-- dump date   	20120504_132538
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
596154000001	SEQ_END	SEQ_END	NC_015422.1	4995263	4995263	DR	NC_015422.1; contig end	4995263..4995263	Alicycliphilus denitrificans K601	<NULL_VALUE>
596154000002	SEQ_END	SEQ_END	NC_015423.1	75488	75488	DR	NC_015423.1; contig end	75488..75488	Alicycliphilus denitrificans K601	<NULL_VALUE>
YP_004385957.1	CDS	Alide2_0001	NC_015422.1	104	1525	D	SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: dia:Dtpsy_0001 chromosomal replication initiation protein; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; chromosomal replication initiator protein dnaA	104..1525	Alicycliphilus denitrificans K601	10485827
YP_004385958.1	CDS	Alide2_0002	NC_015422.1	1652	2758	D	SMART: DNA polymerase III, beta chain; TIGRFAM: DNA polymerase III, beta chain; KEGG: dia:Dtpsy_0002 DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain, C-terminal; DNA polymerase III, beta chain, N-terminal; DNA polymerase III, beta chain, central; DNA polymerase III subunit beta	1652..2758	Alicycliphilus denitrificans K601	10481018
YP_004385959.1	CDS	Alide2_0003	NC_015422.1	2877	5459	D	TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; DNA gyrase subunit B	2877..5459	Alicycliphilus denitrificans K601	10481019
YP_004385960.1	CDS	Alide2_0004	NC_015422.1	5524	6156	D	hypothetical protein	5524..6156	Alicycliphilus denitrificans K601	10481020
YP_004385961.1	CDS	Alide2_0005	NC_015422.1	6147	7277	R	manually curated; PFAM: Helix-turn-helix type 3; KEGG: sbl:Sbal_4355 XRE family transcriptional regulator; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(6147..7277)	Alicycliphilus denitrificans K601	10481021
YP_004385962.1	CDS	Alide2_0006	NC_015422.1	7771	8685	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(7771..8685)	Alicycliphilus denitrificans K601	10481022
YP_004385963.1	CDS	Alide2_0007	NC_015422.1	8682	9005	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(8682..9005)	Alicycliphilus denitrificans K601	10481023
YP_004385964.1	CDS	Alide2_0008	NC_015422.1	9272	9736	R	KEGG: cyp:PCC8801_1290 hypothetical protein; hypothetical protein	complement(9272..9736)	Alicycliphilus denitrificans K601	10481024
YP_004385965.1	CDS	Alide2_0009	NC_015422.1	10466	10879	D	PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0006 protein of unknown function UPF0153; hypothetical protein	10466..10879	Alicycliphilus denitrificans K601	10481025
YP_004385966.1	CDS	Alide2_0010	NC_015422.1	10904	12097	R	KEGG: reh:H16_A2137 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(10904..12097)	Alicycliphilus denitrificans K601	10481026
YP_004385967.1	CDS	Alide2_0011	NC_015422.1	12107	12964	R	PFAM: Crotonase, core; KEGG: reh:H16_A2138 enoyl-CoA hydratase/carnithine racemase; enoyl-CoA hydratase/isomerase	complement(12107..12964)	Alicycliphilus denitrificans K601	10481027
YP_004385968.1	CDS	Alide2_0012	NC_015422.1	13018	13860	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reh:H16_A2139 LysR family transcriptional regulator; LysR family transcriptional regulator	13018..13860	Alicycliphilus denitrificans K601	10481028
YP_004385969.1	CDS	Alide2_0013	NC_015422.1	13857	14879	R	KEGG: reh:H16_A2140 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(13857..14879)	Alicycliphilus denitrificans K601	10481029
YP_004385970.1	CDS	Alide2_0014	NC_015422.1	14914	16686	R	PFAM: Protein of unknown function DUF1446; KEGG: reh:H16_A2141 hypothetical protein; hypothetical protein	complement(14914..16686)	Alicycliphilus denitrificans K601	10481030
YP_004385971.1	CDS	Alide2_0015	NC_015422.1	16683	18701	R	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: xtr:100489724 acetyl-/propionyl-coenzyme A carboxylase alpha chain-like; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase	complement(16683..18701)	Alicycliphilus denitrificans K601	10481031
YP_004385972.1	CDS	Alide2_0016	NC_015422.1	18718	19881	R	KEGG: reh:H16_A2143 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	complement(18718..19881)	Alicycliphilus denitrificans K601	10481032
YP_004385973.1	CDS	Alide2_0017	NC_015422.1	20013	21623	R	KEGG: reh:H16_A2144 propionyl-CoA carboxylase beta chain; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase	complement(20013..21623)	Alicycliphilus denitrificans K601	10481033
YP_004385974.1	CDS	Alide2_0018	NC_015422.1	21735	22040	R	PFAM: Acylphosphatase-like; KEGG: ajs:Ajs_4152 acylphosphatase; acylphosphatase	complement(21735..22040)	Alicycliphilus denitrificans K601	10481034
YP_004385975.1	CDS	Alide2_0019	NC_015422.1	22068	22352	D	PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_4153 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	22068..22352	Alicycliphilus denitrificans K601	10481035
YP_004385976.1	CDS	Alide2_0020	NC_015422.1	22670	24055	D	PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; KEGG: ajs:Ajs_4155 homoserine dehydrogenase; homoserine dehydrogenase	22670..24055	Alicycliphilus denitrificans K601	10481036
YP_004385977.1	CDS	Alide2_0021	NC_015422.1	24215	26389	D	KEGG: ajs:Ajs_4158 ATP-dependent DNA helicase DinG; PFAM: DEAD2; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; DEAD_2 domain-containing protein	24215..26389	Alicycliphilus denitrificans K601	10481037
YP_004385978.1	CDS	Alide2_0022	NC_015422.1	26402	27031	D	PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: ajs:Ajs_4160 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA-directed DNA polymerase	26402..27031	Alicycliphilus denitrificans K601	10481038
YP_004385979.1	CDS	Alide2_0023	NC_015422.1	27098	27577	D	PFAM: NLP/P60; KEGG: ajs:Ajs_0001 NLP/P60 protein; NLP/P60 protein	27098..27577	Alicycliphilus denitrificans K601	10481039
YP_004385980.1	CDS	Alide2_0024	NC_015422.1	27616	28719	D	TIGRFAM: DHAP synthase, class 1; KEGG: ajs:Ajs_0002 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase	27616..28719	Alicycliphilus denitrificans K601	10481040
YP_004385981.1	CDS	Alide2_0025	NC_015422.1	29312	32932	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; PAS fold; Diguanylate cyclase, predicted; GAF; KEGG: dia:Dtpsy_0021 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	29312..32932	Alicycliphilus denitrificans K601	10481041
YP_004385982.1	CDS	Alide2_0026	NC_015422.1	32999	33802	R	KEGG: dia:Dtpsy_0022 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(32999..33802)	Alicycliphilus denitrificans K601	10481042
YP_004385983.1	CDS	Alide2_0027	NC_015422.1	33989	34960	D	KEGG: ajs:Ajs_0005 hypothetical protein; hypothetical protein	33989..34960	Alicycliphilus denitrificans K601	10481043
YP_004385984.1	CDS	Alide2_0028	NC_015422.1	34971	35999	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04409 acyl-CoA dehydrogenase, C-terminal domain-containing protein 1; acyl-CoA dehydrogenase domain-containing protein	complement(34971..35999)	Alicycliphilus denitrificans K601	10481044
YP_004385985.1	CDS	Alide2_0029	NC_015422.1	36004	37191	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: axy:AXYL_04410 acyl-CoA dehydrogenase, middle domain-containing protein 12; acyl-CoA dehydrogenase domain-containing protein	complement(36004..37191)	Alicycliphilus denitrificans K601	10481045
YP_004385986.1	CDS	Alide2_0030	NC_015422.1	37238	38203	R	KEGG: axy:AXYL_04411 extra-cytoplasmic solute receptor family protein 110; extra-cytoplasmic solute receptor family protein	complement(37238..38203)	Alicycliphilus denitrificans K601	10481046
YP_004385987.1	CDS	Alide2_0031	NC_015422.1	38241	40334	R	KEGG: rme:Rmet_0842 CoA-binding; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding; CoA-binding domain-containing protein	complement(38241..40334)	Alicycliphilus denitrificans K601	10481047
YP_004385988.1	CDS	Alide2_0032	NC_015422.1	40349	41149	R	PFAM: Crotonase, core; KEGG: rme:Rmet_0841 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(40349..41149)	Alicycliphilus denitrificans K601	10481048
YP_004385989.1	CDS	Alide2_0033	NC_015422.1	41244	42008	D	KEGG: bpt:Bpet3285 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	41244..42008	Alicycliphilus denitrificans K601	10481049
YP_004385990.1	CDS	Alide2_0034	NC_015422.1	42268	42873	R	PFAM: Lipid A 3-O-deacylase-related; KEGG: dia:Dtpsy_0024 hypothetical protein; lipid A 3-O-deacylase-like protein	complement(42268..42873)	Alicycliphilus denitrificans K601	10481050
YP_004385991.1	CDS	Alide2_0035	NC_015422.1	42988	43581	R	PFAM: Domain of unknown function DUF1520; KEGG: ajs:Ajs_0007 hypothetical protein; hypothetical protein	complement(42988..43581)	Alicycliphilus denitrificans K601	10481051
YP_004385992.1	CDS	Alide2_0036	NC_015422.1	43798	44739	D	PFAM: Putative exonuclease, RdgC; KEGG: ajs:Ajs_0008 recombination associated protein; exonuclease RdgC	43798..44739	Alicycliphilus denitrificans K601	10481052
YP_004385993.1	CDS	Alide2_0037	NC_015422.1	44759	46012	D	PFAM: Nucleoside recognition; KEGG: ajs:Ajs_0012 nucleoside recognition domain-containing protein; nucleoside recognition domain-containing protein	44759..46012	Alicycliphilus denitrificans K601	10481053
YP_004385994.1	CDS	Alide2_0038	NC_015422.1	46499	46750	D	KEGG: dia:Dtpsy_0031 hypothetical protein; hypothetical protein	46499..46750	Alicycliphilus denitrificans K601	10481054
YP_004385995.1	CDS	Alide2_0039	NC_015422.1	46719	48596	R	KEGG: blt:Balat_0053 beta-galactosidase I; hypothetical protein	complement(46719..48596)	Alicycliphilus denitrificans K601	10481055
YP_004385996.1	CDS	Alide2_0040	NC_015422.1	48694	49131	R	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: dia:Dtpsy_0035 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	complement(48694..49131)	Alicycliphilus denitrificans K601	10481056
YP_004385997.1	CDS	Alide2_0041	NC_015422.1	49128	49325	R	PFAM: Heavy metal transport/detoxification protein; KEGG: dia:Dtpsy_0036 heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein	complement(49128..49325)	Alicycliphilus denitrificans K601	10481057
YP_004385998.1	CDS	Alide2_0042	NC_015422.1	49495	51726	D	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0037 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	49495..51726	Alicycliphilus denitrificans K601	10481058
YP_004385999.1	CDS	Alide2_0043	NC_015422.1	51853	53502	D	KEGG: ajs:Ajs_0020 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	51853..53502	Alicycliphilus denitrificans K601	10481059
YP_004386000.1	CDS	Alide2_0044	NC_015422.1	53658	56753	R	KEGG: aav:Aave_0038 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	complement(53658..56753)	Alicycliphilus denitrificans K601	10481060
YP_004386001.1	CDS	Alide2_0045	NC_015422.1	56750	57991	R	TIGRFAM: Secretion protein HlyD; KEGG: aav:Aave_0039 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit	complement(56750..57991)	Alicycliphilus denitrificans K601	10481061
YP_004386002.1	CDS	Alide2_0046	NC_015422.1	58023	59264	R	PFAM: Outer membrane efflux protein; KEGG: xtr:100485479 hypothetical protein LOC100485479; outer membrane efflux protein	complement(58023..59264)	Alicycliphilus denitrificans K601	10481062
YP_004386003.1	CDS	Alide2_0047	NC_015422.1	59397	60122	D	KEGG: aav:Aave_0041 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	59397..60122	Alicycliphilus denitrificans K601	10481063
YP_004386004.1	CDS	Alide2_0048	NC_015422.1	60119	61546	D	KEGG: aav:Aave_0042 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	60119..61546	Alicycliphilus denitrificans K601	10481064
YP_004386005.1	CDS	Alide2_0049	NC_015422.1	61572	62687	R	KEGG: dia:Dtpsy_0040 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; 12-oxophytodienoate reductase	complement(61572..62687)	Alicycliphilus denitrificans K601	10481065
YP_004386006.1	CDS	Alide2_0050	NC_015422.1	62750	63358	R	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_0042 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein	complement(62750..63358)	Alicycliphilus denitrificans K601	10481066
YP_004386007.1	CDS	Alide2_0051	NC_015422.1	63391	63687	R	PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_0043 protein of unknown function UPF0153; hypothetical protein	complement(63391..63687)	Alicycliphilus denitrificans K601	10481067
YP_004386008.1	CDS	Alide2_0052	NC_015422.1	63694	64272	R	PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_0044 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase	complement(63694..64272)	Alicycliphilus denitrificans K601	10481068
YP_004386009.1	CDS	Alide2_0053	NC_015422.1	64350	66383	D	KEGG: dia:Dtpsy_0045 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: Glucose-inhibited division protein A; PFAM: Glucose-inhibited division protein A-related; glucose inhibited division protein A	64350..66383	Alicycliphilus denitrificans K601	10481069
YP_004386010.1	CDS	Alide2_0054	NC_015422.1	66367	66606	D	KEGG: pct:PC1_0787 hypothetical protein; hypothetical protein	66367..66606	Alicycliphilus denitrificans K601	10481070
YP_004386011.1	CDS	Alide2_0055	NC_015422.1	66599	67246	D	KEGG: dia:Dtpsy_0046 16S rRNA methyltransferase GidB; TIGRFAM: rRNA small subunit methyltransferase G; PFAM: rRNA small subunit methyltransferase G; methyltransferase GidB	66599..67246	Alicycliphilus denitrificans K601	10481071
YP_004386012.1	CDS	Alide2_0056	NC_015422.1	67283	67897	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: dia:Dtpsy_0047 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA	67283..67897	Alicycliphilus denitrificans K601	10481072
YP_004386013.1	CDS	Alide2_0057	NC_015422.1	67906	68676	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_0048 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase	67906..68676	Alicycliphilus denitrificans K601	10481073
YP_004386014.1	CDS	Alide2_0058	NC_015422.1	68761	69303	D	PFAM: Protein of unknown function DUF1234; KEGG: ajs:Ajs_0030 hypothetical protein; hypothetical protein	68761..69303	Alicycliphilus denitrificans K601	10481074
YP_004386015.1	CDS	Alide2_0059	NC_015422.1	69309	70226	D	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: aav:Aave_0056 chromosome segregation DNA-binding protein; SMART: ParB-like nuclease; parB-like partition protein	69309..70226	Alicycliphilus denitrificans K601	10481075
YP_004386016.1	CDS	Alide2_0060	NC_015422.1	70251	71030	D	KEGG: ajs:Ajs_0032 methyltransferase type 12; type 12 methyltransferase	70251..71030	Alicycliphilus denitrificans K601	10481076
YP_004386017.1	CDS	Alide2_0061	NC_015422.1	71090	72130	D	PFAM: Peptidoglycan binding-like; KEGG: dia:Dtpsy_0052 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein	71090..72130	Alicycliphilus denitrificans K601	10481077
YP_004386018.1	CDS	Alide2_0062	NC_015422.1	72210	73115	R	KEGG: dia:Dtpsy_0054 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC, arabinose-binding/dimerisation; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator	complement(72210..73115)	Alicycliphilus denitrificans K601	10481078
YP_004386019.1	CDS	Alide2_0063	NC_015422.1	73175	74440	D	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0055 major facilitator superfamily MFS_1; major facilitator superfamily protein	73175..74440	Alicycliphilus denitrificans K601	10481079
YP_004386020.1	CDS	Alide2_0064	NC_015422.1	74442	75251	R	PFAM: Mechanosensitive ion channel MscS; KEGG: bpy:Bphyt_0752 MscS mechanosensitive ion channel; MscS Mechanosensitive ion channel	complement(74442..75251)	Alicycliphilus denitrificans K601	10481080
YP_004386021.1	CDS	Alide2_0065	NC_015422.1	75330	75425	D	hypothetical protein	75330..75425	Alicycliphilus denitrificans K601	10481081
YP_004386022.1	CDS	Alide2_0066	NC_015422.1	75450	76874	R	KEGG: ajs:Ajs_0040 fis family transcriptional regulator; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase (cytochrome)	complement(75450..76874)	Alicycliphilus denitrificans K601	10481082
YP_004386023.1	CDS	Alide2_0067	NC_015422.1	76968	77204	R	KEGG: dia:Dtpsy_0062 calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein	complement(76968..77204)	Alicycliphilus denitrificans K601	10481083
YP_004386024.1	CDS	Alide2_0068	NC_015422.1	77362	77937	D	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; KEGG: dia:Dtpsy_0063 ATP/cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; ATP/cobalamin adenosyltransferase	77362..77937	Alicycliphilus denitrificans K601	10481084
YP_004386025.1	CDS	Alide2_0069	NC_015422.1	77998	78420	R	KEGG: ajs:Ajs_0044 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	complement(77998..78420)	Alicycliphilus denitrificans K601	10481085
YP_004386026.1	CDS	Alide2_0070	NC_015422.1	78503	79969	R	TIGRFAM: Succinate CoA transferase; KEGG: ajs:Ajs_0046 acetyl-CoA hydrolase; PFAM: Acetyl-CoA hydrolase/transferase; succinate CoA transferase	complement(78503..79969)	Alicycliphilus denitrificans K601	10481086
YP_004386027.1	CDS	Alide2_0071	NC_015422.1	80181	80903	D	KEGG: dia:Dtpsy_0067 hypothetical protein; hypothetical protein	80181..80903	Alicycliphilus denitrificans K601	10481087
YP_004386028.1	CDS	Alide2_0072	NC_015422.1	80958	81872	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_5369 putative LysR family transcriptional regulator; LysR family transcriptional regulator	80958..81872	Alicycliphilus denitrificans K601	10481088
YP_004386029.1	CDS	Alide2_0073	NC_015422.1	81997	83007	D	KEGG: reu:Reut_B4598 hypothetical protein; hypothetical protein	81997..83007	Alicycliphilus denitrificans K601	10481089
YP_004386030.1	CDS	Alide2_0074	NC_015422.1	83056	83862	D	KEGG: bbr:BB2766 putative short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	83056..83862	Alicycliphilus denitrificans K601	10481090
YP_004386031.1	CDS	Alide2_0075	NC_015422.1	83864	84625	D	KEGG: vap:Vapar_0736 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	83864..84625	Alicycliphilus denitrificans K601	10481091
YP_004386032.1	CDS	Alide2_0076	NC_015422.1	84657	85172	D	PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_01971 carboxymuconolactone decarboxylase family protein 2; carboxymuconolactone decarboxylase	84657..85172	Alicycliphilus denitrificans K601	10481092
YP_004386033.1	CDS	Alide2_0077	NC_015422.1	85179	86465	R	KEGG: ajs:Ajs_0048 uracil-xanthine permease; TIGRFAM: Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease	complement(85179..86465)	Alicycliphilus denitrificans K601	10481093
YP_004386034.1	CDS	Alide2_0078	NC_015422.1	86617	87327	D	TIGRFAM: Methyltransferase FkbM; KEGG: sna:Snas_6312 methyltransferase FkbM family; methyltransferase FkbM family	86617..87327	Alicycliphilus denitrificans K601	10481094
YP_004386035.1	CDS	Alide2_0079	NC_015422.1	87454	88722	R	KEGG: ajs:Ajs_0052 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; Ubiquinone biosynthesis hydroxylase	complement(87454..88722)	Alicycliphilus denitrificans K601	10481095
YP_004386036.1	CDS	Alide2_0080	NC_015422.1	88892	90967	D	TIGRFAM: Acetoacetyl-CoA synthase; KEGG: dia:Dtpsy_0074 acetoacetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; acetoacetyl-CoA synthase	88892..90967	Alicycliphilus denitrificans K601	10481096
YP_004386037.1	CDS	Alide2_0081	NC_015422.1	90999	91928	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0055 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(90999..91928)	Alicycliphilus denitrificans K601	10481097
YP_004386038.1	CDS	Alide2_0082	NC_015422.1	92044	93030	D	KEGG: ajs:Ajs_0056 hypothetical protein; hypothetical protein	92044..93030	Alicycliphilus denitrificans K601	10481098
YP_004386039.1	CDS	Alide2_0083	NC_015422.1	93056	94213	D	KEGG: ajs:Ajs_0061 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; Isovaleryl-CoA dehydrogenase	93056..94213	Alicycliphilus denitrificans K601	10481099
YP_004386040.1	CDS	Alide2_0084	NC_015422.1	94233	95258	D	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: ajs:Ajs_0062 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein	94233..95258	Alicycliphilus denitrificans K601	10481100
YP_004386041.1	CDS	Alide2_0085	NC_015422.1	95364	96152	D	PFAM: Crotonase, core; KEGG: ajs:Ajs_0063 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	95364..96152	Alicycliphilus denitrificans K601	10481101
YP_004386042.1	CDS	Alide2_0086	NC_015422.1	96182	96805	D	manually curated; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; KEGG: dia:Dtpsy_0083 CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase	96182..96805	Alicycliphilus denitrificans K601	10481102
YP_004386043.1	CDS	Alide2_0089	NC_015422.1	99251	99466	D	KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein	99251..99466	Alicycliphilus denitrificans K601	10481105
YP_004386044.1	CDS	Alide2_0090	NC_015422.1	99634	100413	D	TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: dia:Dtpsy_0084 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal; septum site-determining protein minC	99634..100413	Alicycliphilus denitrificans K601	10481106
YP_004386045.1	CDS	Alide2_0091	NC_015422.1	100468	101283	D	KEGG: dia:Dtpsy_0085 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD	100468..101283	Alicycliphilus denitrificans K601	10481107
YP_004386046.1	CDS	Alide2_0092	NC_015422.1	101290	101559	D	KEGG: dia:Dtpsy_0086 cell division topological specificity factor MinE; TIGRFAM: Septum formation topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE	101290..101559	Alicycliphilus denitrificans K601	10481108
YP_004386047.1	CDS	Alide2_0093	NC_015422.1	101570	102508	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_1015 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(101570..102508)	Alicycliphilus denitrificans K601	10481109
YP_004386048.1	CDS	Alide2_0094	NC_015422.1	102622	103599	D	KEGG: pol:Bpro_4513 hypothetical protein; hypothetical protein	102622..103599	Alicycliphilus denitrificans K601	10481110
YP_004386049.1	CDS	Alide2_0095	NC_015422.1	103627	104790	D	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal; Mandelate racemase/muconate lactonizing enzyme, C-terminal; KEGG: mes:Meso_4537 galactonate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; galactonate dehydratase	103627..104790	Alicycliphilus denitrificans K601	10481111
YP_004386050.1	CDS	Alide2_0096	NC_015422.1	104808	105347	R	manually curated; PFAM: Flavin reductase-like, FMN-binding; KEGG: ajs:Ajs_0068 flavin reductase domain-containing protein; SMART: Flavin reductase-like, FMN-binding; flavin reductase domain-containing proten	complement(104808..105347)	Alicycliphilus denitrificans K601	10481112
YP_004386051.1	CDS	Alide2_0097	NC_015422.1	105454	106230	D	PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_0088 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein	105454..106230	Alicycliphilus denitrificans K601	10481113
YP_004386052.1	CDS	Alide2_0098	NC_015422.1	106304	106969	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0073 TetR family transcriptional regulator; TetR family transcriptional regulator	106304..106969	Alicycliphilus denitrificans K601	10481114
YP_004386053.1	CDS	Alide2_0099	NC_015422.1	106917	107339	R	PFAM: UspA; KEGG: ajs:Ajs_0074 UspA domain-containing protein; UspA domain-containing protein	complement(106917..107339)	Alicycliphilus denitrificans K601	10481115
YP_004386054.1	CDS	Alide2_0100	NC_015422.1	107441	108289	R	PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_0075 metallophosphoesterase; metallophosphoesterase	complement(107441..108289)	Alicycliphilus denitrificans K601	10481116
YP_004386055.1	CDS	Alide2_0101	NC_015422.1	108316	109287	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0076 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(108316..109287)	Alicycliphilus denitrificans K601	10481117
YP_004386056.1	CDS	Alide2_0102	NC_015422.1	109413	109853	D	KEGG: ajs:Ajs_0077 hypothetical protein; hypothetical protein	109413..109853	Alicycliphilus denitrificans K601	10481118
YP_004386057.1	CDS	Alide2_0103	NC_015422.1	109993	111861	R	KEGG: dac:Daci_0114 phosphoenolpyruvate carboxykinase; PFAM: Phosphoenolpyruvate carboxykinase, GTP-utilising; phosphoenolpyruvate carboxykinase (GTP)	complement(109993..111861)	Alicycliphilus denitrificans K601	10481119
YP_004386058.1	CDS	Alide2_0104	NC_015422.1	112202	112363	R	KEGG: dia:Dtpsy_0098 hypothetical protein; hypothetical protein	complement(112202..112363)	Alicycliphilus denitrificans K601	10481120
YP_004386059.1	CDS	Alide2_0105	NC_015422.1	112453	113652	R	KEGG: dia:Dtpsy_0099 threonine dehydratase; TIGRFAM: Threonine dehydratase II; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Amino acid-binding ACT; threonine dehydratase	complement(112453..113652)	Alicycliphilus denitrificans K601	10481121
YP_004386060.1	CDS	Alide2_0106	NC_015422.1	113755	115416	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ajs:Ajs_0081 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein	complement(113755..115416)	Alicycliphilus denitrificans K601	10481122
YP_004386061.1	CDS	Alide2_0107	NC_015422.1	115472	118192	R	SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, magnesium-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: pfl:PFL_4078 magnesium-transporting ATPase MgtA; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; magnesium-translocating P-type ATPase	complement(115472..118192)	Alicycliphilus denitrificans K601	10481123
YP_004386062.1	CDS	Alide2_0108	NC_015422.1	118327	119358	R	KEGG: ajs:Ajs_0083 methionine synthase (B12-dependent); PFAM: Homocysteine S-methyltransferase; methionine synthase	complement(118327..119358)	Alicycliphilus denitrificans K601	10481124
YP_004386063.1	CDS	Alide2_0109	NC_015422.1	119355	120356	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_0175 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(119355..120356)	Alicycliphilus denitrificans K601	10481125
YP_004386064.1	CDS	Alide2_0110	NC_015422.1	120381	121544	R	KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	complement(120381..121544)	Alicycliphilus denitrificans K601	10481126
YP_004386065.1	CDS	Alide2_0111	NC_015422.1	121541	121924	R	PFAM: Cupin 2, conserved barrel; KEGG: aav:Aave_0177 cupin 2 domain-containing protein; cupin 2 barrel domain-containing protein	complement(121541..121924)	Alicycliphilus denitrificans K601	10481127
YP_004386066.1	CDS	Alide2_0112	NC_015422.1	121941	122906	R	KEGG: xtr:100487983 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein	complement(121941..122906)	Alicycliphilus denitrificans K601	10481128
YP_004386067.1	CDS	Alide2_0113	NC_015422.1	123164	125032	D	TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type; PFAM: RQC domain; Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: dia:Dtpsy_0103 ATP-dependent DNA helicase RecQ; SMART: RQC domain; Helicase, C-terminal; DEAD-like helicase, N-terminal; Helicase/RNase D C-terminal, HRDC domain; ATP-dependent DNA helicase RecQ	123164..125032	Alicycliphilus denitrificans K601	10481129
YP_004386068.1	CDS	Alide2_0114	NC_015422.1	125036	125716	R	KEGG: ajs:Ajs_0085 anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; PFAM: Radical SAM; anaerobic ribonucleoside-triphosphate reductase activating protein	complement(125036..125716)	Alicycliphilus denitrificans K601	10481130
YP_004386069.1	CDS	Alide2_0115	NC_015422.1	125694	125894	R	KEGG: dia:Dtpsy_0105 hypothetical protein; hypothetical protein	complement(125694..125894)	Alicycliphilus denitrificans K601	10481131
YP_004386070.1	CDS	Alide2_0116	NC_015422.1	125977	128007	R	KEGG: dia:Dtpsy_0106 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone; anaerobic ribonucleoside-triphosphate reductase	complement(125977..128007)	Alicycliphilus denitrificans K601	10481132
YP_004386071.1	CDS	Alide2_0117	NC_015422.1	128132	131434	R	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-4; KEGG: ajs:Ajs_0088 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	complement(128132..131434)	Alicycliphilus denitrificans K601	10481133
YP_004386072.1	CDS	Alide2_0118	NC_015422.1	131720	132148	R	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: dia:Dtpsy_0108 hemerythrin HHE cation binding domain-containing protein; Hemerythrin HHE cation binding domain-containing protein	complement(131720..132148)	Alicycliphilus denitrificans K601	10481134
YP_004386073.1	CDS	Alide2_0119	NC_015422.1	132218	134527	R	KEGG: dia:Dtpsy_0109 nitric oxide reductase large subunit; nitric oxide reductase large subunit	complement(132218..134527)	Alicycliphilus denitrificans K601	10481135
YP_004386074.1	CDS	Alide2_0120	NC_015422.1	134679	136280	D	KEGG: dia:Dtpsy_0110 anaerobic nitric oxide reductase transcription regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma54 specific transcriptional regulator	134679..136280	Alicycliphilus denitrificans K601	10481136
YP_004386075.1	CDS	Alide2_0121	NC_015422.1	136333	136995	R	PFAM: Domain of unknown function DUF1794; KEGG: ctt:CtCNB1_2843 hypothetical protein; hypothetical protein	complement(136333..136995)	Alicycliphilus denitrificans K601	10481137
YP_004386076.1	CDS	Alide2_0122	NC_015422.1	137233	138621	D	TIGRFAM: Iron-sulphur-dependent L-serine dehydratase single chain form; KEGG: dia:Dtpsy_0112 L-serine dehydratase 1; PFAM: Serine dehydratase-like, alpha subunit; Serine dehydratase beta chain; L-serine dehydratase 1	137233..138621	Alicycliphilus denitrificans K601	10481138
YP_004386077.1	CDS	Alide2_0123	NC_015422.1	138753	139703	D	KEGG: xtr:100490070 protein bugT-like; hypothetical protein	138753..139703	Alicycliphilus denitrificans K601	10481139
YP_004386078.1	CDS	Alide2_0124	NC_015422.1	139708	141282	D	KEGG: ajs:Ajs_0098 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	139708..141282	Alicycliphilus denitrificans K601	10481140
YP_004386079.1	CDS	Alide2_0125	NC_015422.1	141300	142292	D	KEGG: ajs:Ajs_0099 hypothetical protein; hypothetical protein	141300..142292	Alicycliphilus denitrificans K601	10481141
YP_004386080.1	CDS	Alide2_0126	NC_015422.1	142305	142760	D	KEGG: dia:Dtpsy_0117 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	142305..142760	Alicycliphilus denitrificans K601	10481142
YP_004386081.1	CDS	Alide2_0127	NC_015422.1	142782	143792	R	KEGG: dia:Dtpsy_0118 hypothetical protein; hypothetical protein	complement(142782..143792)	Alicycliphilus denitrificans K601	10481143
YP_004386082.1	CDS	Alide2_0128	NC_015422.1	143832	144818	R	KEGG: dia:Dtpsy_0119 hypothetical protein; hypothetical protein	complement(143832..144818)	Alicycliphilus denitrificans K601	10481144
YP_004386083.1	CDS	Alide2_0129	NC_015422.1	144851	146005	R	KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Long-chain-acyl-CoA dehydrogenase	complement(144851..146005)	Alicycliphilus denitrificans K601	10481145
YP_004386084.1	CDS	Alide2_0130	NC_015422.1	146081	147628	R	KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	complement(146081..147628)	Alicycliphilus denitrificans K601	10481146
YP_004386085.1	CDS	Alide2_0131	NC_015422.1	147834	149012	D	TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0122 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	147834..149012	Alicycliphilus denitrificans K601	10481147
