985865.1 CDS Ajs_1596 NC_008782.1 1651200 1651916 D KEGG: dar:Daro_2537 hypothetical protein; hypothetical protein 1651200..1651916 Acidovorax sp. JS42 4672813 YP_985866.1 CDS Ajs_1597 NC_008782.1 1651970 1652824 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_2536 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein 1651970..1652824 Acidovorax sp. JS42 4672816 YP_985867.1 CDS Ajs_1598 NC_008782.1 1653122 1653475 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_B5596 histone-like nucleoid-structuring protein H-NS; nucleoid protein H-NS 1653122..1653475 Acidovorax sp. JS42 4672825 YP_985868.1 CDS Ajs_1599 NC_008782.1 1653480 1654610 R KEGG: dar:Daro_2218 hypothetical protein; hypothetical protein complement(1653480..1654610) Acidovorax sp. JS42 4672839 YP_985869.1 CDS Ajs_1600 NC_008782.1 1655811 1656842 D KEGG: dar:Daro_2217 hypothetical protein; hypothetical protein 1655811..1656842 Acidovorax sp. JS42 4672867 YP_985870.1 CDS Ajs_1601 NC_008782.1 1656839 1657114 D KEGG: dar:Daro_2216 hypothetical protein; hypothetical protein 1656839..1657114 Acidovorax sp. JS42 4672945 YP_985871.1 CDS Ajs_1602 NC_008782.1 1657122 1657568 D KEGG: dar:Daro_2528 hypothetical protein; hypothetical protein 1657122..1657568 Acidovorax sp. JS42 4672973 YP_985872.1 CDS Ajs_1603 NC_008782.1 1657565 1658110 D KEGG: dar:Daro_2214 hypothetical protein; hypothetical protein 1657565..1658110 Acidovorax sp. JS42 4672999 YP_985873.1 CDS Ajs_1604 NC_008782.1 1658441 1659820 D PFAM: phage integrase family protein; KEGG: bxe:Bxe_C0409 putative phage integrase; phage integrase family protein 1658441..1659820 Acidovorax sp. JS42 4673336 YP_985874.1 CDS Ajs_1605 NC_008782.1 1660458 1660709 D hypothetical protein 1660458..1660709 Acidovorax sp. JS42 4673561 YP_985875.1 CDS Ajs_1606 NC_008782.1 1660811 1661569 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1660811..1661569) Acidovorax sp. JS42 4673622 YP_985876.1 CDS Ajs_1607 NC_008782.1 1661682 1662731 R PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_2758 extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1661682..1662731) Acidovorax sp. JS42 4673681 YP_985877.1 CDS Ajs_1608 NC_008782.1 1662915 1664756 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(1662915..1664756) Acidovorax sp. JS42 4673710 YP_985878.1 CDS Ajs_1609 NC_008782.1 1664969 1665322 D KEGG: pol:Bpro_3349 hypothetical protein; hypothetical protein 1664969..1665322 Acidovorax sp. JS42 4673735 YP_985879.1 CDS Ajs_1610 NC_008782.1 1665406 1665852 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1665406..1665852 Acidovorax sp. JS42 4674176 YP_985880.1 CDS Ajs_1611 NC_008782.1 1665846 1666736 D PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1665846..1666736 Acidovorax sp. JS42 4674200 YP_985881.1 CDS Ajs_1612 NC_008782.1 1666746 1667171 D PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor; class I peptide chain release factor 1666746..1667171 Acidovorax sp. JS42 4674223 YP_985882.1 CDS Ajs_1613 NC_008782.1 1667284 1668120 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_1860 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 1667284..1668120 Acidovorax sp. JS42 4674255 YP_985883.1 CDS Ajs_1614 NC_008782.1 1668146 1668811 D PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_1861 phospholipase/carboxylesterase; phospholipase/carboxylesterase 1668146..1668811 Acidovorax sp. JS42 4674140 YP_985884.1 CDS Ajs_1615 NC_008782.1 1668966 1669892 D KEGG: rfr:Rfer_1149 hypothetical protein; hypothetical protein 1668966..1669892 Acidovorax sp. JS42 4674344 YP_985885.1 CDS Ajs_1616 NC_008782.1 1669896 1670363 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1669896..1670363) Acidovorax sp. JS42 4674393 YP_985886.1 CDS Ajs_1617 NC_008782.1 1670420 1673137 D paralogs to the E1 component of pyruvate dehydrogenase subunit E1; 2-oxoacid dehydrogenase subunit E1 1670420..1673137 Acidovorax sp. JS42 4674463 YP_985887.1 CDS Ajs_1618 NC_008782.1 1673169 1674026 R PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980; hypothetical protein complement(1673169..1674026) Acidovorax sp. JS42 4674502 YP_985888.1 CDS Ajs_1619 NC_008782.1 1674031 1674813 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase; UDP-2,3-diacylglucosamine hydrolase complement(1674031..1674813) Acidovorax sp. JS42 4674512 YP_985889.1 CDS Ajs_1620 NC_008782.1 1674810 1675349 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1674810..1675349) Acidovorax sp. JS42 4674558 YP_985890.1 CDS Ajs_1621 NC_008782.1 1675368 1675955 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein; peptidylprolyl isomerase complement(1675368..1675955) Acidovorax sp. JS42 4674573 YP_985891.1 CDS Ajs_1622 NC_008782.1 1676037 1676609 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2; hypothetical protein complement(1676037..1676609) Acidovorax sp. JS42 4674698 YP_985892.1 CDS cysS NC_008782.1 1676863 1678239 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1676863..1678239 Acidovorax sp. JS42 4674710 YP_985893.1 CDS Ajs_1624 NC_008782.1 1678285 1678944 D PFAM: HhH-GPD family protein; KEGG: rfr:Rfer_1350 HhH-GPD; HhH-GPD family protein 1678285..1678944 Acidovorax sp. JS42 4674028 YP_985894.1 CDS Ajs_1625 NC_008782.1 1678993 1679970 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1678993..1679970 Acidovorax sp. JS42 4674034 YP_985895.1 CDS Ajs_1627 NC_008782.1 1682059 1683066 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: rfr:Rfer_1352 tRNA(Ile)-lysidine synthetase-like; tRNA(Ile)-lysidine synthetase 1682059..1683066 Acidovorax sp. JS42 4673996 YP_985896.1 CDS Ajs_1628 NC_008782.1 1683104 1684372 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1683104..1684372 Acidovorax sp. JS42 4673845 YP_985897.1 CDS Ajs_1629 NC_008782.1 1684576 1685055 R KEGG: rfr:Rfer_1219 hypothetical protein; hypothetical protein complement(1684576..1685055) Acidovorax sp. JS42 4673702 YP_985898.1 CDS Ajs_1630 NC_008782.1 1685111 1687480 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase complement(1685111..1687480) Acidovorax sp. JS42 4673146 YP_985899.1 CDS Ajs_1631 NC_008782.1 1687578 1688507 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bte:BTH_I1605 transcriptional regulator MetR; LysR family transcriptional regulator 1687578..1688507 Acidovorax sp. JS42 4673169 YP_985900.1 CDS Ajs_1632 NC_008782.1 1688554 1689414 R KEGG: bur:Bcep18194_B1614 PEP phosphonomutase; 2,3-dimethylmalate lyase complement(1688554..1689414) Acidovorax sp. JS42 4673073 YP_985901.1 CDS Ajs_1633 NC_008782.1 1689866 1691068 R TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: xcv:XCV1160 hypothetical protein; methylitaconate delta2-delta3-isomerase complement(1689866..1691068) Acidovorax sp. JS42 4673014 YP_985902.1 CDS acnA NC_008782.1 1691082 1693754 R catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1691082..1693754) Acidovorax sp. JS42 4672851 YP_985903.1 CDS Ajs_1635 NC_008782.1 1693861 1695021 R catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase complement(1693861..1695021) Acidovorax sp. JS42 4672794 YP_985904.1 CDS Ajs_1636 NC_008782.1 1695018 1695434 R PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_3513 thioesterase superfamily; thioesterase superfamily protein complement(1695018..1695434) Acidovorax sp. JS42 4673094 YP_985905.1 CDS Ajs_1637 NC_008782.1 1695536 1697008 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rru:Rru_A2316 transcriptional regulator, XRE family; XRE family transcriptional regulator 1695536..1697008 Acidovorax sp. JS42 4672559 YP_985906.1 CDS Ajs_1638 NC_008782.1 1697145 1697447 D hypothetical protein 1697145..1697447 Acidovorax sp. JS42 4672428 YP_985907.1 CDS Ajs_1639 NC_008782.1 1697572 1697997 R PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4; RNA-binding S4 domain-containing protein complement(1697572..1697997) Acidovorax sp. JS42 4672386 YP_985908.1 CDS Ajs_1640 NC_008782.1 1698038 1699441 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1698038..1699441) Acidovorax sp. JS42 4672020 YP_985909.1 CDS Ajs_1641 NC_008782.1 1699614 1700345 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(1699614..1700345) Acidovorax sp. JS42 4672144 YP_985910.1 CDS Ajs_1642 NC_008782.1 1700448 1701407 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065; hypothetical protein 1700448..1701407 Acidovorax sp. JS42 4672467 YP_985911.1 CDS Ajs_1643 NC_008782.1 1701541 1702092 D KEGG: pol:Bpro_2010 hypothetical protein; hypothetical protein 1701541..1702092 Acidovorax sp. JS42 4672049 YP_985912.1 CDS Ajs_1644 NC_008782.1 1702183 1703712 D PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane; hypothetical protein 1702183..1703712 Acidovorax sp. JS42 4671900 YP_985913.1 CDS Ajs_1645 NC_008782.1 1703940 1704278 D KEGG: bxe:Bxe_B2979 sigma54 specific transcriptional regulator containing PAS, fis family; hypothetical protein 1703940..1704278 Acidovorax sp. JS42 4671818 YP_985914.1 CDS Ajs_1646 NC_008782.1 1704238 1705116 D PFAM: alpha/beta hydrolase fold; KEGG: bpe:BP3623 putative hydrolase; alpha/beta hydrolase fold protein 1704238..1705116 Acidovorax sp. JS42 4671788 YP_985915.1 CDS Ajs_1647 NC_008782.1 1705279 1706238 D PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1362 rhodanese-like; rhodanese domain-containing protein 1705279..1706238 Acidovorax sp. JS42 4671727 YP_985916.1 CDS Ajs_1648 NC_008782.1 1706309 1706476 R hypothetical protein complement(1706309..1706476) Acidovorax sp. JS42 4671570 YP_985917.1 CDS Ajs_1649 NC_008782.1 1706496 1707593 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rsp:RSP_2739 hypothetical protein; hypothetical protein complement(1706496..1707593) Acidovorax sp. JS42 4671144 YP_985918.1 CDS Ajs_1650 NC_008782.1 1707701 1708654 R PFAM: Rhodanese domain protein; KEGG: rsp:RSP_2738 probable rhodanese-related sulfurtransferase; rhodanese domain-containing protein complement(1707701..1708654) Acidovorax sp. JS42 4671081 YP_985919.1 CDS Ajs_1652 NC_008782.1 1711239 1712297 R PFAM: ferrochelatase; KEGG: pol:Bpro_2013 ferrochelatase; ferrochelatase complement(1711239..1712297) Acidovorax sp. JS42 4670924 YP_985920.1 CDS Ajs_1653 NC_008782.1 1712337 1713029 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase 1712337..1713029 Acidovorax sp. JS42 4670830 YP_985921.1 CDS Ajs_1654 NC_008782.1 1713042 1715780 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pae:PA1429 probable cation-transporting P-type ATPase; HAD superfamily P-type ATPase complement(1713042..1715780) Acidovorax sp. JS42 4670746 YP_985922.1 CDS Ajs_1655 NC_008782.1 1716127 1716948 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(1716127..1716948) Acidovorax sp. JS42 4670688 YP_985923.1 CDS Ajs_1656 NC_008782.1 1716948 1718261 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1716948..1718261) Acidovorax sp. JS42 4670607 YP_985924.1 CDS Ajs_1657 NC_008782.1 1718360 1718815 D PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain; XRE family transcriptional regulator 1718360..1718815 Acidovorax sp. JS42 4670600 YP_985925.1 CDS Ajs_1658 NC_008782.1 1718909 1720009 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1718909..1720009 Acidovorax sp. JS42 4670993 YP_985926.1 CDS nrdR NC_008782.1 1720086 1720535 R PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193; transcriptional regulator NrdR complement(1720086..1720535) Acidovorax sp. JS42 4671057 YP_985927.1 CDS glyA NC_008782.1 1720548 1721792 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1720548..1721792) Acidovorax sp. JS42 4671096 YP_985928.1 CDS Ajs_1661 NC_008782.1 1722030 1722869 R PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(1722030..1722869) Acidovorax sp. JS42 4671157 YP_985929.1 CDS Ajs_1662 NC_008782.1 1723588 1727295 D PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748; hypothetical protein 1723588..1727295 Acidovorax sp. JS42 4671160 YP_985930.1 CDS Ajs_1663 NC_008782.1 1727504 1730191 D KEGG: rfr:Rfer_2656 hypothetical protein; hypothetical protein 1727504..1730191 Acidovorax sp. JS42 4671338 YP_985931.1 CDS Ajs_1664 NC_008782.1 1730261 1730824 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(1730261..1730824) Acidovorax sp. JS42 4670596 YP_985932.1 CDS Ajs_1665 NC_008782.1 1730969 1731475 R hypothetical protein complement(1730969..1731475) Acidovorax sp. JS42 4671524 YP_985933.1 CDS Ajs_1666 NC_008782.1 1731547 1732371 D PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_2850 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1731547..1732371 Acidovorax sp. JS42 4671327 YP_985934.1 CDS Ajs_1667 NC_008782.1 1732389 1732649 D hypothetical protein 1732389..1732649 Acidovorax sp. JS42 4671251 YP_985935.1 CDS psd NC_008782.1 1732680 1733561 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(1732680..1733561) Acidovorax sp. JS42 4671608 YP_985936.1 CDS Ajs_1669 NC_008782.1 1733742 1734911 D PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: pol:Bpro_0211 CBS domain containing membrane protein; CBS domain-containing protein 1733742..1734911 Acidovorax sp. JS42 4671739 YP_985937.1 CDS infA NC_008782.1 1735148 1735414 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1735148..1735414 Acidovorax sp. JS42 4671783 YP_985938.1 CDS Ajs_1671 NC_008782.1 1735730 1736032 D hypothetical protein 1735730..1736032 Acidovorax sp. JS42 4671830 YP_985939.1 CDS Ajs_1672 NC_008782.1 1736179 1736949 D PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624; hypothetical protein 1736179..1736949 Acidovorax sp. JS42 4671950 YP_985940.1 CDS Ajs_1673 NC_008782.1 1736999 1737784 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1736999..1737784) Acidovorax sp. JS42 4671898 YP_985941.1 CDS Ajs_1674 NC_008782.1 1737852 1738130 R PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein; transcriptional regulator BolA complement(1737852..1738130) Acidovorax sp. JS42 4672072 YP_985942.1 CDS Ajs_1675 NC_008782.1 1738127 1738687 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(1738127..1738687) Acidovorax sp. JS42 4671880 YP_985943.1 CDS Ajs_1676 NC_008782.1 1738684 1739097 R KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(1738684..1739097) Acidovorax sp. JS42 4671982 YP_985944.1 CDS Ajs_1677 NC_008782.1 1739094 1740581 R PFAM: protein of unknown function UPF0061; KEGG: rfr:Rfer_2395 protein of unknown function UPF0061; hypothetical protein complement(1739094..1740581) Acidovorax sp. JS42 4672339 YP_985945.1 CDS Ajs_1678 NC_008782.1 1740754 1742391 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1740754..1742391 Acidovorax sp. JS42 4672395 YP_985946.1 CDS Ajs_1679 NC_008782.1 1742529 1743764 D PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_2391 extracellular ligand-binding receptor; extracellular ligand-binding receptor 1742529..1743764 Acidovorax sp. JS42 4672431 YP_985947.1 CDS Ajs_1680 NC_008782.1 1743840 1744793 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2390 inner-membrane translocator; inner-membrane translocator 1743840..1744793 Acidovorax sp. JS42 4672448 YP_985948.1 CDS Ajs_1681 NC_008782.1 1744800 1746137 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2389 inner-membrane translocator; inner-membrane translocator 1744800..1746137 Acidovorax sp. JS42 4672557 YP_985949.1 CDS Ajs_1682 NC_008782.1 1746137 1746919 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related; ABC transporter-like protein 1746137..1746919 Acidovorax sp. JS42 4672591 YP_985950.1 CDS Ajs_1683 NC_008782.1 1746923 1747618 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related; ABC transporter-like protein 1746923..1747618 Acidovorax sp. JS42 4672599 YP_985951.1 CDS Ajs_1684 NC_008782.1 1747811 1749910 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 1747811..1749910 Acidovorax sp. JS42 4673165 YP_985952.1 CDS Ajs_1685 NC_008782.1 1749956 1751131 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1749956..1751131 Acidovorax sp. JS42 4672765 YP_985953.1 CDS Ajs_1686 NC_008782.1 1751473 1752657 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein; diguanylate cyclase 1751473..1752657 Acidovorax sp. JS42 4672576 YP_985954.1 CDS Ajs_1687 NC_008782.1 1752727 1754655 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 1752727..1754655 Acidovorax sp. JS42 4672809 YP_985955.1 CDS Ajs_1688 NC_008782.1 1754716 1755216 D KEGG: reu:Reut_B3490 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1754716..1755216 Acidovorax sp. JS42 4672818 YP_985956.1 CDS Ajs_1689 NC_008782.1 1755644 1757215 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1824 phosphonate uptake transporter; phosphonate ABC transporter inner membrane subunit complement(1755644..1757215) Acidovorax sp. JS42 4672864 YP_985957.1 CDS Ajs_1690 NC_008782.1 1757206 1758039 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1825 ABC transporter related; ABC transporter-like protein complement(1757206..1758039) Acidovorax sp. JS42 4672871 YP_985958.1 CDS Ajs_1691 NC_008782.1 1758161 1759051 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: dar:Daro_1826 phosphonate-binding periplasmic protein; phosphonate ABC transporter periplasmic phosphonate-binding protein complement(1758161..1759051) Acidovorax sp. JS42 4672948 YP_985959.1 CDS Ajs_1692 NC_008782.1 1759177 1760535 R PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH2694 transporter; major facilitator superfamily transporter complement(1759177..1760535) Acidovorax sp. JS42 4672978 YP_985960.1 CDS Ajs_1693 NC_008782.1 1760620 1761753 R PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1760620..1761753) Acidovorax sp. JS42 4673172 YP_985961.1 CDS Ajs_1695 NC_008782.1 1762987 1763778 D Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; gluconate 5-dehydrogenase 1762987..1763778 Acidovorax sp. JS42 4673167 YP_985962.1 CDS Ajs_1696 NC_008782.1 1763815 1764258 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein; hypothetical protein 1763815..1764258 Acidovorax sp. JS42 4673397 YP_985963.1 CDS Ajs_1697 NC_008782.1 1764346 1765362 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2491 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 1764346..1765362 Acidovorax sp. JS42 4673471 YP_985964.1 CDS Ajs_1698 NC_008782.1 1765359 1765823 D PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_0671 ElaA protein; GCN5-like N-acetyltransferase 1765359..1765823 Acidovorax sp. JS42 4673554 YP_985965.1 CDS Ajs_1699 NC_008782.1 1765872 1766798 D KEGG: rfr:Rfer_2490 putative glutathione S-transferase-related protein; putative glutathione S-transferase-like protein 1765872..1766798 Acidovorax sp. JS42 4673310 YP_985966.1 CDS Ajs_1700 NC_008782.1 1766833 1767738 D probable dehydrogenase; hypothetical protein 1766833..1767738 Acidovorax sp. JS42 4673806 YP_985967.1 CDS Ajs_1701 NC_008782.1 1767849 1768487 R PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein; hypothetical protein complement(1767849..1768487) Acidovorax sp. JS42 4673886 YP_985968.1 CDS Ajs_1702 NC_008782.1 1768719 1769957 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PE00015 putative drug transporter protein, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 1768719..1769957 Acidovorax sp. JS42 4673883 YP_985969.1 CDS Ajs_1703 NC_008782.1 1769954 1771360 D PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB2369 MFS superfamily multidrug efflux transporter; major facilitator superfamily transporter 1769954..1771360 Acidovorax sp. JS42 4673871 YP_985970.1 CDS Ajs_1704 NC_008782.1 1771506 1772603 R PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein; hypothetical protein complement(1771506..1772603) Acidovorax sp. JS42 4673922 YP_985971.1 CDS Ajs_1705 NC_008782.1 1772607 1773014 R KEGG: reu:Reut_A1851 hypothetical protein; hypothetical protein complement(1772607..1773014) Acidovorax sp. JS42 4674657 YP_985972.1 CDS Ajs_1706 NC_008782.1 1773011 1774534 R PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein; hypothetical protein complement(1773011..1774534) Acidovorax sp. JS42 4674471 YP_985973.1 CDS Ajs_1707 NC_008782.1 1774586 1776982 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1; RNA-binding S1 domain-containing protein 1774586..1776982 Acidovorax sp. JS42 4674430 YP_985974.1 CDS Ajs_1708 NC_008782.1 1777055 1777879 D PFAM: HDOD; KEGG: rfr:Rfer_2482 putative signal transduction protein; putative signal transduction protein 1777055..1777879 Acidovorax sp. JS42 4674300 YP_985975.1 CDS Ajs_1709 NC_008782.1 1777908 1779053 D KEGG: ppu:PP_2344 hypothetical protein; hypothetical protein 1777908..1779053 Acidovorax sp. JS42 4674199 YP_985976.1 CDS Ajs_1710 NC_008782.1 1779084 1780535 R PFAM: histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sus:Acid_0021 multi-sensor signal transduction histidine kinase; putative PAS/PAC sensor protein complement(1779084..1780535) Acidovorax sp. JS42 4673302 YP_985977.1 CDS Ajs_1711 NC_008782.1 1780640 1781776 R PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(1780640..1781776) Acidovorax sp. JS42 4673300 YP_985978.1 CDS Ajs_1712 NC_008782.1 1781839 1782714 D PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_4183 hydratase/decarboxylase; hydratase/decarboxylase 1781839..1782714 Acidovorax sp. JS42 4673297 YP_985979.1 CDS Ajs_1713 NC_008782.1 1782731 1783720 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3; alpha/beta hydrolase domain-containing protein 1782731..1783720 Acidovorax sp. JS42 4673645 YP_985980.1 CDS Ajs_1714 NC_008782.1 1783742 1784605 D PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 1783742..1784605 Acidovorax sp. JS42 4673557 YP_985981.1 CDS Ajs_1715 NC_008782.1 1784665 1785600 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rfr:Rfer_2253 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(1784665..1785600) Acidovorax sp. JS42 4673543 YP_985982.1 CDS Ajs_1716 NC_008782.1 1785646 1786647 D PFAM: aminodeoxychorismate lyase; KEGG: rfr:Rfer_2254 aminodeoxychorismate lyase; aminodeoxychorismate lyase 1785646..1786647 Acidovorax sp. JS42 4673507 YP_985983.1 CDS tmk NC_008782.1 1786644 1787297 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1786644..1787297 Acidovorax sp. JS42 4673477 YP_985984.1 CDS Ajs_1718 NC_008782.1 1787294 1788289 D KEGG: rfr:Rfer_2256 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1787294..1788289 Acidovorax sp. JS42 4673253 YP_985985.1 CDS Ajs_1719 NC_008782.1 1788306 1788665 D PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1788306..1788665 Acidovorax sp. JS42 4673116 YP_985986.1 CDS Ajs_1720 NC_008782.1 1788739 1789548 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_2258 TatD-related deoxyribonuclease; TatD family hydrolase 1788739..1789548 Acidovorax sp. JS42 4672729 YP_985987.1 CDS Ajs_1721 NC_008782.1 1789545 1790231 D PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin; ankyrin 1789545..1790231 Acidovorax sp. JS42 4672883 YP_985988.1 CDS Ajs_1722 NC_008782.1 1790355 1792139 R KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(1790355..1792139) Acidovorax sp. JS42 4672674 YP_985989.1 CDS tolB NC_008782.1 1792252 1793583 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1792252..1793583 Acidovorax sp. JS42 4672754 YP_985990.1 CDS Ajs_1724 NC_008782.1 1793623 1794165 D TIGRFAM: TonB box domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB; TonB box domain-containing protein 1793623..1794165 Acidovorax sp. JS42 4672370 YP_985991.1 CDS Ajs_1725 NC_008782.1 1794165 1794950 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_2094 tetratricopeptide TPR_2; hypothetical protein 1794165..1794950 Acidovorax sp. JS42 4672012 YP_985992.1 CDS Ajs_1726 NC_008782.1 1794947 1795729 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rfr:Rfer_2095 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 1794947..1795729 Acidovorax sp. JS42 4672251 YP_985993.1 CDS Ajs_1727 NC_008782.1 1796105 1796374 R hypothetical protein complement(1796105..1796374) Acidovorax sp. JS42 4671981 YP_985994.1 CDS Ajs_1728 NC_008782.1 1796361 1796789 R KEGG: eba:ebB20 hypothetical protein; hypothetical protein complement(1796361..1796789) Acidovorax sp. JS42 4671776 YP_985995.1 CDS Ajs_1729 NC_008782.1 1796811 1797251 R hypothetical protein complement(1796811..1797251) Acidovorax sp. JS42 4671735 YP_985996.1 CDS Ajs_1730 NC_008782.1 1797273 1797983 R KEGG: tbd:Tbd_2678 hypothetical protein; hypothetical protein complement(1797273..1797983) Acidovorax sp. JS42 4671711 YP_985997.1 CDS Ajs_1731 NC_008782.1 1797986 1798288 R hypothetical protein complement(1797986..1798288) Acidovorax sp. JS42 4671710 YP_985998.1 CDS Ajs_1732 NC_008782.1 1798285 1798722 R hypothetical protein complement(1798285..1798722) Acidovorax sp. JS42 4671619 YP_985999.1 CDS Ajs_1733 NC_008782.1 1798805 1799542 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(1798805..1799542) Acidovorax sp. JS42 4671585 YP_986000.1 CDS Ajs_1735 NC_008782.1 1800834 1802060 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 1800834..1802060 Acidovorax sp. JS42 4670557 YP_986001.1 CDS Ajs_1736 NC_008782.1 1802098 1802712 R KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit complement(1802098..1802712) Acidovorax sp. JS42 4670995 YP_986002.1 CDS Ajs_1737 NC_008782.1 1803000 1803251 R KEGG: pol:Bpro_1532 hypothetical protein; hypothetical protein complement(1803000..1803251) Acidovorax sp. JS42 4670950 YP_986003.1 CDS Ajs_1738 NC_008782.1 1803552 1803707 D KEGG: xcv:XCVc0009 transposase, mutator family; transposase mutator family protein 1803552..1803707 Acidovorax sp. JS42 4670537 YP_986004.1 CDS Ajs_1739 NC_008782.1 1803720 1804682 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(1803720..1804682) Acidovorax sp. JS42 4670859 YP_986005.1 CDS Ajs_1741 NC_008782.1 1806941 1807093 D KEGG: bxe:Bxe_A3305 hypothetical protein; hypothetical protein 1806941..1807093 Acidovorax sp. JS42 4670800 YP_986006.1 CDS Ajs_1742 NC_008782.1 1807100 1808614 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit complement(1807100..1808614) Acidovorax sp. JS42 4670785 YP_986007.1 CDS Ajs_1743 NC_008782.1 1808611 1809390 R PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase complement(1808611..1809390) Acidovorax sp. JS42 4670725 YP_986008.1 CDS Ajs_1744 NC_008782.1 1809389 1810168 D PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein; type 11 methyltransferase 1809389..1810168 Acidovorax sp. JS42 4670693 YP_986009.1 CDS rnhA NC_008782.1 1810205 1810651 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1810205..1810651 Acidovorax sp. JS42 4670657 YP_986010.1 CDS Ajs_1746 NC_008782.1 1810678 1811013 R PFAM: Thioredoxin domain; KEGG: pae:PA2694 probable thioredoxin; thioredoxin domain-containing protein complement(1810678..1811013) Acidovorax sp. JS42 4670636 YP_986011.1 CDS Ajs_1747 NC_008782.1 1811096 1812454 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rfr:Rfer_1466 MoeA-like, domain I and II; molybdopterin molybdochelatase complement(1811096..1812454) Acidovorax sp. JS42 4670706 YP_986012.1 CDS mobA NC_008782.1 1812481 1813116 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1812481..1813116) Acidovorax sp. JS42 4670871 YP_986013.1 CDS moaA NC_008782.1 1813177 1814313 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1813177..1814313) Acidovorax sp. JS42 4671065 YP_986014.1 CDS Ajs_1750 NC_008782.1 1814445 1815302 D KEGG: dar:Daro_3326 hypothetical protein; hypothetical protein 1814445..1815302 Acidovorax sp. JS42 4670561 YP_986015.1 CDS Ajs_1751 NC_008782.1 1815689 1816768 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(1815689..1816768) Acidovorax sp. JS42 4671086 YP_986016.1 CDS Ajs_1752 NC_008782.1 1816871 1817950 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(1816871..1817950) Acidovorax sp. JS42 4671105 YP_986017.1 CDS Ajs_1753 NC_008782.1 1818155 1819138 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(1818155..1819138) Acidovorax sp. JS42 4671341 YP_986018.1 CDS Ajs_1754 NC_008782.1 1819285 1820370 D KEGG: bxe:Bxe_A3516 putative transposase; putative transposase 1819285..1820370 Acidovorax sp. JS42 4671238 YP_986019.1 CDS Ajs_1755 NC_008782.1 1820420 1820980 R KEGG: pol:Bpro_2081 hypothetical protein; hypothetical protein complement(1820420..1820980) Acidovorax sp. JS42 4671486 YP_986020.1 CDS Ajs_1756 NC_008782.1 1821056 1822489 R PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase complement(1821056..1822489) Acidovorax sp. JS42 4671319 YP_986021.1 CDS hppA NC_008782.1 1822597 1824681 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(1822597..1824681) Acidovorax sp. JS42 4671199 YP_986022.1 CDS Ajs_1758 NC_008782.1 1824891 1825451 D PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase; inorganic diphosphatase 1824891..1825451 Acidovorax sp. JS42 4671290 YP_986023.1 CDS Ajs_1759 NC_008782.1 1825667 1826173 D PFAM: CheW domain protein; KEGG: rfr:Rfer_1476 CheW protein; putative CheW protein 1825667..1826173 Acidovorax sp. JS42 4671209 YP_986024.1 CDS Ajs_1760 NC_008782.1 1826242 1827462 R PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482; hypothetical protein complement(1826242..1827462) Acidovorax sp. JS42 4671201 YP_986025.1 CDS Ajs_1761 NC_008782.1 1827768 1829432 D KEGG: rfr:Rfer_1699 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; NAD+ synthetase 1827768..1829432 Acidovorax sp. JS42 4671632 YP_986026.1 CDS Ajs_1762 NC_008782.1 1829500 1829838 D PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_1700 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 1829500..1829838 Acidovorax sp. JS42 4671706 YP_986027.1 CDS Ajs_1763 NC_008782.1 1829889 1830482 R PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730; hypothetical protein complement(1829889..1830482) Acidovorax sp. JS42 4671785 YP_986028.1 CDS Ajs_1764 NC_008782.1 1830475 1830876 R PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase; diacylglycerol kinase complement(1830475..1830876) Acidovorax sp. JS42 4674244 YP_986029.1 CDS Ajs_1765 NC_008782.1 1830973 1831533 R PFAM: RDD domain containing protein; KEGG: rfr:Rfer_3318 RDD; RDD domain-containing protein complement(1830973..1831533) Acidovorax sp. JS42 4671886 YP_986030.1 CDS Ajs_1766 NC_008782.1 1831564 1832388 R KEGG: pol:Bpro_2314 putative transmembrane protein; hypothetical protein complement(1831564..1832388) Acidovorax sp. JS42 4671922 YP_986031.1 CDS Ajs_1767 NC_008782.1 1832402 1832863 R KEGG: pol:Bpro_2315 putative transmembrane protein; hypothetical protein complement(1832402..1832863) Acidovorax sp. JS42 4671862 YP_986032.1 CDS Ajs_1768 NC_008782.1 1832860 1833426 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(1832860..1833426) Acidovorax sp. JS42 4671848 YP_986033.1 CDS Ajs_1769 NC_008782.1 1833713 1835509 D acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate; acetolactate synthase 3 catalytic subunit 1833713..1835509 Acidovorax sp. JS42 4671858 YP_986034.1 CDS ilvH NC_008782.1 1835650 1836141 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1835650..1836141 Acidovorax sp. JS42 4671850 YP_986035.1 CDS Ajs_1771 NC_008782.1 1836199 1837215 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1836199..1837215 Acidovorax sp. JS42 4671488 YP_986036.1 CDS Ajs_1772 NC_008782.1 1837391 1838224 D KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1837391..1838224 Acidovorax sp. JS42 4671482 YP_986037.1 CDS Ajs_1773 NC_008782.1 1838447 1840120 D KEGG: pol:Bpro_2321 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 1838447..1840120 Acidovorax sp. JS42 4672200 YP_986038.1 CDS Ajs_1774 NC_008782.1 1840156 1841694 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1840156..1841694 Acidovorax sp. JS42 4672232 YP_986039.1 CDS Ajs_1775 NC_008782.1 1841809 1842891 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; murein-DD-endopeptidase 1841809..1842891 Acidovorax sp. JS42 4672263 YP_986040.1 CDS Ajs_1776 NC_008782.1 1842963 1843775 R PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1842963..1843775) Acidovorax sp. JS42 4672367 YP_986041.1 CDS Ajs_1777 NC_008782.1 1844011 1845285 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3328 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(1844011..1845285) Acidovorax sp. JS42 4672420 YP_986042.1 CDS Ajs_1778 NC_008782.1 1845317 1846402 R PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_3327 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(1845317..1846402) Acidovorax sp. JS42 4672045 YP_986043.1 CDS Ajs_1779 NC_008782.1 1846527 1847246 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(1846527..1847246) Acidovorax sp. JS42 4672460 YP_986044.1 CDS Ajs_1780 NC_008782.1 1847449 1848216 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2958 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1847449..1848216) Acidovorax sp. JS42 4673259 YP_986045.1 CDS Ajs_1781 NC_008782.1 1848239 1849759 R converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase complement(1848239..1849759) Acidovorax sp. JS42 4672654 YP_986046.1 CDS Ajs_1782 NC_008782.1 1849836 1851902 D KEGG: rfr:Rfer_3583 hypothetical protein; hypothetical protein 1849836..1851902 Acidovorax sp. JS42 4672594 YP_986047.1 CDS Ajs_1783 NC_008782.1 1851933 1852862 R KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(1851933..1852862) Acidovorax sp. JS42 4672601 YP_986048.1 CDS thiG NC_008782.1 1852865 1853677 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1852865..1853677) Acidovorax sp. JS42 4672566 YP_986049.1 CDS Ajs_1785 NC_008782.1 1853689 1853886 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(1853689..1853886) Acidovorax sp. JS42 4672540 YP_986050.1 CDS Ajs_1786 NC_008782.1 1853883 1855007 R PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_2464 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1853883..1855007) Acidovorax sp. JS42 4672518 YP_986051.1 CDS Ajs_1787 NC_008782.1 1855225 1856151 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mfa:Mfla_0997 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1855225..1856151 Acidovorax sp. JS42 4672826 YP_986052.1 CDS Ajs_1788 NC_008782.1 1856219 1856695 R PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: dps:DP2276 hypothetical protein; SH3 type 3 domain-containing protein complement(1856219..1856695) Acidovorax sp. JS42 4672888 YP_986053.1 CDS Ajs_1789 NC_008782.1 1856955 1858019 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_2452 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1856955..1858019) Acidovorax sp. JS42 4672906 YP_986054.1 CDS Ajs_1790 NC_008782.1 1858045 1858368 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(1858045..1858368) Acidovorax sp. JS42 4672957 YP_986055.1 CDS Ajs_1791 NC_008782.1 1858471 1859859 R KEGG: rfr:Rfer_2460 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; sulfate adenylyltransferase subunit 1 complement(1858471..1859859) Acidovorax sp. JS42 4673024 YP_986056.1 CDS Ajs_1792 NC_008782.1 1859859 1860791 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(1859859..1860791) Acidovorax sp. JS42 4673042 YP_986057.1 CDS Ajs_1793 NC_008782.1 1860853 1861494 R PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mfa:Mfla_1679 phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase complement(1860853..1861494) Acidovorax sp. JS42 4673058 YP_986058.1 CDS Ajs_1794 NC_008782.1 1861491 1861886 R PFAM: Uncharacterised conserved protein UCP030820; KEGG: rfr:Rfer_2457 uncharacterised conserved protein UCP030820; hypothetical protein complement(1861491..1861886) Acidovorax sp. JS42 4673072 YP_986059.1 CDS Ajs_1795 NC_008782.1 1861912 1863699 R PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite/sulfite reductase hemoprotein subunit beta complement(1861912..1863699) Acidovorax sp. JS42 4672741 YP_986060.1 CDS Ajs_1796 NC_008782.1 1863853 1865772 R PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752; hypothetical protein complement(1863853..1865772) Acidovorax sp. JS42 4673170 YP_986061.1 CDS Ajs_1797 NC_008782.1 1865808 1866473 R PFAM: protein of unknown function UPF0126; KEGG: dar:Daro_3213 hypothetical protein; hypothetical protein complement(1865808..1866473) Acidovorax sp. JS42 4673955 YP_986062.1 CDS Ajs_1798 NC_008782.1 1866882 1867154 R PFAM: Fe(II) trafficking protein YggX; KEGG: rfr:Rfer_2102 Fe(II) trafficking protein YggX; hypothetical protein complement(1866882..1867154) Acidovorax sp. JS42 4673902 YP_986063.1 CDS Ajs_1799 NC_008782.1 1867242 1868312 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 1867242..1868312 Acidovorax sp. JS42 4673197 YP_986064.1 CDS Ajs_1800 NC_008782.1 1868514 1869212 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_B0273 putative glutathione S-transferase; glutathione S-transferase domain-containing protein 1868514..1869212 Acidovorax sp. JS42 4673109 YP_986065.1 CDS Ajs_1801 NC_008782.1 1869256 1870722 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: cvi:CV3481 deoxyribodipyrimidine photo-lyase; deoxyribodipyrimidine photo-lyase type I 1869256..1870722 Acidovorax sp. JS42 4673125 YP_986066.1 CDS Ajs_1802 NC_008782.1 1871054 1872670 D PFAM: phage integrase family protein; KEGG: rru:Rru_A3316 phage integrase; phage integrase family protein 1871054..1872670 Acidovorax sp. JS42 4673483 YP_986067.1 CDS Ajs_1803 NC_008782.1 1873051 1873632 D PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: bte:BTH_I3231 transposon Tn2501 resolvase; resolvase domain-containing protein 1873051..1873632 Acidovorax sp. JS42 4673781 YP_986068.1 CDS Ajs_1804 NC_008782.1 1874137 1874916 D hypothetical protein 1874137..1874916 Acidovorax sp. JS42 4673823 YP_986069.1 CDS Ajs_1805 NC_008782.1 1875801 1876163 R hypothetical protein complement(1875801..1876163) Acidovorax sp. JS42 4673866 YP_986070.1 CDS Ajs_1806 NC_008782.1 1876844 1877104 D PFAM: helix-turn-helix domain protein; KEGG: spt:SPA4290 subunit S of type I restriction-modification system; XRE family transcriptional regulator 1876844..1877104 Acidovorax sp. JS42 4673937 YP_986071.1 CDS Ajs_1807 NC_008782.1 1877112 1877930 R hypothetical protein complement(1877112..1877930) Acidovorax sp. JS42 4673868 YP_986072.1 CDS Ajs_1809 NC_008782.1 1878688 1879488 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR; enoyl-[acyl-carrier-protein] reductase complement(1878688..1879488) Acidovorax sp. JS42 4674040 YP_986073.1 CDS Ajs_1810 NC_008782.1 1879578 1881452 D PFAM: extracellular solute-binding protein, family 5; KEGG: rfr:Rfer_2128 extracellular solute-binding protein, family 5; extracellular solute-binding protein 1879578..1881452 Acidovorax sp. JS42 4674691 YP_986074.1 CDS Ajs_1811 NC_008782.1 1881460 1882497 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2129 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1881460..1882497 Acidovorax sp. JS42 4674620 YP_986075.1 CDS Ajs_1812 NC_008782.1 1882501 1883598 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2130 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1882501..1883598 Acidovorax sp. JS42 4674116 YP_986076.1 CDS Ajs_1813 NC_008782.1 1883620 1885257 D PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related; ABC transporter-like protein 1883620..1885257 Acidovorax sp. JS42 4674482 YP_986077.1 CDS Ajs_1814 NC_008782.1 1885585 1886751 D KEGG: pol:Bpro_3517 putative lipoprotein; putative lipoprotein 1885585..1886751 Acidovorax sp. JS42 4674404 YP_986078.1 CDS Ajs_1815 NC_008782.1 1886829 1887656 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; hydroxypyruvate isomerase 1886829..1887656 Acidovorax sp. JS42 4674382 YP_986079.1 CDS Ajs_1816 NC_008782.1 1888042 1888908 R PFAM: UspA domain protein; KEGG: bbr:BB3577 hypothetical protein; UspA domain-containing protein complement(1888042..1888908) Acidovorax sp. JS42 4674316 YP_986080.1 CDS Ajs_1817 NC_008782.1 1889057 1889989 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpe:BP1820 probable LysR-family transcriptional regulator; LysR family transcriptional regulator complement(1889057..1889989) Acidovorax sp. JS42 4674163 YP_986081.1 CDS Ajs_1818 NC_008782.1 1890086 1891438 D PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein; hypothetical protein 1890086..1891438 Acidovorax sp. JS42 4674167 YP_986082.1 CDS Ajs_1819 NC_008782.1 1891448 1891810 D KEGG: bbr:BB3205 hypothetical protein; hypothetical protein 1891448..1891810 Acidovorax sp. JS42 4673705 YP_986083.1 CDS Ajs_1820 NC_008782.1 1891855 1892841 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5400 hypothetical protein; hypothetical protein 1891855..1892841 Acidovorax sp. JS42 4673600 YP_986084.1 CDS Ajs_1821 NC_008782.1 1892910 1894055 R PFAM: protein of unknown function UPF0118; KEGG: pae:PA2651 hypothetical protein; hypothetical protein complement(1892910..1894055) Acidovorax sp. JS42 4673279 YP_986085.1 CDS sucA NC_008782.1 1894185 1897061 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1894185..1897061 Acidovorax sp. JS42 4673264 YP_986086.1 CDS Ajs_1823 NC_008782.1 1897111 1898376 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pol:Bpro_2623 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; 2-oxoglutarate dehydrogenase E2 component 1897111..1898376 Acidovorax sp. JS42 4673187 YP_986087.1 CDS Ajs_1824 NC_008782.1 1898466 1899893 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1898466..1899893 Acidovorax sp. JS42 4672998 YP_986088.1 CDS Ajs_1825 NC_008782.1 1899971 1901074 D PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase; AFG1 family ATPase 1899971..1901074 Acidovorax sp. JS42 4672724 YP_986089.1 CDS Ajs_1826 NC_008782.1 1901074 1901760 D KEGG: pol:Bpro_2620 hypothetical protein; hypothetical protein 1901074..1901760 Acidovorax sp. JS42 4672677 YP_986090.1 CDS Ajs_1827 NC_008782.1 1901820 1902623 R PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein complement(1901820..1902623) Acidovorax sp. JS42 4672492 YP_986091.1 CDS Ajs_1828 NC_008782.1 1902794 1904860 D SMART: helicase c2; KEGG: rfr:Rfer_2316 helicase C2; helicase c2 1902794..1904860 Acidovorax sp. JS42 4672506 YP_986092.1 CDS Ajs_1829 NC_008782.1 1904823 1905725 R KEGG: pol:Bpro_2616 putative transmembrane protein; hypothetical protein complement(1904823..1905725) Acidovorax sp. JS42 4672544 YP_986093.1 CDS Ajs_1830 NC_008782.1 1905731 1909294 D KEGG: rfr:Rfer_2040 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1905731..1909294 Acidovorax sp. JS42 4672570 YP_986094.1 CDS clpS NC_008782.1 1909333 1909740 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 1909333..1909740 Acidovorax sp. JS42 4672584 YP_986095.1 CDS Ajs_1832 NC_008782.1 1909800 1912148 D KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit clpA 1909800..1912148 Acidovorax sp. JS42 4672612 YP_986096.1 CDS Ajs_1833 NC_008782.1 1912399 1913007 D PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family; TetR family transcriptional regulator 1912399..1913007 Acidovorax sp. JS42 4672636 YP_986097.1 CDS Ajs_1834 NC_008782.1 1913004 1914155 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein; RND family efflux transporter MFP subunit 1913004..1914155 Acidovorax sp. JS42 4672032 YP_986098.1 CDS Ajs_1835 NC_008782.1 1914152 1915351 D PFAM: protein of unknown function DUF214; KEGG: net:Neut_1935 protein of unknown function DUF214; hypothetical protein 1914152..1915351 Acidovorax sp. JS42 4672327 YP_986099.1 CDS Ajs_1836 NC_008782.1 1915362 1916072 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase; ABC transporter-like protein 1915362..1916072 Acidovorax sp. JS42 4672008 YP_986100.1 CDS Ajs_1837 NC_008782.1 1916165 1917589 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rfr:Rfer_0327 lytic murein transglycosylase; lytic murein transglycosylase complement(1916165..1917589) Acidovorax sp. JS42 4671977 YP_986101.1 CDS sbcB NC_008782.1 1917634 1919073 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1917634..1919073 Acidovorax sp. JS42 4672099 YP_986102.1 CDS Ajs_1839 NC_008782.1 1919082 1919966 D PFAM: Silent information regulator protein Sir2; KEGG: xcb:XC_0318 NAD-dependent deacetylase; silent information regulator protein Sir2 1919082..1919966 Acidovorax sp. JS42 4671872 YP_986103.1 CDS Ajs_1840 NC_008782.1 1920037 1922040 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reu:Reut_A1778 helix-turn-helix, fis-type; Fis family GAF modulated sigma54 specific transcriptional regulator 1920037..1922040 Acidovorax sp. JS42 4671957 YP_986104.1 CDS Ajs_1841 NC_008782.1 1922296 1922643 R KEGG: pol:Bpro_2487 hypothetical protein; hypothetical protein complement(1922296..1922643) Acidovorax sp. JS42 4671429 YP_986105.1 CDS Ajs_1842 NC_008782.1 1922640 1925678 R PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2486 transposase Tn3; transposase Tn3 family protein complement(1922640..1925678) Acidovorax sp. JS42 4671472 YP_986106.1 CDS Ajs_1844 NC_008782.1 1926335 1927159 R PFAM: Integrase, catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2); integrase catalytic subunit complement(1926335..1927159) Acidovorax sp. JS42 4670590 YP_986107.1 CDS Ajs_1845 NC_008782.1 1927207 1927485 R PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1); transposase IS3/IS911 family protein complement(1927207..1927485) Acidovorax sp. JS42 4671237 YP_986108.1 CDS Ajs_1846 NC_008782.1 1927593 1927952 D KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein 1927593..1927952 Acidovorax sp. JS42 4671276 YP_986109.1 CDS Ajs_1847 NC_008782.1 1928110 1929465 D PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 probable cobalt-zinc-cadmium outer membrane resistance protein; outer membrane efflux protein 1928110..1929465 Acidovorax sp. JS42 4671292 YP_986110.1 CDS Ajs_1848 NC_008782.1 1929468 1931084 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5981 membrane fusion protein cluster 2; RND family efflux transporter MFP subunit 1929468..1931084 Acidovorax sp. JS42 4671302 YP_986111.1 CDS Ajs_1849 NC_008782.1 1931100 1934288 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5980 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein 1931100..1934288 Acidovorax sp. JS42 4671335 YP_986112.1 CDS Ajs_1850 NC_008782.1 1934352 1934732 D KEGG: dar:Daro_2616 hypothetical protein; hypothetical protein 1934352..1934732 Acidovorax sp. JS42 4671363 YP_986113.1 CDS Ajs_1851 NC_008782.1 1935233 1935721 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: cvi:CV1153 probable transcriptional regulator, MerR family; MerR family transcriptional regulator complement(1935233..1935721) Acidovorax sp. JS42 4671545 YP_986114.1 CDS Ajs_1853 NC_008782.1 1936716 1939004 D PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 family protein 1936716..1939004 Acidovorax sp. JS42 4670984 YP_986115.1 CDS Ajs_1854 NC_008782.1 1939130 1939867 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(1939130..1939867) Acidovorax sp. JS42 4670589 YP_986116.1 CDS Ajs_1855 NC_008782.1 1939904 1941427 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit complement(1939904..1941427) Acidovorax sp. JS42 4670579 YP_986117.1 CDS Ajs_1857 NC_008782.1 1942832 1943149 R KEGG: eba:ebA2165 hypothetical protein; hypothetical protein complement(1942832..1943149) Acidovorax sp. JS42 4670646 YP_986118.1 CDS Ajs_1858 NC_008782.1 1943299 1944963 R PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ppu:PP_0024 membrane protein, putative; phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase complement(1943299..1944963) Acidovorax sp. JS42 4670767 YP_986119.1 CDS Ajs_1859 NC_008782.1 1945078 1945509 R PFAM: Prophage CP4-57 regulatory; KEGG: bxe:Bxe_A2662 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(1945078..1945509) Acidovorax sp. JS42 4670796 YP_986120.1 CDS Ajs_1860 NC_008782.1 1945732 1946943 D KEGG: pha:PSHAa0354 cell division transporter substrate-binding protein; hypothetical protein 1945732..1946943 Acidovorax sp. JS42 4670806 YP_986121.1 CDS Ajs_1861 NC_008782.1 1946960 1947619 D KEGG: ter:Tery_0707 stress protein; hypothetical protein 1946960..1947619 Acidovorax sp. JS42 4670821 YP_986122.1 CDS Ajs_1862 NC_008782.1 1947628 1948608 D hypothetical protein 1947628..1948608 Acidovorax sp. JS42 4670849 YP_986123.1 CDS Ajs_1863 NC_008782.1 1948687 1949772 D KEGG: bxe:Bxe_A3516 putative transposase; putative transposase 1948687..1949772 Acidovorax sp. JS42 4670908 YP_986124.1 CDS Ajs_1864 NC_008782.1 1949775 1950590 D KEGG: xom:XOO_2697 hypothetical protein; hypothetical protein 1949775..1950590 Acidovorax sp. JS42 4670939 YP_986125.1 CDS Ajs_1865 NC_008782.1 1950627 1951790 D PFAM: Patatin; KEGG: nha:Nham_3555 patatin; patatin 1950627..1951790 Acidovorax sp. JS42 4670985 YP_986126.1 CDS Ajs_1866 NC_008782.1 1951883 1952227 D KEGG: rpd:RPD_2132 hypothetical protein; putative sigma E regulatory protein, MucB/RseB 1951883..1952227 Acidovorax sp. JS42 4670991 YP_986127.1 CDS Ajs_1867 NC_008782.1 1952208 1953434 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(1952208..1953434) Acidovorax sp. JS42 4671010 YP_986128.1 CDS Ajs_1869 NC_008782.1 1955051 1955650 R KEGG: reu:Reut_A3332 hypothetical protein; membrane protein complement(1955051..1955650) Acidovorax sp. JS42 4671074 YP_986129.1 CDS Ajs_1871 NC_008782.1 1955963 1957051 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(1955963..1957051) Acidovorax sp. JS42 4671093 YP_986130.1 CDS Ajs_1872 NC_008782.1 1957134 1957610 R KEGG: sfr:Sfri_3475 hypothetical protein; hypothetical protein complement(1957134..1957610) Acidovorax sp. JS42 4671095 YP_986131.1 CDS Ajs_1873 NC_008782.1 1957630 1958301 R KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein complement(1957630..1958301) Acidovorax sp. JS42 4671140 YP_986132.1 CDS Ajs_1874 NC_008782.1 1958491 1959570 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 1958491..1959570 Acidovorax sp. JS42 4671141 YP_986133.1 CDS Ajs_1875 NC_008782.1 1959656 1960156 D KEGG: fal:FRAAL1708 hypothetical protein; hypothetical protein 1959656..1960156 Acidovorax sp. JS42 4671148 YP_986134.1 CDS Ajs_1876 NC_008782.1 1960193 1961035 D KEGG: bur:Bcep18194_A5506 hypothetical protein; hypothetical protein 1960193..1961035 Acidovorax sp. JS42 4670571 YP_986135.1 CDS Ajs_1877 NC_008782.1 1961442 1962671 D KEGG: pol:Bpro_2470 transposase Tn3; transposase Tn3 1961442..1962671 Acidovorax sp. JS42 4671152 YP_986136.1 CDS Ajs_1878 NC_008782.1 1962744 1965386 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sal:Sala_2582 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1962744..1965386) Acidovorax sp. JS42 4671159 YP_986137.1 CDS Ajs_1879 NC_008782.1 1965565 1966851 D PFAM: sodium/calcium exchanger membrane region; KEGG: dvu:DVU2617 sodium/calcium exchanger family protein; sodium/calcium exchanger membrane region 1965565..1966851 Acidovorax sp. JS42 4671161 YP_986138.1 CDS Ajs_1880 NC_008782.1 1967219 1967623 R KEGG: bbr:BB0177 hypothetical protein; hypothetical protein complement(1967219..1967623) Acidovorax sp. JS42 4671170 YP_986139.1 CDS Ajs_1882 NC_008782.1 1968234 1969934 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RS01673 putative integrase/recombinase protein; phage integrase family protein 1968234..1969934 Acidovorax sp. JS42 4671174 YP_986140.1 CDS Ajs_1883 NC_008782.1 1969947 1970276 R KEGG: pol:Bpro_2510 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1969947..1970276) Acidovorax sp. JS42 4671176 YP_986141.1 CDS Ajs_1884 NC_008782.1 1970273 1970656 R PFAM: protein of unknown function DUF891; KEGG: pol:Bpro_2509 protein of unknown function DUF891; hypothetical protein complement(1970273..1970656) Acidovorax sp. JS42 4671256 YP_986142.1 CDS Ajs_1886 NC_008782.1 1971445 1972698 R PFAM: phage integrase family protein; KEGG: reu:Reut_A1625 phage integrase:phage integrase, N-terminal SAM-like; phage integrase family protein complement(1971445..1972698) Acidovorax sp. JS42 4671457 YP_986143.1 CDS Ajs_1887 NC_008782.1 1972732 1973739 D KEGG: reu:Reut_A1626 hypothetical protein; hypothetical protein 1972732..1973739 Acidovorax sp. JS42 4671543 YP_986144.1 CDS Ajs_1888 NC_008782.1 1973823 1974203 R PFAM: protein of unknown function DUF779; KEGG: aeh:Mlg_2727 protein of unknown function DUF779; hypothetical protein complement(1973823..1974203) Acidovorax sp. JS42 4671563 YP_986145.1 CDS Ajs_1889 NC_008782.1 1974225 1975256 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmb:BruAb1_0198 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(1974225..1975256) Acidovorax sp. JS42 4671294 YP_986146.1 CDS Ajs_1890 NC_008782.1 1975352 1976875 R PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3678 aldehyde dehydrogenase (NAD+); aldehyde dehydrogenase complement(1975352..1976875) Acidovorax sp. JS42 4671303 YP_986147.1 CDS Ajs_1891 NC_008782.1 1977165 1978880 R PFAM: Na+/Pi-cotransporter; KEGG: hch:HCH_00018 Na+/phosphate symporter; Na+/Pi-cotransporter complement(1977165..1978880) Acidovorax sp. JS42 4671277 YP_986148.1 CDS Ajs_1892 NC_008782.1 1979182 1981656 D PFAM: protein of unknown function UPF0118; GAF domain protein; KEGG: nha:Nham_4144 putative GAF sensor protein; putative GAF sensor protein 1979182..1981656 Acidovorax sp. JS42 4671229 YP_986149.1 CDS upp NC_008782.1 1981740 1982369 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1981740..1982369) Acidovorax sp. JS42 4671420 YP_986150.1 CDS Ajs_1894 NC_008782.1 1982407 1983381 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_3215 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(1982407..1983381) Acidovorax sp. JS42 4671216 YP_986151.1 CDS Ajs_1895 NC_008782.1 1983579 1984838 R flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase complement(1983579..1984838) Acidovorax sp. JS42 4671604 YP_986152.1 CDS Ajs_1896 NC_008782.1 1984965 1986560 D Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcription regulator 1984965..1986560 Acidovorax sp. JS42 4671196 YP_986153.1 CDS Ajs_1897 NC_008782.1 1986789 1988300 R PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative; hypothetical protein complement(1986789..1988300) Acidovorax sp. JS42 4671649 YP_986154.1 CDS Ajs_1898 NC_008782.1 1988382 1989101 D PFAM: protein of unknown function DUF28; KEGG: rfr:Rfer_2075 protein of unknown function DUF28; hypothetical protein 1988382..1989101 Acidovorax sp. JS42 4671666 YP_986155.1 CDS Ajs_1899 NC_008782.1 1989123 1990409 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1989123..1990409 Acidovorax sp. JS42 4671695 YP_986156.1 CDS Ajs_1900 NC_008782.1 1990406 1991410 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 1990406..1991410 Acidovorax sp. JS42 4671825 YP_986157.1 CDS Ajs_1901 NC_008782.1 1991581 1992405 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein; iojap-like protein 1991581..1992405 Acidovorax sp. JS42 4671835 YP_986158.1 CDS Ajs_1902 NC_008782.1 1992421 1992888 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1992421..1992888 Acidovorax sp. JS42 4671911 YP_986159.1 CDS Ajs_1903 NC_008782.1 1992940 1993566 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_1974 maf protein; maf protein 1992940..1993566 Acidovorax sp. JS42 4671902 YP_986160.1 CDS Ajs_1904 NC_008782.1 1993594 1994358 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0060 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator complement(1993594..1994358) Acidovorax sp. JS42 4674076 YP_986161.1 CDS Ajs_1905 NC_008782.1 1994412 1996040 R PFAM: cytochrome d1, heme region; KEGG: dar:Daro_3260 cytochrome d1, heme region; cytochrome d1 heme subunit complement(1994412..1996040) Acidovorax sp. JS42 4672705 YP_986162.1 CDS Ajs_1906 NC_008782.1 1996105 1997325 R PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_0071 elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(1996105..1997325) Acidovorax sp. JS42 4672112 YP_986163.1 CDS Ajs_1907 NC_008782.1 1997328 1997810 R KEGG: dar:Daro_3267 regulatory proteins, AsnC/Lrp; AsnC family transcriptional regulator complement(1997328..1997810) Acidovorax sp. JS42 4671980 YP_986164.1 CDS Ajs_1908 NC_008782.1 1997800 1998282 R KEGG: eba:ebA880 NirG protein precursor; AsnC family transcriptional regulator complement(1997800..1998282) Acidovorax sp. JS42 4671935 YP_986165.1 CDS Ajs_1909 NC_008782.1 1998269 1999315 R KEGG: tbd:Tbd_0074 possible transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1998269..1999315) Acidovorax sp. JS42 4672149 YP_986166.1 CDS Ajs_1910 NC_008782.1 1999319 2000533 R PFAM: cytochrome d1, heme region; KEGG: eba:ebA883 NirF; cytochrome d1 heme subunit complement(1999319..2000533) Acidovorax sp. JS42 4672178 YP_986167.1 CDS Ajs_1911 NC_008782.1 2000530 2000874 R KEGG: dar:Daro_3271 hypothetical protein; hypothetical protein complement(2000530..2000874) Acidovorax sp. JS42 4672210 YP_986168.1 CDS Ajs_1912 NC_008782.1 2000894 2002618 R PFAM: cytochrome d1, heme region; KEGG: eba:ebA888 cytochrome cd1 nitrite reductase precursor; nitrite reductase complement(2000894..2002618) Acidovorax sp. JS42 4672231 YP_986169.1 CDS Ajs_1913 NC_008782.1 2002805 2003653 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: net:Neut_1002 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2002805..2003653 Acidovorax sp. JS42 4672239 YP_986170.1 CDS Ajs_1914 NC_008782.1 2003730 2005217 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rfr:Rfer_2082 ribonuclease, Rne/Rng family; ribonuclease G 2003730..2005217 Acidovorax sp. JS42 4672260 YP_986171.1 CDS Ajs_1915 NC_008782.1 2005623 2006774 R catalyzes the transfer of an amino moiety; putative aminotransferase complement(2005623..2006774) Acidovorax sp. JS42 4672353 YP_986172.1 CDS Ajs_1916 NC_008782.1 2006981 2008069 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 2006981..2008069 Acidovorax sp. JS42 4672392 YP_986173.1 CDS Ajs_1917 NC_008782.1 2008240 2009181 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_2112 transcriptional regulator, LysR family; transcriptional regulator CysB-like protein complement(2008240..2009181) Acidovorax sp. JS42 4672404 YP_986174.1 CDS Ajs_1918 NC_008782.1 2009256 2009639 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rfr:Rfer_2113 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(2009256..2009639) Acidovorax sp. JS42 4672407 YP_986175.1 CDS Ajs_1919 NC_008782.1 2009658 2010767 R PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ; permease complement(2009658..2010767) Acidovorax sp. JS42 4672409 YP_986176.1 CDS Ajs_1920 NC_008782.1 2010764 2011855 R PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ; permease complement(2010764..2011855) Acidovorax sp. JS42 4672416 YP_986177.1 CDS Ajs_1921 NC_008782.1 2011879 2013369 D PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase; PepA aminopeptidase 2011879..2013369 Acidovorax sp. JS42 4672422 YP_986178.1 CDS Ajs_1922 NC_008782.1 2013395 2013835 D PFAM: DNA polymerase III chi subunit, HolC; KEGG: rfr:Rfer_2117 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC 2013395..2013835 Acidovorax sp. JS42 4672427 YP_986179.1 CDS Ajs_1923 NC_008782.1 2013832 2014263 D KEGG: pol:Bpro_2410 hypothetical protein; hypothetical protein 2013832..2014263 Acidovorax sp. JS42 4672434 YP_986180.1 CDS Ajs_1924 NC_008782.1 2014342 2015421 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(2014342..2015421) Acidovorax sp. JS42 4672439 YP_986181.1 CDS Ajs_1925 NC_008782.1 2015585 2016718 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2015585..2016718 