YP_004386086.1	CDS	Alide2_0132	NC_015422.1	149068	149835	D	KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase	149068..149835	Alicycliphilus denitrificans K601	10481148
YP_004386087.1	CDS	Alide2_0133	NC_015422.1	149904	150902	D	KEGG: dia:Dtpsy_0125 hypothetical protein; hypothetical protein	149904..150902	Alicycliphilus denitrificans K601	10481149
YP_004386088.1	CDS	Alide2_0134	NC_015422.1	150912	151718	D	KEGG: ajs:Ajs_0109 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 2,4-dienoyl-CoA reductase	150912..151718	Alicycliphilus denitrificans K601	10481150
YP_004386089.1	CDS	Alide2_0135	NC_015422.1	151715	151819	D	hypothetical protein	151715..151819	Alicycliphilus denitrificans K601	10481151
YP_004386090.1	CDS	Alide2_0136	NC_015422.1	151856	152635	D	KEGG: dia:Dtpsy_0128 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	151856..152635	Alicycliphilus denitrificans K601	10481152
YP_004386091.1	CDS	Alide2_0137	NC_015422.1	152730	153839	D	KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase	152730..153839	Alicycliphilus denitrificans K601	10481153
YP_004386092.1	CDS	Alide2_0138	NC_015422.1	153943	154359	R	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: reh:H16_A2147 hypothetical protein; hypothetical protein	complement(153943..154359)	Alicycliphilus denitrificans K601	10481154
YP_004386093.1	CDS	Alide2_0139	NC_015422.1	154361	155521	R	KEGG: reh:H16_A2148 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase	complement(154361..155521)	Alicycliphilus denitrificans K601	10481155
YP_004386094.1	CDS	Alide2_0140	NC_015422.1	155544	156701	R	KEGG: reh:H16_A2149 acyl-CoA dehydrogenase, long-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Long-chain-acyl-CoA dehydrogenase	complement(155544..156701)	Alicycliphilus denitrificans K601	10481156
YP_004386095.1	CDS	Alide2_0141	NC_015422.1	156736	158277	R	KEGG: reh:H16_A2150 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	complement(156736..158277)	Alicycliphilus denitrificans K601	10481157
YP_004386096.1	CDS	Alide2_0142	NC_015422.1	158264	159199	R	KEGG: reh:H16_A2151 putative acyl dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	complement(158264..159199)	Alicycliphilus denitrificans K601	10481158
YP_004386097.1	CDS	Alide2_0143	NC_015422.1	159217	160140	R	KEGG: reh:H16_A2152 short chain dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase	complement(159217..160140)	Alicycliphilus denitrificans K601	10481159
YP_004386098.1	CDS	Alide2_0144	NC_015422.1	160166	161149	R	KEGG: reh:H16_A2153 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(160166..161149)	Alicycliphilus denitrificans K601	10481160
YP_004386099.1	CDS	Alide2_0145	NC_015422.1	161379	162164	D	KEGG: reh:H16_A2154 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	161379..162164	Alicycliphilus denitrificans K601	10481161
YP_004386100.1	CDS	Alide2_0146	NC_015422.1	162184	163440	R	KEGG: ajs:Ajs_0113 major facilitator superfamily transporter; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein	complement(162184..163440)	Alicycliphilus denitrificans K601	10481162
YP_004386101.1	CDS	Alide2_0147	NC_015422.1	163481	164344	R	KEGG: dia:Dtpsy_0131 HpcH/HpaI aldolase; PFAM: Aldehyde-lyase domain; Citryl-CoA lyase	complement(163481..164344)	Alicycliphilus denitrificans K601	10481163
YP_004386102.1	CDS	Alide2_0148	NC_015422.1	164377	165372	R	KEGG: dia:Dtpsy_0133 hypothetical protein; hypothetical protein	complement(164377..165372)	Alicycliphilus denitrificans K601	10481164
YP_004386103.1	CDS	Alide2_0149	NC_015422.1	165446	166831	R	PFAM: MmgE/PrpD; KEGG: dia:Dtpsy_0134 MmgE/PrpD family protein; MmgE/PrpD family protein	complement(165446..166831)	Alicycliphilus denitrificans K601	10481165
YP_004386104.1	CDS	Alide2_0150	NC_015422.1	166882	168063	R	KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(166882..168063)	Alicycliphilus denitrificans K601	10481166
YP_004386105.1	CDS	Alide2_0151	NC_015422.1	168074	169240	R	KEGG: dac:Daci_0198 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	complement(168074..169240)	Alicycliphilus denitrificans K601	10481167
YP_004386106.1	CDS	Alide2_0152	NC_015422.1	169314	170198	R	KEGG: dia:Dtpsy_0137 hypothetical protein; hypothetical protein	complement(169314..170198)	Alicycliphilus denitrificans K601	10481168
YP_004386107.1	CDS	Alide2_0153	NC_015422.1	170392	171309	D	KEGG: dia:Dtpsy_0138 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase	170392..171309	Alicycliphilus denitrificans K601	10481169
YP_004386108.1	CDS	Alide2_0154	NC_015422.1	171313	172206	D	KEGG: ajs:Ajs_0121 dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	171313..172206	Alicycliphilus denitrificans K601	10481170
YP_004386109.1	CDS	Alide2_0155	NC_015422.1	172289	173083	D	PFAM: Crotonase, core; KEGG: dia:Dtpsy_0140 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	172289..173083	Alicycliphilus denitrificans K601	10481171
YP_004386110.1	CDS	Alide2_0156	NC_015422.1	173220	174503	D	PFAM: Acetyl-CoA hydrolase/transferase; KEGG: ajs:Ajs_0123 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase	173220..174503	Alicycliphilus denitrificans K601	10481172
YP_004386111.1	CDS	Alide2_0157	NC_015422.1	174570	175778	D	TIGRFAM: Thiolase; KEGG: ajs:Ajs_0124 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	174570..175778	Alicycliphilus denitrificans K601	10481173
YP_004386112.1	CDS	Alide2_0158	NC_015422.1	175793	176716	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0188 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(175793..176716)	Alicycliphilus denitrificans K601	10481174
YP_004386113.1	CDS	Alide2_0159	NC_015422.1	176894	178078	D	KEGG: dac:Daci_0189 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	176894..178078	Alicycliphilus denitrificans K601	10481175
YP_004386114.1	CDS	Alide2_0160	NC_015422.1	178093	179118	D	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dac:Daci_0190 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase	178093..179118	Alicycliphilus denitrificans K601	10481176
YP_004386115.1	CDS	Alide2_0161	NC_015422.1	179115	180140	D	KEGG: xtr:100498142 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein	179115..180140	Alicycliphilus denitrificans K601	10481177
YP_004386116.1	CDS	Alide2_0162	NC_015422.1	180171	181079	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3679 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(180171..181079)	Alicycliphilus denitrificans K601	10481178
YP_004386117.1	CDS	Alide2_0163	NC_015422.1	181189	182172	D	KEGG: aav:Aave_3678 hypothetical protein; hypothetical protein	181189..182172	Alicycliphilus denitrificans K601	10481179
YP_004386118.1	CDS	Alide2_0164	NC_015422.1	182169	183368	D	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: aav:Aave_3677 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase	182169..183368	Alicycliphilus denitrificans K601	10481180
YP_004386119.1	CDS	Alide2_0165	NC_015422.1	183548	184528	D	KEGG: ajs:Ajs_0125 hypothetical protein; hypothetical protein	183548..184528	Alicycliphilus denitrificans K601	10481181
YP_004386120.1	CDS	Alide2_0166	NC_015422.1	184530	186038	D	KEGG: dac:Daci_0186 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	184530..186038	Alicycliphilus denitrificans K601	10481182
YP_004386121.1	CDS	Alide2_0167	NC_015422.1	186056	187039	D	KEGG: xtr:100497979 hypothetical protein LOC100497979; hypothetical protein	186056..187039	Alicycliphilus denitrificans K601	10481183
YP_004386122.1	CDS	Alide2_0168	NC_015422.1	187094	188095	R	KEGG: reh:H16_B1474 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(187094..188095)	Alicycliphilus denitrificans K601	10481184
YP_004386123.1	CDS	Alide2_0169	NC_015422.1	188116	189297	R	PFAM: Peptidase M20; Peptidase M20, dimerisation; manually curated; KEGG: reu:Reut_B4300 peptidase M20D, amidohydrolase; TIGRFAM: Peptidase M20D, amidohydrolase; amidohydrolase	complement(188116..189297)	Alicycliphilus denitrificans K601	10481185
YP_004386124.1	CDS	Alide2_0170	NC_015422.1	189562	189981	D	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: ajs:Ajs_0128 hypothetical protein; hypothetical protein	189562..189981	Alicycliphilus denitrificans K601	10481186
YP_004386125.1	CDS	Alide2_0171	NC_015422.1	189978	191186	D	PFAM: Thiolase, C-terminal; KEGG: ajs:Ajs_0129 thiolase; thiolase domain-containing protein	189978..191186	Alicycliphilus denitrificans K601	10481187
YP_004386126.1	CDS	Alide2_0172	NC_015422.1	191206	192363	D	KEGG: dia:Dtpsy_0148 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	191206..192363	Alicycliphilus denitrificans K601	10481188
YP_004386127.1	CDS	Alide2_0173	NC_015422.1	192360	192791	D	KEGG: dac:Daci_0175 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	192360..192791	Alicycliphilus denitrificans K601	10481189
YP_004386128.1	CDS	Alide2_0174	NC_015422.1	192788	193537	R	KEGG: vei:Veis_2216 regulatory proteins, IclR; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(192788..193537)	Alicycliphilus denitrificans K601	10481190
YP_004386129.1	CDS	Alide2_0175	NC_015422.1	193668	194654	D	KEGG: vei:Veis_2212 hypothetical protein; hypothetical protein	193668..194654	Alicycliphilus denitrificans K601	10481191
YP_004386130.1	CDS	Alide2_0176	NC_015422.1	194651	195511	D	KEGG: vei:Veis_2211 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; trans-2-enoyl-CoA reductase (NADPH)	194651..195511	Alicycliphilus denitrificans K601	10481192
YP_004386131.1	CDS	Alide2_0177	NC_015422.1	195511	196659	D	KEGG: reu:Reut_B5206 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	195511..196659	Alicycliphilus denitrificans K601	10481193
YP_004386132.1	CDS	Alide2_0178	NC_015422.1	196709	198328	D	KEGG: axy:AXYL_05145 methylcrotonoyl-CoA carboxylase subunit beta; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase	196709..198328	Alicycliphilus denitrificans K601	10481194
YP_004386133.1	CDS	Alide2_0179	NC_015422.1	198339	199502	D	KEGG: reu:Reut_B4462 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Isovaleryl-CoA dehydrogenase	198339..199502	Alicycliphilus denitrificans K601	10481195
YP_004386134.1	CDS	Alide2_0180	NC_015422.1	199504	200325	D	PFAM: Crotonase, core; KEGG: vei:Veis_2207 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	199504..200325	Alicycliphilus denitrificans K601	10481196
YP_004386135.1	CDS	Alide2_0181	NC_015422.1	200339	202333	D	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: reu:Reut_B4460 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase	200339..202333	Alicycliphilus denitrificans K601	10481197
YP_004386136.1	CDS	Alide2_0182	NC_015422.1	202330	204144	D	PFAM: Protein of unknown function DUF1446; KEGG: reu:Reut_B4459 hypothetical protein; hypothetical protein	202330..204144	Alicycliphilus denitrificans K601	10481198
YP_004386137.1	CDS	Alide2_0183	NC_015422.1	204168	205148	D	KEGG: axy:AXYL_05150 extra-cytoplasmic solute receptor family protein 140; extra-cytoplasmic solute receptor family protein	204168..205148	Alicycliphilus denitrificans K601	10481199
YP_004386138.1	CDS	Alide2_0184	NC_015422.1	205156	206376	D	KEGG: vei:Veis_2206 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	205156..206376	Alicycliphilus denitrificans K601	10481200
YP_004386139.1	CDS	Alide2_0185	NC_015422.1	206422	207339	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0150 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(206422..207339)	Alicycliphilus denitrificans K601	10481201
YP_004386140.1	CDS	Alide2_0186	NC_015422.1	207449	208726	D	KEGG: dia:Dtpsy_0151 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	207449..208726	Alicycliphilus denitrificans K601	10481202
YP_004386141.1	CDS	Alide2_0187	NC_015422.1	208778	209677	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0218 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(208778..209677)	Alicycliphilus denitrificans K601	10481203
YP_004386142.1	CDS	Alide2_0188	NC_015422.1	209815	210828	D	KEGG: ctt:CtCNB1_0219 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein	209815..210828	Alicycliphilus denitrificans K601	10481204
YP_004386143.1	CDS	Alide2_0189	NC_015422.1	210960	212150	D	KEGG: ajs:Ajs_0117 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	210960..212150	Alicycliphilus denitrificans K601	10481205
YP_004386144.1	CDS	Alide2_0190	NC_015422.1	212175	213467	R	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: dia:Dtpsy_0153 Glu/Leu/Phe/Val dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate dehydrogenase	complement(212175..213467)	Alicycliphilus denitrificans K601	10481206
YP_004386145.1	CDS	Alide2_0191	NC_015422.1	213654	214103	D	PFAM: Transmembrane pair, bacterial; KEGG: dia:Dtpsy_0156 transmembrane pair domain protein; transmembrane pair domain-containing protein	213654..214103	Alicycliphilus denitrificans K601	10481207
YP_004386146.1	CDS	Alide2_0192	NC_015422.1	214150	215085	D	PFAM: SdiA-regulated; KEGG: psa:PST_0402 hypothetical protein; SdiA-regulated domain-containing protein	214150..215085	Alicycliphilus denitrificans K601	10481208
YP_004386147.1	CDS	Alide2_0193	NC_015422.1	215213	217948	D	TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; KEGG: dac:Daci_0232 methionine synthase; PFAM: Vitamin B12-dependent methionine synthase, activation domain; Methionine synthase, cobalamin (vitamin B12)-binding module, cap; Cobalamin (vitamin B12)-binding; Pterin-binding; methionine synthase	215213..217948	Alicycliphilus denitrificans K601	10481209
YP_004386148.1	CDS	Alide2_0194	NC_015422.1	218107	221196	D	TIGRFAM: CRISPR-associated protein, SAG0894; KEGG: vei:Veis_1230 CRISPR-associated endonuclease Csn1 family protein; CRISPR-associated protein, Csn1 family	218107..221196	Alicycliphilus denitrificans K601	10481210
YP_004386149.1	CDS	Alide2_0195	NC_015422.1	221202	222131	D	KEGG: vei:Veis_1231 CRISPR-associated Cas1 family protein; TIGRFAM: CRISPR-associated protein Cas1, NMENI subtype; CRISPR-associated protein Cas1; PFAM: CRISPR-associated protein Cas1; CRISPR-associated protein Cas1	221202..222131	Alicycliphilus denitrificans K601	10481211
YP_004386150.1	CDS	Alide2_0196	NC_015422.1	222174	222389	D	KEGG: vei:Veis_1232 CRISPR-associated Cas2 family protein; TIGRFAM: CRISPR associated protein Cas2; PFAM: Virulence-associated protein D / CRISPR associated protein Cas2; CRISPR-associated protein Cas2	222174..222389	Alicycliphilus denitrificans K601	10481212
YP_004386151.1	CDS	Alide2_0198	NC_015422.1	222726	224240	R	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	complement(222726..224240)	Alicycliphilus denitrificans K601	10481214
YP_004386152.1	CDS	Alide2_0199	NC_015422.1	224323	224655	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(224323..224655)	Alicycliphilus denitrificans K601	10481215
YP_004386153.1	CDS	Alide2_0200	NC_015422.1	224652	225080	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(224652..225080)	Alicycliphilus denitrificans K601	10481216
YP_004386154.1	CDS	Alide2_0202	NC_015422.1	226463	227278	D	KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	226463..227278	Alicycliphilus denitrificans K601	10481218
YP_004386155.1	CDS	Alide2_0204	NC_015422.1	232822	233364	R	KEGG: dia:Dtpsy_0168 shikimate kinase; PFAM: Shikimate kinase; Shikimate kinase	complement(232822..233364)	Alicycliphilus denitrificans K601	10481220
YP_004386156.1	CDS	Alide2_0205	NC_015422.1	233470	234369	D	PFAM: Ribonuclease BN-related; KEGG: ajs:Ajs_0151 ribonuclease BN; ribonuclease BN	233470..234369	Alicycliphilus denitrificans K601	10481221
YP_004386157.1	CDS	Alide2_0206	NC_015422.1	234495	235211	D	PFAM: Rickettsia 17kDa surface antigen; KEGG: ajs:Ajs_0152 17 kDa surface antigen; 17 kDa surface antigen	234495..235211	Alicycliphilus denitrificans K601	10481222
YP_004386158.1	CDS	Alide2_0207	NC_015422.1	235268	236041	R	KEGG: ajs:Ajs_0153 ferredoxin--NADP(+) reductase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; ferredoxin--NADP(+) reductase	complement(235268..236041)	Alicycliphilus denitrificans K601	10481223
YP_004386159.1	CDS	Alide2_0208	NC_015422.1	236234	237430	D	PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor; extracellular ligand-binding receptor	236234..237430	Alicycliphilus denitrificans K601	10481224
YP_004386160.1	CDS	Alide2_0209	NC_015422.1	237447	239345	D	PFAM: ABC transporter permease; KEGG: ajs:Ajs_0155 inner-membrane translocator; ABC transporter permease	237447..239345	Alicycliphilus denitrificans K601	10481225
YP_004386161.1	CDS	Alide2_0210	NC_015422.1	239342	240880	D	PFAM: ABC transporter-like; KEGG: vei:Veis_0860 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	239342..240880	Alicycliphilus denitrificans K601	10481226
YP_004386162.1	CDS	Alide2_0211	NC_015422.1	241028	243928	D	KEGG: kpe:KPK_1160 peptidoglycan binding domain/papain family cysteine protease; PFAM: Peptidase C1A, papain C-terminal; SMART: Peptidase C1A, papain C-terminal; peptidase C1A papain	241028..243928	Alicycliphilus denitrificans K601	10481227
YP_004386163.1	CDS	Alide2_0214	NC_015422.1	245625	247160	R	TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: dia:Dtpsy_0179 Mg chelatase, subunit ChlI; SMART: ATPase, AAA+ type, core; Mg chelatase subunit ChlI	complement(245625..247160)	Alicycliphilus denitrificans K601	10481230
YP_004386164.1	CDS	Alide2_0215	NC_015422.1	247299	248030	D	KEGG: dia:Dtpsy_0180 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02001; PFAM: Conserved hypothetical protein CHP02001; hypothetical protein	247299..248030	Alicycliphilus denitrificans K601	10481231
YP_004386165.1	CDS	Alide2_0216	NC_015422.1	248050	248388	D	KEGG: aav:Aave_0233 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II	248050..248388	Alicycliphilus denitrificans K601	10481232
YP_004386166.1	CDS	Alide2_0217	NC_015422.1	248411	249799	D	KEGG: ajs:Ajs_0164 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter	248411..249799	Alicycliphilus denitrificans K601	10481233
YP_004386167.1	CDS	Alide2_0218	NC_015422.1	250530	250853	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	250530..250853	Alicycliphilus denitrificans K601	10481234
YP_004386168.1	CDS	Alide2_0221	NC_015422.1	252923	253726	D	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	252923..253726	Alicycliphilus denitrificans K601	10481237
YP_004386169.1	CDS	Alide2_0222	NC_015422.1	253777	253902	R	hypothetical protein	complement(253777..253902)	Alicycliphilus denitrificans K601	10481238
YP_004386170.1	CDS	Alide2_0223	NC_015422.1	254064	254954	R	KEGG: esa:ESA_04058 hypothetical protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase	complement(254064..254954)	Alicycliphilus denitrificans K601	10481239
YP_004386171.1	CDS	Alide2_0224	NC_015422.1	254951	255811	R	PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10; alpha/beta hydrolase fold protein	complement(254951..255811)	Alicycliphilus denitrificans K601	10481240
YP_004386172.1	CDS	Alide2_0225	NC_015422.1	255801	256151	R	KEGG: axy:AXYL_03188 hypothetical protein; hypothetical protein	complement(255801..256151)	Alicycliphilus denitrificans K601	10481241
YP_004386173.1	CDS	Alide2_0226	NC_015422.1	256234	257301	R	KEGG: vap:Vapar_4786 membrane protein AbrB duplication; TIGRFAM: AbrB duplication, membrane protein; PFAM: Putative ammonia monooxygenase; membrane protein AbrB	complement(256234..257301)	Alicycliphilus denitrificans K601	10481242
YP_004386174.1	CDS	Alide2_0228	NC_015422.1	258805	259959	D	KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	258805..259959	Alicycliphilus denitrificans K601	10481244
YP_004386175.1	CDS	Alide2_0229	NC_015422.1	259983	260957	D	KEGG: vei:Veis_3320 hypothetical protein; hypothetical protein	259983..260957	Alicycliphilus denitrificans K601	10481245
YP_004386176.1	CDS	Alide2_0230	NC_015422.1	260954	263029	D	KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein	260954..263029	Alicycliphilus denitrificans K601	10481246
YP_004386177.1	CDS	Alide2_0231	NC_015422.1	263103	264215	D	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: dia:Dtpsy_0184 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein	263103..264215	Alicycliphilus denitrificans K601	10481247
YP_004386178.1	CDS	Alide2_0232	NC_015422.1	264218	264991	D	PFAM: Protein of unknown function DUF1275; KEGG: dia:Dtpsy_0185 protein of unknown function DUF1275; hypothetical protein	264218..264991	Alicycliphilus denitrificans K601	10481248
YP_004386179.1	CDS	Alide2_0233	NC_015422.1	265028	266266	D	PFAM: Cysteine-rich domain; 4Fe-4S binding domain; KEGG: ajs:Ajs_0168 glycolate oxidase iron-sulfur subunit; hypothetical protein	265028..266266	Alicycliphilus denitrificans K601	10481249
YP_004386180.1	CDS	Alide2_0234	NC_015422.1	266329	267171	D	KEGG: dia:Dtpsy_0187 ProQ activator of osmoprotectant transporter ProP; PFAM: Fertility inhibition FinO/ProQ; SMART: Fertility inhibition FinO/ProQ; Fertility inhibition FinO-like protein	266329..267171	Alicycliphilus denitrificans K601	10481250
YP_004386181.1	CDS	Alide2_0235	NC_015422.1	267229	268113	R	PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0174 hypothetical protein; hypothetical protein	complement(267229..268113)	Alicycliphilus denitrificans K601	10481251
YP_004386182.1	CDS	Alide2_0236	NC_015422.1	268167	269444	R	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0193 lysophospholipid transporter LplT; major facilitator superfamily protein	complement(268167..269444)	Alicycliphilus denitrificans K601	10481252
YP_004386183.1	CDS	Alide2_0237	NC_015422.1	269588	270682	D	PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: ajs:Ajs_0176 alanine racemase; alanine racemase	269588..270682	Alicycliphilus denitrificans K601	10481253
YP_004386184.1	CDS	Alide2_0238	NC_015422.1	270901	271920	D	KEGG: dia:Dtpsy_0196 cytochrome-c peroxidase; PFAM: Di-haem cytochrome c peroxidase; Cytochrome c, class I; cytochrome-c peroxidase	270901..271920	Alicycliphilus denitrificans K601	10481254
YP_004386185.1	CDS	Alide2_0239	NC_015422.1	272000	272614	R	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0197 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein	complement(272000..272614)	Alicycliphilus denitrificans K601	10481255
YP_004386186.1	CDS	Alide2_0240	NC_015422.1	272745	274127	D	TIGRFAM: DNA repair protein RadA; PFAM: Circadian clock protein KaiC/DNA repair protein RadA; KEGG: dia:Dtpsy_0199 DNA repair protein RadA; SMART: ATPase, AAA+ type, core; DNA repair protein RadA	272745..274127	Alicycliphilus denitrificans K601	10481256
YP_004386187.1	CDS	Alide2_0241	NC_015422.1	274131	275117	R	KEGG: rme:Rmet_1769 hypothetical protein; hypothetical protein	complement(274131..275117)	Alicycliphilus denitrificans K601	10481257
YP_004386188.1	CDS	Alide2_0242	NC_015422.1	275142	276566	R	PFAM: Amidase; KEGG: reh:H16_A1882 Asp-tRNA Asn / Glu-tRNA Gln amidotransferase A subunit or related amidase; amidase	complement(275142..276566)	Alicycliphilus denitrificans K601	10481258
YP_004386189.1	CDS	Alide2_0243	NC_015422.1	276732	277148	D	KEGG: ajs:Ajs_0181 hypothetical protein; hypothetical protein	276732..277148	Alicycliphilus denitrificans K601	10481259
YP_004386190.1	CDS	Alide2_0244	NC_015422.1	277193	278131	D	TIGRFAM: Branched-chain amino acid aminotransferase I; KEGG: ajs:Ajs_0182 branched-chain amino acid aminotransferase; PFAM: Aminotransferase, class IV; branched-chain amino acid aminotransferase	277193..278131	Alicycliphilus denitrificans K601	10481260
YP_004386191.1	CDS	Alide2_0245	NC_015422.1	278139	278345	D	KEGG: ajs:Ajs_0183 hypothetical protein; hypothetical protein	278139..278345	Alicycliphilus denitrificans K601	10481261
YP_004386192.1	CDS	Alide2_0246	NC_015422.1	278420	279772	D	PFAM: O-antigen ligase-related; KEGG: ajs:Ajs_0184 O-antigen polymerase; O-antigen polymerase	278420..279772	Alicycliphilus denitrificans K601	10481262
YP_004386193.1	CDS	Alide2_0247	NC_015422.1	279765	280880	D	PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0185 glycosyl transferase, group 1; group 1 glycosyl transferase	279765..280880	Alicycliphilus denitrificans K601	10481263
YP_004386194.1	CDS	Alide2_0248	NC_015422.1	280877	281923	D	PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0186 glycosyl transferase family protein; family 2 glycosyl transferase	280877..281923	Alicycliphilus denitrificans K601	10481264
YP_004386195.1	CDS	Alide2_0249	NC_015422.1	281920	282894	D	KEGG: ajs:Ajs_0187 hypothetical protein; hypothetical protein	281920..282894	Alicycliphilus denitrificans K601	10481265
YP_004386196.1	CDS	Alide2_0250	NC_015422.1	282963	284027	R	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_0188 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD	complement(282963..284027)	Alicycliphilus denitrificans K601	10481266
YP_004386197.1	CDS	Alide2_0251	NC_015422.1	284024	284890	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0189 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(284024..284890)	Alicycliphilus denitrificans K601	10481267
YP_004386198.1	CDS	Alide2_0252	NC_015422.1	284946	286175	D	PFAM: Domain of unknown function DUF1228; KEGG: dia:Dtpsy_0209 protein of unknown function DUF1228; hypothetical protein	284946..286175	Alicycliphilus denitrificans K601	10481268
YP_004386199.1	CDS	Alide2_0253	NC_015422.1	286179	286898	R	PFAM: Molybdenum cofactor sulfurase, C-terminal; KEGG: dia:Dtpsy_0210 MOSC domain containing protein; MOSC domain-containing protein	complement(286179..286898)	Alicycliphilus denitrificans K601	10481269
YP_004386200.1	CDS	Alide2_0254	NC_015422.1	286895	287455	R	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_0211 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen	complement(286895..287455)	Alicycliphilus denitrificans K601	10481270
YP_004386201.1	CDS	Alide2_0255	NC_015422.1	287474	287968	R	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: oca:OCAR_5014 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein	complement(287474..287968)	Alicycliphilus denitrificans K601	10481271
YP_004386202.1	CDS	Alide2_0256	NC_015422.1	288068	288529	R	PFAM: MaoC-like dehydratase; KEGG: dac:Daci_0013 dehydratase; MaoC domain-containing protein dehydratase	complement(288068..288529)	Alicycliphilus denitrificans K601	10481272
YP_004386203.1	CDS	Alide2_0257	NC_015422.1	288551	289522	R	KEGG: dac:Daci_0012 hypothetical protein; hypothetical protein	complement(288551..289522)	Alicycliphilus denitrificans K601	10481273
YP_004386204.1	CDS	Alide2_0258	NC_015422.1	289676	290605	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0011 LysR family transcriptional regulator; LysR family transcriptional regulator	289676..290605	Alicycliphilus denitrificans K601	10481274
YP_004386205.1	CDS	Alide2_0259	NC_015422.1	290730	291896	D	KEGG: axy:AXYL_02637 CoA-transferase family III family protein 17; PFAM: CoA-transferase family III; formyl-CoA transferase	290730..291896	Alicycliphilus denitrificans K601	10481275
YP_004386206.1	CDS	Alide2_0260	NC_015422.1	291914	293125	R	KEGG: dia:Dtpsy_0212 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(291914..293125)	Alicycliphilus denitrificans K601	10481276
YP_004386207.1	CDS	Alide2_0261	NC_015422.1	293135	293845	R	KEGG: ajs:Ajs_0194 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(293135..293845)	Alicycliphilus denitrificans K601	10481277
YP_004386208.1	CDS	Alide2_0262	NC_015422.1	293941	295299	R	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_0214 major facilitator superfamily MFS_1; major facilitator superfamily protein	complement(293941..295299)	Alicycliphilus denitrificans K601	10481278
YP_004386209.1	CDS	Alide2_0263	NC_015422.1	295309	295974	D	KEGG: dia:Dtpsy_0215 transcriptional regulator, AraC family; PFAM: Cupin 2, conserved barrel; SMART: Helix-turn-helix, AraC type, DNA binding domain; cupin 2 barrel domain-containing protein	295309..295974	Alicycliphilus denitrificans K601	10481279
YP_004386210.1	CDS	Alide2_0264	NC_015422.1	296088	296981	D	PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0201 hypothetical protein; hypothetical protein	296088..296981	Alicycliphilus denitrificans K601	10481280
YP_004386211.1	CDS	Alide2_0265	NC_015422.1	296978	297832	D	PFAM: Peptidase M48; KEGG: ajs:Ajs_0203 peptidase M48, Ste24p; peptidase M48 Ste24p	296978..297832	Alicycliphilus denitrificans K601	10481281
YP_004386212.1	CDS	Alide2_0268	NC_015422.1	298389	299144	R	KEGG: ajs:Ajs_0204 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator	complement(298389..299144)	Alicycliphilus denitrificans K601	10481284
YP_004386213.1	CDS	Alide2_0269	NC_015422.1	299146	300852	R	KEGG: lch:Lcho_3364 putative sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Activator of aromatic catabolism; Helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: ATPase, AAA+ type, core; Fis family sigma54 specific transcriptional regulator	complement(299146..300852)	Alicycliphilus denitrificans K601	10481285
YP_004386214.1	CDS	Alide2_0270	NC_015422.1	301084	301395	D	PFAM: Phenol hydroxylase subunit; KEGG: avn:Avin_30760 multi-component phenol hydoxylase, assembly subunit; LapK; phenol hydroxylase subunit	301084..301395	Alicycliphilus denitrificans K601	10481286
YP_004386215.1	CDS	Alide2_0271	NC_015422.1	301439	302431	D	KEGG: azo:azo2443 phenol hydroxylase subunit P1; PFAM: Methane/phenol/toluene hydroxylase; Phenol 2-monooxygenase	301439..302431	Alicycliphilus denitrificans K601	10481287
YP_004386216.1	CDS	Alide2_0272	NC_015422.1	302454	302723	D	PFAM: Monooxygenase component MmoB/DmpM; KEGG: azo:azo2442 phenol hydrolase subunit P2; monooxygenase component MmoB/DmpM	302454..302723	Alicycliphilus denitrificans K601	10481288
YP_004386217.1	CDS	Alide2_0273	NC_015422.1	302749	304296	D	KEGG: azo:azo2441 phenol hydroxylase subunit P3; PFAM: Methane/phenol/toluene hydroxylase; YHS; Phenol 2-monooxygenase	302749..304296	Alicycliphilus denitrificans K601	10481289
YP_004386218.1	CDS	Alide2_0274	NC_015422.1	304363	304719	D	PFAM: Phenol hydroxylase,conserved region; KEGG: rpf:Rpic12D_3551 phenol hydroxylase conserved region; Phenol hydroxylase conserved region	304363..304719	Alicycliphilus denitrificans K601	10481290
YP_004386219.1	CDS	Alide2_0275	NC_015422.1	304790	305860	D	KEGG: azo:azo1850 phenol 2-monooxygenase; PFAM: Oxidoreductase, FAD-binding domain; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; Phenol 2-monooxygenase	304790..305860	Alicycliphilus denitrificans K601	10481291
YP_004386220.1	CDS	Alide2_0276	NC_015422.1	305874	306215	D	PFAM: Ferredoxin; KEGG: ajs:Ajs_0217 ferredoxin; ferredoxin	305874..306215	Alicycliphilus denitrificans K601	10481292
YP_004386221.1	CDS	Alide2_0277	NC_015422.1	306238	307164	D	TIGRFAM: Catechol 2,3 dioxygenase; KEGG: ajs:Ajs_0218 catechol 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3 dioxygenase	306238..307164	Alicycliphilus denitrificans K601	10481293
YP_004386222.1	CDS	Alide2_0278	NC_015422.1	307164	307595	D	PFAM: Domain of unknown function DUF336; KEGG: ajs:Ajs_0219 hypothetical protein; hypothetical protein	307164..307595	Alicycliphilus denitrificans K601	10481294
YP_004386223.1	CDS	Alide2_0279	NC_015422.1	307608	308504	D	KEGG: ctt:CtCNB1_3154 ZorfX; hypothetical protein	307608..308504	Alicycliphilus denitrificans K601	10481295
YP_004386224.1	CDS	Alide2_0280	NC_015422.1	309275	310735	D	TIGRFAM: 2-hydroxymuconic semialdehyde dehydrogenase; KEGG: ajs:Ajs_0220 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; 2-hydroxymuconic semialdehyde dehydrogenase	309275..310735	Alicycliphilus denitrificans K601	10481296
YP_004386225.1	CDS	Alide2_0281	NC_015422.1	310797	311660	D	KEGG: ctt:CtCNB1_3150 alpha/beta hydrolase fold protein; PFAM: Alpha/beta hydrolase fold-1; 2,6-dioxo-6-phenylhexa-3-enoate hydrolase	310797..311660	Alicycliphilus denitrificans K601	10481297
YP_004386226.1	CDS	Alide2_0282	NC_015422.1	311665	312447	D	TIGRFAM: 2-oxopent-4-enoate hydratase; KEGG: ajs:Ajs_0222 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; 2-oxopent-4-enoate hydratase	311665..312447	Alicycliphilus denitrificans K601	10481298
YP_004386227.1	CDS	Alide2_0283	NC_015422.1	312466	313380	D	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Acetaldehyde dehydrogenase; KEGG: ajs:Ajs_0223 acetaldehyde dehydrogenase; PFAM: Acetaldehyde dehydrogenase, C-terminal; Semialdehyde dehydrogenase, NAD-binding; acetaldehyde dehydrogenase	312466..313380	Alicycliphilus denitrificans K601	10481299
YP_004386228.1	CDS	Alide2_0284	NC_015422.1	313395	314432	D	TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; KEGG: ajs:Ajs_0224 4-hydroxy-2-ketovalerate aldolase; PFAM: Pyruvate carboxyltransferase; DmpG-like communication; 4-hydroxy-2-oxovalerate aldolase	313395..314432	Alicycliphilus denitrificans K601	10481300
YP_004386229.1	CDS	Alide2_0285	NC_015422.1	314466	315254	D	TIGRFAM: 4-oxalocrotonate decarboxylase; KEGG: ajs:Ajs_0225 4-oxalocrotonate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; 4-oxalocrotonate decarboxylase	314466..315254	Alicycliphilus denitrificans K601	10481301
YP_004386230.1	CDS	Alide2_0286	NC_015422.1	315295	316263	D	KEGG: ctt:CtCNB1_3145 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein	315295..316263	Alicycliphilus denitrificans K601	10481302
YP_004386231.1	CDS	Alide2_0287	NC_015422.1	316290	316481	D	KEGG: ajs:Ajs_0227 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase family enzyme	316290..316481	Alicycliphilus denitrificans K601	10481303
YP_004386232.1	CDS	Alide2_0288	NC_015422.1	316546	317184	R	KEGG: ajs:Ajs_0228 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	complement(316546..317184)	Alicycliphilus denitrificans K601	10481304
YP_004386233.1	CDS	Alide2_0289	NC_015422.1	317250	318002	R	KEGG: dac:Daci_4281 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(317250..318002)	Alicycliphilus denitrificans K601	10481305
YP_004386234.1	CDS	Alide2_0290	NC_015422.1	318127	319107	D	KEGG: dac:Daci_4280 hypothetical protein; hypothetical protein	318127..319107	Alicycliphilus denitrificans K601	10481306
YP_004386235.1	CDS	Alide2_0291	NC_015422.1	319115	319987	D	PFAM: Amidohydrolase 2; KEGG: dac:Daci_4279 amidohydrolase 2; amidohydrolase 2	319115..319987	Alicycliphilus denitrificans K601	10481307
YP_004386236.1	CDS	Alide2_0292	NC_015422.1	320010	320999	D	KEGG: dac:Daci_4278 hypothetical protein; hypothetical protein	320010..320999	Alicycliphilus denitrificans K601	10481308
YP_004386237.1	CDS	Alide2_0293	NC_015422.1	321032	321718	D	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4277 dimethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase	321032..321718	Alicycliphilus denitrificans K601	10481309
YP_004386238.1	CDS	Alide2_0294	NC_015422.1	321715	322632	D	KEGG: vap:Vapar_5586 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase	321715..322632	Alicycliphilus denitrificans K601	10481310
YP_004386239.1	CDS	Alide2_0295	NC_015422.1	322657	323646	D	KEGG: vap:Vapar_3894 hypothetical protein; hypothetical protein	322657..323646	Alicycliphilus denitrificans K601	10481311
YP_004386240.1	CDS	Alide2_0296	NC_015422.1	323993	324949	D	KEGG: dac:Daci_4274 hypothetical protein; hypothetical protein	323993..324949	Alicycliphilus denitrificans K601	10481312
YP_004386241.1	CDS	Alide2_0297	NC_015422.1	324955	325830	D	PFAM: Amidohydrolase 2; KEGG: dac:Daci_4273 amidohydrolase 2; amidohydrolase 2	324955..325830	Alicycliphilus denitrificans K601	10481313
YP_004386242.1	CDS	Alide2_0298	NC_015422.1	325843	326760	D	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: dac:Daci_4272 SMP-30/gluconolaconase/LRE domain-containing protein; SMP-30/gluconolaconase/LRE-like region-containing protein	325843..326760	Alicycliphilus denitrificans K601	10481314
YP_004386243.1	CDS	Alide2_0299	NC_015422.1	326772	327755	R	KEGG: rme:Rmet_4433 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(326772..327755)	Alicycliphilus denitrificans K601	10481315
YP_004386244.1	CDS	Alide2_0300	NC_015422.1	327774	328667	R	KEGG: vei:Veis_2089 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase	complement(327774..328667)	Alicycliphilus denitrificans K601	10481316
YP_004386245.1	CDS	Alide2_0301	NC_015422.1	328690	330141	R	KEGG: vei:Veis_2088 betaine-aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; betaine-aldehyde dehydrogenase	complement(328690..330141)	Alicycliphilus denitrificans K601	10481317
YP_004386246.1	CDS	Alide2_0302	NC_015422.1	330336	331064	R	KEGG: rme:Rmet_4432 IclR family transcriptional regulator family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(330336..331064)	Alicycliphilus denitrificans K601	10481318
YP_004386247.1	CDS	Alide2_0303	NC_015422.1	331337	331741	D	KEGG: axy:AXYL_03188 hypothetical protein; hypothetical protein	331337..331741	Alicycliphilus denitrificans K601	10481319
YP_004386248.1	CDS	Alide2_0304	NC_015422.1	331762	332610	D	PFAM: Alpha/beta hydrolase fold-1; KEGG: axy:AXYL_03189 alpha/beta hydrolase fold family protein 10; alpha/beta hydrolase fold protein	331762..332610	Alicycliphilus denitrificans K601	10481320
YP_004386249.1	CDS	Alide2_0305	NC_015422.1	332665	333819	D	PFAM: Extracellular ligand-binding receptor; KEGG: bav:BAV0983 ABC transporter, substrate-binding protein; extracellular ligand-binding receptor	332665..333819	Alicycliphilus denitrificans K601	10481321
YP_004386250.1	CDS	Alide2_0306	NC_015422.1	333841	334710	D	PFAM: ABC transporter permease; KEGG: bav:BAV0982 ABC transporter, permease protein; ABC transporter permease	333841..334710	Alicycliphilus denitrificans K601	10481322
YP_004386251.1	CDS	Alide2_0307	NC_015422.1	334715	335713	D	PFAM: ABC transporter permease; KEGG: dma:DMR_11370 ABC transporter permease protein; ABC transporter permease	334715..335713	Alicycliphilus denitrificans K601	10481323
YP_004386252.1	CDS	Alide2_0308	NC_015422.1	335710	336489	D	PFAM: ABC transporter-like; KEGG: pth:PTH_2348 ABC-type branched-chain amino acid transport systems, ATPase component; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	335710..336489	Alicycliphilus denitrificans K601	10481324
YP_004386253.1	CDS	Alide2_0309	NC_015422.1	336476	337189	D	PFAM: ABC transporter-like; KEGG: oan:Oant_4420 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase	336476..337189	Alicycliphilus denitrificans K601	10481325
YP_004386254.1	CDS	Alide2_0310	NC_015422.1	337192	338214	D	PFAM: Amidohydrolase 2; KEGG: bbr:BB2353 hypothetical protein; amidohydrolase 2	337192..338214	Alicycliphilus denitrificans K601	10481326
YP_004386255.1	CDS	Alide2_0311	NC_015422.1	338199	338930	R	KEGG: ajs:Ajs_0229 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; GntR, C-terminal; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator	complement(338199..338930)	Alicycliphilus denitrificans K601	10481327
YP_004386256.1	CDS	Alide2_0312	NC_015422.1	339014	340216	D	KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	339014..340216	Alicycliphilus denitrificans K601	10481328
YP_004386257.1	CDS	Alide2_0313	NC_015422.1	340213	340986	D	KEGG: dia:Dtpsy_0225 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	340213..340986	Alicycliphilus denitrificans K601	10481329
YP_004386258.1	CDS	Alide2_0314	NC_015422.1	340983	342023	D	PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	340983..342023	Alicycliphilus denitrificans K601	10481330
YP_004386259.1	CDS	Alide2_0315	NC_015422.1	342121	342921	R	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_0227 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth	complement(342121..342921)	Alicycliphilus denitrificans K601	10481331
YP_004386260.1	CDS	Alide2_0316	NC_015422.1	342932	343630	D	TIGRFAM: Orotate phosphoribosyl transferase, clade 1; KEGG: dia:Dtpsy_0228 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; orotate phosphoribosyltransferase	342932..343630	Alicycliphilus denitrificans K601	10481332
YP_004386261.1	CDS	Alide2_0317	NC_015422.1	343651	344355	D	KEGG: dia:Dtpsy_0229 hypothetical protein; hypothetical protein	343651..344355	Alicycliphilus denitrificans K601	10481333
YP_004386262.1	CDS	Alide2_0318	NC_015422.1	344424	345869	R	TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Asn/Gln amidotransferase; KEGG: dac:Daci_0351 glutamyl-tRNA(Gln) amidotransferase subunit B; SMART: Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B	complement(344424..345869)	Alicycliphilus denitrificans K601	10481334
YP_004386263.1	CDS	Alide2_0319	NC_015422.1	345872	347362	R	PFAM: Amidase; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: ajs:Ajs_0237 aspartyl/glutamyl-tRNA amidotransferase subunit A; glutamyl-tRNA(Gln) amidotransferase subunit A	complement(345872..347362)	Alicycliphilus denitrificans K601	10481335
YP_004386264.1	CDS	Alide2_0320	NC_015422.1	347359	347658	R	KEGG: aav:Aave_0293 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C	complement(347359..347658)	Alicycliphilus denitrificans K601	10481336
YP_004386265.1	CDS	Alide2_0321	NC_015422.1	347864	348907	D	KEGG: dia:Dtpsy_0233 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein	347864..348907	Alicycliphilus denitrificans K601	10481337
YP_004386266.1	CDS	Alide2_0322	NC_015422.1	348937	349854	D	KEGG: ajs:Ajs_0240 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC	348937..349854	Alicycliphilus denitrificans K601	10481338
YP_004386267.1	CDS	Alide2_0323	NC_015422.1	349851	350372	D	KEGG: ajs:Ajs_0241 putative rod shape-determining MreD transmembrane protein; TIGRFAM: Cell shape-determining protein MreD; PFAM: Cell shape-determining protein MreD; rod shape-determining protein MreD	349851..350372	Alicycliphilus denitrificans K601	10481339
YP_004386268.1	CDS	Alide2_0324	NC_015422.1	350389	352332	D	TIGRFAM: Penicillin-binding protein 2; KEGG: dia:Dtpsy_0236 penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein 2	350389..352332	Alicycliphilus denitrificans K601	10481340
YP_004386269.1	CDS	Alide2_0325	NC_015422.1	352348	353259	R	TIGRFAM: Arginase, subgroup; KEGG: dia:Dtpsy_0241 arginase; PFAM: Ureohydrolase; arginase	complement(352348..353259)	Alicycliphilus denitrificans K601	10481341
YP_004386270.1	CDS	Alide2_0326	NC_015422.1	353273	354031	R	PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_0304 hypothetical protein; hypothetical protein	complement(353273..354031)	Alicycliphilus denitrificans K601	10481342
YP_004386271.1	CDS	Alide2_0327	NC_015422.1	354278	355960	R	KEGG: ajs:Ajs_0249 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; Choline dehydrogenase	complement(354278..355960)	Alicycliphilus denitrificans K601	10481343
YP_004386272.1	CDS	Alide2_0328	NC_015422.1	356227	357345	D	KEGG: ajs:Ajs_0250 hypothetical protein; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein	356227..357345	Alicycliphilus denitrificans K601	10481344
YP_004386273.1	CDS	Alide2_0329	NC_015422.1	357348	358151	D	PFAM: ABC transporter-like; KEGG: ajs:Ajs_0251 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase	357348..358151	Alicycliphilus denitrificans K601	10481345
YP_004386274.1	CDS	Alide2_0330	NC_015422.1	358151	359128	D	PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0246 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein	358151..359128	Alicycliphilus denitrificans K601	10481346
YP_004386275.1	CDS	Alide2_0331	NC_015422.1	359139	359819	D	KEGG: ajs:Ajs_0253 putative lipoprotein; manually curated; PFAM: Protein of unknown function DUF330; hypothetical protein	359139..359819	Alicycliphilus denitrificans K601	10481347
YP_004386276.1	CDS	Alide2_0333	NC_015422.1	360273	361202	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bph:Bphy_6198 LysR family transcriptional regulator; LysR family transcriptional regulator	360273..361202	Alicycliphilus denitrificans K601	10481349
YP_004386277.1	CDS	Alide2_0334	NC_015422.1	361283	363292	D	PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; KEGG: cti:RALTA_B0856 putative hydrolyase; aconitate hydratase domain-containing protein	361283..363292	Alicycliphilus denitrificans K601	10481350
YP_004386278.1	CDS	Alide2_0335	NC_015422.1	363330	364319	D	KEGG: cti:RALTA_B0858 conserved hypothetical protein; UPF0065; hypothetical protein	363330..364319	Alicycliphilus denitrificans K601	10481351
YP_004386279.1	CDS	Alide2_0336	NC_015422.1	364328	364861	D	KEGG: mmi:MMAR_5403 ribonuclease activity regulator protein RraA; TIGRFAM: Ribonuclease E inhibitor RraA; PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; regulator of ribonuclease activity A	364328..364861	Alicycliphilus denitrificans K601	10481352
YP_004386280.1	CDS	Alide2_0337	NC_015422.1	364812	365447	R	KEGG: dia:Dtpsy_0253 multiple antibiotic resistance (MarC)-related protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related; multiple antibiotic resistance (MarC)-like protein	complement(364812..365447)	Alicycliphilus denitrificans K601	10481353
YP_004386281.1	CDS	Alide2_0338	NC_015422.1	365561	366250	D	KEGG: dia:Dtpsy_0255 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; carboxymethylenebutenolidase	365561..366250	Alicycliphilus denitrificans K601	10481354
YP_004386282.1	CDS	Alide2_0339	NC_015422.1	366314	367882	R	KEGG: dia:Dtpsy_0256 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter	complement(366314..367882)	Alicycliphilus denitrificans K601	10481355
YP_004386283.1	CDS	Alide2_0340	NC_015422.1	367885	369084	R	PFAM: Secretion protein HlyD; KEGG: ajs:Ajs_0262 secretion protein HlyD family protein; secretion protein HlyD family protein	complement(367885..369084)	Alicycliphilus denitrificans K601	10481356
YP_004386284.1	CDS	Alide2_0341	NC_015422.1	369119	370540	R	KEGG: dia:Dtpsy_0258 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	complement(369119..370540)	Alicycliphilus denitrificans K601	10481357
YP_004386285.1	CDS	Alide2_0342	NC_015422.1	370570	371082	R	KEGG: ajs:Ajs_0264 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator	complement(370570..371082)	Alicycliphilus denitrificans K601	10481358
YP_004386286.1	CDS	Alide2_0343	NC_015422.1	371154	372329	R	PFAM: Mg2+ transporter protein, CorA-like; KEGG: dia:Dtpsy_0260 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein	complement(371154..372329)	Alicycliphilus denitrificans K601	10481359
YP_004386287.1	CDS	Alide2_0344	NC_015422.1	372369	373397	R	KEGG: ajs:Ajs_0266 delta-aminolevulinic acid dehydratase; PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; Porphobilinogen synthase	complement(372369..373397)	Alicycliphilus denitrificans K601	10481360
YP_004386288.1	CDS	Alide2_0345	NC_015422.1	373430	374152	D	PFAM: Biotin/lipoate A/B protein ligase; KEGG: dia:Dtpsy_0262 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase	373430..374152	Alicycliphilus denitrificans K601	10481361
YP_004386289.1	CDS	Alide2_0346	NC_015422.1	374300	374728	D	PFAM: Uncharacterised protein family UPF0093; KEGG: dia:Dtpsy_0263 hypothetical protein; hypothetical protein	374300..374728	Alicycliphilus denitrificans K601	10481362
YP_004386290.1	CDS	Alide2_0347	NC_015422.1	374754	375851	D	PFAM: VanZ-like; KEGG: ajs:Ajs_0269 VanZ family protein; VanZ family protein	374754..375851	Alicycliphilus denitrificans K601	10481363
YP_004386291.1	CDS	Alide2_0348	NC_015422.1	375861	376202	D	KEGG: dia:Dtpsy_0265 ferredoxin-like protein; ferredoxin-like protein	375861..376202	Alicycliphilus denitrificans K601	10481364
YP_004386292.1	CDS	Alide2_0349	NC_015422.1	376286	376921	D	KEGG: dia:Dtpsy_0266 putative transmembrane protein; putative transmembrane protein	376286..376921	Alicycliphilus denitrificans K601	10481365
YP_004386293.1	CDS	Alide2_0350	NC_015422.1	377023	378186	D	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: ajs:Ajs_0272 penicillin-binding protein 6; SMART: Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; beta-lactamase	377023..378186	Alicycliphilus denitrificans K601	10481366
YP_004386294.1	CDS	Alide2_0351	NC_015422.1	378288	378665	D	KEGG: dia:Dtpsy_0268 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacteria; PFAM: Ribosomal protein S12/S23; 30S ribosomal protein S12	378288..378665	Alicycliphilus denitrificans K601	10481367
YP_004386295.1	CDS	Alide2_0352	NC_015422.1	378829	379302	D	KEGG: xtr:100494042 30S ribosomal protein S7-like; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7; 30S ribosomal protein S7	378829..379302	Alicycliphilus denitrificans K601	10481368
YP_004386296.1	CDS	Alide2_0353	NC_015422.1	379389	381497	D	TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: ajs:Ajs_0275 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; translation elongation factor G	379389..381497	Alicycliphilus denitrificans K601	10481369
YP_004386297.1	CDS	Alide2_0354	NC_015422.1	381731	382921	D	KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation elongation factor Tu	381731..382921	Alicycliphilus denitrificans K601	10481370
YP_004386298.1	CDS	Alide2_0355	NC_015422.1	382949	383260	D	TIGRFAM: Ribosomal protein S10 subgroup; HAMAP: Ribosomal protein S10 subgroup; KEGG: vei:Veis_1263 30S ribosomal protein S10; PFAM: Ribosomal protein S10; 30S ribosomal protein S10	382949..383260	Alicycliphilus denitrificans K601	10481371
YP_004386299.1	CDS	Alide2_0356	NC_015422.1	383477	384151	D	KEGG: dia:Dtpsy_0273 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; 50S ribosomal protein L3	383477..384151	Alicycliphilus denitrificans K601	10481372
YP_004386300.1	CDS	Alide2_0357	NC_015422.1	384151	384771	D	PFAM: Ribosomal protein L4/L1e; KEGG: dia:Dtpsy_0274 50S ribosomal protein L4; 50S ribosomal protein L4/L1e	384151..384771	Alicycliphilus denitrificans K601	10481373
YP_004386301.1	CDS	Alide2_0358	NC_015422.1	384768	385082	D	PFAM: Ribosomal protein L25/L23; KEGG: dia:Dtpsy_0275 50S ribosomal protein L23; 50S ribosomal protein L25/L23	384768..385082	Alicycliphilus denitrificans K601	10481374
YP_004386302.1	CDS	Alide2_0359	NC_015422.1	385085	385909	D	KEGG: dia:Dtpsy_0276 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2, C-terminal; Ribosomal Proteins L2, RNA binding domain; 50S ribosomal protein L2	385085..385909	Alicycliphilus denitrificans K601	10481375
YP_004386303.1	CDS	Alide2_0360	NC_015422.1	385920	386195	D	KEGG: xtr:100486557 30S ribosomal protein S19-like; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15; 30S ribosomal protein S19	385920..386195	Alicycliphilus denitrificans K601	10481376
YP_004386304.1	CDS	Alide2_0361	NC_015422.1	386205	386537	D	KEGG: dac:Daci_0396 50S ribosomal protein L22; TIGRFAM: Ribosomal protein L22, bacterial-type; PFAM: Ribosomal protein L22/L17; 50S ribosomal protein L22	386205..386537	Alicycliphilus denitrificans K601	10481377
YP_004386305.1	CDS	Alide2_0362	NC_015422.1	386555	387427	D	TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; Ribosomal protein S3, N-terminal; K Homology, type 2; KEGG: aav:Aave_0344 30S ribosomal protein S3; SMART: K Homology; 30S ribosomal protein S3	386555..387427	Alicycliphilus denitrificans K601	10481378
YP_004386306.1	CDS	Alide2_0363	NC_015422.1	387430	387846	D	KEGG: dia:Dtpsy_0280 50S ribosomal protein L16; TIGRFAM: Ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16	387430..387846	Alicycliphilus denitrificans K601	10481379
YP_004386307.1	CDS	Alide2_0364	NC_015422.1	387858	388055	D	KEGG: dia:Dtpsy_0281 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; 50S ribosomal protein L29	387858..388055	Alicycliphilus denitrificans K601	10481380
YP_004386308.1	CDS	Alide2_0365	NC_015422.1	388069	388338	D	KEGG: dia:Dtpsy_0282 30S ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; 30S ribosomal protein S17	388069..388338	Alicycliphilus denitrificans K601	10481381
YP_004386309.1	CDS	Alide2_0366	NC_015422.1	388418	388924	D	PFAM: Redoxin; KEGG: ajs:Ajs_0288 redoxin domain-containing protein; Redoxin domain-containing protein	388418..388924	Alicycliphilus denitrificans K601	10481382
YP_004386310.1	CDS	Alide2_0367	NC_015422.1	389030	389578	R	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_0284 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	complement(389030..389578)	Alicycliphilus denitrificans K601	10481383
YP_004386311.1	CDS	Alide2_0368	NC_015422.1	389593	390321	R	KEGG: dia:Dtpsy_0285 cytochrome b561; cytochrome b561	complement(389593..390321)	Alicycliphilus denitrificans K601	10481384
YP_004386312.1	CDS	Alide2_0369	NC_015422.1	390570	391073	R	PFAM: Redoxin; KEGG: dia:Dtpsy_0287 redoxin domain protein; Redoxin domain-containing protein	complement(390570..391073)	Alicycliphilus denitrificans K601	10481385
YP_004386313.1	CDS	Alide2_0370	NC_015422.1	391146	391796	D	KEGG: dia:Dtpsy_0288 hypothetical protein; hypothetical protein	391146..391796	Alicycliphilus denitrificans K601	10481386
YP_004386314.1	CDS	Alide2_0371	NC_015422.1	391818	392228	D	PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: ajs:Ajs_0295 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component	391818..392228	Alicycliphilus denitrificans K601	10481387
YP_004386315.1	CDS	Alide2_0372	NC_015422.1	392225	392494	D	KEGG: dia:Dtpsy_0291 phosphocarrier, HPr family; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr	392225..392494	Alicycliphilus denitrificans K601	10481388
YP_004386316.1	CDS	Alide2_0373	NC_015422.1	392513	394279	D	TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; KEGG: ajs:Ajs_0297 phosphoenolpyruvate--protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile domain; phosphoenolpyruvate-protein phosphotransferase	392513..394279	Alicycliphilus denitrificans K601	10481389
YP_004386317.1	CDS	Alide2_0374	NC_015422.1	394346	395326	R	KEGG: dia:Dtpsy_0293 lipoyl synthase; PFAM: Radical SAM; TIGRFAM: Lipoate synthase; HAMAP: Lipoate synthase; SMART: Elongator protein 3/MiaB/NifB; lipoyl synthase	complement(394346..395326)	Alicycliphilus denitrificans K601	10481390
YP_004386318.1	CDS	Alide2_0375	NC_015422.1	395344	396036	R	TIGRFAM: Octanoyltransferase; KEGG: ajs:Ajs_0299 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; lipoate-protein ligase B	complement(395344..396036)	Alicycliphilus denitrificans K601	10481391
YP_004386319.1	CDS	Alide2_0376	NC_015422.1	396048	396344	R	PFAM: Protein of unknown function DUF493; KEGG: dia:Dtpsy_0295 protein of unknown function DUF493; hypothetical protein	complement(396048..396344)	Alicycliphilus denitrificans K601	10481392
YP_004386320.1	CDS	Alide2_0377	NC_015422.1	396628	397020	D	PFAM: ATPase, F0 complex, subunit I; KEGG: aav:Aave_0365 putative ATP synthase protein I; ATP synthase I chain	396628..397020	Alicycliphilus denitrificans K601	10481393
YP_004386321.1	CDS	Alide2_0378	NC_015422.1	397043	397906	D	KEGG: dia:Dtpsy_0297 F0F1 ATP synthase subunit A; TIGRFAM: ATPase, F0 complex, subunit A; PFAM: ATPase, F0 complex, subunit A; ATP synthase F0 subunit A	397043..397906	Alicycliphilus denitrificans K601	10481394
YP_004386322.1	CDS	Alide2_0379	NC_015422.1	397958	398206	D	TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: dac:Daci_0415 F0F1 ATP synthase subunit C; PFAM: ATPase, F0/V0 complex, subunit C; ATP synthase subunit c	397958..398206	Alicycliphilus denitrificans K601	10481395
YP_004386323.1	CDS	Alide2_0380	NC_015422.1	398245	398715	D	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; KEGG: dia:Dtpsy_0299 F0F1 ATP synthase subunit B; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; ATP synthase subunit b	398245..398715	Alicycliphilus denitrificans K601	10481396
YP_004386324.1	CDS	Alide2_0381	NC_015422.1	398734	399276	D	KEGG: dia:Dtpsy_0300 F0F1 ATP synthase subunit delta; TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; ATP synthase F1 subunit delta	398734..399276	Alicycliphilus denitrificans K601	10481397
YP_004386325.1	CDS	Alide2_0382	NC_015422.1	399322	400881	D	KEGG: aav:Aave_0370 F0F1 ATP synthase subunit alpha; TIGRFAM: ATPase, F1 complex, alpha subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATP synthase F1 subunit alpha	399322..400881	Alicycliphilus denitrificans K601	10481398
YP_004386326.1	CDS	Alide2_0383	NC_015422.1	400900	401766	D	KEGG: dia:Dtpsy_0302 F0F1 ATP synthase subunit gamma; TIGRFAM: ATPase, F1 complex, gamma subunit; PFAM: ATPase, F1 complex, gamma subunit; ATP synthase F1 subunit gamma	400900..401766	Alicycliphilus denitrificans K601	10481399
YP_004386327.1	CDS	Alide2_0384	NC_015422.1	401795	403204	D	TIGRFAM: ATPase, F1 complex, beta subunit; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; KEGG: dia:Dtpsy_0303 F0F1 ATP synthase subunit beta; SMART: ATPase, AAA+ type, core; ATP synthase F1 subunit beta	401795..403204	Alicycliphilus denitrificans K601	10481400
YP_004386328.1	CDS	Alide2_0385	NC_015422.1	403279	403695	D	KEGG: dia:Dtpsy_0304 F0F1 ATP synthase subunit epsilon; TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal; ATP synthase F1 subunit epsilon	403279..403695	Alicycliphilus denitrificans K601	10481401
YP_004386329.1	CDS	Alide2_0386	NC_015422.1	403901	404329	D	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	403901..404329	Alicycliphilus denitrificans K601	10481402
YP_004386330.1	CDS	Alide2_0387	NC_015422.1	404326	404658	D	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	404326..404658	Alicycliphilus denitrificans K601	10481403
YP_004386331.1	CDS	Alide2_0388	NC_015422.1	404741	406255	D	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	404741..406255	Alicycliphilus denitrificans K601	10481404
YP_004386332.1	CDS	Alide2_0392	NC_015422.1	409186	409719	R	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0314 hypothetical protein; hypothetical protein	complement(409186..409719)	Alicycliphilus denitrificans K601	10481408
YP_004386333.1	CDS	Alide2_0393	NC_015422.1	409734	410621	R	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_0315 hypothetical protein; hypothetical protein	complement(409734..410621)	Alicycliphilus denitrificans K601	10481409
YP_004386334.1	CDS	Alide2_0394	NC_015422.1	410625	411230	R	PFAM: LemA; KEGG: aav:Aave_0381 LemA family protein; LemA family protein	complement(410625..411230)	Alicycliphilus denitrificans K601	10481410
YP_004386335.1	CDS	Alide2_0395	NC_015422.1	411351	411818	D	KEGG: dia:Dtpsy_0312 hypothetical protein; hypothetical protein	411351..411818	Alicycliphilus denitrificans K601	10481411
YP_004386336.1	CDS	Alide2_0396	NC_015422.1	411864	412400	D	PFAM: Protein of unknown function DUF2944; KEGG: ajs:Ajs_0319 hypothetical protein; hypothetical protein	411864..412400	Alicycliphilus denitrificans K601	10481412
YP_004386337.1	CDS	Alide2_0397	NC_015422.1	412556	413392	R	PFAM: Cytochrome c, class I; KEGG: aav:Aave_0385 cytochrome c, class I; cytochrome c class I	complement(412556..413392)	Alicycliphilus denitrificans K601	10481413
YP_004386338.1	CDS	Alide2_0398	NC_015422.1	413522	414967	R	KEGG: dia:Dtpsy_0316 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	complement(413522..414967)	Alicycliphilus denitrificans K601	10481414
YP_004386339.1	CDS	Alide2_0399	NC_015422.1	414992	418147	R	KEGG: dia:Dtpsy_0317 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter	complement(414992..418147)	Alicycliphilus denitrificans K601	10481415
YP_004386340.1	CDS	Alide2_0400	NC_015422.1	418166	419446	R	KEGG: dia:Dtpsy_0318 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	complement(418166..419446)	Alicycliphilus denitrificans K601	10481416
YP_004386341.1	CDS	Alide2_0401	NC_015422.1	419638	420258	D	PFAM: Transcription regulator MAATS, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0319 transcriptional regulator, TetR family; TetR family transcriptional regulator	419638..420258	Alicycliphilus denitrificans K601	10481417
YP_004386342.1	CDS	Alide2_0402	NC_015422.1	420914	422104	D	KEGG: ajs:Ajs_0276 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation elongation factor Tu	420914..422104	Alicycliphilus denitrificans K601	10481422
YP_004386343.1	CDS	Alide2_0403	NC_015422.1	422281	422664	D	KEGG: ajs:Ajs_3903 preprotein translocase subunit SecE; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein SecE/Sec61-gamma protein; preprotein translocase subunit SecE	422281..422664	Alicycliphilus denitrificans K601	10481424
YP_004386344.1	CDS	Alide2_0404	NC_015422.1	422664	423254	D	TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: dia:Dtpsy_3251 NusG antitermination factor; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; NusG antitermination factor	422664..423254	Alicycliphilus denitrificans K601	10481425
YP_004386345.1	CDS	Alide2_0405	NC_015422.1	423385	423816	D	TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, N-terminal domain; Ribosomal protein L11, C-terminal domain; KEGG: aav:Aave_4535 50S ribosomal protein L11; SMART: Ribosomal protein L11; 50S ribosomal protein L11	423385..423816	Alicycliphilus denitrificans K601	10481426
YP_004386346.1	CDS	Alide2_0406	NC_015422.1	423817	424512	D	KEGG: dia:Dtpsy_3249 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1; 50S ribosomal protein L1	423817..424512	Alicycliphilus denitrificans K601	10481427
YP_004386347.1	CDS	Alide2_0407	NC_015422.1	424745	425251	D	KEGG: aav:Aave_4533 50S ribosomal protein L10; HAMAP: Ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; 50S ribosomal protein L10	424745..425251	Alicycliphilus denitrificans K601	10481428
YP_004386348.1	CDS	Alide2_0408	NC_015422.1	425306	425686	D	KEGG: dia:Dtpsy_3247 50S ribosomal protein L7/L12; TIGRFAM: Ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; 50S ribosomal protein L7/L12	425306..425686	Alicycliphilus denitrificans K601	10481429
YP_004386349.1	CDS	Alide2_0409	NC_015422.1	425961	430085	D	KEGG: aav:Aave_4531 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 7; RNA polymerase, beta subunit, protrusion; DNA-directed RNA polymerase, beta subunit, external 1 domain; DNA-directed RNA polymerase subunit beta	425961..430085	Alicycliphilus denitrificans K601	10481430