Acidovorax sp. JS42 4672446 YP_986182.1 CDS Ajs_1926 NC_008782.1 2016796 2017803 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2016796..2017803) Acidovorax sp. JS42 4672456 YP_986183.1 CDS Ajs_1927 NC_008782.1 2018021 2018578 D KEGG: pol:Bpro_3461 hypothetical protein; hypothetical protein 2018021..2018578 Acidovorax sp. JS42 4672459 YP_986184.1 CDS Ajs_1928 NC_008782.1 2018714 2019466 D KEGG: mxa:MXAN_6813 hypothetical protein; hypothetical protein 2018714..2019466 Acidovorax sp. JS42 4672465 YP_986185.1 CDS Ajs_1929 NC_008782.1 2019561 2020001 D PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA; UspA domain-containing protein 2019561..2020001 Acidovorax sp. JS42 4674529 YP_986186.1 CDS Ajs_1930 NC_008782.1 2020097 2021089 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065; hypothetical protein complement(2020097..2021089) Acidovorax sp. JS42 4672751 YP_986187.1 CDS Ajs_1931 NC_008782.1 2021239 2022423 R catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase complement(2021239..2022423) Acidovorax sp. JS42 4672562 YP_986188.1 CDS Ajs_1932 NC_008782.1 2022533 2023315 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB2294 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2022533..2023315) Acidovorax sp. JS42 4672927 YP_986189.1 CDS Ajs_1933 NC_008782.1 2023347 2024015 R PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase; ribosomal large subunit pseudouridine synthase A complement(2023347..2024015) Acidovorax sp. JS42 4672961 YP_986190.1 CDS Ajs_1934 NC_008782.1 2024071 2026233 R KEGG: rfr:Rfer_2766 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase NtrB complement(2024071..2026233) Acidovorax sp. JS42 4672969 YP_986191.1 CDS Ajs_1935 NC_008782.1 2026309 2026710 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2026309..2026710) Acidovorax sp. JS42 4672989 YP_986192.1 CDS Ajs_1936 NC_008782.1 2026781 2029675 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(2026781..2029675) Acidovorax sp. JS42 4672732 YP_986193.1 CDS Ajs_1937 NC_008782.1 2029744 2030118 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein; glycine cleavage system H protein complement(2029744..2030118) Acidovorax sp. JS42 4673053 YP_986194.1 CDS Ajs_1938 NC_008782.1 2030222 2031352 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein; glycine cleavage system T protein complement(2030222..2031352) Acidovorax sp. JS42 4673061 YP_986195.1 CDS Ajs_1939 NC_008782.1 2031630 2032907 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1869 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(2031630..2032907) Acidovorax sp. JS42 4673064 YP_986196.1 CDS Ajs_1940 NC_008782.1 2032990 2033484 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1870 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(2032990..2033484) Acidovorax sp. JS42 4673091 YP_986197.1 CDS Ajs_1941 NC_008782.1 2033562 2034533 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1871 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(2033562..2034533) Acidovorax sp. JS42 4673119 YP_986198.1 CDS Ajs_1942 NC_008782.1 2034818 2035285 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4248 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2034818..2035285 Acidovorax sp. JS42 4673323 YP_986199.1 CDS Ajs_1943 NC_008782.1 2035308 2036432 R PFAM: TonB-dependent receptor; KEGG: ngo:NGO2093 iron complex outermembrane recepter protein; TonB-dependent receptor complement(2035308..2036432) Acidovorax sp. JS42 4673247 YP_986200.1 CDS Ajs_1944 NC_008782.1 2036753 2037979 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 2036753..2037979 Acidovorax sp. JS42 4673880 YP_986201.1 CDS Ajs_1945 NC_008782.1 2038022 2038924 R PFAM: TonB-dependent receptor, plug; KEGG: pat:Patl_3414 TonB-dependent receptor; TonB-dependent receptor, plug complement(2038022..2038924) Acidovorax sp. JS42 4673916 YP_986202.1 CDS Ajs_1946 NC_008782.1 2039038 2040051 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bpa:BPP2496 putative transcriptional regulator; AraC family transcriptional regulator 2039038..2040051 Acidovorax sp. JS42 4673974 YP_986203.1 CDS Ajs_1947 NC_008782.1 2040142 2040936 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB3354 putative ABC-transporter ATP-binding component; ABC transporter-like protein complement(2040142..2040936) Acidovorax sp. JS42 4673892 YP_986204.1 CDS Ajs_1948 NC_008782.1 2040953 2041840 R PFAM: inner-membrane translocator; KEGG: pau:PA14_14380 putative transmembrane component of ABC transporte; inner-membrane translocator complement(2040953..2041840) Acidovorax sp. JS42 4673977 YP_986205.1 CDS Ajs_1949 NC_008782.1 2041946 2042914 R PFAM: protein of unknown function DUF534; KEGG: pae:PA3836 hypothetical protein; hypothetical protein complement(2041946..2042914) Acidovorax sp. JS42 4673847 YP_986206.1 CDS Ajs_1950 NC_008782.1 2043133 2044839 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rfr:Rfer_3018 electron-transferring-flavoprotein dehydrogenase; electron-transferring-flavoprotein dehydrogenase complement(2043133..2044839) Acidovorax sp. JS42 4673329 YP_986207.1 CDS Ajs_1951 NC_008782.1 2045403 2046929 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: eca:ECA3642 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2045403..2046929 Acidovorax sp. JS42 4673332 YP_986208.1 CDS Ajs_1952 NC_008782.1 2046999 2048354 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3086 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2046999..2048354) Acidovorax sp. JS42 4673335 YP_986209.1 CDS Ajs_1953 NC_008782.1 2048351 2049031 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_A0490 two component response regulator; two component transcriptional regulator complement(2048351..2049031) Acidovorax sp. JS42 4673338 YP_986210.1 CDS Ajs_1954 NC_008782.1 2049173 2049874 D KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like; PAP2 (acid phosphatase) superfamily protein-like protein 2049173..2049874 Acidovorax sp. JS42 4673342 YP_986211.1 CDS Ajs_1955 NC_008782.1 2049921 2051690 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase; sulfatase 2049921..2051690 Acidovorax sp. JS42 4673345 YP_986212.1 CDS Ajs_1956 NC_008782.1 2051754 2052335 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related; peroxidase-like protein complement(2051754..2052335) Acidovorax sp. JS42 4673128 YP_986213.1 CDS Ajs_1957 NC_008782.1 2052352 2053035 R PFAM: DTW domain containing protein; KEGG: tcx:Tcr_0863 DTW; DTW domain-containing protein complement(2052352..2053035) Acidovorax sp. JS42 4673150 YP_986214.1 CDS Ajs_1958 NC_008782.1 2053142 2054593 R PFAM: Catalase domain protein; KEGG: sco:SCO0379 catalase; catalase complement(2053142..2054593) Acidovorax sp. JS42 4673462 YP_986215.1 CDS Ajs_1959 NC_008782.1 2054769 2056049 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0958 putative NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2054769..2056049 Acidovorax sp. JS42 4673463 YP_986216.1 CDS Ajs_1960 NC_008782.1 2056169 2056714 R KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; LuxR family transcriptional regulator complement(2056169..2056714) Acidovorax sp. JS42 4673530 YP_986217.1 CDS Ajs_1961 NC_008782.1 2056797 2057504 D KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2056797..2057504 Acidovorax sp. JS42 4673572 YP_986218.1 CDS Ajs_1962 NC_008782.1 2057508 2058146 D KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 2057508..2058146 Acidovorax sp. JS42 4673605 YP_986219.1 CDS Ajs_1963 NC_008782.1 2058298 2059611 D PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_2755 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2058298..2059611 Acidovorax sp. JS42 4673608 YP_986220.1 CDS Ajs_1964 NC_008782.1 2059746 2060747 D KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 2059746..2060747 Acidovorax sp. JS42 4673626 YP_986221.1 CDS Ajs_1965 NC_008782.1 2060823 2061590 D KEGG: rfr:Rfer_1225 hypothetical protein; hypothetical protein 2060823..2061590 Acidovorax sp. JS42 4673666 YP_986222.1 CDS Ajs_1966 NC_008782.1 2061556 2062965 D KEGG: rfr:Rfer_1226 hypothetical protein; hypothetical protein 2061556..2062965 Acidovorax sp. JS42 4673728 YP_986223.1 CDS Ajs_1967 NC_008782.1 2062962 2066156 D KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 2062962..2066156 Acidovorax sp. JS42 4673751 YP_986224.1 CDS Ajs_1968 NC_008782.1 2066220 2067473 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA0938 hypothetical protein; Sel1 domain-containing protein complement(2066220..2067473) Acidovorax sp. JS42 4673755 YP_986225.1 CDS Ajs_1969 NC_008782.1 2067509 2069254 R KEGG: rru:Rru_A0873 hypothetical protein; hypothetical protein complement(2067509..2069254) Acidovorax sp. JS42 4673763 YP_986226.1 CDS Ajs_1970 NC_008782.1 2069349 2069768 R hypothetical protein complement(2069349..2069768) Acidovorax sp. JS42 4673762 YP_986227.1 CDS Ajs_1971 NC_008782.1 2069835 2070425 R hypothetical protein complement(2069835..2070425) Acidovorax sp. JS42 4673773 YP_986228.1 CDS Ajs_1976 NC_008782.1 2073679 2075007 R PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA562 transposase; transposase IS116/IS110/IS902 family protein complement(2073679..2075007) Acidovorax sp. JS42 4673313 YP_986229.1 CDS Ajs_1977 NC_008782.1 2075379 2077232 R PFAM: phage integrase family protein; KEGG: net:Neut_0006 phage integrase family protein; phage integrase family protein complement(2075379..2077232) Acidovorax sp. JS42 4673877 YP_986230.1 CDS Ajs_1978 NC_008782.1 2077713 2079203 R KEGG: rfr:Rfer_0598 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate semialdehyde dehydrogenase complement(2077713..2079203) Acidovorax sp. JS42 4674070 YP_986231.1 CDS alaS NC_008782.1 2079348 2081972 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2079348..2081972 Acidovorax sp. JS42 4674560 YP_986232.1 CDS Ajs_1980 NC_008782.1 2082120 2083124 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1673 diguanylate cyclase; diguanylate cyclase complement(2082120..2083124) Acidovorax sp. JS42 4674545 YP_986233.1 CDS trmB NC_008782.1 2083145 2083900 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(2083145..2083900) Acidovorax sp. JS42 4674401 YP_986234.1 CDS Ajs_1982 NC_008782.1 2083897 2084868 R PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rfr:Rfer_1905 glutamate--tRNA ligase; glutamate--tRNA ligase complement(2083897..2084868) Acidovorax sp. JS42 4674399 YP_986235.1 CDS Ajs_1983 NC_008782.1 2084865 2085968 R PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_1906 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2084865..2085968) Acidovorax sp. JS42 4674328 YP_986236.1 CDS Ajs_1984 NC_008782.1 2086065 2087003 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1907 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2086065..2087003) Acidovorax sp. JS42 4674258 YP_986237.1 CDS Ajs_1985 NC_008782.1 2087121 2087822 D PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2575 pirin-like; pirin domain-containing protein 2087121..2087822 Acidovorax sp. JS42 4674285 YP_986238.1 CDS Ajs_1986 NC_008782.1 2087859 2088272 D PFAM: DoxX family protein; KEGG: rfr:Rfer_2574 DoxX; DoxX family protein 2087859..2088272 Acidovorax sp. JS42 4674220 YP_986239.1 CDS Ajs_1987 NC_008782.1 2088344 2089084 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(2088344..2089084) Acidovorax sp. JS42 4674189 YP_986240.1 CDS aat NC_008782.1 2089081 2089845 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2089081..2089845) Acidovorax sp. JS42 4674129 YP_986241.1 CDS Ajs_1989 NC_008782.1 2089884 2090315 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll1814 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(2089884..2090315) Acidovorax sp. JS42 4673308 YP_986242.1 CDS Ajs_1990 NC_008782.1 2090402 2091739 R PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase; glucarate dehydratase complement(2090402..2091739) Acidovorax sp. JS42 4673726 YP_986243.1 CDS Ajs_1991 NC_008782.1 2091783 2092769 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2091783..2092769) Acidovorax sp. JS42 4673305 YP_986244.1 CDS Ajs_1992 NC_008782.1 2092837 2093790 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4644 hypothetical protein; hypothetical protein complement(2092837..2093790) Acidovorax sp. JS42 4673304 YP_986245.1 CDS Ajs_1993 NC_008782.1 2093860 2094771 R catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase complement(2093860..2094771) Acidovorax sp. JS42 4673688 YP_986246.1 CDS Ajs_1994 NC_008782.1 2094864 2095832 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065; hypothetical protein complement(2094864..2095832) Acidovorax sp. JS42 4673684 YP_986247.1 CDS Ajs_1995 NC_008782.1 2095943 2096749 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfo:Pfl_0823 regulatory protein GntR, HTH; GntR family transcriptional regulator complement(2095943..2096749) Acidovorax sp. JS42 4673293 YP_986248.1 CDS Ajs_1996 NC_008782.1 2096846 2098153 D PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pfo:Pfl_3283 mandelate racemase/muconate lactonizing enzyme; mandelate racemase/muconate lactonizing protein 2096846..2098153 Acidovorax sp. JS42 4673583 YP_986249.1 CDS Ajs_1997 NC_008782.1 2098185 2099189 D PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_1635 uncharacterized protein UPF0065; hypothetical protein 2098185..2099189 Acidovorax sp. JS42 4673581 YP_986250.1 CDS Ajs_1998 NC_008782.1 2099332 2100894 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase; galactarate dehydratase 2099332..2100894 Acidovorax sp. JS42 4673280 YP_986251.1 CDS Ajs_1999 NC_008782.1 2100944 2102002 D PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RS05371 putative gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase) protein; gluconolactonase 2100944..2102002 Acidovorax sp. JS42 4673521 YP_986252.1 CDS Ajs_2000 NC_008782.1 2102288 2102626 R PFAM: protein of unknown function DUF469; KEGG: psb:Psyr_2112 protein with unknown function DUF469; hypothetical protein complement(2102288..2102626) Acidovorax sp. JS42 4673498 YP_986253.1 CDS Ajs_2001 NC_008782.1 2102694 2103875 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2102694..2103875) Acidovorax sp. JS42 4673496 YP_986254.1 CDS Ajs_2002 NC_008782.1 2104126 2104512 D hypothetical protein 2104126..2104512 Acidovorax sp. JS42 4673481 YP_986255.1 CDS Ajs_2003 NC_008782.1 2104939 2106291 R KEGG: vpa:VP1564 hypothetical protein; hypothetical protein complement(2104939..2106291) Acidovorax sp. JS42 4673405 YP_986256.1 CDS Ajs_2004 NC_008782.1 2106468 2107448 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(2106468..2107448) Acidovorax sp. JS42 4673395 YP_986257.1 CDS Ajs_2005 NC_008782.1 2108119 2109006 R KEGG: pol:Bpro_2471 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(2108119..2109006) Acidovorax sp. JS42 4673233 YP_986258.1 CDS Ajs_2006 NC_008782.1 2109099 2109503 R KEGG: mlo:mlr7906 hypothetical protein; hypothetical protein complement(2109099..2109503) Acidovorax sp. JS42 4673236 YP_986259.1 CDS Ajs_2007 NC_008782.1 2109573 2110739 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB2630 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2109573..2110739) Acidovorax sp. JS42 4673178 YP_986260.1 CDS Ajs_2008 NC_008782.1 2110767 2111195 R PFAM: protein of unknown function DUF1311; KEGG: stm:STM1123 putative periplasmic protein; hypothetical protein complement(2110767..2111195) Acidovorax sp. JS42 4673199 YP_986261.1 CDS Ajs_2009 NC_008782.1 2111234 2112757 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: xac:XAC1312 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(2111234..2112757) Acidovorax sp. JS42 4673203 YP_986262.1 CDS Ajs_2010 NC_008782.1 2112914 2113825 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB3734 probable LysR-family transcriptional regulator; LysR family transcriptional regulator 2112914..2113825 Acidovorax sp. JS42 4673220 YP_986263.1 CDS Ajs_2011 NC_008782.1 2113895 2114287 R KEGG: tbd:Tbd_0731 hypothetical protein; hypothetical protein complement(2113895..2114287) Acidovorax sp. JS42 4673330 YP_986264.1 CDS Ajs_2012 NC_008782.1 2114302 2114775 D PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains; CBS domain-containing protein 2114302..2114775 Acidovorax sp. JS42 4673015 YP_986265.1 CDS Ajs_2013 NC_008782.1 2114832 2114990 R KEGG: pol:Bpro_2400 hypothetical protein; hypothetical protein complement(2114832..2114990) Acidovorax sp. JS42 4672968 YP_986266.1 CDS Ajs_2014 NC_008782.1 2115344 2116534 D PFAM: glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 2115344..2116534 Acidovorax sp. JS42 4672720 YP_986267.1 CDS Ajs_2015 NC_008782.1 2116689 2117303 D PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2323 isochorismatase hydrolase; isochorismatase hydrolase 2116689..2117303 Acidovorax sp. JS42 4672900 YP_986268.1 CDS prpE NC_008782.1 2117524 2119419 D catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase 2117524..2119419 Acidovorax sp. JS42 4672703 YP_986269.1 CDS Ajs_2017 NC_008782.1 2119508 2123407 R KEGG: ppu:PP_1983 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2119508..2123407) Acidovorax sp. JS42 4672854 YP_986270.1 CDS Ajs_2018 NC_008782.1 2123626 2124564 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3002 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2123626..2124564) Acidovorax sp. JS42 4672810 YP_986271.1 CDS Ajs_2019 NC_008782.1 2124561 2125109 R KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2124561..2125109) Acidovorax sp. JS42 4672653 YP_986272.1 CDS Ajs_2020 NC_008782.1 2125170 2126723 R PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family; DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada complement(2125170..2126723) Acidovorax sp. JS42 4672546 YP_986273.1 CDS Ajs_2021 NC_008782.1 2126920 2128308 D PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rfr:Rfer_2999 phosphomannomutase; phosphomannomutase 2126920..2128308 Acidovorax sp. JS42 4672495 YP_986274.1 CDS Ajs_2022 NC_008782.1 2128329 2129690 D PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like; 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 2128329..2129690 Acidovorax sp. JS42 4672787 YP_986275.1 CDS Ajs_2023 NC_008782.1 2129795 2132521 D PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2129795..2132521 Acidovorax sp. JS42 4672783 YP_986276.1 CDS Ajs_2024 NC_008782.1 2132528 2132881 D KEGG: eba:ebB231 hypothetical protein; hypothetical protein 2132528..2132881 Acidovorax sp. JS42 4672550 YP_986277.1 CDS Ajs_2025 NC_008782.1 2132926 2133507 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa6270 hypothetical protein; deaminase-reductase domain-containing protein 2132926..2133507 Acidovorax sp. JS42 4672595 YP_986278.1 CDS Ajs_2026 NC_008782.1 2133591 2134808 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein complement(2133591..2134808) Acidovorax sp. JS42 4672607 YP_986279.1 CDS Ajs_2027 NC_008782.1 2134994 2135332 R SMART: Rhodanese domain protein; KEGG: rfr:Rfer_2603 rhodanese-like; rhodanese domain-containing protein complement(2134994..2135332) Acidovorax sp. JS42 4672626 YP_986280.1 CDS Ajs_2028 NC_008782.1 2135364 2136074 R PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase; type 11 methyltransferase complement(2135364..2136074) Acidovorax sp. JS42 4672629 YP_986281.1 CDS Ajs_2029 NC_008782.1 2136122 2136784 R PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2136122..2136784) Acidovorax sp. JS42 4672631 YP_986282.1 CDS Ajs_2030 NC_008782.1 2136915 2137460 D KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2136915..2137460 Acidovorax sp. JS42 4672769 YP_986283.1 CDS Ajs_2031 NC_008782.1 2137613 2137852 D KEGG: pol:Bpro_1680 hypothetical protein; hypothetical protein 2137613..2137852 Acidovorax sp. JS42 4672768 YP_986284.1 CDS Ajs_2032 NC_008782.1 2137878 2138282 D hypothetical protein 2137878..2138282 Acidovorax sp. JS42 4672714 YP_986285.1 CDS Ajs_2033 NC_008782.1 2138459 2140546 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0186 putative outer membrane protein; TonB-dependent receptor 2138459..2140546 Acidovorax sp. JS42 4672758 YP_986286.1 CDS Ajs_2034 NC_008782.1 2140960 2141832 D KEGG: eba:ebA6713 hypothetical protein; hypothetical protein 2140960..2141832 Acidovorax sp. JS42 4672656 YP_986287.1 CDS Ajs_2035 NC_008782.1 2141969 2143192 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pau:PA14_55740 putative chromate transport protein; chromate transporter 2141969..2143192 Acidovorax sp. JS42 4672750 YP_986288.1 CDS Ajs_2036 NC_008782.1 2143257 2143709 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_2154 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2143257..2143709) Acidovorax sp. JS42 4672374 YP_986289.1 CDS Ajs_2037 NC_008782.1 2143847 2145016 D PFAM: Saccharopine dehydrogenase; KEGG: bpe:BP3682 putative dehydrogenase; saccharopine dehydrogenase 2143847..2145016 Acidovorax sp. JS42 4672358 YP_986290.1 CDS Ajs_2038 NC_008782.1 2145017 2146846 R PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase complement(2145017..2146846) Acidovorax sp. JS42 4672208 YP_986291.1 CDS Ajs_2039 NC_008782.1 2147015 2147650 R PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2147015..2147650) Acidovorax sp. JS42 4671966 YP_986292.1 CDS Ajs_2040 NC_008782.1 2147775 2149937 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2147775..2149937 Acidovorax sp. JS42 4672172 YP_986293.1 CDS Ajs_2041 NC_008782.1 2149997 2150962 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2149997..2150962 Acidovorax sp. JS42 4671971 YP_986294.1 CDS Ajs_2042 NC_008782.1 2150988 2152520 D PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase; carboxyl transferase 2150988..2152520 Acidovorax sp. JS42 4672150 YP_986295.1 CDS Ajs_2043 NC_008782.1 2152542 2154590 D PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding; carbamoyl-phosphate synthase L chain, ATP-binding 2152542..2154590 Acidovorax sp. JS42 4672120 YP_986296.1 CDS Ajs_2044 NC_008782.1 2154650 2155111 D KEGG: pol:Bpro_2168 lactoylglutathione lyase; lactoylglutathione lyase 2154650..2155111 Acidovorax sp. JS42 4672103 YP_986297.1 CDS Ajs_2045 NC_008782.1 2155477 2156529 D KEGG: rfr:Rfer_2292 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2155477..2156529 Acidovorax sp. JS42 4671926 YP_986298.1 CDS Ajs_2046 NC_008782.1 2156795 2157586 D PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2156795..2157586 Acidovorax sp. JS42 4671948 YP_986299.1 CDS Ajs_2047 NC_008782.1 2157649 2158065 D KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2157649..2158065 Acidovorax sp. JS42 4671956 YP_986300.1 CDS Ajs_2048 NC_008782.1 2158135 2158782 R KEGG: rfr:Rfer_2061 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-keto-3-deoxy-phosphogluconate aldolase complement(2158135..2158782) Acidovorax sp. JS42 4671734 YP_986301.1 CDS Ajs_2049 NC_008782.1 2158773 2160590 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(2158773..2160590) Acidovorax sp. JS42 4671462 YP_986302.1 CDS Ajs_2050 NC_008782.1 2160751 2161761 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP complement(2160751..2161761) Acidovorax sp. JS42 4671436 YP_986303.1 CDS Ajs_2051 NC_008782.1 2161806 2163086 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3662 TRAP-T family transporter, large (12TMs) inner membrane subunit; TRAP dicarboxylate transporter subunit DctM complement(2161806..2163086) Acidovorax sp. JS42 4671674 YP_986304.1 CDS Ajs_2052 NC_008782.1 2163095 2163616 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(2163095..2163616) Acidovorax sp. JS42 4671454 YP_986305.1 CDS Ajs_2053 NC_008782.1 2163613 2164161 R TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pen:PSEEN2421 gluconokinase; carbohydrate kinase complement(2163613..2164161) Acidovorax sp. JS42 4671660 YP_986306.1 CDS Ajs_2054 NC_008782.1 2164377 2165402 D PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family; LacI family transcription regulator 2164377..2165402 Acidovorax sp. JS42 4671453 YP_986307.1 CDS Ajs_2055 NC_008782.1 2165586 2166125 R PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB; OmpA/MotB domain-containing protein complement(2165586..2166125) Acidovorax sp. JS42 4671647 YP_986308.1 CDS Ajs_2056 NC_008782.1 2166188 2166781 D PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein; ChaC family protein 2166188..2166781 Acidovorax sp. JS42 4671473 YP_986309.1 CDS Ajs_2057 NC_008782.1 2166815 2167342 D PFAM: superoxide dismutase, copper/zinc binding; KEGG: pol:Bpro_3554 superoxide dismutase; superoxide dismutase, copper/zinc-binding 2166815..2167342 Acidovorax sp. JS42 4671633 YP_986310.1 CDS Ajs_2058 NC_008782.1 2167381 2168034 D KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase 2167381..2168034 Acidovorax sp. JS42 4671440 YP_986311.1 CDS Ajs_2059 NC_008782.1 2168079 2169107 R PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2056 auxin efflux carrier; auxin efflux carrier complement(2168079..2169107) Acidovorax sp. JS42 4671612 YP_986312.1 CDS Ajs_2060 NC_008782.1 2169267 2170322 D TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family; tRNA-dihydrouridine synthase A 2169267..2170322 Acidovorax sp. JS42 4671421 YP_986313.1 CDS Ajs_2061 NC_008782.1 2170312 2173014 R KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase complement(2170312..2173014) Acidovorax sp. JS42 4671595 YP_986314.1 CDS Ajs_2062 NC_008782.1 2173184 2174254 D PFAM: RelA/SpoT domain protein; KEGG: sth:STH1636 putative GTP pyrophosphokinase; RelA/SpoT domain-containing protein 2173184..2174254 Acidovorax sp. JS42 4671396 YP_986315.1 CDS Ajs_2063 NC_008782.1 2174424 2175731 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular; polyhydroxyalkanoate depolymerase 2174424..2175731 Acidovorax sp. JS42 4671274 YP_986316.1 CDS Ajs_2064 NC_008782.1 2175740 2176393 D TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B 2175740..2176393 Acidovorax sp. JS42 4671318 YP_986317.1 CDS Ajs_2065 NC_008782.1 2176476 2178140 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2342 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2176476..2178140) Acidovorax sp. JS42 4671566 YP_986318.1 CDS Ajs_2066 NC_008782.1 2178160 2179374 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2178160..2179374 Acidovorax sp. JS42 4671342 YP_986319.1 CDS dapD NC_008782.1 2179371 2180195 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2179371..2180195 Acidovorax sp. JS42 4671359 YP_986320.1 CDS Ajs_2068 NC_008782.1 2180252 2181415 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein; twitching motility protein 2180252..2181415 Acidovorax sp. JS42 4671373 YP_986321.1 CDS Ajs_2069 NC_008782.1 2181459 2182634 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2181459..2182634 Acidovorax sp. JS42 4671389 YP_986322.1 CDS Ajs_2070 NC_008782.1 2182631 2183560 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2182631..2183560 Acidovorax sp. JS42 4670945 YP_986323.1 CDS Ajs_2071 NC_008782.1 2183607 2185577 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related; ABC transporter-like protein 2183607..2185577 Acidovorax sp. JS42 4670930 YP_986324.1 CDS fabG NC_008782.1 2186026 2186763 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(2186026..2186763) Acidovorax sp. JS42 4670913 YP_986325.1 CDS Ajs_2073 NC_008782.1 2187009 2188187 R KEGG: pol:Bpro_2140 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(2187009..2188187) Acidovorax sp. JS42 4670883 YP_986326.1 CDS Ajs_2074 NC_008782.1 2188329 2190128 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I; poly(R)-hydroxyalkanoic acid synthase, class I complement(2188329..2190128) Acidovorax sp. JS42 4670876 YP_986327.1 CDS Ajs_2075 NC_008782.1 2190201 2190491 D KEGG: rfr:Rfer_2563 hypothetical protein; hypothetical protein 2190201..2190491 Acidovorax sp. JS42 4670836 YP_986328.1 CDS Ajs_2076 NC_008782.1 2190408 2191235 R PFAM: protein of unknown function DUF152; KEGG: rfr:Rfer_2564 protein of unknown function DUF152; hypothetical protein complement(2190408..2191235) Acidovorax sp. JS42 4670831 YP_986329.1 CDS Ajs_2077 NC_008782.1 2191265 2191933 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase; maleylacetoacetate isomerase complement(2191265..2191933) Acidovorax sp. JS42 4670782 YP_986330.1 CDS Ajs_2078 NC_008782.1 2192052 2192747 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rfr:Rfer_2567 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 2192052..2192747 Acidovorax sp. JS42 4670772 YP_986331.1 CDS Ajs_2079 NC_008782.1 2192819 2193367 D PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase; NUDIX hydrolase 2192819..2193367 Acidovorax sp. JS42 4670624 YP_986332.1 CDS Ajs_2080 NC_008782.1 2193360 2194562 R PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1445 probable transmembrane protein; major facilitator superfamily transporter complement(2193360..2194562) Acidovorax sp. JS42 4671181 YP_986333.1 CDS Ajs_2081 NC_008782.1 2194578 2197118 R PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: rme:Rmet_4835 glycosyl transferase, family 51; glycosyl transferase family protein complement(2194578..2197118) Acidovorax sp. JS42 4670949 YP_986334.1 CDS Ajs_2082 NC_008782.1 2197365 2198315 R PFAM: Patatin; KEGG: nmu:Nmul_A0164 patatin; patatin complement(2197365..2198315) Acidovorax sp. JS42 4671100 YP_986335.1 CDS Ajs_2083 NC_008782.1 2198316 2200511 R KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like; DNA ligase complement(2198316..2200511) Acidovorax sp. JS42 4671145 YP_986336.1 CDS Ajs_2084 NC_008782.1 2200523 2200897 R KEGG: neu:NE2258 hypothetical protein; hypothetical protein complement(2200523..2200897) Acidovorax sp. JS42 4671333 YP_986337.1 CDS Ajs_2085 NC_008782.1 2200906 2202048 R SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rfr:Rfer_2200 hypothetical protein; ZipA protein complement(2200906..2202048) Acidovorax sp. JS42 4671393 YP_986338.1 CDS Ajs_2086 NC_008782.1 2202062 2205586 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: rfr:Rfer_2199 chromosome segregation protein SMC; chromosome segregation protein SMC complement(2202062..2205586) Acidovorax sp. JS42 4671847 YP_986339.1 CDS Ajs_2087 NC_008782.1 2205761 2206093 R PFAM: protein of unknown function UPF0060; KEGG: rme:Rmet_4032 protein of unknown function UPF0060; hypothetical protein complement(2205761..2206093) Acidovorax sp. JS42 4671588 YP_986340.1 CDS Ajs_2088 NC_008782.1 2206129 2209272 R KEGG: rfr:Rfer_3250 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase complement(2206129..2209272) Acidovorax sp. JS42 4671659 YP_986341.1 CDS Ajs_2089 NC_008782.1 2209472 2211313 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C7674 ABC efflux pump, ATPase subunit; ABC transporter-like protein 2209472..2211313 Acidovorax sp. JS42 4671817 YP_986342.1 CDS Ajs_2090 NC_008782.1 2211434 2212870 R PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05323 probable transporter transmembrane protein; major facilitator superfamily transporter complement(2211434..2212870) Acidovorax sp. JS42 4671944 YP_986343.1 CDS Ajs_2091 NC_008782.1 2213174 2213752 D PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60; NLP/P60 protein 2213174..2213752 Acidovorax sp. JS42 4671859 YP_986344.1 CDS Ajs_2092 NC_008782.1 2213887 2214366 D PFAM: protein of unknown function DUF55; KEGG: bte:BTH_I0831 family of unknown function (DUF589) superfamily; hypothetical protein 2213887..2214366 Acidovorax sp. JS42 4672289 YP_986345.1 CDS Ajs_2093 NC_008782.1 2214559 2215446 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: reu:Reut_C5900 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding:3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(2214559..2215446) Acidovorax sp. JS42 4672444 YP_986346.1 CDS Ajs_2094 NC_008782.1 2215510 2216469 R PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_1486 conserved hypothetical protein 95; hypothetical protein complement(2215510..2216469) Acidovorax sp. JS42 4672575 YP_986347.1 CDS Ajs_2095 NC_008782.1 2216595 2216909 D KEGG: eba:ebB41 hypothetical protein; hypothetical protein 2216595..2216909 Acidovorax sp. JS42 4673174 YP_986348.1 CDS Ajs_2096 NC_008782.1 2217044 2218894 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2217044..2218894) Acidovorax sp. JS42 4672517 YP_986349.1 CDS Ajs_2098 NC_008782.1 2219061 2220113 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA3655 probable alcohol dehydrogenase; alcohol dehydrogenase complement(2219061..2220113) Acidovorax sp. JS42 4672953 YP_986350.1 CDS Ajs_2099 NC_008782.1 2220252 2221142 R KEGG: reu:Reut_A1460 conserved hypothetical protein; putative signal peptide; putative signal peptide complement(2220252..2221142) Acidovorax sp. JS42 4673160 YP_986351.1 CDS Ajs_2100 NC_008782.1 2221236 2221988 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_5564 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2221236..2221988) Acidovorax sp. JS42 4673942 YP_986352.1 CDS Ajs_2101 NC_008782.1 2222166 2223407 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2222166..2223407 Acidovorax sp. JS42 4673947 YP_986353.1 CDS Ajs_2102 NC_008782.1 2223366 2224919 R KEGG: pol:Bpro_5565 flavin-containing monooxygenase FMO; cyclohexanone monooxygenase complement(2223366..2224919) Acidovorax sp. JS42 4673451 YP_986354.1 CDS Ajs_2105 NC_008782.1 2226597 2227235 R KEGG: bmb:BruAb2_0725 hypothetical protein; hypothetical protein complement(2226597..2227235) Acidovorax sp. JS42 4673965 YP_986355.1 CDS Ajs_2106 NC_008782.1 2227363 2227854 D PFAM: MgtC/SapB transporter; KEGG: bbr:BB4258 putative Mg(2+) transporter; MgtC/SapB transporter 2227363..2227854 Acidovorax sp. JS42 4670577 YP_986356.1 CDS Ajs_2108 NC_008782.1 2228517 2230064 R PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase complement(2228517..2230064) Acidovorax sp. JS42 4673709 YP_986357.1 CDS Ajs_2110 NC_008782.1 2230325 2231194 R PFAM: O-methyltransferase domain protein; KEGG: mlo:mll3178 hypothetical protein; O-methyltransferase domain-containing protein complement(2230325..2231194) Acidovorax sp. JS42 4673468 YP_986358.1 CDS Ajs_2112 NC_008782.1 2231742 2232179 R KEGG: pau:PA14_04100 hypothetical protein; hypothetical protein complement(2231742..2232179) Acidovorax sp. JS42 4673373 YP_986359.1 CDS Ajs_2113 NC_008782.1 2232370 2233242 D PFAM: extracellular solute-binding protein, family 3; KEGG: pau:PA14_04090 putative binding protein component of ABC transporter; extracellular solute-binding protein 2232370..2233242 Acidovorax sp. JS42 4673002 YP_986360.1 CDS Ajs_2114 NC_008782.1 2233314 2234006 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_04080 putative permease of ABC transporter; polar amino acid ABC transporter inner membrane subunit 2233314..2234006 Acidovorax sp. JS42 4672965 YP_986361.1 CDS Ajs_2115 NC_008782.1 2234009 2234503 R PFAM: protein of unknown function DUF523; KEGG: pau:PA14_04070 hypothetical protein; hypothetical protein complement(2234009..2234503) Acidovorax sp. JS42 4672700 YP_986362.1 CDS Ajs_2116 NC_008782.1 2234769 2235323 D KEGG: pau:PA14_04060 hypothetical protein; hypothetical protein 2234769..2235323 Acidovorax sp. JS42 4672824 YP_986363.1 CDS Ajs_2117 NC_008782.1 2235345 2235725 R KEGG: pau:PA14_04050 putative proline hydroxylase; proline hydroxylase-like protein complement(2235345..2235725) Acidovorax sp. JS42 4672589 YP_986364.1 CDS Ajs_2119 NC_008782.1 2237225 2238427 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2040 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2237225..2238427) Acidovorax sp. JS42 4672242 YP_986365.1 CDS Ajs_2120 NC_008782.1 2238621 2239160 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN2041 transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2238621..2239160 Acidovorax sp. JS42 4671939 YP_986366.1 CDS Ajs_2121 NC_008782.1 2239352 2240944 R PFAM: putative transposase; KEGG: sfx:S2705 putative transposase; putative transposase complement(2239352..2240944) Acidovorax sp. JS42 4671781 YP_986367.1 CDS Ajs_2122 NC_008782.1 2240957 2242045 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(2240957..2242045) Acidovorax sp. JS42 4671719 YP_986368.1 CDS Ajs_2123 NC_008782.1 2242333 2244216 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2242333..2244216) Acidovorax sp. JS42 4671634 YP_986369.1 CDS Ajs_2124 NC_008782.1 2244233 2245936 R KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(2244233..2245936) Acidovorax sp. JS42 4671343 YP_986370.1 CDS aceE NC_008782.1 2245956 2248652 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(2245956..2248652) Acidovorax sp. JS42 4670861 YP_986371.1 CDS Ajs_2126 NC_008782.1 2248822 2251368 D KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2248822..2251368 Acidovorax sp. JS42 4670523 YP_986372.1 CDS Ajs_2127 NC_008782.1 2251365 2251991 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 2251365..2251991 Acidovorax sp. JS42 4670762 YP_986373.1 CDS Ajs_2128 NC_008782.1 2252070 2252918 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2252070..2252918 Acidovorax sp. JS42 4670690 YP_986374.1 CDS Ajs_2129 NC_008782.1 2253006 2255039 D PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A; oligopeptidase A 2253006..2255039 Acidovorax sp. JS42 4674720 YP_986375.1 CDS Ajs_2130 NC_008782.1 2255154 2255810 D PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin; glutaredoxin 2255154..2255810 Acidovorax sp. JS42 4674472 YP_986376.1 CDS Ajs_2131 NC_008782.1 2255861 2256550 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(2255861..2256550) Acidovorax sp. JS42 4674722 YP_986377.1 CDS Ajs_2132 NC_008782.1 2256586 2257641 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2256586..2257641 Acidovorax sp. JS42 4670618 YP_986378.1 CDS Ajs_2133 NC_008782.1 2257699 2258022 R hypothetical protein complement(2257699..2258022) Acidovorax sp. JS42 4670503 YP_986379.1 CDS Ajs_2134 NC_008782.1 2258019 2258414 R KEGG: nmu:Nmul_A0655 hypothetical protein; hypothetical protein complement(2258019..2258414) Acidovorax sp. JS42 4670674 YP_986380.1 CDS Ajs_2135 NC_008782.1 2258482 2258862 R PFAM: protein of unknown function DUF883, ElaB; KEGG: cvi:CV3467 transmembrane protein; hypothetical protein complement(2258482..2258862) Acidovorax sp. JS42 4670689 YP_986381.1 CDS Ajs_2136 NC_008782.1 2258921 2260036 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2706 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2258921..2260036) Acidovorax sp. JS42 4670732 YP_986382.1 CDS Ajs_2137 NC_008782.1 2260054 2261130 R PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_2707 histone deacetylase superfamily; histone deacetylase superfamily protein complement(2260054..2261130) Acidovorax sp. JS42 4670771 YP_986383.1 CDS Ajs_2138 NC_008782.1 2261438 2262151 R KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2261438..2262151) Acidovorax sp. JS42 4670943 YP_986384.1 CDS Ajs_2139 NC_008782.1 2262151 2262489 R TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type; 2Fe-2S type ferredoxin, ISC system complement(2262151..2262489) Acidovorax sp. JS42 4671024 YP_986385.1 CDS hscA NC_008782.1 2262523 2264391 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(2262523..2264391) Acidovorax sp. JS42 4671526 YP_986386.1 CDS Ajs_2141 NC_008782.1 2264458 2264976 R TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: rfr:Rfer_2180 co-chaperone Hsc20; co-chaperone Hsc20 complement(2264458..2264976) Acidovorax sp. JS42 4671542 YP_986387.1 CDS Ajs_2142 NC_008782.1 2265045 2265368 R TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA complement(2265045..2265368) Acidovorax sp. JS42 4671548 YP_986388.1 CDS Ajs_2143 NC_008782.1 2265374 2265775 R TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold IscU complement(2265374..2265775) Acidovorax sp. JS42 4671600 YP_986389.1 CDS Ajs_2144 NC_008782.1 2265813 2267033 R TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_2177 cysteine desulfurase IscS; cysteine desulfurase IscS complement(2265813..2267033) Acidovorax sp. JS42 4671438 YP_986390.1 CDS Ajs_2145 NC_008782.1 2267138 2267674 R TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(2267138..2267674) Acidovorax sp. JS42 4671461 YP_986391.1 CDS Ajs_2147 NC_008782.1 2268368 2269594 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 2268368..2269594 Acidovorax sp. JS42 4671689 YP_986392.1 CDS Ajs_2148 NC_008782.1 2269703 2270929 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(2269703..2270929) Acidovorax sp. JS42 4671708 YP_986393.1 CDS Ajs_2149 NC_008782.1 2270922 2272013 R KEGG: bxe:Bxe_A3516 putative transposase; putative transposase complement(2270922..2272013) Acidovorax sp. JS42 4671714 YP_986394.1 CDS Ajs_2150 NC_008782.1 2272136 2274232 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2272136..2274232) Acidovorax sp. JS42 4671767 YP_986395.1 CDS Ajs_2151 NC_008782.1 2274341 2275537 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2274341..2275537 Acidovorax sp. JS42 4672087 YP_986396.1 CDS Ajs_2152 NC_008782.1 2275691 2277460 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3609 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2275691..2277460 Acidovorax sp. JS42 4672116 YP_986397.1 CDS Ajs_2153 NC_008782.1 2277463 2278341 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_1333 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2277463..2278341 Acidovorax sp. JS42 4672175 YP_986398.1 CDS Ajs_2154 NC_008782.1 2278349 2278843 D PFAM: protein of unknown function DUF1294; KEGG: shm:Shewmr7_2883 protein of unknown function DUF1294; hypothetical protein 2278349..2278843 Acidovorax sp. JS42 4672007 YP_986399.1 CDS Ajs_2156 NC_008782.1 2281797 2283050 D PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type; transposase, mutator type 2281797..2283050 Acidovorax sp. JS42 4672306 YP_986400.1 CDS Ajs_2157 NC_008782.1 2283178 2284206 D PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6282 integrase, catalytic region; integrase catalytic subunit 2283178..2284206 Acidovorax sp. JS42 4672323 YP_986401.1 CDS Ajs_2158 NC_008782.1 2284331 2284963 D KEGG: aeh:Mlg_1386 hypothetical protein; hypothetical protein 2284331..2284963 Acidovorax sp. JS42 4672340 YP_986402.1 CDS Ajs_2159 NC_008782.1 2285016 2285273 D KEGG: aeh:Mlg_1384 hypothetical protein; hypothetical protein 2285016..2285273 Acidovorax sp. JS42 4672377 YP_986403.1 CDS Ajs_2160 NC_008782.1 2285407 2286117 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY0852 hypothetical protein; type 11 methyltransferase 2285407..2286117 Acidovorax sp. JS42 4672756 YP_986404.1 CDS Ajs_2161 NC_008782.1 2286208 2287785 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 2286208..2287785 Acidovorax sp. JS42 4672781 YP_986405.1 CDS Ajs_2162 NC_008782.1 2287782 2290205 D PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase; trehalose 6-phosphate phosphorylase 2287782..2290205 Acidovorax sp. JS42 4672833 YP_986406.1 CDS Ajs_2163 NC_008782.1 2290268 2291281 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2290268..2291281 Acidovorax sp. JS42 4672665 YP_986407.1 CDS Ajs_2164 NC_008782.1 2291290 2293728 D TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: noc:Noc_1446 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase 2291290..2293728 Acidovorax sp. JS42 4672889 YP_986408.1 CDS Ajs_2165 NC_008782.1 2293773 2294813 D catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; glyceraldehyde-3-phosphate dehydrogenase 2293773..2294813 Acidovorax sp. JS42 4672916 YP_986409.1 CDS Ajs_2168 NC_008782.1 2296121 2296687 D PFAM: regulatory protein, TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family; TetR family transcriptional regulator 2296121..2296687 Acidovorax sp. JS42 4672986 YP_986410.1 CDS Ajs_2169 NC_008782.1 2296764 2297501 R PFAM: LysR, substrate-binding; KEGG: eba:ebA2490 transcriptional regulator; LysR family transcriptional regulator complement(2296764..2297501) Acidovorax sp. JS42 4673028 YP_986411.1 CDS Ajs_2170 NC_008782.1 2297676 2298293 D KEGG: mag:amb3764 hypothetical protein; hypothetical protein 2297676..2298293 Acidovorax sp. JS42 4673256 YP_986412.1 CDS Ajs_2171 NC_008782.1 2298290 2299960 D PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit 2298290..2299960 Acidovorax sp. JS42 4673350 YP_986413.1 CDS Ajs_2172 NC_008782.1 2299957 2300853 D PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein 2299957..2300853 Acidovorax sp. JS42 4673217 YP_986414.1 CDS Ajs_2173 NC_008782.1 2300850 2302343 D KEGG: mes:Meso_4392 hypothetical protein; hypothetical protein 2300850..2302343 Acidovorax sp. JS42 4673427 YP_986415.1 CDS Ajs_2174 NC_008782.1 2302481 2302780 D PFAM: helix-turn-helix domain protein; KEGG: eba:ebA2491 hypothetical protein; XRE family transcriptional regulator 2302481..2302780 Acidovorax sp. JS42 4673454 YP_986416.1 CDS Ajs_2175 NC_008782.1 2302807 2304651 R PFAM: protein of unknown function DUF1528; Relaxase; KEGG: eba:ebA2492 hypothetical protein; relaxase complement(2302807..2304651) Acidovorax sp. JS42 4673514 YP_986417.1 CDS Ajs_2176 NC_008782.1 2304854 2305774 R KEGG: xcb:XC_1037 hypothetical protein; hypothetical protein complement(2304854..2305774) Acidovorax sp. JS42 4673540 YP_986418.1 CDS Ajs_2177 NC_008782.1 2305767 2306594 R KEGG: xcb:XC_1038 hypothetical protein; hypothetical protein complement(2305767..2306594) Acidovorax sp. JS42 4673564 YP_986419.1 CDS Ajs_2178 NC_008782.1 2306755 2307123 D KEGG: net:Neut_0072 conserved hypothetical protein; hypothetical protein 2306755..2307123 Acidovorax sp. JS42 4673577 YP_986420.1 CDS Ajs_2179 NC_008782.1 2307140 2308663 R KEGG: eba:ebA2395 hypothetical protein; hypothetical protein complement(2307140..2308663) Acidovorax sp. JS42 4673630 YP_986421.1 CDS Ajs_2180 NC_008782.1 2308679 2309032 R KEGG: eba:ebB79 hypothetical protein; hypothetical protein complement(2308679..2309032) Acidovorax sp. JS42 4673704 YP_986422.1 CDS Ajs_2181 NC_008782.1 2309029 2310435 R KEGG: eba:ebA2510 hypothetical protein; hypothetical protein complement(2309029..2310435) Acidovorax sp. JS42 4673309 YP_986423.1 CDS Ajs_2182 NC_008782.1 2310446 2311390 R PFAM: protein of unknown function DUF1527; KEGG: eba:ebA2511 hypothetical protein; hypothetical protein complement(2310446..2311390) Acidovorax sp. JS42 4674166 YP_986424.1 CDS Ajs_2183 NC_008782.1 2311387 2311836 R PFAM: protein of unknown function DUF1525; KEGG: eba:ebB80 hypothetical protein; hypothetical protein complement(2311387..2311836) Acidovorax sp. JS42 4674182 YP_986425.1 CDS Ajs_2184 NC_008782.1 2312005 2312499 R PFAM: DNA repair protein RadC; KEGG: eba:ebA2514 DNA repair protein similar to radC-family; DNA repair protein RadC complement(2312005..2312499) Acidovorax sp. JS42 4674178 YP_986426.1 CDS Ajs_2185 NC_008782.1 2312695 2313438 R KEGG: eba:ebA2405 hypothetical protein; hypothetical protein complement(2312695..2313438) Acidovorax sp. JS42 4674180 YP_986427.1 CDS Ajs_2186 NC_008782.1 2313452 2316340 R KEGG: eba:ebA2406 hypothetical protein; hypothetical protein complement(2313452..2316340) Acidovorax sp. JS42 4674219 YP_986428.1 CDS Ajs_2187 NC_008782.1 2316340 2316774 R KEGG: eba:ebA2407 hypothetical protein; hypothetical protein complement(2316340..2316774) Acidovorax sp. JS42 4674238 YP_986429.1 CDS Ajs_2188 NC_008782.1 2316755 2318188 R KEGG: eba:ebA2408 hypothetical protein; hypothetical protein complement(2316755..2318188) Acidovorax sp. JS42 4674243 YP_986430.1 CDS Ajs_2189 NC_008782.1 2318178 2319092 R KEGG: eba:ebA2409 hypothetical protein; hypothetical protein complement(2318178..2319092) Acidovorax sp. JS42 4674157 YP_986431.1 CDS Ajs_2190 NC_008782.1 2319089 2319781 R KEGG: eba:ebA2410 hypothetical protein; hypothetical protein complement(2319089..2319781) Acidovorax sp. JS42 4674269 YP_986432.1 CDS Ajs_2191 NC_008782.1 2319778 2320188 R KEGG: eba:ebB69 hypothetical protein; hypothetical protein complement(2319778..2320188) Acidovorax sp. JS42 4674292 YP_986433.1 CDS Ajs_2192 NC_008782.1 2320201 2320569 R KEGG: eba:ebB70 hypothetical protein; hypothetical protein complement(2320201..2320569) Acidovorax sp. JS42 4674314 YP_986434.1 CDS Ajs_2193 NC_008782.1 2320592 2320831 R KEGG: xcv:XCV2374 hypothetical protein; hypothetical protein complement(2320592..2320831) Acidovorax sp. JS42 4674333 YP_986435.1 CDS Ajs_2194 NC_008782.1 2320828 2321187 R KEGG: eba:ebA2412 hypothetical protein; hypothetical protein complement(2320828..2321187) Acidovorax sp. JS42 4674351 YP_986436.1 CDS Ajs_2195 NC_008782.1 2321480 2321692 D TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sde:Sde_2760 putative transcriptional regulator; phage transcriptional regulator AlpA 2321480..2321692 Acidovorax sp. JS42 4674372 YP_986437.1 CDS Ajs_2196 NC_008782.1 2321702 2322802 D KEGG: ter:Tery_4678 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 2321702..2322802 Acidovorax sp. JS42 4674383 YP_986438.1 CDS Ajs_2197 NC_008782.1 2322823 2323281 D KEGG: rha:RHA1_ro04148 probable very short patch repair protein; putative very short patch repair protein 2322823..2323281 Acidovorax sp. JS42 4674394 YP_986439.1 CDS Ajs_2198 NC_008782.1 2323302 2326442 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein; helicase domain-containing protein 2323302..2326442 Acidovorax sp. JS42 4674412 YP_986440.1 CDS Ajs_2199 NC_008782.1 2326439 2328979 D KEGG: bps:BPSL0764 hypothetical protein; hypothetical protein 2326439..2328979 Acidovorax sp. JS42 4674425 YP_986441.1 CDS Ajs_2200 NC_008782.1 2328992 2330218 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(2328992..2330218) Acidovorax sp. JS42 4674448 YP_986442.1 CDS Ajs_2201 NC_008782.1 2330411 2331949 D KEGG: ava:Ava_C0223 hypothetical protein; hypothetical protein 2330411..2331949 Acidovorax sp. JS42 4674480 YP_986443.1 CDS Ajs_2202 NC_008782.1 2331946 2333901 D KEGG: nma:NMA0428 hypothetical protein; DNA mismatch repair ATPase-like protein 2331946..2333901 Acidovorax sp. JS42 4674509 YP_986444.1 CDS Ajs_2203 NC_008782.1 2333914 2337933 D PFAM: helicase domain protein; KEGG: bps:BPSL0765 putative helicase family protein; helicase domain-containing protein 2333914..2337933 Acidovorax sp. JS42 4674521 YP_986445.1 CDS Ajs_2204 NC_008782.1 2337936 2339795 D KEGG: bps:BPSL0766 hypothetical protein; hypothetical protein 2337936..2339795 Acidovorax sp. JS42 4674565 YP_986446.1 CDS Ajs_2205 NC_008782.1 2339797 2340558 D PFAM: phospholipase D/Transphosphatidylase; KEGG: bps:BPSL0767 putative phospholipase protein; phospholipase D/transphosphatidylase 2339797..2340558 Acidovorax sp. JS42 4674601 YP_986447.1 CDS Ajs_2206 NC_008782.1 2340610 2341302 R KEGG: ade:Adeh_3541 hypothetical protein; hypothetical protein complement(2340610..2341302) Acidovorax sp. JS42 4674628 YP_986448.1 CDS Ajs_2207 NC_008782.1 2341585 2342334 R KEGG: eba:ebA2420 hypothetical protein; hypothetical protein complement(2341585..2342334) Acidovorax sp. JS42 4674669 YP_986449.1 CDS Ajs_2208 NC_008782.1 2342331 2344487 R KEGG: eba:ebA2421 hypothetical protein; hypothetical protein complement(2342331..2344487) Acidovorax sp. JS42 4674693 YP_986450.1 CDS Ajs_2209 NC_008782.1 2344496 2345029 R KEGG: eba:ebA2423 hypothetical protein; hypothetical protein complement(2344496..2345029) Acidovorax sp. JS42 4673325 YP_986451.1 CDS Ajs_2210 NC_008782.1 2345026 2345646 R PFAM: Lytic transglycosylase, catalytic; KEGG: eba:ebA2424 hypothetical protein; lytic transglycosylase catalytic subunit complement(2345026..2345646) Acidovorax sp. JS42 4674061 YP_986452.1 CDS Ajs_2211 NC_008782.1 2345631 2346350 R KEGG: xcv:XCV2380 putative secreted protein; hypothetical protein complement(2345631..2346350) Acidovorax sp. JS42 4674075 YP_986453.1 CDS Ajs_2212 NC_008782.1 2346437 2347084 R KEGG: eba:ebA2426 hypothetical protein; hypothetical protein complement(2346437..2347084) Acidovorax sp. JS42 4674092 YP_986454.1 CDS Ajs_2213 NC_008782.1 2347081 2347692 R KEGG: bxe:Bxe_A1200 hypothetical protein; hypothetical protein complement(2347081..2347692) Acidovorax sp. JS42 4674128 YP_986455.1 CDS Ajs_2214 NC_008782.1 2348050 2348361 D KEGG: nmu:Nmul_B2805 transcriptional regulator, XRE family; hypothetical protein 2348050..2348361 Acidovorax sp. JS42 4674118 YP_986456.1 CDS Ajs_2215 NC_008782.1 2348354 2349265 D KEGG: vvy:VV2237 hypothetical protein; hypothetical protein 2348354..2349265 Acidovorax sp. JS42 4674103 YP_986457.1 CDS Ajs_2216 NC_008782.1 2349262 2349507 D KEGG: tfu:Tfu_0717 hypothetical protein; hypothetical protein 2349262..2349507 Acidovorax sp. JS42 4674004 YP_986458.1 CDS Ajs_2217 NC_008782.1 2349504 2351267 D KEGG: bms:BRA0377 hypothetical protein; hypothetical protein 2349504..2351267 Acidovorax sp. JS42 4673826 YP_986459.1 CDS Ajs_2218 NC_008782.1 2351304 2353832 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dsy:DSY2854 hypothetical protein; hypothetical protein 2351304..2353832 Acidovorax sp. JS42 4673756 YP_986460.1 CDS Ajs_2219 NC_008782.1 2354027 2355448 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: ppu:PP_3868 group II intron-encoding maturase; RNA-directed DNA polymerase complement(2354027..2355448) Acidovorax sp. JS42 4673742 YP_986461.1 CDS Ajs_2220 NC_008782.1 2355919 2358189 R PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: eba:ebA2431 conserved plasmid related protein; helicase domain-containing protein complement(2355919..2358189) Acidovorax sp. JS42 4673677 YP_986462.1 CDS Ajs_2221 NC_008782.1 2358301 2358606 R KEGG: eba:ebB75 hypothetical protein; hypothetical protein complement(2358301..2358606) Acidovorax sp. JS42 4673490 YP_986463.1 CDS Ajs_2222 NC_008782.1 2358708 2359817 R KEGG: eba:ebA2433 conserved hypothetical plasmid protein; hypothetical protein complement(2358708..2359817) Acidovorax sp. JS42 4673440 YP_986464.1 CDS Ajs_2223 NC_008782.1 2359883 2360533 R KEGG: bxe:Bxe_A1204 hypothetical protein; hypothetical protein complement(2359883..2360533) Acidovorax sp. JS42 4674550 YP_986465.1 CDS Ajs_2224 NC_008782.1 2360619 2360984 R KEGG: rme:Rmet_2324 hypothetical protein; hypothetical protein complement(2360619..2360984) Acidovorax sp. JS42 4674575 YP_986466.1 CDS Ajs_2225 NC_008782.1 2361074 2361685 R KEGG: eba:ebA2436 hypothetical protein; hypothetical protein complement(2361074..2361685) Acidovorax sp. JS42 4674695 YP_986467.1 CDS Ajs_2226 NC_008782.1 2361741 2362292 R KEGG: eba:ebA2440 hypothetical protein; hypothetical protein complement(2361741..2362292) Acidovorax sp. JS42 4673137 YP_986468.1 CDS Ajs_2227 NC_008782.1 2362637 2363002 R KEGG: eba:ebB76 hypothetical protein; hypothetical protein complement(2362637..2363002) Acidovorax sp. JS42 4673166 YP_986469.1 CDS Ajs_2228 NC_008782.1 2363068 2363865 R KEGG: eba:ebA2454 hypothetical protein; hypothetical protein complement(2363068..2363865) Acidovorax sp. JS42 4672633 YP_986470.1 CDS Ajs_2229 NC_008782.1 2364156 2364872 R KEGG: net:Neut_0113 conserved hypothetical protein; hypothetical protein complement(2364156..2364872) Acidovorax sp. JS42 4674488 YP_986471.1 CDS Ajs_2230 NC_008782.1 2365123 2365515 R KEGG: eba:ebA2455 hypothetical protein; hypothetical protein complement(2365123..2365515) Acidovorax sp. JS42 4674507 YP_986472.1 CDS Ajs_2231 NC_008782.1 2365541 2365777 R KEGG: bxe:Bxe_A1220 hypothetical protein; hypothetical protein complement(2365541..2365777) Acidovorax sp. JS42 4672571 YP_986473.1 CDS Ajs_2233 NC_008782.1 2366559 2368574 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(2366559..2368574) Acidovorax sp. JS42 4672413 YP_986474.1 CDS Ajs_2234 NC_008782.1 2368869 2369252 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(2368869..2369252) Acidovorax sp. JS42 4672228 YP_986475.1 CDS Ajs_2235 NC_008782.1 2369249 2369800 R KEGG: eba:ebA2461 hypothetical protein; hypothetical protein complement(2369249..2369800) Acidovorax sp. JS42 4671963 YP_986476.1 CDS Ajs_2236 NC_008782.1 2369797 2370576 R KEGG: eba:ebA2462 hypothetical protein; hypothetical protein complement(2369797..2370576) Acidovorax sp. JS42 4674222 YP_986477.1 CDS Ajs_2237 NC_008782.1 2370700 2370891 R KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain; hypothetical protein complement(2370700..2370891) Acidovorax sp. JS42 4671836 YP_986478.1 CDS Ajs_2238 NC_008782.1 2370920 2371207 R TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: plu:plu2210 hypothetical protein; addiction module antitoxin complement(2370920..2371207) Acidovorax sp. JS42 4671829 YP_986479.1 CDS Ajs_2239 NC_008782.1 2371194 2371493 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: aba:Acid345_2090 RelB antitoxin; addiction module antitoxin complement(2371194..2371493) Acidovorax sp. JS42 4671802 YP_986480.1 CDS Ajs_2241 NC_008782.1 2372700 2375615 R PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3; transposase Tn3 family protein complement(2372700..2375615) Acidovorax sp. JS42 4671602 YP_986481.1 CDS Ajs_2242 NC_008782.1 2375932 2376354 D KEGG: pol:Bpro_2151 hypothetical protein; hypothetical protein 2375932..2376354 Acidovorax sp. JS42 4671476 YP_986482.1 CDS Ajs_2243 NC_008782.1 2376372 2378915 R PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein complement(2376372..2378915) Acidovorax sp. JS42 4674161 YP_986483.1 CDS Ajs_2244 NC_008782.1 2378955 2379623 D PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein; hypothetical protein 2378955..2379623 Acidovorax sp. JS42 4674224 YP_986484.1 CDS Ajs_2245 NC_008782.1 2379733 2381145 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2379733..2381145 Acidovorax sp. JS42 4671225 YP_986485.1 CDS Ajs_2246 NC_008782.1 2381302 2381505 D hypothetical protein 2381302..2381505 Acidovorax sp. JS42 4671103 YP_986486.1 CDS Ajs_2247 NC_008782.1 2381564 2382691 R PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1468 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2381564..2382691) Acidovorax sp. JS42 4671041 YP_986487.1 CDS Ajs_2248 NC_008782.1 2382713 2384263 R PFAM: Amidase; KEGG: pol:Bpro_3826 amidase; amidase complement(2382713..2384263) Acidovorax sp. JS42 4670974 YP_986488.1 CDS Ajs_2249 NC_008782.1 2384307 2385284 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065; hypothetical protein complement(2384307..2385284) Acidovorax sp. JS42 4670941 YP_986489.1 CDS Ajs_2250 NC_008782.1 2385355 2386710 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(2385355..2386710) Acidovorax sp. JS42 4670779 YP_986490.1 CDS Ajs_2251 NC_008782.1 2386808 2387761 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 2386808..2387761 Acidovorax sp. JS42 4674130 YP_986491.1 CDS Ajs_2252 NC_008782.1 2387813 2388115 D PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_4900 transcriptional regulator, XRE family; XRE family transcriptional regulator 2387813..2388115 Acidovorax sp. JS42 4670617 YP_986492.1 CDS Ajs_2253 NC_008782.1 2388140 2389453 D PFAM: HipA domain protein; KEGG: rme:Rmet_4901 HipA-like protein; HipA domain-containing protein 2388140..2389453 Acidovorax sp. JS42 4670650 YP_986493.1 CDS Ajs_2254 NC_008782.1 2389686 2390585 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ava:Ava_4466 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2389686..2390585) Acidovorax sp. JS42 4670682 YP_986494.1 CDS Ajs_2255 NC_008782.1 2390681 2391748 D PFAM: protein of unknown function DUF897; KEGG: chu:CHU_2730 permease; hypothetical protein 2390681..2391748 Acidovorax sp. JS42 4670742 YP_986495.1 CDS Ajs_2256 NC_008782.1 2391869 2392432 R PFAM: Ankyrin; KEGG: bxe:Bxe_B1343 ankyrin domain protein; ankyrin complement(2391869..2392432) Acidovorax sp. JS42 4670824 YP_986496.1 CDS Ajs_2257 NC_008782.1 2392503 2392835 R PFAM: small multidrug resistance protein; KEGG: mfa:Mfla_1027 small multidrug resistance protein; small multidrug resistance protein complement(2392503..2392835) Acidovorax sp. JS42 4670850 YP_986497.1 CDS Ajs_2258 NC_008782.1 2392941 2393786 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A0050 5-carboxymethyl-2-hydroxymuconate delta-isomerase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2392941..2393786) Acidovorax sp. JS42 4670880 YP_986498.1 CDS Ajs_2259 NC_008782.1 2393938 2394546 D PFAM: Chromate transporter; KEGG: rfr:Rfer_2756 chromate transporter; chromate transporter 2393938..2394546 Acidovorax sp. JS42 4670898 YP_986499.1 CDS Ajs_2260 NC_008782.1 2394554 2395156 D PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter; chromate transporter 2394554..2395156 Acidovorax sp. JS42 4670948 YP_986500.1 CDS Ajs_2261 NC_008782.1 2395164 2395835 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: rso:RSp1191 probable 3,4-dihydroxy-2-butanone 4-phosphate synthase protein; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2395164..2395835) Acidovorax sp. JS42 4670979 YP_986501.1 CDS Ajs_2262 NC_008782.1 2396157 2396939 R PFAM: Silent information regulator protein Sir2; KEGG: reu:Reut_A2070 silent information regulator protein Sir2; silent information regulator protein Sir2 complement(2396157..2396939) Acidovorax sp. JS42 4671070 YP_986502.1 CDS Ajs_2263 NC_008782.1 2396936 2397604 R PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4769 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2396936..2397604) Acidovorax sp. JS42 4670567 YP_986503.1 CDS Ajs_2264 NC_008782.1 2397693 2398046 D PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein; hypothetical protein 2397693..2398046 Acidovorax sp. JS42 4671149 YP_986504.1 CDS Ajs_2265 NC_008782.1 2398104 2398556 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nha:Nham_3665 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2398104..2398556 Acidovorax sp. JS42 4671247 YP_986505.1 CDS Ajs_2266 NC_008782.1 2398556 2399026 D PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr2292 hypothetical protein; activator of Hsp90 ATPase 1 family protein 2398556..2399026 Acidovorax sp. JS42 4671323 YP_986506.1 CDS Ajs_2267 NC_008782.1 2399093 2399545 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gme:Gmet_2483 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2399093..2399545 Acidovorax sp. JS42 4671235 YP_986507.1 CDS Ajs_2268 NC_008782.1 2399566 2400312 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3; RNA methyltransferase complement(2399566..2400312) Acidovorax sp. JS42 4671284 YP_986508.1 CDS Ajs_2269 NC_008782.1 2400559 2401761 D involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 2400559..2401761 Acidovorax sp. JS42 4671928 YP_986509.1 CDS Ajs_2270 NC_008782.1 2401872 2402624 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related; ABC transporter-like protein complement(2401872..2402624) Acidovorax sp. JS42 4671541 YP_986510.1 CDS Ajs_2271 NC_008782.1 2402625 2403272 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rfr:Rfer_2424 lipolytic enzyme, G-D-S-L; GDSL family lipase 2402625..2403272 Acidovorax sp. JS42 4671384 YP_986511.1 CDS Ajs_2272 NC_008782.1 2403288 2404124 R KEGG: rfr:Rfer_3771 integral membrane protein; integral membrane protein complement(2403288..2404124) Acidovorax sp. JS42 4671379 YP_986512.1 CDS Ajs_2273 NC_008782.1 2404219 2405466 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rfr:Rfer_2294 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; cystathionine beta-lyase complement(2404219..2405466) Acidovorax sp. JS42 4671375 YP_986513.1 CDS Ajs_2274 NC_008782.1 2405500 2405952 R PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated; transport protein complement(2405500..2405952) Acidovorax sp. JS42 4671298 YP_986514.1 CDS Ajs_2275 NC_008782.1 2406107 2407849 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 putative sulfate transporter; sulfate transporter 2406107..2407849 Acidovorax sp. JS42 4671594 YP_986515.1 CDS Ajs_2276 NC_008782.1 2407884 2408657 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1305 diguanylate cyclase; diguanylate cyclase 2407884..2408657 Acidovorax sp. JS42 4671204 YP_986516.1 CDS Ajs_2277 NC_008782.1 2408671 2409558 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rfr:Rfer_1304 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2408671..2409558 Acidovorax sp. JS42 4671656 YP_986517.1 CDS Ajs_2278 NC_008782.1 2409617 2410522 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like; pirin domain-containing protein complement(2409617..2410522) Acidovorax sp. JS42 4671713 YP_986518.1 CDS Ajs_2279 NC_008782.1 2410519 2410986 R PFAM: OsmC family protein; KEGG: pol:Bpro_2898 OsmC-like protein; OsmC family protein complement(2410519..2410986) Acidovorax sp. JS42 4671721 YP_986519.1 CDS Ajs_2281 NC_008782.1 2413626 2414612 R PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase; muramoyltetrapeptide carboxypeptidase complement(2413626..2414612) Acidovorax sp. JS42 4671775 YP_986520.1 CDS Ajs_2282 NC_008782.1 2414605 2415690 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase complement(2414605..2415690) Acidovorax sp. JS42 4671787 YP_986521.1 CDS Ajs_2283 NC_008782.1 2415744 2415980 R KEGG: rfr:Rfer_2809 hypothetical protein; hypothetical protein complement(2415744..2415980) Acidovorax sp. JS42 4671807 YP_986522.1 CDS Ajs_2284 NC_008782.1 2416009 2417223 R PFAM: sodium/glutamate symporter; KEGG: aci:ACIAD0804 sodium/glutamate symport carrier protein; sodium/glutamate symporter complement(2416009..2417223) Acidovorax sp. JS42 4671906 YP_986523.1 CDS Ajs_2285 NC_008782.1 2417354 2419432 D PFAM: peptidase U32; KEGG: rfr:Rfer_2414 peptidase U32; peptidase U32 2417354..2419432 Acidovorax sp. JS42 4671915 YP_986524.1 CDS Ajs_2286 NC_008782.1 2419729 2421009 D KEGG: reu:Reut_B4968 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 2419729..2421009 Acidovorax sp. JS42 4672484 YP_986525.1 CDS Ajs_2287 NC_008782.1 2421078 2422439 R PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein; hypothetical protein complement(2421078..2422439) Acidovorax sp. JS42 4672058 YP_986526.1 CDS Ajs_2288 NC_008782.1 2422459 2423460 R KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein; hypothetical protein complement(2422459..2423460) Acidovorax sp. JS42 4672086 YP_986527.1 CDS Ajs_2289 NC_008782.1 2423757 2424344 R PFAM: OmpW family protein; OmpF family protein; KEGG: pol:Bpro_0280 OmpW; OmpW family protein complement(2423757..2424344) Acidovorax sp. JS42 4672098 YP_986528.1 CDS Ajs_2290 NC_008782.1 2424498 2425496 R PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein; hypothetical protein complement(2424498..2425496) Acidovorax sp. JS42 4672129 YP_986529.1 CDS Ajs_2291 NC_008782.1 2425612 2426043 D KEGG: fra:Francci3_4182 hypothetical protein; hypothetical protein 2425612..2426043 Acidovorax sp. JS42 4672142 YP_986530.1 CDS Ajs_2292 NC_008782.1 2426183 2430208 D KEGG: bpm:BURPS1710b_2462 hypothetical protein; hypothetical protein 2426183..2430208 Acidovorax sp. JS42 4672188 YP_986531.1 CDS Ajs_2293 NC_008782.1 2430275 2431090 D KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 2430275..2431090 Acidovorax sp. JS42 4672222 YP_986532.1 CDS Ajs_2294 NC_008782.1 2431150 2433804 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 2431150..2433804 Acidovorax sp. JS42 4672277 YP_986533.1 CDS Ajs_2295 NC_008782.1 2433863 2434402 R KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(2433863..2434402) Acidovorax sp. JS42 4672314 YP_986534.1 CDS Ajs_2296 NC_008782.1 2434508 2434927 D PFAM: protein of unknown function DUF454; KEGG: xcb:XC_0660 hypothetical protein; hypothetical protein 2434508..2434927 Acidovorax sp. JS42 4672355 YP_986535.1 CDS Ajs_2297 NC_008782.1 2435326 2436585 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2435326..2436585) Acidovorax sp. JS42 4672442 YP_986536.1 CDS Ajs_2298 NC_008782.1 2436692 2437123 D KEGG: rfr:Rfer_2762 protein tyrosine phosphatase, receptor type, F-like; hypothetical protein 2436692..2437123 Acidovorax sp. JS42 4672648 YP_986537.1 CDS Ajs_2299 NC_008782.1 2437210 2437725 D PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192; hypothetical protein 2437210..2437725 Acidovorax sp. JS42 4672609 YP_986538.1 CDS Ajs_2300 NC_008782.1 2437959 2440193 R KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase complement(2437959..2440193) Acidovorax sp. JS42 4672785 YP_986539.1 CDS Ajs_2301 NC_008782.1 2440538 2441119 R PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase; superoxide dismutase complement(2440538..2441119) Acidovorax sp. JS42 4672805 YP_986540.1 CDS Ajs_2302 NC_008782.1 2441267 2442604 R KEGG: rfr:Rfer_3152 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(2441267..2442604) Acidovorax sp. JS42 4672830 YP_986541.1 CDS Ajs_2303 NC_008782.1 2442981 2443619 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2442981..2443619 Acidovorax sp. JS42 4672849 YP_986542.1 CDS Ajs_2304 NC_008782.1 2443651 2444076 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2443651..2444076 Acidovorax sp. JS42 4672860 YP_986543.1 CDS lpxK NC_008782.1 2444087 2445103 D transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 2444087..2445103 Acidovorax sp. JS42 4672922 YP_986544.1 CDS Ajs_2306 NC_008782.1 2445112 2445294 D PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343; hypothetical protein 2445112..2445294 Acidovorax sp. JS42 4672979 YP_986545.1 CDS Ajs_2307 NC_008782.1 2445291 2446079 D KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase 2445291..2446079 Acidovorax sp. JS42 4673036 YP_986546.1 CDS adk NC_008782.1 2446201 2446857 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 2446201..2446857 Acidovorax sp. JS42 4673051 YP_986547.1 CDS Ajs_2309 NC_008782.1 2446945 2447916 R PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase; asparaginase complement(2446945..2447916) Acidovorax sp. JS42 4673074 YP_986548.1 CDS Ajs_2310 NC_008782.1 2447999 2448673 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2447999..2448673 Acidovorax sp. JS42 4673084 YP_986549.1 CDS Ajs_2311 NC_008782.1 2448835 2449236 D hypothetical protein 2448835..2449236 Acidovorax sp. JS42 4673195 YP_986550.1 CDS Ajs_2312 NC_008782.1 2449358 2449858 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 2449358..2449858 Acidovorax sp. JS42 4673964 YP_986551.1 CDS Ajs_2313 NC_008782.1 2450088 2454113 R KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA complement(2450088..2454113) Acidovorax sp. JS42 4673894 YP_986552.1 CDS Ajs_2314 NC_008782.1 2454161 2455501 R PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding; SAF domain; KEGG: pol:Bpro_1713 oxidoreductase-like; SAF domain-containing protein complement(2454161..2455501) Acidovorax sp. JS42 4673372 YP_986553.1 CDS Ajs_2315 NC_008782.1 2455792 2456979 D PFAM: metallophosphoesterase; KEGG: eca:ECA1908 putative membrane-attached phosphoesterase; metallophosphoesterase 2455792..2456979 Acidovorax sp. JS42 4673404 YP_986554.1 CDS Ajs_2316 NC_008782.1 2457163 2457861 R PFAM: nitroreductase; KEGG: bxe:Bxe_B0222 putative nitroreductase; nitroreductase complement(2457163..2457861) Acidovorax sp. JS42 4673439 YP_986555.1 CDS Ajs_2317 NC_008782.1 2457864 2459033 R KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(2457864..2459033) Acidovorax sp. JS42 4673519 YP_986556.1 CDS Ajs_2318 NC_008782.1 2459030 2460514 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2459030..2460514) Acidovorax sp. JS42 4673568 YP_986557.1 CDS Ajs_2319 NC_008782.1 2460511 2461095 R PFAM: BioY protein; KEGG: rsp:RSP_2173 putative biotin biosynthesis protein BioY; BioY protein complement(2460511..2461095) Acidovorax sp. JS42 4673590 YP_986558.1 CDS Ajs_2320 NC_008782.1 2461132 2461725 R PFAM: cobalt transport protein; KEGG: rsp:RSP_2174 putative ABC transporter, inner membrane subunit; cobalt transport protein complement(2461132..2461725) Acidovorax sp. JS42 4673623 YP_986559.1 CDS Ajs_2321 NC_008782.1 2461743 2462597 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2175 ABC transporter, ATPase subunit; ABC transporter-like protein complement(2461743..2462597) Acidovorax sp. JS42 4673703 YP_986560.1 CDS Ajs_2322 NC_008782.1 2462772 2464049 D PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_2369 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2462772..2464049 Acidovorax sp. JS42 4673725 YP_986561.1 CDS Ajs_2323 NC_008782.1 2464130 2464477 R KEGG: bba:Bd1787 hypothetical protein; hypothetical protein complement(2464130..2464477) Acidovorax sp. JS42 4673741 YP_986562.1 CDS Ajs_2324 NC_008782.1 2464583 2465251 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_0453 methyltransferase type 12; type 11 methyltransferase 2464583..2465251 Acidovorax sp. JS42 4673766 YP_986563.1 CDS Ajs_2325 NC_008782.1 2465352 2466326 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065; hypothetical protein complement(2465352..2466326) Acidovorax sp. JS42 4673790 YP_986564.1 CDS Ajs_2326 NC_008782.1 2466829 2468037 D PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like; acyltransferase 3 2466829..2468037 Acidovorax sp. JS42 4673812 YP_986565.1 CDS Ajs_2327 NC_008782.1 2468324 2469670 D catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2468324..2469670 Acidovorax sp. JS42 4673960 YP_986566.1 CDS Ajs_2328 NC_008782.1 2469674 2470564 R PFAM: beta-lactamase; KEGG: mes:Meso_2215 beta-lactamase; beta-lactamase complement(2469674..2470564) Acidovorax sp. JS42 4674001 YP_986567.1 CDS Ajs_2329 NC_008782.1 2470668 2471534 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sal:Sala_1903 transcriptional regulator, LysR family; LysR family transcriptional regulator 2470668..2471534 Acidovorax sp. JS42 4674059 YP_986568.1 CDS Ajs_2330 NC_008782.1 2471629 2472030 D KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein 2471629..2472030 Acidovorax sp. JS42 4674191 YP_986569.1 CDS Ajs_2332 NC_008782.1 2474422 2475975 D PFAM: PepSY-associated TM helix domain protein; KEGG: bpe:BP2921 hypothetical protein; PepSY-associated TM helix domain-containing protein 2474422..2475975 Acidovorax sp. JS42 4673655 YP_986570.1 CDS Ajs_2333 NC_008782.1 2476001 2476672 D PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like; glutaredoxin 2476001..2476672 Acidovorax sp. JS42 4673562 YP_986571.1 CDS Ajs_2334 NC_008782.1 2476759 2477283 R PFAM: Disulphide bond formation protein DsbB; KEGG: rfr:Rfer_2104 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(2476759..2477283) Acidovorax sp. JS42 4673276 YP_986572.1 CDS Ajs_2335 NC_008782.1 2477346 2478473 R KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase complement(2477346..2478473) Acidovorax sp. JS42 4673512 YP_986573.1 CDS Ajs_2336 NC_008782.1 2478485 2479396 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter inner membrane subunit CysW complement(2478485..2479396) Acidovorax sp. JS42 4673472 YP_986574.1 CDS Ajs_2337 NC_008782.1 2479393 2480244 R TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1761 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter inner membrane subunit CysT complement(2479393..2480244) Acidovorax sp. JS42 4673444 YP_986575.1 CDS Ajs_2338 NC_008782.1 2480392 2481399 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1762 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein complement(2480392..2481399) Acidovorax sp. JS42 4673430 YP_986576.1 CDS Ajs_2339 NC_008782.1 2481680 2482633 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2481680..2482633) Acidovorax sp. JS42 4673429 YP_986577.1 CDS Ajs_2340 NC_008782.1 2482761 2483411 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase; (acyl-carrier-protein) phosphodiesterase 2482761..2483411 Acidovorax sp. JS42 4673392 YP_986578.1 CDS Ajs_2341 NC_008782.1 2483535 2484086 R PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(2483535..2484086) Acidovorax sp. JS42 4673223 YP_986579.1 CDS Ajs_2342 NC_008782.1 2484253 2485053 R TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rfr:Rfer_1770 lipoprotein YaeC; YaeC family lipoprotein complement(2484253..2485053) Acidovorax sp. JS42 4673210 YP_986580.1 CDS Ajs_2343 NC_008782.1 2485258 2486364 R KEGG: bpa:BPP0392 hypothetical protein; hypothetical protein complement(2485258..2486364) Acidovorax sp. JS42 4673205 YP_986581.1 CDS Ajs_2344 NC_008782.1 2486526 2487191 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2368 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2486526..2487191) Acidovorax sp. JS42 4673214 YP_986582.1 CDS metN NC_008782.1 2487202 2488248 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(2487202..2488248) Acidovorax sp. JS42 4673216 YP_986583.1 CDS Ajs_2346 NC_008782.1 2488789 2490021 D PFAM: major facilitator superfamily MFS_1; KEGG: mmc:Mmcs_4056 major facilitator superfamily MFS_1; major facilitator superfamily transporter 2488789..2490021 Acidovorax sp. JS42 4673218 YP_986584.1 CDS Ajs_2347 NC_008782.1 2490031 2490438 R KEGG: pol:Bpro_2271 membrane protein-like; membrane protein complement(2490031..2490438) Acidovorax sp. JS42 4673221 YP_986585.1 CDS recR NC_008782.1 2490503 2491093 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(2490503..2491093) Acidovorax sp. JS42 4673023 YP_986586.1 CDS Ajs_2349 NC_008782.1 2491252 2491584 R PFAM: conserved hypothetical protein 103; KEGG: rfr:Rfer_1458 conserved hypothetical protein 103; hypothetical protein complement(2491252..2491584) Acidovorax sp. JS42 4672975 YP_986587.1 CDS Ajs_2350 NC_008782.1 2491615 2493654 R KEGG: rfr:Rfer_1457 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(2491615..2493654) Acidovorax sp. JS42 4672974 YP_986588.1 CDS Ajs_2351 NC_008782.1 2493709 2494170 D hypothetical protein 2493709..2494170 Acidovorax sp. JS42 4672940 YP_986589.1 CDS Ajs_2352 NC_008782.1 2494519 2495217 D hypothetical protein 2494519..2495217 Acidovorax sp. JS42 4672881 YP_986590.1 CDS Ajs_2353 NC_008782.1 2495303 2496646 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2266 HI0933-like protein; hypothetical protein complement(2495303..2496646) Acidovorax sp. JS42 4672828 YP_986591.1 CDS Ajs_2354 NC_008782.1 2496660 2497355 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb2135 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase; type 11 methyltransferase complement(2496660..2497355) Acidovorax sp. JS42 4672817 YP_986592.1 CDS Ajs_2355 NC_008782.1 2497459 2500764 R PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase; UvrD/REP helicase complement(2497459..2500764) Acidovorax sp. JS42 4672637 YP_986593.1 CDS Ajs_2356 NC_008782.1 2500757 2503327 R KEGG: pol:Bpro_2264 RecB family exonuclease-like; exonuclease-like protein complement(2500757..2503327) Acidovorax sp. JS42 4672526 YP_986594.1 CDS Ajs_2357 NC_008782.1 2503443 2503775 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin; thioredoxin 2503443..2503775 Acidovorax sp. JS42 4672778 YP_986595.1 CDS rho NC_008782.1 2504015 2505277 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2504015..2505277 Acidovorax sp. JS42 4672600 YP_986596.1 CDS Ajs_2359 NC_008782.1 2505494 2506972 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_1686 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 2505494..2506972 Acidovorax sp. JS42 4672605 YP_986597.1 CDS Ajs_2360 NC_008782.1 2506993 2508063 D PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_0168 secretion protein HlyD; secretion protein HlyD family protein 2506993..2508063 Acidovorax sp. JS42 4672606 YP_986598.1 CDS Ajs_2361 NC_008782.1 2508088 2510898 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: mfa:Mfla_0167 response regulator receiver domain protein (CheY-like); ABC transporter-like protein 2508088..2510898 Acidovorax sp. JS42 4672608 YP_986599.1 CDS Ajs_2362 NC_008782.1 2510902 2512050 D PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_0166 ABC-2; ABC-2 type transporter 2510902..2512050 Acidovorax sp. JS42 4672610 YP_986600.1 CDS Ajs_2363 NC_008782.1 2512148 2512402 D PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31; 50S ribosomal protein L31P 2512148..2512402 Acidovorax sp. JS42 4672611 YP_986601.1 CDS Ajs_2364 NC_008782.1 2512553 2514250 D KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein; putative inner membrane transmembrane protein 2512553..2514250 Acidovorax sp. JS42 4672613 YP_986602.1 CDS Ajs_2365 NC_008782.1 2514250 2515626 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein; MATE efflux family protein 2514250..2515626 Acidovorax sp. JS42 4672614 YP_986603.1 CDS Ajs_2366 NC_008782.1 2515571 2516968 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_0577 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(2515571..2516968) Acidovorax sp. JS42 4672615 YP_986604.1 CDS Ajs_2367 NC_008782.1 2517055 2517762 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(2517055..2517762) Acidovorax sp. JS42 4672616 YP_986605.1 CDS Ajs_2368 NC_008782.1 2517779 2518480 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(2517779..2518480) Acidovorax sp. JS42 4672617 YP_986606.1 CDS Ajs_2369 NC_008782.1 2518495 2519277 R KEGG: pol:Bpro_2255 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(2518495..2519277) Acidovorax sp. JS42 4672618 YP_986607.1 CDS pstA NC_008782.1 2519300 2520181 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(2519300..2520181) Acidovorax sp. JS42 4672619 YP_986608.1 CDS Ajs_2371 NC_008782.1 2520178 2521191 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter inner membrane subunit PstC complement(2520178..2521191) Acidovorax sp. JS42 4672622 YP_986609.1 CDS Ajs_2372 NC_008782.1 2521270 2522310 R TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein; phosphate ABC transporter periplasmic phosphate-binding protein complement(2521270..2522310) Acidovorax sp. JS42 4672623 YP_986610.1 CDS Ajs_2373 NC_008782.1 2522511 2523002 D PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin 2522511..2523002 Acidovorax sp. JS42 4672624 YP_986611.1 CDS Ajs_2374 NC_008782.1 2523034 2524167 D KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2523034..2524167 Acidovorax sp. JS42 4672625 YP_986612.1 CDS Ajs_2375 NC_008782.1 2524252 2525733 D PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase; Ppx/GppA phosphatase 2524252..2525733 Acidovorax sp. JS42 4672627 YP_986613.1 CDS Ajs_2376 NC_008782.1 2525799 2526233 D KEGG: pol:Bpro_2248 hypothetical protein; hypothetical protein 2525799..2526233 Acidovorax sp. JS42 4672628 YP_986614.1 CDS Ajs_2377 NC_008782.1 2526285 2526749 R PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_2018 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA complement(2526285..2526749) Acidovorax sp. JS42 4672630 YP_986615.1 CDS Ajs_2378 NC_008782.1 2526746 2528917 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2526746..2528917) Acidovorax sp. JS42 4672632 YP_986616.1 CDS Ajs_2379 NC_008782.1 2529033 2529869 R KEGG: rfr:Rfer_2028 hypothetical protein; ornithine-acyl[acyl carrier protein] N-acyltransferase complement(2529033..2529869) Acidovorax sp. JS42 4672634 YP_986617.1 CDS Ajs_2380 NC_008782.1 2530052 2532322 D KEGG: rfr:Rfer_3192 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase 2530052..2532322 Acidovorax sp. JS42 4672635 YP_986618.1 CDS glmM NC_008782.1 2532390 2533724 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2532390..2533724) Acidovorax sp. JS42 4672638 YP_986619.1 CDS Ajs_2382 NC_008782.1 2533737 2534588 R KEGG: rfr:Rfer_2012 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2533737..2534588) Acidovorax sp. JS42 4672639 YP_986620.1 CDS Ajs_2383 NC_008782.1 2534660 2536579 R KEGG: rfr:Rfer_2011 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; FtsH peptidase complement(2534660..2536579) Acidovorax sp. JS42 4672640 YP_986621.1 CDS Ajs_2384 NC_008782.1 2536723 2537436 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2536723..2537436) Acidovorax sp. JS42 4672642 YP_986622.1 CDS Ajs_2385 NC_008782.1 2537463 2537936 D PFAM: protein of unknown function UPF0044; KEGG: rfr:Rfer_2009 protein of unknown function UPF0044; hypothetical protein 2537463..2537936 Acidovorax sp. JS42 4672643 YP_986623.1 CDS Ajs_2386 NC_008782.1 2537948 2538709 D KEGG: par:Psyc_1205 hypothetical protein; hypothetical protein 2537948..2538709 Acidovorax sp. JS42 4672644 YP_986624.1 CDS Ajs_2387 NC_008782.1 2538767 2539648 R KEGG: bxe:Bxe_A3699 hypothetical protein; hypothetical protein complement(2538767..2539648) Acidovorax sp. JS42 4672645 YP_986625.1 CDS Ajs_2388 NC_008782.1 2539655 2540068 R KEGG: rfr:Rfer_2008 hypothetical protein; hypothetical protein complement(2539655..2540068) Acidovorax sp. JS42 4672647 YP_986626.1 CDS Ajs_2389 NC_008782.1 2540080 2540556 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor; transcription elongation factor GreA complement(2540080..2540556) Acidovorax sp. JS42 4672651 YP_986627.1 CDS Ajs_2390 NC_008782.1 2540684 2543845 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit; carbamoyl-phosphate synthase large subunit complement(2540684..2543845) Acidovorax sp. JS42 4672652 YP_986628.1 CDS Ajs_2391 NC_008782.1 2543946 2544347 R hypothetical protein complement(2543946..2544347) Acidovorax sp. JS42 4672658 YP_986629.1 CDS Ajs_2392 NC_008782.1 2544369 2545541 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: rfr:Rfer_2004 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(2544369..2545541) Acidovorax sp. JS42 4672659 YP_986630.1 CDS Ajs_2393 NC_008782.1 2545884 2546312 R PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2545884..2546312) Acidovorax sp. JS42 4672303 YP_986631.1 CDS ihfA NC_008782.1 2546413 2546763 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(2546413..2546763) Acidovorax sp. JS42 4672267 YP_986632.1 CDS pheT NC_008782.1 2546760 2549204 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2546760..2549204) Acidovorax sp. JS42 4672194 YP_986633.1 CDS pheS NC_008782.1 2549326 2550378 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2549326..2550378) Acidovorax sp. JS42 4671985 YP_986634.1 CDS rplT NC_008782.1 2550481 2550840 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2550481..2550840) Acidovorax sp. JS42 4671958 YP_986635.1 CDS rpmI NC_008782.1 2550867 2551070 R PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35; 50S ribosomal protein L35 complement(2550867..2551070) Acidovorax sp. JS42 4671960 YP_986636.1 CDS Ajs_2399 NC_008782.1 2551244 2551861 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rfr:Rfer_1337 translation initiation factor IF-3; translation initiation factor 3 complement(2551244..2551861) Acidovorax sp. JS42 4671961 YP_986637.1 CDS thrS NC_008782.1 2551921 2553840 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2551921..2553840) Acidovorax sp. JS42 4671495 YP_986638.1 CDS Ajs_2401 NC_008782.1 2554123 2555454 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: rfr:Rfer_1335 isocitrate lyase; isocitrate lyase complement(2554123..2555454) Acidovorax sp. JS42 4671720 YP_986639.1 CDS Ajs_2402 NC_008782.1 2555728 2556729 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1956 protein of unknown function DUF6, transmembrane; hypothetical protein 2555728..2556729 Acidovorax sp. JS42 4671434 YP_986640.1 CDS Ajs_2403 NC_008782.1 2556739 2557245 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(2556739..2557245) Acidovorax sp. JS42 4671467 YP_986641.1 CDS Ajs_2404 NC_008782.1 2557469 2557759 D PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b; SWIB/MDM2 domain-containing protein 2557469..2557759 Acidovorax sp. JS42 4671437 YP_986642.1 CDS Ajs_2405 NC_008782.1 2557946 2558218 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3050 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 2557946..2558218 Acidovorax sp. JS42 4671402 YP_986643.1 CDS Ajs_2406 NC_008782.1 2558326 2559027 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like; TonB family protein 2558326..2559027 Acidovorax sp. JS42 4671583 YP_986644.1 CDS Ajs_2407 NC_008782.1 2559045 2559761 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2559045..2559761 Acidovorax sp. JS42 4671339 YP_986645.1 CDS Ajs_2408 NC_008782.1 2559768 2560178 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2559768..2560178 Acidovorax sp. JS42 4671352 YP_986646.1 CDS Ajs_2409 NC_008782.1 2560375 2560584 D KEGG: pol:Bpro_3054 hypothetical protein; hypothetical protein 2560375..2560584 Acidovorax sp. JS42 4671353 YP_986647.1 CDS Ajs_2410 NC_008782.1 2560806 2561213 R PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 protein of unknown function DUF336; hypothetical protein complement(2560806..2561213) Acidovorax sp. JS42 4671354 YP_986648.1 CDS Ajs_2411 NC_008782.1 2561441 2562133 D PFAM: protein of unknown function UPF0005; KEGG: rfr:Rfer_2776 protein of unknown function UPF0005; hypothetical protein 2561441..2562133 Acidovorax sp. JS42 4671355 YP_986649.1 CDS Ajs_2412 NC_008782.1 2562247 2562633 D KEGG: rfr:Rfer_2777 hypothetical protein; hypothetical protein 2562247..2562633 Acidovorax sp. JS42 4671357 YP_986650.1 CDS rumA NC_008782.1 2562710 2564158 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(2562710..2564158) Acidovorax sp. JS42 4671358 YP_986651.1 CDS Ajs_2414 NC_008782.1 2564208 2564534 R hypothetical protein complement(2564208..2564534) Acidovorax sp. JS42 4671360 YP_986652.1 CDS Ajs_2415 NC_008782.1 2564563 2565231 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2564563..2565231 Acidovorax sp. JS42 4671361 YP_986653.1 CDS Ajs_2416 NC_008782.1 2565348 2566169 D KEGG: eba:ebA4513 hypothetical protein; hypothetical protein 2565348..2566169 Acidovorax sp. JS42 4671362 YP_986654.1 CDS Ajs_2417 NC_008782.1 2566306 2566785 D KEGG: tbd:Tbd_2155 hypothetical protein; hypothetical protein 2566306..2566785 Acidovorax sp. JS42 4671364 YP_986655.1 CDS Ajs_2418 NC_008782.1 2566862 2567392 D hypothetical protein 2566862..2567392 Acidovorax sp. JS42 4671365 YP_986656.1 CDS Ajs_2419 NC_008782.1 2567341 2567820 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0399 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(2567341..2567820) Acidovorax sp. JS42 4671366 YP_986657.1 CDS Ajs_2420 NC_008782.1 2568027 2571602 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: pfo:Pfl_0452 delta-1-pyrroline-5-carboxylate dehydrogenase 3; delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase 2568027..2571602 Acidovorax sp. JS42 4671367 YP_986658.1 CDS Ajs_2421 NC_008782.1 2571668 2572273 R KEGG: bcn:Bcen_6095 2',5' RNA ligase; 2',5' RNA ligase complement(2571668..2572273) Acidovorax sp. JS42 4671368 YP_986659.1 CDS Ajs_2422 NC_008782.1 2572688 2573470 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB1245 tetrathionate reductase subunit B; 4Fe-4S ferredoxin 2572688..2573470 Acidovorax sp. JS42 4671369 YP_986660.1 CDS Ajs_2423 NC_008782.1 2573488 2574534 D PFAM: Polysulphide reductase, NrfD; KEGG: bbr:BB1244 tetrathionate reductase subunit C; polysulfide reductase NrfD 2573488..2574534 Acidovorax sp. JS42 4671370 YP_986661.1 CDS Ajs_2424 NC_008782.1 2574635 2577829 D PFAM: molydopterin dinucleotide-binding region; KEGG: bpa:BPP1028 tetrathionate reductase subunit A; molydopterin dinucleotide-binding region 2574635..2577829 Acidovorax sp. JS42 4671371 YP_986662.1 CDS Ajs_2425 NC_008782.1 2578382 2579275 D KEGG: bca:BCE_0854 hypothetical protein; hypothetical protein 2578382..2579275 Acidovorax sp. JS42 4671372 YP_986663.1 CDS Ajs_2426 NC_008782.1 2579272 2581842 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_1150 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 2579272..2581842 Acidovorax sp. JS42 4671374 YP_986664.1 CDS Ajs_2427 NC_008782.1 2581835 2582134 D KEGG: bja:bll1929 hypothetical protein; hypothetical protein 2581835..2582134 Acidovorax sp. JS42 4671376 YP_986665.1 CDS Ajs_2428 NC_008782.1 2582635 2585202 R SMART: DEXDc2; helicase c2; KEGG: bps:BPSS0856 hypothetical protein; helicase c2 complement(2582635..2585202) Acidovorax sp. JS42 4671377 YP_986666.1 CDS Ajs_2429 NC_008782.1 2585199 2586884 R KEGG: bur:Bcep18194_B1631 hypothetical protein; hypothetical protein complement(2585199..2586884) Acidovorax sp. JS42 4671380 YP_986667.1 CDS Ajs_2430 NC_008782.1 2586950 2587951 R KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein complement(2586950..2587951) Acidovorax sp. JS42 4671382 YP_986668.1 CDS Ajs_2431 NC_008782.1 2588090 2588767 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_2791 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2588090..2588767 Acidovorax sp. JS42 4671383 YP_986669.1 CDS Ajs_2432 NC_008782.1 2588764 2590224 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tbd:Tbd_2792 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2588764..2590224 Acidovorax sp. JS42 4671385 YP_986670.1 CDS Ajs_2433 NC_008782.1 2590232 2591065 D PFAM: Redoxin domain protein; KEGG: bbr:BB2319 putative thiol:disulfide interchange protein; redoxin domain-containing protein 2590232..2591065 Acidovorax sp. JS42 4671386 YP_986671.1 CDS Ajs_2434 NC_008782.1 2591104 2592006 R PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4844 beta-lactamase-like; beta-lactamase domain-containing protein complement(2591104..2592006) Acidovorax sp. JS42 4671388 YP_986672.1 CDS Ajs_2435 NC_008782.1 2592114 2592437 D PFAM: regulatory protein, ArsR; KEGG: pfo:Pfl_3459 regulatory protein, ArsR; ArsR family transcriptional regulator 2592114..2592437 Acidovorax sp. JS42 4671390 YP_986673.1 CDS Ajs_2436 NC_008782.1 2592442 2592885 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 2592442..2592885 Acidovorax sp. JS42 4671537 YP_986674.1 CDS Ajs_2437 NC_008782.1 2592908 2593330 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bxe:Bxe_B1027 hypothetical protein; hypothetical protein 2592908..2593330 Acidovorax sp. JS42 4671391 YP_986675.1 CDS Ajs_2438 NC_008782.1 2593428 2594051 D KEGG: pol:Bpro_4848 protein of unknown function DUF599; hypothetical protein 2593428..2594051 Acidovorax sp. JS42 4671392 YP_986676.1 CDS Ajs_2439 NC_008782.1 2594056 2594703 R hypothetical protein complement(2594056..2594703) Acidovorax sp. JS42 4671394 YP_986677.1 CDS Ajs_2440 NC_008782.1 2594959 2595657 R PFAM: Negative transcriptional regulator; KEGG: bbr:BB2357 hypothetical protein; negative transcriptional regulator complement(2594959..2595657) Acidovorax sp. JS42 4671530 YP_986678.1 CDS Ajs_2441 NC_008782.1 2595829 2596410 R PFAM: regulatory protein, TetR; KEGG: rme:Rmet_3608 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2595829..2596410) Acidovorax sp. JS42 4671398 YP_986679.1 CDS Ajs_2442 NC_008782.1 2596517 2597845 D PFAM: beta-ketoacyl synthase; KEGG: pae:PA1373 3-oxoacyl-acyl carrier protein synthase II; beta-ketoacyl synthase 2596517..2597845 Acidovorax sp. JS42 4670997 YP_986680.1 CDS Ajs_2443 NC_008782.1 2597939 2599534 D PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit 2597939..2599534 Acidovorax sp. JS42 4670981 YP_986681.1 CDS Ajs_2444 NC_008782.1 2599531 2600295 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB 2599531..2600295 Acidovorax sp. JS42 4670946 YP_986682.1 CDS Ajs_2445 NC_008782.1 2600249 2600689 R hypothetical protein complement(2600249..2600689) Acidovorax sp. JS42 4670892 YP_986683.1 CDS Ajs_2446 NC_008782.1 2600829 2601488 R hypothetical protein complement(2600829..2601488) Acidovorax sp. JS42 4670805 YP_986684.1 CDS Ajs_2447 NC_008782.1 2601481 2602572 R KEGG: dar:Daro_1658 hypothetical protein; hypothetical protein complement(2601481..2602572) Acidovorax sp. JS42 4670778 YP_986685.1 CDS Ajs_2448 NC_008782.1 2602657 2603685 R KEGG: ppu:PP_2495 hypothetical protein; hypothetical protein complement(2602657..2603685) Acidovorax sp. JS42 4670743 YP_986686.1 CDS Ajs_2449 NC_008782.1 2603815 2604804 R KEGG: ppu:PP_2496 hypothetical protein; hypothetical protein complement(2603815..2604804) Acidovorax sp. JS42 4670721 YP_986687.1 CDS Ajs_2450 NC_008782.1 2604823 2605200 R KEGG: dar:Daro_1655 hypothetical protein; hypothetical protein complement(2604823..2605200) Acidovorax sp. JS42 4670653 YP_986688.1 CDS Ajs_2451 NC_008782.1 2605665 2606975 D KEGG: rpd:RPD_2285 hypothetical protein; hypothetical protein 2605665..2606975 Acidovorax sp. JS42 4670630 YP_986689.1 CDS Ajs_2452 NC_008782.1 2607034 2608137 R KEGG: psb:Psyr_4511 hypothetical protein; hypothetical protein complement(2607034..2608137) Acidovorax sp. JS42 4670614 YP_986690.1 CDS Ajs_2453 NC_008782.1 2608143 2609372 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bpa:BPP0485 plasmid-related protein; helix-turn-helix domain-containing protein complement(2608143..2609372) Acidovorax sp. JS42 4671324 YP_986691.1 CDS Ajs_2454 NC_008782.1 2609369 2609674 R hypothetical protein complement(2609369..2609674) Acidovorax sp. JS42 4670687 YP_986692.1 CDS Ajs_2455 NC_008782.1 2609863 2611377 R PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(2609863..2611377) Acidovorax sp. JS42 4670801 YP_986693.1 CDS Ajs_2456 NC_008782.1 2611458 2611769 R PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein complement(2611458..2611769) Acidovorax sp. JS42 4670839 YP_986694.1 CDS Ajs_2457 NC_008782.1 2611790 2612242 R PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein complement(2611790..2612242) Acidovorax sp. JS42 4670937 YP_986695.1 CDS Ajs_2458 NC_008782.1 2612889 2614649 R PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase; UvrD/REP helicase complement(2612889..2614649) Acidovorax sp. JS42 4671014 YP_986696.1 CDS Ajs_2459 NC_008782.1 2614646 2616466 R KEGG: eba:ebA6581 hypothetical protein; hypothetical protein complement(2614646..2616466) Acidovorax sp. JS42 4671165 YP_986697.1 CDS Ajs_2460 NC_008782.1 2616693 2617934 R PFAM: phage integrase family protein; KEGG: rfr:Rfer_2830 phage integrase; phage integrase family protein complement(2616693..2617934) Acidovorax sp. JS42 4671279 YP_986698.1 CDS Ajs_2461 NC_008782.1 2618531 2619208 R KEGG: rfr:Rfer_2829 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(2618531..2619208) Acidovorax sp. JS42 4671874 YP_986699.1 CDS Ajs_2462 NC_008782.1 2619205 2619918 R Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase complement(2619205..2619918) Acidovorax sp. JS42 4671603 YP_986700.1 CDS Ajs_2463 NC_008782.1 2619998 2620654 R PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB; OmpA/MotB domain-containing protein complement(2619998..2620654) Acidovorax sp. JS42 4671726 YP_986701.1 CDS Ajs_2464 NC_008782.1 2620848 2623514 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2620848..2623514 Acidovorax sp. JS42 4671773 YP_986702.1 CDS Ajs_2465 NC_008782.1 2623578 2624693 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2623578..2624693 Acidovorax sp. JS42 4671503 YP_986703.1 CDS Ajs_2466 NC_008782.1 2624810 2625925 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase; chorismate mutase / prephenate dehydratase 2624810..2625925 Acidovorax sp. JS42 4671929 YP_986704.1 CDS Ajs_2467 NC_008782.1 2625935 2626819 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase; prephenate dehydrogenase 2625935..2626819 Acidovorax sp. JS42 4672051 YP_986705.1 CDS Ajs_2468 NC_008782.1 2626819 2628840 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase 2626819..2628840 Acidovorax sp. JS42 4672080 YP_986706.1 CDS rpsA NC_008782.1 2629014 2630699 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2629014..2630699 Acidovorax sp. JS42 4672101 YP_986707.1 CDS Ajs_2470 NC_008782.1 2630821 2631132 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit; integration host factor subunit beta 2630821..2631132 Acidovorax sp. JS42 4672161 YP_986708.1 CDS Ajs_2471 NC_008782.1 2631262 2631594 D KEGG: rfr:Rfer_1564 hypothetical protein; hypothetical protein 2631262..2631594 Acidovorax sp. JS42 4672218 YP_986709.1 CDS Ajs_2472 NC_008782.1 2631584 2632741 D PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_1563 putative transmembrane protein; hypothetical protein 2631584..2632741 Acidovorax sp. JS42 4672234 YP_986710.1 CDS Ajs_2473 NC_008782.1 2632750 2633094 D KEGG: pol:Bpro_1783 hypothetical protein; hypothetical protein 2632750..2633094 Acidovorax sp. JS42 4672304 YP_986711.1 CDS Ajs_2474 NC_008782.1 2633206 2636160 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 2633206..2636160 Acidovorax sp. JS42 4672026 YP_986712.1 CDS Ajs_2475 NC_008782.1 2636160 2636525 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2636160..2636525 Acidovorax sp. JS42 4672034 YP_986713.1 CDS Ajs_2476 NC_008782.1 2636522 2638258 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2636522..2638258 Acidovorax sp. JS42 4672418 YP_986714.1 CDS Ajs_2477 NC_008782.1 2638255 2638746 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E 2638255..2638746 Acidovorax sp. JS42 4672455 YP_986715.1 CDS Ajs_2478 NC_008782.1 2638743 2639024 D PFAM: multiple resistance and pH regulation protein F; KEGG: psp:PSPPH_3176 potassium efflux system protein PhaF; multiple resistance and pH regulation protein F 2638743..2639024 Acidovorax sp. JS42 4672487 YP_986716.1 CDS Ajs_2479 NC_008782.1 2639021 2639389 D PFAM: Na+/H+ antiporter subunit; KEGG: pen:PSEEN3538 multicomponent potassium-proton antiporter, subunit G (PhaG); Na+/H+ antiporter subunit 2639021..2639389 Acidovorax sp. JS42 4673208 YP_986717.1 CDS Ajs_2480 NC_008782.1 2639460 2643212 R PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing); 5-oxoprolinase complement(2639460..2643212) Acidovorax sp. JS42 4672802 YP_986718.1 CDS Ajs_2481 NC_008782.1 2643299 2645122 D KEGG: bpa:BPP4392 hypothetical protein; hypothetical protein 2643299..2645122 Acidovorax sp. JS42 4672876 YP_986719.1 CDS Ajs_2482 NC_008782.1 2645168 2645746 R KEGG: rme:Rmet_1871 putative transcriptional regulator; putative transcriptional regulator complement(2645168..2645746) Acidovorax sp. JS42 4672894 YP_986720.1 CDS Ajs_2483 NC_008782.1 2645950 2646927 D PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1774 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 2645950..2646927 Acidovorax sp. JS42 4673087 YP_986721.1 CDS Ajs_2484 NC_008782.1 2646965 2647474 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1773 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ 2646965..2647474 Acidovorax sp. JS42 4673144 YP_986722.1 CDS Ajs_2485 NC_008782.1 2647490 2648794 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1772 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 2647490..2648794 Acidovorax sp. JS42 4673139 YP_986723.1 CDS Ajs_2486 NC_008782.1 2648837 2649232 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2648837..2649232 Acidovorax sp. JS42 4674008 YP_986724.1 CDS Ajs_2487 NC_008782.1 2649364 2650227 D PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730; hypothetical protein 2649364..2650227 Acidovorax sp. JS42 4674026 YP_986725.1 CDS Ajs_2488 NC_008782.1 2650282 2651469 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2650282..2651469) Acidovorax sp. JS42 4673145 YP_986726.1 CDS Ajs_2489 NC_008782.1 2651471 2653171 R PFAM: protein of unknown function DUF195; KEGG: bur:Bcep18194_A4217 protein of unknown function DUF195; hypothetical protein complement(2651471..2653171) Acidovorax sp. JS42 4673453 YP_986727.1 CDS Ajs_2490 NC_008782.1 2653235 2654215 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2653235..2654215) Acidovorax sp. JS42 4673500 YP_986728.1 CDS Ajs_2491 NC_008782.1 2654295 2655710 R KEGG: pol:Bpro_3079 putative transmembrane protein; hypothetical protein complement(2654295..2655710) Acidovorax sp. JS42 4673591 YP_986729.1 CDS Ajs_2492 NC_008782.1 2655775 2656971 R catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2655775..2656971) Acidovorax sp. JS42 4673616 YP_986730.1 CDS Ajs_2493 NC_008782.1 2657151 2657639 R PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2141 thioesterase superfamily; thioesterase superfamily protein complement(2657151..2657639) Acidovorax sp. JS42 4673676 YP_986731.1 CDS Ajs_2494 NC_008782.1 2657909 2658472 D TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin; phasin family protein 2657909..2658472 Acidovorax sp. JS42 4673715 YP_986732.1 CDS Ajs_2496 NC_008782.1 2660419 2661309 D PFAM: peptidase M23B; KEGG: bpa:BPP1182 putative peptidase; peptidase M23B 2660419..2661309 Acidovorax sp. JS42 4673828 YP_986733.1 CDS Ajs_2497 NC_008782.1 2661306 2661956 D PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase E 2661306..2661956 Acidovorax sp. JS42 4673994 YP_986734.1 CDS Ajs_2498 NC_008782.1 2662059 2663099 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO1969 hypothetical protein; Sel1 domain-containing protein 2662059..2663099 Acidovorax sp. JS42 4673982 YP_986735.1 CDS Ajs_2499 NC_008782.1 2663161 2663835 R hypothetical protein complement(2663161..2663835) Acidovorax sp. JS42 4673895 YP_986736.1 CDS Ajs_2500 NC_008782.1 2663924 2664826 R TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD; transporter DMT superfamily protein complement(2663924..2664826) Acidovorax sp. JS42 4674094 YP_986737.1 CDS Ajs_2501 NC_008782.1 2665191 2665808 D PFAM: nuclease (SNase domain protein); KEGG: mca:MCA2942 prophage MuMc02, nuclease, putative; nuclease 2665191..2665808 Acidovorax sp. JS42 4674047 YP_986738.1 CDS Ajs_2502 NC_008782.1 2665849 2666796 R PFAM: phosphoesterase, DHHA1; KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1; phosphoesterase, DHHA1 complement(2665849..2666796) Acidovorax sp. JS42 4674496 YP_986739.1 CDS Ajs_2503 NC_008782.1 2666935 2667204 D hypothetical protein 2666935..2667204 Acidovorax sp. JS42 4674658 YP_986740.1 CDS Ajs_2504 NC_008782.1 2667313 2667600 D hypothetical protein 2667313..2667600 Acidovorax sp. JS42 4674636 YP_986741.1 CDS Ajs_2505 NC_008782.1 2667597 2668403 D PFAM: pseudouridine synthase; KEGG: gsu:GSU3160 RNA pseudouridine synthase family protein; tRNA pseudouridine synthase C 2667597..2668403 Acidovorax sp. JS42 4674614 YP_986742.1 CDS Ajs_2506 NC_008782.1 2668628 2669197 D PFAM: MgtC/SapB transporter; KEGG: pfl:PFL_2871 transporter, MgtC family; MgtC/SapB transporter 2668628..2669197 Acidovorax sp. JS42 4674568 YP_986743.1 CDS Ajs_2507 NC_008782.1 2669252 2669461 D KEGG: pol:Bpro_3354 hypothetical protein; hypothetical protein 2669252..2669461 Acidovorax sp. JS42 4674530 YP_986744.1 CDS Ajs_2508 NC_008782.1 2669620 2671614 D KEGG: pen:PSEEN2301 hypothetical protein; hypothetical protein 2669620..2671614 Acidovorax sp. JS42 4674484 YP_986745.1 CDS Ajs_2509 NC_008782.1 2671700 2672173 D PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein; OsmC family protein 2671700..2672173 Acidovorax sp. JS42 4674451 YP_986746.1 CDS Ajs_2510 NC_008782.1 2672217 2673176 R PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding; GTP-binding protein, HSR1-like complement(2672217..2673176) Acidovorax sp. JS42 4674447 YP_986747.1 CDS Ajs_2511 NC_008782.1 2673233 2673454 D KEGG: pol:Bpro_3397 hypothetical protein; hypothetical protein 2673233..2673454 Acidovorax sp. JS42 4674365 YP_986748.1 CDS Ajs_2512 NC_008782.1 2673470 2673679 D KEGG: pol:Bpro_3398 hypothetical protein; hypothetical protein 2673470..2673679 Acidovorax sp. JS42 4674277 YP_986749.1 CDS Ajs_2513 NC_008782.1 2673752 2675512 R KEGG: mag:amb1833 Oxyanion-translocating ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase subunit ArsA complement(2673752..2675512) Acidovorax sp. JS42 4674264 YP_986750.1 CDS Ajs_2514 NC_008782.1 2675566 2675949 D SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein; ArsR family transcriptional regulator 2675566..2675949 Acidovorax sp. JS42 4674217 YP_986751.1 CDS Ajs_2515 NC_008782.1 2675972 2676457 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A1137 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2675972..2676457 Acidovorax sp. JS42 4674154 YP_986752.1 CDS Ajs_2516 NC_008782.1 2676475 2676972 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase; protein tyrosine phosphatase 2676475..2676972 Acidovorax sp. JS42 4674172 YP_986753.1 CDS Ajs_2517 NC_008782.1 2676974 2678056 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_0700 bile acid:sodium symporter; arsenical-resistance protein 2676974..2678056 Acidovorax sp. JS42 4673694 YP_986754.1 CDS Ajs_2518 NC_008782.1 2678046 2679239 D PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP1682 hypothetical protein; major facilitator superfamily transporter 2678046..2679239 Acidovorax sp. JS42 4673633 YP_986755.1 CDS Ajs_2519 NC_008782.1 2679286 2680203 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0879 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2679286..2680203) Acidovorax sp. JS42 4673290 YP_986756.1 CDS Ajs_2520 NC_008782.1 2680417 2682114 D catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; thiamine pyrophosphate protein 2680417..2682114 Acidovorax sp. JS42 4673585 YP_986757.1 CDS Ajs_2521 NC_008782.1 2682284 2683816 R TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional; glutamate-cysteine ligase complement(2682284..2683816) Acidovorax sp. JS42 4673272 YP_986758.1 CDS Ajs_2522 NC_008782.1 2683989 2684900 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_C7556 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2683989..2684900) Acidovorax sp. JS42 4673268 YP_986759.1 CDS ligD NC_008782.1 2685104 2687617 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(2685104..2687617) Acidovorax sp. JS42 4673244 YP_986760.1 CDS Ajs_2524 NC_008782.1 2687648 2688691 R PFAM: Ku domain protein; KEGG: nmu:Nmul_A1176 Ku; Ku domain-containing protein complement(2687648..2688691) Acidovorax sp. JS42 4673243 YP_986761.1 CDS Ajs_2525 NC_008782.1 2689273 2689470 R KEGG: net:Neut_2266 conserved hypothetical protein; hypothetical protein complement(2689273..2689470) Acidovorax sp. JS42 4673393 YP_986762.1 CDS Ajs_2526 NC_008782.1 2689533 2690708 R PFAM: AAA-4 family protein; KEGG: xcv:XCV2169 ATP-dependent DNA helicase; putative transcriptional regulator complement(2689533..2690708) Acidovorax sp. JS42 4673227 YP_986763.1 CDS Ajs_2527 NC_008782.1 2690690 2693359 R KEGG: xcv:XCV2168 hypothetical protein; hypothetical protein complement(2690690..2693359) Acidovorax sp. JS42 4673364 YP_986764.1 CDS Ajs_2528 NC_008782.1 2693356 2694567 R KEGG: xcv:XCV2167 hypothetical protein; hypothetical protein complement(2693356..2694567) Acidovorax sp. JS42 4673344 YP_986765.1 CDS Ajs_2529 NC_008782.1 2694560 2696614 R KEGG: xcv:XCV2166 hypothetical protein; hypothetical protein complement(2694560..2696614) Acidovorax sp. JS42 4672730 YP_986766.1 CDS Ajs_2530 NC_008782.1 2696611 2699397 R KEGG: xcv:XCV2165 putative DNA methylase; putative DNA methylase complement(2696611..2699397) Acidovorax sp. JS42 4672728 YP_986767.1 CDS Ajs_2531 NC_008782.1 2699456 2699656 R TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: pau:PA14_15570 hypothetical protein; phage transcriptional regulator AlpA complement(2699456..2699656) Acidovorax sp. JS42 4672915 YP_986768.1 CDS Ajs_2534 NC_008782.1 2700955 2701185 R KEGG: xcv:XCV2162 hypothetical protein; hypothetical protein complement(2700955..2701185) Acidovorax sp. JS42 4672686 YP_986769.1 CDS Ajs_2535 NC_008782.1 2701248 2701526 R hypothetical protein complement(2701248..2701526) Acidovorax sp. JS42 4672673 YP_986770.1 CDS Ajs_2536 NC_008782.1 2701523 2703121 R PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pau:PA14_15540 putative mating pair formation protein TrbL; TrbL/VirB6 plasmid conjugal transfer protein complement(2701523..2703121) Acidovorax sp. JS42 4672668 YP_986771.1 CDS Ajs_2537 NC_008782.1 2703118 2703387 R KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK; putative entry/exclusion protein TrbK complement(2703118..2703387) Acidovorax sp. JS42 4672581 YP_986772.1 CDS Ajs_2538 NC_008782.1 2703403 2704188 R KEGG: pau:PA14_15520 mating pair formation protein TrbJ; conjugal transfer protein TrbJ complement(2703403..2704188) Acidovorax sp. JS42 4672338 YP_986773.1 CDS Ajs_2539 NC_008782.1 2704430 2704801 R KEGG: pau:PA14_15510 OriT-binding protein, TraJ; conjugal transfer relaxosome component TraJ complement(2704430..2704801) Acidovorax sp. JS42 4672018 YP_986774.1 CDS Ajs_2540 NC_008782.1 2705121 2705399 R KEGG: pau:PA14_15500 possible OriT-binding protein, TraK; putative OriT-binding protein, TraK complement(2705121..2705399) Acidovorax sp. JS42 4672240 YP_986775.1 CDS Ajs_2541 NC_008782.1 2706113 2706982 R PFAM: replication C family protein; KEGG: pau:PA14_15400 putative replication protein, RepC; plasmid and phage iteron-binding protein complement(2706113..2706982) Acidovorax sp. JS42 4672146 YP_986776.1 CDS Ajs_2542 NC_008782.1 2706972 2707850 R KEGG: xcv:XCV2481 replication protein A; replication protein A complement(2706972..2707850) Acidovorax sp. JS42 4671970 YP_986777.1 CDS Ajs_2543 NC_008782.1 2707854 2708108 R KEGG: abo:ABO_2067 hypothetical protein; hypothetical protein complement(2707854..2708108) Acidovorax sp. JS42 4672108 YP_986778.1 CDS Ajs_2544 NC_008782.1 2708170 2709159 D KEGG: pau:PA14_15360 hypothetical protein; hypothetical protein 2708170..2709159 Acidovorax sp. JS42 4671500 YP_986779.1 CDS Ajs_2545 NC_008782.1 2709239 2709484 D PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2483 putative regulatory protein, AlpA family; phage transcriptional regulator AlpA 2709239..2709484 Acidovorax sp. JS42 4671494 YP_986780.1 CDS Ajs_2546 NC_008782.1 2709576 2710778 R PFAM: phage integrase family protein; KEGG: xcv:XCV2484 phage-related integrase; phage integrase family protein complement(2709576..2710778) Acidovorax sp. JS42 4671703 YP_986781.1 CDS guaA NC_008782.1 2711086 2712702 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2711086..2712702) Acidovorax sp. JS42 4671463 YP_986782.1 CDS Ajs_2548 NC_008782.1 2712780 2714255 R KEGG: rfr:Rfer_2288 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD; inosine-5'-monophosphate dehydrogenase complement(2712780..2714255) Acidovorax sp. JS42 4671629 YP_986783.1 CDS Ajs_2549 NC_008782.1 2714256 2714858 D KEGG: pol:Bpro_2439 hypothetical protein; hypothetical protein 2714256..2714858 Acidovorax sp. JS42 4671410 YP_986784.1 CDS Ajs_2550 NC_008782.1 2714944 2715288 R PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125; hypothetical protein complement(2714944..2715288) Acidovorax sp. JS42 4671403 YP_986785.1 CDS Ajs_2551 NC_008782.1 2715281 2715721 R PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase; cyclase/dehydrase complement(2715281..2715721) Acidovorax sp. JS42 4671326 YP_986786.1 CDS smpB NC_008782.1 2715836 2716309 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2715836..2716309 Acidovorax sp. JS42 4671518 YP_986787.1 CDS Ajs_2553 NC_008782.1 2716408 2716773 D PFAM: Secreted repeat of unknown function; KEGG: rfr:Rfer_2547 secreted repeat of unknown function; hypothetical protein 2716408..2716773 Acidovorax sp. JS42 4671003 YP_986788.1 CDS Ajs_2554 NC_008782.1 2716790 2717305 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_2548 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 2716790..2717305 Acidovorax sp. JS42 4670971 YP_986789.1 CDS Ajs_2555 NC_008782.1 2717336 2718175 D KEGG: rfr:Rfer_2549 putative transmembrane transcriptional regulator; putative transmembrane anti-sigma factor 2717336..2718175 Acidovorax sp. JS42 4670536 YP_986790.1 CDS Ajs_2556 NC_008782.1 2718126 2719217 R catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase complement(2718126..2719217) Acidovorax sp. JS42 4670910 YP_986791.1 CDS Ajs_2557 NC_008782.1 2719214 2720098 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_2138 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2719214..2720098) Acidovorax sp. JS42 4670886 YP_986792.1 CDS Ajs_2558 NC_008782.1 2720307 2722136 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pol:Bpro_2429 GTP-binding protein TypA; GTP-binding protein TypA complement(2720307..2722136) Acidovorax sp. JS42 4670851 YP_986793.1 CDS truB NC_008782.1 2722133 2723134 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2722133..2723134) Acidovorax sp. JS42 4670518 YP_986794.1 CDS rbfA NC_008782.1 2723131 2723508 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2723131..2723508) Acidovorax sp. JS42 4670515 YP_986795.1 CDS infB NC_008782.1 2723521 2726352 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2723521..2726352) Acidovorax sp. JS42 4670701 YP_986796.1 CDS Ajs_2562 NC_008782.1 2726377 2727861 R KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor complement(2726377..2727861) Acidovorax sp. JS42 4670647 YP_986797.1 CDS Ajs_2563 NC_008782.1 2727931 2728590 R PFAM: protein of unknown function DUF150; KEGG: rfr:Rfer_2132 protein of unknown function DUF150; hypothetical protein complement(2727931..2728590) Acidovorax sp. JS42 4674687 YP_986798.1 CDS Ajs_2564 NC_008782.1 2728717 2729106 R KEGG: pol:Bpro_1834 hypothetical protein; hypothetical protein complement(2728717..2729106) Acidovorax sp. JS42 4674086 YP_986799.1 CDS Ajs_2565 NC_008782.1 2729117 2730391 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I; class I cytochrome c complement(2729117..2730391) Acidovorax sp. JS42 4671244 YP_986800.1 CDS Ajs_2566 NC_008782.1 2730388 2731074 R KEGG: bbr:BB4510 probable cytochrome c; putative cytochrome c complement(2730388..2731074) Acidovorax sp. JS42 4670685 YP_986801.1 CDS Ajs_2567 NC_008782.1 2731118 2731873 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1977 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2731118..2731873) Acidovorax sp. JS42 4670756 YP_986802.1 CDS Ajs_2568 NC_008782.1 2731915 2734209 R KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R complement(2731915..2734209) Acidovorax sp. JS42 4670866 YP_986803.1 CDS Ajs_2569 NC_008782.1 2734697 2735071 D hypothetical protein 2734697..2735071 Acidovorax sp. JS42 4671097 YP_986804.1 CDS Ajs_2570 NC_008782.1 2735129 2735911 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2735129..2735911) Acidovorax sp. JS42 4671156 YP_986805.1 CDS rnhB NC_008782.1 2735942 2736571 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2735942..2736571) Acidovorax sp. JS42 4671871 YP_986806.1 CDS lpxB NC_008782.1 2736546 2737703 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2736546..2737703) Acidovorax sp. JS42 4671301 YP_986807.1 CDS Ajs_2573 NC_008782.1 2737719 2738510 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2737719..2738510) Acidovorax sp. JS42 4671616 YP_986808.1 CDS fabZ NC_008782.1 2738528 2738968 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2738528..2738968) Acidovorax sp. JS42 4671782 YP_986809.1 CDS lpxD NC_008782.1 2738984 2739964 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2738984..2739964) Acidovorax sp. JS42 4671797 YP_986810.1 CDS Ajs_2576 NC_008782.1 2739989 2740510 