YP_004386350.1	CDS	Alide2_0410	NC_015422.1	430106	434335	D	TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 4; KEGG: dia:Dtpsy_3245 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase, N-terminal; DNA-directed RNA polymerase subunit beta'	430106..434335	Alicycliphilus denitrificans K601	10481431
YP_004386351.1	CDS	Alide2_0411	NC_015422.1	434455	435021	D	PFAM: LemA; KEGG: dia:Dtpsy_3244 hypothetical protein; LemA family protein	434455..435021	Alicycliphilus denitrificans K601	10481432
YP_004386352.1	CDS	Alide2_0412	NC_015422.1	435018	436385	D	KEGG: dia:Dtpsy_3243 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; sun protein	435018..436385	Alicycliphilus denitrificans K601	10481433
YP_004386353.1	CDS	Alide2_0413	NC_015422.1	436429	437010	D	KEGG: ajs:Ajs_3893 hypothetical protein; hypothetical protein	436429..437010	Alicycliphilus denitrificans K601	10481434
YP_004386354.1	CDS	Alide2_0414	NC_015422.1	437007	439295	D	KEGG: ajs:Ajs_3892 multi-sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; HAMP linker domain; multi-sensor signal transduction histidine kinase	437007..439295	Alicycliphilus denitrificans K601	10481435
YP_004386355.1	CDS	Alide2_0415	NC_015422.1	439335	440030	D	KEGG: dia:Dtpsy_3240 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; two component Fis family transcriptional regulator	439335..440030	Alicycliphilus denitrificans K601	10481436
YP_004386356.1	CDS	Alide2_0416	NC_015422.1	440383	440643	R	TIGRFAM: Phage head-tail joining protein; KEGG: aav:Aave_1622 phage head-tail adaptor, putative; phage head-tail adaptor	complement(440383..440643)	Alicycliphilus denitrificans K601	10481438
YP_004386357.1	CDS	Alide2_0417	NC_015422.1	440683	441516	R	PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit	complement(440683..441516)	Alicycliphilus denitrificans K601	10481439
YP_004386358.1	CDS	Alide2_0418	NC_015422.1	441549	441815	R	PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(441549..441815)	Alicycliphilus denitrificans K601	10481440
YP_004386359.1	CDS	Alide2_0419	NC_015422.1	441958	442233	R	TIGRFAM: Bacteriophage HK022, Gp6; KEGG: bcm:Bcenmc03_1290 phage protein DNA packaging protein; phage DNA packaging-like protein	complement(441958..442233)	Alicycliphilus denitrificans K601	10481441
YP_004386360.1	CDS	Alide2_0422	NC_015422.1	444078	444341	R	hypothetical protein	complement(444078..444341)	Alicycliphilus denitrificans K601	10481444
YP_004386361.1	CDS	Alide2_0423	NC_015422.1	444338	444511	R	hypothetical protein	complement(444338..444511)	Alicycliphilus denitrificans K601	10481445
YP_004386362.1	CDS	Alide2_0424	NC_015422.1	444508	444693	R	hypothetical protein	complement(444508..444693)	Alicycliphilus denitrificans K601	10481446
YP_004386363.1	CDS	Alide2_0425	NC_015422.1	444693	445772	R	KEGG: pol:Bpro_0958 putative major phage head protein/prohead proteinase; hypothetical protein	complement(444693..445772)	Alicycliphilus denitrificans K601	10481447
YP_004386364.1	CDS	Alide2_0426	NC_015422.1	445865	446272	R	hypothetical protein	complement(445865..446272)	Alicycliphilus denitrificans K601	10481448
YP_004386365.1	CDS	Alide2_0427	NC_015422.1	446259	446603	R	KEGG: pol:Bpro_2970 hypothetical protein; hypothetical protein	complement(446259..446603)	Alicycliphilus denitrificans K601	10481449
YP_004386366.1	CDS	Alide2_0428	NC_015422.1	446600	447796	R	KEGG: pol:Bpro_2969 hypothetical protein; hypothetical protein	complement(446600..447796)	Alicycliphilus denitrificans K601	10481450
YP_004386367.1	CDS	Alide2_0429	NC_015422.1	447793	448257	R	KEGG: pol:Bpro_2968 hypothetical protein; hypothetical protein	complement(447793..448257)	Alicycliphilus denitrificans K601	10481451
YP_004386368.1	CDS	Alide2_0430	NC_015422.1	448268	448468	R	KEGG: drt:Dret_1611 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory; Prophage CP4-57 regulatory protein	complement(448268..448468)	Alicycliphilus denitrificans K601	10481452
YP_004386369.1	CDS	Alide2_0431	NC_015422.1	448949	449143	R	hypothetical protein	complement(448949..449143)	Alicycliphilus denitrificans K601	10481453
YP_004386370.1	CDS	Alide2_0432	NC_015422.1	449100	449366	R	hypothetical protein	complement(449100..449366)	Alicycliphilus denitrificans K601	10481454
YP_004386371.1	CDS	Alide2_0433	NC_015422.1	449467	450690	R	PFAM: Integrase, catalytic core, phage; KEGG: dia:Dtpsy_3164 integrase family protein; integrase family protein	complement(449467..450690)	Alicycliphilus denitrificans K601	10481455
YP_004386372.1	CDS	Alide2_0437	NC_015422.1	452646	453776	D	KEGG: pol:Bpro_2745 putative transposase; putative transposase	452646..453776	Alicycliphilus denitrificans K601	10481458
YP_004386373.1	CDS	Alide2_0438	NC_015422.1	453742	454035	D	KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein	453742..454035	Alicycliphilus denitrificans K601	10481459
YP_004386374.1	CDS	Alide2_0439	NC_015422.1	454753	455763	R	KEGG: dia:Dtpsy_0401 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucuronate 5'-epimerase	complement(454753..455763)	Alicycliphilus denitrificans K601	10481460
YP_004386375.1	CDS	Alide2_0440	NC_015422.1	455760	457277	R	KEGG: dia:Dtpsy_0402 glycosyltransferase; glycosyltransferase	complement(455760..457277)	Alicycliphilus denitrificans K601	10481461
YP_004386376.1	CDS	Alide2_0441	NC_015422.1	457381	458412	D	PFAM: Glycosyl transferase, family 2; KEGG: ajs:Ajs_0411 glycosyl transferase family protein; family 2 glycosyl transferase	457381..458412	Alicycliphilus denitrificans K601	10481462
YP_004386377.1	CDS	Alide2_0442	NC_015422.1	458409	459332	D	KEGG: ajs:Ajs_0412 hypothetical protein; hypothetical protein	458409..459332	Alicycliphilus denitrificans K601	10481463
YP_004386378.1	CDS	Alide2_0443	NC_015422.1	459329	460165	R	PFAM: Tetrapyrrole methylase; manually curated; TIGRFAM: Uncharacterised protein family UPF0011; KEGG: dia:Dtpsy_0405 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; HAMAP: Ribosomal RNA small subunit methyltransferase I; ribosomal RNA small subunit methyltransferase I	complement(459329..460165)	Alicycliphilus denitrificans K601	10481464
YP_004386379.1	CDS	Alide2_0444	NC_015422.1	460246	460644	D	TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: dia:Dtpsy_0406 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; hypothetical protein	460246..460644	Alicycliphilus denitrificans K601	10481465
YP_004386380.1	CDS	Alide2_0445	NC_015422.1	460705	461307	D	PFAM: Sugar isomerase (SIS); KEGG: dia:Dtpsy_0407 phosphoheptose isomerase; sugar isomerase (SIS)	460705..461307	Alicycliphilus denitrificans K601	10481466
YP_004386381.1	CDS	Alide2_0446	NC_015422.1	461304	461969	D	PFAM: Transport-associated; KEGG: ajs:Ajs_0416 transport-associated; transport-associated protein	461304..461969	Alicycliphilus denitrificans K601	10481467
YP_004386382.1	CDS	Alide2_0447	NC_015422.1	461998	462930	R	KEGG: dia:Dtpsy_0409 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase	complement(461998..462930)	Alicycliphilus denitrificans K601	10481468
YP_004386383.1	CDS	Alide2_0448	NC_015422.1	463011	464147	R	KEGG: ajs:Ajs_0418 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein	complement(463011..464147)	Alicycliphilus denitrificans K601	10481469
YP_004386384.1	CDS	Alide2_0449	NC_015422.1	464173	464802	R	KEGG: dia:Dtpsy_0411 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; putative Crp/Fnr family transcriptional regulator	complement(464173..464802)	Alicycliphilus denitrificans K601	10481470
YP_004386385.1	CDS	Alide2_0450	NC_015422.1	464867	465910	R	KEGG: aav:Aave_0637 twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein	complement(464867..465910)	Alicycliphilus denitrificans K601	10481471
YP_004386386.1	CDS	Alide2_0451	NC_015422.1	465950	466672	D	KEGG: dac:Daci_1069 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein	465950..466672	Alicycliphilus denitrificans K601	10481472
YP_004386387.1	CDS	Alide2_0452	NC_015422.1	466713	467843	D	PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: dia:Dtpsy_0414 aminotransferase class V; class V aminotransferase	466713..467843	Alicycliphilus denitrificans K601	10481473
YP_004386388.1	CDS	Alide2_0453	NC_015422.1	467904	468326	R	manually curated; KEGG: aav:Aave_0642 hypothetical protein; hypothetical protein	complement(467904..468326)	Alicycliphilus denitrificans K601	10481474
YP_004386389.1	CDS	Alide2_0454	NC_015422.1	468511	469812	D	PFAM: Protein of unknown function DUF445, transmembrane; KEGG: ajs:Ajs_0423 hypothetical protein; hypothetical protein	468511..469812	Alicycliphilus denitrificans K601	10481475
YP_004386390.1	CDS	Alide2_0455	NC_015422.1	469870	471363	R	KEGG: dia:Dtpsy_0417 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase (cytochrome)	complement(469870..471363)	Alicycliphilus denitrificans K601	10481476
YP_004386391.1	CDS	Alide2_0456	NC_015422.1	471430	472326	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0418 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(471430..472326)	Alicycliphilus denitrificans K601	10481477
YP_004386392.1	CDS	Alide2_0457	NC_015422.1	472326	473174	R	TIGRFAM: Formyltetrahydrofolate deformylase; KEGG: xtr:100487869 formyltetrahydrofolate deformylase-like; PFAM: Formyl transferase, N-terminal; Amino acid-binding ACT; formyltetrahydrofolate deformylase	complement(472326..473174)	Alicycliphilus denitrificans K601	10481478
YP_004386393.1	CDS	Alide2_0458	NC_015422.1	473220	475886	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; PAS fold-3; PAS fold-4; KEGG: ctt:CtCNB1_4372 diguanylate cyclase/phosphodiesterase with; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	473220..475886	Alicycliphilus denitrificans K601	10481479
YP_004386394.1	CDS	Alide2_0459	NC_015422.1	475887	476747	R	PFAM: Domain of unknown function DUF399; KEGG: dia:Dtpsy_0421 protein of unknown function DUF399; hypothetical protein	complement(475887..476747)	Alicycliphilus denitrificans K601	10481480
YP_004386395.1	CDS	Alide2_0460	NC_015422.1	477014	479449	D	TIGRFAM: Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; KEGG: ajs:Ajs_0431 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	477014..479449	Alicycliphilus denitrificans K601	10481481
YP_004386396.1	CDS	Alide2_0461	NC_015422.1	479628	481544	D	KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; HAMP linker domain; GAF; SMART: ATPase-like, ATP-binding domain; HAMP linker domain; multi-sensor signal transduction histidine kinase	479628..481544	Alicycliphilus denitrificans K601	10481482
YP_004386397.1	CDS	Alide2_0462	NC_015422.1	481541	482215	D	KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator	481541..482215	Alicycliphilus denitrificans K601	10481483
YP_004386398.1	CDS	Alide2_0463	NC_015422.1	482444	483739	D	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_0434 major facilitator superfamily transporter; major facilitator superfamily protein	482444..483739	Alicycliphilus denitrificans K601	10481484
YP_004386399.1	CDS	Alide2_0464	NC_015422.1	483758	485203	D	KEGG: xtr:100497879 nitrite extrusion protein 1-like; TIGRFAM: Nitrate transporter; PFAM: Major facilitator superfamily MFS-1; nitrite transporter	483758..485203	Alicycliphilus denitrificans K601	10481485
YP_004386400.1	CDS	Alide2_0465	NC_015422.1	485240	489034	D	SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Nitrate reductase, alpha subunit; KEGG: ajs:Ajs_0436 respiratory nitrate reductase alpha subunit apoprotein; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; nitrate reductase subunit alpha	485240..489034	Alicycliphilus denitrificans K601	10481486
YP_004386401.1	CDS	Alide2_0466	NC_015422.1	489053	490576	D	KEGG: dia:Dtpsy_0428 nitrate reductase, beta subunit; TIGRFAM: Nitrate reductase, beta subunit; nitrate reductase subunit beta	489053..490576	Alicycliphilus denitrificans K601	10481487
YP_004386402.1	CDS	Alide2_0467	NC_015422.1	490588	491289	D	TIGRFAM: Nitrate reductase chaperone, NarJ; KEGG: dia:Dtpsy_0429 nitrate reductase molybdenum cofactor assembly chaperone; PFAM: DMSO/Nitrate reductase chaperone; nitrate reductase molybdenum cofactor assembly chaperone	490588..491289	Alicycliphilus denitrificans K601	10481488
YP_004386403.1	CDS	Alide2_0468	NC_015422.1	491286	492014	D	TIGRFAM: Nitrate reductase, gamma subunit; KEGG: dia:Dtpsy_0430 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma	491286..492014	Alicycliphilus denitrificans K601	10481489
YP_004386404.1	CDS	Alide2_0469	NC_015422.1	492142	492969	D	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_0431 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	492142..492969	Alicycliphilus denitrificans K601	10481490
YP_004386405.1	CDS	Alide2_0470	NC_015422.1	493004	493681	D	PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_0432 carbonate dehydratase; SMART: Carbonic anhydrase; carbonate dehydratase	493004..493681	Alicycliphilus denitrificans K601	10481491
YP_004386406.1	CDS	Alide2_0471	NC_015422.1	493681	494331	D	PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0434 nitroreductase; nitroreductase	493681..494331	Alicycliphilus denitrificans K601	10481492
YP_004386407.1	CDS	Alide2_0472	NC_015422.1	494328	494747	D	KEGG: dia:Dtpsy_0435 hypothetical protein; hypothetical protein	494328..494747	Alicycliphilus denitrificans K601	10481493
YP_004386408.1	CDS	Alide2_0473	NC_015422.1	494801	495349	D	KEGG: dia:Dtpsy_0436 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein	494801..495349	Alicycliphilus denitrificans K601	10481494
YP_004386409.1	CDS	Alide2_0474	NC_015422.1	495539	495826	R	PFAM: Protein of unknown function DUF3567; KEGG: ajs:Ajs_0446 hypothetical protein; hypothetical protein	complement(495539..495826)	Alicycliphilus denitrificans K601	10481495
YP_004386410.1	CDS	Alide2_0475	NC_015422.1	495960	497111	R	KEGG: ajs:Ajs_0447 hypothetical protein; hypothetical protein	complement(495960..497111)	Alicycliphilus denitrificans K601	10481496
YP_004386411.1	CDS	Alide2_0476	NC_015422.1	497293	498282	D	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_0449 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase	497293..498282	Alicycliphilus denitrificans K601	10481497
YP_004386412.1	CDS	Alide2_0477	NC_015422.1	498439	500643	D	KEGG: cph:Cpha266_1840 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; hypothetical protein	498439..500643	Alicycliphilus denitrificans K601	10481498
YP_004386413.1	CDS	Alide2_0478	NC_015422.1	500704	502779	R	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding domain; Molybdopterin oxidoreductase, Fe4S4 domain; KEGG: ajs:Ajs_0451 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Trimethylamine-N-oxide reductase (cytochrome c)	complement(500704..502779)	Alicycliphilus denitrificans K601	10481499
YP_004386414.1	CDS	Alide2_0479	NC_015422.1	502897	503928	R	KEGG: vei:Veis_1579 hypothetical protein; hypothetical protein	complement(502897..503928)	Alicycliphilus denitrificans K601	10481500
YP_004386415.1	CDS	Alide2_0480	NC_015422.1	503969	504877	R	KEGG: vei:Veis_1580 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; Citryl-CoA lyase	complement(503969..504877)	Alicycliphilus denitrificans K601	10481501
YP_004386416.1	CDS	Alide2_0481	NC_015422.1	504893	506125	R	KEGG: vei:Veis_1581 formyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(504893..506125)	Alicycliphilus denitrificans K601	10481502
YP_004386417.1	CDS	Alide2_0482	NC_015422.1	506122	506625	R	KEGG: cti:RALTA_B1741 hypothetical protein; hypothetical protein	complement(506122..506625)	Alicycliphilus denitrificans K601	10481503
YP_004386418.1	CDS	Alide2_0483	NC_015422.1	506622	507872	R	KEGG: cti:RALTA_B1742 putative acyl CoA dehydrogenase oxidoreductase protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	complement(506622..507872)	Alicycliphilus denitrificans K601	10481504
YP_004386419.1	CDS	Alide2_0484	NC_015422.1	507877	508380	R	PFAM: MaoC-like dehydratase; KEGG: cti:RALTA_B1743 hypothetical protein; MaoC domain-containing protein dehydratase	complement(507877..508380)	Alicycliphilus denitrificans K601	10481505
YP_004386420.1	CDS	Alide2_0485	NC_015422.1	508377	509756	R	PFAM: MmgE/PrpD; KEGG: vei:Veis_1585 MmgE/PrpD family protein; MmgE/PrpD family protein	complement(508377..509756)	Alicycliphilus denitrificans K601	10481506
YP_004386421.1	CDS	Alide2_0486	NC_015422.1	509962	510837	D	KEGG: xau:Xaut_1974 citryl-CoA lyase; PFAM: Aldehyde-lyase domain; Citryl-CoA lyase	509962..510837	Alicycliphilus denitrificans K601	10481507
YP_004386422.1	CDS	Alide2_0487	NC_015422.1	510844	511602	D	PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: rcu:RCOM_0002820 Transcriptional regulator kdgR, putative; IclR family transcriptional regulator	510844..511602	Alicycliphilus denitrificans K601	10481508
YP_004386423.1	CDS	Alide2_0488	NC_015422.1	511704	512909	D	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0444 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase	511704..512909	Alicycliphilus denitrificans K601	10481509
YP_004386424.1	CDS	Alide2_0489	NC_015422.1	512978	513235	D	PFAM: Acyl-CoA-binding protein, ACBP; KEGG: dia:Dtpsy_0446 acyl-coA-binding protein ACBP; acyl-coA-binding protein ACBP	512978..513235	Alicycliphilus denitrificans K601	10481510
YP_004386425.1	CDS	Alide2_0490	NC_015422.1	513238	514341	R	PFAM: aminopeptidase; KEGG: dia:Dtpsy_0447 putative zinc protease protein; aminopeptidase	complement(513238..514341)	Alicycliphilus denitrificans K601	10481511
YP_004386426.1	CDS	Alide2_0491	NC_015422.1	514348	515007	D	KEGG: ajs:Ajs_0457 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase; DNA-3-methyladenine glycosylase I	514348..515007	Alicycliphilus denitrificans K601	10481512
YP_004386427.1	CDS	Alide2_0492	NC_015422.1	515058	515219	R	KEGG: dia:Dtpsy_0450 hypothetical protein; hypothetical protein	complement(515058..515219)	Alicycliphilus denitrificans K601	10481513
YP_004386428.1	CDS	Alide2_0493	NC_015422.1	515500	516798	D	KEGG: ajs:Ajs_0460 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; Cyclopropane-fatty-acyl-phospholipid synthase	515500..516798	Alicycliphilus denitrificans K601	10481514
YP_004386429.1	CDS	Alide2_0494	NC_015422.1	516820	517140	D	PFAM: Protein of unknown function DUF1840; KEGG: dia:Dtpsy_0452 hypothetical protein; hypothetical protein	516820..517140	Alicycliphilus denitrificans K601	10481515
YP_004386430.1	CDS	Alide2_0495	NC_015422.1	517163	518179	R	KEGG: ajs:Ajs_0462 hypothetical protein; hypothetical protein	complement(517163..518179)	Alicycliphilus denitrificans K601	10481516
YP_004386431.1	CDS	Alide2_0496	NC_015422.1	518322	519311	R	KEGG: vap:Vapar_5015 hypothetical protein; hypothetical protein	complement(518322..519311)	Alicycliphilus denitrificans K601	10481517
YP_004386432.1	CDS	Alide2_0497	NC_015422.1	519438	520685	R	PFAM: AMP-dependent synthetase/ligase; KEGG: dia:Dtpsy_0455 putative phenylacetate-CoA ligase; AMP-dependent synthetase and ligase	complement(519438..520685)	Alicycliphilus denitrificans K601	10481518
YP_004386433.1	CDS	Alide2_0498	NC_015422.1	520776	521618	R	KEGG: ctt:CtCNB1_4329 high-affinity branched-chain amino acid transport ATP-binding protein LivF; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(520776..521618)	Alicycliphilus denitrificans K601	10481519
YP_004386434.1	CDS	Alide2_0499	NC_015422.1	521758	523071	R	KEGG: dac:Daci_1155 hypothetical protein; hypothetical protein	complement(521758..523071)	Alicycliphilus denitrificans K601	10481520
YP_004386435.1	CDS	Alide2_0500	NC_015422.1	523130	524194	R	PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4327 membrane protein; ABC transporter permease	complement(523130..524194)	Alicycliphilus denitrificans K601	10481521
YP_004386436.1	CDS	Alide2_0501	NC_015422.1	524216	525145	R	PFAM: ABC transporter permease; KEGG: ctt:CtCNB1_4326 high-affinity branched-chain amino acidtransport system permease protein LivH; ABC transporter permease	complement(524216..525145)	Alicycliphilus denitrificans K601	10481522
YP_004386437.1	CDS	Alide2_0502	NC_015422.1	525166	525951	R	PFAM: ABC transporter-like; KEGG: dac:Daci_1158 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(525166..525951)	Alicycliphilus denitrificans K601	10481523
YP_004386438.1	CDS	Alide2_0503	NC_015422.1	525969	527900	R	KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(525969..527900)	Alicycliphilus denitrificans K601	10481524
YP_004386439.1	CDS	Alide2_0504	NC_015422.1	528121	529812	D	KEGG: dia:Dtpsy_0462 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; SMART: ATPase, AAA+ type, core; peptidoglycan-binding domain 1 protein	528121..529812	Alicycliphilus denitrificans K601	10481525
YP_004386440.1	CDS	Alide2_0505	NC_015422.1	529817	530521	D	KEGG: ajs:Ajs_0472 hypothetical protein; hypothetical protein	529817..530521	Alicycliphilus denitrificans K601	10481526
YP_004386441.1	CDS	Alide2_0506	NC_015422.1	530651	531442	D	KEGG: ajs:Ajs_0473 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; putative Crp/Fnr family transcriptional regulator	530651..531442	Alicycliphilus denitrificans K601	10481527
YP_004386442.1	CDS	Alide2_0507	NC_015422.1	531481	532401	D	TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: ajs:Ajs_0474 RNA-binding S4 domain-containing protein; SMART: RNA-binding S4; pseudouridine synthase Rsu	531481..532401	Alicycliphilus denitrificans K601	10481528
YP_004386443.1	CDS	Alide2_0508	NC_015422.1	532499	534460	D	KEGG: dia:Dtpsy_0466 heat shock protein 90; PFAM: Heat shock protein Hsp90, C-terminal; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Heat shock protein Hsp90	532499..534460	Alicycliphilus denitrificans K601	10481529
YP_004386444.1	CDS	Alide2_0509	NC_015422.1	534493	534978	D	KEGG: dac:Daci_1191 hypothetical protein; hypothetical protein	534493..534978	Alicycliphilus denitrificans K601	10481530
YP_004386445.1	CDS	Alide2_0510	NC_015422.1	535072	536052	D	KEGG: dia:Dtpsy_0467 hypothetical protein; hypothetical protein	535072..536052	Alicycliphilus denitrificans K601	10481531
YP_004386446.1	CDS	Alide2_0511	NC_015422.1	536053	537096	R	PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0479 serine/threonine protein kinase; aminoglycoside phosphotransferase	complement(536053..537096)	Alicycliphilus denitrificans K601	10481532
YP_004386447.1	CDS	Alide2_0512	NC_015422.1	537119	538567	R	PFAM: Serine/threonine-protein kinase-like domain; UspA; KEGG: dia:Dtpsy_0471 serine/threonine protein kinase; serine/threonine protein kinase	complement(537119..538567)	Alicycliphilus denitrificans K601	10481533
YP_004386448.1	CDS	Alide2_0513	NC_015422.1	538571	539329	R	PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0472 metallophosphoesterase; metallophosphoesterase	complement(538571..539329)	Alicycliphilus denitrificans K601	10481534
YP_004386449.1	CDS	Alide2_0514	NC_015422.1	539559	540755	D	KEGG: ajs:Ajs_0058 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	539559..540755	Alicycliphilus denitrificans K601	10481535
YP_004386450.1	CDS	Alide2_0515	NC_015422.1	540790	541251	D	KEGG: ctt:CtCNB1_2196 hypothetical protein; hypothetical protein	540790..541251	Alicycliphilus denitrificans K601	10481536
YP_004386451.1	CDS	Alide2_0517	NC_015422.1	541514	542314	R	TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; KEGG: dia:Dtpsy_0475 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	complement(541514..542314)	Alicycliphilus denitrificans K601	10481538
YP_004386452.1	CDS	Alide2_0518	NC_015422.1	542317	543144	R	TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; KEGG: aav:Aave_4269 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Fumarylacetoacetase, C-terminal-like; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase	complement(542317..543144)	Alicycliphilus denitrificans K601	10481539
YP_004386453.1	CDS	Alide2_0519	NC_015422.1	543141	544010	R	KEGG: aav:Aave_4268 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetase, C-terminal-like; 5-carboxymethyl-2-hydroxymuconate Delta-isomerase	complement(543141..544010)	Alicycliphilus denitrificans K601	10481540
YP_004386454.1	CDS	Alide2_0520	NC_015422.1	544007	544900	R	PFAM: Amidohydrolase 2; KEGG: aav:Aave_4267 amidohydrolase 2; amidohydrolase 2	complement(544007..544900)	Alicycliphilus denitrificans K601	10481541
YP_004386455.1	CDS	Alide2_0521	NC_015422.1	544921	545373	R	PFAM: Endoribonuclease L-PSP; KEGG: aav:Aave_4266 endoribonuclease L-PSP; endoribonuclease L-PSP	complement(544921..545373)	Alicycliphilus denitrificans K601	10481542
YP_004386456.1	CDS	Alide2_0522	NC_015422.1	545331	546311	R	KEGG: aav:Aave_4265 hypothetical protein; hypothetical protein	complement(545331..546311)	Alicycliphilus denitrificans K601	10481543
YP_004386457.1	CDS	Alide2_0523	NC_015422.1	546516	547154	D	KEGG: aav:Aave_4263 flavin reductase domain-containing protein; PFAM: Flavin reductase-like, FMN-binding; SMART: Flavin reductase-like, FMN-binding; flavin reductase domain-containing proten	546516..547154	Alicycliphilus denitrificans K601	10481544
YP_004386458.1	CDS	Alide2_0524	NC_015422.1	547151	547939	D	KEGG: aav:Aave_4262 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	547151..547939	Alicycliphilus denitrificans K601	10481545
YP_004386459.1	CDS	Alide2_0525	NC_015422.1	547947	548795	R	KEGG: ajs:Ajs_3718 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA dehydrogenase	complement(547947..548795)	Alicycliphilus denitrificans K601	10481546
YP_004386460.1	CDS	Alide2_0526	NC_015422.1	548895	550487	D	KEGG: dia:Dtpsy_0477 choline dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; Choline dehydrogenase	548895..550487	Alicycliphilus denitrificans K601	10481547
YP_004386461.1	CDS	Alide2_0529	NC_015422.1	551199	552017	R	KEGG: ajs:Ajs_3712 ABC transporter; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter; ABC transporter	complement(551199..552017)	Alicycliphilus denitrificans K601	10481550
YP_004386462.1	CDS	Alide2_0530	NC_015422.1	552019	552960	R	PFAM: ABC transporter-like; KEGG: ajs:Ajs_3711 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase	complement(552019..552960)	Alicycliphilus denitrificans K601	10481551
YP_004386463.1	CDS	Alide2_0531	NC_015422.1	553065	554777	R	PFAM: Tannase/feruloyl esterase; KEGG: reu:Reut_A1509 tannase and feruloyl esterase; Tannase and feruloyl esterase	complement(553065..554777)	Alicycliphilus denitrificans K601	10481552
YP_004386464.1	CDS	Alide2_0532	NC_015422.1	554919	556403	R	TIGRFAM: AMP nucleosidase; KEGG: aav:Aave_4246 AMP nucleosidase; PFAM: AMP nucleoside phosphorylase, N-terminal; Nucleoside phosphorylase domain; AMP nucleosidase	complement(554919..556403)	Alicycliphilus denitrificans K601	10481553
YP_004386465.1	CDS	Alide2_0533	NC_015422.1	556439	558535	R	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; PAS fold-3; KEGG: dia:Dtpsy_0486 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	complement(556439..558535)	Alicycliphilus denitrificans K601	10481554
YP_004386466.1	CDS	Alide2_0534	NC_015422.1	558599	559591	D	KEGG: ajs:Ajs_3707 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter	558599..559591	Alicycliphilus denitrificans K601	10481555
YP_004386467.1	CDS	Alide2_0535	NC_015422.1	559588	560031	D	TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; HAMAP: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dia:Dtpsy_0488 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase	559588..560031	Alicycliphilus denitrificans K601	10481556
YP_004386468.1	CDS	Alide2_0536	NC_015422.1	560097	560843	R	PFAM: Protein of unknown function DUF81; KEGG: dia:Dtpsy_0490 protein of unknown function DUF81; hypothetical protein	complement(560097..560843)	Alicycliphilus denitrificans K601	10481557
YP_004386469.1	CDS	Alide2_0537	NC_015422.1	561009	561956	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1220 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(561009..561956)	Alicycliphilus denitrificans K601	10481558
YP_004386470.1	CDS	Alide2_0538	NC_015422.1	562061	563032	D	KEGG: dac:Daci_1221 hypothetical protein; hypothetical protein	562061..563032	Alicycliphilus denitrificans K601	10481559
YP_004386471.1	CDS	Alide2_0539	NC_015422.1	563052	564302	D	KEGG: dac:Daci_1222 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	563052..564302	Alicycliphilus denitrificans K601	10481560
YP_004386472.1	CDS	Alide2_0540	NC_015422.1	564335	565321	D	KEGG: dac:Daci_1223 quinone oxidoreductase; TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; YhdH/YhfP family quinone oxidoreductase	564335..565321	Alicycliphilus denitrificans K601	10481561
YP_004386473.1	CDS	Alide2_0541	NC_015422.1	565377	566936	D	KEGG: reh:H16_B1709 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	565377..566936	Alicycliphilus denitrificans K601	10481562
YP_004386474.1	CDS	Alide2_0542	NC_015422.1	566953	567405	R	TIGRFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; HAMAP: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; KEGG: ajs:Ajs_3702 hypothetical protein; PFAM: Uncharacterised protein family UPF0054, metalloprotease YbeY, predicted; metalloprotease ybeY	complement(566953..567405)	Alicycliphilus denitrificans K601	10481563
YP_004386475.1	CDS	Alide2_0543	NC_015422.1	567457	568407	R	PFAM: PhoH-like protein; KEGG: dia:Dtpsy_0492 PhoH family protein; PhoH family protein	complement(567457..568407)	Alicycliphilus denitrificans K601	10481564
YP_004386476.1	CDS	Alide2_0544	NC_015422.1	568455	569027	D	TIGRFAM: Bacterial DNA recombination protein RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; KEGG: dia:Dtpsy_0493 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding motif, class 1; Holliday junction DNA helicase RuvA	568455..569027	Alicycliphilus denitrificans K601	10481565
YP_004386477.1	CDS	Alide2_0545	NC_015422.1	569065	570546	D	KEGG: dia:Dtpsy_0494 endoproteinase Arg-C; endoproteinase ArgC	569065..570546	Alicycliphilus denitrificans K601	10481566
YP_004386478.1	CDS	Alide2_0546	NC_015422.1	570560	573364	R	KEGG: ajs:Ajs_3698 DnaK-related protein; DnaK-like protein	complement(570560..573364)	Alicycliphilus denitrificans K601	10481567
YP_004386479.1	CDS	Alide2_0547	NC_015422.1	573361	575253	R	KEGG: dac:Daci_5720 putative heat-shock chaperone protein; putative heat-shock chaperone protein	complement(573361..575253)	Alicycliphilus denitrificans K601	10481568
YP_004386480.1	CDS	Alide2_0548	NC_015422.1	575250	575855	R	KEGG: dac:Daci_5721 hypothetical protein; hypothetical protein	complement(575250..575855)	Alicycliphilus denitrificans K601	10481569
YP_004386481.1	CDS	Alide2_0549	NC_015422.1	575913	577040	D	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: dia:Dtpsy_0499 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; Holliday junction ATP-dependent DNA helicase ruvB	575913..577040	Alicycliphilus denitrificans K601	10481570