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(2739989..2740510) Acidovorax sp. JS42 4671834 YP_986811.1 CDS Ajs_2577 NC_008782.1 2740510 2742807 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15); surface antigen (D15) complement(2740510..2742807) Acidovorax sp. JS42 4674350 YP_986812.1 CDS Ajs_2578 NC_008782.1 2742853 2744217 R TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase; peptidase RseP complement(2742853..2744217) Acidovorax sp. JS42 4674250 YP_986813.1 CDS Ajs_2579 NC_008782.1 2744337 2745509 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2744337..2745509) Acidovorax sp. JS42 4674085 YP_986814.1 CDS Ajs_2580 NC_008782.1 2745506 2746360 R PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(2745506..2746360) Acidovorax sp. JS42 4672273 YP_986815.1 CDS Ajs_2581 NC_008782.1 2746395 2747129 R KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(2746395..2747129) Acidovorax sp. JS42 4672325 YP_986816.1 CDS frr NC_008782.1 2747158 2747718 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2747158..2747718) Acidovorax sp. JS42 4672463 YP_986817.1 CDS pyrH NC_008782.1 2747767 2748489 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2747767..2748489) Acidovorax sp. JS42 4674304 YP_986818.1 CDS tsf NC_008782.1 2748547 2749443 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2748547..2749443) Acidovorax sp. JS42 4674423 YP_986819.1 CDS rpsB NC_008782.1 2749553 2750305 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2749553..2750305) Acidovorax sp. JS42 4672918 YP_986820.1 CDS Ajs_2586 NC_008782.1 2750506 2751852 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 2750506..2751852 Acidovorax sp. JS42 4672960 YP_986821.1 CDS Ajs_2587 NC_008782.1 2751904 2753151 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase; D-amino-acid dehydrogenase 2751904..2753151 Acidovorax sp. JS42 4672982 YP_986822.1 CDS Ajs_2588 NC_008782.1 2753452 2754978 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: rfr:Rfer_1984 protein of unknown function UPF0031; carbohydrate kinase 2753452..2754978 Acidovorax sp. JS42 4672995 YP_986823.1 CDS Ajs_2589 NC_008782.1 2755155 2755328 D hypothetical protein 2755155..2755328 Acidovorax sp. JS42 4672996 YP_986824.1 CDS Ajs_2590 NC_008782.1 2755395 2756075 R KEGG: pol:Bpro_2657 hypothetical protein; hypothetical protein complement(2755395..2756075) Acidovorax sp. JS42 4673019 YP_986825.1 CDS Ajs_2591 NC_008782.1 2756072 2757082 R PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component; hypothetical protein complement(2756072..2757082) Acidovorax sp. JS42 4673039 YP_986826.1 CDS Ajs_2592 NC_008782.1 2757098 2757907 R KEGG: pol:Bpro_2659 ABC-type transport system ipermease component; ABC-type transport system permease complement(2757098..2757907) Acidovorax sp. JS42 4673049 YP_986827.1 CDS Ajs_2593 NC_008782.1 2758017 2758475 R PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(2758017..2758475) Acidovorax sp. JS42 4673071 YP_986828.1 CDS Ajs_2594 NC_008782.1 2758516 2760537 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2758516..2760537 Acidovorax sp. JS42 4673085 YP_986829.1 CDS Ajs_2595 NC_008782.1 2760534 2760953 D KEGG: sal:Sala_2445 hypothetical protein; hypothetical protein 2760534..2760953 Acidovorax sp. JS42 4674700 YP_986830.1 CDS Ajs_2596 NC_008782.1 2761101 2761727 D PFAM: protein of unknown function DUF161; KEGG: sme:SMc02240 hypothetical protein; hypothetical protein 2761101..2761727 Acidovorax sp. JS42 4674403 YP_986831.1 CDS Ajs_2597 NC_008782.1 2761803 2762204 D KEGG: pol:Bpro_3482 hypothetical protein; hypothetical protein 2761803..2762204 Acidovorax sp. JS42 4673474 YP_986832.1 CDS Ajs_2598 NC_008782.1 2762308 2762655 D hypothetical protein 2762308..2762655 Acidovorax sp. JS42 4673598 YP_986833.1 CDS Ajs_2599 NC_008782.1 2762652 2764085 D KEGG: bpm:BURPS1710b_A2008 copper tolerance protein; copper tolerance protein 2762652..2764085 Acidovorax sp. JS42 4673764 YP_986834.1 CDS Ajs_2600 NC_008782.1 2764087 2765475 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 2764087..2765475 Acidovorax sp. JS42 4673770 YP_986835.1 CDS Ajs_2601 NC_008782.1 2765493 2765975 D PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase; blue (type1) copper domain-containing protein 2765493..2765975 Acidovorax sp. JS42 4673776 YP_986836.1 CDS Ajs_2602 NC_008782.1 2766010 2766504 D PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411; hypothetical protein 2766010..2766504 Acidovorax sp. JS42 4673801 YP_986837.1 CDS Ajs_2603 NC_008782.1 2766501 2766911 D KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein 2766501..2766911 Acidovorax sp. JS42 4673906 YP_986838.1 CDS Ajs_2604 NC_008782.1 2766967 2769174 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2766967..2769174 Acidovorax sp. JS42 4673967 YP_986839.1 CDS Ajs_2605 NC_008782.1 2769230 2770243 D PFAM: peptidase S58, DmpA; KEGG: bmb:BruAb2_0832 hypothetical protein; peptidase S58, DmpA 2769230..2770243 Acidovorax sp. JS42 4673972 YP_986840.1 CDS Ajs_2606 NC_008782.1 2770246 2771583 D KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 2770246..2771583 Acidovorax sp. JS42 4673973 YP_986841.1 CDS Ajs_2607 NC_008782.1 2771613 2773838 R KEGG: rfr:Rfer_2170 hypothetical protein; hypothetical protein complement(2771613..2773838) Acidovorax sp. JS42 4673893 YP_986842.1 CDS Ajs_2608 NC_008782.1 2773896 2775635 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(2773896..2775635) Acidovorax sp. JS42 4674139 YP_986843.1 CDS Ajs_2609 NC_008782.1 2775814 2777547 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_2169 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein 2775814..2777547 Acidovorax sp. JS42 4674151 YP_986844.1 CDS Ajs_2610 NC_008782.1 2777684 2779504 D PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 2777684..2779504 Acidovorax sp. JS42 4674145 YP_986845.1 CDS Ajs_2611 NC_008782.1 2779968 2780519 R PFAM: Integrase, catalytic region; KEGG: bpm:BURPS1710b_A1950 integrase core domain protein; integrase catalytic subunit complement(2779968..2780519) Acidovorax sp. JS42 4674126 YP_986846.1 CDS Ajs_2613 NC_008782.1 2781490 2782569 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(2781490..2782569) Acidovorax sp. JS42 4670588 YP_986847.1 CDS Ajs_2614 NC_008782.1 2784111 2784569 R KEGG: eba:ebD99 hypothetical protein; hypothetical protein complement(2784111..2784569) Acidovorax sp. JS42 4674084 YP_986848.1 CDS Ajs_2615 NC_008782.1 2784562 2785149 R PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebA5860 predicted ArsR subfamily of helix-turn-helix bacterial transcription regulatory protein; DNA polymerase subunit beta complement(2784562..2785149) Acidovorax sp. JS42 4674053 YP_986849.1 CDS Ajs_2616 NC_008782.1 2785296 2786774 R PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: shm:Shewmr7_2863 N-6 DNA methylase; N-6 DNA methylase complement(2785296..2786774) Acidovorax sp. JS42 4674022 YP_986850.1 CDS Ajs_2617 NC_008782.1 2786847 2787404 R hypothetical protein complement(2786847..2787404) Acidovorax sp. JS42 4674010 YP_986851.1 CDS Ajs_2618 NC_008782.1 2787465 2789918 R PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like; EcoEI R domain-containing protein complement(2787465..2789918) Acidovorax sp. JS42 4674049 YP_986852.1 CDS Ajs_2619 NC_008782.1 2790069 2790593 D hypothetical protein 2790069..2790593 Acidovorax sp. JS42 4674042 YP_986853.1 CDS Ajs_2620 NC_008782.1 2791280 2793202 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2791280..2793202) Acidovorax sp. JS42 4674711 YP_986854.1 CDS Ajs_2621 NC_008782.1 2793352 2793624 R PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2793352..2793624) Acidovorax sp. JS42 4674696 YP_986855.1 CDS Ajs_2622 NC_008782.1 2794031 2794615 R KEGG: rfr:Rfer_2245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2794031..2794615) Acidovorax sp. JS42 4674690 YP_986856.1 CDS uvrC NC_008782.1 2794646 2796619 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2794646..2796619) Acidovorax sp. JS42 4674686 YP_986857.1 CDS Ajs_2624 NC_008782.1 2796720 2797421 R KEGG: pol:Bpro_2033 hypothetical protein; hypothetical protein complement(2796720..2797421) Acidovorax sp. JS42 4674701 YP_986858.1 CDS Ajs_2625 NC_008782.1 2797589 2798791 D PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase; phage integrase family protein 2797589..2798791 Acidovorax sp. JS42 4674688 YP_986859.1 CDS Ajs_2626 NC_008782.1 2798931 2799314 D PFAM: protein of unknown function DUF1044; KEGG: rru:Rru_A0922 protein of unknown function DUF1044; hypothetical protein 2798931..2799314 Acidovorax sp. JS42 4674681 YP_986860.1 CDS Ajs_2627 NC_008782.1 2799298 2799600 D KEGG: pen:PSEEN2902 transcriptional regulator; transcriptional regulator 2799298..2799600 Acidovorax sp. JS42 4674664 YP_986861.1 CDS Ajs_2628 NC_008782.1 2799689 2800156 D KEGG: shm:Shewmr7_1033 hypothetical protein; hypothetical protein 2799689..2800156 Acidovorax sp. JS42 4674672 YP_986862.1 CDS Ajs_2629 NC_008782.1 2800156 2800782 D KEGG: rfr:Rfer_1064 hypothetical protein; hypothetical protein 2800156..2800782 Acidovorax sp. JS42 4674667 YP_986863.1 CDS Ajs_2630 NC_008782.1 2800786 2801922 D KEGG: shm:Shewmr7_1035 hypothetical protein; hypothetical protein 2800786..2801922 Acidovorax sp. JS42 4674654 YP_986864.1 CDS Ajs_2631 NC_008782.1 2801919 2802581 D KEGG: shm:Shewmr7_1036 hypothetical protein; hypothetical protein 2801919..2802581 Acidovorax sp. JS42 4674659 YP_986865.1 CDS Ajs_2632 NC_008782.1 2802598 2803083 R KEGG: neu:NE2099 hypothetical protein; hypothetical protein complement(2802598..2803083) Acidovorax sp. JS42 4674646 YP_986866.1 CDS Ajs_2633 NC_008782.1 2803140 2803388 D hypothetical protein 2803140..2803388 Acidovorax sp. JS42 4674637 YP_986867.1 CDS Ajs_2635 NC_008782.1 2803716 2804858 R KEGG: pca:Pcar_2916 hypothetical protein; hypothetical protein complement(2803716..2804858) Acidovorax sp. JS42 4674617 YP_986868.1 CDS Ajs_2636 NC_008782.1 2805271 2805777 D PFAM: DNA repair protein RadC; KEGG: pau:PA14_31260 RadC-like protein; DNA repair protein RadC 2805271..2805777 Acidovorax sp. JS42 4674137 YP_986869.1 CDS Ajs_2637 NC_008782.1 2805845 2808148 R KEGG: rso:RSc2619 hypothetical protein; hypothetical protein complement(2805845..2808148) Acidovorax sp. JS42 4674619 YP_986870.1 CDS Ajs_2638 NC_008782.1 2808132 2808416 R hypothetical protein complement(2808132..2808416) Acidovorax sp. JS42 4674618 YP_986871.1 CDS Ajs_2639 NC_008782.1 2808702 2809526 D PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1244 protein of unknown function DUF932; hypothetical protein 2808702..2809526 Acidovorax sp. JS42 4674598 YP_986872.1 CDS Ajs_2640 NC_008782.1 2809605 2811677 D PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1245 ParB-like nuclease; ParB family protein 2809605..2811677 Acidovorax sp. JS42 4674609 YP_986873.1 CDS Ajs_2644 NC_008782.1 2813197 2813550 D PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_1248 protein of unknown function DUF736; hypothetical protein 2813197..2813550 Acidovorax sp. JS42 4674582 YP_986874.1 CDS Ajs_2645 NC_008782.1 2813614 2813901 R PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1249 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2813614..2813901) Acidovorax sp. JS42 4674566 YP_986875.1 CDS Ajs_2646 NC_008782.1 2814071 2815564 R KEGG: mes:Meso_4392 hypothetical protein; hypothetical protein complement(2814071..2815564) Acidovorax sp. JS42 4674536 YP_986876.1 CDS Ajs_2647 NC_008782.1 2815561 2816457 R PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB; TniB family protein complement(2815561..2816457) Acidovorax sp. JS42 4674543 YP_986877.1 CDS Ajs_2648 NC_008782.1 2816454 2818124 R PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region; integrase catalytic subunit complement(2816454..2818124) Acidovorax sp. JS42 4674548 YP_986878.1 CDS Ajs_2649 NC_008782.1 2818121 2818738 R KEGG: mag:amb3764 hypothetical protein; hypothetical protein complement(2818121..2818738) Acidovorax sp. JS42 4674153 YP_986879.1 CDS Ajs_2650 NC_008782.1 2819034 2819384 D KEGG: rme:Rmet_1250 putative lipoprotein; putative lipoprotein 2819034..2819384 Acidovorax sp. JS42 4674538 YP_986880.1 CDS Ajs_2651 NC_008782.1 2819693 2820454 D KEGG: rme:Rmet_1252 hypothetical protein; hypothetical protein 2819693..2820454 Acidovorax sp. JS42 4674534 YP_986881.1 CDS Ajs_2652 NC_008782.1 2820538 2820819 D KEGG: rme:Rmet_1253 hypothetical protein; hypothetical protein 2820538..2820819 Acidovorax sp. JS42 4674520 YP_986882.1 CDS Ajs_2653 NC_008782.1 2820846 2821703 D KEGG: rme:Rmet_1485 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein 2820846..2821703 Acidovorax sp. JS42 4674526 YP_986883.1 CDS Ajs_2655 NC_008782.1 2821957 2822595 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc2605 putative partition protein; cobyrinic acid a,c-diamide synthase 2821957..2822595 Acidovorax sp. JS42 4674492 YP_986884.1 CDS Ajs_2656 NC_008782.1 2822592 2822879 D KEGG: rme:Rmet_1256 hypothetical protein; hypothetical protein 2822592..2822879 Acidovorax sp. JS42 4674491 YP_986885.1 CDS Ajs_2657 NC_008782.1 2822876 2823433 D KEGG: bam:Bamb_1987 hypothetical protein; hypothetical protein 2822876..2823433 Acidovorax sp. JS42 4674495 YP_986886.1 CDS Ajs_2658 NC_008782.1 2823430 2824029 D KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein; putative conjugal transfer TRAF transmembrane protein 2823430..2824029 Acidovorax sp. JS42 4674490 YP_986887.1 CDS Ajs_2660 NC_008782.1 2824828 2825799 R PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region; integrase catalytic subunit complement(2824828..2825799) Acidovorax sp. JS42 4674483 YP_986888.1 CDS Ajs_2662 NC_008782.1 2827602 2827952 R hypothetical protein complement(2827602..2827952) Acidovorax sp. JS42 4674470 YP_986889.1 CDS Ajs_2663 NC_008782.1 2828319 2829545 D PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type 2828319..2829545 Acidovorax sp. JS42 4674458 YP_986890.1 CDS Ajs_2667 NC_008782.1 2830473 2830814 R KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein complement(2830473..2830814) Acidovorax sp. JS42 4674416 YP_986891.1 CDS Ajs_2668 NC_008782.1 2830894 2831385 R PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein complement(2830894..2831385) Acidovorax sp. JS42 4674433 YP_986892.1 CDS Ajs_2669 NC_008782.1 2831419 2832750 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 complement(2831419..2832750) Acidovorax sp. JS42 4674390 YP_986893.1 CDS Ajs_2670 NC_008782.1 2832848 2834278 R KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-like lipoprotein complement(2832848..2834278) Acidovorax sp. JS42 4674397 YP_986894.1 CDS Ajs_2671 NC_008782.1 2834275 2834616 R KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein complement(2834275..2834616) Acidovorax sp. JS42 4674378 YP_986895.1 CDS Ajs_2673 NC_008782.1 2835350 2835658 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE 2835350..2835658 Acidovorax sp. JS42 4674363 YP_986896.1 CDS Ajs_2674 NC_008782.1 2835954 2837099 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: nwi:Nwi_1948 acetate kinase; acetate kinase 2835954..2837099 Acidovorax sp. JS42 4674007 YP_986897.1 CDS Ajs_2675 NC_008782.1 2837313 2837765 D PFAM: regulatory protein, MerR; KEGG: csa:Csal_3005 transcriptional regulator, MerR family; MerR family transcriptional regulator 2837313..2837765 Acidovorax sp. JS42 4674190 YP_986898.1 CDS Ajs_2676 NC_008782.1 2837816 2839273 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2187 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2837816..2839273 Acidovorax sp. JS42 4674331 YP_986899.1 CDS Ajs_2677 NC_008782.1 2839432 2839911 D KEGG: mmc:Mmcs_1460 hypothetical protein; hypothetical protein 2839432..2839911 Acidovorax sp. JS42 4674334 YP_986900.1 CDS Ajs_2678 NC_008782.1 2840018 2842438 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 2840018..2842438 Acidovorax sp. JS42 4670679 YP_986901.1 CDS Ajs_2679 NC_008782.1 2842544 2843806 D KEGG: rme:Rmet_6120 hypothetical protein; hypothetical protein 2842544..2843806 Acidovorax sp. JS42 4670763 YP_986902.1 CDS Ajs_2680 NC_008782.1 2843872 2844915 R catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; glyceraldehyde-3-phosphate dehydrogenase complement(2843872..2844915) Acidovorax sp. JS42 4670838 YP_986903.1 CDS Ajs_2681 NC_008782.1 2844943 2846562 R PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal; 2-octaprenylphenol hydroxylase complement(2844943..2846562) Acidovorax sp. JS42 4670863 YP_986904.1 CDS Ajs_2682 NC_008782.1 2846562 2847581 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2846562..2847581) Acidovorax sp. JS42 4670994 YP_986905.1 CDS Ajs_2683 NC_008782.1 2847578 2848240 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sal:Sala_2559 methyltransferase type 11; type 11 methyltransferase complement(2847578..2848240) Acidovorax sp. JS42 4671005 YP_986906.1 CDS Ajs_2685 NC_008782.1 2848570 2849658 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(2848570..2849658) Acidovorax sp. JS42 4671037 YP_986907.1 CDS Ajs_2686 NC_008782.1 2849730 2850206 R KEGG: pol:Bpro_1196 hypothetical protein; hypothetical protein complement(2849730..2850206) Acidovorax sp. JS42 4671122 YP_986908.1 CDS Ajs_2687 NC_008782.1 2850244 2850888 R hypothetical protein complement(2850244..2850888) Acidovorax sp. JS42 4671147 YP_986909.1 CDS Ajs_2688 NC_008782.1 2850895 2852070 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tbd:Tbd_1834 putative protease; peptidase S1 and S6, chymotrypsin/Hap complement(2850895..2852070) Acidovorax sp. JS42 4671158 YP_986910.1 CDS Ajs_2689 NC_008782.1 2852067 2852966 R Catalyzes the formation of PRPP from ATP and ribose 5-phosphate; phosphoribosylpyrophosphate synthetase complement(2852067..2852966) Acidovorax sp. JS42 4671175 YP_986911.1 CDS Ajs_2690 NC_008782.1 2852963 2854504 R catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine; thymidine phosphorylase complement(2852963..2854504) Acidovorax sp. JS42 4671304 YP_986912.1 CDS Ajs_2691 NC_008782.1 2854501 2855859 R PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like; beta-lactamase domain-containing protein complement(2854501..2855859) Acidovorax sp. JS42 4671289 YP_986913.1 CDS Ajs_2692 NC_008782.1 2855885 2856382 R PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477; hypothetical protein complement(2855885..2856382) Acidovorax sp. JS42 4671882 YP_986914.1 CDS Ajs_2693 NC_008782.1 2856384 2857289 R PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3401 protein of unknown function DUF477; hypothetical protein complement(2856384..2857289) Acidovorax sp. JS42 4671523 YP_986915.1 CDS Ajs_2694 NC_008782.1 2857291 2857902 R PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA; LemA family protein complement(2857291..2857902) Acidovorax sp. JS42 4671573 YP_986916.1 CDS Ajs_2695 NC_008782.1 2857899 2859212 R PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(2857899..2859212) Acidovorax sp. JS42 4671589 YP_986917.1 CDS Ajs_2696 NC_008782.1 2859232 2861610 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase; copper-translocating P-type ATPase complement(2859232..2861610) Acidovorax sp. JS42 4671605 YP_986918.1 CDS Ajs_2697 NC_008782.1 2861713 2862576 R PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344; hypothetical protein complement(2861713..2862576) Acidovorax sp. JS42 4671698 YP_986919.1 CDS Ajs_2698 NC_008782.1 2862937 2863371 R hypothetical protein complement(2862937..2863371) Acidovorax sp. JS42 4671725 YP_986920.1 CDS Ajs_2699 NC_008782.1 2863441 2863956 D PFAM: regulatory protein, MerR; KEGG: sme:SMa0281 putative regulator, MerR family; MerR family transcriptional regulator 2863441..2863956 Acidovorax sp. JS42 4671740 YP_986921.1 CDS Ajs_2700 NC_008782.1 2864249 2864599 D hypothetical protein 2864249..2864599 Acidovorax sp. JS42 4671762 YP_986922.1 CDS Ajs_2701 NC_008782.1 2864807 2865202 R hypothetical protein complement(2864807..2865202) Acidovorax sp. JS42 4671765 YP_986923.1 CDS Ajs_2702 NC_008782.1 2865240 2866991 R KEGG: eba:ebA6677 hypothetical protein; hypothetical protein complement(2865240..2866991) Acidovorax sp. JS42 4671777 YP_986924.1 CDS Ajs_2703 NC_008782.1 2866988 2870167 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; CzcA family heavy metal efflux protein complement(2866988..2870167) Acidovorax sp. JS42 4671791 YP_986925.1 CDS Ajs_2704 NC_008782.1 2870183 2871799 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2870183..2871799) Acidovorax sp. JS42 4671806 YP_986926.1 CDS Ajs_2705 NC_008782.1 2871796 2873070 R PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein; outer membrane efflux protein complement(2871796..2873070) Acidovorax sp. JS42 4672061 YP_986927.1 CDS Ajs_2706 NC_008782.1 2873067 2873315 R KEGG: reu:Reut_A1356 hypothetical protein; hypothetical protein complement(2873067..2873315) Acidovorax sp. JS42 4672082 YP_986928.1 CDS Ajs_2707 NC_008782.1 2873372 2874652 R KEGG: pol:Bpro_1182 membrane protein-like; membrane protein complement(2873372..2874652) Acidovorax sp. JS42 4671965 YP_986929.1 CDS Ajs_2708 NC_008782.1 2875120 2875425 R KEGG: eba:ebA3243 transposase, IS5 family; hypothetical protein complement(2875120..2875425) Acidovorax sp. JS42 4671968 YP_986930.1 CDS Ajs_2709 NC_008782.1 2875549 2877468 R KEGG: lpp:lpp2348 hypothetical protein; hypothetical protein complement(2875549..2877468) Acidovorax sp. JS42 4672136 YP_986931.1 CDS Ajs_2710 NC_008782.1 2877489 2879996 R KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; heavy metal translocating P-type ATPase complement(2877489..2879996) Acidovorax sp. JS42 4672235 YP_986932.1 CDS Ajs_2711 NC_008782.1 2880006 2880266 R KEGG: ana:asl7591 hypothetical protein; hypothetical protein complement(2880006..2880266) Acidovorax sp. JS42 4672264 YP_986933.1 CDS Ajs_2713 NC_008782.1 2880695 2881363 R KEGG: rfr:Rfer_0419 hypothetical protein; hypothetical protein complement(2880695..2881363) Acidovorax sp. JS42 4672271 YP_986934.1 CDS Ajs_2714 NC_008782.1 2881360 2881635 R KEGG: pol:Bpro_1175 hypothetical protein; hypothetical protein complement(2881360..2881635) Acidovorax sp. JS42 4672302 YP_986935.1 CDS Ajs_2715 NC_008782.1 2881646 2882134 R KEGG: ppu:PP_5391 hypothetical protein; hypothetical protein complement(2881646..2882134) Acidovorax sp. JS42 4672309 YP_986936.1 CDS Ajs_2717 NC_008782.1 2882730 2883017 R KEGG: dar:Daro_2282 hypothetical protein; hypothetical protein complement(2882730..2883017) Acidovorax sp. JS42 4672333 YP_986937.1 CDS Ajs_2718 NC_008782.1 2883245 2884237 R PFAM: transposase, IS4 family protein; KEGG: rso:RSp1136 ISRSO18-transposase protein; transposase, IS4 family protein complement(2883245..2884237) Acidovorax sp. JS42 4672348 YP_986938.1 CDS Ajs_2719 NC_008782.1 2884430 2884744 D hypothetical protein 2884430..2884744 Acidovorax sp. JS42 4672375 YP_986939.1 CDS Ajs_2720 NC_008782.1 2884919 2885260 R KEGG: pol:Bpro_3489 hypothetical protein; hypothetical protein complement(2884919..2885260) Acidovorax sp. JS42 4672394 YP_986940.1 CDS Ajs_2721 NC_008782.1 2885394 2885894 R PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain; blue (type1) copper domain-containing protein complement(2885394..2885894) Acidovorax sp. JS42 4672040 YP_986941.1 CDS Ajs_2722 NC_008782.1 2885928 2887340 R PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal; multicopper oxidase, type 3 complement(2885928..2887340) Acidovorax sp. JS42 4672493 YP_986942.1 CDS Ajs_2723 NC_008782.1 2887357 2888787 R KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein; putative copper resistance-like lipoprotein complement(2887357..2888787) Acidovorax sp. JS42 4674424 YP_986943.1 CDS Ajs_2724 NC_008782.1 2888784 2889080 R KEGG: pol:Bpro_3483 hypothetical protein; hypothetical protein complement(2888784..2889080) Acidovorax sp. JS42 4674407 YP_986944.1 CDS Ajs_2725 NC_008782.1 2889275 2889958 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family; two component heavy metal response transcriptional regulator 2889275..2889958 Acidovorax sp. JS42 4673111 YP_986945.1 CDS Ajs_2726 NC_008782.1 2889959 2891362 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase; heavy metal sensor signal transduction histidine kinase 2889959..2891362 Acidovorax sp. JS42 4672718 YP_986946.1 CDS Ajs_2727 NC_008782.1 2891434 2891862 D KEGG: bpe:BP0266 hypothetical protein; hypothetical protein 2891434..2891862 Acidovorax sp. JS42 4673180 YP_986947.1 CDS Ajs_2728 NC_008782.1 2892313 2892666 D hypothetical protein 2892313..2892666 Acidovorax sp. JS42 4673155 YP_986948.1 CDS Ajs_2730 NC_008782.1 2893073 2893597 D KEGG: spr:spr0717 transposase; hypothetical protein 2893073..2893597 Acidovorax sp. JS42 4672799 YP_986949.1 CDS Ajs_2731 NC_008782.1 2893620 2894138 D KEGG: spn:SP0811 transposase family protein; transposase family protein 2893620..2894138 Acidovorax sp. JS42 4672831 YP_986950.1 CDS Ajs_2733 NC_008782.1 2894631 2894987 D KEGG: bms:BRA0376 hypothetical protein; hypothetical protein 2894631..2894987 Acidovorax sp. JS42 4672853 YP_986951.1 CDS gltX NC_008782.1 2895585 2896994 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2895585..2896994) Acidovorax sp. JS42 4673089 YP_986952.1 CDS Ajs_2735 NC_008782.1 2896991 2898205 R KEGG: pol:Bpro_1608 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase complement(2896991..2898205) Acidovorax sp. JS42 4674682 YP_986953.1 CDS Ajs_2736 NC_008782.1 2898336 2899844 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2898336..2899844) Acidovorax sp. JS42 4670592 YP_986954.1 CDS Ajs_2737 NC_008782.1 2899922 2900410 R PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein; colicin V production protein complement(2899922..2900410) Acidovorax sp. JS42 4674027 YP_986955.1 CDS Ajs_2738 NC_008782.1 2900451 2901293 R PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related; sporulation domain-containing protein complement(2900451..2901293) Acidovorax sp. JS42 4674032 YP_986956.1 CDS Ajs_2739 NC_008782.1 2901308 2902633 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_2686 FolC bifunctional protein; FolC bifunctional protein complement(2901308..2902633) Acidovorax sp. JS42 4674036 YP_986957.1 CDS Ajs_2740 NC_008782.1 2902681 2903067 D PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein; arsenate reductase-like protein 2902681..2903067 Acidovorax sp. JS42 4673853 YP_986958.1 CDS Ajs_2741 NC_008782.1 2903180 2903860 D PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen; 17 kDa surface antigen 2903180..2903860 Acidovorax sp. JS42 4673962 YP_986959.1 CDS Ajs_2742 NC_008782.1 2904031 2904348 D PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein; hypothetical protein 2904031..2904348 Acidovorax sp. JS42 4673981 YP_986960.1 CDS Ajs_2743 NC_008782.1 2904415 2905761 D catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 2904415..2905761 Acidovorax sp. JS42 4673452 YP_986961.1 CDS Ajs_2744 NC_008782.1 2905852 2906571 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rpa:RPA2810 possible ExsB protein; exsB protein complement(2905852..2906571) Acidovorax sp. JS42 4673482 YP_986962.1 CDS Ajs_2745 NC_008782.1 2906568 2907236 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: pau:PA14_00140 hypothetical protein; hypothetical protein complement(2906568..2907236) Acidovorax sp. JS42 4673501 YP_986963.1 CDS Ajs_2746 NC_008782.1 2907560 2908447 D PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bps:BPSL1130 putative sigma factor; ECF subfamily RNA polymerase sigma-24 factor 2907560..2908447 Acidovorax sp. JS42 4673597 YP_986964.1 CDS Ajs_2747 NC_008782.1 2908523 2908978 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ade:Adeh_3128 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 2908523..2908978 Acidovorax sp. JS42 4673713 YP_986965.1 CDS Ajs_2748 NC_008782.1 2909268 2910704 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: mag:amb4305 di- and tricarboxylate transporters; anion transporter 2909268..2910704 Acidovorax sp. JS42 4673716 YP_986966.1 CDS Ajs_2749 NC_008782.1 2910810 2911886 R KEGG: rfr:Rfer_2691 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylmuramate dehydrogenase complement(2910810..2911886) Acidovorax sp. JS42 4673721 YP_986967.1 CDS Ajs_2750 NC_008782.1 2911954 2912439 D putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 2911954..2912439 Acidovorax sp. JS42 4673757 YP_986968.1 CDS Ajs_2751 NC_008782.1 2912456 2913100 D KEGG: pol:Bpro_1595 hypothetical protein; hypothetical protein 2912456..2913100 Acidovorax sp. JS42 4673785 YP_986969.1 CDS Ajs_2752 NC_008782.1 2913123 2914124 D KEGG: rfr:Rfer_2693 HD-GYP domain-like; putative metal dependent phosphohydrolase 2913123..2914124 Acidovorax sp. JS42 4673312 YP_986970.1 CDS Ajs_2753 NC_008782.1 2914203 2914823 R PFAM: protein of unknown function DUF205; KEGG: rfr:Rfer_2695 protein of unknown function DUF205; acyl-phosphate glycerol-3-phosphate acyltransferase complement(2914203..2914823) Acidovorax sp. JS42 4673800 YP_986971.1 CDS Ajs_2754 NC_008782.1 2914884 2915384 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein; ybaK/ebsC protein complement(2914884..2915384) Acidovorax sp. JS42 4673804 YP_986972.1 CDS Ajs_2755 NC_008782.1 2915450 2916511 R PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase; aldo/keto reductase complement(2915450..2916511) Acidovorax sp. JS42 4673809 YP_986973.1 CDS Ajs_2756 NC_008782.1 2916640 2917575 D PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2916640..2917575 Acidovorax sp. JS42 4673825 YP_986974.1 CDS Ajs_2757 NC_008782.1 2917784 2918791 D TIGRFAM: diaminopimelate dehydrogenase; KEGG: dsy:DSY0242 hypothetical protein; diaminopimelate dehydrogenase 2917784..2918791 Acidovorax sp. JS42 4673317 YP_986975.1 CDS Ajs_2758 NC_008782.1 2918979 2920083 D peptide chain release factor 2 join(2918979..2919059,2919061..2920083) Acidovorax sp. JS42 4673903 YP_986976.1 CDS pepN NC_008782.1 2920129 2922831 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase; aminopeptidase N 2920129..2922831 Acidovorax sp. JS42 4674114 YP_986977.1 CDS Ajs_2760 NC_008782.1 2922843 2923862 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2922843..2923862 Acidovorax sp. JS42 4674105 YP_986978.1 CDS Ajs_2761 NC_008782.1 2924184 2925164 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 2924184..2925164 Acidovorax sp. JS42 4674071 YP_986979.1 CDS Ajs_2762 NC_008782.1 2925274 2927643 R PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase; ornithine decarboxylase complement(2925274..2927643) Acidovorax sp. JS42 4674064 YP_986980.1 CDS Ajs_2763 NC_008782.1 2927812 2928243 D KEGG: pol:Bpro_2414 protein of unknown function DUF107; hypothetical protein 2927812..2928243 Acidovorax sp. JS42 4674044 YP_986981.1 CDS Ajs_2764 NC_008782.1 2928322 2929236 D PFAM: band 7 protein; KEGG: rfr:Rfer_2124 band 7 protein; SPFH domain-containing protein 2928322..2929236 Acidovorax sp. JS42 4673326 YP_986982.1 CDS Ajs_2765 NC_008782.1 2929318 2929611 D PFAM: ferredoxin; KEGG: rfr:Rfer_1389 ferredoxin; ferredoxin 2929318..2929611 Acidovorax sp. JS42 4674712 YP_986983.1 CDS Ajs_2766 NC_008782.1 2929870 2930991 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2929870..2930991 Acidovorax sp. JS42 4674721 YP_986984.1 CDS ribH NC_008782.1 2930995 2931459 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2930995..2931459 Acidovorax sp. JS42 4674703 YP_986985.1 CDS Ajs_2768 NC_008782.1 2931456 2931989 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rfr:Rfer_2670 NusB antitermination factor; NusB antitermination factor 2931456..2931989 Acidovorax sp. JS42 4674683 YP_986986.1 CDS Ajs_2769 NC_008782.1 2932083 2933267 D PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II; aminotransferase 2932083..2933267 Acidovorax sp. JS42 4674680 YP_986987.1 CDS Ajs_2770 NC_008782.1 2933287 2933712 D TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase 2933287..2933712 Acidovorax sp. JS42 4674674 YP_986988.1 CDS Ajs_2771 NC_008782.1 2933709 2934410 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2933709..2934410 Acidovorax sp. JS42 4674648 YP_986989.1 CDS Ajs_2772 NC_008782.1 2934590 2935015 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_2673 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 2934590..2935015 Acidovorax sp. JS42 4674630 YP_986990.1 CDS Ajs_2773 NC_008782.1 2935037 2936008 D TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: rfr:Rfer_1159 TonB-like; TonB family protein 2935037..2936008 Acidovorax sp. JS42 4674627 YP_986991.1 CDS Ajs_2774 NC_008782.1 2936131 2937462 R PFAM: General substrate transporter; KEGG: bpe:BP2732 putative membrane transport protein; general substrate transporter complement(2936131..2937462) Acidovorax sp. JS42 4674626 YP_986992.1 CDS Ajs_2775 NC_008782.1 2937774 2938823 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: sme:SMb21487 putative cytochrome o ubiquinol oxidase chain II protein; ubiquinol oxidase subunit II 2937774..2938823 Acidovorax sp. JS42 4674606 YP_986993.1 CDS Ajs_2776 NC_008782.1 2938951 2940891 D PFAM: cytochrome c oxidase, subunit I; KEGG: atc:AGR_C_227 ba-type ubiquinol oxidase chain I; cytochrome-c oxidase 2938951..2940891 Acidovorax sp. JS42 4674616 YP_986994.1 CDS Ajs_2777 NC_008782.1 2940884 2941519 D PFAM: cytochrome c oxidase, subunit III; KEGG: atc:AGR_C_225 bo-type ubiquinol oxidase chain III; cytochrome c oxidase subunit III 2940884..2941519 Acidovorax sp. JS42 4674604 YP_986995.1 CDS Ajs_2778 NC_008782.1 2941520 2941948 D PFAM: cytochrome C oxidase subunit IV; KEGG: reu:Reut_B4893 prokaryotic cytochrome c oxidase subunit IV; cytochrome C oxidase subunit IV 2941520..2941948 Acidovorax sp. JS42 4674587 YP_986996.1 CDS Ajs_2779 NC_008782.1 2941960 2942769 D PFAM: Surfeit locus 1 family protein; KEGG: bpa:BPP1090 exported SurF1-family protein; Surfeit locus 1 family protein 2941960..2942769 Acidovorax sp. JS42 4674570 YP_986997.1 CDS Ajs_2780 NC_008782.1 2942766 2944106 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_2032 two-component, sensor histidine protein kinase, putative; integral membrane sensor signal transduction histidine kinase 2942766..2944106 Acidovorax sp. JS42 4674574 YP_986998.1 CDS Ajs_2781 NC_008782.1 2944096 2944629 D PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: abo:ABO_2031 response regulator; two component Fis family transcriptional regulator 2944096..2944629 Acidovorax sp. JS42 4674041 YP_986999.1 CDS Ajs_2782 NC_008782.1 2944741 2945169 D KEGG: bja:blr1415 hypothetical glutathione S-transferase like protein; glutathione S-transferase-like protein 2944741..2945169 Acidovorax sp. JS42 4674547 YP_987000.1 CDS Ajs_2783 NC_008782.1 2945705 2947081 D PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease; peptidase U32 2945705..2947081 Acidovorax sp. JS42 4674508 YP_987001.1 CDS Ajs_2784 NC_008782.1 2947137 2948114 D KEGG: xac:XAC2490 hypothetical protein; hypothetical protein 2947137..2948114 Acidovorax sp. JS42 4674487 YP_987002.1 CDS Ajs_2785 NC_008782.1 2948122 2948553 R KEGG: rpa:RPA3870 hypothetical protein; hypothetical protein complement(2948122..2948553) Acidovorax sp. JS42 4674474 YP_987003.1 CDS Ajs_2786 NC_008782.1 2948659 2949474 D PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_3594 transcriptional regulator, XRE family; XRE family transcriptional regulator 2948659..2949474 Acidovorax sp. JS42 4674477 YP_987004.1 CDS Ajs_2787 NC_008782.1 2949694 2952285 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(2949694..2952285) Acidovorax sp. JS42 4674450 YP_987005.1 CDS Ajs_2788 NC_008782.1 2952400 2953020 R KEGG: pol:Bpro_3596 hypothetical protein; hypothetical protein complement(2952400..2953020) Acidovorax sp. JS42 4674464 YP_987006.1 CDS Ajs_2789 NC_008782.1 2953080 2954090 R PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(2953080..2954090) Acidovorax sp. JS42 4674455 YP_987007.1 CDS Ajs_2790 NC_008782.1 2954087 2954863 R catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase complement(2954087..2954863) Acidovorax sp. JS42 4674380 YP_987008.1 CDS Ajs_2791 NC_008782.1 2954876 2955928 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(2954876..2955928) Acidovorax sp. JS42 4674373 YP_987009.1 CDS Ajs_2792 NC_008782.1 2955998 2956852 D PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family; GntR family transcriptional regulator 2955998..2956852 Acidovorax sp. JS42 4674367 YP_987010.1 CDS Ajs_2793 NC_008782.1 2956992 2957426 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase subunit C 2956992..2957426 Acidovorax sp. JS42 4674370 YP_987011.1 CDS Ajs_2794 NC_008782.1 2957470 2957835 D KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase subunit D 2957470..2957835 Acidovorax sp. JS42 4674345 YP_987012.1 CDS Ajs_2795 NC_008782.1 2957858 2959663 D KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase subunit A 2957858..2959663 Acidovorax sp. JS42 4674335 YP_987013.1 CDS Ajs_2796 NC_008782.1 2959694 2960398 D KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase subunit B 2959694..2960398 Acidovorax sp. JS42 4674355 YP_987014.1 CDS Ajs_2797 NC_008782.1 2960404 2960676 D PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339; hypothetical protein 2960404..2960676 Acidovorax sp. JS42 4674346 YP_987015.1 CDS gltA NC_008782.1 2960719 2962029 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2960719..2962029 Acidovorax sp. JS42 4674132 YP_987016.1 CDS Ajs_2799 NC_008782.1 2962344 2962610 D PFAM: protein of unknown function DUF156; KEGG: bms:BR0131 hypothetical protein; hypothetical protein 2962344..2962610 Acidovorax sp. JS42 4674321 YP_987017.1 CDS Ajs_2800 NC_008782.1 2962646 2963761 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6311 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2962646..2963761 Acidovorax sp. JS42 4674102 YP_987018.1 CDS Ajs_2801 NC_008782.1 2963868 2964752 D PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase; carboxylesterase 2963868..2964752 Acidovorax sp. JS42 4674289 YP_987019.1 CDS Ajs_2802 NC_008782.1 2964943 2965242 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mlo:mll2956 hypothetical protein; antibiotic biosynthesis monooxygenase complement(2964943..2965242) Acidovorax sp. JS42 4674299 YP_987020.1 CDS Ajs_2803 NC_008782.1 2965298 2966506 R PFAM: Radical SAM domain protein; KEGG: pol:Bpro_3135 radical SAM; radical SAM domain-containing protein complement(2965298..2966506) Acidovorax sp. JS42 4674135 YP_987021.1 CDS Ajs_2804 NC_008782.1 2966520 2967521 R KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein complement(2966520..2967521) Acidovorax sp. JS42 4674272 YP_987022.1 CDS Ajs_2805 NC_008782.1 2967830 2968237 D PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor; GreA/GreB family elongation factor 2967830..2968237 Acidovorax sp. JS42 4674253 YP_987023.1 CDS Ajs_2806 NC_008782.1 2968291 2969454 R PFAM: acyltransferase 3; KEGG: pol:Bpro_3139 acyltransferase 3; acyltransferase 3 complement(2968291..2969454) Acidovorax sp. JS42 4674119 YP_987024.1 CDS Ajs_2807 NC_008782.1 2969641 2970597 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(2969641..2970597) Acidovorax sp. JS42 4674237 YP_987025.1 CDS Ajs_2808 NC_008782.1 2970676 2972466 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(2970676..2972466) Acidovorax sp. JS42 4674060 YP_987026.1 CDS Ajs_2809 NC_008782.1 2972548 2973480 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha complement(2972548..2973480) Acidovorax sp. JS42 4674236 YP_987027.1 CDS Ajs_2810 NC_008782.1 2973502 2974251 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(2973502..2974251) Acidovorax sp. JS42 4674232 YP_987028.1 CDS Ajs_2811 NC_008782.1 2974413 2975696 R PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS complement(2974413..2975696) Acidovorax sp. JS42 4674229 YP_987029.1 CDS Ajs_2812 NC_008782.1 2975716 2976534 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase complement(2975716..2976534) Acidovorax sp. JS42 4674211 YP_987030.1 CDS Ajs_2813 NC_008782.1 2976583 2977542 R PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily; histone deacetylase superfamily protein complement(2976583..2977542) Acidovorax sp. JS42 4674204 YP_987031.1 CDS Ajs_2814 NC_008782.1 2977581 2978501 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_2529 AAA_3 ATPase; ATPase 2977581..2978501 Acidovorax sp. JS42 4674212 YP_987032.1 CDS Ajs_2815 NC_008782.1 2978506 2979531 D PFAM: protein of unknown function DUF58; KEGG: rfr:Rfer_2530 protein of unknown function DUF58; hypothetical protein 2978506..2979531 Acidovorax sp. JS42 4674201 YP_987033.1 CDS Ajs_2816 NC_008782.1 2979631 2981697 D PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_2531 transglutaminase-like; transglutaminase domain-containing protein 2979631..2981697 Acidovorax sp. JS42 4674198 YP_987034.1 CDS Ajs_2817 NC_008782.1 2981694 2982767 D TIGRFAM: lytic murein transglycosylase B; KEGG: rfr:Rfer_2545 lytic murein transglycosylase B; lytic murein transglycosylase B 2981694..2982767 Acidovorax sp. JS42 4674181 YP_987035.1 CDS Ajs_2818 NC_008782.1 2982781 2983695 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2184 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2982781..2983695) Acidovorax sp. JS42 4674179 YP_987036.1 CDS Ajs_2819 NC_008782.1 2983809 2984891 D PFAM: conserved hypothetical protein 698; KEGG: pae:PA5383 hypothetical protein; hypothetical protein 2983809..2984891 Acidovorax sp. JS42 4674131 YP_987037.1 CDS Ajs_2820 NC_008782.1 2984892 2986205 R KEGG: rfr:Rfer_1487 putative transporter signal peptide protein; putative transporter signal peptide protein complement(2984892..2986205) Acidovorax sp. JS42 4674149 YP_987038.1 CDS Ajs_2821 NC_008782.1 2986258 2987067 R KEGG: pfl:PFL_3978 lipoprotein, putative; putative lipoprotein complement(2986258..2987067) Acidovorax sp. JS42 4673737 YP_987039.1 CDS Ajs_2822 NC_008782.1 2987279 2987719 D PFAM: CS; KEGG: pol:Bpro_3264 heat shock protein HSP20; CS protein 2987279..2987719 Acidovorax sp. JS42 4673720 YP_987040.1 CDS Ajs_2823 NC_008782.1 2987975 2989183 R PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214; hypothetical protein complement(2987975..2989183) Acidovorax sp. JS42 4673707 YP_987041.1 CDS Ajs_2824 NC_008782.1 2989180 2989950 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related; ABC transporter-like protein complement(2989180..2989950) Acidovorax sp. JS42 4673661 YP_987042.1 CDS Ajs_2825 NC_008782.1 2989947 2991347 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD; Fis family transcriptional regulator complement(2989947..2991347) Acidovorax sp. JS42 4673571 YP_987043.1 CDS Ajs_2826 NC_008782.1 2991419 2992846 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein complement(2991419..2992846) Acidovorax sp. JS42 4673567 YP_987044.1 CDS Ajs_2827 NC_008782.1 2993005 2994456 D PFAM: aldehyde dehydrogenase; KEGG: bpm:BURPS1710b_1049 aldehyde dehydrogenase family protein; aldehyde dehydrogenase 2993005..2994456 Acidovorax sp. JS42 4673459 YP_987045.1 CDS Ajs_2828 NC_008782.1 2994526 2995629 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(2994526..2995629) Acidovorax sp. JS42 4673437 YP_987046.1 CDS Ajs_2829 NC_008782.1 2995653 2996831 R PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A0821 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor complement(2995653..2996831) Acidovorax sp. JS42 4673414 YP_987047.1 CDS Ajs_2830 NC_008782.1 2996974 2997594 D PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2996974..2997594 Acidovorax sp. JS42 4673242 YP_987048.1 CDS Ajs_2831 NC_008782.1 2997926 2999170 D KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 2997926..2999170 Acidovorax sp. JS42 4673252 YP_987049.1 CDS Ajs_2832 NC_008782.1 2999205 3000146 D TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2555 nitrate transport permease; nitrate ABC transporter inner membrane subunit 2999205..3000146 Acidovorax sp. JS42 4673235 YP_987050.1 CDS Ajs_2833 NC_008782.1 3000143 3000946 D KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D 3000143..3000946 Acidovorax sp. JS42 4673385 YP_987051.1 CDS Ajs_2834 NC_008782.1 3001123 3001560 R PFAM: CBS domain containing protein; KEGG: bpm:BURPS1710b_A2480 CBS domain protein; signal-transduction protein complement(3001123..3001560) Acidovorax sp. JS42 4673331 YP_987052.1 CDS Ajs_2835 NC_008782.1 3001740 3002408 R KEGG: xcb:XC_3036 hypothetical protein; hypothetical protein complement(3001740..3002408) Acidovorax sp. JS42 4672731 YP_987053.1 CDS Ajs_2836 NC_008782.1 3002785 3004125 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_0965 multidrug/solvent RND membrane fusion protein, putative; RND family efflux transporter MFP subunit 3002785..3004125 Acidovorax sp. JS42 4672950 YP_987054.1 CDS Ajs_2837 NC_008782.1 3004144 3007311 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: psb:Psyr_2865 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein 3004144..3007311 Acidovorax sp. JS42 4672938 YP_987055.1 CDS Ajs_2838 NC_008782.1 3007308 3008894 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1416 RND efflux system outer membrane lipoprotein NodT; RND efflux system outer membrane lipoprotein 3007308..3008894 Acidovorax sp. JS42 4672681 YP_987056.1 CDS Ajs_2839 NC_008782.1 3009383 3011848 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB; assimilatory nitrite reductase (NAD(P)H) large subunit 3009383..3011848 Acidovorax sp. JS42 4672872 YP_987057.1 CDS Ajs_2840 NC_008782.1 3011925 3012314 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD; assimilatory nitrite reductase (NAD(P)H) small subunit 3011925..3012314 Acidovorax sp. JS42 4672696 YP_987058.1 CDS Ajs_2841 NC_008782.1 3012685 3015543 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase; assimilatory nitrate reductase (NADH) subunit alpha apoprotein 3012685..3015543 Acidovorax sp. JS42 4672678 YP_987059.1 CDS Ajs_2842 NC_008782.1 3015637 3016566 D PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3; glycosyl transferase family protein 3015637..3016566 Acidovorax sp. JS42 4672675 YP_987060.1 CDS Ajs_2843 NC_008782.1 3016563 3017372 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_2883 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase 3016563..3017372 Acidovorax sp. JS42 4672650 YP_987061.1 CDS Ajs_2844 NC_008782.1 3017377 3017877 R PFAM: thioesterase superfamily protein; KEGG: dar:Daro_3519 thioesterase superfamily; thioesterase superfamily protein complement(3017377..3017877) Acidovorax sp. JS42 4672478 YP_987062.1 CDS Ajs_2845 NC_008782.1 3018071 3019237 D PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B5396 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3018071..3019237 Acidovorax sp. JS42 4672793 YP_987063.1 CDS Ajs_2846 NC_008782.1 3019308 3020549 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2884 HI0933-like protein; hypothetical protein 3019308..3020549 Acidovorax sp. JS42 4672786 YP_987064.1 CDS Ajs_2847 NC_008782.1 3020652 3021857 D PFAM: NnrS family protein; KEGG: rfr:Rfer_1884 NnrS; NnrS family protein 3020652..3021857 Acidovorax sp. JS42 4672552 YP_987065.1 CDS Ajs_2848 NC_008782.1 3021928 3022227 D KEGG: bps:BPSL2375 hypothetical protein; hypothetical protein 3021928..3022227 Acidovorax sp. JS42 4672782 YP_987066.1 CDS Ajs_2849 NC_008782.1 3022295 3022852 R PFAM: protein of unknown function DUF59; KEGG: bte:BTH_I1792 domain of unknown function domain protein; hypothetical protein complement(3022295..3022852) Acidovorax sp. JS42 4672649 YP_987067.1 CDS Ajs_2850 NC_008782.1 3022849 3023328 R TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bps:BPSL2373 NifU family protein; NifU family SUF system FeS assembly protein complement(3022849..3023328) Acidovorax sp. JS42 4672657 YP_987068.1 CDS Ajs_2851 NC_008782.1 3023325 3024590 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bte:BTH_I1794 cysteine desulfurase SufS; class V aminotransferase complement(3023325..3024590) Acidovorax sp. JS42 4671999 YP_987069.1 CDS Ajs_2852 NC_008782.1 3024583 3025830 R PFAM: SufBD protein; KEGG: bte:BTH_I1795 SufD domain protein; SufBD protein complement(3024583..3025830) Acidovorax sp. JS42 4672198 YP_987070.1 CDS Ajs_2853 NC_008782.1 3025835 3026605 R KEGG: bte:BTH_I1796 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC complement(3025835..3026605) Acidovorax sp. JS42 4671975 YP_987071.1 CDS Ajs_2854 NC_008782.1 3026686 3028179 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(3026686..3028179) Acidovorax sp. JS42 4672159 YP_987072.1 CDS Ajs_2855 NC_008782.1 3028332 3029129 R PFAM: regulatory protein, ArsR; KEGG: bms:BR1913 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(3028332..3029129) Acidovorax sp. JS42 4671984 YP_987073.1 CDS Ajs_2856 NC_008782.1 3029160 3029513 D PFAM: NIPSNAP family containing protein; KEGG: bxe:Bxe_B1182 hypothetical protein; NIPSNAP family protein 3029160..3029513 Acidovorax sp. JS42 4671979 YP_987074.1 CDS Ajs_2857 NC_008782.1 3029510 3029914 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbr:BB3722 hypothetical protein; antibiotic biosynthesis monooxygenase 3029510..3029914 Acidovorax sp. JS42 4672119 YP_987075.1 CDS rpsU NC_008782.1 3030044 3030256 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3030044..3030256 Acidovorax sp. JS42 4671933 YP_987076.1 CDS Ajs_2859 NC_008782.1 3030354 3030815 D PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY; GatB/Yqey domain-containing protein 3030354..3030815 Acidovorax sp. JS42 4671955 YP_987077.1 CDS Ajs_2860 NC_008782.1 3031155 3032249 D KEGG: rso:RSp1612 probable tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 3031155..3032249 Acidovorax sp. JS42 4671498 YP_987078.1 CDS Ajs_2861 NC_008782.1 3032454 3032726 D PFAM: protein of unknown function DUF156; KEGG: atc:AGR_C_1623 hypothetical protein; hypothetical protein 3032454..3032726 Acidovorax sp. JS42 4671407 YP_987079.1 CDS Ajs_2862 NC_008782.1 3032723 3033724 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein; cation diffusion facilitator family transporter 3032723..3033724 Acidovorax sp. JS42 4671406 YP_987080.1 CDS Ajs_2863 NC_008782.1 3033736 3034380 D PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein; hypothetical protein 3033736..3034380 Acidovorax sp. JS42 4671471 YP_987081.1 CDS Ajs_2864 NC_008782.1 3034406 3034837 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: aci:ACIAD0422 hypothetical protein; glutathione-dependent formaldehyde-activating protein 3034406..3034837 Acidovorax sp. JS42 4671654 YP_987082.1 CDS Ajs_2865 NC_008782.1 3035182 3036261 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 3035182..3036261 Acidovorax sp. JS42 4671470 YP_987083.1 CDS Ajs_2866 NC_008782.1 3036370 3037458 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3036370..3037458 Acidovorax sp. JS42 4671468 YP_987084.1 CDS Ajs_2867 NC_008782.1 3037716 3038591 D KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 3037716..3038591 Acidovorax sp. JS42 4671641 YP_987085.1 CDS Ajs_2868 NC_008782.1 3038659 3039174 R PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45; hypothetical protein complement(3038659..3039174) Acidovorax sp. JS42 4671451 YP_987086.1 CDS Ajs_2869 NC_008782.1 3039239 3040228 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A2106 hypothetical protein; hypothetical protein complement(3039239..3040228) Acidovorax sp. JS42 4671610 YP_987087.1 CDS Ajs_2870 NC_008782.1 3040276 3041277 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065; hypothetical protein complement(3040276..3041277) Acidovorax sp. JS42 4671415 YP_987088.1 CDS Ajs_2871 NC_008782.1 3041314 3042297 R PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_A2729 putative hydroxymethylglutaryl-CoA lyase; hydroxymethylglutaryl-CoA lyase complement(3041314..3042297) Acidovorax sp. JS42 4671411 YP_987089.1 CDS Ajs_2872 NC_008782.1 3042294 3043514 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A2730 predicted acyl-CoA transferases/carnitine dehydratase, CaiB/BaiF family; L-carnitine dehydratase/bile acid-inducible protein F complement(3042294..3043514) Acidovorax sp. JS42 4670959 YP_987090.1 CDS Ajs_2873 NC_008782.1 3043635 3044534 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mca:MCA0999 transcriptional regulator, LysR family; LysR family transcriptional regulator 3043635..3044534 Acidovorax sp. JS42 4670540 YP_987091.1 CDS Ajs_2874 NC_008782.1 3044531 3045643 D KEGG: pol:Bpro_3073 hypothetical protein; hypothetical protein 3044531..3045643 Acidovorax sp. JS42 4670878 YP_987092.1 CDS Ajs_2875 NC_008782.1 3045810 3046364 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3045810..3046364 Acidovorax sp. JS42 4670869 YP_987093.1 CDS Ajs_2876 NC_008782.1 3046479 3046985 R KEGG: pol:Bpro_4141 hypothetical protein; hypothetical protein complement(3046479..3046985) Acidovorax sp. JS42 4670815 YP_987094.1 CDS Ajs_2877 NC_008782.1 3047085 3049172 R PFAM: Na+/solute symporter; KEGG: rfr:Rfer_2192 Na+/solute symporter; Na+/solute symporter complement(3047085..3049172) Acidovorax sp. JS42 4670522 YP_987095.1 CDS Ajs_2878 NC_008782.1 3049165 3049482 R KEGG: rfr:Rfer_2192 Na+/solute symporter; hypothetical protein complement(3049165..3049482) Acidovorax sp. JS42 4670519 YP_987096.1 CDS Ajs_2879 NC_008782.1 3049503 3051893 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(3049503..3051893) Acidovorax sp. JS42 4670768 YP_987097.1 CDS Ajs_2880 NC_008782.1 3052117 3052947 D PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299; hypothetical protein 3052117..3052947 Acidovorax sp. JS42 4670723 YP_987098.1 CDS Ajs_2881 NC_008782.1 3053048 3054604 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbo:SBO_0471 alkyl hydroperoxide reductase, F52a subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3053048..3054604) Acidovorax sp. JS42 4670722 YP_987099.1 CDS Ajs_2882 NC_008782.1 3054710 3055273 R with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate; alkyl hydroperoxide reductase subunit C complement(3054710..3055273) Acidovorax sp. JS42 4670705 YP_987100.1 CDS Ajs_2883 NC_008782.1 3055511 3055987 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin; bacterioferritin 3055511..3055987 Acidovorax sp. JS42 4670703 YP_987101.1 CDS Ajs_2884 NC_008782.1 3056292 3056621 D PFAM: flagellar transcriptional activator; KEGG: rfr:Rfer_3700 flagellar transcriptional activator FlhD; flagellar transcriptional activator, FlhD subunit 3056292..3056621 Acidovorax sp. JS42 4670508 YP_987102.1 CDS Ajs_2885 NC_008782.1 3056663 3057202 D With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems; transcriptional activator FlhC 3056663..3057202 Acidovorax sp. JS42 4670670 YP_987103.1 CDS Ajs_2886 NC_008782.1 3057284 3057856 R KEGG: mfa:Mfla_2213 hypothetical protein; hypothetical protein complement(3057284..3057856) Acidovorax sp. JS42 4670663 YP_987104.1 CDS Ajs_2887 NC_008782.1 3057853 3058467 R KEGG: dde:Dde_2399 hypothetical protein; hypothetical protein complement(3057853..3058467) Acidovorax sp. JS42 4670634 YP_987105.1 CDS Ajs_2888 NC_008782.1 3058565 3060748 R TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: pfo:Pfl_5250 intergral membrane protein; YccS/YhfK family integral membrane protein complement(3058565..3060748) Acidovorax sp. JS42 4670629 YP_987106.1 CDS Ajs_2889 NC_008782.1 3060759 3063608 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(3060759..3063608) Acidovorax sp. JS42 4670612 YP_987107.1 CDS hemC NC_008782.1 3063703 3064665 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3063703..3064665 Acidovorax sp. JS42 4670637 YP_987108.1 CDS Ajs_2891 NC_008782.1 3064668 3065486 D KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase; uroporphyrinogen-III synthase 3064668..3065486 Acidovorax sp. JS42 4670864 YP_987109.1 CDS Ajs_2892 NC_008782.1 3065476 3066552 D PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX; hypothetical protein 3065476..3066552 Acidovorax sp. JS42 4671059 YP_987110.1 CDS Ajs_2893 NC_008782.1 3066576 3067859 D PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein; HemY domain-containing protein 3066576..3067859 Acidovorax sp. JS42 4671091 YP_987111.1 CDS Ajs_2894 NC_008782.1 3067876 3068838 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(3067876..3068838) Acidovorax sp. JS42 4671163 YP_987112.1 CDS Ajs_2895 NC_008782.1 3069221 3069841 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3717 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3069221..3069841 Acidovorax sp. JS42 4671316 YP_987113.1 CDS Ajs_2896 NC_008782.1 3069914 3072844 D TIGRFAM: valyl-tRNA synthetase; KEGG: rfr:Rfer_2376 valyl-tRNA synthetase; valyl-tRNA synthetase 3069914..3072844 Acidovorax sp. JS42 4671186 YP_987114.1 CDS Ajs_2897 NC_008782.1 3072923 3073810 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_3723 UTP-glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase 3072923..3073810 Acidovorax sp. JS42 4671308 YP_987115.1 CDS Ajs_2898 NC_008782.1 3073922 3074149 R PFAM: SirA family protein; KEGG: rfr:Rfer_2377 SirA-like; SirA family protein complement(3073922..3074149) Acidovorax sp. JS42 4671275 YP_987116.1 CDS Ajs_2899 NC_008782.1 3074155 3074718 R PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase; NUDIX hydrolase complement(3074155..3074718) Acidovorax sp. JS42 4671657 YP_987117.1 CDS cysM NC_008782.1 3074834 3075739 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3074834..3075739) Acidovorax sp. JS42 4671505 YP_987118.1 CDS Ajs_2901 NC_008782.1 3076351 3076593 R KEGG: rso:RSc2574 hypothetical/unknown protein; hypothetical protein complement(3076351..3076593) Acidovorax sp. JS42 4671940 YP_987119.1 CDS Ajs_2902 NC_008782.1 3076590 3077852 R PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein; conjugation TrbI family protein complement(3076590..3077852) Acidovorax sp. JS42 4671925 YP_987120.1 CDS Ajs_2903 NC_008782.1 3077854 3078834 R PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein; conjugal transfer protein TrbG/VirB9/CagX complement(3077854..3078834) Acidovorax sp. JS42 4671945 YP_987121.1 CDS Ajs_2904 NC_008782.1 3078831 3079535 R PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1557 conjugal transfer protein; conjugal transfer protein TrbF complement(3078831..3079535) Acidovorax sp. JS42 4671901 YP_987122.1 CDS Ajs_2905 NC_008782.1 3079554 3080888 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(3079554..3080888) Acidovorax sp. JS42 4671841 YP_987123.1 CDS Ajs_2906 NC_008782.1 3080885 3081208 R KEGG: bam:Bamb_2009 putative lipoprotein; putative lipoprotein complement(3080885..3081208) Acidovorax sp. JS42 4672397 YP_987124.1 CDS Ajs_2907 NC_008782.1 3081220 3081948 R KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein; conjugal transfer protein TrbJ complement(3081220..3081948) Acidovorax sp. JS42 4672425 YP_987125.1 CDS Ajs_2908 NC_008782.1 3081945 3084380 R type IV secretion system VirB4 family; conjugal transfer ATPase TrbE complement(3081945..3084380) Acidovorax sp. JS42 4672490 YP_987126.1 CDS Ajs_2909 NC_008782.1 3084390 3084662 R KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein; putative conjugal transfer TrbD