YP_004386482.1	CDS	Alide2_0550	NC_015422.1	577050	577772	R	PFAM: MgtC/SapB transporter; KEGG: dac:Daci_1228 MgtC/SapB transporter; MgtC/SapB transporter	complement(577050..577772)	Alicycliphilus denitrificans K601	10481571
YP_004386483.1	CDS	Alide2_0551	NC_015422.1	577828	578178	R	hypothetical protein	complement(577828..578178)	Alicycliphilus denitrificans K601	10481572
YP_004386484.1	CDS	Alide2_0552	NC_015422.1	578286	578480	R	KEGG: ctt:CtCNB1_4283 hypothetical protein; hypothetical protein	complement(578286..578480)	Alicycliphilus denitrificans K601	10481573
YP_004386485.1	CDS	Alide2_0553	NC_015422.1	578824	579987	R	PFAM: Alanine racemase, N-terminal; KEGG: dia:Dtpsy_0501 alanine racemase domain protein; alanine racemase domain-containing protein	complement(578824..579987)	Alicycliphilus denitrificans K601	10481574
YP_004386486.1	CDS	Alide2_0554	NC_015422.1	579971	580618	R	KEGG: dia:Dtpsy_0502 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase	complement(579971..580618)	Alicycliphilus denitrificans K601	10481575
YP_004386487.1	CDS	Alide2_0555	NC_015422.1	580626	581240	R	KEGG: dia:Dtpsy_0504 hypothetical protein; hypothetical protein	complement(580626..581240)	Alicycliphilus denitrificans K601	10481576
YP_004386488.1	CDS	Alide2_0556	NC_015422.1	581414	582346	R	KEGG: dia:Dtpsy_0505 PP-loop domain protein; HAMAP: 2-thiocytidine tRNA biosynthesis protein, TtcA; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; tRNA 2-thiocytidine biosynthesis protein TtcA	complement(581414..582346)	Alicycliphilus denitrificans K601	10481577
YP_004386489.1	CDS	Alide2_0557	NC_015422.1	582351	582743	R	TIGRFAM: Dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; KEGG: dia:Dtpsy_0506 dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; dihydroneopterin aldolase	complement(582351..582743)	Alicycliphilus denitrificans K601	10481578
YP_004386490.1	CDS	Alide2_0558	NC_015422.1	582748	583161	R	KEGG: dia:Dtpsy_0507 dihydroneopterin aldolase; PFAM: Dihydroneopterin aldolase; SMART: Dihydroneopterin aldolase; dihydroneopterin aldolase	complement(582748..583161)	Alicycliphilus denitrificans K601	10481579
YP_004386491.1	CDS	Alide2_0559	NC_015422.1	583158	583964	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bge:BC1002_2951 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(583158..583964)	Alicycliphilus denitrificans K601	10481580
YP_004386492.1	CDS	Alide2_0560	NC_015422.1	584103	585188	D	PFAM: Protein of unknown function DUF185; KEGG: dia:Dtpsy_0510 protein of unknown function DUF185; hypothetical protein	584103..585188	Alicycliphilus denitrificans K601	10481581
YP_004386493.1	CDS	Alide2_0561	NC_015422.1	585215	585619	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4030 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase	585215..585619	Alicycliphilus denitrificans K601	10481582
YP_004386494.1	CDS	Alide2_0562	NC_015422.1	585623	585817	D	KEGG: dia:Dtpsy_0515 hypothetical protein; hypothetical protein	585623..585817	Alicycliphilus denitrificans K601	10481583
YP_004386495.1	CDS	Alide2_0563	NC_015422.1	585960	586919	D	PFAM: ROK; KEGG: ajs:Ajs_0500 glucokinase; ROK family protein	585960..586919	Alicycliphilus denitrificans K601	10481584
YP_004386496.1	CDS	Alide2_0564	NC_015422.1	586880	588271	R	KEGG: ajs:Ajs_0501 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: Glycosyl transferase, family 20; alpha,alpha-trehalose-phosphate synthase	complement(586880..588271)	Alicycliphilus denitrificans K601	10481585
YP_004386497.1	CDS	Alide2_0565	NC_015422.1	588268	590070	R	PFAM: Glycoside hydrolase 15-related; KEGG: ajs:Ajs_0502 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein	complement(588268..590070)	Alicycliphilus denitrificans K601	10481586
YP_004386498.1	CDS	Alide2_0566	NC_015422.1	590076	590831	R	KEGG: dia:Dtpsy_0519 trehalose-phosphatase; TIGRFAM: Trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; trehalose-phosphatase	complement(590076..590831)	Alicycliphilus denitrificans K601	10481587
YP_004386499.1	CDS	Alide2_0567	NC_015422.1	590974	591420	D	TIGRFAM: Thioredoxin; Zinc finger/thioredoxin putative; KEGG: dia:Dtpsy_0520 thioredoxin; PFAM: Thioredoxin domain; thioredoxin	590974..591420	Alicycliphilus denitrificans K601	10481588
YP_004386500.1	CDS	Alide2_0568	NC_015422.1	591409	592656	R	HAMAP: tRNA nucleotidyltransferase, proteobacteria; KEGG: dia:Dtpsy_0521 polynucleotide adenylyltransferase/metal dependent phosphohydrolase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; polynucleotide adenylyltransferase/metal dependent phosphohydrolase	complement(591409..592656)	Alicycliphilus denitrificans K601	10481589
YP_004386501.1	CDS	Alide2_0569	NC_015422.1	592723	593706	D	KEGG: axy:AXYL_01756 acetoacetate metabolism regulatory protein AtoC; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma54 specific transcriptional regulator	592723..593706	Alicycliphilus denitrificans K601	10481590
YP_004386502.1	CDS	Alide2_0570	NC_015422.1	593891	595252	D	KEGG: vei:Veis_3993 hypothetical protein; hypothetical protein	593891..595252	Alicycliphilus denitrificans K601	10481591
YP_004386503.1	CDS	Alide2_0571	NC_015422.1	595267	595587	D	KEGG: axy:AXYL_01758 hypothetical protein; hypothetical protein	595267..595587	Alicycliphilus denitrificans K601	10481592
YP_004386504.1	CDS	Alide2_0572	NC_015422.1	595625	596596	D	KEGG: vei:Veis_3991 hypothetical protein; hypothetical protein	595625..596596	Alicycliphilus denitrificans K601	10481593
YP_004386505.1	CDS	Alide2_0573	NC_015422.1	596598	597368	R	PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_0522 metallophosphoesterase; metallophosphoesterase	complement(596598..597368)	Alicycliphilus denitrificans K601	10481594
YP_004386506.1	CDS	Alide2_0574	NC_015422.1	597387	598073	R	PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_0507 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein	complement(597387..598073)	Alicycliphilus denitrificans K601	10481595
YP_004386507.1	CDS	Alide2_0575	NC_015422.1	598162	598734	R	KEGG: dia:Dtpsy_0524 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase	complement(598162..598734)	Alicycliphilus denitrificans K601	10481596
YP_004386508.1	CDS	Alide2_0576	NC_015422.1	598749	600731	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_0525 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit	598749..600731	Alicycliphilus denitrificans K601	10481597
YP_004386509.1	CDS	Alide2_0577	NC_015422.1	600794	601321	R	KEGG: ajs:Ajs_0510 cytochrome b561; cytochrome b561	complement(600794..601321)	Alicycliphilus denitrificans K601	10481598
YP_004386510.1	CDS	Alide2_0578	NC_015422.1	601321	601593	R	KEGG: dia:Dtpsy_0527 putative signal peptide protein; hypothetical protein	complement(601321..601593)	Alicycliphilus denitrificans K601	10481599
YP_004386511.1	CDS	Alide2_0579	NC_015422.1	601730	602413	R	HAMAP: PKHD-type hydroxylase ybiX; PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_0512 putative hydroxylase; SMART: Prolyl 4-hydroxylase, alpha subunit; PKHD-type hydroxylase ybiX	complement(601730..602413)	Alicycliphilus denitrificans K601	10481600
YP_004386512.1	CDS	Alide2_0580	NC_015422.1	602407	603504	R	KEGG: ajs:Ajs_0513 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase; (S)-2-hydroxy-acid oxidase	complement(602407..603504)	Alicycliphilus denitrificans K601	10481601
YP_004386513.1	CDS	Alide2_0581	NC_015422.1	603558	605846	R	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ajs:Ajs_0514 TonB-dependent receptor; TonB-dependent receptor	complement(603558..605846)	Alicycliphilus denitrificans K601	10481602
YP_004386514.1	CDS	Alide2_0582	NC_015422.1	606001	606927	R	KEGG: ajs:Ajs_0515 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	complement(606001..606927)	Alicycliphilus denitrificans K601	10481603
YP_004386515.1	CDS	Alide2_0583	NC_015422.1	606946	608631	R	KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(606946..608631)	Alicycliphilus denitrificans K601	10481604
YP_004386516.1	CDS	Alide2_0584	NC_015422.1	608754	609656	D	KEGG: dia:Dtpsy_0533 PGAP1 family protein; PGAP1 family protein	608754..609656	Alicycliphilus denitrificans K601	10481605
YP_004386517.1	CDS	Alide2_0585	NC_015422.1	609759	610976	R	PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; KEGG: dia:Dtpsy_0542 beta-ketoacyl synthase; SMART: Polyketide synthase, beta-ketoacyl synthase domain; 3-ketoacyl-ACP synthase I	complement(609759..610976)	Alicycliphilus denitrificans K601	10481606
YP_004386518.1	CDS	Alide2_0586	NC_015422.1	610991	611497	R	TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: dia:Dtpsy_0541 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxyacyl-ACP dehydratase	complement(610991..611497)	Alicycliphilus denitrificans K601	10481607
YP_004386519.1	CDS	Alide2_0587	NC_015422.1	611586	613175	R	KEGG: ajs:Ajs_0524 apolipoprotein N-acyltransferase; TIGRFAM: Apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase	complement(611586..613175)	Alicycliphilus denitrificans K601	10481608
YP_004386520.1	CDS	Alide2_0588	NC_015422.1	613175	614062	R	PFAM: Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: ajs:Ajs_0523 CBS domain-containing protein; CBS domain-containing protein	complement(613175..614062)	Alicycliphilus denitrificans K601	10481609
YP_004386521.1	CDS	Alide2_0589	NC_015422.1	614173	614874	R	KEGG: ajs:Ajs_0522 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; GCN5-like N-acetyltransferase	complement(614173..614874)	Alicycliphilus denitrificans K601	10481610
YP_004386522.1	CDS	Alide2_0590	NC_015422.1	615025	615510	R	KEGG: dia:Dtpsy_0537 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	complement(615025..615510)	Alicycliphilus denitrificans K601	10481611
YP_004386523.1	CDS	Alide2_0591	NC_015422.1	615670	616791	D	TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; KEGG: ajs:Ajs_0520 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase	615670..616791	Alicycliphilus denitrificans K601	10481612
YP_004386524.1	CDS	Alide2_0592	NC_015422.1	616793	617617	D	TIGRFAM: Phenylalanine-4-hydroxylase, monomeric form; KEGG: dia:Dtpsy_0534 phenylalanine 4-monooxygenase; PFAM: Aromatic amino acid hydroxylase, C-terminal; phenylalanine-4-hydroxylase	616793..617617	Alicycliphilus denitrificans K601	10481613
YP_004386525.1	CDS	Alide2_0593	NC_015422.1	617758	618993	D	KEGG: pol:Bpro_0273 branched-chain alpha-keto acid dehydrogenase E1 component; PFAM: Dehydrogenase, E1 component; 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal; 3-methyl-2-oxobutanoate dehydrogenase	617758..618993	Alicycliphilus denitrificans K601	10481614
YP_004386526.1	CDS	Alide2_0594	NC_015422.1	619033	620037	D	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: pol:Bpro_0274 branched-chain alpha-keto acid dehydrogenase E1 component; SMART: Transketolase-like, pyrimidine-binding domain; 3-methyl-2-oxobutanoate dehydrogenase	619033..620037	Alicycliphilus denitrificans K601	10481615
YP_004386527.1	CDS	Alide2_0595	NC_015422.1	620039	621346	D	KEGG: axy:AXYL_02631 lipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; dihydrolipoyllysine-residue (2-methylpropanoyl)transferase	620039..621346	Alicycliphilus denitrificans K601	10481616
YP_004386528.1	CDS	Alide2_0596	NC_015422.1	621354	622751	D	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: axy:AXYL_02632 dihydrolipoyl dehydrogenase 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; dihydrolipoamide dehydrogenase	621354..622751	Alicycliphilus denitrificans K601	10481617
YP_004386529.1	CDS	Alide2_0597	NC_015422.1	622856	623794	D	TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: dac:Daci_1288 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; glycyl-tRNA synthetase subunit alpha	622856..623794	Alicycliphilus denitrificans K601	10481618
YP_004386530.1	CDS	Alide2_0598	NC_015422.1	623814	625979	D	TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, beta subunit; KEGG: ajs:Ajs_0528 glycine--tRNA ligase; glycyl-tRNA synthetase subunit beta	623814..625979	Alicycliphilus denitrificans K601	10481619
YP_004386531.1	CDS	Alide2_0599	NC_015422.1	626025	626600	D	TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; KEGG: dia:Dtpsy_0545 histidinol-phosphate phosphatase family protein; histidinol-phosphate phosphatase family protein	626025..626600	Alicycliphilus denitrificans K601	10481620
YP_004386532.1	CDS	Alide2_0600	NC_015422.1	626851	627594	D	KEGG: ajs:Ajs_0530 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	626851..627594	Alicycliphilus denitrificans K601	10481621
YP_004386533.1	CDS	Alide2_0601	NC_015422.1	627597	628400	D	PFAM: Protein of unknown function DUF45; KEGG: dia:Dtpsy_0547 protein of unknown function DUF45; hypothetical protein	627597..628400	Alicycliphilus denitrificans K601	10481622
YP_004386534.1	CDS	Alide2_0602	NC_015422.1	628461	628895	D	SMART: Rhodanese-like; KEGG: ajs:Ajs_0532 rhodanese domain-containing protein; Rhodanese-like protein	628461..628895	Alicycliphilus denitrificans K601	10481623
YP_004386535.1	CDS	Alide2_0603	NC_015422.1	628900	629388	R	KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM; PFAM: Transport-associated; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; transport-associated protein	complement(628900..629388)	Alicycliphilus denitrificans K601	10481624
YP_004386536.1	CDS	Alide2_0604	NC_015422.1	629535	630311	D	KEGG: dia:Dtpsy_0550 pantothenate kinase; TIGRFAM: Type III pantothenate kinase; PFAM: Type III pantothenate kinase; putative Baf family transcriptional acitvator	629535..630311	Alicycliphilus denitrificans K601	10481625
YP_004386537.1	CDS	Alide2_0605	NC_015422.1	630308	630985	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0551 transcriptional regulator, TetR family; TetR family transcriptional regulator	complement(630308..630985)	Alicycliphilus denitrificans K601	10481626
YP_004386538.1	CDS	Alide2_0606	NC_015422.1	631143	631586	R	KEGG: dia:Dtpsy_0552 poly(hydroxyalkanoate) granule-associated protein; TIGRFAM: Poly granule associated; PFAM: Poly granule associated; poly(hydroxyalkanoate) granule-associated protein	complement(631143..631586)	Alicycliphilus denitrificans K601	10481627
YP_004386539.1	CDS	Alide2_0607	NC_015422.1	631785	632846	D	TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase	631785..632846	Alicycliphilus denitrificans K601	10481628
YP_004386540.1	CDS	Alide2_0608	NC_015422.1	632843	633721	D	TIGRFAM: dTDP-4-dehydrorhamnose reductase; KEGG: ajs:Ajs_0538 dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase	632843..633721	Alicycliphilus denitrificans K601	10481629
YP_004386541.1	CDS	Alide2_0609	NC_015422.1	633732	634622	D	TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; KEGG: bvi:Bcep1808_3215 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase	633732..634622	Alicycliphilus denitrificans K601	10481630
YP_004386542.1	CDS	Alide2_0610	NC_015422.1	634622	635167	D	TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; KEGG: dia:Dtpsy_0556 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase-related; dTDP-4-dehydrorhamnose 3,5-epimerase	634622..635167	Alicycliphilus denitrificans K601	10481631
YP_004386543.1	CDS	Alide2_0611	NC_015422.1	635158	636339	D	PFAM: Domain of unknown function DUF1972; Glycosyl transferase, group 1; KEGG: gme:Gmet_2169 glycosyltransferase-like protein; hypothetical protein	635158..636339	Alicycliphilus denitrificans K601	10481632
YP_004386544.1	CDS	Alide2_0612	NC_015422.1	636336	637247	D	KEGG: ajs:Ajs_0541 rhamnosyltransferase; TIGRFAM: Rhamnosyltransferase; PFAM: Glycosyl transferase, family 2; rhamnosyltransferase	636336..637247	Alicycliphilus denitrificans K601	10481633
YP_004386545.1	CDS	Alide2_0613	NC_015422.1	637255	638958	D	PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: vei:Veis_0688 general secretory pathway protein E; type II secretion system protein E	637255..638958	Alicycliphilus denitrificans K601	10481634
YP_004386546.1	CDS	Alide2_0614	NC_015422.1	638951	640162	D	PFAM: Type II secretion system F domain; KEGG: eba:ebA1619 general secretion pathway protein F; type II secretion system F domain-containing protein	638951..640162	Alicycliphilus denitrificans K601	10481635
YP_004386547.1	CDS	Alide2_0615	NC_015422.1	640189	640629	D	KEGG: aav:Aave_4158 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein G	640189..640629	Alicycliphilus denitrificans K601	10481636
YP_004386548.1	CDS	Alide2_0616	NC_015422.1	640659	641141	D	KEGG: dac:Daci_1302 general secretion pathway protein H; general secretion pathway protein H	640659..641141	Alicycliphilus denitrificans K601	10481637
YP_004386549.1	CDS	Alide2_0617	NC_015422.1	641138	641539	D	KEGG: aav:Aave_4156 general secretion pathway protein I; general secretion pathway protein I	641138..641539	Alicycliphilus denitrificans K601	10481638
YP_004386550.1	CDS	Alide2_0618	NC_015422.1	641536	642147	D	KEGG: vei:Veis_0683 general secretion pathway protein J; general secretion pathway protein J	641536..642147	Alicycliphilus denitrificans K601	10481639
YP_004386551.1	CDS	Alide2_0619	NC_015422.1	642144	643055	D	KEGG: eba:ebA1612 general secretory pathway protein K; hypothetical protein	642144..643055	Alicycliphilus denitrificans K601	10481640
YP_004386552.1	CDS	Alide2_0620	NC_015422.1	643052	644065	D	PFAM: Fimbrial assembly; KEGG: aav:Aave_4153 fimbrial assembly family protein; Fimbrial assembly family protein	643052..644065	Alicycliphilus denitrificans K601	10481641
YP_004386553.1	CDS	Alide2_0621	NC_015422.1	644062	644610	D	PFAM: General secretion pathway protein M; KEGG: vei:Veis_0680 general secretion pathway protein M; general secretion pathway protein M	644062..644610	Alicycliphilus denitrificans K601	10481642
YP_004386554.1	CDS	Alide2_0622	NC_015422.1	644607	644948	D	hypothetical protein	644607..644948	Alicycliphilus denitrificans K601	10481643
YP_004386555.1	CDS	Alide2_0623	NC_015422.1	644933	645226	R	KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein	complement(644933..645226)	Alicycliphilus denitrificans K601	10481644
YP_004386556.1	CDS	Alide2_0624	NC_015422.1	645192	646322	R	KEGG: pol:Bpro_2745 putative transposase; putative transposase	complement(645192..646322)	Alicycliphilus denitrificans K601	10481645
YP_004386557.1	CDS	Alide2_0625	NC_015422.1	646531	647694	D	PFAM: Glycosyl transferase, group 1; KEGG: dbr:Deba_0993 glycosyl transferase group 1; group 1 glycosyl transferase	646531..647694	Alicycliphilus denitrificans K601	10481646
YP_004386558.1	CDS	Alide2_0626	NC_015422.1	647765	648589	D	PFAM: ABC-2 type transporter; KEGG: mag:amb1063 ABC-type polysaccharide/polyol phosphate export systems; ABC transporter	647765..648589	Alicycliphilus denitrificans K601	10481647
YP_004386559.1	CDS	Alide2_0627	NC_015422.1	648589	649809	D	PFAM: ABC transporter-like; KEGG: vei:Veis_0673 ABC transporter related; SMART: ATPase, AAA+ type, core; Teichoic-acid-transporting ATPase	648589..649809	Alicycliphilus denitrificans K601	10481648
YP_004386560.1	CDS	Alide2_0628	NC_015422.1	649791	650702	D	hypothetical protein	649791..650702	Alicycliphilus denitrificans K601	10481649
YP_004386561.1	CDS	Alide2_0629	NC_015422.1	650695	651699	D	PFAM: Methyltransferase type 11; KEGG: azl:AZL_f01750 hypothetical protein; type 11 methyltransferase	650695..651699	Alicycliphilus denitrificans K601	10481650
YP_004386562.1	CDS	Alide2_0630	NC_015422.1	651716	652360	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: rso:RSc0977 putative transglycosylase signal peptide protein; lytic transglycosylase catalytic subunit	651716..652360	Alicycliphilus denitrificans K601	10481651
YP_004386563.1	CDS	Alide2_0631	NC_015422.1	652394	653494	D	PFAM: Glycosyl transferase, family 4; KEGG: vei:Veis_1227 glycosyl transferase family protein; glycosyl transferase family 4	652394..653494	Alicycliphilus denitrificans K601	10481652
YP_004386564.1	CDS	Alide2_0632	NC_015422.1	653555	654445	D	TIGRFAM: Acetylglutamate kinase; KEGG: ajs:Ajs_0588 acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; acetylglutamate kinase	653555..654445	Alicycliphilus denitrificans K601	10481653
YP_004386565.1	CDS	Alide2_0633	NC_015422.1	654628	655263	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_0589 nucleoid occlusion protein; TetR family transcriptional regulator	654628..655263	Alicycliphilus denitrificans K601	10481654
YP_004386566.1	CDS	Alide2_0634	NC_015422.1	655405	656061	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_0570 transcriptional regulator, TetR family; TetR family transcriptional regulator	655405..656061	Alicycliphilus denitrificans K601	10481655
YP_004386567.1	CDS	Alide2_0635	NC_015422.1	656109	657905	D	KEGG: dia:Dtpsy_0571 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	656109..657905	Alicycliphilus denitrificans K601	10481656
YP_004386568.1	CDS	Alide2_0636	NC_015422.1	657976	658404	D	KEGG: dia:Dtpsy_0572 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2147; hypothetical protein	657976..658404	Alicycliphilus denitrificans K601	10481657
YP_004386569.1	CDS	Alide2_0637	NC_015422.1	658426	660828	D	PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; KEGG: dac:Daci_1339 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein	658426..660828	Alicycliphilus denitrificans K601	10481658
YP_004386570.1	CDS	Alide2_0638	NC_015422.1	660849	662042	D	TIGRFAM: Thiolase; KEGG: xtr:100490800 3-ketoacyl-CoA thiolase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	660849..662042	Alicycliphilus denitrificans K601	10481659
YP_004386571.1	CDS	Alide2_0639	NC_015422.1	662086	662919	D	KEGG: dia:Dtpsy_0576 hypothetical protein; hypothetical protein	662086..662919	Alicycliphilus denitrificans K601	10481660
YP_004386572.1	CDS	Alide2_0640	NC_015422.1	662927	663703	D	PFAM: Crotonase, core; KEGG: dia:Dtpsy_0577 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	662927..663703	Alicycliphilus denitrificans K601	10481661
YP_004386573.1	CDS	Alide2_0641	NC_015422.1	664048	664608	D	PFAM: Protein of unknown function DUF583; KEGG: dia:Dtpsy_0579 protein of unknown function DUF583; hypothetical protein	664048..664608	Alicycliphilus denitrificans K601	10481662
YP_004386574.1	CDS	Alide2_0642	NC_015422.1	664660	665085	R	PFAM: Thioesterase superfamily; KEGG: ajs:Ajs_0601 thioesterase superfamily protein; thioesterase superfamily protein	complement(664660..665085)	Alicycliphilus denitrificans K601	10481663
YP_004386575.1	CDS	Alide2_0643	NC_015422.1	665128	666939	D	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: ajs:Ajs_0602 ABC transporter related; SMART: ATPase, AAA+ type, core; Xenobiotic-transporting ATPase	665128..666939	Alicycliphilus denitrificans K601	10481664
YP_004386576.1	CDS	Alide2_0644	NC_015422.1	666989	667321	D	PFAM: NTP pyrophosphohydrolase MazG, putative catalytic core; KEGG: ajs:Ajs_0603 MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase	666989..667321	Alicycliphilus denitrificans K601	10481665
YP_004386577.1	CDS	Alide2_0645	NC_015422.1	667376	668407	R	KEGG: ajs:Ajs_0604 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP	complement(667376..668407)	Alicycliphilus denitrificans K601	10481666
YP_004386578.1	CDS	Alide2_0646	NC_015422.1	668431	669729	R	KEGG: ajs:Ajs_0605 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	complement(668431..669729)	Alicycliphilus denitrificans K601	10481667
YP_004386579.1	CDS	Alide2_0647	NC_015422.1	669726	670307	R	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ajs:Ajs_0606 tripartite ATP-independent periplasmic transporter DctQ; TRAP dicarboxylate transporter subunit DctQ	complement(669726..670307)	Alicycliphilus denitrificans K601	10481668
YP_004386580.1	CDS	Alide2_0648	NC_015422.1	670474	671421	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0586 transcriptional regulator, LysR family; LysR family transcriptional regulator	670474..671421	Alicycliphilus denitrificans K601	10481669
YP_004386581.1	CDS	Alide2_0649	NC_015422.1	671625	672524	D	KEGG: dia:Dtpsy_0588 extracellular solute-binding protein family 3; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	671625..672524	Alicycliphilus denitrificans K601	10481670
YP_004386582.1	CDS	Alide2_0650	NC_015422.1	672628	673380	D	KEGG: dia:Dtpsy_0589 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	672628..673380	Alicycliphilus denitrificans K601	10481671
YP_004386583.1	CDS	Alide2_0651	NC_015422.1	673382	674053	D	KEGG: ctt:CtCNB1_4180 glutamate/aspartate transport systempermease protein GltK; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	673382..674053	Alicycliphilus denitrificans K601	10481672
YP_004386584.1	CDS	Alide2_0652	NC_015422.1	674078	674815	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0591 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	674078..674815	Alicycliphilus denitrificans K601	10481673
YP_004386585.1	CDS	Alide2_0653	NC_015422.1	674921	675955	R	KEGG: dia:Dtpsy_0592 ornithine cyclodeaminase; PFAM: Ornithine cyclodeaminase/mu-crystallin; Ornithine cyclodeaminase	complement(674921..675955)	Alicycliphilus denitrificans K601	10481674
YP_004386586.1	CDS	Alide2_0654	NC_015422.1	676016	676837	R	KEGG: ajs:Ajs_0616 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: HAD superfamily hydrolase-like, type 3; HAD superfamily hydrolase	complement(676016..676837)	Alicycliphilus denitrificans K601	10481675
YP_004386587.1	CDS	Alide2_0655	NC_015422.1	676840	678465	R	KEGG: xtr:100494427 peptide chain release factor 3-like; TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; peptide chain release factor 3	complement(676840..678465)	Alicycliphilus denitrificans K601	10481676
YP_004386588.1	CDS	Alide2_0656	NC_015422.1	678568	679338	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_0646 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(678568..679338)	Alicycliphilus denitrificans K601	10481677
YP_004386589.1	CDS	Alide2_0657	NC_015422.1	679580	681010	D	TIGRFAM: Adenosylhomocysteinase; KEGG: dia:Dtpsy_0597 S-adenosyl-L-homocysteine hydrolase; PFAM: Adenosylhomocysteinase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase	679580..681010	Alicycliphilus denitrificans K601	10481678
YP_004386590.1	CDS	Alide2_0658	NC_015422.1	681117	682118	D	PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: ajs:Ajs_0619 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ	681117..682118	Alicycliphilus denitrificans K601	10481679
YP_004386591.1	CDS	Alide2_0659	NC_015422.1	682115	682942	D	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: dia:Dtpsy_0599 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase	682115..682942	Alicycliphilus denitrificans K601	10481680
YP_004386592.1	CDS	Alide2_0660	NC_015422.1	682936	683688	D	manually curated; TIGRFAM: Rare lipoprotein A, bacterial; KEGG: dia:Dtpsy_0601 rare lipoprotein A; PFAM: Barwin-related endoglucanase; rare lipoprotein A	682936..683688	Alicycliphilus denitrificans K601	10481681
YP_004386593.1	CDS	Alide2_0661	NC_015422.1	683689	684606	R	PFAM: Protein of unknown function DUF519; KEGG: dia:Dtpsy_0602 protein of unknown function DUF519; hypothetical protein	complement(683689..684606)	Alicycliphilus denitrificans K601	10481682
YP_004386594.1	CDS	Alide2_0662	NC_015422.1	684783	686579	D	KEGG: ajs:Ajs_0624 protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase	684783..686579	Alicycliphilus denitrificans K601	10481683
YP_004386595.1	CDS	Alide2_0663	NC_015422.1	686685	687152	D	KEGG: xtr:100489998 50S ribosomal protein L13-like; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; 50S ribosomal protein L13	686685..687152	Alicycliphilus denitrificans K601	10481684
YP_004386596.1	CDS	Alide2_0664	NC_015422.1	687162	687554	D	PFAM: Ribosomal protein S9; KEGG: xtr:100487283 30S ribosomal protein S9-like; 30S ribosomal protein S9	687162..687554	Alicycliphilus denitrificans K601	10481685
YP_004386597.1	CDS	Alide2_0665	NC_015422.1	687718	688092	D	KEGG: dia:Dtpsy_0608 iron-sulfur cluster insertion protein ErpA; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein	687718..688092	Alicycliphilus denitrificans K601	10481686
YP_004386598.1	CDS	Alide2_0666	NC_015422.1	688704	689828	R	manually curated; HAMAP: Anhydro-N-acetylmuramic acid kinase; KEGG: dia:Dtpsy_0609 anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase; Anhydro-N-acetylmuramic acid kinase	complement(688704..689828)	Alicycliphilus denitrificans K601	10481687
YP_004386599.1	CDS	Alide2_0667	NC_015422.1	689844	691226	R	PFAM: Peptidase M23; KEGG: ajs:Ajs_0631 peptidase M23B; peptidase M23	complement(689844..691226)	Alicycliphilus denitrificans K601	10481688
YP_004386600.1	CDS	Alide2_0668	NC_015422.1	691398	692630	D	KEGG: ajs:Ajs_0632 tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; manually curated; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib; SMART: RNA-binding S4; tyrosyl-tRNA synthetase	691398..692630	Alicycliphilus denitrificans K601	10481689
YP_004386601.1	CDS	Alide2_0669	NC_015422.1	692692	693657	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_0634 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(692692..693657)	Alicycliphilus denitrificans K601	10481690
YP_004386602.1	CDS	Alide2_0670	NC_015422.1	693709	695133	D	TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: ajs:Ajs_0636 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; Bacterial transferase hexapeptide repeat; UDP-N-acetylglucosamine pyrophosphorylase	693709..695133	Alicycliphilus denitrificans K601	10481691
YP_004386603.1	CDS	Alide2_0671	NC_015422.1	695130	695912	D	KEGG: ajs:Ajs_0637 histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; histidine kinase	695130..695912	Alicycliphilus denitrificans K601	10481692
YP_004386604.1	CDS	Alide2_0672	NC_015422.1	695941	696276	R	KEGG: dia:Dtpsy_0617 MerR family transcriptional regulator; MerR family transcriptional regulator	complement(695941..696276)	Alicycliphilus denitrificans K601	10481693
YP_004386605.1	CDS	Alide2_0673	NC_015422.1	696279	697274	R	KEGG: dia:Dtpsy_0618 heat shock protein DnaJ domain protein; PFAM: Heat shock protein DnaJ, N-terminal; Chaperone DnaJ, C-terminal; SMART: Heat shock protein DnaJ, N-terminal; heat shock protein DnaJ domain-containing protein	complement(696279..697274)	Alicycliphilus denitrificans K601	10481694
YP_004386606.1	CDS	Alide2_0674	NC_015422.1	697379	697900	R	KEGG: ajs:Ajs_0640 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	complement(697379..697900)	Alicycliphilus denitrificans K601	10481695
YP_004386607.1	CDS	Alide2_0675	NC_015422.1	698005	699915	D	PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; KEGG: dia:Dtpsy_0620 glucosamine--fructose-6-phosphate aminotransferase; glucosamine--fructose-6-phosphate aminotransferase	698005..699915	Alicycliphilus denitrificans K601	10481696
YP_004386608.1	CDS	Alide2_0676	NC_015422.1	700592	701395	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(700592..701395)	Alicycliphilus denitrificans K601	10481697