transmembrane protein complement(3084390..3084662) Acidovorax sp. JS42 4672507 YP_987127.1 CDS Ajs_2910 NC_008782.1 3084659 3085036 R PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1342 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(3084659..3085036) Acidovorax sp. JS42 4672513 YP_987128.1 CDS Ajs_2911 NC_008782.1 3085033 3086067 R PFAM: type II secretion system protein E; KEGG: rme:Rmet_1341 type II secretion system protein E; type II secretion system protein E complement(3085033..3086067) Acidovorax sp. JS42 4673030 YP_987129.1 CDS Ajs_2912 NC_008782.1 3086064 3086510 R KEGG: bam:Bamb_2003 CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein complement(3086064..3086510) Acidovorax sp. JS42 4673129 YP_987130.1 CDS Ajs_2913 NC_008782.1 3086507 3088504 R type IV secretion VirD4 coupling protein family; conjugal transfer coupling protein TraG complement(3086507..3088504) Acidovorax sp. JS42 4673856 YP_987131.1 CDS Ajs_2915 NC_008782.1 3088740 3089018 R KEGG: rme:Rmet_1547 putative lipoprotein; putative lipoprotein complement(3088740..3089018) Acidovorax sp. JS42 4673151 YP_987132.1 CDS Ajs_2916 NC_008782.1 3089151 3090665 R PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66; transposase IS66 complement(3089151..3090665) Acidovorax sp. JS42 4673103 YP_987133.1 CDS Ajs_2917 NC_008782.1 3090746 3091057 R PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like; IS66 Orf2 family protein complement(3090746..3091057) Acidovorax sp. JS42 4673734 YP_987134.1 CDS Ajs_2918 NC_008782.1 3091078 3091530 R PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein; transposase IS3/IS911 family protein complement(3091078..3091530) Acidovorax sp. JS42 4673768 YP_987135.1 CDS Ajs_2919 NC_008782.1 3091527 3092432 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_30970 putative transcriptional regulator; LysR family transcriptional regulator complement(3091527..3092432) Acidovorax sp. JS42 4673835 YP_987136.1 CDS Ajs_2920 NC_008782.1 3092469 3092786 R KEGG: bxe:Bxe_A1158 hypothetical protein; hypothetical protein complement(3092469..3092786) Acidovorax sp. JS42 4673938 YP_987137.1 CDS Ajs_2921 NC_008782.1 3092812 3093846 R PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A1157 MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily; secretion protein HlyD family protein complement(3092812..3093846) Acidovorax sp. JS42 4673945 YP_987138.1 CDS Ajs_2923 NC_008782.1 3094607 3095569 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(3094607..3095569) Acidovorax sp. JS42 4674203 YP_987139.1 CDS Ajs_2924 NC_008782.1 3096608 3098143 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A1155 MFS efflux system, outer membrane porin; RND efflux system outer membrane lipoprotein complement(3096608..3098143) Acidovorax sp. JS42 4673299 YP_987140.1 CDS Ajs_2925 NC_008782.1 3098244 3099023 D PFAM: regulatory protein, TetR; KEGG: bxe:Bxe_A1138 transcriptional regulator, TetR family; TetR family transcriptional regulator 3098244..3099023 Acidovorax sp. JS42 4673281 YP_987141.1 CDS Ajs_2926 NC_008782.1 3099023 3099514 D PFAM: regulatory protein, MarR; KEGG: bxe:Bxe_A1137 transcriptional regulator, MarR family; MarR family transcriptional regulator 3099023..3099514 Acidovorax sp. JS42 4673509 YP_987142.1 CDS Ajs_2927 NC_008782.1 3099511 3100470 D PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3099511..3100470 Acidovorax sp. JS42 4673248 YP_987143.1 CDS Ajs_2929 NC_008782.1 3103047 3103658 R KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein; TraF peptidase complement(3103047..3103658) Acidovorax sp. JS42 4672997 YP_987144.1 CDS Ajs_2930 NC_008782.1 3103655 3104200 R KEGG: pau:PA14_31090 hypothetical protein; hypothetical protein complement(3103655..3104200) Acidovorax sp. JS42 4672791 YP_987145.1 CDS Ajs_2931 NC_008782.1 3104197 3104472 R KEGG: rme:Rmet_3022 hypothetical protein; hypothetical protein complement(3104197..3104472) Acidovorax sp. JS42 4672379 YP_987146.1 CDS Ajs_2932 NC_008782.1 3104469 3105107 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(3104469..3105107) Acidovorax sp. JS42 4672019 YP_987147.1 CDS Ajs_2933 NC_008782.1 3105361 3106218 R KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein; putative replication initiator and transcription repressor protein complement(3105361..3106218) Acidovorax sp. JS42 4672248 YP_987148.1 CDS Ajs_2934 NC_008782.1 3106245 3106565 R KEGG: rme:Rmet_1484 hypothetical protein; hypothetical protein complement(3106245..3106565) Acidovorax sp. JS42 4671997 YP_987149.1 CDS Ajs_2935 NC_008782.1 3106634 3107383 R KEGG: rme:Rmet_3026 hypothetical protein; hypothetical protein complement(3106634..3107383) Acidovorax sp. JS42 4672143 YP_987150.1 CDS Ajs_2936 NC_008782.1 3107725 3108072 R KEGG: rme:Rmet_3027 putative lipoprotein; putative lipoprotein complement(3107725..3108072) Acidovorax sp. JS42 4672111 YP_987151.1 CDS Ajs_2937 NC_008782.1 3108295 3108588 D PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 3108295..3108588 Acidovorax sp. JS42 4671738 YP_987152.1 CDS Ajs_2938 NC_008782.1 3108818 3109861 D KEGG: xac:XAC2189 hypothetical protein; hypothetical protein 3108818..3109861 Acidovorax sp. JS42 4671430 YP_987153.1 CDS Ajs_2939 NC_008782.1 3110204 3110518 R PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein; hypothetical protein complement(3110204..3110518) Acidovorax sp. JS42 4671669 YP_987154.1 CDS Ajs_2941 NC_008782.1 3111327 3112142 R KEGG: sfr:Sfri_1670 hypothetical protein; hypothetical protein complement(3111327..3112142) Acidovorax sp. JS42 4671599 YP_987155.1 CDS Ajs_2942 NC_008782.1 3112382 3112591 R KEGG: rme:Rmet_3032 hypothetical protein; hypothetical protein complement(3112382..3112591) Acidovorax sp. JS42 4671210 YP_987156.1 CDS Ajs_2943 NC_008782.1 3112655 3114706 R PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease; nuclease complement(3112655..3114706) Acidovorax sp. JS42 4670555 YP_987157.1 CDS Ajs_2944 NC_008782.1 3114781 3115608 R PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932; hypothetical protein complement(3114781..3115608) Acidovorax sp. JS42 4670922 YP_987158.1 CDS Ajs_2946 NC_008782.1 3116240 3116488 R hypothetical protein complement(3116240..3116488) Acidovorax sp. JS42 4670735 YP_987159.1 CDS Ajs_2947 NC_008782.1 3116573 3117457 D KEGG: psb:Psyr_1555 cobyrinic acid a,c-diamide synthase; chromosome partitioning ATPase 3116573..3117457 Acidovorax sp. JS42 4670707 YP_987160.1 CDS Ajs_2948 NC_008782.1 3117454 3117897 D hypothetical protein 3117454..3117897 Acidovorax sp. JS42 4670602 YP_987161.1 CDS Ajs_2949 NC_008782.1 3118086 3118799 D KEGG: dar:Daro_2335 hypothetical protein; hypothetical protein 3118086..3118799 Acidovorax sp. JS42 4670635 YP_987162.1 CDS Ajs_2950 NC_008782.1 3118990 3120165 D KEGG: hch:HCH_07043 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase 3118990..3120165 Acidovorax sp. JS42 4670661 YP_987163.1 CDS Ajs_2951 NC_008782.1 3120162 3120362 D hypothetical protein 3120162..3120362 Acidovorax sp. JS42 4670698 YP_987164.1 CDS Ajs_2952 NC_008782.1 3120378 3122429 D KEGG: bcz:BCZK0828 conserved hypothetical protein; possible ATPase; hypothetical protein 3120378..3122429 Acidovorax sp. JS42 4670511 YP_987165.1 CDS Ajs_2953 NC_008782.1 3122618 3123988 D KEGG: hch:HCH_07046 hypothetical protein; hypothetical protein 3122618..3123988 Acidovorax sp. JS42 4670753 YP_987166.1 CDS Ajs_2954 NC_008782.1 3123985 3124947 D PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3123985..3124947 Acidovorax sp. JS42 4670837 YP_987167.1 CDS Ajs_2955 NC_008782.1 3125159 3125647 D hypothetical protein 3125159..3125647 Acidovorax sp. JS42 4670896 YP_987168.1 CDS Ajs_2956 NC_008782.1 3125647 3126864 D KEGG: rde:RD1_0808 hypothetical protein; hypothetical protein 3125647..3126864 Acidovorax sp. JS42 4670936 YP_987169.1 CDS Ajs_2957 NC_008782.1 3127020 3127334 R KEGG: bxe:Bxe_C1184 predicted transcriptional regulator; putative transcriptional regulator complement(3127020..3127334) Acidovorax sp. JS42 4670987 YP_987170.1 CDS Ajs_2958 NC_008782.1 3127312 3127662 R PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein; hypothetical protein complement(3127312..3127662) Acidovorax sp. JS42 4671553 YP_987171.1 CDS Ajs_2959 NC_008782.1 3127686 3129020 R PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase; phage integrase family protein complement(3127686..3129020) Acidovorax sp. JS42 4671584 YP_987172.1 CDS Ajs_2960 NC_008782.1 3129524 3129895 D hypothetical protein 3129524..3129895 Acidovorax sp. JS42 4671414 YP_987173.1 CDS infA NC_008782.1 3129919 3130179 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3129919..3130179 Acidovorax sp. JS42 4671617 YP_987174.1 CDS Ajs_2962 NC_008782.1 3130256 3130564 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 3130256..3130564 Acidovorax sp. JS42 4671466 YP_987175.1 CDS Ajs_2963 NC_008782.1 3130811 3131299 R KEGG: cvi:CV3228 hypothetical protein; hypothetical protein complement(3130811..3131299) Acidovorax sp. JS42 4671670 YP_987176.1 CDS Ajs_2964 NC_008782.1 3131303 3132085 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV3227 hypothetical protein; short-chain dehydrogenase/reductase SDR complement(3131303..3132085) Acidovorax sp. JS42 4671692 YP_987177.1 CDS Ajs_2965 NC_008782.1 3132097 3132633 R KEGG: dar:Daro_0495 lipoprotein, putative; putative lipoprotein complement(3132097..3132633) Acidovorax sp. JS42 4671769 YP_987178.1 CDS Ajs_2966 NC_008782.1 3132630 3133949 R KEGG: dar:Daro_0494 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3132630..3133949) Acidovorax sp. JS42 4672096 YP_987179.1 CDS Ajs_2967 NC_008782.1 3133946 3134404 R KEGG: dar:Daro_0493 hypothetical protein; hypothetical protein complement(3133946..3134404) Acidovorax sp. JS42 4672145 YP_987180.1 CDS Ajs_2968 NC_008782.1 3134570 3136288 R PFAM: chemotaxis sensory transducer; KEGG: reu:Reut_C6240 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3134570..3136288) Acidovorax sp. JS42 4672167 YP_987181.1 CDS Ajs_2969 NC_008782.1 3136322 3137542 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(3136322..3137542) Acidovorax sp. JS42 4671998 YP_987182.1 CDS Ajs_2970 NC_008782.1 3137545 3138363 R PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein; hypothetical protein complement(3137545..3138363) Acidovorax sp. JS42 4672011 YP_987183.1 CDS Ajs_2971 NC_008782.1 3138360 3139664 R PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(3138360..3139664) Acidovorax sp. JS42 4672284 YP_987184.1 CDS Ajs_2972 NC_008782.1 3139833 3140783 D PFAM: regulatory protein, MerR; cobalamin B12-binding domain protein; KEGG: reu:Reut_C6238 regulatory protein, MerR; MerR family transcriptional regulator 3139833..3140783 Acidovorax sp. JS42 4672031 YP_987185.1 CDS Ajs_2973 NC_008782.1 3140809 3141417 D PFAM: Lipocalin family protein; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin; Lipocalin family protein 3140809..3141417 Acidovorax sp. JS42 4672788 YP_987186.1 CDS Ajs_2974 NC_008782.1 3141548 3141877 R hypothetical protein complement(3141548..3141877) Acidovorax sp. JS42 4672812 YP_987187.1 CDS Ajs_2975 NC_008782.1 3142351 3142977 R hypothetical protein complement(3142351..3142977) Acidovorax sp. JS42 4672858 YP_987188.1 CDS Ajs_2976 NC_008782.1 3143202 3143576 D PFAM: LrgA family protein; KEGG: dar:Daro_3105 LrgA; LrgA family protein 3143202..3143576 Acidovorax sp. JS42 4672902 YP_987189.1 CDS Ajs_2977 NC_008782.1 3143573 3144298 D PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein; LrgB family protein 3143573..3144298 Acidovorax sp. JS42 4672941 YP_987190.1 CDS Ajs_2978 NC_008782.1 3144320 3145273 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_4071 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3144320..3145273) Acidovorax sp. JS42 4673029 YP_987191.1 CDS Ajs_2979 NC_008782.1 3145438 3146634 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aci:ACIAD1660 glutaryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3145438..3146634 Acidovorax sp. JS42 4673121 YP_987192.1 CDS Ajs_2980 NC_008782.1 3146787 3148043 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_4069 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3146787..3148043 Acidovorax sp. JS42 4673401 YP_987193.1 CDS Ajs_2981 NC_008782.1 3148134 3149102 D PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065; hypothetical protein 3148134..3149102 Acidovorax sp. JS42 4673406 YP_987194.1 CDS Ajs_2982 NC_008782.1 3149119 3150081 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(3149119..3150081) Acidovorax sp. JS42 4673448 YP_987195.1 CDS Ajs_2984 NC_008782.1 3151450 3152049 D KEGG: dme:Dmel_CG2839 CG2839; hypothetical protein 3151450..3152049 Acidovorax sp. JS42 4673531 YP_987196.1 CDS Ajs_2985 NC_008782.1 3152059 3152706 D KEGG: rso:RSc0392 probable proline-rich transmembrane protein; hypothetical protein 3152059..3152706 Acidovorax sp. JS42 4673587 YP_987197.1 CDS Ajs_2986 NC_008782.1 3152703 3153659 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3152703..3153659) Acidovorax sp. JS42 4673613 YP_987198.1 CDS Ajs_2987 NC_008782.1 3153705 3154757 D catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 3153705..3154757 Acidovorax sp. JS42 4673652 YP_987199.1 CDS Ajs_2988 NC_008782.1 3154944 3155294 R PFAM: protein of unknown function DUF326; KEGG: tbd:Tbd_2742 hypothetical protein; hypothetical protein complement(3154944..3155294) Acidovorax sp. JS42 4673664 YP_987200.1 CDS Ajs_2989 NC_008782.1 3155427 3156398 D PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3300 uncharacterized protein UPF0065; hypothetical protein 3155427..3156398 Acidovorax sp. JS42 4673673 YP_987201.1 CDS Ajs_2990 NC_008782.1 3156664 3157167 R KEGG: bpa:BPP3629 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(3156664..3157167) Acidovorax sp. JS42 4673729 YP_987202.1 CDS Ajs_2991 NC_008782.1 3157179 3158774 R TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rfr:Rfer_2509 poly(A) polymerase; poly(A) polymerase complement(3157179..3158774) Acidovorax sp. JS42 4674246 YP_987203.1 CDS Ajs_2992 NC_008782.1 3158771 3159472 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rfr:Rfer_2510 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase complement(3158771..3159472) Acidovorax sp. JS42 4674013 YP_987204.1 CDS Ajs_2993 NC_008782.1 3159523 3160215 R PFAM: Chromosomal replication initiator, DnaA; KEGG: rfr:Rfer_2511 chromosomal replication initiator, DnaA; chromosomal replication initiator DnaA complement(3159523..3160215) Acidovorax sp. JS42 4674015 YP_987205.1 CDS Ajs_2994 NC_008782.1 3160552 3161601 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3160552..3161601 Acidovorax sp. JS42 4674395 YP_987206.1 CDS Ajs_2995 NC_008782.1 3161620 3162699 D KEGG: rme:Rmet_5901 hypothetical protein; hypothetical protein 3161620..3162699 Acidovorax sp. JS42 4674546 YP_987207.1 CDS Ajs_2996 NC_008782.1 3162923 3163315 D PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA; UspA domain-containing protein 3162923..3163315 Acidovorax sp. JS42 4674652 YP_987208.1 CDS Ajs_2997 NC_008782.1 3163405 3164319 R PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344; hypothetical protein complement(3163405..3164319) Acidovorax sp. JS42 4674035 YP_987209.1 CDS Ajs_2998 NC_008782.1 3164427 3165275 R KEGG: rfr:Rfer_2526 hypothetical protein; hypothetical protein complement(3164427..3165275) Acidovorax sp. JS42 4674016 YP_987210.1 CDS Ajs_2999 NC_008782.1 3165289 3166887 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN; integral membrane protein MviN complement(3165289..3166887) Acidovorax sp. JS42 4674024 YP_987211.1 CDS rpsT NC_008782.1 3166959 3167261 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3166959..3167261 Acidovorax sp. JS42 4673979 YP_987212.1 CDS Ajs_3001 NC_008782.1 3167440 3167754 R KEGG: pol:Bpro_3571 hypothetical protein; hypothetical protein complement(3167440..3167754) Acidovorax sp. JS42 4673869 YP_987213.1 CDS Ajs_3002 NC_008782.1 3167989 3169185 D catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 3167989..3169185 Acidovorax sp. JS42 4673842 YP_987214.1 CDS Ajs_3003 NC_008782.1 3169202 3170119 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 3169202..3170119 Acidovorax sp. JS42 4673810 YP_987215.1 CDS Ajs_3004 NC_008782.1 3170457 3170801 D PFAM: protein of unknown function UPF0153; KEGG: pfl:PFL_1305 conserved hypothetical protein; hypothetical protein 3170457..3170801 Acidovorax sp. JS42 4673789 YP_987216.1 CDS Ajs_3005 NC_008782.1 3170932 3171129 R hypothetical protein complement(3170932..3171129) Acidovorax sp. JS42 4673779 YP_987217.1 CDS Ajs_3007 NC_008782.1 3171485 3174400 D PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 3171485..3174400 Acidovorax sp. JS42 4673695 YP_987218.1 CDS Ajs_3008 NC_008782.1 3174517 3174876 R KEGG: cvi:CV3035 probable transposase; putative transposase complement(3174517..3174876) Acidovorax sp. JS42 4673485 YP_987219.1 CDS Ajs_3009 NC_008782.1 3174983 3175786 R PFAM: PHP C-terminal domain protein; KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein; phosphotransferase domain-containing protein complement(3174983..3175786) Acidovorax sp. JS42 4673245 YP_987220.1 CDS Ajs_3010 NC_008782.1 3175779 3176927 R KEGG: noc:Noc_1499 hypothetical protein; hypothetical protein complement(3175779..3176927) Acidovorax sp. JS42 4673193 YP_987221.1 CDS Ajs_3011 NC_008782.1 3176984 3177793 R KEGG: bpm:BURPS1710b_1566 hypothetical protein; hypothetical protein complement(3176984..3177793) Acidovorax sp. JS42 4673949 YP_987222.1 CDS Ajs_3012 NC_008782.1 3178522 3180915 R PFAM: lipopolysaccharide biosynthesis; KEGG: eba:ebA6797 exopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis complement(3178522..3180915) Acidovorax sp. JS42 4674583 YP_987223.1 CDS Ajs_3013 NC_008782.1 3180966 3181778 R PFAM: polysaccharide export protein; KEGG: noc:Noc_1525 polysaccharide export protein; polysaccharide export protein complement(3180966..3181778) Acidovorax sp. JS42 4673099 YP_987224.1 CDS Ajs_3014 NC_008782.1 3182055 3183350 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein; UDP-glucose/GDP-mannose dehydrogenase 3182055..3183350 Acidovorax sp. JS42 4673196 YP_987225.1 CDS Ajs_3015 NC_008782.1 3183384 3184367 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB; oxidoreductase domain-containing protein 3183384..3184367 Acidovorax sp. JS42 4673075 YP_987226.1 CDS Ajs_3016 NC_008782.1 3184436 3185083 D KEGG: bbr:BB0154 probable acetyltransferase; putative acetyltransferase 3184436..3185083 Acidovorax sp. JS42 4673038 YP_987227.1 CDS Ajs_3017 NC_008782.1 3185087 3185356 D hypothetical protein 3185087..3185356 Acidovorax sp. JS42 4673034 YP_987228.1 CDS Ajs_3018 NC_008782.1 3185353 3186909 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; aminotransferase class-III; KEGG: msu:MS1498 WecE protein; DegT/DnrJ/EryC1/StrS aminotransferase 3185353..3186909 Acidovorax sp. JS42 4672848 YP_987229.1 CDS Ajs_3019 NC_008782.1 3186923 3187120 D KEGG: mac:MA2370 ATP-dependent DNA helicase; putative transcriptional regulator 3186923..3187120 Acidovorax sp. JS42 4672796 YP_987230.1 CDS Ajs_3020 NC_008782.1 3187117 3187566 D KEGG: syn:sll1543 hypothetical protein; hypothetical protein 3187117..3187566 Acidovorax sp. JS42 4672486 YP_987231.1 CDS Ajs_3021 NC_008782.1 3187556 3187768 D KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein 3187556..3187768 Acidovorax sp. JS42 4672531 YP_987232.1 CDS Ajs_3022 NC_008782.1 3188053 3189453 D KEGG: mhu:Mhun_2377 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3188053..3189453 Acidovorax sp. JS42 4672452 YP_987233.1 CDS Ajs_3023 NC_008782.1 3189463 3190620 D PFAM: glycosyl transferase, group 1; KEGG: mma:MM1178 glycosyltransferase; group 1 glycosyl transferase 3189463..3190620 Acidovorax sp. JS42 4672042 YP_987234.1 CDS Ajs_3024 NC_008782.1 3190614 3191858 D KEGG: plt:Plut_1854 hypothetical protein; hypothetical protein 3190614..3191858 Acidovorax sp. JS42 4672410 YP_987235.1 CDS Ajs_3025 NC_008782.1 3191845 3193014 D PFAM: glycosyl transferase, group 1; KEGG: pfl:PFL_5103 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 3191845..3193014 Acidovorax sp. JS42 4672326 YP_987236.1 CDS Ajs_3026 NC_008782.1 3193004 3194056 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; KEGG: eba:ebA5885 hypothetical protein; polysaccharide biosynthesis protein CapD 3193004..3194056 Acidovorax sp. JS42 4672189 YP_987237.1 CDS Ajs_3027 NC_008782.1 3194323 3194538 D KEGG: net:Neut_1360 conserved hypothetical protein; hypothetical protein 3194323..3194538 Acidovorax sp. JS42 4671885 YP_987238.1 CDS Ajs_3028 NC_008782.1 3194542 3194970 D TIGRFAM: PIN domain family protein; KEGG: net:Neut_1359 PIN domain family protein; PilT domain-containing protein 3194542..3194970 Acidovorax sp. JS42 4671936 YP_987239.1 CDS Ajs_3029 NC_008782.1 3195058 3196209 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA5887 probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis; NAD-dependent epimerase/dehydratase 3195058..3196209 Acidovorax sp. JS42 4674257 YP_987240.1 CDS Ajs_3030 NC_008782.1 3196206 3197426 D PFAM: SMC domain protein; KEGG: cch:Cag_0257 ATPase; SMC domain-containing protein 3196206..3197426 Acidovorax sp. JS42 4671821 YP_987241.1 CDS Ajs_3031 NC_008782.1 3197423 3197920 D KEGG: cch:Cag_0256 hypothetical protein; hypothetical protein 3197423..3197920 Acidovorax sp. JS42 4671814 YP_987242.1 CDS Ajs_3032 NC_008782.1 3197928 3199070 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eba:ebA5890 predicted UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 3197928..3199070 Acidovorax sp. JS42 4671804 YP_987243.1 CDS Ajs_3033 NC_008782.1 3199090 3200322 D PFAM: glycosyl transferase, group 1; KEGG: eba:ebA5893 predicted glycosyltransferase; group 1 glycosyl transferase 3199090..3200322 Acidovorax sp. JS42 4671772 YP_987244.1 CDS Ajs_3034 NC_008782.1 3200408 3201001 D PFAM: sugar transferase; KEGG: rme:Rmet_2726 sugar transferase; undecaprenyl-phosphate galactose phosphotransferase 3200408..3201001 Acidovorax sp. JS42 4671288 YP_987245.1 CDS Ajs_3035 NC_008782.1 3200998 3201663 D KEGG: rso:RS02341 putative acetyl transferase protein; putative acetyl transferase protein 3200998..3201663 Acidovorax sp. JS42 4671478 YP_987246.1 CDS Ajs_3036 NC_008782.1 3201678 3202088 D PFAM: VanZ family protein; VanZ family protein 3201678..3202088 Acidovorax sp. JS42 4671920 YP_987247.1 CDS Ajs_3037 NC_008782.1 3202109 3203335 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 3202109..3203335 Acidovorax sp. JS42 4671346 YP_987248.1 CDS Ajs_3039 NC_008782.1 3205648 3206673 R KEGG: noc:Noc_1503 probable binding-protein-dependent transport system protein; putative-binding-protein-dependent transport system protein complement(3205648..3206673) Acidovorax sp. JS42 4671155 YP_987249.1 CDS Ajs_3040 NC_008782.1 3207347 3207658 D hypothetical protein 3207347..3207658 Acidovorax sp. JS42 4671120 YP_987250.1 CDS Ajs_3041 NC_008782.1 3207833 3208048 R hypothetical protein complement(3207833..3208048) Acidovorax sp. JS42 4671110 YP_987251.1 CDS Ajs_3042 NC_008782.1 3208143 3208745 R PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein; hypothetical protein complement(3208143..3208745) Acidovorax sp. JS42 4671090 YP_987252.1 CDS Ajs_3043 NC_008782.1 3208859 3210085 D PFAM: Radical SAM N-terminal domain protein; KEGG: rfr:Rfer_2734 radical SAM; radical SAM domain-containing protein 3208859..3210085 Acidovorax sp. JS42 4671075 YP_987253.1 CDS Ajs_3044 NC_008782.1 3210200 3213115 D PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3; transposase Tn3 family protein 3210200..3213115 Acidovorax sp. JS42 4671064 YP_987254.1 CDS Ajs_3045 NC_008782.1 3213209 3213571 D hypothetical protein 3213209..3213571 Acidovorax sp. JS42 4671056 YP_987255.1 CDS Ajs_3046 NC_008782.1 3214481 3215617 R SMART: regulatory protein, LuxR; KEGG: bam:Bamb_3845 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(3214481..3215617) Acidovorax sp. JS42 4670988 YP_987256.1 CDS Ajs_3048 NC_008782.1 3216346 3217524 R KEGG: xcb:XC_2079 YeeC-like protein; YeeC-like protein complement(3216346..3217524) Acidovorax sp. JS42 4670780 YP_987257.1 CDS Ajs_3050 NC_008782.1 3218129 3219667 D PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 3218129..3219667 Acidovorax sp. JS42 4670578 YP_987258.1 CDS Ajs_3051 NC_008782.1 3219858 3220658 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(3219858..3220658) Acidovorax sp. JS42 4670598 YP_987259.1 CDS Ajs_3052 NC_008782.1 3220651 3222165 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit complement(3220651..3222165) Acidovorax sp. JS42 4670599 YP_987260.1 CDS Ajs_3054 NC_008782.1 3222494 3222991 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mca:MCA1387 arsenate reductase, putative; protein tyrosine phosphatase complement(3222494..3222991) Acidovorax sp. JS42 4670611 YP_987261.1 CDS Ajs_3055 NC_008782.1 3223015 3223335 R SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein; ArsR family transcriptional regulator complement(3223015..3223335) Acidovorax sp. JS42 4670655 YP_987262.1 CDS Ajs_3056 NC_008782.1 3223430 3224377 R PFAM: lipid A biosynthesis acyltransferase; KEGG: mxa:MXAN_1057 bacterial lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(3223430..3224377) Acidovorax sp. JS42 4670668 YP_987263.1 CDS Ajs_3057 NC_008782.1 3224439 3226154 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1174 ABC transporter related; ABC transporter-like protein complement(3224439..3226154) Acidovorax sp. JS42 4670686 YP_987264.1 CDS Ajs_3058 NC_008782.1 3226208 3227191 R PFAM: diacylglycerol kinase, catalytic region; KEGG: nmu:Nmul_A0405 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit complement(3226208..3227191) Acidovorax sp. JS42 4670708 YP_987265.1 CDS Ajs_3059 NC_008782.1 3227227 3228342 R PFAM: fatty acid desaturase; KEGG: rba:RB5740 hypothetical protein-transmembrane prediction; fatty acid desaturase complement(3227227..3228342) Acidovorax sp. JS42 4670728 YP_987266.1 CDS Ajs_3060 NC_008782.1 3228440 3229213 R KEGG: rfr:Rfer_0612 hypothetical protein; hypothetical protein complement(3228440..3229213) Acidovorax sp. JS42 4670730 YP_987267.1 CDS Ajs_3061 NC_008782.1 3229244 3230176 R KEGG: gox:GOX2055 hypothetical protein; hypothetical protein complement(3229244..3230176) Acidovorax sp. JS42 4670755 YP_987268.1 CDS Ajs_3062 NC_008782.1 3230173 3231330 R KEGG: ccr:CC1159 hypothetical protein; hypothetical protein complement(3230173..3231330) Acidovorax sp. JS42 4670757 YP_987269.1 CDS Ajs_3063 NC_008782.1 3231413 3232336 D PFAM: metallophosphoesterase; KEGG: gox:GOX2053 hypothetical protein; metallophosphoesterase 3231413..3232336 Acidovorax sp. JS42 4670816 YP_987270.1 CDS Ajs_3064 NC_008782.1 3232323 3232814 D PFAM: histidine triad (HIT) protein; KEGG: ccr:CC1157 hypothetical protein; histidine triad (HIT) protein 3232323..3232814 Acidovorax sp. JS42 4670870 YP_987271.1 CDS Ajs_3065 NC_008782.1 3232834 3234024 D PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1156 hypothetical protein; permease 3232834..3234024 Acidovorax sp. JS42 4670899 YP_987272.1 CDS Ajs_3066 NC_008782.1 3234021 3235088 D PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1155 hypothetical protein; permease 3234021..3235088 Acidovorax sp. JS42 4670916 YP_987273.1 CDS Ajs_3067 NC_008782.1 3235085 3236293 D KEGG: hne:HNE_1581 putative phosphatidyltransferase; putative phosphatidyltransferase 3235085..3236293 Acidovorax sp. JS42 4670966 YP_987274.1 CDS Ajs_3068 NC_008782.1 3236300 3237427 D KEGG: ccr:CC1154 hypothetical protein; hypothetical protein 3236300..3237427 Acidovorax sp. JS42 4670967 YP_987275.1 CDS Ajs_3069 NC_008782.1 3237429 3238235 D KEGG: ccr:CC1153 hypothetical protein; hypothetical protein 3237429..3238235 Acidovorax sp. JS42 4671043 YP_987276.1 CDS Ajs_3070 NC_008782.1 3238221 3239012 R PFAM: Nucleotidyl transferase; KEGG: ccr:CC1152 nucleotidyltransferase family protein; nucleotidyl transferase complement(3238221..3239012) Acidovorax sp. JS42 4671050 YP_987277.1 CDS Ajs_3071 NC_008782.1 3239076 3239732 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: bte:BTH_II2340 4-phosphopantetheinyl transferase family protein; 4'-phosphopantetheinyl transferase complement(3239076..3239732) Acidovorax sp. JS42 4670562 YP_987278.1 CDS Ajs_3072 NC_008782.1 3239796 3241109 D PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein; cytochrome P450 3239796..3241109 Acidovorax sp. JS42 4671142 YP_987279.1 CDS Ajs_3073 NC_008782.1 3241129 3243090 D PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sdn:Sden_3532 amino acid adenylation; AMP-dependent synthetase and ligase 3241129..3243090 Acidovorax sp. JS42 4670584 YP_987280.1 CDS Ajs_3074 NC_008782.1 3243316 3245127 D PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A0231 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3243316..3245127 Acidovorax sp. JS42 4671195 YP_987281.1 CDS Ajs_3075 NC_008782.1 3245147 3245395 D KEGG: gbe:GbCGDNIH1_0240 acyl carrier protein; acyl carrier protein 3245147..3245395 Acidovorax sp. JS42 4671283 YP_987282.1 CDS Ajs_3076 NC_008782.1 3245392 3246573 D PFAM: aminotransferase, class V; aminotransferase, class I and II; aminotransferase class-III; KEGG: neu:NE1655 aminotransferase class-I; serine palmitoyltransferase 3245392..3246573 Acidovorax sp. JS42 4671200 YP_987283.1 CDS Ajs_3077 NC_008782.1 3246578 3247498 R hypothetical protein complement(3246578..3247498) Acidovorax sp. JS42 4671307 YP_987284.1 CDS Ajs_3078 NC_008782.1 3247671 3248555 D KEGG: syf:Synpcc7942_2287 hypothetical protein; hypothetical protein 3247671..3248555 Acidovorax sp. JS42 4671242 YP_987285.1 CDS Ajs_3079 NC_008782.1 3248581 3249660 R KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase; nucleoside-diphosphate-sugar epimerase-like protein complement(3248581..3249660) Acidovorax sp. JS42 4671884 YP_987286.1 CDS Ajs_3080 NC_008782.1 3249660 3250646 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: gbe:GbCGDNIH1_0241 NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein; NAD-dependent epimerase/dehydratase complement(3249660..3250646) Acidovorax sp. JS42 4671937 YP_987287.1 CDS Ajs_3081 NC_008782.1 3250745 3251047 D KEGG: ade:Adeh_3627 HNH endonuclease; hypothetical protein 3250745..3251047 Acidovorax sp. JS42 4671532 YP_987288.1 CDS Ajs_3082 NC_008782.1 3251066 3251578 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bxe:Bxe_A1491 putative cytidine/deoxycytidylate deaminase family protein; CMP/dCMP deaminase complement(3251066..3251578) Acidovorax sp. JS42 4671544 YP_987289.1 CDS Ajs_3083 NC_008782.1 3251642 3251971 R hypothetical protein complement(3251642..3251971) Acidovorax sp. JS42 4671271 YP_987290.1 CDS Ajs_3085 NC_008782.1 3254996 3255760 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(3254996..3255760) Acidovorax sp. JS42 4671597 YP_987291.1 CDS Ajs_3086 NC_008782.1 3255757 3257352 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region; integrase catalytic subunit complement(3255757..3257352) Acidovorax sp. JS42 4671618 YP_987292.1 CDS Ajs_3087 NC_008782.1 3257465 3259048 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_0990 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3257465..3259048 Acidovorax sp. JS42 4671643 YP_987293.1 CDS Ajs_3088 NC_008782.1 3259015 3259920 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1092 probable transcriptional regulatory DNA-binding transcription regulator protein; LysR family transcriptional regulator complement(3259015..3259920) Acidovorax sp. JS42 4671684 YP_987294.1 CDS Ajs_3089 NC_008782.1 3260037 3261023 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit 3260037..3261023 Acidovorax sp. JS42 4671697 YP_987295.1 CDS Ajs_3090 NC_008782.1 3261069 3261629 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3261069..3261629 Acidovorax sp. JS42 4671700 YP_987296.1 CDS Ajs_3091 NC_008782.1 3261670 3261984 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0985 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein 3261670..3261984 Acidovorax sp. JS42 4671730 YP_987297.1 CDS Ajs_3092 NC_008782.1 3262073 3263416 D PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sfv:SFV_2586 large terminal subunit of phenylpropionate dioxygenase; ring hydroxylating dioxygenase subunit alpha 3262073..3263416 Acidovorax sp. JS42 4671745 YP_987298.1 CDS Ajs_3093 NC_008782.1 3263431 3264015 D PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit beta 3263431..3264015 Acidovorax sp. JS42 4671792 YP_987299.1 CDS Ajs_3096 NC_008782.1 3265718 3266698 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(3265718..3266698) Acidovorax sp. JS42 4672050 YP_987300.1 CDS Ajs_3098 NC_008782.1 3267209 3268030 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(3267209..3268030) Acidovorax sp. JS42 4672090 YP_987301.1 CDS Ajs_3099 NC_008782.1 3268020 3269552 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA; integrase catalytic subunit complement(3268020..3269552) Acidovorax sp. JS42 4672105 YP_987302.1 CDS Ajs_3100 NC_008782.1 3269636 3269980 R KEGG: pol:Bpro_1484 inner-membrane translocator; inner-membrane translocator complement(3269636..3269980) Acidovorax sp. JS42 4671851 YP_987303.1 CDS Ajs_3101 NC_008782.1 3269967 3271568 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related; ABC transporter-like protein complement(3269967..3271568) Acidovorax sp. JS42 4672115 YP_987304.1 CDS Ajs_3102 NC_008782.1 3271749 3273272 D PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 3271749..3273272 Acidovorax sp. JS42 4672133 YP_987305.1 CDS Ajs_3103 NC_008782.1 3273269 3275674 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase 3273269..3275674 Acidovorax sp. JS42 4672158 YP_987306.1 CDS Ajs_3104 NC_008782.1 3275710 3277812 R KEGG: csa:Csal_1723 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(3275710..3277812) Acidovorax sp. JS42 4672166 YP_987307.1 CDS Ajs_3105 NC_008782.1 3278063 3278686 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_3168 transcriptional regulator, Crp/Fnr family; Crp/FNR family transcriptional regulator complement(3278063..3278686) Acidovorax sp. JS42 4672243 YP_987308.1 CDS Ajs_3107 NC_008782.1 3280187 3282019 D PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_2030 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 3280187..3282019 Acidovorax sp. JS42 4672276 YP_987309.1 CDS Ajs_3108 NC_008782.1 3282178 3282609 D PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_0004 histidine triad (HIT) protein; histidine triad (HIT) protein 3282178..3282609 Acidovorax sp. JS42 4672293 YP_987310.1 CDS Ajs_3109 NC_008782.1 3282617 3283606 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(3282617..3283606) Acidovorax sp. JS42 4672310 YP_987311.1 CDS Ajs_3110 NC_008782.1 3283751 3285007 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3211 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3283751..3285007 Acidovorax sp. JS42 4672391 YP_987312.1 CDS Ajs_3111 NC_008782.1 3284997 3285968 D KEGG: rfr:Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 3284997..3285968 Acidovorax sp. JS42 4672430 YP_987313.1 CDS Ajs_3112 NC_008782.1 3285965 3286642 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related; ABC transporter-like protein 3285965..3286642 Acidovorax sp. JS42 4672443 YP_987314.1 CDS Ajs_3113 NC_008782.1 3286639 3287067 R PFAM: heat shock protein Hsp20; KEGG: cvi:CV1177 probable small heat shock protein; heat shock protein Hsp20 complement(3286639..3287067) Acidovorax sp. JS42 4672441 YP_987315.1 CDS Ajs_3114 NC_008782.1 3287205 3289838 D PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214; hypothetical protein 3287205..3289838 Acidovorax sp. JS42 4674409 YP_987316.1 CDS Ajs_3115 NC_008782.1 3289848 3290939 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_1520 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta 3289848..3290939 Acidovorax sp. JS42 4672743 YP_987317.1 CDS Ajs_3116 NC_008782.1 3290939 3292081 D KEGG: pol:Bpro_3228 secreted hydrolase-like; secreted hydrolase-like protein 3290939..3292081 Acidovorax sp. JS42 4673163 YP_987318.1 CDS Ajs_3117 NC_008782.1 3292283 3293284 R PFAM: inner-membrane translocator; KEGG: rme:Rmet_3516 inner-membrane translocator; inner-membrane translocator complement(3292283..3293284) Acidovorax sp. JS42 4672753 YP_987319.1 CDS Ajs_3118 NC_008782.1 3293302 3294186 R PFAM: inner-membrane translocator; KEGG: reu:Reut_A3368 inner-membrane translocator; inner-membrane translocator complement(3293302..3294186) Acidovorax sp. JS42 4672806 YP_987320.1 CDS Ajs_3119 NC_008782.1 3294223 3295419 R KEGG: reu:Reut_A3369 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3294223..3295419) Acidovorax sp. JS42 4672535 YP_987321.1 CDS Ajs_3120 NC_008782.1 3295503 3296705 R KEGG: rso:RSc3342 putative substrate-binding periplasmic (pbp) ABC transporter protein; putative substrate-binding periplasmic (pbp) ABC transporter protein complement(3295503..3296705) Acidovorax sp. JS42 4672533 YP_987322.1 CDS Ajs_3121 NC_008782.1 3296751 3297464 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I3330 branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3296751..3297464) Acidovorax sp. JS42 4672897 YP_987323.1 CDS Ajs_3122 NC_008782.1 3297466 3298236 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein; ABC transporter-like protein complement(3297466..3298236) Acidovorax sp. JS42 4673016 YP_987324.1 CDS Ajs_3123 NC_008782.1 3298409 3299248 R PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rfr:Rfer_2857 putative transcriptional regulator, ModE family; ModE family transcriptional regulator complement(3298409..3299248) Acidovorax sp. JS42 4673035 YP_987325.1 CDS Ajs_3124 NC_008782.1 3299273 3300028 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pae:PA1863 molybdate transport system substrate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 3299273..3300028 Acidovorax sp. JS42 4673040 YP_987326.1 CDS Ajs_3125 NC_008782.1 3300104 3300787 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0824 molybdenum transport system permease protein; molybdate ABC transporter inner membrane subunit 3300104..3300787 Acidovorax sp. JS42 4673050 YP_987327.1 CDS Ajs_3126 NC_008782.1 3300784 3301878 D KEGG: rfr:Rfer_2860 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 3300784..3301878 Acidovorax sp. JS42 4673086 YP_987328.1 CDS Ajs_3127 NC_008782.1 3302205 3303029 R PFAM: extracellular solute-binding protein, family 1; KEGG: bpa:BPP1941 putative exported protein; extracellular solute-binding protein complement(3302205..3303029) Acidovorax sp. JS42 4673159 YP_987329.1 CDS Ajs_3128 NC_008782.1 3303026 3303802 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2128 probable ATP-binding component of ABC transporter; ABC transporter-like protein complement(3303026..3303802) Acidovorax sp. JS42 4673182 YP_987330.1 CDS Ajs_3129 NC_008782.1 3303799 3304536 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2869 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3303799..3304536) Acidovorax sp. JS42 4673984 YP_987331.1 CDS Ajs_3130 NC_008782.1 3304587 3305708 D PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_2870 transcriptional regulator of molybdate metabolism, LysR family; molybdate metabolism transcriptional regulator 3304587..3305708 Acidovorax sp. JS42 4673986 YP_987332.1 CDS Ajs_3131 NC_008782.1 3305745 3307724 R PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4053 TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM complement(3305745..3307724) Acidovorax sp. JS42 4673369 YP_987333.1 CDS Ajs_3132 NC_008782.1 3307721 3308341 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4052 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ complement(3307721..3308341) Acidovorax sp. JS42 4673391 YP_987334.1 CDS Ajs_3133 NC_008782.1 3308469 3309584 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4051 twin-arginine translocation pathway signal; TRAP dicarboxylate transporter subunit DctP complement(3308469..3309584) Acidovorax sp. JS42 4673461 YP_987335.1 CDS Ajs_3134 NC_008782.1 3310017 3311069 D PFAM: Malate/L-lactate dehydrogenase; KEGG: psb:Psyr_2143 malate/L-lactate dehydrogenase; delta1-piperideine 2-carboxylate reductase 3310017..3311069 Acidovorax sp. JS42 4673486 YP_987336.1 CDS Ajs_3135 NC_008782.1 3311164 3312411 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0898 major facilitator superfamily (MFS) multidrug efflux pump, Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter complement(3311164..3312411) Acidovorax sp. JS42 4673618 YP_987337.1 CDS Ajs_3136 NC_008782.1 3312471 3314108 R PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase; AMP-dependent synthetase and ligase complement(3312471..3314108) Acidovorax sp. JS42 4673641 YP_987338.1 CDS Ajs_3137 NC_008782.1 3314198 3316159 D KEGG: rfr:Rfer_2203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 3314198..3316159 Acidovorax sp. JS42 4673727 YP_987339.1 CDS Ajs_3138 NC_008782.1 3316445 3318838 D TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD); RpoD family RNA polymerase sigma factor 3316445..3318838 Acidovorax sp. JS42 4673740 YP_987340.1 CDS Ajs_3139 NC_008782.1 3319043 3320002 D KEGG: eba:ebA232 ketopantoate reductase ApbA; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 3319043..3320002 Acidovorax sp. JS42 4673791 YP_987341.1 CDS Ajs_3140 NC_008782.1 3320167 3320625 D KEGG: pol:Bpro_3366 putative protein-S-isoprenylcysteine methyltransferase-like; putative protein-S-isoprenylcysteine methyltransferase-like protein 3320167..3320625 Acidovorax sp. JS42 4673829 YP_987342.1 CDS Ajs_3141 NC_008782.1 3320670 3321671 R PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2351 uncharacterized protein UPF0065; hypothetical protein complement(3320670..3321671) Acidovorax sp. JS42 4673995 YP_987343.1 CDS Ajs_3142 NC_008782.1 3321768 3322976 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2352 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3321768..3322976) Acidovorax sp. JS42 4674697 YP_987344.1 CDS Ajs_3143 NC_008782.1 3323015 3323986 R PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_2353 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase complement(3323015..3323986) Acidovorax sp. JS42 4674551 YP_987345.1 CDS Ajs_3144 NC_008782.1 3324098 3325000 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family; LysR family transcriptional regulator 3324098..3325000 Acidovorax sp. JS42 4674494 YP_987346.1 CDS Ajs_3145 NC_008782.1 3325175 3325480 D KEGG: pol:Bpro_3120 putative transcriptional regulator; putative transcriptional regulator 3325175..3325480 Acidovorax sp. JS42 4674456 YP_987347.1 CDS Ajs_3146 NC_008782.1 3325609 3325968 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: rfr:Rfer_1971 peptidylprolyl isomerase, FKBP-type; peptidylprolyl isomerase 3325609..3325968 Acidovorax sp. JS42 4674408 YP_987348.1 CDS rimO NC_008782.1 3326061 3327452 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(3326061..3327452) Acidovorax sp. JS42 4674112 YP_987349.1 CDS Ajs_3148 NC_008782.1 3327480 3328049 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor, PhaR complement(3327480..3328049) Acidovorax sp. JS42 4674288 YP_987350.1 CDS Ajs_3149 NC_008782.1 3328386 3330629 R KEGG: rfr:Rfer_2071 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA complement(3328386..3330629) Acidovorax sp. JS42 4674241 YP_987351.1 CDS Ajs_3150 NC_008782.1 3330626 3331561 R PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(3330626..3331561) Acidovorax sp. JS42 4673724 YP_987352.1 CDS Ajs_3151 NC_008782.1 3331631 3332413 D catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 3331631..3332413 Acidovorax sp. JS42 4673672 YP_987353.1 CDS Ajs_3152 NC_008782.1 3332493 3333206 R PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541; hypothetical protein complement(3332493..3333206) Acidovorax sp. JS42 4673665 YP_987354.1 CDS ompR NC_008782.1 3333427 3334158 D part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 3333427..3334158 Acidovorax sp. JS42 4673651 YP_987355.1 CDS Ajs_3154 NC_008782.1 3334242 3335747 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3334242..3335747 Acidovorax sp. JS42 4673643 YP_987356.1 CDS Ajs_3155 NC_008782.1 3335823 3336326 R KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3335823..3336326) Acidovorax sp. JS42 4673604 YP_987357.1 CDS Ajs_3156 NC_008782.1 3336323 3337246 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3336323..3337246) Acidovorax sp. JS42 4673589 YP_987358.1 CDS Ajs_3157 NC_008782.1 3337264 3340758 D KEGG: rfr:Rfer_1331 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 3337264..3340758 Acidovorax sp. JS42 4673559 YP_987359.1 CDS Ajs_3158 NC_008782.1 3340767 3341441 D KEGG: rme:Rmet_1193 hypothetical protein; hypothetical protein 3340767..3341441 Acidovorax sp. JS42 4673541 YP_987360.1 CDS Ajs_3159 NC_008782.1 3341483 3342199 D KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase 3341483..3342199 Acidovorax sp. JS42 4673532 YP_987361.1 CDS Ajs_3160 NC_008782.1 3342435 3343220 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4519 putative exported protein; YaeC family lipoprotein 3342435..3343220 Acidovorax sp. JS42 4673528 YP_987362.1 CDS Ajs_3161 NC_008782.1 3343294 3343953 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3343294..3343953) Acidovorax sp. JS42 4673503 YP_987363.1 CDS Ajs_3162 NC_008782.1 3343997 3344908 D specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3343997..3344908 Acidovorax sp. JS42 4673494 YP_987364.1 CDS Ajs_3163 NC_008782.1 3344963 3345463 R TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1883 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(3344963..3345463) Acidovorax sp. JS42 4673469 YP_987365.1 CDS Ajs_3164 NC_008782.1 3345553 3346275 D PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_B5056 protein of unknown function DUF542, ScdA N-terminal:hemerythrin HHE cation binding region; hypothetical protein 3345553..3346275 Acidovorax sp. JS42 4673436 YP_987366.1 CDS Ajs_3165 NC_008782.1 3346282 3346647 R KEGG: rme:Rmet_3997 hypothetical protein; hypothetical protein complement(3346282..3346647) Acidovorax sp. JS42 4673251 YP_987367.1 CDS Ajs_3166 NC_008782.1 3346647 3347093 R KEGG: par:Psyc_0620 hypothetical protein; hypothetical protein complement(3346647..3347093) Acidovorax sp. JS42 4673415 YP_987368.1 CDS Ajs_3167 NC_008782.1 3347112 3348176 R PFAM: aldo/keto reductase; KEGG: rfr:Rfer_3469 aldo/keto reductase; aldo/keto reductase complement(3347112..3348176) Acidovorax sp. JS42 4673232 YP_987369.1 CDS Ajs_3168 NC_008782.1 3348190 3348405 R PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein; SlyX family protein complement(3348190..3348405) Acidovorax sp. JS42 4673382 YP_987370.1 CDS Ajs_3169 NC_008782.1 3348411 3349655 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II; GntR family transcriptional regulator complement(3348411..3349655) Acidovorax sp. JS42 4673378 YP_987371.1 CDS Ajs_3170 NC_008782.1 3349718 3350368 D KEGG: pol:Bpro_2747 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 3349718..3350368 Acidovorax sp. JS42 4673013 YP_987372.1 CDS Ajs_3171 NC_008782.1 3350406 3351233 R KEGG: bur:Bcep18194_B2655 hypothetical protein; hypothetical protein complement(3350406..3351233) Acidovorax sp. JS42 4672988 YP_987373.1 CDS Ajs_3172 NC_008782.1 3351254 3353071 R KEGG: bur:Bcep18194_C7091 hypothetical protein; hypothetical protein complement(3351254..3353071) Acidovorax sp. JS42 4672981 YP_987374.1 CDS Ajs_3173 NC_008782.1 3353152 3355965 R PFAM: Tetratricopeptide TPR_4; KEGG: pst:PSPTO_1193 hypothetical protein; hypothetical protein complement(3353152..3355965) Acidovorax sp. JS42 4672929 YP_987375.1 CDS Ajs_3176 NC_008782.1 3359657 3360715 R PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: rfr:Rfer_2611 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(3359657..3360715) Acidovorax sp. JS42 4672879 YP_987376.1 CDS Ajs_3177 NC_008782.1 3360821 3361582 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: dar:Daro_0141 nitroreductase; cob(II)yrinic acid a,c-diamide reductase complement(3360821..3361582) Acidovorax sp. JS42 4672859 YP_987377.1 CDS Ajs_3178 NC_008782.1 3361850 3363331 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ; adenosylcobyric acid synthase complement(3361850..3363331) Acidovorax sp. JS42 4672850 YP_987378.1 CDS Ajs_3179 NC_008782.1 3363328 3364332 R PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II; aminotransferase complement(3363328..3364332) Acidovorax sp. JS42 4672811 YP_987379.1 CDS Ajs_3180 NC_008782.1 3364325 3365302 R TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rfr:Rfer_2616 cobalamin biosynthesis protein CobD; adenosylcobinamide-phosphate synthase complement(3364325..3365302) Acidovorax sp. JS42 4672661 YP_987380.1 CDS Ajs_3181 NC_008782.1 3365481 3366008 D KEGG: reu:Reut_A0400 prokaryotic N-terminal methylation site; N-terminal methylation site 3365481..3366008 Acidovorax sp. JS42 4672767 YP_987381.1 CDS Ajs_3182 NC_008782.1 3366046 3366630 D KEGG: rso:RS05337 putative type-4 fimbrial pilin related signal peptide protein; putative type-4 fimbrial pilin related signal peptide protein 3366046..3366630 Acidovorax sp. JS42 4672746 YP_987382.1 CDS Ajs_3183 NC_008782.1 3366618 3367091 D TIGRFAM: type IV pilus modification protein PilV; KEGG: lpf:lpl0668 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 3366618..3367091 Acidovorax sp. JS42 4672360 YP_987383.1 CDS Ajs_3184 NC_008782.1 3367122 3368210 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3367122..3368210 Acidovorax sp. JS42 4672329 YP_987384.1 CDS Ajs_3185 NC_008782.1 3368408 3368662 D hypothetical protein 3368408..3368662 Acidovorax sp. JS42 4672297 YP_987385.1 CDS Ajs_3186 NC_008782.1 3368694 3369590 D KEGG: rso:RSc0726 probable transmembrane protein; hypothetical protein 3368694..3369590 Acidovorax sp. JS42 4672280 YP_987386.1 CDS Ajs_3187 NC_008782.1 3369594 3370364 D KEGG: rfr:Rfer_2662 putative transmembrane protein; hypothetical protein 3369594..3370364 Acidovorax sp. JS42 4672226 YP_987387.1 CDS Ajs_3188 NC_008782.1 3370447 3373911 D KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 3370447..3373911 Acidovorax sp. JS42 4672217 YP_987388.1 CDS Ajs_3189 NC_008782.1 3373997 3374485 D KEGG: net:Neut_1832 fimbrial protein pilin; fimbrial protein pilin 3373997..3374485 Acidovorax sp. JS42 4672204 YP_987389.1 CDS Ajs_3190 NC_008782.1 3374521 3375621 D KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase 3374521..3375621 Acidovorax sp. JS42 4672169 YP_987390.1 CDS Ajs_3191 NC_008782.1 3375744 3377474 D PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 3375744..3377474 Acidovorax sp. JS42 4671967 YP_987391.1 CDS Ajs_3192 NC_008782.1 3377434 3378462 R PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS; dihydrouridine synthase complement(3377434..3378462) Acidovorax sp. JS42 4672102 YP_987392.1 CDS Ajs_3193 NC_008782.1 3378540 3379712 R PFAM: methyltransferase small; KEGG: eba:ebA5030 hypothetical protein; methyltransferase small complement(3378540..3379712) Acidovorax sp. JS42 4672070 YP_987393.1 CDS Ajs_3194 NC_008782.1 3379721 3380371 R PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2769 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(3379721..3380371) Acidovorax sp. JS42 4672063 YP_987394.1 CDS Ajs_3195 NC_008782.1 3380400 3381890 R PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase; aldehyde dehydrogenase complement(3380400..3381890) Acidovorax sp. JS42 4671742 YP_987395.1 CDS Ajs_3196 NC_008782.1 3381952 3382356 D PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3381952..3382356 Acidovorax sp. JS42 4671694 YP_987396.1 CDS Ajs_3197 NC_008782.1 3382440 3382745 R KEGG: rfr:Rfer_2034 hypothetical protein; hypothetical protein complement(3382440..3382745) Acidovorax sp. JS42 4671688 YP_987397.1 CDS Ajs_3198 NC_008782.1 3382810 3385413 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2; ATPase complement(3382810..3385413) Acidovorax sp. JS42 4671477 YP_987398.1 CDS Ajs_3199 NC_008782.1 3385482 3385958 R PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE; molybdopterin synthase subunit MoaE complement(3385482..3385958) Acidovorax sp. JS42 4671458 YP_987399.1 CDS Ajs_3200 NC_008782.1 3386025 3386279 D hypothetical protein 3386025..3386279 Acidovorax sp. JS42 4671606 YP_987400.1 CDS Ajs_3201 NC_008782.1 3386611 3386940 D hypothetical protein 3386611..3386940 Acidovorax sp. JS42 4671575 YP_987401.1 CDS Ajs_3202 NC_008782.1 3386947 3387210 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rfr:Rfer_1916 molybdopterin converting factor, subunit 1; molybdopterin synthase subunit MoaD complement(3386947..3387210) Acidovorax sp. JS42 4671044 YP_987402.1 CDS Ajs_3203 NC_008782.1 3387207 3388451 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II; molybdenum cofactor synthesis domain-containing protein complement(3387207..3388451) Acidovorax sp. JS42 4671031 YP_987403.1 CDS Ajs_3204 NC_008782.1 3388448 3388999 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B complement(3388448..3388999) Acidovorax sp. JS42 4671028 YP_987404.1 CDS Ajs_3205 NC_008782.1 3389079 3390509 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(3389079..3390509) Acidovorax sp. JS42 4670982 YP_987405.1 CDS Ajs_3206 NC_008782.1 3390525 3391886 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(3390525..3391886) Acidovorax sp. JS42 4670934 YP_987406.1 CDS Ajs_3207 NC_008782.1 3391957 3393189 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(3391957..3393189) Acidovorax sp. JS42 4670905 YP_987407.1 CDS Ajs_3208 NC_008782.1 3393270 3393716 D PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498; hypothetical protein 3393270..3393716 Acidovorax sp. JS42 4670894 YP_987408.1 CDS Ajs_3209 NC_008782.1 3393882 3394370 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3393882..3394370 Acidovorax sp. JS42 4670524 YP_987409.1 CDS Ajs_3210 NC_008782.1 3394526 3396289 D PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein; PhoH family protein 3394526..3396289 Acidovorax sp. JS42 4670787 YP_987410.1 CDS Ajs_3211 NC_008782.1 3396289 3396654 D KEGG: nmu:Nmul_A1081 hypothetical protein; hypothetical protein 3396289..3396654 Acidovorax sp. JS42 4670770 YP_987411.1 CDS Ajs_3212 NC_008782.1 3396726 3398144 R KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase; primary replicative DNA helicase complement(3396726..3398144) Acidovorax sp. JS42 4670749 YP_987412.1 CDS rplI NC_008782.1 3398326 3398778 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3398326..3398778) Acidovorax sp. JS42 4670695 YP_987413.1 CDS rpsR NC_008782.1 3398793 3399074 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3398793..3399074) Acidovorax sp. JS42 4670507 YP_987414.1 CDS Ajs_3215 NC_008782.1 3399093 3399383 R KEGG: rfr:Rfer_2194 putative primosomal replication protein; putative primosomal replication protein complement(3399093..3399383) Acidovorax sp. JS42 4674308 YP_987415.1 CDS rpsF NC_008782.1 3399409 3399786 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3399409..3399786) Acidovorax sp. JS42 4670622 YP_987416.1 CDS Ajs_3217 NC_008782.1 3400026 3400562 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3400026..3400562 Acidovorax sp. JS42 4670777 YP_987417.1 CDS dnaK NC_008782.1 3400650 3402590 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3400650..3402590 Acidovorax sp. JS42 4670595 YP_987418.1 CDS Ajs_3219 NC_008782.1 3402686 3403816 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3402686..3403816 Acidovorax sp. JS42 4671320 YP_987419.1 CDS Ajs_3220 NC_008782.1 3404007 3405053 D PFAM: peptidase U32; KEGG: rfr:Rfer_0136 peptidase U32; peptidase U32 3404007..3405053 Acidovorax sp. JS42 4671325 YP_987420.1 CDS Ajs_3221 NC_008782.1 3405163 3406065 D PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32; peptidase U32 3405163..3406065 Acidovorax sp. JS42 4670625 YP_987421.1 CDS Ajs_3222 NC_008782.1 3406091 3406609 D KEGG: rfr:Rfer_0134 hypothetical protein; hypothetical protein 3406091..3406609 Acidovorax sp. JS42 4670694 YP_987422.1 CDS Ajs_3223 NC_008782.1 3406606 3407004 D KEGG: bte:BTH_I1807 hypothetical protein; hypothetical protein 3406606..3407004 Acidovorax sp. JS42 4670739 YP_987423.1 CDS Ajs_3224 NC_008782.1 3407001 3407588 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: reu:Reut_A3048 phenylacrylic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 3407001..3407588 Acidovorax sp. JS42 4670891 YP_987424.1 CDS Ajs_3225 NC_008782.1 3407645 3409129 D TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rfr:Rfer_0132 carboxylyase-related protein; 3-octaprenyl-4hydroxybenzoate decarboxylase 3407645..3409129 Acidovorax sp. JS42 4670970 YP_987425.1 CDS Ajs_3226 NC_008782.1 3409193 3410353 D PFAM: cytochrome P450; KEGG: bms:BRA0388 heme-thiolate monooxygenase, putative; cytochrome P450 3409193..3410353 Acidovorax sp. JS42 4671006 YP_987426.1 CDS Ajs_3227 NC_008782.1 3410398 3411762 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rfr:Rfer_1967 beta-lactamase-like; beta-lactamase domain-containing protein 3410398..3411762 Acidovorax sp. JS42 4671071 YP_987427.1 CDS Ajs_3228 NC_008782.1 3411951 3412907 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family; LysR family transcriptional regulator 3411951..3412907 Acidovorax sp. JS42 4671089 YP_987428.1 CDS Ajs_3229 NC_008782.1 3412948 3414369 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3412948..3414369 Acidovorax sp. JS42 4671094 YP_987429.1 CDS Ajs_3230 NC_008782.1 3414383 3414505 D PFAM: Entericidin EcnAB; entericidin EcnAB 3414383..3414505 Acidovorax sp. JS42 4671115 YP_987430.1 CDS Ajs_3231 NC_008782.1 3414538 3414945 D hypothetical protein 3414538..3414945 Acidovorax sp. JS42 4671143 YP_987431.1 CDS leuD NC_008782.1 3414987 3415637 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3414987..3415637 Acidovorax sp. JS42 4671293 YP_987432.1 CDS Ajs_3233 NC_008782.1 3415734 3416807 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3415734..3416807 Acidovorax sp. JS42 4671220 YP_987433.1 CDS Ajs_3234 NC_008782.1 3416971 3417744 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase; short chain dehydrogenase 3416971..3417744 Acidovorax sp. JS42 4671487 YP_987434.1 CDS Ajs_3235 NC_008782.1 3418022 3419152 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 3418022..3419152 Acidovorax sp. JS42 4671905 YP_987435.1 CDS Ajs_3236 NC_008782.1 3419322 3422078 D KEGG: pol:Bpro_3613 putative transmembrane protein; hypothetical protein 3419322..3422078 Acidovorax sp. JS42 4671947 YP_987436.1 CDS truA NC_008782.1 3422149 3422973 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3422149..3422973 Acidovorax sp. JS42 4671559 YP_987437.1 CDS Ajs_3238 NC_008782.1 3422970 3423713 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rfr:Rfer_1789 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 3422970..3423713 Acidovorax sp. JS42 4671465 YP_987438.1 CDS Ajs_3239 NC_008782.1 3423714 3424982 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 3423714..3424982 Acidovorax sp. JS42 4671786 YP_987439.1 CDS trpA NC_008782.1 3424979 3425788 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 3424979..3425788 Acidovorax sp. JS42 4671822 YP_987440.1 CDS Ajs_3241 NC_008782.1 3425849 3426721 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 3425849..3426721 Acidovorax sp. JS42 4671903 YP_987441.1 CDS Ajs_3242 NC_008782.1 3426800 3427348 R PFAM: protein of unknown function YGGT; KEGG: rfr:Rfer_1785 protein of unknown function YGGT; hypothetical protein complement(3426800..3427348) Acidovorax sp. JS42 4671917 YP_987442.1 CDS Ajs_3243 NC_008782.1 3427434 3428081 D PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like; peptidase S16, lon domain-containing protein 3427434..3428081 Acidovorax sp. JS42 4672603 YP_987443.1 CDS Ajs_3244 NC_008782.1 3428088 3429191 D PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1; group 1 glycosyl transferase 3428088..3429191 Acidovorax sp. JS42 4672494 YP_987444.1 CDS Ajs_3245 NC_008782.1 3429188 3430501 D PFAM: sugar transferase; KEGG: rme:Rmet_2718 sugar transferase; sugar transferase 3429188..3430501 Acidovorax sp. JS42 4672083 YP_987445.1 CDS Ajs_3246 NC_008782.1 3430505 3431209 R KEGG: bja:blr2372 hypothetical protein; hypothetical protein complement(3430505..3431209) Acidovorax sp. JS42 4671976 YP_987446.1 CDS Ajs_3247 NC_008782.1 3431240 3432235 D PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1; group 1 glycosyl transferase 3431240..3432235 Acidovorax sp. JS42 4672313 YP_987447.1 CDS Ajs_3248 NC_008782.1 3432229 3433101 D KEGG: bte:BTH_I1358 putative glycosyltransferase; putative glycosyltransferase 3432229..3433101 Acidovorax sp. JS42 4672411 YP_987448.1 CDS Ajs_3249 NC_008782.1 3433119 3434249 D hypothetical protein 3433119..3434249 Acidovorax sp. JS42 4672424 YP_987449.1 CDS lysS NC_008782.1 3434285 3435832 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3434285..3435832 Acidovorax sp. JS42 4672449 YP_987450.1 CDS Ajs_3251 NC_008782.1 3435906 3436931 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dar:Daro_1597 GGDEF; response regulator receiver modulated diguanylate cyclase 3435906..3436931 Acidovorax sp. JS42 4672462 YP_987451.1 CDS Ajs_3252 NC_008782.1 3436966 3437634 D KEGG: pae:PA5251 hypothetical protein; small-conductance mechanosensitive channel-like protein 3436966..3437634 Acidovorax sp. JS42 4672473 YP_987452.1 CDS Ajs_3253 NC_008782.1 3437997 3439118 D PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB2916 leu/ile/val-binding protein precursor; extracellular ligand-binding receptor 3437997..3439118 Acidovorax sp. JS42 4674295 YP_987453.1 CDS Ajs_3254 NC_008782.1 3439220 3440146 D PFAM: inner-membrane translocator; KEGG: bbr:BB2908 high-affinity branched-chain amino acid transport system, permease protein; inner-membrane translocator 3439220..3440146 Acidovorax sp. JS42 4673158 YP_987454.1 CDS livM NC_008782.1 3440146 3441387 D Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease subunit 3440146..3441387 Acidovorax sp. JS42 4673131 YP_987455.1 CDS livG NC_008782.1 3441384 3442151 D Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 3441384..3442151 Acidovorax sp. JS42 4673104 YP_987456.1 CDS Ajs_3257 NC_008782.1 3442151 3442864 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bps:BPSS0579 high-affinity branched-chain amino acid transport ATP-binding protein; ABC transporter-like protein 3442151..3442864 Acidovorax sp. JS42 4672789 YP_987457.1 CDS Ajs_3258 NC_008782.1 3443195 3443515 D KEGG: ddi:DDB0205680 hypothetical protein; hypothetical protein 3443195..3443515 Acidovorax sp. JS42 4672688 YP_987458.1 CDS Ajs_3259 NC_008782.1 3443868 3444320 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: nmu:Nmul_A0996 alkylhydroperoxidase AhpD core; alkylhydroperoxidase complement(3443868..3444320) Acidovorax sp. JS42 4672893 YP_987459.1 CDS Ajs_3260 NC_008782.1 3444551 3445603 R PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily; 6-phosphofructokinase complement(3444551..3445603) Acidovorax sp. JS42 4672956 YP_987460.1 CDS Ajs_3261 NC_008782.1 3445618 3446727 R PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rfr:Rfer_1754 beta-N-acetylhexosaminidase; beta-N-acetylhexosaminidase complement(3445618..3446727) Acidovorax sp. JS42 4673005 YP_987461.1 CDS acpS NC_008782.1 3446786 3447178 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(3446786..3447178) Acidovorax sp. JS42 4673052 YP_987462.1 CDS Ajs_3263 NC_008782.1 3447230 3448009 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(3447230..3448009) Acidovorax sp. JS42 4672738 YP_987463.1 CDS Ajs_3264 NC_008782.1 3448149 3449864 R KEGG: mfa:Mfla_0595 hypothetical protein; hypothetical protein complement(3448149..3449864) Acidovorax sp. JS42 4673081 YP_987464.1 CDS Ajs_3265 NC_008782.1 3450047 3450835 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: rfr:Rfer_1751 DNA repair protein RecO; DNA repair protein RecO complement(3450047..3450835) Acidovorax sp. JS42 4673092 YP_987465.1 CDS Ajs_3266 NC_008782.1 3451089 3452102 R TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: rfr:Rfer_1744 GTP-binding protein Era; GTP-binding protein Era complement(3451089..3452102) Acidovorax sp. JS42 4673114 YP_987466.1 CDS rnc NC_008782.1 3452099 3452785 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(3452099..3452785) Acidovorax sp. JS42 4673936 YP_987467.1 CDS Ajs_3268 NC_008782.1 3452791 3453168 R KEGG: rfr:Rfer_1742 putative transmembrane protein; hypothetical protein complement(3452791..3453168) Acidovorax sp. JS42 4673908 YP_987468.1 CDS Ajs_3269 NC_008782.1 3453196 3454164 R KEGG: rfr:Rfer_1741 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I complement(3453196..3454164) Acidovorax sp. JS42 4673993 YP_987469.1 CDS Ajs_3270 NC_008782.1 3454179 3455987 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3454179..3455987) Acidovorax sp. JS42 4673357 YP_987470.1 CDS Ajs_3271 NC_008782.1 3456428 3457858 R TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_1739 peptidase S1C, Do; protease Do complement(3456428..3457858) Acidovorax sp. JS42 4673502 YP_987471.1 CDS Ajs_3272 NC_008782.1 3457998 3459023 R PFAM: MucB/RseB family protein; KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB; sigma E regulatory protein, MucB/RseB complement(3457998..3459023) Acidovorax sp. JS42 4673669 YP_987472.1 CDS Ajs_3273 NC_008782.1 3459089 3459712 R PFAM: Anti sigma-E protein RseA family protein; KEGG: rfr:Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific; anti sigma-E protein RseA complement(3459089..3459712) Acidovorax sp. JS42 4673750 YP_987473.1 CDS Ajs_3274 NC_008782.1 3459753 3460388 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(3459753..3460388) Acidovorax sp. JS42 4673753 YP_987474.1 CDS Ajs_3275 NC_008782.1 3460385 3460918 R KEGG: rfr:Rfer_1735 hypothetical protein; hypothetical protein complement(3460385..3460918) Acidovorax sp. JS42 4673767 YP_987475.1 CDS Ajs_3276 NC_008782.1 3461010 3462254 R PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_1734 beta-ketoacyl synthase; 3-oxoacyl-[acyl-carrier-protein] synthase II complement(3461010..3462254) Acidovorax sp. JS42 4673796 YP_987476.1 CDS acpP NC_008782.1 3462312 3462551 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(3462312..3462551) Acidovorax sp. JS42 4673837 YP_987477.1 CDS Ajs_3278 NC_008782.1 3462655 3463395 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1732 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-[acyl-carrier-protein] reductase complement(3462655..3463395) Acidovorax sp. JS42 4674093 YP_987478.1 CDS Ajs_3279 NC_008782.1 3463392 3464360 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase; [acyl-carrier-protein] S-malonyltransferase complement(3463392..3464360) Acidovorax sp. JS42 4671491 YP_987479.1 CDS Ajs_3280 NC_008782.1 3464402 3465379 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(3464402..3465379) Acidovorax sp. JS42 4674578 YP_987480.1 CDS Ajs_3281 NC_008782.1 3465398 3466429 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(3465398..3466429) Acidovorax sp. JS42 4674651 YP_987481.1 CDS rpmF NC_008782.1 3466552 3466734 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(3466552..3466734) Acidovorax sp. JS42 4674649 YP_987482.1 CDS Ajs_3283 NC_008782.1 3466867 3467418 R PFAM: protein of unknown function DUF177; KEGG: rfr:Rfer_1727 protein of unknown function DUF177; hypothetical protein complement(3466867..3467418) Acidovorax sp. JS42 4674632 YP_987483.1 CDS Ajs_3284 NC_008782.1 3467445 3468044 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein; maf protein 3467445..3468044 Acidovorax sp. JS42 4674613 YP_987484.1 CDS Ajs_3285 NC_008782.1 3468041 3468847 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3655 putative transmembrane protein; uroporphyrin-III C/tetrapyrrole methyltransferase 3468041..3468847 Acidovorax sp. JS42 4674561 YP_987485.1 CDS Ajs_3286 NC_008782.1 3468932 3469975 R PFAM: peptidase S49; KEGG: rfr:Rfer_1724 peptidase S49; peptidase S49 complement(3468932..3469975) Acidovorax sp. JS42 4674532 YP_987486.1 CDS Ajs_3287 NC_008782.1 3469980 3470357 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(3469980..3470357) Acidovorax sp. JS42 4674497 YP_987487.1 CDS Ajs_3288 NC_008782.1 3470357 3471025 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD family hydrolase complement(3470357..3471025) Acidovorax sp. JS42 4674461 YP_987488.1 CDS Ajs_3290 NC_008782.1 3472626 3475703 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family; ribonuclease E 3472626..3475703 Acidovorax sp. JS42 4674318 YP_987489.1 CDS Ajs_3291 NC_008782.1 3475845 3476633 D PFAM: protein of unknown function DUF328; KEGG: rfr:Rfer_2372 protein of unknown function DUF328; hypothetical protein 3475845..3476633 Acidovorax sp. JS42 4674234 YP_987490.1 CDS Ajs_3292 NC_008782.1 3476665 3477051 D hypothetical protein 3476665..3477051 Acidovorax sp. JS42 4674173 YP_987491.1 CDS Ajs_3293 NC_008782.1 3477074 3477943 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3712 procollagen-proline, 2-oxoglutarate-4-dioxygenase; 2OG-Fe(II) oxygenase 3477074..3477943 Acidovorax sp. JS42 4673306 YP_987492.1 CDS queF NC_008782.1 3478002 3478847 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 3478002..3478847 Acidovorax sp. JS42 4673296 YP_987493.1 CDS Ajs_3295 NC_008782.1 3478963 3480522 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: rfr:Rfer_0120 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; methyl-accepting chemotaxis sensory transducer complement(3478963..3480522) Acidovorax sp. JS42 4673278 YP_987494.1 CDS Ajs_3296 NC_008782.1 3480660 3481859 R PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_2353 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(3480660..3481859) Acidovorax sp. JS42 4673269 YP_987495.1 CDS Ajs_3297 NC_008782.1 3482034 3482969 R KEGG: nha:Nham_0475 hypothetical protein; hypothetical protein complement(3482034..3482969) Acidovorax sp. JS42 4673255 YP_987496.1 CDS Ajs_3298 NC_008782.1 3483127 3484299 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome); (S)-2-hydroxy-acid oxidase complement(3483127..3484299) Acidovorax sp. JS42 4673225 YP_987497.1 CDS Ajs_3299 NC_008782.1 3484522 3486798 R TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: reu:Reut_A3383 penicillin-binding protein 1C; penicillin-binding protein 1C complement(3484522..3486798) Acidovorax sp. JS42 4672976 YP_987498.1 CDS Ajs_3300 NC_008782.1 3486770 3487642 R KEGG: bbr:BB2283 hypothetical protein; hypothetical protein complement(3486770..3487642) Acidovorax sp. JS42 4672898 YP_987499.1 CDS Ajs_3301 NC_008782.1 3487721 3488098 R PFAM: protein of unknown function DUF1232; KEGG: gme:Gmet_2189 protein of unknown function DUF1232; hypothetical protein complement(3487721..3488098) Acidovorax sp. JS42 4672676 YP_987500.1 CDS Ajs_3302 NC_008782.1 3488243 3488458 D KEGG: bps:BPSS1335 hypothetical protein; hypothetical protein 3488243..3488458 Acidovorax sp. JS42 4672699 YP_987501.1 CDS Ajs_3303 NC_008782.1 3488471 3489346 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein; endonuclease/exonuclease/phosphatase complement(3488471..3489346) Acidovorax sp. JS42 4672687 YP_987502.1 CDS Ajs_3304 NC_008782.1 3489417 3490238 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4935 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport systems inner membrane component complement(3489417..3490238) Acidovorax sp. JS42 4672748 YP_987503.1 CDS Ajs_3305 NC_008782.1 3490386 3491288 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4934 inner membrane component of binding-protein-dependent transport system; binding-protein-dependent transport systems inner membrane component complement(3490386..3491288) Acidovorax sp. JS42 4672332 YP_987504.1 CDS Ajs_3306 NC_008782.1 3491302 3492597 R PFAM: extracellular solute-binding protein, family 1; KEGG: bbr:BB4933 probable extracellular solute-binding protein; extracellular solute-binding protein complement(3491302..3492597) Acidovorax sp. JS42 4672016 YP_987505.1 CDS Ajs_3307 NC_008782.1 3492691 3493731 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bpe:BP0122 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein complement(3492691..3493731) Acidovorax sp. JS42 4672238 YP_987506.1 CDS Ajs_3308 NC_008782.1 3494055 3496151 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bps:BPSS1310 putative BCCT (betaine/carnitine/choline) family transporter; choline/carnitine/betaine transporter complement(3494055..3496151) Acidovorax sp. JS42 4672196 YP_987507.1 CDS Ajs_3309 NC_008782.1 3496696 3502764 R PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal; alpha-2-macroglobulin domain-containing protein complement(3496696..3502764) Acidovorax sp. JS42 4671973 YP_987508.1 CDS Ajs_3310 NC_008782.1 3502946 3505054 D PFAM: Catalase domain protein; KEGG: xac:XAC1211 catalase; catalase 3502946..3505054 Acidovorax sp. JS42 4671474 YP_987509.1 CDS Ajs_3311 NC_008782.1 3505133 3506107 R PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065; hypothetical protein complement(3505133..3506107) Acidovorax sp. JS42 4671444 YP_987510.1 CDS Ajs_3312 NC_008782.1 3506241 3507701 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(3506241..3507701) Acidovorax sp. JS42 4671568 YP_987511.1 CDS Ajs_3313 NC_008782.1 3507751 3508818 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: rfr:Rfer_1711 histidine kinase internal protein; histidine kinase 3507751..3508818 Acidovorax sp. JS42 4671554 YP_987512.1 CDS Ajs_3314 NC_008782.1 3508865 3509617 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family; LytR/AlgR family transcriptional regulator 3508865..3509617 Acidovorax sp. JS42 4670868 YP_987513.1 CDS Ajs_3315 NC_008782.1 3509772 3510602 R PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease; zinc/iron permease complement(3509772..3510602) Acidovorax sp. JS42 4670829 YP_987514.1 CDS Ajs_3316 NC_008782.1 3510721 3511614 R PFAM: dienelactone hydrolase; KEGG: pol:Bpro_1733 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(3510721..3511614) Acidovorax sp. JS42 4670516 YP_987515.1 CDS Ajs_3317 NC_008782.1 3511764 3514532 R KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(3511764..3514532) Acidovorax sp. JS42 4670632 YP_987516.1 CDS Ajs_3318 NC_008782.1 3514675 3515091 D hypothetical protein 3514675..3515091 Acidovorax sp. JS42 4674589 YP_987517.1 CDS Ajs_3319 NC_008782.1 3515128 3515496 D KEGG: pol:Bpro_1728 hypothetical protein; hypothetical protein 3515128..3515496 Acidovorax sp. JS42 4674705 YP_987518.1 CDS Ajs_3320 NC_008782.1 3515588 3516538 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 3515588..3516538 Acidovorax sp. JS42 4670583 YP_987519.1 CDS Ajs_3321 NC_008782.1 3516689 3517516 D KEGG: pol:Bpro_1726 hypothetical protein; hypothetical protein 3516689..3517516 Acidovorax sp. JS42 4671228 YP_987520.1 CDS Ajs_3322 NC_008782.1 3517815 3518486 R PFAM: OmpA/MotB domain protein; KEGG: gvi:glr1828 probable outer membrane protein; OmpA/MotB domain-containing protein complement(3517815..3518486) Acidovorax sp. JS42 4670620 YP_987521.1 CDS Ajs_3323 NC_008782.1 3518486 3519094 R KEGG: gvi:glr1827 unknown protein; hypothetical protein complement(3518486..3519094) Acidovorax sp. JS42 4670645 YP_987522.1 CDS Ajs_3324 NC_008782.1 3519378 3521828 R PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase; ATP-dependent DNA helicase UvrD complement(3519378..3521828) Acidovorax sp. JS42 4670774 YP_987523.1 CDS Ajs_3325 NC_008782.1 3521932 3522600 D KEGG: rfr:Rfer_3036 hypothetical protein; hypothetical protein 3521932..3522600 Acidovorax sp. JS42 4670790 YP_987524.1 CDS Ajs_3326 NC_008782.1 3522792 3523769 D TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: rfr:Rfer_3037 guanosine monophosphate reductase; guanosine 5'-monophosphate oxidoreductase 3522792..3523769 Acidovorax sp. JS42 4670813 YP_987525.1 CDS Ajs_3327 NC_008782.1 3524913 3525644 R hypothetical protein complement(3524913..3525644) Acidovorax sp. JS42 4670938 YP_987526.1 CDS Ajs_3328 NC_008782.1 3525699 3526145 R hypothetical protein complement(3525699..3526145) Acidovorax sp. JS42 4671053 YP_987527.1 CDS Ajs_3329 NC_008782.1 3526296 3526607 R KEGG: son:SO4261 hypothetical protein; hypothetical protein complement(3526296..3526607) Acidovorax sp. JS42 4671054 YP_987528.1 CDS Ajs_3330 NC_008782.1 3526618 3527085 R hypothetical protein complement(3526618..3527085) Acidovorax sp. JS42 4671063 YP_987529.1 CDS Ajs_3331 NC_008782.1 3527572 3528660 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3527572..3528660 Acidovorax sp. JS42 4671107 YP_987530.1 CDS Ajs_3332 NC_008782.1 3528800 3529222 R KEGG: bps:BPSL1146 hypothetical protein; hypothetical protein complement(3528800..3529222) Acidovorax sp. JS42 4671150 YP_987531.1 CDS Ajs_3333 NC_008782.1 3529215 3529529 R hypothetical protein complement(3529215..3529529) Acidovorax sp. JS42 4674215 YP_987532.1 CDS Ajs_3334 NC_008782.1 3529526 3530113 R hypothetical protein complement(3529526..3530113) Acidovorax sp. JS42 4670586 YP_987533.1 CDS Ajs_3335 NC_008782.1 3530091 3530276 R KEGG: eba:ebD32 hypothetical protein; hypothetical protein complement(3530091..3530276) Acidovorax sp. JS42 4671639 YP_987534.1 CDS Ajs_3336 NC_008782.1 3530276 3530521 R KEGG: pol:Bpro_1532 hypothetical protein; hypothetical protein complement(3530276..3530521) Acidovorax sp. JS42 4671685 YP_987535.1 CDS Ajs_3337 NC_008782.1 3530670 3531491 R hypothetical protein complement(3530670..3531491) Acidovorax sp. JS42 4671686 YP_987536.1 CDS Ajs_3338 NC_008782.1 3531593 3531874 R KEGG: bbr:BB1688 hypothetical protein; hypothetical protein complement(3531593..3531874) Acidovorax sp. JS42 4671749 YP_987537.1 CDS Ajs_3339 NC_008782.1 3531861 3532139 R PFAM: protein of unknown function DUF497; KEGG: bbr:BB1689 hypothetical protein; hypothetical protein complement(3531861..3532139) Acidovorax sp. JS42 4671509 YP_987538.1 CDS Ajs_3340 NC_008782.1 3532196 3533554 R PFAM: phage integrase family protein; KEGG: bcn:Bcen_0845 phage integrase; phage integrase family protein complement(3532196..3533554) Acidovorax sp. JS42 4671826 YP_987539.1 CDS Ajs_3341 NC_008782.1 3534001 3534666 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: eca:ECA1829 putative Crp/Fnr-family of transcriptional regulator; Crp/FNR family transcriptional regulator 3534001..3534666 Acidovorax sp. JS42 4671913 YP_987540.1 CDS Ajs_3342 NC_008782.1 3534690 3535136 D KEGG: rfr:Rfer_0616 hypothetical protein; hypothetical protein 3534690..3535136 Acidovorax sp. JS42 4671878 YP_987541.1 CDS Ajs_3343 NC_008782.1 3535230 3535718 D PFAM: protein of unknown function DUF461; KEGG: eba:ebA6147 hypothetical protein; hypothetical protein 3535230..3535718 Acidovorax sp. JS42 4674354 YP_987542.1 CDS Ajs_3344 NC_008782.1 3535899 3537134 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 3535899..3537134 Acidovorax sp. JS42 4674340 YP_987543.1 CDS Ajs_3345 NC_008782.1 3537411 3539288 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein complement(3537411..3539288) Acidovorax sp. JS42 4674096 YP_987544.1 CDS Ajs_3346 NC_008782.1 3539571 3540149 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(3539571..3540149) Acidovorax sp. JS42 4674185 YP_987545.1 CDS Ajs_3347 NC_008782.1 3540188 3541501 D PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase; Ste24 endopeptidase 3540188..3541501 Acidovorax sp. JS42 4672528 YP_987546.1 CDS Ajs_3348 NC_008782.1 3541498 3541836 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase 3541498..3541836 Acidovorax sp. JS42 4672592 YP_987547.1 CDS Ajs_3349 NC_008782.1 3541841 3542809 D TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rfr:Rfer_1409 GTPase EngC; ribosome small subunit-dependent GTPase A 3541841..3542809 Acidovorax sp. JS42 4672075 YP_987548.1 CDS Ajs_3350 NC_008782.1 3542875 3543861 R PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_1695 hypothetical protein; cobalamin biosynthesis protein CbiB complement(3542875..3543861) Acidovorax sp. JS42 4671919 YP_987549.1 CDS Ajs_3351 NC_008782.1 3543940 3544674 R PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1406 NUDIX hydrolase; NUDIX hydrolase complement(3543940..3544674) Acidovorax sp. JS42 4671891 YP_987550.1 CDS rplS NC_008782.1 3544742 3545125 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(3544742..3545125) Acidovorax sp. JS42 4672134 YP_987551.1 CDS trmD NC_008782.1 3545239 3546006 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(3545239..3546006) Acidovorax sp. JS42 4672279 YP_987552.1 CDS rimM NC_008782.1 3546025 3546654 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(3546025..3546654) Acidovorax sp. JS42 4672345 YP_987553.1 CDS rpsP NC_008782.1 3546686 3546937 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(3546686..3546937) Acidovorax sp. JS42 4672359 YP_987554.1 CDS Ajs_3356 NC_008782.1 3547065 3547586 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3547065..3547586 Acidovorax sp. JS42 4672369 YP_987555.1 CDS Ajs_3357 NC_008782.1 3547609 3548055 D KEGG: rfr:Rfer_1400 hypothetical protein; hypothetical protein 3547609..3548055 Acidovorax sp. JS42 4672373 YP_987556.1 CDS Ajs_3358 NC_008782.1 3548192 3549202 R PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter; phosphate transporter complement(3548192..3549202) Acidovorax sp. JS42 4672038 YP_987557.1 CDS Ajs_3359 NC_008782.1 3549262 3549909 R PFAM: protein of unknown function DUF47; KEGG: rfr:Rfer_1398 protein of unknown function DUF47; hypothetical protein complement(3549262..3549909) Acidovorax sp. JS42 4672400 YP_987558.1 CDS Ajs_3360 NC_008782.1 3550081 3550443 R PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486; hypothetical protein complement(3550081..3550443) Acidovorax sp. JS42 4672593 YP_987559.1 CDS Ajs_3361 NC_008782.1 3550563 3551291 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related; ABC transporter-like protein complement(3550563..3551291) Acidovorax sp. JS42 4672707 YP_987560.1 CDS Ajs_3362 NC_008782.1 3551304 3552086 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3170 ABC transporter related; ABC transporter-like protein complement(3551304..3552086) Acidovorax sp. JS42 4672538 YP_987561.1 CDS Ajs_3363 NC_008782.1 3552108 3553184 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3171 inner-membrane translocator; inner-membrane translocator complement(3552108..3553184) Acidovorax sp. JS42 4672808 YP_987562.1 CDS Ajs_3364 NC_008782.1 3553198 3554127 R PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3172 inner-membrane translocator; inner-membrane translocator complement(3553198..3554127) Acidovorax sp. JS42 4672815 YP_987563.1 CDS Ajs_3365 NC_008782.1 3554484 3555812 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3176 AAA ATPase; recombination factor protein RarA complement(3554484..3555812) Acidovorax sp. JS42 4672865 YP_987564.1 CDS Ajs_3366 NC_008782.1 3555809 3556807 R TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: tbd:Tbd_1215 integron integrase; integron integrase complement(3555809..3556807) Acidovorax sp. JS42 4672911 YP_987565.1 CDS Ajs_3367 NC_008782.1 3556965 3557945 D PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3556965..3557945 Acidovorax sp. JS42 4672958 YP_987566.1 CDS Ajs_3368 NC_008782.1 3558135 3558434 D PFAM: protein of unknown function DUF1010; hypothetical protein 3558135..3558434 Acidovorax sp. JS42 4673012 YP_987567.1 CDS Ajs_3369 NC_008782.1 3558444 3558713 D hypothetical protein 3558444..3558713 Acidovorax sp. JS42 4673020 YP_987568.1 CDS Ajs_3370 NC_008782.1 3559013 3560239 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3559013..3560239 Acidovorax sp. JS42 4673044 YP_987569.1 CDS Ajs_3371 NC_008782.1 3560381 3560638 D hypothetical protein 3560381..3560638 Acidovorax sp. JS42 4673063 YP_987570.1 CDS Ajs_3372 NC_008782.1 3560707 3560952 D PFAM: protein of unknown function DUF1010; hypothetical protein 3560707..3560952 Acidovorax sp. JS42 4674525 YP_987571.1 CDS Ajs_3373 NC_008782.1 3560969 3561250 D PFAM: protein of unknown function DUF1010; hypothetical protein 3560969..3561250 Acidovorax sp. JS42 4673140 YP_987572.1 CDS Ajs_3374 NC_008782.1 3561462 3562688 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3561462..3562688 Acidovorax sp. JS42 4673161 YP_987573.1 CDS Ajs_3377 NC_008782.1 3563865 3565091 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein complement(3563865..3565091) Acidovorax sp. JS42 4673363 YP_987574.1 CDS Ajs_3378 NC_008782.1 3565486 3566712 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein complement(3565486..3566712) Acidovorax sp. JS42 4673467 YP_987575.1 CDS Ajs_3379 NC_008782.1 3567122 3567511 D KEGG: eba:ebA2554 hypothetical protein; hypothetical protein 3567122..3567511 Acidovorax sp. JS42 4673487 YP_987576.1 CDS Ajs_3380 NC_008782.1 3567511 3568176 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: bte:BTH_II0381 uracil DNA glycosylase superfamily superfamily; uracil-DNA glycosylase superfamily protein 3567511..3568176 Acidovorax sp. JS42 4673497 YP_987577.1 CDS Ajs_3381 NC_008782.1 3568237 3568869 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(3568237..3568869) Acidovorax sp. JS42 4673576 YP_987578.1 CDS Ajs_3382 NC_008782.1 3568931 3571261 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE; DNA translocase FtsK complement(3568931..3571261) Acidovorax sp. JS42 4673580 YP_987579.1 CDS Ajs_3383 NC_008782.1 3571554 3572507 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3179 thioredoxin reductase; thioredoxin reductase 3571554..3572507 Acidovorax sp. JS42 4673638 YP_987580.1 CDS rpmB NC_008782.1 3572741 3572974 D required for 70S ribosome assembly; 50S ribosomal protein L28 3572741..3572974 Acidovorax sp. JS42 4673714 YP_987581.1 CDS rpmG NC_008782.1 3572995 3573165 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3572995..3573165 Acidovorax sp. JS42 4673719 YP_987582.1 CDS Ajs_3386 NC_008782.1 3573304 3574515 R PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase; fatty acid desaturase complement(3573304..3574515) Acidovorax sp. JS42 4673914 YP_987583.1 CDS Ajs_3387 NC_008782.1 3574648 3575925 R PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3183 Fmu (Sun); Fmu (Sun) domain-containing protein complement(3574648..3575925) Acidovorax sp. JS42 4673989 YP_987584.1 CDS Ajs_3388 NC_008782.1 3575969 3577906 R PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p; peptidase M48, Ste24p complement(3575969..3577906) Acidovorax sp. JS42 4673855 YP_987585.1 CDS Ajs_3389 NC_008782.1 3577948 3578205 D PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653; hypothetical protein 3577948..3578205 Acidovorax sp. JS42 4673954 YP_987586.1 CDS Ajs_3390 NC_008782.1 3578414 3578971 D KEGG: tbd:Tbd_2249 hypothetical protein; hypothetical protein 3578414..3578971 Acidovorax sp. JS42 4674002 YP_987587.1 CDS purN NC_008782.1 3579036 3579620 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(3579036..3579620) Acidovorax sp. JS42 4673865 YP_987588.1 CDS Ajs_3392 NC_008782.1 3579644 3580321 D PFAM: protein of unknown function DUF480; KEGG: rfr:Rfer_1648 protein of unknown function DUF480; hypothetical protein 3579644..3580321 Acidovorax sp. JS42 4674115 YP_987589.1 CDS Ajs_3393 NC_008782.1 3580409 3581590 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3580409..3581590 Acidovorax sp. JS42 4674124 YP_987590.1 CDS Ajs_3394 NC_008782.1 3581603 3582718 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_1645 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein 3581603..3582718 Acidovorax sp. JS42 4674148 YP_987591.1 CDS Ajs_3395 NC_008782.1 3583117 3584103 D PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein 3583117..3584103 Acidovorax sp. JS42 4674098 YP_987592.1 CDS Ajs_3396 NC_008782.1 3584263 3585582 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC4125 hypothetical protein; type 12 methyltransferase 3584263..3585582 Acidovorax sp. JS42 4674110 YP_987593.1 CDS Ajs_3397 NC_008782.1 3585646 3586203 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease; HNH endonuclease complement(3585646..3586203) Acidovorax sp. JS42 4674100 YP_987594.1 CDS Ajs_3398 NC_008782.1 3586366 3587409 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 3586366..3587409 Acidovorax sp. JS42 4674077 YP_987595.1 CDS Ajs_3399 NC_008782.1 3587524 3590379 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 3587524..3590379 Acidovorax sp. JS42 4674091 YP_987596.1 CDS lspA NC_008782.1 3590379 3590876 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 3590379..3590876 Acidovorax sp. JS42 4674083 YP_987597.1 CDS Ajs_3401 NC_008782.1 3590971 3592641 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related; Na/Pi-cotransporter II-like protein 3590971..3592641 Acidovorax sp. JS42 4674067 YP_987598.1 CDS Ajs_3402 NC_008782.1 3592632 3593621 R KEGG: pae:PA2026 conserved hypothetical protein; hypothetical protein complement(3592632..3593621) Acidovorax sp. JS42 4674052 YP_987599.1 CDS Ajs_3403 NC_008782.1 3594079 3595305 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3594079..3595305 Acidovorax sp. JS42 4674031 YP_987600.1 CDS Ajs_3404 NC_008782.1 3595453 3596274 R PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3852 NUDIX hydrolase; NUDIX hydrolase complement(3595453..3596274) Acidovorax sp. JS42 4674707 YP_987601.1 CDS Ajs_3406 NC_008782.1 3597389 3598291 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane; hypothetical protein 3597389..3598291 Acidovorax sp. JS42 4674670 YP_987602.1 CDS Ajs_3408 NC_008782.1 3601000 3602082 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1428 putative transport protein; TRAP dicarboxylate transporter subunit DctP complement(3601000..3602082) Acidovorax sp. JS42 4674642 YP_987603.1 CDS Ajs_3410 NC_008782.1 3602540 3603628 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3602540..3603628 Acidovorax sp. JS42 4674624 YP_987604.1 CDS Ajs_3411 NC_008782.1 3605044 3606555 R PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane; hypothetical protein complement(3605044..3606555) Acidovorax sp. JS42 4674621 YP_987605.1 CDS Ajs_3412 NC_008782.1 3606572 3607060 R PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468; hypothetical protein complement(3606572..3607060) Acidovorax sp. JS42 4674615 YP_987606.1 CDS Ajs_3413 NC_008782.1 3607362 3609158 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E; type II secretion system protein E complement(3607362..3609158) Acidovorax sp. JS42 4674607 YP_987607.1 CDS Ajs_3414 NC_008782.1 3609179 3609940 R KEGG: rfr:Rfer_3215 hypothetical protein; hypothetical protein complement(3609179..3609940) Acidovorax sp. JS42 4674608 YP_987608.1 CDS Ajs_3415 NC_008782.1 3609945 3610568 R KEGG: rfr:Rfer_3216 hypothetical protein; hypothetical protein complement(3609945..3610568) Acidovorax sp. JS42 4674599 YP_987609.1 CDS Ajs_3416 NC_008782.1 3610575 3611420 R PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_3221 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(3610575..3611420) Acidovorax sp. JS42 4674602 YP_987610.1 CDS Ajs_3417 NC_008782.1 3611530 3611727 R KEGG: rfr:Rfer_0021 hypothetical protein; hypothetical protein complement(3611530..3611727) Acidovorax sp. JS42 4674323 YP_987611.1 CDS Ajs_3418 NC_008782.1 3611783 3612091 R PFAM: regulatory protein, MarR; regulatory protein, ArsR; transcriptional regulator TrmB; KEGG: eca:ECA3780 ArsR-family transcriptional regulator; ArsR family transcriptional regulator complement(3611783..3612091) Acidovorax sp. JS42 4674591 YP_987612.1 CDS Ajs_3419 NC_008782.1 3612205 3612576 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_2368 alkylhydroperoxidase AhpD core; alkylhydroperoxidase 3612205..3612576 Acidovorax sp. JS42 4674596 YP_987613.1 CDS Ajs_3420 NC_008782.1 3612632 3613312 R KEGG: pol:Bpro_1015 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system ATP-binding protein complement(3612632..3613312) Acidovorax sp. JS42 4674593 YP_987614.1 CDS Ajs_3421 NC_008782.1 3613305 3614558 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(3613305..3614558) Acidovorax sp. JS42 4674588 YP_987615.1 CDS Ajs_3422 NC_008782.1 3614696 3615886 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(3614696..3615886) Acidovorax sp. JS42 4674579 YP_987616.1 CDS Ajs_3423 NC_008782.1 3616003 3616959 D KEGG: rfr:Rfer_3233 hypothetical protein; hypothetical protein 3616003..3616959 Acidovorax sp. JS42 4674567 YP_987617.1 CDS Ajs_3424 NC_008782.1 3616956 3618680 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rfr:Rfer_3234 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 3616956..3618680 Acidovorax sp. JS42 4674555 YP_987618.1 CDS Ajs_3425 NC_008782.1 3618775 3619077 D KEGG: eca:ECA4460 putative lipoprotein; putative lipoprotein 3618775..3619077 Acidovorax sp. JS42 4674514 YP_987619.1 CDS Ajs_3426 NC_008782.1 3619206 3620186 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(3619206..3620186) Acidovorax sp. JS42 4674539 YP_987620.1 CDS Ajs_3428 NC_008782.1 3620641 3621018 D KEGG: bte:BTH_I3205 hypothetical protein; hypothetical protein 3620641..3621018 Acidovorax sp. JS42 4674432 YP_987621.1 CDS Ajs_3429 NC_008782.1 3621015 3621689 D PFAM: protein of unknown function DUF799; KEGG: psp:PSPPH_1127 lipoprotein, putative; hypothetical protein 3621015..3621689 Acidovorax sp. JS42 4674527 YP_987622.1 CDS Ajs_3430 NC_008782.1 3621796 3623550 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3621796..3623550) Acidovorax sp. JS42 4674511 YP_987623.1 CDS Ajs_3431 NC_008782.1 3623754 3624632 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like; phosphotransferase domain-containing protein 3623754..3624632 Acidovorax sp. JS42 4674499 YP_987624.1 CDS Ajs_3432 NC_008782.1 3624648 3625283 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: rfr:Rfer_3238 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein 3624648..3625283 Acidovorax sp. JS42 4674476 YP_987625.1 CDS Ajs_3433 NC_008782.1 3625408 3627477 R PFAM: von Willebrand factor, type A; KEGG: nmu:Nmul_A1253 von Willebrand factor, type A; von Willebrand factor, type A complement(3625408..3627477) Acidovorax sp. JS42 4674446 YP_987626.1 CDS Ajs_3434 NC_008782.1 3627480 3628283 R PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: nmu:Nmul_A1254 ATPase associated with various cellular activities, AAA_5; ATPase complement(3627480..3628283) Acidovorax sp. JS42 4674444 YP_987627.1 CDS Ajs_3435 NC_008782.1 3628303 3629676 R PFAM: cytochrome c oxidase, subunit I; KEGG: tbd:Tbd_0823 nitric-oxide reductase subunit B; cytochrome c oxidase subunit I complement(3628303..3629676) Acidovorax sp. JS42 4674443 YP_987628.1 CDS Ajs_3436 NC_008782.1 3629707 3630579 R PFAM: cytochrome c, class I; KEGG: tbd:Tbd_0822 nitric oxide reductase, cytochrome c-containing subunit; class I cytochrome c complement(3629707..3630579) Acidovorax sp. JS42 4674427 YP_987629.1 CDS Ajs_3437 NC_008782.1 3630852 3631538 D PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50; peptidase M50 3630852..3631538 Acidovorax sp. JS42 4674413 YP_987630.1 CDS Ajs_3438 NC_008782.1 3631563 3632867 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3631563..3632867 Acidovorax sp. JS42 4674398 YP_987631.1 CDS Ajs_3439 NC_008782.1 3633155 3633439 D hypothetical protein 3633155..3633439 Acidovorax sp. JS42 4674396 YP_987632.1 CDS Ajs_3441 NC_008782.1 3634290 3635516 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 3634290..3635516 Acidovorax sp. JS42 4674362 YP_987633.1 CDS Ajs_3442 NC_008782.1 3636367 3637131 R PFAM: EAL domain protein; KEGG: pfl:PFL_0280 EAL domain protein; diguanylate phosphodiesterase complement(3636367..3637131) Acidovorax sp. JS42 4674360 YP_987634.1 CDS Ajs_3444 NC_008782.1 3637389 3637955 D KEGG: net:Neut_0367 hypothetical protein; hypothetical protein 3637389..3637955 Acidovorax sp. JS42 4674359 YP_987635.1 CDS Ajs_3445 NC_008782.1 3638504 3639832 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3638504..3639832) Acidovorax sp. JS42 4674357 YP_987636.1 CDS Ajs_3446 NC_008782.1 3639965 3640645 D PFAM: CBS domain containing protein; KEGG: rfr:Rfer_1632 CBS domain containing membrane protein; signal transduction protein 3639965..3640645 Acidovorax sp. JS42 4674291 YP_987637.1 CDS Ajs_3447 NC_008782.1 3640649 3641971 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rme:Rmet_4765 protein of unknown function DUF21; hypothetical protein complement(3640649..3641971) Acidovorax sp. JS42 4674329 YP_987638.1 CDS ispH NC_008782.1 3642221 3643216 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(3642221..3643216) Acidovorax sp. JS42 4674325 YP_987639.1 CDS Ajs_3449 NC_008782.1 3643230 3643607 R KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(3643230..3643607) Acidovorax sp. JS42 4674319 YP_987640.1 CDS radC NC_008782.1 3643789 3644505 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3643789..3644505 Acidovorax sp. JS42 4674175 YP_987641.1 CDS Ajs_3451 NC_008782.1 3644502 3645716 D KEGG: gvi:gll2885 hypothetical protein; hypothetical protein 3644502..3645716 Acidovorax sp. JS42 4674305 YP_987642.1 CDS Ajs_3452 NC_008782.1 3645689 3646372 D PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2; Smr protein/MutS2 3645689..3646372 Acidovorax sp. JS42 4674158 YP_987643.1 CDS Ajs_3453 NC_008782.1 3646507 3648588 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bte:BTH_I0372 2',3'-cyclic-nucleotide 2'-phosphodiesterase; 5'-nucleotidase domain-containing protein complement(3646507..3648588) Acidovorax sp. JS42 4674312 YP_987644.1 CDS Ajs_3454 NC_008782.1 3648727 3649152 R PFAM: globin; KEGG: pol:Bpro_0945 globin; globin complement(3648727..3649152) Acidovorax sp. JS42 4674303 YP_987645.1 CDS Ajs_3455 NC_008782.1 3649189 3649641 R PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(3649189..3649641) Acidovorax sp. JS42 4674298 YP_987646.1 CDS Ajs_3456 NC_008782.1 3649619 3651190 R KEGG: nmu:Nmul_A0912 hypothetical protein; hypothetical protein complement(3649619..3651190) Acidovorax sp. JS42 4674014 YP_987647.1 CDS Ajs_3457 NC_008782.1 3651236 3651463 R hypothetical protein complement(3651236..3651463) Acidovorax sp. JS42 4674106 YP_987648.1 CDS Ajs_3458 NC_008782.1 3651472 3654045 R PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3255 protein of unknown function DUF214; hypothetical protein complement(3651472..3654045) Acidovorax sp. JS42 4674045 YP_987649.1 CDS Ajs_3459 NC_008782.1 3654119 3655009 R PFAM: formate dehydrogenase, subunit FdhD; KEGG: rfr:Rfer_3256 formate dehydrogenase, subunit FdhD; formate dehydrogenase subunit FdhD complement(3654119..3655009) Acidovorax sp. JS42 4674019 YP_987650.1 CDS Ajs_3460 NC_008782.1 3655126 3655518 R KEGG: pol:Bpro_0941 hypothetical protein; hypothetical protein complement(3655126..3655518) Acidovorax sp. JS42 4674054 YP_987651.1 CDS Ajs_3461 NC_008782.1 3655515 3656720 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bbr:BB2124 formate dehydrogenase subunit C precursor; formate dehydrogenase subunit gamma complement(3655515..3656720) Acidovorax sp. JS42 4674079 YP_987652.1 CDS Ajs_3462 NC_008782.1 3656734 3656967 R KEGG: pol:Bpro_0939 putative lipoprotein; putative lipoprotein complement(3656734..3656967) Acidovorax sp. JS42 4674281 YP_987653.1 CDS Ajs_3463 NC_008782.1 3656964 3657584 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin complement(3656964..3657584) Acidovorax sp. JS42 4674296 YP_987654.1 CDS Ajs_3464 NC_008782.1 3657595 3660564 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3261 twin-arginine translocation pathway signal; molybdopterin oxidoreductase complement(3657595..3660564) Acidovorax sp. JS42 4674287 YP_987655.1 CDS Ajs_3465 NC_008782.1 3660619 3660849 D hypothetical protein 3660619..3660849 Acidovorax sp. JS42 4674104 YP_987656.1 CDS Ajs_3466 NC_008782.1 3660973 3661611 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: rfr:Rfer_3263 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein complement(3660973..3661611) Acidovorax sp. JS42 4674290 YP_987657.1 CDS Ajs_3467 NC_008782.1 3661608 3663707 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB2119 putative iron-sulfur binding protein; 4Fe-4S ferredoxin complement(3661608..3663707) Acidovorax sp. JS42 4674280 YP_987658.1 CDS Ajs_3468 NC_008782.1 3663631 3664314 R KEGG: rfr:Rfer_3265 hypothetical protein; hypothetical protein complement(3663631..3664314) Acidovorax sp. JS42 4674278 YP_987659.1 CDS Ajs_3469 NC_008782.1 3664307 3664888 R KEGG: pol:Bpro_0932 hypothetical protein; hypothetical protein complement(3664307..3664888) Acidovorax sp. JS42 4674273 YP_987660.1 CDS Ajs_3470 NC_008782.1 3664910 3667801 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3269 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha complement(3664910..3667801) Acidovorax sp. JS42 4674265 YP_987661.1 CDS Ajs_3471 NC_008782.1 3667798 3669720 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(3667798..3669720) Acidovorax sp. JS42 4674263 YP_987662.1 CDS Ajs_3472 NC_008782.1 3669717 3670097 R hypothetical protein complement(3669717..3670097) Acidovorax sp. JS42 4674256 YP_987663.1 CDS Ajs_3473 NC_008782.1 3670072 3670584 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(3670072..3670584) Acidovorax sp. JS42 4674251 YP_987664.1 CDS Ajs_3474 NC_008782.1 3670588 3671484 R KEGG: abo:ABO_1368 cation efflux system permease, putative; cation efflux system permease complement(3670588..3671484) Acidovorax sp. JS42 4674249 YP_987665.1 CDS Ajs_3475 NC_008782.1 3671640 3671909 R hypothetical protein complement(3671640..3671909) Acidovorax sp. JS42 4674239 YP_987666.1 CDS Ajs_3476 NC_008782.1 3671932 3673023 R PFAM: protein of unknown function DUF59; KEGG: rfr:Rfer_3272 putative iron sulfur binding protein; hypothetical protein complement(3671932..3673023) Acidovorax sp. JS42 4674240 YP_987667.1 CDS Ajs_3477 NC_008782.1 3673102 3673272 R KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(3673102..3673272) Acidovorax sp. JS42 4674227 YP_987668.1 CDS Ajs_3478 NC_008782.1 3673293 3674171 R KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(3673293..3674171) Acidovorax sp. JS42 4674221 YP_987669.1 CDS Ajs_3479 NC_008782.1 3674168 3675238 R TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_3860 selenide, water dikinase; selenophosphate synthase complement(3674168..3675238) Acidovorax sp. JS42 4674214 YP_987670.1 CDS Ajs_3480 NC_008782.1 3675295 3676416 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 3675295..3676416 Acidovorax sp. JS42 4674209 YP_987671.1 CDS Ajs_3481 NC_008782.1 3676583 3677152 D PFAM: restriction endonuclease; KEGG: rfr:Rfer_1543 hypothetical protein; restriction endonuclease 3676583..3677152 Acidovorax sp. JS42 4674192 YP_987672.1 CDS metG NC_008782.1 3678478 3680544 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 3678478..3680544 Acidovorax sp. JS42 4671995 YP_987673.1 CDS Ajs_3484 NC_008782.1 3680544 3680870 D hypothetical protein 3680544..3680870 Acidovorax sp. JS42 4674156 YP_987674.1 CDS Ajs_3485 NC_008782.1 3680919 3681956 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppu:PP_4508 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(3680919..3681956) Acidovorax sp. JS42 4674162 YP_987675.1 CDS Ajs_3486 NC_008782.1 3682048 3683661 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rfr:Rfer_3510 fumarate reductase/succinate dehydrogenase flavoprotein-like; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3682048..3683661 Acidovorax sp. JS42 4673303 YP_987676.1 CDS Ajs_3487 NC_008782.1 3683658 3684809 D PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ccr:CC1151 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 3683658..3684809 Acidovorax sp. JS42 4673301 YP_987677.1 CDS Ajs_3488 NC_008782.1 3684878 3686545 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 3684878..3686545 Acidovorax sp. JS42 4673295 YP_987678.1 CDS Ajs_3489 NC_008782.1 3686667 3687353 R PFAM: protein of unknown function DUF161; KEGG: ret:RHE_CH00545 hypothetical protein; hypothetical protein complement(3686667..3687353) Acidovorax sp. JS42 4673294 YP_987679.1 CDS Ajs_3490 NC_008782.1 3687503 3688003 R KEGG: pol:Bpro_0908 putative lipoprotein; putative lipoprotein complement(3687503..3688003) Acidovorax sp. JS42 4673288 YP_987680.1 CDS Ajs_3491 NC_008782.1 3688148 3688351 D KEGG: pol:Bpro_0907 hypothetical protein; hypothetical protein 3688148..3688351 Acidovorax sp. JS42 4673284 YP_987681.1 CDS Ajs_3492 NC_008782.1 3688427 3689287 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: rfr:Rfer_3030 chromosome segregation and condensation protein ScpA; condensin subunit ScpA 3688427..3689287 Acidovorax sp. JS42 4673282 YP_987682.1 CDS Ajs_3493 NC_008782.1 3689337 3690926 D KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase 3689337..3690926 Acidovorax sp. JS42 4673275 YP_987683.1 CDS Ajs_3494 NC_008782.1 3690954 3691334 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 3690954..3691334 Acidovorax sp. JS42 4673274 YP_987684.1 CDS Ajs_3495 NC_008782.1 3691365 3691727 D PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pfl:PFL_1486 5-carboxymethyl-2-hydroxymuconate isomerase, putative; 5-carboxymethyl-2-hydroxymuconate isomerase 3691365..3691727 Acidovorax sp. JS42 4673271 YP_987685.1 CDS Ajs_3496 NC_008782.1 3692067 3693866 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I complement(3692067..3693866) Acidovorax sp. JS42 4673267 YP_987686.1 CDS Ajs_3497 NC_008782.1 3693936 3695060 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(3693936..3695060) Acidovorax sp. JS42 4673447 YP_987687.1 CDS Ajs_3498 NC_008782.1 3695140 3696063 R KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(3695140..3696063) Acidovorax sp. JS42 4673246 YP_987688.1 CDS panB NC_008782.1 3696084 3696965 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3696084..3696965 Acidovorax sp. JS42 4672727 YP_987689.1 CDS panC NC_008782.1 3696982 3697851 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3696982..3697851 Acidovorax sp. JS42 4672704 YP_987690.1 CDS gpsA NC_008782.1 3698162 3699154 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3698162..3699154) Acidovorax sp. JS42 4672701 YP_987691.1 CDS Ajs_3502 NC_008782.1 3699227 3699679 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3699227..3699679) Acidovorax sp. JS42 4672006 YP_987692.1 CDS Ajs_3503 NC_008782.1 3699781 3700038 R TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rfr:Rfer_1311 glutaredoxin, GrxC; glutaredoxin 3 complement(3699781..3700038) Acidovorax sp. JS42 4671951 YP_987693.1 CDS Ajs_3504 NC_008782.1 3700088 3700495 R PFAM: Rhodanese domain protein; KEGG: rfr:Rfer_1310 rhodanese-like; rhodanese domain-containing protein complement(3700088..3700495) Acidovorax sp. JS42 4671780 YP_987694.1 CDS gpmA NC_008782.1 3700569 3701312 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 3700569..3701312 Acidovorax sp. JS42 4671496 YP_987695.1 CDS Ajs_3506 NC_008782.1 3701427 3702863 D KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase-3 3701427..3702863 Acidovorax sp. JS42 4671350 YP_987696.1 CDS Ajs_3507 NC_008782.1 3702931 3703695 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD-binding protein 3702931..3703695 Acidovorax sp. JS42 4671412 YP_987697.1 CDS Ajs_3508 NC_008782.1 3703804 3704214 D PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like); response regulator receiver protein 3703804..3704214 Acidovorax sp. JS42 4671448 YP_987698.1 CDS Ajs_3509 NC_008782.1 3704333 3705052 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(3704333..3705052) Acidovorax sp. JS42 4671449 YP_987699.1 CDS Ajs_3510 NC_008782.1 3705119 3706462 D PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3705119..3706462 Acidovorax sp. JS42 4671427 YP_987700.1 CDS Ajs_3511 NC_008782.1 3706628 3706792 D PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328; hypothetical protein 3706628..3706792 Acidovorax sp. JS42 4670554 YP_987701.1 CDS Ajs_3512 NC_008782.1 3706848 3707240 D KEGG: pol:Bpro_0878 hypothetical protein; hypothetical protein 3706848..3707240 Acidovorax sp. JS42 4670551 YP_987702.1 CDS Ajs_3513 NC_008782.1 3707263 3707808 D PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps; Ferritin, Dps family protein 3707263..3707808 Acidovorax sp. JS42 4670549 YP_987703.1 CDS Ajs_3514 NC_008782.1 3707908 3708222 D PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated; transport protein 3707908..3708222 Acidovorax sp. JS42 4670547 YP_987704.1 CDS Ajs_3515 NC_008782.1 3708313 3709413 D KEGG: hch:HCH_03595 hypothetical protein; hypothetical protein 3708313..3709413 Acidovorax sp. JS42 4670546 YP_987705.1 CDS coaD NC_008782.1 3709414 3709911 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(3709414..3709911) Acidovorax sp. JS42 4670947 YP_987706.1 CDS Ajs_3517 NC_008782.1 3710057 3710680 R TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rfr:Rfer_1668 conserved hypothetical protein 95; putative methyltransferase complement(3710057..3710680) Acidovorax sp. JS42 4670541 YP_987707.1 CDS Ajs_3518 NC_008782.1 3710677 3712059 R PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like; peptidase M16 domain-containing protein complement(3710677..3712059) Acidovorax sp. JS42 4670539 YP_987708.1 CDS Ajs_3519 NC_008782.1 3712075 3713529 R PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1671 peptidase M16-like; peptidase M16 domain-containing protein complement(3712075..3713529) Acidovorax sp. JS42 4670532 YP_987709.1 CDS Ajs_3520 NC_008782.1 3713559 3714707 D KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3713559..3714707 Acidovorax sp. JS42 4670525 YP_987710.1 CDS Ajs_3521 NC_008782.1 3714758 3715120 R PFAM: CutA1 divalent ion tolerance protein; KEGG: cyb:CYB_2195 divalent-cation tolerance protein CutA; CutA1 divalent ion tolerance protein complement(3714758..3715120) Acidovorax sp. JS42 4670822 YP_987711.1 CDS Ajs_3522 NC_008782.1 3715281 3716246 D TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH); RNA polymerase sigma-32 subunit RpoH 3715281..3716246 Acidovorax sp. JS42 4670594 YP_987712.1 CDS Ajs_3523 NC_008782.1 3716374 3717384 D PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_1691 uncharacterized protein UPF0065; hypothetical protein 3716374..3717384 Acidovorax sp. JS42 4670643 YP_987713.1 CDS Ajs_3524 NC_008782.1 3717613 3718395 D PFAM: cyclic nucleotide-binding; KEGG: fra:Francci3_4286 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 3717613..3718395 Acidovorax sp. JS42 4670665 YP_987714.1 CDS Ajs_3525 NC_008782.1 3718417 3720240 R KEGG: rfr:Rfer_2220 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3718417..3720240) Acidovorax sp. JS42 4670716 YP_987715.1 CDS Ajs_3526 NC_008782.1 3720456 3721067 R PFAM: electron transport protein SCO1/SenC; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(3720456..3721067) Acidovorax sp. JS42 4670823 YP_987716.1 CDS Ajs_3527 NC_008782.1 3721077 3721997 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(3721077..3721997) Acidovorax sp. JS42 4670879 YP_987717.1 CDS Ajs_3528 NC_008782.1 3721994 3723184 R PFAM: cytochrome oxidase assembly; KEGG: rfr:Rfer_1688 cytochrome oxidase assembly; cytochrome oxidase assembly complement(3721994..3723184) Acidovorax sp. JS42 4670889 YP_987718.1 CDS Ajs_3529 NC_008782.1 3723190 3723939 R KEGG: rfr:Rfer_1687 hypothetical protein; hypothetical protein complement(3723190..3723939) Acidovorax sp. JS42 4670975 YP_987719.1 CDS Ajs_3530 NC_008782.1 3723881 3724657 R KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase complement(3723881..3724657) Acidovorax sp. JS42 4671033 YP_987720.1 CDS Ajs_3531 NC_008782.1 3724664 3724897 D KEGG: pol:Bpro_1250 putative transmembrane protein; hypothetical protein 3724664..3724897 Acidovorax sp. JS42 4671060 YP_987721.1 CDS Ajs_3532 NC_008782.1 3725075 3725956 R PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(3725075..3725956) Acidovorax sp. JS42 4671068 YP_987722.1 CDS Ajs_3533 NC_008782.1 3726015 3726224 R KEGG: pol:Bpro_1248 hypothetical protein; hypothetical protein complement(3726015..3726224) Acidovorax sp. JS42 4671080 YP_987723.1 CDS Ajs_3534 NC_008782.1 3726221 3726841 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(3726221..3726841) Acidovorax sp. JS42 4670563 YP_987724.1 CDS Ajs_3535 NC_008782.1 3726857 3726967 R hypothetical protein complement(3726857..3726967) Acidovorax sp. JS42 4670564 YP_987725.1 CDS Ajs_3536 NC_008782.1 3726985 3728619 R PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_1681 cytochrome-c oxidase; cytochrome-c oxidase complement(3726985..3728619) Acidovorax sp. JS42 4671117 YP_987726.1 CDS Ajs_3537 NC_008782.1 3728652 3729821 R PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(3728652..3729821) Acidovorax sp. JS42 4671119 YP_987727.1 CDS Ajs_3538 NC_008782.1 3729913 3730206 D hypothetical protein 3729913..3730206 Acidovorax sp. JS42 4671125 YP_987728.1 CDS Ajs_3539 NC_008782.1 3730245 3731153 R KEGG: pol:Bpro_1243 biotin synthesis protein BioC; biotin synthesis protein BioC complement(3730245..3731153) Acidovorax sp. JS42 4671127 YP_987729.1 CDS Ajs_3540 NC_008782.1 3731189 3731917 D KEGG: rfr:Rfer_1678 ComF family protein; ComF family protein 3731189..3731917 Acidovorax sp. JS42 4671128 YP_987730.1 CDS Ajs_3541 NC_008782.1 3731927 3732496 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2; tRNA/rRNA methyltransferase SpoU 3731927..3732496 Acidovorax sp. JS42 4671130 YP_987731.1 CDS Ajs_3542 NC_008782.1 3732526 3732990 R PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase; dehydratase complement(3732526..3732990) Acidovorax sp. JS42 4671131 YP_987732.1 CDS Ajs_3543 NC_008782.1 3733073 3733693 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_1239 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(3733073..3733693) Acidovorax sp. JS42 4671132 YP_987733.1 CDS Ajs_3544 NC_008782.1 3733841 3734479 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2660 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(3733841..3734479) Acidovorax sp. JS42 4670569 YP_987734.1 CDS Ajs_3545 NC_008782.1 3734767 3736734 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_1237 potassium efflux system protein; potassium efflux system protein 3734767..3736734 Acidovorax sp. JS42 4671154 YP_987735.1 CDS Ajs_3546 NC_008782.1 3736759 3737751 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein; hypothetical protein complement(3736759..3737751) Acidovorax sp. JS42 4671280 YP_987736.1 CDS Ajs_3547 NC_008782.1 3737840 3738640 R TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II); 3-oxoadipate enol-lactonase complement(3737840..3738640) Acidovorax sp. JS42 4671278 YP_987737.1 CDS Ajs_3548 NC_008782.1 3738668 3739879 R KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase complement(3738668..3739879) Acidovorax sp. JS42 4671226 YP_987738.1 CDS Ajs_3549 NC_008782.1 3739955 3740608 R KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase complement(3739955..3740608) Acidovorax sp. JS42 4674193 YP_987739.1 CDS Ajs_3550 NC_008782.1 3740636 3741331 R KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(3740636..3741331) Acidovorax sp. JS42 4671517 YP_987740.1 CDS Ajs_3551 NC_008782.1 3741447 3742250 D TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family; IclR family transcriptional regulator 3741447..3742250 Acidovorax sp. JS42 4671592 YP_987741.1 CDS Ajs_3553 NC_008782.1 3742668 3743123 D KEGG: pol:Bpro_1226 hypothetical protein; hypothetical protein 3742668..3743123 Acidovorax sp. JS42 4671456 YP_987742.1 CDS Ajs_3554 NC_008782.1 3743084 3743986 R PFAM: UspA domain protein; KEGG: ppu:PP_2648 universal stress protein family; UspA domain-containing protein complement(3743084..3743986) Acidovorax sp. JS42 4671667 YP_987743.1 CDS Ajs_3555 NC_008782.1 3744447 3745106 R PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I; class I cytochrome c complement(3744447..3745106) Acidovorax sp. JS42 4671752 YP_987744.1 CDS Ajs_3556 NC_008782.1 3745215 3746057 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5; ATPase central domain-containing protein 3745215..3746057 Acidovorax sp. JS42 4671501 YP_987745.1 CDS Ajs_3557 NC_008782.1 3746071 3746298 D KEGG: pol:Bpro_1221 hypothetical protein; hypothetical protein 3746071..3746298 Acidovorax sp. JS42 4671790 YP_987746.1 CDS Ajs_3558 NC_008782.1 3746316 3746918 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein; GCN5-like N-acetyltransferase 3746316..3746918 Acidovorax sp. JS42 4671798 YP_987747.1 CDS Ajs_3559 NC_008782.1 3746937 3748124 D KEGG: rfr:Rfer_1591 hypothetical protein; hypothetical protein 3746937..3748124 Acidovorax sp. JS42 4671803 YP_987748.1 CDS Ajs_3560 NC_008782.1 3748130 3750034 D PFAM: surface antigen (D15); KEGG: rfr:Rfer_1592 surface antigen (D15); surface antigen (D15) 3748130..3750034 Acidovorax sp. JS42 4671508 YP_987749.1 CDS Ajs_3561 NC_008782.1 3750142 3754284 D PFAM: protein of unknown function DUF490; KEGG: rfr:Rfer_1593 protein of unknown function DUF490; hypothetical protein 3750142..3754284 Acidovorax sp. JS42 4671824 YP_987750.1 CDS Ajs_3562 NC_008782.1 3754493 3754855 R KEGG: pcr:Pcryo_0811 17 kDa surface antigen; hypothetical protein complement(3754493..3754855) Acidovorax sp. JS42 4672488 YP_987751.1 CDS Ajs_3563 NC_008782.1 3755146 3756549 R PFAM: phospholipase D/Transphosphatidylase; KEGG: tdn:Tmden_1156 phospholipase D/transphosphatidylase; cardiolipin synthetase 2 complement(3755146..3756549) Acidovorax sp. JS42 4672131 YP_987752.1 CDS Ajs_3564 NC_008782.1 3756880 3757257 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pfl:PFL_4456 arsenate reductase; arsenate reductase complement(3756880..3757257) Acidovorax sp. JS42 4672220 YP_987753.1 CDS Ajs_3565 NC_008782.1 3757305 3758963 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1594 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3757305..3758963) Acidovorax sp. JS42 4672252 YP_987754.1 CDS Ajs_3566 NC_008782.1 3759183 3760259 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related; ABC transporter-like protein 3759183..3760259 Acidovorax sp. JS42 4672321 