YP_004386609.1	CDS	Alide2_0677	NC_015422.1	701385	702911	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(701385..702911)	Alicycliphilus denitrificans K601	10481698
YP_004386610.1	CDS	Alide2_0678	NC_015422.1	702997	703221	R	KEGG: ajs:Ajs_2916 transposase IS66; transposase IS66	complement(702997..703221)	Alicycliphilus denitrificans K601	10481699
YP_004386611.1	CDS	Alide2_0679	NC_015422.1	703304	703636	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(703304..703636)	Alicycliphilus denitrificans K601	10481700
YP_004386612.1	CDS	Alide2_0680	NC_015422.1	703633	704061	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(703633..704061)	Alicycliphilus denitrificans K601	10481701
YP_004386613.1	CDS	Alide2_0681	NC_015422.1	704813	705067	R	KEGG: ctt:CtCNB1_4017 hypothetical protein; hypothetical protein	complement(704813..705067)	Alicycliphilus denitrificans K601	10481702
YP_004386614.1	CDS	Alide2_0682	NC_015422.1	705141	705929	R	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: ctt:CtCNB1_4018 oxidoreductase, molybdopterin binding protein; oxidoreductase molybdopterin binding protein	complement(705141..705929)	Alicycliphilus denitrificans K601	10481703
YP_004386615.1	CDS	Alide2_0683	NC_015422.1	705926	706582	R	KEGG: ctt:CtCNB1_4019 putative transmembrane hydrogenase cytochrome; putative transmembrane hydrogenase cytochrome	complement(705926..706582)	Alicycliphilus denitrificans K601	10481704
YP_004386616.1	CDS	Alide2_0684	NC_015422.1	706678	707388	D	KEGG: pol:Bpro_0543 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	706678..707388	Alicycliphilus denitrificans K601	10481705
YP_004386617.1	CDS	Alide2_0685	NC_015422.1	707385	708866	D	KEGG: vap:Vapar_2987 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	707385..708866	Alicycliphilus denitrificans K601	10481706
YP_004386618.1	CDS	Alide2_0686	NC_015422.1	708884	709231	R	hypothetical protein	complement(708884..709231)	Alicycliphilus denitrificans K601	10481707
YP_004386619.1	CDS	Alide2_0687	NC_015422.1	709407	710213	R	TIGRFAM: PEP-CTERM anchor; PFAM: von Willebrand factor, type A; PEP-CTERM bacterial; KEGG: cja:CJA_0975 von Willebrand factor type A domain protein; SMART: von Willebrand factor, type A; PEP motif putative anchor domain-containing protein	complement(709407..710213)	Alicycliphilus denitrificans K601	10481708
YP_004386620.1	CDS	Alide2_0688	NC_015422.1	710624	712066	D	TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: rfr:Rfer_0711 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	710624..712066	Alicycliphilus denitrificans K601	10481709
YP_004386621.1	CDS	Alide2_0689	NC_015422.1	712290	712931	D	KEGG: rfr:Rfer_0658 polysaccharide export protein; TIGRFAM: PEP-CTERM, putative polysaccharide export protein; PFAM: Polysaccharide export protein; Soluble ligand binding domain; polysaccharide export protein	712290..712931	Alicycliphilus denitrificans K601	10481710
YP_004386622.1	CDS	Alide2_0690	NC_015422.1	712978	714540	D	manually curated; TIGRFAM: PEP-CTERM locus polysaccharide chain length determinant; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; PFAM: Lipopolysaccharide biosynthesis; polysaccharide chain length determinant protein	712978..714540	Alicycliphilus denitrificans K601	10481711
YP_004386623.1	CDS	Alide2_0691	NC_015422.1	714549	715511	D	manually curated; KEGG: app:CAP2UW1_1413 non-specific protein-tyrosine kinase; non-specific protein-tyrosine kinase	714549..715511	Alicycliphilus denitrificans K601	10481712
YP_004386624.1	CDS	Alide2_0692	NC_015422.1	715540	717195	D	TIGRFAM: Conserved hypothetical protein CHP03016, PEP-CTERM; KEGG: rfr:Rfer_0661 hypothetical protein; PEP-CTERM system associated protein	715540..717195	Alicycliphilus denitrificans K601	10481713
YP_004386625.1	CDS	Alide2_0693	NC_015422.1	717199	718299	D	KEGG: rfr:Rfer_0662 ATPase; TIGRFAM: ATPase, secretion system, PEP-CTERM, predicted; SMART: ATPase, AAA+ type, core; secretion ATPase	717199..718299	Alicycliphilus denitrificans K601	10481714
YP_004386626.1	CDS	Alide2_0694	NC_015422.1	718308	719174	D	KEGG: app:CAP2UW1_1417 polysaccharide deactylase family protein, PEP-Cterm locus subfamily; TIGRFAM: PEP-CTERM locus, polysaccharide deactylase; PFAM: Polysaccharide deacetylase; polysaccharide deactylase family protein	718308..719174	Alicycliphilus denitrificans K601	10481715
YP_004386627.1	CDS	Alide2_0695	NC_015422.1	719182	720228	D	KEGG: rfr:Rfer_0665 hypothetical protein; manually curated; TIGRFAM: PEP-CTERM system-associated, FemAB-related; FemAB-like protein	719182..720228	Alicycliphilus denitrificans K601	10481716
YP_004386628.1	CDS	Alide2_0696	NC_015422.1	720242	721480	D	KEGG: dar:Daro_2405 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp1; PFAM: Glycosyl transferase, group 1; sugar transferase	720242..721480	Alicycliphilus denitrificans K601	10481717
YP_004386629.1	CDS	Alide2_0697	NC_015422.1	721458	723059	D	KEGG: rfr:Rfer_0666 hypothetical protein; TIGRFAM: Exosortase 1; Exosortase, EpsH; Methanolan biosynthesis EpsI; PFAM: Exosortase EpsH-related; exosortase 1	721458..723059	Alicycliphilus denitrificans K601	10481718
YP_004386630.1	CDS	Alide2_0698	NC_015422.1	723062	724972	D	TIGRFAM: Exosortase 1 system-associated amidotransferase 1; Asparagine synthase, glutamine-hydrolyzing; KEGG: rfr:Rfer_0669 asparagine synthase, glutamine-hydrolyzing; PFAM: Asparagine synthase; Glutamine amidotransferase, class-II; exosortase 1 system-associated amidotransferase 1	723062..724972	Alicycliphilus denitrificans K601	10481719
YP_004386631.1	CDS	Alide2_0699	NC_015422.1	724965	726119	D	KEGG: rfr:Rfer_0668 glycosyl transferase, group 1; TIGRFAM: Sugar transferase, PEP-CTERM, Stp2; PFAM: Glycosyl transferase, group 1; sugar transferase	724965..726119	Alicycliphilus denitrificans K601	10481720
YP_004386632.1	CDS	Alide2_0700	NC_015422.1	726121	727275	D	PFAM: Glycosyl transferase, group 1; KEGG: rru:Rru_A3107 glycosyl transferase, group 1; group 1 glycosyl transferase	726121..727275	Alicycliphilus denitrificans K601	10481721
YP_004386633.1	CDS	Alide2_0701	NC_015422.1	727275	728456	D	PFAM: Glycosyl transferase, group 1; KEGG: hse:Hsero_2751 glycosyltransferase 1 protein; group 1 glycosyl transferase	727275..728456	Alicycliphilus denitrificans K601	10481722
YP_004386634.1	CDS	Alide2_0702	NC_015422.1	728443	730065	D	KEGG: tmz:Tmz1t_3254 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; 4-amino-4-deoxy-L-arabinose transferase-like protein	728443..730065	Alicycliphilus denitrificans K601	10481723
YP_004386635.1	CDS	Alide2_0703	NC_015422.1	730090	730221	D	hypothetical protein	730090..730221	Alicycliphilus denitrificans K601	10481724
YP_004386636.1	CDS	Alide2_0704	NC_015422.1	730256	731587	D	TIGRFAM: Conserved hypothetical protein CHP03097, O-antigen ligase-related; KEGG: hse:Hsero_2764 O-antigen polymerase; wzy family polymerase	730256..731587	Alicycliphilus denitrificans K601	10481725
YP_004386637.1	CDS	Alide2_0705	NC_015422.1	731584	732546	D	PFAM: Polysaccharide deacetylase; KEGG: neu:NE0847 hypothetical protein; polysaccharide deacetylase	731584..732546	Alicycliphilus denitrificans K601	10481726
YP_004386638.1	CDS	Alide2_0706	NC_015422.1	732543	733556	D	PFAM: Polysaccharide deacetylase; KEGG: tgr:Tgr7_2375 polysaccharide deacetylase; polysaccharide deacetylase	732543..733556	Alicycliphilus denitrificans K601	10481727
YP_004386639.1	CDS	Alide2_0707	NC_015422.1	733568	734605	D	KEGG: psl:Psta_3837 hypothetical protein; hypothetical protein	733568..734605	Alicycliphilus denitrificans K601	10481728
YP_004386640.1	CDS	Alide2_0708	NC_015422.1	734606	735553	R	PFAM: Glycosyl transferase, family 2; KEGG: tkm:TK90_2524 glycosyl transferase family 2; family 2 glycosyl transferase	complement(734606..735553)	Alicycliphilus denitrificans K601	10481729
YP_004386641.1	CDS	Alide2_0709	NC_015422.1	735666	737087	R	PFAM: Polysaccharide biosynthesis protein; KEGG: nwa:Nwat_1744 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein	complement(735666..737087)	Alicycliphilus denitrificans K601	10481730
YP_004386642.1	CDS	Alide2_0710	NC_015422.1	737184	738281	R	KEGG: pol:Bpro_3996 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase	complement(737184..738281)	Alicycliphilus denitrificans K601	10481731
YP_004386643.1	CDS	Alide2_0711	NC_015422.1	738308	739585	R	manually curated; TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: reu:Reut_B5375 UDP-glucose/GDP-mannose dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase	complement(738308..739585)	Alicycliphilus denitrificans K601	10481732
YP_004386644.1	CDS	Alide2_0712	NC_015422.1	740089	741981	R	KEGG: hse:Hsero_2760 hypothetical protein; hypothetical protein	complement(740089..741981)	Alicycliphilus denitrificans K601	10481733
YP_004386645.1	CDS	Alide2_0713	NC_015422.1	742681	743748	D	manually curated; KEGG: hse:Hsero_2738 hypothetical protein; hypothetical protein	742681..743748	Alicycliphilus denitrificans K601	10481734
YP_004386646.1	CDS	Alide2_0714	NC_015422.1	743851	744609	R	KEGG: cyt:cce_4547 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein	complement(743851..744609)	Alicycliphilus denitrificans K601	10481735
YP_004386647.1	CDS	Alide2_0715	NC_015422.1	744804	745646	R	KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family protein; TIGRFAM: Hydrolase, ortholog 1, exosortase system type 1 associated; PFAM: Alpha/beta hydrolase fold-1; hydrolase	complement(744804..745646)	Alicycliphilus denitrificans K601	10481736
YP_004386648.1	CDS	Alide2_0716	NC_015422.1	745643	746497	R	TIGRFAM: Hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: app:CAP2UW1_4344 hydrolase, exosortase system type 1 associated; hydrolase	complement(745643..746497)	Alicycliphilus denitrificans K601	10481737
YP_004386649.1	CDS	Alide2_0717	NC_015422.1	746499	746759	R	KEGG: rfr:Rfer_0698 hypothetical protein; hypothetical protein	complement(746499..746759)	Alicycliphilus denitrificans K601	10481738
YP_004386650.1	CDS	Alide2_0718	NC_015422.1	746843	748489	D	TIGRFAM: Acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; KEGG: app:CAP2UW1_1626 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase/ligase; acyl-CoA ligase	746843..748489	Alicycliphilus denitrificans K601	10481739
YP_004386651.1	CDS	Alide2_0719	NC_015422.1	748476	749681	D	TIGRFAM: Pyridoxal-dependent decarboxylase, exosortase system type 1 associated; KEGG: rfr:Rfer_0700 Orn/DAP/Arg decarboxylase 2; PFAM: Orn/DAP/Arg decarboxylase 2, C-terminal; Orn/DAP/Arg decarboxylase 2, N-terminal; pyridoxal-dependent decarboxylase	748476..749681	Alicycliphilus denitrificans K601	10481740
YP_004386652.1	CDS	Alide2_0720	NC_015422.1	749684	751765	D	TIGRFAM: Signal transduction histidine kinase, PEP-CTERM system, putative; PFAM: ATPase-like, ATP-binding domain; GAF; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: rfr:Rfer_0703 periplasmic sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase	749684..751765	Alicycliphilus denitrificans K601	10481741
YP_004386653.1	CDS	Alide2_0721	NC_015422.1	751774	753135	D	TIGRFAM: Signal transduction response regulator, PEP-CTERM system, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: rfr:Rfer_0704 two component, sigma54 specific, fis family transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family two component sigma54 specific transcriptional regulator	751774..753135	Alicycliphilus denitrificans K601	10481742
YP_004386654.1	CDS	Alide2_0722	NC_015422.1	753159	755939	D	KEGG: rfr:Rfer_0705 tetratricopeptide TPR_2; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein, putative; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; Tetratricopeptide TPR-1; PEP-CTERM system TPR-repeat lipoprotein	753159..755939	Alicycliphilus denitrificans K601	10481743
YP_004386655.1	CDS	Alide2_0723	NC_015422.1	755989	756774	D	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: rfr:Rfer_0710 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap	755989..756774	Alicycliphilus denitrificans K601	10481744
YP_004386656.1	CDS	Alide2_0724	NC_015422.1	756802	757167	R	KEGG: azo:azo0349 putative small multi-drug resistant family protein; putative small multi-drug resistant family protein	complement(756802..757167)	Alicycliphilus denitrificans K601	10481745
YP_004386657.1	CDS	Alide2_0725	NC_015422.1	757164	758612	R	PFAM: UbiA prenyltransferase; KEGG: azo:azo0348 hypothetical protein; UbiA prenyltransferase	complement(757164..758612)	Alicycliphilus denitrificans K601	10481746
YP_004386658.1	CDS	Alide2_0726	NC_015422.1	758662	759555	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_4993 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(758662..759555)	Alicycliphilus denitrificans K601	10481747
YP_004386659.1	CDS	Alide2_0727	NC_015422.1	759717	760718	D	KEGG: dac:Daci_4992 hypothetical protein; hypothetical protein	759717..760718	Alicycliphilus denitrificans K601	10481748
YP_004386660.1	CDS	Alide2_0728	NC_015422.1	760730	762007	D	KEGG: ctt:CtCNB1_3962 hypothetical protein; hypothetical protein	760730..762007	Alicycliphilus denitrificans K601	10481749
YP_004386661.1	CDS	Alide2_0729	NC_015422.1	762015	762275	R	TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: dia:Dtpsy_0625 translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; translation initiation factor IF-1	complement(762015..762275)	Alicycliphilus denitrificans K601	10481750
YP_004386662.1	CDS	Alide2_0730	NC_015422.1	762626	763279	R	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: dia:Dtpsy_0631 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase	complement(762626..763279)	Alicycliphilus denitrificans K601	10481751
YP_004386663.1	CDS	Alide2_0731	NC_015422.1	763370	764878	D	KEGG: ajs:Ajs_0653 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	763370..764878	Alicycliphilus denitrificans K601	10481752
YP_004386664.1	CDS	Alide2_0732	NC_015422.1	764975	765694	D	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; KEGG: ctt:CtCNB1_2425 FAD-binding oxidoreductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein	764975..765694	Alicycliphilus denitrificans K601	10481753
YP_004386665.1	CDS	Alide2_0733	NC_015422.1	765688	767277	R	KEGG: vap:Vapar_3422 hypothetical protein; hypothetical protein	complement(765688..767277)	Alicycliphilus denitrificans K601	10481754
YP_004386666.1	CDS	Alide2_0734	NC_015422.1	767289	767897	R	PFAM: Peptidase M15B/M15C, D,D-carboxypeptidase VanY/endolysins; Peptidoglycan binding-like; KEGG: pph:Ppha_2260 peptidase M15B and M15C dd-carboxypeptidase VanY/endolysin; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	complement(767289..767897)	Alicycliphilus denitrificans K601	10481755
YP_004386667.1	CDS	Alide2_0735	NC_015422.1	768068	768739	D	PFAM: DSBA-like thioredoxin domain; KEGG: ajs:Ajs_0654 DsbA oxidoreductase; DSBA oxidoreductase	768068..768739	Alicycliphilus denitrificans K601	10481756
YP_004386668.1	CDS	Alide2_0736	NC_015422.1	768811	769293	R	PFAM: Uncharacterised protein family CreA; KEGG: dia:Dtpsy_0634 CreA family protein; CreA family protein	complement(768811..769293)	Alicycliphilus denitrificans K601	10481757
YP_004386669.1	CDS	Alide2_0737	NC_015422.1	769290	771881	R	TIGRFAM: Cyanophycin synthetase; KEGG: dia:Dtpsy_0635 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; Mur ligase, C-terminal; cyanophycin synthetase	complement(769290..771881)	Alicycliphilus denitrificans K601	10481758
YP_004386670.1	CDS	Alide2_0738	NC_015422.1	771953	774133	R	TIGRFAM: Cyanophycin synthetase; KEGG: ctt:CtCNB1_0610 cyanophycin synthetase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; cyanophycin synthetase	complement(771953..774133)	Alicycliphilus denitrificans K601	10481759
YP_004386671.1	CDS	Alide2_0739	NC_015422.1	774383	776695	D	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: dia:Dtpsy_0637 ABC transporter related; SMART: ATPase, AAA+ type, core; Xenobiotic-transporting ATPase	774383..776695	Alicycliphilus denitrificans K601	10481760
YP_004386672.1	CDS	Alide2_0740	NC_015422.1	776710	777198	D	PFAM: Domain of unknown function DUF1854; KEGG: dia:Dtpsy_0638 hypothetical protein; hypothetical protein	776710..777198	Alicycliphilus denitrificans K601	10481761
YP_004386673.1	CDS	Alide2_0741	NC_015422.1	777339	777779	D	KEGG: dia:Dtpsy_0639 hypothetical protein; hypothetical protein	777339..777779	Alicycliphilus denitrificans K601	10481762
YP_004386674.1	CDS	Alide2_0742	NC_015422.1	777903	779957	D	TIGRFAM: Small GTP-binding protein; PFAM: Translation elongation factor EFG/EF2, domain IV; Protein synthesis factor, GTP-binding; Translation elongation factor EFG/EF2, C-terminal; KEGG: vap:Vapar_5542 elongation factor G; SMART: Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; small GTP-binding protein	777903..779957	Alicycliphilus denitrificans K601	10481763
YP_004386675.1	CDS	Alide2_0743	NC_015422.1	779971	780903	R	KEGG: vei:Veis_1630 5-nucleotidase; PFAM: 5-nucleotidase; 5'-nucleotidase	complement(779971..780903)	Alicycliphilus denitrificans K601	10481764
YP_004386676.1	CDS	Alide2_0744	NC_015422.1	780908	782137	R	KEGG: dia:Dtpsy_0642 general secretion pathway protein F; TIGRFAM: General secretion pathway protein F; PFAM: Type II secretion system F domain; general secretion pathway protein F	complement(780908..782137)	Alicycliphilus denitrificans K601	10481765
YP_004386677.1	CDS	Alide2_0745	NC_015422.1	782192	783187	R	KEGG: ajs:Ajs_0664 luciferase family protein; TIGRFAM: Luciferase family oxidoreductase, group 1; PFAM: Luciferase-like, subgroup; luciferase family oxidoreductase, group 1	complement(782192..783187)	Alicycliphilus denitrificans K601	10481766
YP_004386678.1	CDS	Alide2_0746	NC_015422.1	783376	783903	D	KEGG: ajs:Ajs_0665 hypothetical protein; hypothetical protein	783376..783903	Alicycliphilus denitrificans K601	10481767
YP_004386679.1	CDS	Alide2_0747	NC_015422.1	783913	785313	R	TIGRFAM: Type II secretion system GspE; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_0645 general secretory pathway protein E; SMART: ATPase, AAA+ type, core; general secretory pathway protein E	complement(783913..785313)	Alicycliphilus denitrificans K601	10481768
YP_004386680.1	CDS	Alide2_0748	NC_015422.1	785324	787657	R	KEGG: dia:Dtpsy_0646 general secretion pathway protein D; TIGRFAM: Type II secretion system GspD; PFAM: Type II/III secretion system; NolW-like; general secretion pathway protein D	complement(785324..787657)	Alicycliphilus denitrificans K601	10481769
YP_004386681.1	CDS	Alide2_0749	NC_015422.1	787662	788477	R	KEGG: ajs:Ajs_0668 putative general secretory pathway N transmembrane protein; putative general secretory pathway N transmembrane protein	complement(787662..788477)	Alicycliphilus denitrificans K601	10481770
YP_004386682.1	CDS	Alide2_0750	NC_015422.1	788511	789020	R	PFAM: General secretion pathway M protein; KEGG: ajs:Ajs_0669 hypothetical protein; general secretion pathway M protein	complement(788511..789020)	Alicycliphilus denitrificans K601	10481771
YP_004386683.1	CDS	Alide2_0751	NC_015422.1	789017	790249	R	PFAM: General secretion pathway L; KEGG: ajs:Ajs_0670 general secretion pathway L; general secretion pathway L	complement(789017..790249)	Alicycliphilus denitrificans K601	10481772
YP_004386684.1	CDS	Alide2_0752	NC_015422.1	790317	791294	R	KEGG: ajs:Ajs_0671 general secretion pathway protein K; general secretion pathway protein K	complement(790317..791294)	Alicycliphilus denitrificans K601	10481773
YP_004386685.1	CDS	Alide2_0753	NC_015422.1	791291	791980	R	KEGG: ajs:Ajs_0672 hypothetical protein; hypothetical protein	complement(791291..791980)	Alicycliphilus denitrificans K601	10481774
YP_004386686.1	CDS	Alide2_0754	NC_015422.1	791982	792347	R	KEGG: dia:Dtpsy_0652 general secretion pathway protein I; TIGRFAM: General secretion pathway protein I; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein I/J; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein I	complement(791982..792347)	Alicycliphilus denitrificans K601	10481775
YP_004386687.1	CDS	Alide2_0755	NC_015422.1	792616	793080	R	KEGG: dia:Dtpsy_0653 general secretion pathway protein H; manually curated; TIGRFAM: Bacterial general secretion pathway protein H; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein H	complement(792616..793080)	Alicycliphilus denitrificans K601	10481776
YP_004386688.1	CDS	Alide2_0756	NC_015422.1	793153	793560	R	KEGG: aav:Aave_0925 general secretion pathway protein G; TIGRFAM: General secretion pathway protein G; Prepilin-type cleavage/methylation, N-terminal; PFAM: Type II secretion system protein G; Prepilin-type cleavage/methylation, N-terminal; general secretion pathway protein G	complement(793153..793560)	Alicycliphilus denitrificans K601	10481777
YP_004386689.1	CDS	Alide2_0757	NC_015422.1	793661	794107	D	KEGG: dia:Dtpsy_0655 hypothetical protein; hypothetical protein	793661..794107	Alicycliphilus denitrificans K601	10481778
YP_004386690.1	CDS	Alide2_0758	NC_015422.1	794108	794674	R	KEGG: dia:Dtpsy_0656 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase	complement(794108..794674)	Alicycliphilus denitrificans K601	10481779
YP_004386691.1	CDS	Alide2_0759	NC_015422.1	794671	795489	R	PFAM: Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase; KEGG: dia:Dtpsy_0657 cobalamin-5-phosphate synthase CobS; cobalamin-5-phosphate synthase CobS	complement(794671..795489)	Alicycliphilus denitrificans K601	10481780
YP_004386692.1	CDS	Alide2_0760	NC_015422.1	795552	797117	R	KEGG: dia:Dtpsy_0658 threonine dehydratase; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; threonine dehydratase, biosynthetic	complement(795552..797117)	Alicycliphilus denitrificans K601	10481781
YP_004386693.1	CDS	Alide2_0761	NC_015422.1	797399	797848	D	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: dia:Dtpsy_0659 OsmC family protein; OsmC family protein	797399..797848	Alicycliphilus denitrificans K601	10481782
YP_004386694.1	CDS	Alide2_0762	NC_015422.1	797859	798476	R	KEGG: dia:Dtpsy_0660 putative ubiquinone biosynthesis protein; putative ubiquinone biosynthesis protein	complement(797859..798476)	Alicycliphilus denitrificans K601	10481783
YP_004386695.1	CDS	Alide2_0763	NC_015422.1	798705	799745	D	KEGG: aav:Aave_0932 porin; porin	798705..799745	Alicycliphilus denitrificans K601	10481784
YP_004386696.1	CDS	Alide2_0764	NC_015422.1	799967	801178	D	PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_0662 porin gram-negative type; porin	799967..801178	Alicycliphilus denitrificans K601	10481785
YP_004386697.1	CDS	Alide2_0765	NC_015422.1	801427	802410	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0664 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	801427..802410	Alicycliphilus denitrificans K601	10481786
YP_004386698.1	CDS	Alide2_0766	NC_015422.1	802412	803632	D	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: dia:Dtpsy_0665 amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase	802412..803632	Alicycliphilus denitrificans K601	10481787
YP_004386699.1	CDS	Alide2_0767	NC_015422.1	803710	804621	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0667 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	803710..804621	Alicycliphilus denitrificans K601	10481788
YP_004386700.1	CDS	Alide2_0768	NC_015422.1	804628	805602	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0668 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: Oligopeptide/dipeptide ABC transporter, C-terminal; ABC transporter-like; peptide ABC transporter ATPase	804628..805602	Alicycliphilus denitrificans K601	10481789
YP_004386701.1	CDS	Alide2_0769	NC_015422.1	805599	806615	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0669 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase	805599..806615	Alicycliphilus denitrificans K601	10481790
YP_004386702.1	CDS	Alide2_0770	NC_015422.1	806658	807152	D	KEGG: dia:Dtpsy_0671 PEBP family protein; TIGRFAM: YbhB/YbcL; PFAM: Phosphatidylethanolamine-binding protein PEBP; YbhB YbcL family protein	806658..807152	Alicycliphilus denitrificans K601	10481791
YP_004386703.1	CDS	Alide2_0771	NC_015422.1	807204	808049	R	PFAM: Helix-turn-helix protein RpiR; Sugar isomerase (SIS); KEGG: ajs:Ajs_0694 RpiR family transcriptional regulator; RpiR family transcriptional regulator	complement(807204..808049)	Alicycliphilus denitrificans K601	10481792
YP_004386704.1	CDS	Alide2_0772	NC_015422.1	808165	809115	D	KEGG: dia:Dtpsy_0674 transaldolase B; TIGRFAM: Transaldolase 1; PFAM: Transaldolase; transaldolase	808165..809115	Alicycliphilus denitrificans K601	10481793
YP_004386705.1	CDS	Alide2_0773	NC_015422.1	809112	810707	D	KEGG: ajs:Ajs_0697 glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase	809112..810707	Alicycliphilus denitrificans K601	10481794
YP_004386706.1	CDS	Alide2_0774	NC_015422.1	810830	812476	R	KEGG: aav:Aave_0945 chaperonin GroEL; TIGRFAM: Chaperonin Cpn60; PFAM: Chaperonin Cpn60/TCP-1; chaperonin GroEL	complement(810830..812476)	Alicycliphilus denitrificans K601	10481795
YP_004386707.1	CDS	Alide2_0775	NC_015422.1	812574	812864	R	KEGG: dac:Daci_5660 co-chaperonin GroES; PFAM: Chaperonin Cpn10; SMART: Chaperonin Cpn10; chaperonin Cpn10	complement(812574..812864)	Alicycliphilus denitrificans K601	10481796
YP_004386708.1	CDS	Alide2_0776	NC_015422.1	813066	814094	R	KEGG: ajs:Ajs_0701 cytidyltransferase-like protein; TIGRFAM: Cytidyltransferase-related; PFAM: NUDIX hydrolase domain; Cytidylyltransferase; cytidyltransferase-like domain-containing protein	complement(813066..814094)	Alicycliphilus denitrificans K601	10481797
YP_004386709.1	CDS	Alide2_0777	NC_015422.1	814108	815289	R	TIGRFAM: S-adenosylmethionine synthetase; KEGG: dia:Dtpsy_0683 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal; S-adenosylmethionine synthetase	complement(814108..815289)	Alicycliphilus denitrificans K601	10481798
YP_004386710.1	CDS	Alide2_0778	NC_015422.1	815423	816277	D	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0706 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase	815423..816277	Alicycliphilus denitrificans K601	10481799
YP_004386711.1	CDS	Alide2_0779	NC_015422.1	816274	817155	D	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: ajs:Ajs_0707 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase	816274..817155	Alicycliphilus denitrificans K601	10481800
YP_004386712.1	CDS	Alide2_0780	NC_015422.1	817196	818098	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_1352 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(817196..818098)	Alicycliphilus denitrificans K601	10481801
YP_004386713.1	CDS	Alide2_0781	NC_015422.1	818195	819175	D	KEGG: vei:Veis_1351 fis family transcriptional regulator; fis family transcriptional regulator	818195..819175	Alicycliphilus denitrificans K601	10481802
YP_004386714.1	CDS	Alide2_0782	NC_015422.1	819190	820170	D	KEGG: cti:RALTA_B1946 conserved hypothetical protein UPF0065; hypothetical protein	819190..820170	Alicycliphilus denitrificans K601	10481803
YP_004386715.1	CDS	Alide2_0783	NC_015422.1	820197	821258	D	KEGG: vei:Veis_1349 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase	820197..821258	Alicycliphilus denitrificans K601	10481804
YP_004386716.1	CDS	Alide2_0784	NC_015422.1	821258	822079	D	PFAM: Amidohydrolase 2; KEGG: bbt:BBta_3003 hypothetical protein; amidohydrolase 2	821258..822079	Alicycliphilus denitrificans K601	10481805
YP_004386717.1	CDS	Alide2_0785	NC_015422.1	822067	822759	R	TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: aav:Aave_0983 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engB	complement(822067..822759)	Alicycliphilus denitrificans K601	10481806
YP_004386718.1	CDS	Alide2_0786	NC_015422.1	822842	823480	D	PFAM: Cytochrome c, class I; KEGG: ajs:Ajs_0710 cytochrome c, class I; cytochrome c class I	822842..823480	Alicycliphilus denitrificans K601	10481807
YP_004386719.1	CDS	Alide2_0787	NC_015422.1	823609	825807	D	PFAM: Cytochrome c biogenesis protein; KEGG: dia:Dtpsy_0691 ResB family protein; ResB family protein	823609..825807	Alicycliphilus denitrificans K601	10481808
YP_004386720.1	CDS	Alide2_0788	NC_015422.1	825804	827138	D	KEGG: ajs:Ajs_0712 cytochrome c assembly protein; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB	825804..827138	Alicycliphilus denitrificans K601	10481809
YP_004386721.1	CDS	Alide2_0789	NC_015422.1	827312	828310	D	PFAM: Oxidoreductase, molybdopterin-binding domain; KEGG: dia:Dtpsy_0693 putative sulfite oxidase subunit YedY; oxidoreductase molybdopterin binding protein	827312..828310	Alicycliphilus denitrificans K601	10481810
YP_004386722.1	CDS	Alide2_0790	NC_015422.1	828310	828951	D	KEGG: dia:Dtpsy_0694 ferric reductase domain protein transmembrane component; HAMAP: Sulphoxide reductase heme-binding subunit YedZ; PFAM: Flavoprotein transmembrane component; sulfoxide reductase heme-binding subunit yedZ	828310..828951	Alicycliphilus denitrificans K601	10481811
YP_004386723.1	CDS	Alide2_0791	NC_015422.1	829037	829840	R	KEGG: dia:Dtpsy_0695 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	complement(829037..829840)	Alicycliphilus denitrificans K601	10481812
YP_004386724.1	CDS	Alide2_0792	NC_015422.1	829909	831198	R	TIGRFAM: Diaminopimelate decarboxylase; KEGG: dia:Dtpsy_0696 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2, N-terminal; Orn/DAP/Arg decarboxylase 2, C-terminal; diaminopimelate decarboxylase	complement(829909..831198)	Alicycliphilus denitrificans K601	10481813
YP_004386725.1	CDS	Alide2_0793	NC_015422.1	831195	831407	R	manually curated; KEGG: ajs:Ajs_0717 hypothetical protein; hypothetical protein	complement(831195..831407)	Alicycliphilus denitrificans K601	10481814
YP_004386726.1	CDS	Alide2_0794	NC_015422.1	831420	831749	D	TIGRFAM: Frataxin-like; HAMAP: Frataxin-like; KEGG: ajs:Ajs_0728 frataxin family protein; PFAM: Frataxin-like; protein cyaY	831420..831749	Alicycliphilus denitrificans K601	10481815
YP_004386727.1	CDS	Alide2_0795	NC_015422.1	831756	834071	R	KEGG: dia:Dtpsy_0698 penicillin-binding protein, 1A family; TIGRFAM: Penicillin-binding protein 1A; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; penicillin-binding protein, 1A family	complement(831756..834071)	Alicycliphilus denitrificans K601	10481816
YP_004386728.1	CDS	Alide2_0796	NC_015422.1	834398	835468	D	TIGRFAM: Type IV pilus assembly protein PilM; KEGG: ajs:Ajs_0730 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM	834398..835468	Alicycliphilus denitrificans K601	10481817
YP_004386729.1	CDS	Alide2_0797	NC_015422.1	835465	836076	D	PFAM: Fimbrial assembly; KEGG: ajs:Ajs_0731 fimbrial assembly family protein; Fimbrial assembly family protein	835465..836076	Alicycliphilus denitrificans K601	10481818
YP_004386730.1	CDS	Alide2_0798	NC_015422.1	836073	836756	D	KEGG: ajs:Ajs_0732 pilus assembly protein, PilO; pilus assembly protein, PilO	836073..836756	Alicycliphilus denitrificans K601	10481819
YP_004386731.1	CDS	Alide2_0799	NC_015422.1	836753	837310	D	PFAM: Pilus assembly protein PilP; KEGG: dia:Dtpsy_0702 pilus assembly protein PilP; Pilus assembly protein PilP	836753..837310	Alicycliphilus denitrificans K601	10481820
YP_004386732.1	CDS	Alide2_0800	NC_015422.1	837307	839448	D	TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; KEGG: dia:Dtpsy_0703 type IV pilus secretin PilQ; SMART: Secretin/TonB, short N-terminal; type IV pilus secretin PilQ	837307..839448	Alicycliphilus denitrificans K601	10481821
YP_004386733.1	CDS	Alide2_0801	NC_015422.1	839470	841017	D	PFAM: Putative Ig; KEGG: eba:ebA2288 hypothetical protein; Ig family protein	839470..841017	Alicycliphilus denitrificans K601	10481822
YP_004386734.1	CDS	Alide2_0802	NC_015422.1	841141	842259	D	PFAM: 3-dehydroquinate synthase AroB; TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase AroB, subgroup; KEGG: dia:Dtpsy_0704 3-dehydroquinate synthase; 3-dehydroquinate synthase	841141..842259	Alicycliphilus denitrificans K601	10481823
YP_004386735.1	CDS	Alide2_0803	NC_015422.1	842317	843489	D	SMART: Metal-dependent phosphohydrolase, HD domain; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: ajs:Ajs_0736 deoxyguanosinetriphosphate triphosphohydrolase-like protein; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase, type 2; PFAM: Metal-dependent phosphohydrolase, HD subdomain; deoxyguanosinetriphosphate triphosphohydrolase-like protein	842317..843489	Alicycliphilus denitrificans K601	10481824
YP_004386736.1	CDS	Alide2_0804	NC_015422.1	843521	844141	D	PFAM: Protein of unknown function DUF1415; KEGG: dia:Dtpsy_0706 protein of unknown function DUF1415; hypothetical protein	843521..844141	Alicycliphilus denitrificans K601	10481825
YP_004386737.1	CDS	Alide2_0805	NC_015422.1	844138	845010	D	KEGG: dia:Dtpsy_0707 hypothetical protein; hypothetical protein	844138..845010	Alicycliphilus denitrificans K601	10481826
YP_004386738.1	CDS	Alide2_0806	NC_015422.1	845126	846631	R	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: xtr:100496453 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase	complement(845126..846631)	Alicycliphilus denitrificans K601	10481827
YP_004386739.1	CDS	Alide2_0807	NC_015422.1	846646	847863	R	KEGG: hse:Hsero_3068 branched-chain amino acid ABC transporter periplasmic protein; branched-chain amino acid ABC transporter substrate-binding protein	complement(846646..847863)	Alicycliphilus denitrificans K601	10481828
YP_004386740.1	CDS	Alide2_0809	NC_015422.1	848989	849699	D	PFAM: Transposase IS200-like; KEGG: vap:Vapar_1151 protein of unknown function DUF1568; transposase IS200 family protein	848989..849699	Alicycliphilus denitrificans K601	10481830
YP_004386741.1	CDS	Alide2_0810	NC_015422.1	849869	854602	D	KEGG: ajs:Ajs_0741 glutamate synthase (NADH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; glutamate synthase (ferredoxin)	849869..854602	Alicycliphilus denitrificans K601	10481831
YP_004386742.1	CDS	Alide2_0811	NC_015422.1	854643	856121	D	TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 1; KEGG: dia:Dtpsy_0710 glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; glutamate synthase, NADH/NADPH, small subunit	854643..856121	Alicycliphilus denitrificans K601	10481832
YP_004386743.1	CDS	Alide2_0812	NC_015422.1	856326	857123	D	KEGG: ajs:Ajs_0743 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	856326..857123	Alicycliphilus denitrificans K601	10481833
YP_004386744.1	CDS	Alide2_0813	NC_015422.1	857185	857841	D	KEGG: ajs:Ajs_0744 polar amino acid ABC transporter, inner membrane subunit; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	857185..857841	Alicycliphilus denitrificans K601	10481834
YP_004386745.1	CDS	Alide2_0814	NC_015422.1	857822	858601	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0713 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	857822..858601	Alicycliphilus denitrificans K601	10481835
YP_004386746.1	CDS	Alide2_0815	NC_015422.1	858625	859929	D	KEGG: vei:Veis_4017 hypothetical protein; hypothetical protein	858625..859929	Alicycliphilus denitrificans K601	10481836
YP_004386747.1	CDS	Alide2_0816	NC_015422.1	860031	860990	R	HAMAP: Spermine synthase; KEGG: ajs:Ajs_0746 spermidine synthase; PFAM: Spermine synthase; spermidine synthase	complement(860031..860990)	Alicycliphilus denitrificans K601	10481837
YP_004386748.1	CDS	Alide2_0817	NC_015422.1	860990	861400	R	KEGG: dia:Dtpsy_0715 S-adenosylmethionine decarboxylase proenzyme; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase proenzyme	complement(860990..861400)	Alicycliphilus denitrificans K601	10481838
YP_004386749.1	CDS	Alide2_0818	NC_015422.1	861767	862615	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0716 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	861767..862615	Alicycliphilus denitrificans K601	10481839
YP_004386750.1	CDS	Alide2_0819	NC_015422.1	862612	863394	D	KEGG: dia:Dtpsy_0717 protein of unknown function DUF140; TIGRFAM: Domain of unknown function DUF140; PFAM: Domain of unknown function DUF140; hypothetical protein	862612..863394	Alicycliphilus denitrificans K601	10481840
YP_004386751.1	CDS	Alide2_0820	NC_015422.1	863429	863917	D	PFAM: Mammalian cell entry-related; KEGG: dia:Dtpsy_0718 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein	863429..863917	Alicycliphilus denitrificans K601	10481841
YP_004386752.1	CDS	Alide2_0821	NC_015422.1	863914	864654	D	PFAM: VacJ-like lipoprotein; KEGG: ajs:Ajs_0751 VacJ family lipoprotein; VacJ family lipoprotein	863914..864654	Alicycliphilus denitrificans K601	10481842
YP_004386753.1	CDS	Alide2_0822	NC_015422.1	864772	865434	D	PFAM: Toluene tolerance Ttg2; KEGG: dia:Dtpsy_0720 toluene tolerance family protein; toluene tolerance family protein	864772..865434	Alicycliphilus denitrificans K601	10481843
YP_004386754.1	CDS	Alide2_0823	NC_015422.1	865452	865724	D	KEGG: dia:Dtpsy_0721 sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter/antisigma-factor antagonist STAS	865452..865724	Alicycliphilus denitrificans K601	10481844
YP_004386755.1	CDS	Alide2_0824	NC_015422.1	865788	867083	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-4; KEGG: gpb:HDN1F_11000 hypothetical protein; SMART: Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase	865788..867083	Alicycliphilus denitrificans K601	10481845
YP_004386756.1	CDS	Alide2_0825	NC_015422.1	867165	868085	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_0722 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase	867165..868085	Alicycliphilus denitrificans K601	10481846
YP_004386757.1	CDS	Alide2_0826	NC_015422.1	868082	868837	D	PFAM: ABC-2 type transporter; KEGG: aav:Aave_1020 ABC-2 type transporter; ABC transporter	868082..868837	Alicycliphilus denitrificans K601	10481847
YP_004386758.1	CDS	Alide2_0827	NC_015422.1	868851	869099	D	PFAM: BolA protein; KEGG: dia:Dtpsy_0724 BolA family protein; BolA family protein	868851..869099	Alicycliphilus denitrificans K601	10481848
YP_004386759.1	CDS	Alide2_0828	NC_015422.1	869124	870398	D	PFAM: Enolpyruvate transferase domain; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: ctt:CtCNB1_0710 UDP-N-acetylglucosamine; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	869124..870398	Alicycliphilus denitrificans K601	10481849
YP_004386760.1	CDS	Alide2_0829	NC_015422.1	870395	871045	D	TIGRFAM: ATP phosphoribosyltransferase, catalytic domain; KEGG: dia:Dtpsy_0726 ATP phosphoribosyltransferase catalytic subunit; PFAM: ATP phosphoribosyltransferase, catalytic domain; ATP phosphoribosyltransferase	870395..871045	Alicycliphilus denitrificans K601	10481850
YP_004386761.1	CDS	Alide2_0830	NC_015422.1	871050	872366	D	TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; KEGG: aav:Aave_1024 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; histidinol dehydrogenase	871050..872366	Alicycliphilus denitrificans K601	10481851
YP_004386762.1	CDS	Alide2_0833	NC_015422.1	873231	874349	D	PFAM: Aminotransferase, class I/classII; TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: dia:Dtpsy_0729 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase	873231..874349	Alicycliphilus denitrificans K601	10481853
YP_004386763.1	CDS	Alide2_0834	NC_015422.1	874346	874978	D	KEGG: dia:Dtpsy_0730 imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; Imidazoleglycerol-phosphate dehydratase	874346..874978	Alicycliphilus denitrificans K601	10481854
YP_004386764.1	CDS	Alide2_0835	NC_015422.1	875029	875697	D	KEGG: dia:Dtpsy_0731 imidazole glycerol phosphate synthase subunit HisH; TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; PFAM: Glutamine amidotransferase class-I, C-terminal; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	875029..875697	Alicycliphilus denitrificans K601	10481855
YP_004386765.1	CDS	Alide2_0836	NC_015422.1	875750	876493	D	TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA; KEGG: ajs:Ajs_0765 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	875750..876493	Alicycliphilus denitrificans K601	10481856
YP_004386766.1	CDS	Alide2_0837	NC_015422.1	876500	877696	R	PFAM: Spherulation-specific family 4; KEGG: ajs:Ajs_0766 hypothetical protein; Spherulation-specific family 4	complement(876500..877696)	Alicycliphilus denitrificans K601	10481857
YP_004386767.1	CDS	Alide2_0838	NC_015422.1	877764	879137	R	KEGG: ajs:Ajs_0767 putative transmembrane protein; putative transmembrane protein	complement(877764..879137)	Alicycliphilus denitrificans K601	10481858
YP_004386768.1	CDS	Alide2_0839	NC_015422.1	879137	880669	R	PFAM: Glycosyl transferase, group 1; KEGG: ajs:Ajs_0768 glycosyl transferase, group 1; group 1 glycosyl transferase	complement(879137..880669)	Alicycliphilus denitrificans K601	10481859
YP_004386769.1	CDS	Alide2_0840	NC_015422.1	880666	881667	R	KEGG: ajs:Ajs_0769 putative transmembrane protein; putative transmembrane protein	complement(880666..881667)	Alicycliphilus denitrificans K601	10481860
YP_004386770.1	CDS	Alide2_0841	NC_015422.1	881660	883054	R	KEGG: ajs:Ajs_0770 putative transmembrane protein; putative transmembrane protein	complement(881660..883054)	Alicycliphilus denitrificans K601	10481861
YP_004386771.1	CDS	Alide2_0842	NC_015422.1	883062	883616	R	KEGG: ajs:Ajs_0771 putative lipoprotein; hypothetical protein	complement(883062..883616)	Alicycliphilus denitrificans K601	10481862
YP_004386772.1	CDS	Alide2_0843	NC_015422.1	883638	887441	R	PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0772 TPR repeat-containing protein; hypothetical protein	complement(883638..887441)	Alicycliphilus denitrificans K601	10481863
YP_004386773.1	CDS	Alide2_0844	NC_015422.1	887488	890319	R	PFAM: TM1410 hypothetical-related protein; KEGG: ajs:Ajs_0773 polysaccharide deacetylase; hypothetical protein	complement(887488..890319)	Alicycliphilus denitrificans K601	10481864
YP_004386774.1	CDS	Alide2_0845	NC_015422.1	890492	891508	D	TIGRFAM: UDP-glucose 4-epimerase; KEGG: ajs:Ajs_0774 UDP-galactose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase	890492..891508	Alicycliphilus denitrificans K601	10481865
YP_004386775.1	CDS	Alide2_0846	NC_015422.1	891549	892328	D	TIGRFAM: Histidine biosynthesis, HisF; KEGG: dia:Dtpsy_0738 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; imidazoleglycerol phosphate synthase, cyclase subunit	891549..892328	Alicycliphilus denitrificans K601	10481866
YP_004386776.1	CDS	Alide2_0847	NC_015422.1	892435	892824	D	KEGG: aav:Aave_1048 phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase	892435..892824	Alicycliphilus denitrificans K601	10481867
YP_004386777.1	CDS	Alide2_0848	NC_015422.1	892829	893206	D	KEGG: dia:Dtpsy_0740 phosphoribosyl-ATP pyrophosphatase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; phosphoribosyl-ATP diphosphatase	892829..893206	Alicycliphilus denitrificans K601	10481868
YP_004386778.1	CDS	Alide2_0849	NC_015422.1	893203	893589	D	KEGG: dia:Dtpsy_0741 putative transmembrane protein; putative transmembrane protein	893203..893589	Alicycliphilus denitrificans K601	10481869
YP_004386779.1	CDS	Alide2_0850	NC_015422.1	893582	894610	D	PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_0779 patatin; Patatin	893582..894610	Alicycliphilus denitrificans K601	10481870
YP_004386780.1	CDS	Alide2_0851	NC_015422.1	894649	895005	D	KEGG: dia:Dtpsy_0743 histidine triad (HIT) protein; histidine triad (HIT) protein	894649..895005	Alicycliphilus denitrificans K601	10481871
YP_004386781.1	CDS	Alide2_0852	NC_015422.1	895106	895354	D	KEGG: ajs:Ajs_0781 twin arginine translocase protein A; TIGRFAM: Twin-arginine translocation protein TatA/E; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit	895106..895354	Alicycliphilus denitrificans K601	10481872
YP_004386782.1	CDS	Alide2_0853	NC_015422.1	895380	895859	D	KEGG: dia:Dtpsy_0745 sec-independent translocase; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein MttA/Hcf106; twin-arginine translocation protein, TatB subunit	895380..895859	Alicycliphilus denitrificans K601	10481873
YP_004386783.1	CDS	Alide2_0854	NC_015422.1	895925	896713	D	KEGG: dia:Dtpsy_0746 sec-independent protein translocase, TatC subunit; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase, TatC subunit	895925..896713	Alicycliphilus denitrificans K601	10481874
YP_004386784.1	CDS	Alide2_0855	NC_015422.1	896787	897926	R	PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: ajs:Ajs_0784 peptidase S1 and S6, chymotrypsin/Hap; SMART: PDZ/DHR/GLGF; HtrA2 peptidase	complement(896787..897926)	Alicycliphilus denitrificans K601	10481875
YP_004386785.1	CDS	Alide2_0856	NC_015422.1	898017	898769	D	KEGG: dia:Dtpsy_0749 protein of unknown function DUF34; TIGRFAM: NGG1p interacting factor 3, NIF3; PFAM: NGG1p interacting factor 3, NIF3; NGG1p interacting factor 3 protein, NIF3	898017..898769	Alicycliphilus denitrificans K601	10481876
YP_004386786.1	CDS	Alide2_0857	NC_015422.1	898832	899884	D	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: ajs:Ajs_0787 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase	898832..899884	Alicycliphilus denitrificans K601	10481877
YP_004386787.1	CDS	Alide2_0858	NC_015422.1	899951	900379	R	KEGG: dac:Daci_5504 large-conductance mechanosensitive channel; TIGRFAM: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein	complement(899951..900379)	Alicycliphilus denitrificans K601	10481878
YP_004386788.1	CDS	Alide2_0859	NC_015422.1	900505	901104	D	TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; ubiquinol-cytochrome c reductase, iron-sulfur subunit	900505..901104	Alicycliphilus denitrificans K601	10481879
YP_004386789.1	CDS	Alide2_0860	NC_015422.1	901120	902541	D	PFAM: Cytochrome b/b6, C-terminal; Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_0753 cytochrome b/b6 domain protein; cytochrome b/b6 domain-containing protein	901120..902541	Alicycliphilus denitrificans K601	10481880
YP_004386790.1	CDS	Alide2_0861	NC_015422.1	902558	903313	D	KEGG: ajs:Ajs_0791 cytochrome c1; manually curated; PFAM: Cytochrome c1; cytochrome c1	902558..903313	Alicycliphilus denitrificans K601	10481881
YP_004386791.1	CDS	Alide2_0862	NC_015422.1	903412	904023	D	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_0755 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein	903412..904023	Alicycliphilus denitrificans K601	10481882
YP_004386792.1	CDS	Alide2_0863	NC_015422.1	904056	904580	D	PFAM: Stringent starvation protein B; KEGG: dia:Dtpsy_0756 stringent starvation protein B; Stringent starvation protein B	904056..904580	Alicycliphilus denitrificans K601	10481883
YP_004386793.1	CDS	Alide2_0864	NC_015422.1	904763	905062	R	KEGG: dia:Dtpsy_0757 hypothetical protein; hypothetical protein	complement(904763..905062)	Alicycliphilus denitrificans K601	10481885
YP_004386794.1	CDS	Alide2_0865	NC_015422.1	905304	908063	D	SMART: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; TIGRFAM: SecA protein; KEGG: dia:Dtpsy_0759 preprotein translocase subunit SecA; HAMAP: SecA protein; PFAM: SecA DEAD-like, N-terminal; SecA preprotein, cross-linking domain; SecA Wing/Scaffold; SEC-C motif; protein translocase subunit secA	905304..908063	Alicycliphilus denitrificans K601	10481886
YP_004386795.1	CDS	Alide2_0866	NC_015422.1	908139	909368	D	PFAM: Arginine biosynthesis protein ArgJ; TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: ajs:Ajs_0797 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; arginine biosynthesis bifunctional protein ArgJ	908139..909368	Alicycliphilus denitrificans K601	10481887
YP_004386796.1	CDS	Alide2_0867	NC_015422.1	909423	910295	D	KEGG: dia:Dtpsy_0761 protein of unknown function DUF815; PFAM: Domain of unknown function DUF815; SMART: ATPase, AAA+ type, core; hypothetical protein	909423..910295	Alicycliphilus denitrificans K601	10481888
YP_004386797.1	CDS	Alide2_0868	NC_015422.1	910292	910717	D	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0762 NUDIX hydrolase; NUDIX hydrolase	910292..910717	Alicycliphilus denitrificans K601	10481889
YP_004386798.1	CDS	Alide2_0869	NC_015422.1	910780	910986	R	PFAM: Uncharacterised protein family, zinc-binding; KEGG: dia:Dtpsy_0763 protein of unknown function DUF329; hypothetical protein	complement(910780..910986)	Alicycliphilus denitrificans K601	10481890
YP_004386799.1	CDS	Alide2_0870	NC_015422.1	910988	911743	R	PFAM: Uncharacterised protein family UPF0289; KEGG: dia:Dtpsy_0764 hypothetical protein; hypothetical protein	complement(910988..911743)	Alicycliphilus denitrificans K601	10481891
YP_004386800.1	CDS	Alide2_0871	NC_015422.1	911826	912440	R	TIGRFAM: Dephospho-CoA kinase; KEGG: ajs:Ajs_0802 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase	complement(911826..912440)	Alicycliphilus denitrificans K601	10481892
YP_004386801.1	CDS	Alide2_0872	NC_015422.1	912461	913339	R	KEGG: dia:Dtpsy_0766 prepilin peptidase; PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; Prepilin peptidase	complement(912461..913339)	Alicycliphilus denitrificans K601	10481893
YP_004386802.1	CDS	Alide2_0873	NC_015422.1	913339	914556	R	PFAM: Type II secretion system F domain; KEGG: ajs:Ajs_0804 type II secretion system protein; type II secretion system F domain-containing protein	complement(913339..914556)	Alicycliphilus denitrificans K601	10481894
YP_004386803.1	CDS	Alide2_0874	NC_015422.1	914578	916317	R	TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: ajs:Ajs_0805 type IV-A pilus assembly ATPase PilB; SMART: ATPase, AAA+ type, core; type IV-A pilus assembly ATPase PilB	complement(914578..916317)	Alicycliphilus denitrificans K601	10481895
YP_004386804.1	CDS	Alide2_0875	NC_015422.1	916693	917784	D	KEGG: ajs:Ajs_0807 phage integrase family protein; manually curated; PFAM: Integrase, catalytic core, phage; integrase family protein	916693..917784	Alicycliphilus denitrificans K601	10481896
YP_004386805.1	CDS	Alide2_0876	NC_015422.1	918106	918597	D	KEGG: vap:Vapar_5848 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	918106..918597	Alicycliphilus denitrificans K601	10481897
YP_004386806.1	CDS	Alide2_0877	NC_015422.1	918594	919250	D	PFAM: Protein of unknown function DUF1814; KEGG: vap:Vapar_5847 hypothetical protein; hypothetical protein	918594..919250	Alicycliphilus denitrificans K601	10481898
YP_004386807.1	CDS	Alide2_0878	NC_015422.1	919394	920080	D	KEGG: tbd:Tbd_1344 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	919394..920080	Alicycliphilus denitrificans K601	10481899
YP_004386808.1	CDS	Alide2_0879	NC_015422.1	920077	920622	D	KEGG: pol:Bpro_0676 hypothetical protein; hypothetical protein	920077..920622	Alicycliphilus denitrificans K601	10481900
YP_004386809.1	CDS	Alide2_0881	NC_015422.1	921406	922209	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(921406..922209)	Alicycliphilus denitrificans K601	10481902
YP_004386810.1	CDS	Alide2_0882	NC_015422.1	922199	923725	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(922199..923725)	Alicycliphilus denitrificans K601	10481903
YP_004386811.1	CDS	Alide2_0883	NC_015422.1	923884	924774	R	KEGG: dac:Daci_4208 hypothetical protein; hypothetical protein	complement(923884..924774)	Alicycliphilus denitrificans K601	10481904
YP_004386812.1	CDS	Alide2_0884	NC_015422.1	924906	926075	R	KEGG: ajs:Ajs_3614 phage integrase family protein; phage integrase family protein	complement(924906..926075)	Alicycliphilus denitrificans K601	10481905
YP_004386813.1	CDS	Alide2_0886	NC_015422.1	926605	927519	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(926605..927519)	Alicycliphilus denitrificans K601	10481907
YP_004386814.1	CDS	Alide2_0887	NC_015422.1	927516	927839	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(927516..927839)	Alicycliphilus denitrificans K601	10481908
YP_004386815.1	CDS	Alide2_0888	NC_015422.1	928139	929188	R	KEGG: ajs:Ajs_0840 dimethylallyltranstransferase; PFAM: Polyprenyl synthetase; trans-hexaprenyltranstransferase	complement(928139..929188)	Alicycliphilus denitrificans K601	10481910
YP_004386816.1	CDS	Alide2_0889	NC_015422.1	929295	929606	D	TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: ajs:Ajs_0841 50S ribosomal protein L21; PFAM: Ribosomal protein L21; 50S ribosomal protein L21	929295..929606	Alicycliphilus denitrificans K601	10481911
YP_004386817.1	CDS	Alide2_0890	NC_015422.1	929622	929879	D	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: dia:Dtpsy_0771 50S ribosomal protein L27; PFAM: Ribosomal protein L27; 50S ribosomal protein L27	929622..929879	Alicycliphilus denitrificans K601	10481912
YP_004386818.1	CDS	Alide2_0891	NC_015422.1	930005	931078	D	TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTP-binding protein Obg/CgtA; KEGG: ajs:Ajs_0843 GTPase ObgE; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTPase obg	930005..931078	Alicycliphilus denitrificans K601	10481913
YP_004386819.1	CDS	Alide2_0892	NC_015422.1	931143	932282	D	TIGRFAM: Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; KEGG: dia:Dtpsy_0773 gamma-glutamyl kinase; SMART: Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase	931143..932282	Alicycliphilus denitrificans K601	10481914
YP_004386820.1	CDS	Alide2_0893	NC_015422.1	932306	932980	R	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0774 dinucleoside polyphosphate hydrolase; NUDIX hydrolase	complement(932306..932980)	Alicycliphilus denitrificans K601	10481915
YP_004386821.1	CDS	Alide2_0894	NC_015422.1	933082	934827	D	TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase, class IIa, bacterial; KEGG: dia:Dtpsy_0775 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; YbaK/aminoacyl-tRNA synthetase-associated domain; Anticodon-binding; Prolyl-tRNA synthetase	933082..934827	Alicycliphilus denitrificans K601	10481916
YP_004386822.1	CDS	Alide2_0895	NC_015422.1	934824	935468	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_0847 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	934824..935468	Alicycliphilus denitrificans K601	10481917
YP_004386823.1	CDS	Alide2_0896	NC_015422.1	935444	936778	R	PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; KEGG: dia:Dtpsy_0777 protein of unknown function DUF21; hypothetical protein	complement(935444..936778)	Alicycliphilus denitrificans K601	10481918
YP_004386824.1	CDS	Alide2_0897	NC_015422.1	936822	937829	R	KEGG: aav:Aave_3667 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein	complement(936822..937829)	Alicycliphilus denitrificans K601	10481919
YP_004386825.1	CDS	Alide2_0898	NC_015422.1	937970	938302	R	KEGG: dia:Dtpsy_0778 glutaredoxin-like protein; TIGRFAM: Monothiol glutaredoxin-related; PFAM: Glutaredoxin; glutaredoxin-like protein	complement(937970..938302)	Alicycliphilus denitrificans K601	10481920
YP_004386826.1	CDS	Alide2_0899	NC_015422.1	938359	939204	R	TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; KEGG: ajs:Ajs_0850 HemK family modification methylase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase	complement(938359..939204)	Alicycliphilus denitrificans K601	10481921
YP_004386827.1	CDS	Alide2_0900	NC_015422.1	939248	940363	R	SMART: Peptide chain release factor; TIGRFAM: Peptide chain release factor 1; KEGG: ajs:Ajs_0851 peptide chain release factor 1; HAMAP: Peptide chain release factor 1; PFAM: Peptide chain release factor class I/class II; Peptide chain release factor; peptide chain release factor 1	complement(939248..940363)	Alicycliphilus denitrificans K601	10481922
YP_004386828.1	CDS	Alide2_0901	NC_015422.1	940432	941745	R	KEGG: dia:Dtpsy_0781 glutamyl-tRNA reductase; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; glutamyl-tRNA reductase	complement(940432..941745)	Alicycliphilus denitrificans K601	10481923
YP_004386829.1	CDS	Alide2_0902	NC_015422.1	941820	942095	D	KEGG: dia:Dtpsy_0782 hypothetical protein; hypothetical protein	941820..942095	Alicycliphilus denitrificans K601	10481924
YP_004386830.1	CDS	Alide2_0903	NC_015422.1	942212	943105	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0783 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(942212..943105)	Alicycliphilus denitrificans K601	10481925
YP_004386831.1	CDS	Alide2_0904	NC_015422.1	943231	944214	D	KEGG: ajs:Ajs_0855 hypothetical protein; hypothetical protein	943231..944214	Alicycliphilus denitrificans K601	10481926
YP_004386832.1	CDS	Alide2_0905	NC_015422.1	944214	945116	D	PFAM: N-formylglutamate amidohydrolase; KEGG: ajs:Ajs_0856 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase	944214..945116	Alicycliphilus denitrificans K601	10481927
YP_004386833.1	CDS	Alide2_0906	NC_015422.1	945160	947592	R	PFAM: Mechanosensitive ion channel MscS; Protein of unknown function DUF3772; KEGG: ajs:Ajs_0857 MscS mechanosensitive ion channel; MscS Mechanosensitive ion channel	complement(945160..947592)	Alicycliphilus denitrificans K601	10481928
YP_004386834.1	CDS	Alide2_0907	NC_015422.1	947621	948370	R	KEGG: dia:Dtpsy_0787 glycerophosphodiester phosphodiesterase; PFAM: Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase	complement(947621..948370)	Alicycliphilus denitrificans K601	10481929
YP_004386835.1	CDS	Alide2_0908	NC_015422.1	948377	949384	R	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ctt:CtCNB1_0786 sn-glycerol-3-phosphate transport ATP-binding protein; SMART: ATPase, AAA+ type, core; glycerol-3-phosphate-transporting ATPase	complement(948377..949384)	Alicycliphilus denitrificans K601	10481930
YP_004386836.1	CDS	Alide2_0909	NC_015422.1	949445	950293	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0789 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(949445..950293)	Alicycliphilus denitrificans K601	10481931
YP_004386837.1	CDS	Alide2_0910	NC_015422.1	950301	951182	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ctt:CtCNB1_0788 sn-glycerol-3-phosphate transport systempermease protein UgpA; ABC transporter permease	complement(950301..951182)	Alicycliphilus denitrificans K601	10481932
YP_004386838.1	CDS	Alide2_0911	NC_015422.1	951253	952566	R	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dia:Dtpsy_0791 extracellular solute-binding protein family 1; family 1 extracellular solute-binding protein	complement(951253..952566)	Alicycliphilus denitrificans K601	10481933
YP_004386839.1	CDS	Alide2_0912	NC_015422.1	952898	954127	D	KEGG: ajs:Ajs_0863 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; Amino acid-binding ACT; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase	952898..954127	Alicycliphilus denitrificans K601	10481934
YP_004386840.1	CDS	Alide2_0913	NC_015422.1	954249	958166	D	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich domain; KEGG: dia:Dtpsy_0793 FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein	954249..958166	Alicycliphilus denitrificans K601	10481935
YP_004386841.1	CDS	Alide2_0914	NC_015422.1	958163	958615	D	PFAM: Histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein; histidine triad (HIT) protein	958163..958615	Alicycliphilus denitrificans K601	10481936
YP_004386842.1	CDS	Alide2_0915	NC_015422.1	958692	959111	D	PFAM: Gamma-butyrobetaine dioxygenase/Trimethyllysine dioxygenase, N-terminal; KEGG: dia:Dtpsy_0795 protein of unknown function DUF971; hypothetical protein	958692..959111	Alicycliphilus denitrificans K601	10481937
YP_004386843.1	CDS	Alide2_0916	NC_015422.1	959189	959920	D	KEGG: dia:Dtpsy_0796 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: UbiE/COQ5 methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase	959189..959920	Alicycliphilus denitrificans K601	10481938
YP_004386844.1	CDS	Alide2_0917	NC_015422.1	959962	960960	D	KEGG: dia:Dtpsy_0797 import inner membrane translocase subunit Tim44; PFAM: Membrane transporter, Tim44-related/Ribosomal protein L45; SMART: Membrane transporter, Tim44-related/Ribosomal protein L45; import inner membrane translocase subunit Tim44	959962..960960	Alicycliphilus denitrificans K601	10481939
YP_004386845.1	CDS	Alide2_0918	NC_015422.1	961035	961595	D	KEGG: dia:Dtpsy_0798 hypothetical protein; hypothetical protein	961035..961595	Alicycliphilus denitrificans K601	10481940
YP_004386846.1	CDS	Alide2_0919	NC_015422.1	961592	963157	D	KEGG: dia:Dtpsy_0799 putative ubiquinone biosynthesis protein UbiB; TIGRFAM: Probable ubiquinone biosynthesis protein UbiB; PFAM: ABC-1; 2-polyprenylphenol 6-hydroxylase	961592..963157	Alicycliphilus denitrificans K601	10481941
YP_004386847.1	CDS	Alide2_0920	NC_015422.1	963209	964660	D	PFAM: Sodium/solute symporter; KEGG: dia:Dtpsy_0800 Na+/solute symporter; Na+/solute symporter	963209..964660	Alicycliphilus denitrificans K601	10481942
YP_004386848.1	CDS	Alide2_0921	NC_015422.1	964723	965004	D	SMART: Regulatory protein, FmdB, putative; manually curated; TIGRFAM: Regulatory protein, FmdB, putative; KEGG: dia:Dtpsy_0801 regulatory protein, FmdB family; PFAM: Regulatory protein, FmdB, putative; regulatory protein, FmdB family	964723..965004	Alicycliphilus denitrificans K601	10481943
YP_004386849.1	CDS	Alide2_0922	NC_015422.1	965018	965641	D	PFAM: Protein of unknown function DUF502; KEGG: dia:Dtpsy_0802 protein of unknown function DUF502; hypothetical protein	965018..965641	Alicycliphilus denitrificans K601	10481944
YP_004386850.1	CDS	Alide2_0923	NC_015422.1	965742	967541	D	TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; KEGG: dia:Dtpsy_0803 aspartyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; aspartyl-tRNA synthetase	965742..967541	Alicycliphilus denitrificans K601	10481945
YP_004386851.1	CDS	Alide2_0924	NC_015422.1	967603	968049	D	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_0805 NUDIX hydrolase; NUDIX hydrolase	967603..968049	Alicycliphilus denitrificans K601	10481946