YP_987755.1 CDS Ajs_3567 NC_008782.1 3760303 3761529 R KEGG: sal:Sala_1097 hypothetical protein; hypothetical protein complement(3760303..3761529) Acidovorax sp. JS42 4672344 YP_987756.1 CDS Ajs_3568 NC_008782.1 3761660 3762400 R PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase; lyso-ornithine lipid acyltransferase complement(3761660..3762400) Acidovorax sp. JS42 4672033 YP_987757.1 CDS Ajs_3569 NC_008782.1 3762420 3763715 R PFAM: amidohydrolase; KEGG: rfr:Rfer_1381 amidohydrolase; dihydroorotase complement(3762420..3763715) Acidovorax sp. JS42 4672398 YP_987758.1 CDS pyrB NC_008782.1 3763928 3764890 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(3763928..3764890) Acidovorax sp. JS42 4672401 YP_987759.1 CDS Ajs_3571 NC_008782.1 3764893 3765426 R PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase; phosphoribosyltransferase complement(3764893..3765426) Acidovorax sp. JS42 4672041 YP_987760.1 CDS Ajs_3572 NC_008782.1 3765423 3765842 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(3765423..3765842) Acidovorax sp. JS42 4672429 YP_987761.1 CDS Ajs_3573 NC_008782.1 3765839 3766438 R PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179; hypothetical protein complement(3765839..3766438) Acidovorax sp. JS42 4672432 YP_987762.1 CDS Ajs_3574 NC_008782.1 3766565 3772645 R PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(3766565..3772645) Acidovorax sp. JS42 4672438 YP_987763.1 CDS Ajs_3575 NC_008782.1 3772692 3774956 R PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_1374 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3772692..3774956) Acidovorax sp. JS42 4672440 YP_987764.1 CDS Ajs_3576 NC_008782.1 3774978 3775505 R PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein; putative CheW protein complement(3774978..3775505) Acidovorax sp. JS42 4672445 YP_987765.1 CDS Ajs_3577 NC_008782.1 3775522 3775887 R PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(3775522..3775887) Acidovorax sp. JS42 4672454 YP_987766.1 CDS Ajs_3578 NC_008782.1 3775899 3776291 R PFAM: response regulator receiver; KEGG: rfr:Rfer_1371 response regulator receiver domain protein; response regulator receiver protein complement(3775899..3776291) Acidovorax sp. JS42 4672598 YP_987767.1 CDS Ajs_3579 NC_008782.1 3776343 3776495 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(3776343..3776495) Acidovorax sp. JS42 4674460 YP_987768.1 CDS Ajs_3580 NC_008782.1 3776611 3777555 D PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 3776611..3777555 Acidovorax sp. JS42 4674459 YP_987769.1 CDS Ajs_3581 NC_008782.1 3777539 3778843 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 3777539..3778843 Acidovorax sp. JS42 4670580 YP_987770.1 CDS Ajs_3582 NC_008782.1 3778933 3780786 D PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative; alkaline phosphatase 3778933..3780786 Acidovorax sp. JS42 4672755 YP_987771.1 CDS Ajs_3583 NC_008782.1 3780880 3781341 R PFAM: cytochrome c, class I; KEGG: bbr:BB4215 cytochrome c552 precursor; class I cytochrome c complement(3780880..3781341) Acidovorax sp. JS42 4672814 YP_987772.1 CDS purH NC_008782.1 3781361 3782962 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(3781361..3782962) Acidovorax sp. JS42 4672846 YP_987773.1 CDS Ajs_3585 NC_008782.1 3783045 3783278 R PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family; DNA-binding protein Fis complement(3783045..3783278) Acidovorax sp. JS42 4672895 YP_987774.1 CDS Ajs_3586 NC_008782.1 3783259 3784320 R TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3; nifR3 family TIM-barrel protein complement(3783259..3784320) Acidovorax sp. JS42 4672942 YP_987775.1 CDS Ajs_3587 NC_008782.1 3784415 3785023 D KEGG: pol:Bpro_1129 hypothetical protein; hypothetical protein 3784415..3785023 Acidovorax sp. JS42 4672946 YP_987776.1 CDS Ajs_3588 NC_008782.1 3785361 3786536 R PFAM: HipA domain protein; KEGG: bam:Bamb_3753 HipA domain protein; HipA domain-containing protein complement(3785361..3786536) Acidovorax sp. JS42 4673031 YP_987777.1 CDS Ajs_3589 NC_008782.1 3786581 3786892 R PFAM: helix-turn-helix domain protein; KEGG: plu:plu2422 hypothetical protein; helix-turn-helix domain-containing protein complement(3786581..3786892) Acidovorax sp. JS42 4673032 YP_987778.1 CDS Ajs_3590 NC_008782.1 3787037 3787276 R PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2619 hypothetical protein; XRE family transcriptional regulator complement(3787037..3787276) Acidovorax sp. JS42 4673057 YP_987779.1 CDS Ajs_3591 NC_008782.1 3787420 3788085 D hypothetical protein 3787420..3788085 Acidovorax sp. JS42 4673068 YP_987780.1 CDS Ajs_3592 NC_008782.1 3788103 3788831 D hypothetical protein 3788103..3788831 Acidovorax sp. JS42 4673070 YP_987781.1 CDS Ajs_3593 NC_008782.1 3788896 3789633 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein; ATP-binding domain-containing protein IstB complement(3788896..3789633) Acidovorax sp. JS42 4673080 YP_987782.1 CDS Ajs_3594 NC_008782.1 3789670 3791214 R PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region; integrase catalytic subunit complement(3789670..3791214) Acidovorax sp. JS42 4673083 YP_987783.1 CDS Ajs_3595 NC_008782.1 3791300 3791821 D hypothetical protein 3791300..3791821 Acidovorax sp. JS42 4673090 YP_987784.1 CDS Ajs_3596 NC_008782.1 3791818 3792294 D KEGG: sat:SYN_02013 hypothetical cytosolic protein; hypothetical protein 3791818..3792294 Acidovorax sp. JS42 4673122 YP_987785.1 CDS Ajs_3597 NC_008782.1 3792281 3792562 D KEGG: rso:RS05533 hypothetical protein; hypothetical protein 3792281..3792562 Acidovorax sp. JS42 4673176 YP_987786.1 CDS Ajs_3598 NC_008782.1 3792543 3794117 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_3094 AAA ATPase, central domain protein; ATPase central domain-containing protein complement(3792543..3794117) Acidovorax sp. JS42 4674650 YP_987787.1 CDS Ajs_3599 NC_008782.1 3794943 3795806 R hypothetical protein complement(3794943..3795806) Acidovorax sp. JS42 4673186 YP_987788.1 CDS Ajs_3600 NC_008782.1 3795809 3798562 R KEGG: pha:PSHAa1245 hypothetical protein; hypothetical protein complement(3795809..3798562) Acidovorax sp. JS42 4673239 YP_987789.1 CDS Ajs_3601 NC_008782.1 3798562 3799176 R KEGG: pfl:PFL_5240 hypothetical protein; hypothetical protein complement(3798562..3799176) Acidovorax sp. JS42 4673422 YP_987790.1 CDS Ajs_3602 NC_008782.1 3799173 3800432 R KEGG: ppu:PP_0695 hypothetical protein; hypothetical protein complement(3799173..3800432) Acidovorax sp. JS42 4673558 YP_987791.1 CDS Ajs_3603 NC_008782.1 3800846 3802558 R PFAM: protein of unknown function DUF262; KEGG: rfr:Rfer_1061 protein of unknown function DUF262; hypothetical protein complement(3800846..3802558) Acidovorax sp. JS42 4673573 YP_987792.1 CDS Ajs_3604 NC_008782.1 3802582 3803850 R PFAM: AAA-4 family protein; KEGG: aeh:Mlg_1541 putative transcriptional regulator; putative transcriptional regulator complement(3802582..3803850) Acidovorax sp. JS42 4673592 YP_987793.1 CDS Ajs_3605 NC_008782.1 3803852 3806719 R PFAM: SMC domain protein; KEGG: aeh:Mlg_1540 SMC domain protein; SMC domain-containing protein complement(3803852..3806719) Acidovorax sp. JS42 4673607 YP_987794.1 CDS Ajs_3606 NC_008782.1 3806730 3809732 R KEGG: neu:NE2527 restriction enzymes type I helicase subunits and related helicases; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease complement(3806730..3809732) Acidovorax sp. JS42 4673627 YP_987795.1 CDS Ajs_3607 NC_008782.1 3809732 3810922 R KEGG: neu:NE2526 restriction modification system, type I; restriction modification system complement(3809732..3810922) Acidovorax sp. JS42 4673653 YP_987796.1 CDS Ajs_3608 NC_008782.1 3810915 3812801 R PFAM: AAA-4 family protein; KEGG: neu:NE2525 possible ATP-dependent DNA helicase RecG-related protein; putative transcriptional regulator complement(3810915..3812801) Acidovorax sp. JS42 4673723 YP_987797.1 CDS Ajs_3609 NC_008782.1 3812794 3814320 R PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: neu:NE2524 possible type I restriction-modification system methylation subunit; N-6 DNA methylase complement(3812794..3814320) Acidovorax sp. JS42 4673311 YP_987798.1 CDS Ajs_3610 NC_008782.1 3814317 3815819 R PFAM: N-6 DNA methylase; KEGG: neu:NE2522 type I restriction-modification system methylation subunit; N-6 DNA methylase complement(3814317..3815819) Acidovorax sp. JS42 4673798 YP_987799.1 CDS Ajs_3611 NC_008782.1 3815816 3816013 R hypothetical protein complement(3815816..3816013) Acidovorax sp. JS42 4673799 YP_987800.1 CDS Ajs_3612 NC_008782.1 3816001 3816267 R hypothetical protein complement(3816001..3816267) Acidovorax sp. JS42 4673805 YP_987801.1 CDS Ajs_3613 NC_008782.1 3816280 3817368 R PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein complement(3816280..3817368) Acidovorax sp. JS42 4673808 YP_987802.1 CDS Ajs_3614 NC_008782.1 3817399 3818466 R PFAM: phage integrase family protein; phage integrase family protein complement(3817399..3818466) Acidovorax sp. JS42 4673822 YP_987803.1 CDS Ajs_3615 NC_008782.1 3818463 3819365 R KEGG: xcv:XCV1295 putative phage replication protein; hypothetical protein complement(3818463..3819365) Acidovorax sp. JS42 4673844 YP_987804.1 CDS Ajs_3616 NC_008782.1 3819720 3820508 R hypothetical protein complement(3819720..3820508) Acidovorax sp. JS42 4673316 YP_987805.1 CDS Ajs_3617 NC_008782.1 3820505 3821677 R PFAM: phage integrase family protein; KEGG: pst:PSPTO_1100 site-specific recombinase, phage integrase family; phage integrase family protein complement(3820505..3821677) Acidovorax sp. JS42 4673854 YP_987806.1 CDS Ajs_3618 NC_008782.1 3821896 3822990 R TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bam:Bamb_0429 GTP-binding protein YchF; GTP-binding protein YchF complement(3821896..3822990) Acidovorax sp. JS42 4673990 YP_987807.1 CDS Ajs_3619 NC_008782.1 3823115 3823984 R PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel; MOSC domain-containing protein complement(3823115..3823984) Acidovorax sp. JS42 4674111 YP_987808.1 CDS Ajs_3620 NC_008782.1 3824086 3825225 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rfr:Rfer_1576 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3824086..3825225 Acidovorax sp. JS42 4674097 YP_987809.1 CDS Ajs_3621 NC_008782.1 3825269 3825979 D KEGG: rfr:Rfer_1575 thiol:disulfide interchange protein DsbC; thiol:disulfide interchange protein DsbC 3825269..3825979 Acidovorax sp. JS42 4674073 YP_987810.1 CDS Ajs_3622 NC_008782.1 3826146 3827927 D PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61; peptidase M61 domain-containing protein 3826146..3827927 Acidovorax sp. JS42 4674055 YP_987811.1 CDS Ajs_3623 NC_008782.1 3827924 3828757 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1573 enoyl-CoA hydratase/isomerase; short chain enoyl-CoA hydratase 3827924..3828757 Acidovorax sp. JS42 4674043 YP_987812.1 CDS Ajs_3624 NC_008782.1 3828954 3829412 D KEGG: rfr:Rfer_3366 hypothetical protein; hypothetical protein 3828954..3829412 Acidovorax sp. JS42 4674017 YP_987813.1 CDS Ajs_3625 NC_008782.1 3829550 3830896 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 3829550..3830896 Acidovorax sp. JS42 4674717 YP_987814.1 CDS Ajs_3626 NC_008782.1 3831018 3832397 R KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) complement(3831018..3832397) Acidovorax sp. JS42 4674678 YP_987815.1 CDS Ajs_3627 NC_008782.1 3832489 3833289 D PFAM: cytochrome c assembly protein; KEGG: rfr:Rfer_3343 cytochrome c assembly protein; cytochrome c assembly protein 3832489..3833289 Acidovorax sp. JS42 4674694 YP_987816.1 CDS Ajs_3628 NC_008782.1 3833286 3833516 D KEGG: mfa:Mfla_0216 hypothetical protein; hypothetical protein 3833286..3833516 Acidovorax sp. JS42 4674684 YP_987817.1 CDS Ajs_3629 NC_008782.1 3833521 3835221 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3833521..3835221 Acidovorax sp. JS42 4674645 YP_987818.1 CDS Ajs_3630 NC_008782.1 3835237 3836745 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 3835237..3836745 Acidovorax sp. JS42 4674641 YP_987819.1 CDS Ajs_3631 NC_008782.1 3836726 3837325 D PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD; N-acetyl-anhydromuranmyl-L-alanine amidase 3836726..3837325 Acidovorax sp. JS42 4674639 YP_987820.1 CDS Ajs_3632 NC_008782.1 3837681 3840599 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3837681..3840599 Acidovorax sp. JS42 4674631 YP_987821.1 CDS Ajs_3633 NC_008782.1 3840738 3841928 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3840738..3841928 Acidovorax sp. JS42 4674595 YP_987822.1 CDS Ajs_3634 NC_008782.1 3842109 3842690 D KEGG: rfr:Rfer_3349 histone protein; histone protein 3842109..3842690 Acidovorax sp. JS42 4674571 YP_987823.1 CDS Ajs_3635 NC_008782.1 3842788 3843684 R PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB; ribokinase-like domain-containing protein complement(3842788..3843684) Acidovorax sp. JS42 4674553 YP_987824.1 CDS Ajs_3636 NC_008782.1 3843710 3845047 R TIGRFAM: MJ0042 family finger-like protein; KEGG: rso:RSc2789 probable transmembrane protein; Zinc finger-domain-containing protein complement(3843710..3845047) Acidovorax sp. JS42 4674557 YP_987825.1 CDS prmA NC_008782.1 3845097 3845990 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(3845097..3845990) Acidovorax sp. JS42 4674540 YP_987826.1 CDS Ajs_3638 NC_008782.1 3846076 3847425 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rfr:Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase complement(3846076..3847425) Acidovorax sp. JS42 4674522 YP_987827.1 CDS Ajs_3639 NC_008782.1 3847539 3848003 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein; biotin carboxyl carrier protein complement(3847539..3848003) Acidovorax sp. JS42 4674524 YP_987828.1 CDS Ajs_3640 NC_008782.1 3848114 3848701 R PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3354 putative thioredoxin-related transmembrane protein; redoxin domain-containing protein complement(3848114..3848701) Acidovorax sp. JS42 4674516 YP_987829.1 CDS Ajs_3641 NC_008782.1 3848698 3849309 R KEGG: pol:Bpro_1097 hypothetical protein; hypothetical protein complement(3848698..3849309) Acidovorax sp. JS42 4674452 YP_987830.1 CDS Ajs_3642 NC_008782.1 3849526 3850950 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3356 UDP-N-acetylmuramate; UDP-N-acetylmuramate 3849526..3850950 Acidovorax sp. JS42 4674434 YP_987831.1 CDS Ajs_3643 NC_008782.1 3850999 3851310 R KEGG: pol:Bpro_1095 hypothetical protein; hypothetical protein complement(3850999..3851310) Acidovorax sp. JS42 4673263 YP_987832.1 CDS Ajs_3644 NC_008782.1 3851405 3852523 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3851405..3852523) Acidovorax sp. JS42 4674439 YP_987833.1 CDS Ajs_3645 NC_008782.1 3852777 3853325 R hypothetical protein complement(3852777..3853325) Acidovorax sp. JS42 4674414 YP_987834.1 CDS Ajs_3646 NC_008782.1 3853348 3854808 R PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_3369 peptidase U62, modulator of DNA gyrase; microcin-processing peptidase 2 complement(3853348..3854808) Acidovorax sp. JS42 4674392 YP_987835.1 CDS Ajs_3647 NC_008782.1 3854870 3856042 R TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA; rod shape-determining protein RodA complement(3854870..3856042) Acidovorax sp. JS42 4674384 YP_987836.1 CDS Ajs_3649 NC_008782.1 3858544 3859131 D PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227; hypothetical protein 3858544..3859131 Acidovorax sp. JS42 4674348 YP_987837.1 CDS Ajs_3650 NC_008782.1 3859132 3860685 R PFAM: O-antigen polymerase; KEGG: rfr:Rfer_4036 O-antigen polymerase; O-antigen polymerase complement(3859132..3860685) Acidovorax sp. JS42 4674341 YP_987838.1 CDS Ajs_3651 NC_008782.1 3860734 3861210 R PFAM: cytochrome c, class I; KEGG: bbr:BB1839 putative cytochrome c; class I cytochrome c complement(3860734..3861210) Acidovorax sp. JS42 4674339 YP_987839.1 CDS Ajs_3652 NC_008782.1 3861282 3861947 R KEGG: eba:ebA6069 conserved hypothetical protein, putatively exported via twin-arginine system; hypothetical protein complement(3861282..3861947) Acidovorax sp. JS42 4674337 YP_987840.1 CDS Ajs_3653 NC_008782.1 3861975 3862706 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bbr:BB1837 putative ECF-family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor complement(3861975..3862706) Acidovorax sp. JS42 4674322 YP_987841.1 CDS Ajs_3654 NC_008782.1 3862835 3864922 D PFAM: ribonuclease II; KEGG: rfr:Rfer_3411 ribonuclease II; ribonuclease II 3862835..3864922 Acidovorax sp. JS42 4674283 YP_987842.1 CDS Ajs_3655 NC_008782.1 3864947 3865861 D TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like; TonB family protein 3864947..3865861 Acidovorax sp. JS42 4674274 YP_987843.1 CDS aroE NC_008782.1 3865861 3866709 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 3865861..3866709 Acidovorax sp. JS42 4674125 YP_987844.1 CDS Ajs_3657 NC_008782.1 3866713 3867435 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rfr:Rfer_3419 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 3866713..3867435 Acidovorax sp. JS42 4674216 YP_987845.1 CDS ruvC NC_008782.1 3867515 3868075 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 3867515..3868075 Acidovorax sp. JS42 4674225 YP_987846.1 CDS Ajs_3659 NC_008782.1 3868112 3869764 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3868112..3869764) Acidovorax sp. JS42 4674208 YP_987847.1 CDS Ajs_3660 NC_008782.1 3870019 3871644 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2029 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3870019..3871644 Acidovorax sp. JS42 4674188 YP_987848.1 CDS Ajs_3661 NC_008782.1 3871696 3873540 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(3871696..3873540) Acidovorax sp. JS42 4674184 YP_987849.1 CDS Ajs_3662 NC_008782.1 3873785 3873961 R KEGG: pol:Bpro_1082 hypothetical protein; hypothetical protein complement(3873785..3873961) Acidovorax sp. JS42 4673738 YP_987850.1 CDS lpxC NC_008782.1 3873980 3874903 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(3873980..3874903) Acidovorax sp. JS42 4673701 YP_987851.1 CDS Ajs_3664 NC_008782.1 3875067 3876863 D PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein; methyl-accepting chemotaxis sensory transducer 3875067..3876863 Acidovorax sp. JS42 4673683 YP_987852.1 CDS Ajs_3665 NC_008782.1 3877005 3878234 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ; cell division protein FtsZ complement(3877005..3878234) Acidovorax sp. JS42 4673668 YP_987853.1 CDS Ajs_3666 NC_008782.1 3878397 3879626 R PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA; cell division protein FtsA complement(3878397..3879626) Acidovorax sp. JS42 4673667 YP_987854.1 CDS Ajs_3667 NC_008782.1 3879644 3880477 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rfr:Rfer_3422 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(3879644..3880477) Acidovorax sp. JS42 4673663 YP_987855.1 CDS ddl NC_008782.1 3880474 3881472 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(3880474..3881472) Acidovorax sp. JS42 4673646 YP_987856.1 CDS murC NC_008782.1 3881469 3882902 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3881469..3882902) Acidovorax sp. JS42 4673644 YP_987857.1 CDS murG NC_008782.1 3882899 3884098 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3882899..3884098) Acidovorax sp. JS42 4673642 YP_987858.1 CDS Ajs_3671 NC_008782.1 3884193 3885473 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein; cell division protein FtsW complement(3884193..3885473) Acidovorax sp. JS42 4673634 YP_987859.1 CDS murD NC_008782.1 3885470 3886966 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3885470..3886966) Acidovorax sp. JS42 4673631 YP_987860.1 CDS mraY NC_008782.1 3887359 3888537 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3887359..3888537) Acidovorax sp. JS42 4673624 YP_987861.1 CDS Ajs_3674 NC_008782.1 3888528 3889976 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(3888528..3889976) Acidovorax sp. JS42 4673621 YP_987862.1 CDS murE NC_008782.1 3889973 3891478 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(3889973..3891478) Acidovorax sp. JS42 4673617 YP_987863.1 CDS Ajs_3676 NC_008782.1 3891475 3893223 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase; peptidoglycan synthetase FtsI complement(3891475..3893223) Acidovorax sp. JS42 4673611 YP_987864.1 CDS Ajs_3677 NC_008782.1 3893220 3893522 R PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like; cell division protein FtsL complement(3893220..3893522) Acidovorax sp. JS42 4673609 YP_987865.1 CDS mraW NC_008782.1 3893632 3894558 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rfr:Rfer_3433 methyltransferase; S-adenosyl-methyltransferase MraW complement(3893632..3894558) Acidovorax sp. JS42 4673599 YP_987866.1 CDS Ajs_3679 NC_008782.1 3894568 3894996 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(3894568..3894996) Acidovorax sp. JS42 4673594 YP_987867.1 CDS hslU NC_008782.1 3895262 3896602 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(3895262..3896602) Acidovorax sp. JS42 4673578 YP_987868.1 CDS Ajs_3681 NC_008782.1 3896698 3897279 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(3896698..3897279) Acidovorax sp. JS42 4673569 YP_987869.1 CDS Ajs_3682 NC_008782.1 3897337 3899145 R KEGG: pol:Bpro_1065 hypothetical protein; hypothetical protein complement(3897337..3899145) Acidovorax sp. JS42 4673555 YP_987870.1 CDS Ajs_3683 NC_008782.1 3899199 3900044 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(3899199..3900044) Acidovorax sp. JS42 4673551 YP_987871.1 CDS Ajs_3684 NC_008782.1 3900068 3901177 R PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rfr:Rfer_3439 cobalamin synthesis protein, P47K; cobalamin synthesis protein, P47K complement(3900068..3901177) Acidovorax sp. JS42 4673548 YP_987872.1 CDS Ajs_3685 NC_008782.1 3901285 3902472 R KEGG: rfr:Rfer_3440 PUA; SAM-dependent methyltransferase complement(3901285..3902472) Acidovorax sp. JS42 4673539 YP_987873.1 CDS Ajs_3686 NC_008782.1 3902564 3903535 R TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rfr:Rfer_3442 phage integrase; tyrosine recombinase XerC complement(3902564..3903535) Acidovorax sp. JS42 4673533 YP_987874.1 CDS Ajs_3687 NC_008782.1 3903635 3904327 R PFAM: protein of unknown function DUF484; KEGG: rfr:Rfer_3443 hypothetical protein; hypothetical protein complement(3903635..3904327) Acidovorax sp. JS42 4673516 YP_987875.1 CDS dapF NC_008782.1 3904324 3905271 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3904324..3905271) Acidovorax sp. JS42 4673505 YP_987876.1 CDS Ajs_3689 NC_008782.1 3905322 3905594 D hypothetical protein 3905322..3905594 Acidovorax sp. JS42 4673488 YP_987877.1 CDS Ajs_3690 NC_008782.1 3905677 3905877 D hypothetical protein 3905677..3905877 Acidovorax sp. JS42 4673466 YP_987878.1 CDS Ajs_3691 NC_008782.1 3905912 3907618 D PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like; beta-lactamase domain-containing protein 3905912..3907618 Acidovorax sp. JS42 4673464 YP_987879.1 CDS Ajs_3692 NC_008782.1 3907611 3908411 D PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4; RNA-binding S4 domain-containing protein 3907611..3908411 Acidovorax sp. JS42 4673458 YP_987880.1 CDS Ajs_3693 NC_008782.1 3908593 3910386 D PFAM: YhhN family protein; KEGG: pfo:Pfl_5467 hypothetical protein; YhhN family protein 3908593..3910386 Acidovorax sp. JS42 4673446 YP_987881.1 CDS ruvB NC_008782.1 3910391 3911461 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3910391..3911461) Acidovorax sp. JS42 4673228 YP_987882.1 CDS Ajs_3695 NC_008782.1 3911686 3912324 D KEGG: reu:Reut_A1751 hypothetical protein; hypothetical protein 3911686..3912324 Acidovorax sp. JS42 4673240 YP_987883.1 CDS Ajs_3696 NC_008782.1 3912333 3914243 D KEGG: reu:Reut_A1752 putative heat-shock chaperone protein; putative heat-shock chaperone protein 3912333..3914243 Acidovorax sp. JS42 4673428 YP_987884.1 CDS Ajs_3697 NC_008782.1 3914254 3914847 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sme:SMc00379 putative oxidoreductase protein; NAD(P)H dehydrogenase (quinone) 3914254..3914847 Acidovorax sp. JS42 4673425 YP_987885.1 CDS Ajs_3698 NC_008782.1 3914852 3917722 D KEGG: eba:ebA1979 DnaK-related protein; DnaK-like protein 3914852..3917722 Acidovorax sp. JS42 4673419 YP_987886.1 CDS Ajs_3699 NC_008782.1 3917987 3919438 R KEGG: xac:XAC2992 endoproteinase Arg-C; endoproteinase Arg-C complement(3917987..3919438) Acidovorax sp. JS42 4673410 YP_987887.1 CDS ruvA NC_008782.1 3919477 3920049 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(3919477..3920049) Acidovorax sp. JS42 4673394 YP_987888.1 CDS Ajs_3701 NC_008782.1 3920052 3921059 D PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein; PhoH family protein 3920052..3921059 Acidovorax sp. JS42 4673370 YP_987889.1 CDS Ajs_3702 NC_008782.1 3921125 3921583 D PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054; hypothetical protein 3921125..3921583 Acidovorax sp. JS42 4673368 YP_987890.1 CDS Ajs_3703 NC_008782.1 3921809 3922897 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 3921809..3922897 Acidovorax sp. JS42 4673340 YP_987891.1 CDS Ajs_3704 NC_008782.1 3923067 3923843 D PFAM: protein of unknown function DUF81; KEGG: ade:Adeh_2178 protein of unknown function DUF81; hypothetical protein 3923067..3923843 Acidovorax sp. JS42 4673337 YP_987892.1 CDS Ajs_3705 NC_008782.1 3923870 3925279 R PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_0650 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein complement(3923870..3925279) Acidovorax sp. JS42 4673328 YP_987893.1 CDS Ajs_3706 NC_008782.1 3925289 3925753 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(3925289..3925753) Acidovorax sp. JS42 4673022 YP_987894.1 CDS Ajs_3707 NC_008782.1 3925750 3926709 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pol:Bpro_4099 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(3925750..3926709) Acidovorax sp. JS42 4673021 YP_987895.1 CDS Ajs_3708 NC_008782.1 3926730 3928943 D KEGG: dar:Daro_1052 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3926730..3928943 Acidovorax sp. JS42 4673008 YP_987896.1 CDS Ajs_3709 NC_008782.1 3929005 3930486 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 3929005..3930486 Acidovorax sp. JS42 4672992 YP_987897.1 CDS Ajs_3710 NC_008782.1 3930559 3931818 R KEGG: par:Psyc_1092 hypothetical protein; hypothetical protein complement(3930559..3931818) Acidovorax sp. JS42 4672990 YP_987898.1 CDS Ajs_3711 NC_008782.1 3931958 3932929 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related; ABC transporter-like protein 3931958..3932929 Acidovorax sp. JS42 4672971 YP_987899.1 CDS Ajs_3712 NC_008782.1 3932931 3933740 D TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC-2 type transporter, NodJ family; ABC transporter 3932931..3933740 Acidovorax sp. JS42 4672726 YP_987900.1 CDS Ajs_3714 NC_008782.1 3934234 3935580 D PFAM: GAF domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pol:Bpro_0630 putative GAF sensor protein; putative GAF sensor protein 3934234..3935580 Acidovorax sp. JS42 4672954 YP_987901.1 CDS Ajs_3715 NC_008782.1 3935601 3936032 R hypothetical protein complement(3935601..3936032) Acidovorax sp. JS42 4672944 YP_987902.1 CDS Ajs_3716 NC_008782.1 3936029 3936748 R KEGG: pol:Bpro_0629 hypothetical protein; hypothetical protein complement(3936029..3936748) Acidovorax sp. JS42 4672930 YP_987903.1 CDS Ajs_3717 NC_008782.1 3936924 3938519 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_0572 glucose-methanol-choline oxidoreductase; glucose-methanol-choline oxidoreductase complement(3936924..3938519) Acidovorax sp. JS42 4672924 YP_987904.1 CDS Ajs_3718 NC_008782.1 3938632 3939480 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 3938632..3939480 Acidovorax sp. JS42 4672920 YP_987905.1 CDS Ajs_3719 NC_008782.1 3939501 3940292 D PFAM: HpcH/HpaI aldolase; KEGG: reu:Reut_C5927 2-dehydro-3-deoxyglucarate aldolase; 2-dehydro-3-deoxyglucarate aldolase 3939501..3940292 Acidovorax sp. JS42 4672914 YP_987906.1 CDS Ajs_3720 NC_008782.1 3940759 3942018 D PFAM: protein of unknown function DUF898, transmembrane; KEGG: rme:Rmet_2800 protein of unknown function DUF898, transmembrane; hypothetical protein 3940759..3942018 Acidovorax sp. JS42 4672913 YP_987907.1 CDS Ajs_3721 NC_008782.1 3942068 3943201 D PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein; peptidase M48, Ste24p 3942068..3943201 Acidovorax sp. JS42 4672909 YP_987908.1 CDS Ajs_3722 NC_008782.1 3943658 3943828 R hypothetical protein complement(3943658..3943828) Acidovorax sp. JS42 4672690 YP_987909.1 CDS Ajs_3723 NC_008782.1 3944072 3944989 D TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_3460 cysteine synthases; cysteine synthase 3944072..3944989 Acidovorax sp. JS42 4672877 YP_987910.1 CDS Ajs_3724 NC_008782.1 3945126 3945965 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_3616 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 3945126..3945965 Acidovorax sp. JS42 4672855 YP_987911.1 CDS Ajs_3725 NC_008782.1 3945965 3947182 D KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase; cardiolipin synthase 2 3945965..3947182 Acidovorax sp. JS42 4672847 YP_987912.1 CDS Ajs_3726 NC_008782.1 3947191 3948258 D KEGG: rfr:Rfer_3618 hypothetical protein; hypothetical protein 3947191..3948258 Acidovorax sp. JS42 4672689 YP_987913.1 CDS Ajs_3727 NC_008782.1 3948345 3950126 D PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3948345..3950126 Acidovorax sp. JS42 4672834 YP_987914.1 CDS Ajs_3728 NC_008782.1 3950138 3950764 R PFAM: protein of unknown function UPF0126; KEGG: rxy:Rxyl_2647 protein of unknown function UPF0126; hypothetical protein complement(3950138..3950764) Acidovorax sp. JS42 4672803 YP_987915.1 CDS Ajs_3730 NC_008782.1 3951689 3952621 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha complement(3951689..3952621) Acidovorax sp. JS42 4672775 YP_987916.1 CDS Ajs_3731 NC_008782.1 3952643 3953392 R PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(3952643..3953392) Acidovorax sp. JS42 4672771 YP_987917.1 CDS Ajs_3732 NC_008782.1 3953414 3954388 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bur:Bcep18194_B1554 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(3953414..3954388) Acidovorax sp. JS42 4672763 YP_987918.1 CDS Ajs_3733 NC_008782.1 3954400 3955395 R PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3875 hypothetical protein; hypothetical protein complement(3954400..3955395) Acidovorax sp. JS42 4672749 YP_987919.1 CDS Ajs_3734 NC_008782.1 3955466 3956701 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3874 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(3955466..3956701) Acidovorax sp. JS42 4672378 YP_987920.1 CDS Ajs_3735 NC_008782.1 3956737 3957567 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3956737..3957567) Acidovorax sp. JS42 4672376 YP_987921.1 CDS Ajs_3736 NC_008782.1 3957677 3958807 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2592 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(3957677..3958807) Acidovorax sp. JS42 4672364 YP_987922.1 CDS Ajs_3737 NC_008782.1 3958833 3960044 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_A1390 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3958833..3960044) Acidovorax sp. JS42 4672356 YP_987923.1 CDS Ajs_3738 NC_008782.1 3960055 3961254 R KEGG: rfr:Rfer_2594 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3960055..3961254) Acidovorax sp. JS42 4672330 YP_987924.1 CDS Ajs_3739 NC_008782.1 3961397 3963514 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(3961397..3963514) Acidovorax sp. JS42 4672318 YP_987925.1 CDS Ajs_3740 NC_008782.1 3963647 3964585 D PFAM: regulatory protein, MarR; regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A6222 transcriptional regulator, LysR family; LysR family transcriptional regulator 3963647..3964585 Acidovorax sp. JS42 4672305 YP_987926.1 CDS Ajs_3741 NC_008782.1 3964599 3964961 R KEGG: dar:Daro_3332 hypothetical protein; hypothetical protein complement(3964599..3964961) Acidovorax sp. JS42 4672299 YP_987927.1 CDS Ajs_3742 NC_008782.1 3965056 3965934 R putative metalloprotease; heat shock protein HtpX complement(3965056..3965934) Acidovorax sp. JS42 4672296 YP_987928.1 CDS Ajs_3743 NC_008782.1 3966062 3966835 R KEGG: pol:Bpro_1031 putative transmembrane protein; hypothetical protein complement(3966062..3966835) Acidovorax sp. JS42 4672291 YP_987929.1 CDS Ajs_3744 NC_008782.1 3966832 3967695 R PFAM: protein of unknown function DUF88; KEGG: pol:Bpro_1025 protein of unknown function DUF88; hypothetical protein complement(3966832..3967695) Acidovorax sp. JS42 4672290 YP_987930.1 CDS Ajs_3745 NC_008782.1 3967730 3968773 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(3967730..3968773) Acidovorax sp. JS42 4672286 YP_987931.1 CDS Ajs_3746 NC_008782.1 3968912 3969475 R hypothetical protein complement(3968912..3969475) Acidovorax sp. JS42 4672262 YP_987932.1 CDS Ajs_3747 NC_008782.1 3969559 3975384 R KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; UvrA family protein complement(3969559..3975384) Acidovorax sp. JS42 4672244 YP_987933.1 CDS Ajs_3748 NC_008782.1 3975543 3976655 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3975543..3976655 Acidovorax sp. JS42 4672237 YP_987934.1 CDS Ajs_3749 NC_008782.1 3976790 3977914 D PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor; extracellular ligand-binding receptor 3976790..3977914 Acidovorax sp. JS42 4672236 YP_987935.1 CDS Ajs_3750 NC_008782.1 3978001 3978213 R hypothetical protein complement(3978001..3978213) Acidovorax sp. JS42 4672229 YP_987936.1 CDS Ajs_3751 NC_008782.1 3978311 3979321 R PFAM: porin, Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin); porin complement(3978311..3979321) Acidovorax sp. JS42 4672227 YP_987937.1 CDS Ajs_3752 NC_008782.1 3979560 3981254 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_0462 major facilitator superfamily MFS_1; major facilitator superfamily transporter complement(3979560..3981254) Acidovorax sp. JS42 4672203 YP_987938.1 CDS Ajs_3753 NC_008782.1 3981701 3982354 R PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_3816 DsbA oxidoreductase; DSBA oxidoreductase complement(3981701..3982354) Acidovorax sp. JS42 4672154 YP_987939.1 CDS Ajs_3754 NC_008782.1 3982351 3982635 R PFAM: protein of unknown function DUF1289; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein; hypothetical protein complement(3982351..3982635) Acidovorax sp. JS42 4672140 YP_987940.1 CDS Ajs_3755 NC_008782.1 3982632 3983120 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated protein complement(3982632..3983120) Acidovorax sp. JS42 4671978 YP_987941.1 CDS Ajs_3756 NC_008782.1 3983234 3984967 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: pae:PA4929 hypothetical protein; diguanylate cyclase 3983234..3984967 Acidovorax sp. JS42 4672127 YP_987942.1 CDS Ajs_3757 NC_008782.1 3984982 3985896 R PFAM: pyruvate carboxyltransferase; KEGG: rfr:Rfer_3824 pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase complement(3984982..3985896) Acidovorax sp. JS42 4672126 YP_987943.1 CDS Ajs_3758 NC_008782.1 3985925 3986845 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(3985925..3986845) Acidovorax sp. JS42 4672121 YP_987944.1 CDS Ajs_3759 NC_008782.1 3986884 3988902 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding; 3-methylcrotonoyl-CoA carboxylase subunit alpha complement(3986884..3988902) Acidovorax sp. JS42 4672097 YP_987945.1 CDS Ajs_3760 NC_008782.1 3988903 3989622 R KEGG: pol:Bpro_4158 putative transmembrane protein; hypothetical protein complement(3988903..3989622) Acidovorax sp. JS42 4672085 YP_987946.1 CDS Ajs_3761 NC_008782.1 3989629 3990411 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3989629..3990411) Acidovorax sp. JS42 4672067 YP_987947.1 CDS Ajs_3762 NC_008782.1 3990408 3990917 R PFAM: DinB family protein; KEGG: bmb:BruAb1_0712 hypothetical protein; DinB family protein complement(3990408..3990917) Acidovorax sp. JS42 4672057 YP_987948.1 CDS Ajs_3763 NC_008782.1 3990928 3992532 R PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase; propionyl-CoA carboxylase complement(3990928..3992532) Acidovorax sp. JS42 4672056 YP_987949.1 CDS Ajs_3764 NC_008782.1 3992547 3994283 R activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein complement(3992547..3994283) Acidovorax sp. JS42 4672055 YP_987950.1 CDS Ajs_3765 NC_008782.1 3994429 3995514 D PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family; AraC family transcriptional regulator 3994429..3995514 Acidovorax sp. JS42 4672054 YP_987951.1 CDS Ajs_3766 NC_008782.1 3995893 3996873 R PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein; transposase, IS4 family protein complement(3995893..3996873) Acidovorax sp. JS42 4671778 YP_987952.1 CDS Ajs_3767 NC_008782.1 3997634 3998302 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA4663 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 3997634..3998302 Acidovorax sp. JS42 4671770 YP_987953.1 CDS Ajs_3768 NC_008782.1 3998347 3999129 D KEGG: dar:Daro_4102 hypothetical protein; hypothetical protein 3998347..3999129 Acidovorax sp. JS42 4671763 YP_987954.1 CDS Ajs_3769 NC_008782.1 3999232 4000938 D PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPOA0130 AMP-binding enzyme family protein; AMP-dependent synthetase and ligase 3999232..4000938 Acidovorax sp. JS42 4671758 YP_987955.1 CDS Ajs_3770 NC_008782.1 4001058 4001753 R KEGG: pol:Bpro_0271 hypothetical protein; hypothetical protein complement(4001058..4001753) Acidovorax sp. JS42 4671748 YP_987956.1 CDS Ajs_3771 NC_008782.1 4002057 4002488 R KEGG: pol:Bpro_4182 hypothetical protein; hypothetical protein complement(4002057..4002488) Acidovorax sp. JS42 4671743 YP_987957.1 CDS Ajs_3772 NC_008782.1 4002804 4004564 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3937 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4002804..4004564 Acidovorax sp. JS42 4671733 YP_987958.1 CDS Ajs_3773 NC_008782.1 4004832 4005494 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3; HAD family hydrolase complement(4004832..4005494) Acidovorax sp. JS42 4671731 YP_987959.1 CDS Ajs_3774 NC_008782.1 4005565 4006695 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3838 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein complement(4005565..4006695) Acidovorax sp. JS42 4671715 YP_987960.1 CDS Ajs_3775 NC_008782.1 4006745 4007413 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4186 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(4006745..4007413) Acidovorax sp. JS42 4671702 YP_987961.1 CDS Ajs_3776 NC_008782.1 4007516 4008706 R KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(4007516..4008706) Acidovorax sp. JS42 4671419 YP_987962.1 CDS aceK NC_008782.1 4008703 4010532 R catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein complement(4008703..4010532) Acidovorax sp. JS42 4671680 YP_987963.1 CDS Ajs_3778 NC_008782.1 4010570 4011232 R PFAM: carbonic anhydrase; KEGG: rfr:Rfer_3841 carbonate dehydratase; carbonate dehydratase complement(4010570..4011232) Acidovorax sp. JS42 4671677 YP_987964.1 CDS Ajs_3779 NC_008782.1 4011288 4012478 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like; isovaleryl-CoA dehydrogenase complement(4011288..4012478) Acidovorax sp. JS42 4671675 YP_987965.1 CDS Ajs_3780 NC_008782.1 4012608 4013018 R PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_3843 transcriptional regulator, MerR family; MerR family transcriptional regulator complement(4012608..4013018) Acidovorax sp. JS42 4671672 YP_987966.1 CDS Ajs_3782 NC_008782.1 4013322 4014548 R PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family; transposase, mutator type complement(4013322..4014548) Acidovorax sp. JS42 4671652 YP_987967.1 CDS Ajs_3784 NC_008782.1 4014781 4015593 D PFAM: Integrase, catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB; integrase catalytic subunit 4014781..4015593 Acidovorax sp. JS42 4671646 YP_987968.1 CDS Ajs_3785 NC_008782.1 4021542 4023428 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related; ABC transporter-like protein 4021542..4023428 Acidovorax sp. JS42 4671552 YP_987969.1 CDS Ajs_3786 NC_008782.1 4023438 4024550 R PFAM: CheB methylesterase; response regulator receiver; KEGG: rfr:Rfer_0571 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase complement(4023438..4024550) Acidovorax sp. JS42 4671531 YP_987970.1 CDS Ajs_3787 NC_008782.1 4024588 4025325 R catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD complement(4024588..4025325) Acidovorax sp. JS42 4671519 YP_987971.1 CDS Ajs_3788 NC_008782.1 4025365 4026258 R PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; KEGG: rfr:Rfer_0569 MCP methyltransferase, CheR-type; MCP methyltransferase, CheR-type complement(4025365..4026258) Acidovorax sp. JS42 4671040 YP_987972.1 CDS Ajs_3789 NC_008782.1 4026307 4026795 R PFAM: CheW domain protein; KEGG: rfr:Rfer_0568 CheW protein; CheW protein complement(4026307..4026795) Acidovorax sp. JS42 4671039 YP_987973.1 CDS Ajs_3790 NC_008782.1 4026829 4028961 R PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0567 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase complement(4026829..4028961) Acidovorax sp. JS42 4671034 YP_987974.1 CDS Ajs_3791 NC_008782.1 4029013 4029375 R PFAM: response regulator receiver; KEGG: rfr:Rfer_0566 response regulator receiver domain protein; response regulator receiver protein complement(4029013..4029375) Acidovorax sp. JS42 4671029 YP_987975.1 CDS Ajs_3792 NC_008782.1 4029444 4029890 R KEGG: rfr:Rfer_0565 hypothetical protein; hypothetical protein complement(4029444..4029890) Acidovorax sp. JS42 4671025 YP_987976.1 CDS Ajs_3793 NC_008782.1 4030040 4031161 D PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rfr:Rfer_0564 putative signal transduction histidine kinase; response regulator receiver sensor signal transduction histidine kinase 4030040..4031161 Acidovorax sp. JS42 4671021 YP_987977.1 CDS Ajs_3794 NC_008782.1 4031158 4031787 D PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rfr:Rfer_0563 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 4031158..4031787 Acidovorax sp. JS42 4671020 YP_987978.1 CDS Ajs_3795 NC_008782.1 4031886 4032656 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rfr:Rfer_0562 flagellar biosynthetic protein FliR; flagellar biosynthetic protein FliR complement(4031886..4032656) Acidovorax sp. JS42 4671015 YP_987979.1 CDS Ajs_3796 NC_008782.1 4032662 4032931 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: rfr:Rfer_0561 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ complement(4032662..4032931) Acidovorax sp. JS42 4671012 YP_987980.1 CDS fliP NC_008782.1 4032942 4033697 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(4032942..4033697) Acidovorax sp. JS42 4670996 YP_987981.1 CDS Ajs_3798 NC_008782.1 4033690 4034067 R PFAM: flagellar biosynthesis protein, FliO; KEGG: rfr:Rfer_0559 hypothetical protein; flagellar biosynthesis protein, FliO complement(4033690..4034067) Acidovorax sp. JS42 4670990 YP_987982.1 CDS Ajs_3799 NC_008782.1 4034060 4034509 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN; flagellar motor switch protein FliN complement(4034060..4034509) Acidovorax sp. JS42 4670953 YP_987983.1 CDS Ajs_3800 NC_008782.1 4034499 4035503 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rfr:Rfer_0557 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(4034499..4035503) Acidovorax sp. JS42 4670542 YP_987984.1 CDS Ajs_3801 NC_008782.1 4035519 4036091 R PFAM: flagellar basal body-associated protein FliL; KEGG: rfr:Rfer_0556 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(4035519..4036091) Acidovorax sp. JS42 4670942 YP_987985.1 CDS Ajs_3802 NC_008782.1 4036309 4037619 R PFAM: flagellar hook-length control protein; KEGG: rfr:Rfer_0555 flagellar hook-length control protein; flagellar hook-length control protein complement(4036309..4037619) Acidovorax sp. JS42 4670940 YP_987986.1 CDS Ajs_3803 NC_008782.1 4037622 4038086 R TIGRFAM: flagellar export protein FliJ; KEGG: rfr:Rfer_0554 flagellar export FliJ; flagellar export protein FliJ complement(4037622..4038086) Acidovorax sp. JS42 4670933 YP_987987.1 CDS Ajs_3804 NC_008782.1 4038114 4039481 R KEGG: rfr:Rfer_0553 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; flagellar protein export ATPase FliI complement(4038114..4039481) Acidovorax sp. JS42 4670932 YP_987988.1 CDS Ajs_3805 NC_008782.1 4039507 4040241 R PFAM: flagellar assembly protein FliH; KEGG: rfr:Rfer_0552 flagellar assembly protein FliH; flagellar assembly protein FliH complement(4039507..4040241) Acidovorax sp. JS42 4670929 YP_987989.1 CDS Ajs_3806 NC_008782.1 4040251 4041246 R PFAM: flagellar motor switch protein FliG; KEGG: rfr:Rfer_0551 flagellar motor switch protein FliG; flagellar motor switch protein FliG complement(4040251..4041246) Acidovorax sp. JS42 4670915 YP_987990.1 CDS Ajs_3807 NC_008782.1 4041280 4042974 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: rfr:Rfer_0550 flagellar M-ring protein FliF; flagellar M-ring protein FliF complement(4041280..4042974) Acidovorax sp. JS42 4670912 YP_987991.1 CDS Ajs_3808 NC_008782.1 4043147 4043458 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein; flagellar hook-basal body complex subunit FliE 4043147..4043458 Acidovorax sp. JS42 4670533 YP_987992.1 CDS Ajs_3809 NC_008782.1 4043640 4043939 R KEGG: rfr:Rfer_0634 flagellar protein FliT; flagellar protein FliT complement(4043640..4043939) Acidovorax sp. JS42 4670895 YP_987993.1 CDS Ajs_3810 NC_008782.1 4043942 4044367 R PFAM: flagellar protein FliS; KEGG: rfr:Rfer_0633 flagellar protein FliS; flagellar protein FliS complement(4043942..4044367) Acidovorax sp. JS42 4670884 YP_987994.1 CDS Ajs_3811 NC_008782.1 4044510 4045949 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rfr:Rfer_0632 flagellar hook-associated 2-like; flagellar hook-associated 2 domain-containing protein complement(4044510..4045949) Acidovorax sp. JS42 4670877 YP_987995.1 CDS Ajs_3812 NC_008782.1 4046143 4046982 R PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein complement(4046143..4046982) Acidovorax sp. JS42 4670872 YP_987996.1 CDS Ajs_3813 NC_008782.1 4047244 4048083 R PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein complement(4047244..4048083) Acidovorax sp. JS42 4670867 YP_987997.1 CDS Ajs_3814 NC_008782.1 4048345 4049181 R PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein; flagellin domain-containing protein complement(4048345..4049181) Acidovorax sp. JS42 4670529 YP_987998.1 CDS Ajs_3815 NC_008782.1 4049628 4050488 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3702 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4049628..4050488 Acidovorax sp. JS42 4670862 YP_987999.1 CDS Ajs_3816 NC_008782.1 4050515 4051456 D PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_3703 OmpA/MotB; OmpA/MotB domain-containing protein 4050515..4051456 Acidovorax sp. JS42 4670860 YP_988000.1 CDS Ajs_3817 NC_008782.1 4051518 4051904 D PFAM: response regulator receiver; KEGG: rfr:Rfer_3704 response regulator receiver domain protein; response regulator receiver protein 4051518..4051904 Acidovorax sp. JS42 4670852 YP_988001.1 CDS Ajs_3818 NC_008782.1 4051907 4052536 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: rfr:Rfer_3705 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 4051907..4052536 Acidovorax sp. JS42 4670846 YP_988002.1 CDS Ajs_3819 NC_008782.1 4052759 4053931 D PFAM: type III secretion exporter; KEGG: rfr:Rfer_3706 type III secretion exporter; type III secretion exporter 4052759..4053931 Acidovorax sp. JS42 4670845 YP_988003.1 CDS Ajs_3820 NC_008782.1 4053928 4056012 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rfr:Rfer_3707 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 4053928..4056012 Acidovorax sp. JS42 4670835 YP_988004.1 CDS Ajs_3821 NC_008782.1 4056009 4057601 D PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: rfr:Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle 4056009..4057601 Acidovorax sp. JS42 4670834 YP_988005.1 CDS Ajs_3822 NC_008782.1 4057591 4058388 D KEGG: rfr:Rfer_3709 hypothetical protein; hypothetical protein 4057591..4058388 Acidovorax sp. JS42 4670833 YP_988006.1 CDS Ajs_3823 NC_008782.1 4058393 4059106 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3710 sigma 28 (flagella/sporulation); FliA/WhiG family RNA polymerase sigma factor 4058393..4059106 Acidovorax sp. JS42 4670814 YP_988007.1 CDS Ajs_3824 NC_008782.1 4059318 4059674 R hypothetical protein complement(4059318..4059674) Acidovorax sp. JS42 4670793 YP_988008.1 CDS Ajs_3825 NC_008782.1 4059722 4060045 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: rfr:Rfer_3712 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM complement(4059722..4060045) Acidovorax sp. JS42 4670792 YP_988009.1 CDS Ajs_3826 NC_008782.1 4060139 4060891 R PFAM: SAF domain; KEGG: rfr:Rfer_3713 flageller protein FlgA; SAF domain-containing protein complement(4060139..4060891) Acidovorax sp. JS42 4670788 YP_988010.1 CDS Ajs_3827 NC_008782.1 4061078 4061533 D TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3714 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 4061078..4061533 Acidovorax sp. JS42 4670514 YP_988011.1 CDS Ajs_3828 NC_008782.1 4061555 4061959 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3715 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 4061555..4061959 Acidovorax sp. JS42 4670751 YP_988012.1 CDS Ajs_3829 NC_008782.1 4061981 4062631 D PFAM: flagellar hook capping protein; KEGG: rfr:Rfer_3716 flagellar hook capping protein; flagellar hook capping protein 4061981..4062631 Acidovorax sp. JS42 4670750 YP_988013.1 CDS Ajs_3830 NC_008782.1 4062660 4064276 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dar:Daro_0752 flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE; hypothetical protein 4062660..4064276 Acidovorax sp. JS42 4670741 YP_988014.1 CDS Ajs_3831 NC_008782.1 4064303 4065043 D TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3718 flagellar basal-body rod FlgF; flagellar basal-body rod protein FlgF 4064303..4065043 Acidovorax sp. JS42 4670736 YP_988015.1 CDS Ajs_3832 NC_008782.1 4065062 4065844 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3719 flagellar basal-body rod FlgG; flagellar basal-body rod protein FlgG 4065062..4065844 Acidovorax sp. JS42 4670734 YP_988016.1 CDS Ajs_3833 NC_008782.1 4065868 4066584 D PFAM: flagellar L-ring protein; KEGG: rfr:Rfer_3720 flagellar L-ring protein; flagellar L-ring protein 4065868..4066584 Acidovorax sp. JS42 4670726 YP_988017.1 CDS Ajs_3834 NC_008782.1 4066585 4067565 D KEGG: bba:Bd2659 hypothetical protein; hypothetical protein 4066585..4067565 Acidovorax sp. JS42 4670717 YP_988018.1 CDS flgI NC_008782.1 4067743 4068867 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 4067743..4068867 Acidovorax sp. JS42 4670715 YP_988019.1 CDS Ajs_3836 NC_008782.1 4068920 4069894 D KEGG: rfr:Rfer_3722 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 4068920..4069894 Acidovorax sp. JS42 4670711 YP_988020.1 CDS Ajs_3837 NC_008782.1 4069921 4071996 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3723 flagellar hook-associated protein; flagellar hook-associated protein FlgK 4069921..4071996 Acidovorax sp. JS42 4670509 YP_988021.1 CDS Ajs_3838 NC_008782.1 4072008 4073270 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like; flagellar hook-associated protein 3 4072008..4073270 Acidovorax sp. JS42 4670684 YP_988022.1 CDS Ajs_3839 NC_008782.1 4073359 4074570 D PFAM: HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain); putative signal transduction protein 4073359..4074570 Acidovorax sp. JS42 4670680 YP_988023.1 CDS Ajs_3840 NC_008782.1 4074587 4076047 D PFAM: sodium:neurotransmitter symporter; KEGG: rfr:Rfer_2107 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 4074587..4076047 Acidovorax sp. JS42 4670678 YP_988024.1 CDS Ajs_3841 NC_008782.1 4076186 4077706 D PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bam:Bamb_4936 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4076186..4077706 Acidovorax sp. JS42 4670676 YP_988025.1 CDS Ajs_3842 NC_008782.1 4077756 4079213 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(4077756..4079213) Acidovorax sp. JS42 4670666 YP_988026.1 CDS Ajs_3843 NC_008782.1 4079358 4079957 D KEGG: pol:Bpro_4234 hypothetical protein; hypothetical protein 4079358..4079957 Acidovorax sp. JS42 4670504 YP_988027.1 CDS Ajs_3844 NC_008782.1 4080026 4080970 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane; hypothetical protein 4080026..4080970 Acidovorax sp. JS42 4670639 YP_988028.1 CDS Ajs_3845 NC_008782.1 4081034 4082314 D PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II; GntR family transcriptional regulator 4081034..4082314 Acidovorax sp. JS42 4673717 YP_988029.1 CDS Ajs_3846 NC_008782.1 4082428 4083303 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pfl:PFL_2288 phenazine biosynthesis protein, PhzF family; PhzF family phenazine biosynthesis protein 4082428..4083303 Acidovorax sp. JS42 4670603 YP_988030.1 CDS Ajs_3847 NC_008782.1 4083300 4084274 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_4245 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 4083300..4084274 Acidovorax sp. JS42 4670609 YP_988031.1 CDS Ajs_3848 NC_008782.1 4084452 4085540 D KEGG: reu:Reut_B3888 hypothetical protein; hypothetical protein 4084452..4085540 Acidovorax sp. JS42 4670606 YP_988032.1 CDS Ajs_3849 NC_008782.1 4085574 4086752 D KEGG: reu:Reut_B3887 possible UreA/short-chain amide ABC transporter; putative UreA/short-chain amide ABC transporter 4085574..4086752 Acidovorax sp. JS42 4670608 YP_988033.1 CDS Ajs_3850 NC_008782.1 4087098 4088219 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0869 hypothetical protein; short-chain dehydrogenase/reductase SDR 4087098..4088219 Acidovorax sp. JS42 4670605 YP_988034.1 CDS Ajs_3851 NC_008782.1 4088280 4088951 D PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_3732 phosphoglycerate mutase; phosphoglycerate mutase 4088280..4088951 Acidovorax sp. JS42 4671183 YP_988035.1 CDS Ajs_3852 NC_008782.1 4089017 4089886 R PFAM: Creatininase; KEGG: rfr:Rfer_3746 creatininase; creatininase complement(4089017..4089886) Acidovorax sp. JS42 4671182 YP_988036.1 CDS Ajs_3853 NC_008782.1 4089895 4090647 D PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: bam:Bamb_2316 threonyl/alanyl tRNA synthetase, SAD; metal-dependent hydrolases related to alanyl-tRNA synthetase 4089895..4090647 Acidovorax sp. JS42 4671126 YP_988037.1 CDS Ajs_3854 NC_008782.1 4090700 4092916 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_0748 cytochrome c biogenesis protein, transmembrane protein; cytochrome c biogenesis protein transmembrane subunit 4090700..4092916 Acidovorax sp. JS42 4671260 YP_988038.1 CDS Ajs_3855 NC_008782.1 4092917 4093963 R PFAM: protein of unknown function DUF323; KEGG: rba:RB8026 hypothetical protein; hypothetical protein complement(4092917..4093963) Acidovorax sp. JS42 4671513 YP_988039.1 CDS Ajs_3856 NC_008782.1 4094145 4095395 D PFAM: Na+/H+ antiporter NhaA; KEGG: nwi:Nwi_2853 Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 4094145..4095395 Acidovorax sp. JS42 4671514 YP_988040.1 CDS Ajs_3857 NC_008782.1 4095445 4095960 D PFAM: CoA-binding domain protein; KEGG: rfr:Rfer_0747 CoA-binding; CoA-binding domain-containing protein 4095445..4095960 Acidovorax sp. JS42 4671512 YP_988041.1 CDS Ajs_3858 NC_008782.1 4096015 4097340 D KEGG: sus:Acid_5487 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase 4096015..4097340 Acidovorax sp. JS42 4671837 YP_988042.1 CDS Ajs_3859 NC_008782.1 4097393 4098376 R PFAM: Integral membrane protein TerC; KEGG: xcb:XC_4321 export protein; integral membrane protein TerC complement(4097393..4098376) Acidovorax sp. JS42 4671838 YP_988043.1 CDS Ajs_3860 NC_008782.1 4098504 4099430 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eba:ebA2202 transcriptional regulator, LysR family; LysR family transcriptional regulator 4098504..4099430 Acidovorax sp. JS42 4671395 YP_988044.1 CDS hemE NC_008782.1 4099532 4100644 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 4099532..4100644 Acidovorax sp. JS42 4671255 YP_988045.1 CDS Ajs_3862 NC_008782.1 4101249 4103468 D KEGG: rfr:Rfer_0822 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; primosomal protein N' 4101249..4103468 Acidovorax sp. JS42 4671736 YP_988046.1 CDS Ajs_3863 NC_008782.1 4103607 4104707 D KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase; L-asparaginases 4103607..4104707 Acidovorax sp. JS42 4671813 YP_988047.1 CDS Ajs_3864 NC_008782.1 4104916 4105872 R PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier; auxin efflux carrier complement(4104916..4105872) Acidovorax sp. JS42 4671941 YP_988048.1 CDS Ajs_3865 NC_008782.1 4106049 4108118 D PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase; UvrD/REP helicase 4106049..4108118 Acidovorax sp. JS42 4672048 YP_988049.1 CDS Ajs_3866 NC_008782.1 4108123 4108557 D KEGG: pol:Bpro_4283 hypothetical protein; hypothetical protein 4108123..4108557 Acidovorax sp. JS42 4671986 YP_988050.1 CDS Ajs_3867 NC_008782.1 4108563 4109780 D PFAM: phospholipase A1; KEGG: rfr:Rfer_0525 phospholipase; phospholipase A1 4108563..4109780 Acidovorax sp. JS42 4672469 YP_988051.1 CDS Ajs_3868 NC_008782.1 4110022 4110408 D KEGG: rfr:Rfer_0375 hypothetical protein; hypothetical protein 4110022..4110408 Acidovorax sp. JS42 4672468 YP_988052.1 CDS Ajs_3869 NC_008782.1 4110484 4110972 R PFAM: UspA domain protein; KEGG: rfr:Rfer_1666 UspA; UspA domain-containing protein complement(4110484..4110972) Acidovorax sp. JS42 4672470 YP_988053.1 CDS tgt NC_008782.1 4111075 4112247 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 4111075..4112247 Acidovorax sp. JS42 4672402 YP_988054.1 CDS Ajs_3871 NC_008782.1 4112327 4112938 D PFAM: protein of unknown function DUF72; KEGG: xac:XAC0605 hypothetical protein; hypothetical protein 4112327..4112938 Acidovorax sp. JS42 4672475 YP_988055.1 CDS Ajs_3872 NC_008782.1 4113074 4114234 R KEGG: pol:Bpro_0461 hypothetical protein; hypothetical protein complement(4113074..4114234) Acidovorax sp. JS42 4672522 YP_988056.1 CDS Ajs_3873 NC_008782.1 4114313 4115113 R KEGG: pol:Bpro_0460 hypothetical protein; hypothetical protein complement(4114313..4115113) Acidovorax sp. JS42 4672742 YP_988057.1 CDS Ajs_3874 NC_008782.1 4115116 4115574 R KEGG: pol:Bpro_0459 hypothetical protein; hypothetical protein complement(4115116..4115574) Acidovorax sp. JS42 4672744 YP_988058.1 CDS Ajs_3875 NC_008782.1 4115598 4116206 R KEGG: pol:Bpro_0458 hypothetical protein; hypothetical protein complement(4115598..4116206) Acidovorax sp. JS42 4673093 YP_988059.1 CDS Ajs_3876 NC_008782.1 4116209 4116784 R PFAM: regulatory protein, AsnC/Lrp family; KEGG: bpm:BURPS1710b_A0345 Lrp regulator; AsnC family transcriptional regulator complement(4116209..4116784) Acidovorax sp. JS42 4673096 YP_988060.1 CDS Ajs_3877 NC_008782.1 4116805 4117875 D catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase 4116805..4117875 Acidovorax sp. JS42 4673097 YP_988061.1 CDS Ajs_3878 NC_008782.1 4117915 4119870 R PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(4117915..4119870) Acidovorax sp. JS42 4672655 YP_988062.1 CDS Ajs_3879 NC_008782.1 4120005 4120748 D SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family; XRE family transcriptional regulator 4120005..4120748 Acidovorax sp. JS42 4672838 YP_988063.1 CDS Ajs_3880 NC_008782.1 4120767 4121207 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: ade:Adeh_1418 zinc-binding alcohol dehydrogenase; alcohol dehydrogenase complement(4120767..4121207) Acidovorax sp. JS42 4672919 YP_988064.1 CDS Ajs_3881 NC_008782.1 4121233 4121640 R KEGG: pol:Bpro_3367 hypothetical protein; hypothetical protein complement(4121233..4121640) Acidovorax sp. JS42 4673076 YP_988065.1 CDS Ajs_3882 NC_008782.1 4122003 4122419 D KEGG: bam:Bamb_3919 hypothetical protein; hypothetical protein 4122003..4122419 Acidovorax sp. JS42 4673179 YP_988066.1 CDS Ajs_3883 NC_008782.1 4122586 4123572 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0548 hypothetical protein; hypothetical protein 4122586..4123572 Acidovorax sp. JS42 4673321 YP_988067.1 CDS Ajs_3884 NC_008782.1 4123605 4125083 D PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_A1449 putative transmembrane oxidoreductase protein; FAD dependent oxidoreductase 4123605..4125083 Acidovorax sp. JS42 4673322 YP_988068.1 CDS Ajs_3885 NC_008782.1 4125080 4126189 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc1888 hypothetical protein; peroxidase-like protein 4125080..4126189 Acidovorax sp. JS42 4673319 YP_988069.1 CDS Ajs_3886 NC_008782.1 4126566 4127876 D PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_3842 FAD dependent oxidoreductase; D-amino-acid dehydrogenase 4126566..4127876 Acidovorax sp. JS42 4673848 YP_988070.1 CDS Ajs_3887 NC_008782.1 4127948 4129213 R PFAM: domain of unknown function DUF1745; KEGG: rfr:Rfer_0622 hypothetical protein; hypothetical protein complement(4127948..4129213) Acidovorax sp. JS42 4673777 YP_988071.1 CDS Ajs_3888 NC_008782.1 4129254 4130225 R KEGG: pol:Bpro_0449 hypothetical protein; hypothetical protein complement(4129254..4130225) Acidovorax sp. JS42 4673846 YP_988072.1 CDS Ajs_3889 NC_008782.1 4130446 4130865 D PFAM: histone family protein DNA-binding protein; KEGG: bte:BTH_II0701 DNA-binding protein BpH2; histone family protein DNA-binding protein 4130446..4130865 Acidovorax sp. JS42 4673963 YP_988073.1 CDS Ajs_3890 NC_008782.1 4130951 4131703 R KEGG: bja:bll4165 hypothetical protein; protein tyrosine/serine phosphatase complement(4130951..4131703) Acidovorax sp. JS42 4673952 YP_988074.1 CDS Ajs_3891 NC_008782.1 4132165 4132863 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: rfr:Rfer_3587 response regulator receiver domain protein; two component Fis family transcriptional regulator complement(4132165..4132863) Acidovorax sp. JS42 4674590 YP_988075.1 CDS Ajs_3892 NC_008782.1 4132900 4135188 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase complement(4132900..4135188) Acidovorax sp. JS42 4673696 YP_988076.1 CDS Ajs_3893 NC_008782.1 4135185 4135856 R KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein; hypothetical protein complement(4135185..4135856) Acidovorax sp. JS42 4673637 YP_988077.1 CDS Ajs_3894 NC_008782.1 4135807 4137180 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3590 sun protein; sun protein complement(4135807..4137180) Acidovorax sp. JS42 4673470 YP_988078.1 CDS Ajs_3895 NC_008782.1 4137177 4137755 R KEGG: pol:Bpro_4440 LemA; hypothetical protein complement(4137177..4137755) Acidovorax sp. JS42 4673211 YP_988079.1 CDS Ajs_3896 NC_008782.1 4137896 4142125 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4137896..4142125) Acidovorax sp. JS42 4673219 YP_988080.1 CDS rpoB NC_008782.1 4142256 4146380 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4142256..4146380) Acidovorax sp. JS42 4673222 YP_988081.1 CDS rplL NC_008782.1 4146654 4147034 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(4146654..4147034) Acidovorax sp. JS42 4672951 YP_988082.1 CDS rplJ NC_008782.1 4147084 4147590 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(4147084..4147590) Acidovorax sp. JS42 4672772 YP_988083.1 CDS rplA NC_008782.1 4147834 4148529 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(4147834..4148529) Acidovorax sp. JS42 4672641 YP_988084.1 CDS rplK NC_008782.1 4148530 4148961 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(4148530..4148961) Acidovorax sp. JS42 4672646 YP_988085.1 CDS Ajs_3902 NC_008782.1 4149071 4149661 R KEGG: rfr:Rfer_3597 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein nusG complement(4149071..4149661) Acidovorax sp. JS42 4672660 YP_988086.1 CDS secE NC_008782.1 4149661 4150044 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4149661..4150044) Acidovorax sp. JS42 4672021 YP_988087.1 CDS Ajs_3904 NC_008782.1 4150221 4151411 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(4150221..4151411) Acidovorax sp. JS42 4671930 YP_988088.1 CDS Ajs_3905 NC_008782.1 4152029 4152352 D PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911; transposase IS3/IS911 family protein 4152029..4152352 Acidovorax sp. JS42 4671423 YP_988089.1 CDS Ajs_3907 NC_008782.1 4159212 4160162 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(4159212..4160162) Acidovorax sp. JS42 4671560 YP_988090.1 CDS Ajs_3908 NC_008782.1 4160198 4161406 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcb:XC_4240 benzoate transporter; benzoate transporter complement(4160198..4161406) Acidovorax sp. JS42 4672118 YP_988091.1 CDS Ajs_3909 NC_008782.1 4161510 4163378 R PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter; K+ potassium transporter complement(4161510..4163378) Acidovorax sp. JS42 4672185 YP_988092.1 CDS Ajs_3910 NC_008782.1 4163519 4164814 R TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA; glutamate--cysteine ligase complement(4163519..4164814) Acidovorax sp. JS42 4672259 YP_988093.1 CDS Ajs_3911 NC_008782.1 4164879 4166345 R PFAM: cation transporter; KEGG: bbr:BB0267 Trk system potassium uptake protein; cation transporter complement(4164879..4166345) Acidovorax sp. JS42 4672341 YP_988094.1 CDS trkA NC_008782.1 4166361 4167815 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(4166361..4167815) Acidovorax sp. JS42 4672752 YP_988095.1 CDS proA NC_008782.1 4167880 4169160 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(4167880..4169160) Acidovorax sp. JS42 4672840 YP_988096.1 CDS Ajs_3914 NC_008782.1 4169251 4169544 D KEGG: pol:Bpro_3478 hypothetical protein; hypothetical protein 4169251..4169544 Acidovorax sp. JS42 4672875 YP_988097.1 CDS holA NC_008782.1 4169601 4170647 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(4169601..4170647) Acidovorax sp. JS42 4672901 YP_988098.1 CDS Ajs_3916 NC_008782.1 4170721 4171230 R PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B; rare lipoprotein B complement(4170721..4171230) Acidovorax sp. JS42 4673375 YP_988099.1 CDS leuS NC_008782.1 4171244 4173976 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(4171244..4173976) Acidovorax sp. JS42 4673423 YP_988100.1 CDS Ajs_3918 NC_008782.1 4174129 4175217 D PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase; transposase, IS4 family protein 4174129..4175217 Acidovorax sp. JS42 4673450 YP_988101.1 CDS Ajs_3919 NC_008782.1 4175445 4176725 D PFAM: MscS Mechanosensitive ion channel; KEGG: pfl:PFL_1548 mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 4175445..4176725 Acidovorax sp. JS42 4673491 YP_988102.1 CDS Ajs_3920 NC_008782.1 4176810 4177250 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(4176810..4177250) Acidovorax sp. JS42 4673584 YP_988103.1 CDS Ajs_3921 NC_008782.1 4177265 4177924 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(4177265..4177924) Acidovorax sp. JS42 4673648 YP_988104.1 CDS Ajs_3922 NC_008782.1 4177932 4178753 R PFAM: dihydrodipicolinate reductase; KEGG: pol:Bpro_4608 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(4177932..4178753) Acidovorax sp. JS42 4673307 YP_988105.1 CDS Ajs_3923 NC_008782.1 4178830 4179381 R PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA; SmpA/OmlA domain-containing protein complement(4178830..4179381) Acidovorax sp. JS42 4674023 YP_988106.1 CDS Ajs_3924 NC_008782.1 4179450 4179899 D PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family; ferric uptake regulator family protein 4179450..4179899 Acidovorax sp. JS42 4674293 YP_988107.1 CDS Ajs_3925 NC_008782.1 4179913 4180869 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(4179913..4180869) Acidovorax sp. JS42 4674371 YP_988108.1 CDS Ajs_3926 NC_008782.1 4180891 4181358 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN complement(4180891..4181358) Acidovorax sp. JS42 4674469 YP_988109.1 CDS Ajs_3927 NC_008782.1 4181492 4181845 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rfr:Rfer_0750 sigma 54 modulation protein/ribosomal protein S30EA; SSU ribosomal protein S30P / sigma 54 modulation protein complement(4181492..4181845) Acidovorax sp. JS42 4670593 YP_988110.1 CDS Ajs_3928 NC_008782.1 4182222 4183142 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 4182222..4183142 Acidovorax sp. JS42 4674025 YP_988111.1 CDS Ajs_3929 NC_008782.1 4183196 4185304 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2549 TonB-dependent siderophore receptor; TonB-dependent siderophore receptor complement(4183196..4185304) Acidovorax sp. JS42 4673915 YP_988112.1 CDS Ajs_3930 NC_008782.1 4185786 4186610 R PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein; hypothetical protein complement(4185786..4186610) Acidovorax sp. JS42 4673888 YP_988113.1 CDS Ajs_3931 NC_008782.1 4186652 4187560 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin; thioredoxin complement(4186652..4187560) Acidovorax sp. JS42 4673928 YP_988114.1 CDS Ajs_3932 NC_008782.1 4187745 4188326 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein; PfpI family intracellular peptidase 4187745..4188326 Acidovorax sp. JS42 4673911 YP_988115.1 CDS Ajs_3933 NC_008782.1 4188426 4188803 D KEGG: rso:RSc0415 hypothetical protein; hypothetical protein 4188426..4188803 Acidovorax sp. JS42 4673836 YP_988116.1 CDS Ajs_3934 NC_008782.1 4188875 4189372 D KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 4188875..4189372 Acidovorax sp. JS42 4673775 YP_988117.1 CDS Ajs_3935 NC_008782.1 4189369 4190544 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase 4189369..4190544 Acidovorax sp. JS42 4673731 YP_988118.1 CDS Ajs_3936 NC_008782.1 4190556 4191554 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC; translation factor SUA5 4190556..4191554 Acidovorax sp. JS42 4673625 YP_988119.1 CDS Ajs_3937 NC_008782.1 4191627 4192580 D KEGG: bpm:BURPS1710b_1005 lipase; lipase 4191627..4192580 Acidovorax sp. JS42 4673556 YP_988120.1 CDS Ajs_3938 NC_008782.1 4192724 4193266 R KEGG: rfr:Rfer_0193 hypothetical protein; hypothetical protein complement(4192724..4193266) Acidovorax sp. JS42 4673455 YP_988121.1 CDS Ajs_3939 NC_008782.1 4193452 4194933 R TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; D-alanyl-D-alanine carboxypeptidase PBP3 complement(4193452..4194933) Acidovorax sp. JS42 4673968 YP_988122.1 CDS Ajs_3940 NC_008782.1 4194984 4195694 D PFAM: peptidase M22, glycoprotease; KEGG: rfr:Rfer_0189 peptidase M22, glycoprotease; peptidase M22, glycoprotease 4194984..4195694 Acidovorax sp. JS42 4673206 YP_988123.1 CDS Ajs_3941 NC_008782.1 4195691 4196167 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_0188 ribosomal-protein-alanine acetyltransferase; SSU ribosomal protein S18P alanine acetyltransferase 4195691..4196167 Acidovorax sp. JS42 4673138 YP_988124.1 CDS Ajs_3942 NC_008782.1 4196164 4196940 D KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 4196164..4196940 Acidovorax sp. JS42 4673079 YP_988125.1 CDS Ajs_3943 NC_008782.1 4197120 4197614 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4197120..4197614 Acidovorax sp. JS42 4673055 YP_988126.1 CDS Ajs_3944 NC_008782.1 4197655 4199502 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 4197655..4199502 Acidovorax sp. JS42 4672921 YP_988127.1 CDS Ajs_3945 NC_008782.1 4199626 4200918 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4199626..4200918 Acidovorax sp. JS42 4672878 YP_988128.1 CDS Ajs_3946 NC_008782.1 4201008 4201262 D PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS; hypothetical protein 4201008..4201262 Acidovorax sp. JS42 4672597 YP_988129.1 CDS Ajs_3947 NC_008782.1 4201325 4201591 D KEGG: rfr:Rfer_2847 hypothetical protein; hypothetical protein 4201325..4201591 Acidovorax sp. JS42 4674375 YP_988130.1 CDS Ajs_3948 NC_008782.1 4201823 4202809 D TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 4201823..4202809 Acidovorax sp. JS42 4672502 YP_988131.1 CDS Ajs_3949 NC_008782.1 4203022 4203777 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(4203022..4203777) Acidovorax sp. JS42 4672527 YP_988132.1 CDS Ajs_3950 NC_008782.1 4203863 4205542 R PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(4203863..4205542) Acidovorax sp. JS42 4672423 YP_988133.1 CDS Ajs_3951 NC_008782.1 4205672 4207096 R PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit; NAD(P) transhydrogenase subunit beta complement(4205672..4207096) Acidovorax sp. JS42 4672036 YP_988134.1 CDS Ajs_3952 NC_008782.1 4207108 4207437 R KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2; NAD(P) transhydrogenase subunit alpha part 2 complement(4207108..4207437) Acidovorax sp. JS42 4672245 YP_988135.1 CDS Ajs_3953 NC_008782.1 4207486 4208196 R hypothetical protein complement(4207486..4208196) Acidovorax sp. JS42 4672191 YP_988136.1 CDS Ajs_3954 NC_008782.1 4208230 4209345 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific); NAD(P)(+) transhydrogenase complement(4208230..4209345) Acidovorax sp. JS42 4671916 YP_988137.1 CDS Ajs_3955 NC_008782.1 4209557 4210621 R KEGG: rso:RSc0573 probable fructose-bisphosphate aldolase protein; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase complement(4209557..4210621) Acidovorax sp. JS42 4672076 YP_988138.1 CDS Ajs_3956 NC_008782.1 4210775 4212211 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(4210775..4212211) Acidovorax sp. JS42 4672052 YP_988139.1 CDS Ajs_3957 NC_008782.1 4212295 4214460 R PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rfr:Rfer_0086 peptidase M24; aminopeptidase P complement(4212295..4214460) Acidovorax sp. JS42 4674254 YP_988140.1 CDS Ajs_3958 NC_008782.1 4214616 4215431 R PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase; nucleotidyl transferase complement(4214616..4215431) Acidovorax sp. JS42 4671914 YP_988141.1 CDS Ajs_3959 NC_008782.1 4215595 4217631 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase; transketolase 4215595..4217631 Acidovorax sp. JS42 4671881 YP_988142.1 CDS Ajs_3960 NC_008782.1 4217685 4218686 D KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 4217685..4218686 Acidovorax sp. JS42 4671887 YP_988143.1 CDS Ajs_3961 NC_008782.1 4218831 4219391 D PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein; hypothetical protein 4218831..4219391 Acidovorax sp. JS42 4671819 YP_988144.1 CDS Ajs_3962 NC_008782.1 4219489 4219833 R KEGG: rfr:Rfer_2154 ribosomal subunit interface protein, putative; ribosomal subunit Interface protein complement(4219489..4219833) Acidovorax sp. JS42 4671805 YP_988145.1 CDS Ajs_3963 NC_008782.1 4220005 4220922 D PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26; peptidase C26 4220005..4220922 Acidovorax sp. JS42 4671793 YP_988146.1 CDS Ajs_3964 NC_008782.1 4220980 4221453 R KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(4220980..4221453) Acidovorax sp. JS42 4671764 YP_988147.1 CDS Ajs_3965 NC_008782.1 4221565 4222608 R PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like; pirin domain-containing protein complement(4221565..4222608) Acidovorax sp. JS42 4671712 YP_988148.1 CDS Ajs_3966 NC_008782.1 4222872 4223300 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_4772 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase complement(4222872..4223300) Acidovorax sp. JS42 4671623 YP_988149.1 CDS Ajs_3967 NC_008782.1 4223343 4223762 R hypothetical protein complement(4223343..4223762) Acidovorax sp. JS42 4671580 YP_988150.1 CDS Ajs_3968 NC_008782.1 4223942 4224946 R PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein; short-chain dehydrogenase/reductase SDR complement(4223942..4224946) Acidovorax sp. JS42 4674218 YP_988151.1 CDS Ajs_3969 NC_008782.1 4225118 4225678 R KEGG: rfr:Rfer_4031 hypothetical protein; hypothetical protein complement(4225118..4225678) Acidovorax sp. JS42 4671203 YP_988152.1 CDS Ajs_3970 NC_008782.1 4225743 4226504 R PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein; DTW domain-containing protein complement(4225743..4226504) Acidovorax sp. JS42 4671285 YP_988153.1 CDS Ajs_3971 NC_008782.1 4226688 4227593 D PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B3889 regulatory protein, IclR; IclR family transcriptional regulator 4226688..4227593 Acidovorax sp. JS42 4671234 YP_988154.1 CDS Ajs_3972 NC_008782.1 4227590 4228741 D KEGG: reu:Reut_B3886 thiolase; thiolase 4227590..4228741 Acidovorax sp. JS42 4671180 YP_988155.1 CDS Ajs_3973 NC_008782.1 4228747 4229124 D PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3885 protein of unknown function DUF35; hypothetical protein 4228747..4229124 Acidovorax sp. JS42 4671099 YP_988156.1 CDS Ajs_3974 NC_008782.1 4229306 4230292 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein 4229306..4230292 Acidovorax sp. JS42 4671078 YP_988157.1 CDS Ajs_3975 NC_008782.1 4230496 4232583 D PFAM: CoA-binding domain protein; KEGG: reu:Reut_B3883 CoA-binding; CoA-binding domain-containing protein 4230496..4232583 Acidovorax sp. JS42 4670897 YP_988158.1 CDS Ajs_3976 NC_008782.1 4232803 4233501 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pol:Bpro_1375 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(4232803..4233501) Acidovorax sp. JS42 4670766 YP_988159.1 CDS fabG NC_008782.1 4233516 4234277 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(4233516..4234277) Acidovorax sp. JS42 4670714 YP_988160.1 CDS Ajs_3978 NC_008782.1 4234296 4234688 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0888 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(4234296..4234688) Acidovorax sp. JS42 4670669 YP_988161.1 CDS Ajs_3979 NC_008782.1 4235570 4236160 R hypothetical protein complement(4235570..4236160) Acidovorax sp. JS42 4670597 YP_988162.1 CDS Ajs_3980 NC_008782.1 4236243 4237565 R KEGG: pen:PSEEN0757 hypothetical protein; hypothetical protein complement(4236243..4237565) Acidovorax sp. JS42 4671330 YP_988163.1 CDS Ajs_3981 NC_008782.1 4237635 4238033 R hypothetical protein complement(4237635..4238033) Acidovorax sp. JS42 4670660 YP_988164.1 CDS Ajs_3982 NC_008782.1 4238040 4238285 R PFAM: protein of unknown function DUF1010; hypothetical protein complement(4238040..4238285) Acidovorax sp. JS42 4670683 YP_988165.1 CDS Ajs_3983 NC_008782.1 4238411 4238923 R KEGG: rso:RSc3250 probable signal peptide protein; putative signal peptide protein complement(4238411..4238923) Acidovorax sp. JS42 4670520 YP_988166.1 CDS Ajs_3984 NC_008782.1 4239000 4239329 R KEGG: rpa:RPA2254 hypothetical protein; hypothetical protein complement(4239000..4239329) Acidovorax sp. JS42 4670887 YP_988167.1 CDS Ajs_3985 NC_008782.1 4240104 4240643 R PFAM: protein of unknown function DUF88; KEGG: cvi:CV0746 hypothetical protein; hypothetical protein complement(4240104..4240643) Acidovorax sp. JS42 4670968 YP_988168.1 CDS Ajs_3988 NC_008782.1 4241756 4241929 R KEGG: rfr:Rfer_4005 hypothetical protein; hypothetical protein complement(4241756..4241929) Acidovorax sp. JS42 4671066 YP_988169.1 CDS Ajs_3989 NC_008782.1 4242197 4242547 R hypothetical protein complement(4242197..4242547) Acidovorax sp. JS42 4671072 YP_988170.1 CDS Ajs_3990 NC_008782.1 4242552 4245497 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(4242552..4245497) Acidovorax sp. JS42 4671076 YP_988171.1 CDS Ajs_3991 NC_008782.1 4245608 4246249 D PFAM: nuclear protein SET; KEGG: rfr:Rfer_3954 nuclear protein SET; nuclear protein SET 4245608..4246249 Acidovorax sp. JS42 4671082 YP_988172.1 CDS Ajs_3992 NC_008782.1 4246246 4247103 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase; biotin--acetyl-CoA-carboxylase ligase 4246246..4247103 Acidovorax sp. JS42 4671087 YP_988173.1 CDS Ajs_3993 NC_008782.1 4247162 4247893 D PFAM: Sporulation domain protein; KEGG: rfr:Rfer_3952 hypothetical protein; sporulation domain-containing protein 4247162..4247893 Acidovorax sp. JS42 4671102 YP_988174.1 CDS Ajs_3994 NC_008782.1 4248015 4248983 R PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1948 hypothetical protein; hypothetical protein complement(4248015..4248983) Acidovorax sp. JS42 4671108 YP_988175.1 CDS Ajs_3995 NC_008782.1 4249285 4250223 R PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(4249285..4250223) Acidovorax sp. JS42 4671109 YP_988176.1 CDS Ajs_3996 NC_008782.1 4250242 4251207 R PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0521 uncharacterized protein UPF0065; hypothetical protein complement(4250242..4251207) Acidovorax sp. JS42 4671116 YP_988177.1 CDS Ajs_3997 NC_008782.1 4251318 4252244 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_0983 transcriptional regulator, LysR family; LysR family transcriptional regulator 4251318..4252244 Acidovorax sp. JS42 4671135 YP_988178.1 CDS Ajs_3998 NC_008782.1 4252325 4253806 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_3951 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4252325..4253806) Acidovorax sp. JS42 4671136 YP_988179.1 CDS Ajs_3999 NC_008782.1 4253850 4254524 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family; two component transcriptional regulator complement(4253850..4254524) Acidovorax sp. JS42 4671139 YP_988180.1 CDS Ajs_4000 NC_008782.1 4254574 4255140 R PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family; MarR family transcriptional regulator complement(4254574..4255140) Acidovorax sp. JS42 4671162 YP_988181.1 CDS Ajs_4001 NC_008782.1 4255218 4256339 D KEGG: rfr:Rfer_3948 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recombination protein RecA 4255218..4256339 Acidovorax sp. JS42 4671231 YP_988182.1 CDS Ajs_4002 NC_008782.1 4256421 4256876 D KEGG: pol:Bpro_4684 regulatory protein RecX; regulatory protein RecX 4256421..4256876 Acidovorax sp. JS42 4671300 YP_988183.1 CDS Ajs_4003 NC_008782.1 4257110 4259464 R KEGG: rfr:Rfer_3864 hypothetical protein; hypothetical protein complement(4257110..4259464) Acidovorax sp. JS42 4671345 YP_988184.1 CDS secF NC_008782.1 4259548 4260501 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(4259548..4260501) Acidovorax sp. JS42 4671620 YP_988185.1 CDS secD NC_008782.1 4260516 4262414 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(4260516..4262414) Acidovorax sp. JS42 4671625 YP_988186.1 CDS Ajs_4006 NC_008782.1 4262509 4262838 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit; protein translocase subunit yajC complement(4262509..4262838) Acidovorax sp. JS42 4671636 YP_988187.1 CDS Ajs_4007 NC_008782.1 4263233 4264363 D PFAM: MscS Mechanosensitive ion channel; KEGG: ppu:PP_3360 hypothetical protein; mechanosensitive ion channel protein MscS 4263233..4264363 Acidovorax sp. JS42 4671665 YP_988188.1 CDS Ajs_4008 NC_008782.1 4264464 4268084 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(4264464..4268084) Acidovorax sp. JS42 4671683 YP_988189.1 CDS Ajs_4009 NC_008782.1 4268261 4268767 D PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 4268261..4268767 Acidovorax sp. JS42 4671705 YP_988190.1 CDS Ajs_4010 NC_008782.1 4269069 4269926 D KEGG: bja:blr4317 hypothetical protein; hypothetical protein 4269069..4269926 Acidovorax sp. JS42 4671755 YP_988191.1 CDS Ajs_4011 NC_008782.1 4269923 4271095 D KEGG: hch:HCH_04199 hypothetical protein; hypothetical protein 4269923..4271095 Acidovorax sp. JS42 4671794 YP_988192.1 CDS Ajs_4012 NC_008782.1 4271170 4272879 D PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE; hypothetical protein 4271170..4272879 Acidovorax sp. JS42 4671795 YP_988193.1 CDS Ajs_4013 NC_008782.1 4272988 4274196 R PFAM: MltA domain protein; 3D domain protein; KEGG: rfr:Rfer_0365 MltA; MltA domain-containing protein complement(4272988..4274196) Acidovorax sp. JS42 4671831 YP_988194.1 CDS Ajs_4014 NC_008782.1 4274466 4275116 D PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_0206 OmpA/MotB; OmpA/MotB domain-containing protein 4274466..4275116 Acidovorax sp. JS42 4671856 YP_988195.1 CDS Ajs_4015 NC_008782.1 4275207 4275857 R PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family; response regulator receiver protein complement(4275207..4275857) Acidovorax sp. JS42 4671924 YP_988196.1 CDS Ajs_4016 NC_008782.1 4275857 4278007 R KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(4275857..4278007) Acidovorax sp. JS42 4672564 YP_988197.1 CDS Ajs_4017 NC_008782.1 4278007 4278822 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rfr:Rfer_0849 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4278007..4278822) Acidovorax sp. JS42 4672530 YP_988198.1 CDS Ajs_4018 NC_008782.1 4278819 4283075 R KEGG: rfr:Rfer_0366 hypothetical protein; hypothetical protein complement(4278819..4283075) Acidovorax sp. JS42 4672064 YP_988199.1 CDS Ajs_4019 NC_008782.1 4283198 4285936 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rfr:Rfer_0367 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 4283198..4285936 Acidovorax sp. JS42 4672066 YP_988200.1 CDS Ajs_4020 NC_008782.1 4286085 4286861 D PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family; TetR family transcriptional regulator 4286085..4286861 Acidovorax sp. JS42 4671889 YP_988201.1 CDS Ajs_4021 NC_008782.1 4286858 4288309 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT; RND efflux system outer membrane lipoprotein 4286858..4288309 Acidovorax sp. JS42 4671907 YP_988202.1 CDS Ajs_4022 NC_008782.1 4288326 4289498 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD; RND family efflux transporter MFP subunit 4288326..4289498 Acidovorax sp. JS42 4672094 YP_988203.1 CDS Ajs_4023 NC_008782.1 4289508 4292603 D PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; acriflavin resistance protein 4289508..4292603 Acidovorax sp. JS42 4671870 YP_988204.1 CDS Ajs_4024 NC_008782.1 4292764 4293405 D PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase; glutathione peroxidase 4292764..4293405 Acidovorax sp. JS42 4672179 YP_988205.1 CDS Ajs_4025 NC_008782.1 4293700 4294314 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_4050 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(4293700..4294314) Acidovorax sp. JS42 4672183 YP_988206.1 CDS Ajs_4026 NC_008782.1 4294433 4295812 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 4294433..4295812 Acidovorax sp. JS42 4672197 YP_988207.1 CDS Ajs_4027 NC_008782.1 4295889 4296449 D PFAM: YaeQ family protein; KEGG: rfr:Rfer_4048 YaeQ; YaeQ family protein 4295889..4296449 Acidovorax sp. JS42 4672003 YP_988208.1 CDS Ajs_4028 NC_008782.1 4296523 4296828 R KEGG: pol:Bpro_4663 hypothetical protein; hypothetical protein complement(4296523..4296828) Acidovorax sp. JS42 4672335 YP_988209.1 CDS Ajs_4029 NC_008782.1 4296869 4297312 R PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289; hypothetical protein complement(4296869..4297312) Acidovorax sp. JS42 4672027 YP_988210.1 CDS Ajs_4030 NC_008782.1 4297834 4298565 D PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC; integral membrane protein TerC 4297834..4298565 Acidovorax sp. JS42 4672388 YP_988211.1 CDS Ajs_4031 NC_008782.1 4298614 4299087 D KEGG: pol:Bpro_4667 hypothetical protein; hypothetical protein 4298614..4299087 Acidovorax sp. JS42 4672389 YP_988212.1 CDS Ajs_4032 NC_008782.1 4299152 4299586 D PFAM: membrane protein of unknown function; KEGG: rfr:Rfer_4042 membrane protein of unknown function; hypothetical protein 4299152..4299586 Acidovorax sp. JS42 4672415 YP_988213.1 CDS Ajs_4033 NC_008782.1 4299554 4301119 R PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_4041 peptidase M48, Ste24p; peptidase M48, Ste24p complement(4299554..4301119) Acidovorax sp. JS42 4672417 YP_988214.1 CDS Ajs_4034 NC_008782.1 4301231 4301716 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C; GTP cyclohydrolase subunit MoaC 4301231..4301716 Acidovorax sp. JS42 4672458 YP_988215.1 CDS Ajs_4035 NC_008782.1 4301878 4302189 R PFAM: DNA polymerase, beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein; DNA polymerase subunit beta complement(4301878..4302189) Acidovorax sp. JS42 4672516 YP_988216.1 CDS Ajs_4036 NC_008782.1 4302186 4302635 R TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: xom:XOO_3261 nucleotidyltransferase; HI0074 family nucleotidyltransferase substrate-binding protein complement(4302186..4302635) Acidovorax sp. JS42 4673130 YP_988217.1 CDS Ajs_4037 NC_008782.1 4302839 4303180 R KEGG: rfr:Rfer_4041 peptidase M48, Ste24p; hypothetical protein complement(4302839..4303180) Acidovorax sp. JS42 4673095 YP_988218.1 CDS Ajs_4038 NC_008782.1 4303292 4303792 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 4303292..4303792 Acidovorax sp. JS42 4672759 YP_988219.1 CDS Ajs_4039 NC_008782.1 4304003 4304761 R KEGG: pol:Bpro_4670 FimB; FimB complement(4304003..4304761) Acidovorax sp. JS42 4672760 YP_988220.1 CDS Ajs_4040 NC_008782.1 4304973 4305509 R PFAM: Fimbrial protein pilin; KEGG: rfr:Rfer_1265 methylation; fimbrial protein pilin complement(4304973..4305509) Acidovorax sp. JS42 4672798 YP_988221.1 CDS Ajs_4041 NC_008782.1 4306085 4307311 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 4306085..4307311 Acidovorax sp. JS42 4672532 YP_988222.1 CDS Ajs_4042 NC_008782.1 4307709 4308935 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase; transposase IS116/IS110/IS902 family protein 4307709..4308935 Acidovorax sp. JS42 4672500 YP_988223.1 CDS Ajs_4043 NC_008782.1 4309077 4309712 R PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein; FHA domain-containing protein complement(4309077..4309712) Acidovorax sp. JS42 4672843 YP_988224.1 CDS Ajs_4044 NC_008782.1 4309817 4310632 R PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: rfr:Rfer_3941 protein serine/threonine phosphatases; protein phosphatase 2C domain-containing protein complement(4309817..4310632) Acidovorax sp. JS42 4672863 YP_988225.1 CDS Ajs_4045 NC_008782.1 4310915 4311598 R PFAM: Integral membrane protein TerC; KEGG: bbr:BB2083 integral membrane protein; integral membrane protein TerC complement(4310915..4311598) Acidovorax sp. JS42 4672866 YP_988226.1 CDS Ajs_4046 NC_008782.1 4311754 4312647 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(4311754..4312647) Acidovorax sp. JS42 4672917 YP_988227.1 CDS sucC NC_008782.1 4312667 4313827 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(4312667..4313827) Acidovorax sp. JS42 4672933 YP_988228.1 CDS Ajs_4048 NC_008782.1 4314004 4314936 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 4314004..4314936 Acidovorax sp. JS42 4672736 YP_988229.1 CDS Ajs_4049 NC_008782.1 4315147 4316307 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rfr:Rfer_3862 DNA processing protein DprA, putative; Fis family transcriptional regulator complement(4315147..4316307) Acidovorax sp. JS42 4673054 YP_988230.1 CDS Ajs_4050 NC_008782.1 4316360 4317640 R PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(4316360..4317640) Acidovorax sp. JS42 4673078 YP_988231.1 CDS Ajs_4051 NC_008782.1 4317822 4318334 D KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 4317822..4318334 Acidovorax sp. JS42 4673118 YP_988232.1 CDS Ajs_4052 NC_008782.1 4318331 4318846 D KEGG: pol:Bpro_0388 putative lipoprotein transmembrane; putative lipoprotein transmembrane 4318331..4318846 Acidovorax sp. JS42 4674708 YP_988233.1 CDS Ajs_4053 NC_008782.1 4318880 4319851 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 4318880..4319851 Acidovorax sp. JS42 4673343 YP_988234.1 CDS Ajs_4054 NC_008782.1 4319848 4320597 D PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like; AzlC family protein 4319848..4320597 Acidovorax sp. JS42 4673348 YP_988235.1 CDS Ajs_4055 NC_008782.1 4320594 4320929 D PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport; branched-chain amino acid transport 4320594..4320929 Acidovorax sp. JS42 4673433 YP_988236.1 CDS pgk NC_008782.1 4321019 4322212 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 4321019..4322212 Acidovorax sp. JS42 4673443 YP_988237.1 CDS Ajs_4057 NC_008782.1 4322280 4323179 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4618 protein of unknown function DUF6, transmembrane; hypothetical protein complement(4322280..4323179) Acidovorax sp. JS42 4673478 YP_988238.1 CDS pyrF NC_008782.1 4323191 4324111 D type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4323191..4324111 Acidovorax sp. JS42 4673518 YP_988239.1 CDS Ajs_4059 NC_008782.1 4324142 4324414 D KEGG: bbr:BB4564 putative LysR-family transcriptional regulator; LysR family transcriptional regulator 4324142..4324414 Acidovorax sp. JS42 4673602 YP_988240.1 CDS Ajs_4060 NC_008782.1 4324524 4325528 D PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4092 hypothetical protein; hypothetical protein 4324524..4325528 Acidovorax sp. JS42 4673699 YP_988241.1 CDS Ajs_4061 NC_008782.1 4325525 4326499 D KEGG: bbr:BB4562 hypothetical protein; hypothetical protein 4325525..4326499 Acidovorax sp. JS42 4673718 YP_988242.1 CDS Ajs_4062 NC_008782.1 4327080 4329041 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4327080..4329041 Acidovorax sp. JS42 4673745 YP_988243.1 CDS Ajs_4063 NC_008782.1 4329103 4330596 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pae:PA0783 sodium/proline symporter PutP; sodium/proline symporter complement(4329103..4330596) Acidovorax sp. JS42 4673769 YP_988244.1 CDS Ajs_4064 NC_008782.1 4330831 4333920 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(4330831..4333920) Acidovorax sp. JS42 4673778 YP_988245.1 CDS Ajs_4065 NC_008782.1 4334211 4335392 D PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1; major facilitator superfamily transporter 4334211..4335392 Acidovorax sp. JS42 4673780 YP_988246.1 CDS Ajs_4066 NC_008782.1 4335527 4336072 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein; single-strand-binding protein 4335527..4336072 Acidovorax sp. JS42 4673795 YP_988247.1 CDS Ajs_4067 NC_008782.1 4336180 4337841 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease; L-lactate transport complement(4336180..4337841) Acidovorax sp. JS42 4673797 YP_988248.1 CDS mnmA NC_008782.1 4338080 4339219 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(4338080..4339219) Acidovorax sp. JS42 4673811 YP_988249.1 CDS Ajs_4069 NC_008782.1 4339368 4340342 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4206 transcriptional regulator, LysR family; LysR family transcriptional regulator 4339368..4340342 Acidovorax sp. JS42 4673814 YP_988250.1 CDS Ajs_4070 NC_008782.1 4340502 4341941 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 4340502..4341941 Acidovorax sp. JS42 4673816 YP_988251.1 CDS Ajs_4071 NC_008782.1 4341947 4343173 D TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B; CitB domain-containing protein 4341947..4343173 Acidovorax sp. JS42 4673820 YP_988252.1 CDS Ajs_4072 NC_008782.1 4343510 4344589 R PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit complement(4343510..4344589) Acidovorax sp. JS42 4673840 YP_988253.1 CDS Ajs_4073 NC_008782.1 4344708 4345685 D PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein; hypothetical protein 4344708..4345685 Acidovorax sp. JS42 4673843 YP_988254.1 CDS Ajs_4074 NC_008782.1 4345827 4346312 R PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase; NUDIX hydrolase complement(4345827..4346312) Acidovorax sp. JS42 4673862 YP_988255.1 CDS Ajs_4075 NC_008782.1 4346823 4349000 D TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpm:BURPS1710b_A0821 TonB-dependent copper receptor; TonB-dependent copper receptor 4346823..4349000 Acidovorax sp. JS42 4673889 YP_988256.1 CDS Ajs_4076 NC_008782.1 4349107 4349607 R PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB4270 putative acetyltransferase; GCN5-like N-acetyltransferase complement(4349107..4349607) Acidovorax sp. JS42 4673958 YP_988257.1 CDS Ajs_4077 NC_008782.1 4349604 4350320 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(4349604..4350320) Acidovorax sp. JS42 4673956 YP_988258.1 CDS Ajs_4078 NC_008782.1 4350451 4353267 R KEGG: mca:MCA0551 hypothetical protein; hypothetical protein complement(4350451..4353267) Acidovorax sp. JS42 4673997 YP_988259.1 CDS Ajs_4079 NC_008782.1 4353274 4353876 R KEGG: mhu:Mhun_1889 hypothetical protein; hypothetical protein complement(4353274..4353876) Acidovorax sp. JS42 4674142 YP_988260.1 CDS Ajs_4080 NC_008782.1 4353879 4355072 R KEGG: gvi:glr1927 unknown protein; hypothetical protein complement(4353879..4355072) Acidovorax sp. JS42 4674127 YP_988261.1 CDS Ajs_4081 NC_008782.1 4355050 4358361 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT1729 DNA methylase, putative; DNA methylase N-4/N-6 domain-containing protein complement(4355050..4358361) Acidovorax sp. JS42 4674121 YP_988262.1 CDS Ajs_4082 NC_008782.1 4358718 4360085 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eba:ebA7143 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase complement(4358718..4360085) Acidovorax sp. JS42 4674089 YP_988263.1 CDS Ajs_4083 NC_008782.1 4360082 4360753 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA7146 two component response regulator; two component transcriptional regulator complement(4360082..4360753) Acidovorax sp. JS42 4674039 YP_988264.1 CDS Ajs_4084 NC_008782.1 4360753 4361082 R KEGG: mag:amb0190 predicted membrane protein; membrane protein complement(4360753..4361082) Acidovorax sp. JS42 4670575 YP_988265.1 CDS Ajs_4085 NC_008782.1 4361230 4362699 D PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: eba:ebA7152 putative flavocytochrome subuit of an oxidoreductase; ferric reductase domain-containing protein 4361230..4362699 Acidovorax sp. JS42 4674677 YP_988266.1 CDS Ajs_4086 NC_008782.1 4362713 4363048 D KEGG: reu:Reut_B5167 hypothetical protein; hypothetical protein 4362713..4363048 Acidovorax sp. JS42 4674605 YP_988267.1 CDS Ajs_4087 NC_008782.1 4363088 4363570 D KEGG: bmb:BruAb2_0227 hypothetical protein; hypothetical protein 4363088..4363570 Acidovorax sp. JS42 4674592 YP_988268.1 CDS Ajs_4088 NC_008782.1 4363585 4365762 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: bms:BRA0233 oxidoreductase, FAD-binding, putative; FAD/NAD(P)-binding oxidoreductase subunit 4363585..4365762 Acidovorax sp. JS42 4674594 YP_988269.1 CDS Ajs_4089 NC_008782.1 4365743 4366726 D PFAM: ApbE family lipoprotein; KEGG: bmb:BruAb2_0229 ApbE family protein; ApbE family lipoprotein 4365743..4366726 Acidovorax sp. JS42 4674431 YP_988270.1 CDS Ajs_4090 NC_008782.1 4366829 4367146 D hypothetical protein 4366829..4367146 Acidovorax sp. JS42 4674356 YP_988271.1 CDS Ajs_4091 NC_008782.1 4367183 4367650 R hypothetical protein complement(4367183..4367650) Acidovorax sp. JS42 4674327 YP_988272.1 CDS Ajs_4093 NC_008782.1 4368551 4370302 R KEGG: dar:Daro_3715 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(4368551..4370302) Acidovorax sp. JS42 4674245 YP_988273.1 CDS Ajs_4094 NC_008782.1 4370382 4371947 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(4370382..4371947) Acidovorax sp. JS42 4674144 YP_988274.1 CDS Ajs_4095 NC_008782.1 4371944 4374643 R PFAM: type III restriction enzyme, res subunit; KEGG: gme:Gmet_0675 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(4371944..4374643) Acidovorax sp. JS42 4674165 YP_988275.1 CDS Ajs_4096 NC_008782.1 4374903 4376540 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase; DNA methylase N-4/N-6 domain-containing protein complement(4374903..4376540) Acidovorax sp. JS42 4674090 YP_988276.1 CDS Ajs_4097 NC_008782.1 4376620 4376841 R PFAM: protein of unknown function DUF350; KEGG: aba:Acid345_0110 protein of unknown function DUF350; hypothetical protein complement(4376620..4376841) Acidovorax sp. JS42 4673711 YP_988277.1 CDS Ajs_4098 NC_008782.1 4376891 4378387 R KEGG: rme:Rmet_3458 putative transmembrane protein; hypothetical protein complement(4376891..4378387) Acidovorax sp. JS42 4673685 YP_988278.1 CDS Ajs_4099 NC_008782.1 4378470 4379585 R KEGG: dar:Daro_3752 putative transmembrane protein; hypothetical protein complement(4378470..4379585) Acidovorax sp. JS42 4673682 YP_988279.1 CDS Ajs_4100 NC_008782.1 4379691 4379957 D KEGG: pol:Bpro_4856 hypothetical protein; hypothetical protein 4379691..4379957 Acidovorax sp. JS42 4673675 YP_988280.1 CDS Ajs_4101 NC_008782.1 4380397 4380702 R PFAM: flagellar basal body rod protein; KEGG: xom:XOO_2971 hypothetical protein; flagellar basal body rod protein complement(4380397..4380702) Acidovorax sp. JS42 4673659 YP_988281.1 CDS Ajs_4102 NC_008782.1 4380757 4381695 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4285 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4380757..4381695) Acidovorax sp. JS42 4673656 YP_988282.1 CDS Ajs_4103 NC_008782.1 4381710 4383140 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 4381710..4383140 Acidovorax sp. JS42 4673635 YP_988283.1 CDS Ajs_4104 NC_008782.1 4383208 4384725 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0372 methylmalonate-semialdehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4383208..4384725 Acidovorax sp. JS42 4673620 YP_988284.1 CDS Ajs_4106 NC_008782.1 4386204 4388516 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 4386204..4388516 Acidovorax sp. JS42 4673610 YP_988285.1 CDS Ajs_4107 NC_008782.1 4388671 4389075 D PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rfr:Rfer_0094 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 4388671..4389075 Acidovorax sp. JS42 4673595 YP_988286.1 CDS Ajs_4108 NC_008782.1 4389216 4389641 D KEGG: pol:Bpro_4860 hypothetical protein; hypothetical protein 4389216..4389641 Acidovorax sp. JS42 4673538 YP_988287.1 CDS ksgA NC_008782.1 4389936 4390697 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(4389936..4390697) Acidovorax sp. JS42 4673527 YP_988288.1 CDS Ajs_4111 NC_008782.1 4390694 4392109 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(4390694..4392109) Acidovorax sp. JS42 4673476 YP_988289.1 CDS Ajs_4112 NC_008782.1 4392155 4394506 R PFAM: Organic solvent tolerance protein; KEGG: rfr:Rfer_0098 organic solvent tolerance protein; organic solvent tolerance protein complement(4392155..4394506) Acidovorax sp. JS42 4673426 YP_988290.1 CDS Ajs_4113 NC_008782.1 4394695 4395858 D PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_0099 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4394695..4395858 Acidovorax sp. JS42 4673420 YP_988291.1 CDS Ajs_4114 NC_008782.1 4395926 4396654 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 4395926..4396654 Acidovorax sp. JS42 4673413 YP_988292.1 CDS Ajs_4115 NC_008782.1 4396654 4398081 D hypothetical protein 4396654..4398081 Acidovorax sp. JS42 4673400 YP_988293.1 CDS Ajs_4116 NC_008782.1 4398074 4398796 D KEGG: cvi:CV0860 hypothetical protein; hypothetical protein 4398074..4398796 Acidovorax sp. JS42 4673381 YP_988294.1 CDS Ajs_4117 NC_008782.1 4398802 4401636 D PFAM: SMC domain protein; KEGG: bpm:BURPS1710b_2543 hypothetical protein; SMC domain-containing protein 4398802..4401636 Acidovorax sp. JS42 4673224 YP_988295.1 CDS Ajs_4118 NC_008782.1 4401633 4402382 D KEGG: bpm:BURPS1710b_2542 hypothetical protein; hypothetical protein 4401633..4402382 Acidovorax sp. JS42 4673334 YP_988296.1 CDS Ajs_4119 NC_008782.1 4402586 4403734 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein; diguanylate cyclase 4402586..4403734 Acidovorax sp. JS42 4672972 YP_988297.1 CDS Ajs_4120 NC_008782.1 4403802 4404677 R PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0402 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(4403802..4404677) Acidovorax sp. JS42 4672947 YP_988298.1 CDS Ajs_4121 NC_008782.1 4404692 4406155 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rfr:Rfer_0403 peptidase M20; peptidase M20 complement(4404692..4406155) Acidovorax sp. JS42 4672721 YP_988299.1 CDS Ajs_4122 NC_008782.1 4406506 4407693 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bpe:BP1441 probable membrane protein; diguanylate cyclase complement(4406506..4407693) Acidovorax sp. JS42 4672910 YP_988300.1 CDS Ajs_4123 NC_008782.1 4407774 4409798 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein; methyl-accepting chemotaxis sensory transducer complement(4407774..4409798) Acidovorax sp. JS42 4672904 YP_988301.1 CDS Ajs_4124 NC_008782.1 4410053 4410637 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW; methionine biosynthesis protein MetW complement(4410053..4410637) Acidovorax sp. JS42 4672892 YP_988302.1 CDS metX NC_008782.1 4410634 4411773 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(4410634..4411773) Acidovorax sp. JS42 4672822 YP_988303.1 CDS Ajs_4126 NC_008782.1 4411910 4412488 R PFAM: protein of unknown function UPF0016; KEGG: rfr:Rfer_0520 protein of unknown function UPF0016; hypothetical protein complement(4411910..4412488) Acidovorax sp. JS42 4672819 YP_988304.1 CDS Ajs_4127 NC_008782.1 4412966 4413331 D PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1; RNP-1 like RNA-binding protein 4412966..4413331 Acidovorax sp. JS42 4672669 YP_988305.1 CDS Ajs_4128 NC_008782.1 4413574 4414023 D PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 4413574..4414023 Acidovorax sp. JS42 4672663 YP_988306.1 CDS Ajs_4129 NC_008782.1 4414097 4414909 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4895 short-chain dehydrogenase/reductase SDR; short chain dehydrogenase complement(4414097..4414909) Acidovorax sp. JS42 4672804 YP_988307.1 CDS Ajs_4130 NC_008782.1 4414915 4415535 R PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239; hypothetical protein complement(4414915..4415535) Acidovorax sp. JS42 4672797 YP_988308.1 CDS Ajs_4131 NC_008782.1 4415532 4416110 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(4415532..4416110) Acidovorax sp. JS42 4672790 YP_988309.1 CDS Ajs_4132 NC_008782.1 4416110 4417111 R KEGG: rfr:Rfer_4237 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(4416110..4417111) Acidovorax sp. JS42 4672784 YP_988310.1 CDS Ajs_4133 NC_008782.1 4417160 4419145 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein; potassium efflux system protein 4417160..4419145 Acidovorax sp. JS42 4672776 YP_988311.1 CDS Ajs_4134 NC_008782.1 4419216 4419770 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 4419216..4419770 Acidovorax sp. JS42 4672762 YP_988312.1 CDS Ajs_4135 NC_008782.1 4419847 4420926 D PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase; integrase catalytic subunit 4419847..4420926 Acidovorax sp. JS42 4672363 YP_988313.1 CDS Ajs_4136 NC_008782.1 4421256 4422095 R KEGG: rfr:Rfer_4240 hypothetical protein; hypothetical protein complement(4421256..4422095) Acidovorax sp. JS42 4672023 YP_988314.1 CDS Ajs_4137 NC_008782.1 4422232 4422765 R PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein complement(4422232..4422765) Acidovorax sp. JS42 4672312 YP_988315.1 CDS trmE NC_008782.1 4422811 4424271 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(4422811..4424271) Acidovorax sp. JS42 4672215 YP_988316.1 CDS Ajs_4139 NC_008782.1 4424429 4426015 R PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic); extracellular solute-binding protein complement(4424429..4426015) Acidovorax sp. JS42 4672212 YP_988317.1 CDS Ajs_4140 NC_008782.1 4426146 4427858 R PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein; protein translocase subunit yidC complement(4426146..4427858) Acidovorax sp. JS42 4672207 YP_988318.1 CDS Ajs_4141 NC_008782.1 4427855 4428151 R PFAM: protein of unknown function DUF37; KEGG: rfr:Rfer_4243 protein of unknown function DUF37; hypothetical protein complement(4427855..4428151) Acidovorax sp. JS42 4672125 YP_988319.1 CDS Ajs_4142 NC_008782.1 4428148 4428621 R KEGG: rfr:Rfer_4244 hypothetical protein; hypothetical protein complement(4428148..4428621) Acidovorax sp. JS42 4672123 YP_988320.1 CDS rpmH NC_008782.1 4428692 4428826 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(4428692..4428826) Acidovorax sp. JS42 4671969 YP_988321.1 CDS dnaA NC_008782.1 4429148 4430569 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 4429148..4430569 Acidovorax sp. JS42 4672095 YP_988322.1 CDS Ajs_4145 NC_008782.1 4430714 4431820 D KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 4430714..4431820 Acidovorax sp. JS42 4672079 YP_988323.1 CDS Ajs_4146 NC_008782.1 4431938 4434544 D KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 4431938..4434544 Acidovorax sp. JS42 4672071 YP_988324.1 CDS Ajs_4147 NC_008782.1 4434698 4435003 R KEGG: atc:AGR_C_3308 hypothetical protein; hypothetical protein complement(4434698..4435003) Acidovorax sp. JS42 4671690 YP_988325.1 CDS Ajs_4148 NC_008782.1 4435101 4435622 D PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2453 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 4435101..4435622 Acidovorax sp. JS42 4671664 YP_988326.1 CDS Ajs_4149 NC_008782.1 4435619 4436032 D PFAM: protein of unknown function UPF0153; KEGG: cvi:CV0280 hypothetical protein; hypothetical protein 4435619..4436032 Acidovorax sp. JS42 4671663 YP_988327.1 CDS Ajs_4150 NC_008782.1 4436139 4436576 D PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein; OsmC family protein 4436139..4436576 Acidovorax sp. JS42 4671424 YP_988328.1 CDS Ajs_4151 NC_008782.1 4436573 4437352 D PFAM: protein of unknown function DUF72; KEGG: pol:Bpro_4869 protein of unknown function DUF72; hypothetical protein 4436573..4437352 Acidovorax sp. JS42 4671416 YP_988329.1 CDS Ajs_4152 NC_008782.1 4437439 4437732 R PFAM: acylphosphatase; KEGG: tbd:Tbd_0859 putative acylphosphatase; acylphosphatase complement(4437439..4437732) Acidovorax sp. JS42 4671413 YP_988330.1 CDS Ajs_4153 NC_008782.1 4437773 4438006 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_4119 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4437773..4438006 Acidovorax sp. JS42 4671409 YP_988331.1 CDS Ajs_4154 NC_008782.1 4438068 4439663 D PFAM: gamma-glutamyltranspeptidase; KEGG: bbr:BB1598 putative glutamyltransferase; gamma-glutamyltransferase 2 4438068..4439663 Acidovorax sp. JS42 4671558 YP_988332.1 CDS Ajs_4155 NC_008782.1 4440017 4441432 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 4440017..4441432 Acidovorax sp. JS42 4671557 YP_988333.1 CDS Ajs_4156 NC_008782.1 4441485 4441793 R KEGG: pol:Bpro_0143 hypothetical protein; hypothetical protein complement(4441485..4441793) Acidovorax sp. JS42 4671540 YP_988334.1 CDS Ajs_4157 NC_008782.1 4442036 4443037 D KEGG: pol:Bpro_3166 hypothetical protein; hypothetical protein 4442036..4443037 Acidovorax sp. JS42 4671529 YP_988335.1 CDS dinG NC_008782.1 4443051 4445327 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 4443051..4445327 Acidovorax sp. JS42 4670969 YP_988336.1 CDS Ajs_4159 NC_008782.1 4445512 4445709 D KEGG: rfr:Rfer_0182 hypothetical protein; hypothetical protein 4445512..4445709 Acidovorax sp. JS42 4670965 YP_988337.1 CDS Ajs_4160 NC_008782.1 4445857 4446513 D KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4445857..4446513 Acidovorax sp. JS42 4670957 YP_988338.1 CDS Ajs_4161 NC_008782.1 4446722 4447228 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mxa:MXAN_0453 putative general stress protein 26; pyridoxamine 5'-phosphate oxidase-like protein 4446722..4447228 Acidovorax sp. JS42 4670920 YP_988339.1 CDS Ajs_4162 NC_008782.1 4447522 4448850 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: sco:SCO1360 GntR-family transcriptional regulator; GntR family transcriptional regulator complement(4447522..4448850) Acidovorax sp. JS42 4670534 Ajs_R0001 tRNA Ajs_R0001 NC_008782.1 333762 333837 D tRNA-Arg 333762..333837 Acidovorax sp. JS42 4673678 Ajs_R0002 tRNA Ajs_R0002 NC_008782.1 414117 414193 D tRNA-Met 414117..414193 Acidovorax sp. JS42 4670844 Ajs_R0003 tRNA Ajs_R0003 NC_008782.1 836662 836737 D tRNA-Thr 836662..836737 Acidovorax sp. JS42 4671877 Ajs_R0004 tRNA Ajs_R0004 NC_008782.1 887009 887085 R tRNA-Pro complement(887009..887085) Acidovorax sp. JS42 4673563 Ajs_R0005 tRNA Ajs_R0005 NC_008782.1 944869 944945 R tRNA-Gln complement(944869..944945) Acidovorax sp. JS42 4671077 Ajs_R0006 tRNA Ajs_R0006 NC_008782.1 992918 992994 R tRNA-Arg complement(992918..992994) Acidovorax sp. JS42 4672823 Ajs_R0007 tRNA Ajs_R0007 NC_008782.1 998729 998813 D tRNA-Leu 998729..998813 Acidovorax sp. JS42 4673046 Ajs_R0008 tRNA Ajs_R0008 NC_008782.1 1158744 1158831 R tRNA-Ser complement(1158744..1158831) Acidovorax sp. JS42 4671313 Ajs_R0010 tRNA Ajs_R0010 NC_008782.1 1250181 1250257 D tRNA-Ile 1250181..1250257 Acidovorax sp. JS42 4672477 Ajs_R0011 tRNA Ajs_R0011 NC_008782.1 1250292 1250367 D tRNA-Ala 1250292..1250367 Acidovorax sp. JS42 4674473 Ajs_R0014 tRNA Ajs_R0014 NC_008782.1 1281620 1281706 D tRNA-Leu 1281620..1281706 Acidovorax sp. JS42 4672852 Ajs_R0015 tRNA Ajs_R0015 NC_008782.1 1287848 1287923 D tRNA-Gly 1287848..1287923 Acidovorax sp. JS42 4673010 Ajs_R0016 tRNA Ajs_R0016 NC_008782.1 1408450 1408523 D tRNA-Cys 1408450..1408523 Acidovorax sp. JS42 4674629 Ajs_R0017 tRNA Ajs_R0017 NC_008782.1 1408638 1408713 D tRNA-Gly 1408638..1408713 Acidovorax sp. JS42 4674610 Ajs_R0018 tRNA Ajs_R0018 NC_008782.1 1659919 1659994 D tRNA-Ala 1659919..1659994 Acidovorax sp. JS42 4673352 Ajs_R0019 tRNA Ajs_R0019 NC_008782.1 1660026 1660101 D tRNA-Glu 1660026..1660101 Acidovorax sp. JS42 4673388 Ajs_R0020 tRNA Ajs_R0020 NC_008782.1 1660159 1660235 D tRNA-Asp 1660159..1660235 Acidovorax sp. JS42 4673442 Ajs_R0021 tRNA Ajs_R0021 NC_008782.1 1684418 1684510 D tRNA-Ser 1684418..1684510 Acidovorax sp. JS42 4673786 Ajs_R0022 tRNA Ajs_R0022 NC_008782.1 1735478 1735554 D tRNA-Pro 1735478..1735554 Acidovorax sp. JS42 4671827 Ajs_R0023 tRNA Ajs_R0023 NC_008782.1 1795778 1795853 D tRNA-Lys 1795778..1795853 Acidovorax sp. JS42 4672005 Ajs_R0024 tRNA Ajs_R0024 NC_008782.1 1870836 1870925 D tRNA-Ser 1870836..1870925 Acidovorax sp. JS42 4673417 Ajs_R0025 tRNA Ajs_R0025 NC_008782.1 2077471 2077544 R tRNA-Gly complement(2077471..2077544) Acidovorax sp. JS42 4674078 Ajs_R0026 tRNA Ajs_R0026 NC_008782.1 2261208 2261282 R tRNA-Val complement(2261208..2261282) Acidovorax sp. JS42 4670843 Ajs_R0027 tRNA Ajs_R0027 NC_008782.1 2261322 2261396 R tRNA-Val complement(2261322..2261396) Acidovorax sp. JS42 4670907 Ajs_R0028 tRNA Ajs_R0028 NC_008782.1 2435001 2435076 D tRNA-Asn 2435001..2435076 Acidovorax sp. JS42 4672365 Ajs_R0029 tRNA Ajs_R0029 NC_008782.1 2435129 2435204 D tRNA-Asn 2435129..2435204 Acidovorax sp. JS42 4672408 Ajs_R0031 tRNA Ajs_R0031 NC_008782.1 2545780 2545856 R tRNA-Pro complement(2545780..2545856) Acidovorax sp. JS42 4672347 Ajs_R0033 tRNA Ajs_R0033 NC_008782.1 2734229 2734313 D tRNA-Leu 2734229..2734313 Acidovorax sp. JS42 4670927 Ajs_R0034 tRNA Ajs_R0034 NC_008782.1 2734494 2734578 D tRNA-Leu 2734494..2734578 Acidovorax sp. JS42 4671004 Ajs_R0035 tRNA Ajs_R0035 NC_008782.1 2779715 2779791 D tRNA-Arg 2779715..2779791 Acidovorax sp. JS42 4674143 Ajs_R0036 tRNA Ajs_R0036 NC_008782.1 2791155 2791230 R tRNA-His complement(2791155..2791230) Acidovorax sp. JS42 4674723 Ajs_R0037 tRNA Ajs_R0037 NC_008782.1 2793262 2793337 R tRNA-Val complement(2793262..2793337) Acidovorax sp. JS42 4674704 Ajs_R0038 tRNA Ajs_R0038 NC_008782.1 2895213 2895289 R tRNA-Asp complement(2895213..2895289) Acidovorax sp. JS42 4672890 Ajs_R0039 tRNA Ajs_R0039 NC_008782.1 2895336 2895411 R tRNA-Glu complement(2895336..2895411) Acidovorax sp. JS42 4672891 Ajs_R0040 tRNA Ajs_R0040 NC_008782.1 2895444 2895519 R tRNA-Ala complement(2895444..2895519) Acidovorax sp. JS42 4673001 Ajs_R0041 tRNA Ajs_R0041 NC_008782.1 2923874 2923949 D tRNA-Thr 2923874..2923949 Acidovorax sp. JS42 4674095 Ajs_R0042 tRNA Ajs_R0042 NC_008782.1 3328249 3328325 R tRNA-Val complement(3328249..3328325) Acidovorax sp. JS42 4674260 Ajs_R0043 tRNA Ajs_R0043 NC_008782.1 3523853 3523928 D tRNA-Lys 3523853..3523928 Acidovorax sp. JS42 4670906 Ajs_R0044 tRNA Ajs_R0044 NC_008782.1 3633028 3633117 R tRNA-Ser complement(3633028..3633117) Acidovorax sp. JS42 4674410 Ajs_R0045 tRNA Ajs_R0045 NC_008782.1 3754391 3754465 D tRNA-Arg 3754391..3754465 Acidovorax sp. JS42 4671828 Ajs_R0046 tRNA Ajs_R0046 NC_008782.1 3828784 3828860 D tRNA-Met 3828784..3828860 Acidovorax sp. JS42 4674020 Ajs_R0050 tRNA Ajs_R0050 NC_008782.1 4019215 4019290 R tRNA-Ala complement(4019215..4019290) Acidovorax sp. JS42 4671607 Ajs_R0051 tRNA Ajs_R0051 NC_008782.1 4019325 4019401 R tRNA-Ile complement(4019325..4019401) Acidovorax sp. JS42 4671587 Ajs_R0053 tRNA Ajs_R0053 NC_008782.1 4132026 4132101 R tRNA-Phe complement(4132026..4132101) Acidovorax sp. JS42 4674048 Ajs_R0054 tRNA Ajs_R0054 NC_008782.1 4150130 4150205 R tRNA-Trp complement(4150130..4150205) Acidovorax sp. JS42 4671983 Ajs_R0055 tRNA Ajs_R0055 NC_008782.1 4151487 4151561 R tRNA-Thr complement(4151487..4151561) Acidovorax sp. JS42 4671959 Ajs_R0056 tRNA Ajs_R0056 NC_008782.1 4151603 4151676 R tRNA-Gly complement(4151603..4151676) Acidovorax sp. JS42 4671962 Ajs_R0057 tRNA Ajs_R0057 NC_008782.1 4151725 4151810 R tRNA-Tyr complement(4151725..4151810) Acidovorax sp. JS42 4671475 Ajs_R0060 tRNA Ajs_R0060 NC_008782.1 4156943 4157018 R tRNA-Ala complement(4156943..4157018) Acidovorax sp. JS42 4671400 Ajs_R0061 tRNA Ajs_R0061 NC_008782.1 4157053 4157129 R tRNA-Ile complement(4157053..4157129) Acidovorax sp. JS42 4670513 Ajs_R0064 tRNA Ajs_R0064 NC_008782.1 4301742 4301818 R tRNA-Arg complement(4301742..4301818) Acidovorax sp. JS42 4672464 Ajs_R0009 rRNA Ajs_R0009 NC_008782.1 1248578 1250099 D 16S ribosomal RNA 1248578..1250099 Acidovorax sp. JS42 4672461 Ajs_R0012 rRNA Ajs_R0012 NC_008782.1 1250707 1253585 D 23S ribosomal RNA 1250707..1253585 Acidovorax sp. JS42 4672536 Ajs_R0013 rRNA Ajs_R0013 NC_008782.1 1253703 1253815 D 5S ribosomal RNA 1253703..1253815 Acidovorax sp. JS42 4673192 Ajs_R0048 rRNA Ajs_R0048 NC_008782.1 4015747 4015879 R 5S ribosomal RNA complement(4015747..4015879) Acidovorax sp. JS42 4671640 Ajs_R0049 rRNA Ajs_R0049 NC_008782.1 4015997 4018875 R 23S ribosomal RNA complement(4015997..4018875) Acidovorax sp. JS42 4671630 Ajs_R0052 rRNA Ajs_R0052 NC_008782.1 4019483 4021004 R 16S ribosomal RNA complement(4019483..4021004) Acidovorax sp. JS42 4671569 Ajs_R0058 rRNA Ajs_R0058 NC_008782.1 4153495 4153607 R 5S ribosomal RNA complement(4153495..4153607) Acidovorax sp. JS42 4671378 Ajs_R0059 rRNA Ajs_R0059 NC_008782.1 4153725 4156603 R 23S ribosomal RNA complement(4153725..4156603) Acidovorax sp. JS42 4671387 Ajs_R0062 rRNA Ajs_R0062 NC_008782.1 4157211 4158732 R 16S ribosomal RNA complement(4157211..4158732) Acidovorax sp. JS42 4670581