YP_004386852.1	CDS	Alide2_0925	NC_015422.1	968052	968813	D	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dia:Dtpsy_0806 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase	968052..968813	Alicycliphilus denitrificans K601	10481947
YP_004386853.1	CDS	Alide2_0926	NC_015422.1	968956	970185	D	KEGG: dia:Dtpsy_0807 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase	968956..970185	Alicycliphilus denitrificans K601	10481948
YP_004386854.1	CDS	Alide2_0927	NC_015422.1	970290	971015	D	KEGG: dia:Dtpsy_0808 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; GTP cyclohydrolase I	970290..971015	Alicycliphilus denitrificans K601	10481949
YP_004386855.1	CDS	Alide2_0928	NC_015422.1	971017	971439	D	PFAM: BLUF; KEGG: dia:Dtpsy_0809 BLUF domain protein; BLUF domain-containing protein	971017..971439	Alicycliphilus denitrificans K601	10481950
YP_004386856.1	CDS	Alide2_0929	NC_015422.1	971661	972542	D	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_0810 protein of unknown function DUF6 transmembrane; hypothetical protein	971661..972542	Alicycliphilus denitrificans K601	10481951
YP_004386857.1	CDS	Alide2_0930	NC_015422.1	972572	974392	D	KEGG: dar:Daro_2490 sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; histidine kinase	972572..974392	Alicycliphilus denitrificans K601	10481952
YP_004386858.1	CDS	Alide2_0931	NC_015422.1	974389	975018	D	KEGG: dar:Daro_2491 LuxR response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	974389..975018	Alicycliphilus denitrificans K601	10481953
YP_004386859.1	CDS	Alide2_0932	NC_015422.1	975127	976164	R	PFAM: Cytochrome c, class I; KEGG: azo:azo2669 cytochrome c family protein; cytochrome c class I	complement(975127..976164)	Alicycliphilus denitrificans K601	10481954
YP_004386860.1	CDS	Alide2_0933	NC_015422.1	976300	977157	D	KEGG: aav:Aave_3628 hypothetical protein; hypothetical protein	976300..977157	Alicycliphilus denitrificans K601	10481955
YP_004386861.1	CDS	Alide2_0934	NC_015422.1	977309	977920	R	KEGG: dia:Dtpsy_0813 hypothetical protein; hypothetical protein	complement(977309..977920)	Alicycliphilus denitrificans K601	10481956
YP_004386862.1	CDS	Alide2_0935	NC_015422.1	978020	978676	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_0885 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA	978020..978676	Alicycliphilus denitrificans K601	10481957
YP_004386863.1	CDS	Alide2_0936	NC_015422.1	978737	980143	R	PFAM: Amidase; KEGG: dia:Dtpsy_0815 amidase; amidase	complement(978737..980143)	Alicycliphilus denitrificans K601	10481958
YP_004386864.1	CDS	Alide2_0937	NC_015422.1	980140	981630	R	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_0816 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein	complement(980140..981630)	Alicycliphilus denitrificans K601	10481959
YP_004386865.1	CDS	Alide2_0938	NC_015422.1	981736	982602	R	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_0817 ABC transporter related; SMART: ATPase, AAA+ type, core; Nickel-transporting ATPase	complement(981736..982602)	Alicycliphilus denitrificans K601	10481960
YP_004386866.1	CDS	Alide2_0939	NC_015422.1	982599	983573	R	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: dia:Dtpsy_0818 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase	complement(982599..983573)	Alicycliphilus denitrificans K601	10481961
YP_004386867.1	CDS	Alide2_0940	NC_015422.1	983847	984710	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0819 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(983847..984710)	Alicycliphilus denitrificans K601	10481962
YP_004386868.1	CDS	Alide2_0941	NC_015422.1	984707	985669	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0820 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(984707..985669)	Alicycliphilus denitrificans K601	10481963
YP_004386869.1	CDS	Alide2_0942	NC_015422.1	985814	986071	D	KEGG: dia:Dtpsy_0821 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	985814..986071	Alicycliphilus denitrificans K601	10481964
YP_004386870.1	CDS	Alide2_0943	NC_015422.1	986133	986762	R	PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: dia:Dtpsy_0822 peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase	complement(986133..986762)	Alicycliphilus denitrificans K601	10481965
YP_004386871.1	CDS	Alide2_0944	NC_015422.1	986872	987498	R	KEGG: dia:Dtpsy_0823 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: Ribosomal protein L25, long-form; PFAM: Ribosomal protein L25, short-form; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5	complement(986872..987498)	Alicycliphilus denitrificans K601	10481966
YP_004386872.1	CDS	Alide2_0945	NC_015422.1	987600	988559	R	TIGRFAM: Phosphoribosyl pyrophosphokinase; KEGG: dia:Dtpsy_0824 ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyltransferase; ribose-phosphate pyrophosphokinase	complement(987600..988559)	Alicycliphilus denitrificans K601	10481967
YP_004386873.1	CDS	Alide2_0946	NC_015422.1	988779	989645	R	PFAM: GHMP kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: ajs:Ajs_0896 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	complement(988779..989645)	Alicycliphilus denitrificans K601	10481969
YP_004386874.1	CDS	Alide2_0947	NC_015422.1	989650	990147	R	PFAM: Outer membrane lipoprotein LolB; KEGG: dia:Dtpsy_0826 putative lipoprotein; outer membrane lipoprotein LolB	complement(989650..990147)	Alicycliphilus denitrificans K601	10481970
YP_004386875.1	CDS	Alide2_0948	NC_015422.1	990144	991925	R	PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: ajs:Ajs_0898 TPR repeat-containing protein; hypothetical protein	complement(990144..991925)	Alicycliphilus denitrificans K601	10481971
YP_004386876.1	CDS	Alide2_0949	NC_015422.1	991955	992770	D	SMART: DNA glycosylase/AP lyase, catalytic domain; TIGRFAM: DNA glycosylase/AP lyase; KEGG: ajs:Ajs_0899 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; Zinc finger, DNA glycosylase/AP lyase/isoleucyl tRNA synthetase; formamidopyrimidine-DNA glycosylase	991955..992770	Alicycliphilus denitrificans K601	10481972
YP_004386877.1	CDS	Alide2_0950	NC_015422.1	992840	994825	D	manually curated; KEGG: dia:Dtpsy_0829 hypothetical protein; hypothetical protein	992840..994825	Alicycliphilus denitrificans K601	10481973
YP_004386878.1	CDS	Alide2_0951	NC_015422.1	994822	995880	D	TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: dia:Dtpsy_0830 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; A/G-specific adenine glycosylase	994822..995880	Alicycliphilus denitrificans K601	10481974
YP_004386879.1	CDS	Alide2_0952	NC_015422.1	995994	996857	R	HAMAP: ATPase, P-loop-containing; KEGG: dia:Dtpsy_0831 hypothetical protein; hypothetical protein	complement(995994..996857)	Alicycliphilus denitrificans K601	10481975
YP_004386880.1	CDS	Alide2_0953	NC_015422.1	996863	998536	R	KEGG: ajs:Ajs_0903 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC; DNA repair protein RecN	complement(996863..998536)	Alicycliphilus denitrificans K601	10481976
YP_004386881.1	CDS	Alide2_0954	NC_015422.1	998539	999435	R	HAMAP: Inorganic polyphosphate/ATP-NAD kinase, predicted; KEGG: dia:Dtpsy_0833 NAD(+)/NADH kinase family protein; PFAM: Inorganic polyphosphate/ATP-NAD kinase, predicted; inorganic polyphosphate/ATP-NAD kinase	complement(998539..999435)	Alicycliphilus denitrificans K601	10481977
YP_004386882.1	CDS	Alide2_0955	NC_015422.1	999464	1000468	D	TIGRFAM: Winged helix-turn-helix transcription repressor, HrcA; HAMAP: Winged helix-turn-helix transcription repressor, HrcA; KEGG: dia:Dtpsy_0847 heat-inducible transcription repressor; PFAM: Winged helix-turn-helix transcription repressor, HrcA, C-terminal; heat-inducible transcription repressor HrcA	999464..1000468	Alicycliphilus denitrificans K601	10481978
YP_004386883.1	CDS	Alide2_0957	NC_015422.1	1000898	1001368	D	PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; KEGG: gur:Gura_3600 N-6 DNA methylase; Restriction endonuclease, type I, EcoRI, R subunit/type III	1000898..1001368	Alicycliphilus denitrificans K601	10481981
YP_004386884.1	CDS	Alide2_0958	NC_015422.1	1001365	1002279	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(1001365..1002279)	Alicycliphilus denitrificans K601	10481982
YP_004386885.1	CDS	Alide2_0959	NC_015422.1	1002276	1002599	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(1002276..1002599)	Alicycliphilus denitrificans K601	10481983
YP_004386886.1	CDS	Alide2_0960	NC_015422.1	1002847	1004109	R	KEGG: dac:Daci_2707 outer membrane efflux protein; outer membrane efflux protein	complement(1002847..1004109)	Alicycliphilus denitrificans K601	10481984
YP_004386887.1	CDS	Alide2_0961	NC_015422.1	1004106	1004447	R	PFAM: Protein of unknown function DUF3240; KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein	complement(1004106..1004447)	Alicycliphilus denitrificans K601	10481985
YP_004386888.1	CDS	Alide2_0963	NC_015422.1	1006794	1007999	R	PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein; transposase IS4 family protein	complement(1006794..1007999)	Alicycliphilus denitrificans K601	10481987
YP_004386889.1	CDS	Alide2_0964	NC_015422.1	1009019	1010242	R	KEGG: dac:Daci_2710 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	complement(1009019..1010242)	Alicycliphilus denitrificans K601	10481988
YP_004386890.1	CDS	Alide2_0965	NC_015422.1	1010422	1010979	D	manually curated; KEGG: dac:Daci_2711 cytochrome b561; cytochrome b561	1010422..1010979	Alicycliphilus denitrificans K601	10481989
YP_004386891.1	CDS	Alide2_0966	NC_015422.1	1011005	1011700	D	PFAM: Domain of unknown function DUF125, transmembrane; KEGG: dac:Daci_2712 hypothetical protein; hypothetical protein	1011005..1011700	Alicycliphilus denitrificans K601	10481990
YP_004386892.1	CDS	Alide2_0967	NC_015422.1	1011703	1013100	R	manually curated; PFAM: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; KEGG: dac:Daci_2713 histidine kinase; SMART: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase	complement(1011703..1013100)	Alicycliphilus denitrificans K601	10481991
YP_004386893.1	CDS	Alide2_0968	NC_015422.1	1013104	1013769	R	KEGG: dac:Daci_2714 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(1013104..1013769)	Alicycliphilus denitrificans K601	10481992
YP_004386894.1	CDS	Alide2_0969	NC_015422.1	1013927	1014085	D	hypothetical protein	1013927..1014085	Alicycliphilus denitrificans K601	10481993
YP_004386895.1	CDS	Alide2_0971	NC_015422.1	1014693	1015760	D	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: rpa:RPA3655 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein	1014693..1015760	Alicycliphilus denitrificans K601	10481995
YP_004386896.1	CDS	Alide2_0972	NC_015422.1	1015763	1016845	R	PFAM: Lactonase, 7-bladed beta propeller; KEGG: dac:Daci_4552 putative hemagglutinin-related protein; Lactonase, 7-bladed beta propeller	complement(1015763..1016845)	Alicycliphilus denitrificans K601	10481996
YP_004386897.1	CDS	Alide2_0973	NC_015422.1	1016842	1017579	R	KEGG: dac:Daci_4553 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	complement(1016842..1017579)	Alicycliphilus denitrificans K601	10481997
YP_004386898.1	CDS	Alide2_0974	NC_015422.1	1017592	1018533	R	KEGG: dac:Daci_4554 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; GntR family transcriptional regulator	complement(1017592..1018533)	Alicycliphilus denitrificans K601	10481998
YP_004386899.1	CDS	Alide2_0975	NC_015422.1	1018530	1021184	R	KEGG: dac:Daci_4555 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; Aconitate hydratase	complement(1018530..1021184)	Alicycliphilus denitrificans K601	10481999
YP_004386900.1	CDS	Alide2_0976	NC_015422.1	1021270	1022241	D	KEGG: vap:Vapar_6186 hypothetical protein; hypothetical protein	1021270..1022241	Alicycliphilus denitrificans K601	10482000
YP_004386901.1	CDS	Alide2_0977	NC_015422.1	1022296	1023285	D	KEGG: dac:Daci_4557 hypothetical protein; hypothetical protein	1022296..1023285	Alicycliphilus denitrificans K601	10482001
YP_004386902.1	CDS	Alide2_0978	NC_015422.1	1023400	1023756	D	PFAM: Divalent ion tolerance protein, CutA1; KEGG: dia:Dtpsy_2844 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein	1023400..1023756	Alicycliphilus denitrificans K601	10482002
YP_004386903.1	CDS	Alide2_0979	NC_015422.1	1023771	1024937	R	KEGG: dac:Daci_3339 mandelate racemase/muconate lactonizing protein; PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing protein	complement(1023771..1024937)	Alicycliphilus denitrificans K601	10482003
YP_004386904.1	CDS	Alide2_0980	NC_015422.1	1024963	1025667	R	KEGG: vap:Vapar_5678 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(1024963..1025667)	Alicycliphilus denitrificans K601	10482004
YP_004386905.1	CDS	Alide2_0981	NC_015422.1	1025657	1026622	R	KEGG: dac:Daci_3341 hypothetical protein; hypothetical protein	complement(1025657..1026622)	Alicycliphilus denitrificans K601	10482005
YP_004386906.1	CDS	Alide2_0982	NC_015422.1	1026654	1027592	R	KEGG: dac:Daci_3342 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase	complement(1026654..1027592)	Alicycliphilus denitrificans K601	10482006
YP_004386907.1	CDS	Alide2_0983	NC_015422.1	1027711	1028664	D	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: aav:Aave_1392 LysR family transcriptional regulator; LysR family transcriptional regulator	1027711..1028664	Alicycliphilus denitrificans K601	10482007
YP_004386908.1	CDS	Alide2_0984	NC_015422.1	1028678	1029802	R	TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: dia:Dtpsy_2843 signal recognition particle-docking protein FtsY; SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle-docking protein FtsY	complement(1028678..1029802)	Alicycliphilus denitrificans K601	10482008
YP_004386909.1	CDS	Alide2_0985	NC_015422.1	1029832	1031262	D	KEGG: dia:Dtpsy_2842 peptidase M16 domain protein; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; processing peptidase	1029832..1031262	Alicycliphilus denitrificans K601	10482009
YP_004386910.1	CDS	Alide2_0986	NC_015422.1	1031276	1032634	D	KEGG: dia:Dtpsy_2841 peptidase M16 domain protein; manually curated; PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; peptidase M16 domain-containing protein	1031276..1032634	Alicycliphilus denitrificans K601	10482010
YP_004386911.1	CDS	Alide2_0987	NC_015422.1	1032631	1033221	D	TIGRFAM: RNA methyltransferase, RsmD; KEGG: dia:Dtpsy_2840 methyltransferase; PFAM: RNA methyltransferase, RsmD; methyltransferase	1032631..1033221	Alicycliphilus denitrificans K601	10482011
YP_004386912.1	CDS	Alide2_0988	NC_015422.1	1033349	1033837	D	TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; KEGG: dia:Dtpsy_2839 phosphopantetheine adenylyltransferase; PFAM: Cytidylyltransferase; pantetheine-phosphate adenylyltransferase	1033349..1033837	Alicycliphilus denitrificans K601	10482012
YP_004386913.1	CDS	Alide2_0989	NC_015422.1	1033993	1034307	R	KEGG: dia:Dtpsy_2837 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein	complement(1033993..1034307)	Alicycliphilus denitrificans K601	10482013
YP_004386914.1	CDS	Alide2_0990	NC_015422.1	1034446	1034838	R	PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_2835 hypothetical protein; hypothetical protein	complement(1034446..1034838)	Alicycliphilus denitrificans K601	10482014
YP_004386915.1	CDS	Alide2_0991	NC_015422.1	1034904	1035068	R	PFAM: Protein of unknown function DUF1328; KEGG: dia:Dtpsy_2834 hypothetical protein; hypothetical protein	complement(1034904..1035068)	Alicycliphilus denitrificans K601	10482015
YP_004386916.1	CDS	Alide2_0992	NC_015422.1	1035211	1036554	R	KEGG: ajs:Ajs_3510 multi-sensor signal transduction histidine kinase; PFAM: CHASE3; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; multi-sensor signal transduction histidine kinase	complement(1035211..1036554)	Alicycliphilus denitrificans K601	10482016
YP_004386917.1	CDS	Alide2_0993	NC_015422.1	1036664	1037296	D	KEGG: dia:Dtpsy_2832 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	1036664..1037296	Alicycliphilus denitrificans K601	10482017
YP_004386918.1	CDS	Alide2_0994	NC_015422.1	1037274	1037693	R	KEGG: dia:Dtpsy_2831 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver	complement(1037274..1037693)	Alicycliphilus denitrificans K601	10482018
YP_004386919.1	CDS	Alide2_0995	NC_015422.1	1037799	1038563	R	PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: ajs:Ajs_3507 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein	complement(1037799..1038563)	Alicycliphilus denitrificans K601	10482019
YP_004386920.1	CDS	Alide2_0996	NC_015422.1	1038631	1040067	R	TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: ajs:Ajs_3506 C-terminal processing peptidase-3; SMART: Peptidase S41; PDZ/DHR/GLGF; carboxyl-terminal protease	complement(1038631..1040067)	Alicycliphilus denitrificans K601	10482020
YP_004386921.1	CDS	Alide2_0997	NC_015422.1	1040154	1040897	R	SMART: Histidine phosphatase superfamily, clade-1; TIGRFAM: Phosphoglycerate mutase 1; KEGG: ajs:Ajs_3505 phosphoglyceromutase; PFAM: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase 1 family	complement(1040154..1040897)	Alicycliphilus denitrificans K601	10482021
YP_004386922.1	CDS	Alide2_0998	NC_015422.1	1040971	1041378	D	KEGG: dia:Dtpsy_2827 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; Rhodanese-like protein	1040971..1041378	Alicycliphilus denitrificans K601	10482022
YP_004386923.1	CDS	Alide2_0999	NC_015422.1	1041427	1041690	D	KEGG: dia:Dtpsy_2826 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin; glutaredoxin 3	1041427..1041690	Alicycliphilus denitrificans K601	10482023
YP_004386924.1	CDS	Alide2_1000	NC_015422.1	1041793	1042248	D	KEGG: dia:Dtpsy_2825 preprotein translocase subunit SecB; TIGRFAM: Bacterial protein export chaperone SecB; PFAM: Bacterial protein export chaperone SecB; protein-export protein SecB	1041793..1042248	Alicycliphilus denitrificans K601	10482024
YP_004386925.1	CDS	Alide2_1001	NC_015422.1	1042315	1043307	D	manually curated; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; KEGG: xtr:100490244 glycerol-3-phosphate dehydrogenase [NAD(P)+]-like; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; glycerol-3-phosphate dehydrogenase (NAD(P)+)	1042315..1043307	Alicycliphilus denitrificans K601	10482025
YP_004386926.1	CDS	Alide2_1002	NC_015422.1	1043425	1044159	D	KEGG: pna:Pnap_3576 hypothetical protein; hypothetical protein	1043425..1044159	Alicycliphilus denitrificans K601	10482026
YP_004386927.1	CDS	Alide2_1003	NC_015422.1	1044187	1045170	R	KEGG: bpa:BPP0893 hypothetical protein; hypothetical protein	complement(1044187..1045170)	Alicycliphilus denitrificans K601	10482027
YP_004386928.1	CDS	Alide2_1004	NC_015422.1	1045202	1045939	R	PFAM: Protein of unknown function DUF81; KEGG: bpa:BPP0894 hypothetical protein; hypothetical protein	complement(1045202..1045939)	Alicycliphilus denitrificans K601	10482028
YP_004386929.1	CDS	Alide2_1005	NC_015422.1	1045954	1047480	R	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: bbr:BB0988 hypothetical protein; Microcystin LR degradation protein MlrC	complement(1045954..1047480)	Alicycliphilus denitrificans K601	10482029
YP_004386930.1	CDS	Alide2_1006	NC_015422.1	1047489	1048481	R	KEGG: bpa:BPP0896 hypothetical protein; hypothetical protein	complement(1047489..1048481)	Alicycliphilus denitrificans K601	10482030
YP_004386931.1	CDS	Alide2_1007	NC_015422.1	1048598	1049488	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0990 LysR family transcriptional regulator; LysR family transcriptional regulator	1048598..1049488	Alicycliphilus denitrificans K601	10482031
YP_004386932.1	CDS	Alide2_1008	NC_015422.1	1049608	1050459	R	KEGG: ajs:Ajs_3500 pantoate--beta-alanine ligase; TIGRFAM: Pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase	complement(1049608..1050459)	Alicycliphilus denitrificans K601	10482032
YP_004386933.1	CDS	Alide2_1009	NC_015422.1	1050471	1051355	R	TIGRFAM: Ketopantoate hydroxymethyltransferase; KEGG: dia:Dtpsy_2822 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase	complement(1050471..1051355)	Alicycliphilus denitrificans K601	10482033
YP_004386934.1	CDS	Alide2_1011	NC_015422.1	1051674	1052555	D	TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; KEGG: dia:Dtpsy_2821 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; nicotinate-nucleotide pyrophosphorylase	1051674..1052555	Alicycliphilus denitrificans K601	10482035
YP_004386935.1	CDS	Alide2_1012	NC_015422.1	1052777	1053901	D	TIGRFAM: Quinolinate synthetase A; KEGG: dia:Dtpsy_2820 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A	1052777..1053901	Alicycliphilus denitrificans K601	10482036
YP_004386936.1	CDS	Alide2_1013	NC_015422.1	1053955	1055697	D	TIGRFAM: Para-aminobenzoate synthase, component I; KEGG: ajs:Ajs_3496 para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding, C-terminal; Aminotransferase, class IV; para-aminobenzoate synthase subunit I	1053955..1055697	Alicycliphilus denitrificans K601	10482037
YP_004386937.1	CDS	Alide2_1014	NC_015422.1	1055835	1056197	R	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: dia:Dtpsy_2818 5-carboxymethyl-2-hydroxymuconate isomerase; 5-carboxymethyl-2-hydroxymuconate isomerase	complement(1055835..1056197)	Alicycliphilus denitrificans K601	10482038
YP_004386938.1	CDS	Alide2_1015	NC_015422.1	1056245	1057819	R	TIGRFAM: L-aspartate oxidase; KEGG: vei:Veis_1080 L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; L-aspartate oxidase	complement(1056245..1057819)	Alicycliphilus denitrificans K601	10482039
YP_004386939.1	CDS	Alide2_1016	NC_015422.1	1057911	1058780	R	KEGG: reh:H16_A1911 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator	complement(1057911..1058780)	Alicycliphilus denitrificans K601	10482040
YP_004386940.1	CDS	Alide2_1017	NC_015422.1	1058876	1059430	D	KEGG: axy:AXYL_05773 carboxymuconolactone decarboxylase family protein 5; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein	1058876..1059430	Alicycliphilus denitrificans K601	10482041
YP_004386941.1	CDS	Alide2_1018	NC_015422.1	1059415	1060251	R	PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; KEGG: ajs:Ajs_3492 condensin subunit ScpA; chromosome segregation and condensation protein ScpA	complement(1059415..1060251)	Alicycliphilus denitrificans K601	10482042
YP_004386942.1	CDS	Alide2_1019	NC_015422.1	1060317	1060532	R	PFAM: Protein of unknown function DUF3460; KEGG: ajs:Ajs_3491 hypothetical protein; hypothetical protein	complement(1060317..1060532)	Alicycliphilus denitrificans K601	10482043
YP_004386943.1	CDS	Alide2_1020	NC_015422.1	1060578	1061078	D	KEGG: dac:Daci_1840 putative lipoprotein; hypothetical protein	1060578..1061078	Alicycliphilus denitrificans K601	10482044
YP_004386944.1	CDS	Alide2_1021	NC_015422.1	1061085	1062737	R	KEGG: ajs:Ajs_3488 hypothetical protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; acetolactate synthase	complement(1061085..1062737)	Alicycliphilus denitrificans K601	10482045
YP_004386945.1	CDS	Alide2_1022	NC_015422.1	1062806	1063957	R	KEGG: ajs:Ajs_3487 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome)	complement(1062806..1063957)	Alicycliphilus denitrificans K601	10482046
YP_004386946.1	CDS	Alide2_1023	NC_015422.1	1063954	1065564	R	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: dia:Dtpsy_2809 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein	complement(1063954..1065564)	Alicycliphilus denitrificans K601	10482047
YP_004386947.1	CDS	Alide2_1024	NC_015422.1	1065659	1066666	D	KEGG: ajs:Ajs_3485 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; Helix-turn-helix, Fis-type; SMART: Helix-turn-helix, AraC type, DNA binding domain; Fis family transcriptional regulator	1065659..1066666	Alicycliphilus denitrificans K601	10482048
YP_004386948.1	CDS	Alide2_1025	NC_015422.1	1066752	1067468	R	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: tmz:Tmz1t_0983 glutamine amidotransferase; glutamine amidotransferase class-I	complement(1066752..1067468)	Alicycliphilus denitrificans K601	10482049
YP_004386949.1	CDS	Alide2_1026	NC_015422.1	1067465	1068259	R	KEGG: dac:Daci_3709 alanine racemase domain-containing protein; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein	complement(1067465..1068259)	Alicycliphilus denitrificans K601	10482050
YP_004386950.1	CDS	Alide2_1027	NC_015422.1	1068256	1069473	R	KEGG: dac:Daci_3710 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein; benzoate transporter	complement(1068256..1069473)	Alicycliphilus denitrificans K601	10482051
YP_004386951.1	CDS	Alide2_1028	NC_015422.1	1069563	1071035	D	KEGG: tmz:Tmz1t_0986 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator	1069563..1071035	Alicycliphilus denitrificans K601	10482052
YP_004386952.1	CDS	Alide2_1029	NC_015422.1	1071209	1071436	R	KEGG: dac:Daci_1842 hypothetical protein; hypothetical protein	complement(1071209..1071436)	Alicycliphilus denitrificans K601	10482053
YP_004386953.1	CDS	Alide2_1030	NC_015422.1	1071453	1073522	R	TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; KEGG: dia:Dtpsy_2806 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding domain; methionyl-tRNA synthetase	complement(1071453..1073522)	Alicycliphilus denitrificans K601	10482054
YP_004386954.1	CDS	Alide2_1031	NC_015422.1	1073602	1074843	R	PFAM: Patatin/Phospholipase A2-related; KEGG: dia:Dtpsy_2805 patatin; Patatin	complement(1073602..1074843)	Alicycliphilus denitrificans K601	10482055
YP_004386955.1	CDS	Alide2_1032	NC_015422.1	1074868	1075443	R	PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: dia:Dtpsy_2804 restriction endonuclease; restriction endonuclease	complement(1074868..1075443)	Alicycliphilus denitrificans K601	10482056
YP_004386956.1	CDS	Alide2_1033	NC_015422.1	1075630	1076679	R	KEGG: dia:Dtpsy_2803 tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese-like; tRNA 2-selenouridine synthase	complement(1075630..1076679)	Alicycliphilus denitrificans K601	10482057
YP_004386957.1	CDS	Alide2_1034	NC_015422.1	1076738	1077799	D	TIGRFAM: Selenide water dikinase; HAMAP: Selenide, water dikinase, class I; KEGG: ajs:Ajs_3479 selenophosphate synthase; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal; Selenide, water dikinase	1076738..1077799	Alicycliphilus denitrificans K601	10482058
YP_004386958.1	CDS	Alide2_1035	NC_015422.1	1077796	1078869	D	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dia:Dtpsy_2801 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein	1077796..1078869	Alicycliphilus denitrificans K601	10482059
YP_004386959.1	CDS	Alide2_1036	NC_015422.1	1078936	1080027	D	PFAM: ATPase-like, ParA/MinD; Domain of unknown function DUF59; KEGG: ajs:Ajs_3476 hypothetical protein; ATPase-like, ParA/MinD	1078936..1080027	Alicycliphilus denitrificans K601	10482060
YP_004386960.1	CDS	Alide2_1037	NC_015422.1	1080213	1080716	D	PFAM: MaoC-like dehydratase; KEGG: bpt:Bpet0844 hypothetical protein; MaoC domain-containing protein dehydratase	1080213..1080716	Alicycliphilus denitrificans K601	10482061
YP_004386961.1	CDS	Alide2_1038	NC_015422.1	1080766	1081746	D	KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein	1080766..1081746	Alicycliphilus denitrificans K601	10482062
YP_004386962.1	CDS	Alide2_1039	NC_015422.1	1081754	1083205	D	PFAM: MmgE/PrpD; KEGG: bpt:Bpet0850 hypothetical protein; MmgE/PrpD family protein	1081754..1083205	Alicycliphilus denitrificans K601	10482063
YP_004386963.1	CDS	Alide2_1040	NC_015422.1	1083202	1084374	D	KEGG: bpt:Bpet0851 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	1083202..1084374	Alicycliphilus denitrificans K601	10482064
YP_004386964.1	CDS	Alide2_1041	NC_015422.1	1084371	1085600	D	KEGG: bpt:Bpet0852 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase	1084371..1085600	Alicycliphilus denitrificans K601	10482065
YP_004386965.1	CDS	Alide2_1042	NC_015422.1	1085597	1086412	D	KEGG: bpt:Bpet0853 GntR family transcriptional regulator; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; GntR family transcriptional regulator	1085597..1086412	Alicycliphilus denitrificans K601	10482066
YP_004386966.1	CDS	Alide2_1043	NC_015422.1	1086409	1087611	D	PFAM: Major facilitator superfamily MFS-1; KEGG: rfr:Rfer_4176 major facilitator transporter; major facilitator superfamily protein	1086409..1087611	Alicycliphilus denitrificans K601	10482067
YP_004386967.1	CDS	Alide2_1044	NC_015422.1	1087642	1088448	D	PFAM: Aldehyde-lyase domain; KEGG: bpy:Bphyt_0618 citrate (pro-3S)-lyase; HpcH/HpaI aldolase	1087642..1088448	Alicycliphilus denitrificans K601	10482068
YP_004386968.1	CDS	Alide2_1045	NC_015422.1	1088562	1090463	D	KEGG: dia:Dtpsy_2798 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; NADH:ubiquinone oxidoreductase, 24kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; respiratory-chain NADH dehydrogenase domain 51 kDa subunit	1088562..1090463	Alicycliphilus denitrificans K601	10482069
YP_004386969.1	CDS	Alide2_1046	NC_015422.1	1090460	1093321	D	SMART: Molybdopterin oxidoreductase, Fe4S4 domain; TIGRFAM: Formate dehydrogenase, alpha subunit; KEGG: dia:Dtpsy_2797 formate dehydrogenase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Ferredoxin; 4Fe-4S binding domain; Molydopterin dinucleotide-binding domain; formate dehydrogenase subunit alpha	1090460..1093321	Alicycliphilus denitrificans K601	10482070
YP_004386970.1	CDS	Alide2_1047	NC_015422.1	1093332	1093895	D	manually curated; KEGG: dia:Dtpsy_2796 hypothetical protein; hypothetical protein	1093332..1093895	Alicycliphilus denitrificans K601	10482071
YP_004386971.1	CDS	Alide2_1048	NC_015422.1	1093888	1094496	D	KEGG: ajs:Ajs_3468 hypothetical protein; hypothetical protein	1093888..1094496	Alicycliphilus denitrificans K601	10482072
YP_004386972.1	CDS	Alide2_1049	NC_015422.1	1094456	1096519	D	PFAM: 4Fe-4S binding domain; KEGG: ajs:Ajs_3467 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	1094456..1096519	Alicycliphilus denitrificans K601	10482073
YP_004386973.1	CDS	Alide2_1050	NC_015422.1	1096516	1097151	D	KEGG: dia:Dtpsy_2793 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein	1096516..1097151	Alicycliphilus denitrificans K601	10482074
YP_004386974.1	CDS	Alide2_1051	NC_015422.1	1097287	1097499	D	TIGRFAM: Formate dehydrogenase, TAT signal-containing; KEGG: dia:Dtpsy_2792 formate dehydrogenase region TAT target; formate dehydrogenase region TAT target	1097287..1097499	Alicycliphilus denitrificans K601	10482075
YP_004386975.1	CDS	Alide2_1052	NC_015422.1	1097521	1100493	D	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; KEGG: dia:Dtpsy_2791 molybdopterin oxidoreductase; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Nitrate reductase	1097521..1100493	Alicycliphilus denitrificans K601	10482076
YP_004386976.1	CDS	Alide2_1053	NC_015422.1	1100521	1101141	D	PFAM: 4Fe-4S binding domain; KEGG: dia:Dtpsy_2790 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	1100521..1101141	Alicycliphilus denitrificans K601	10482077
YP_004386977.1	CDS	Alide2_1054	NC_015422.1	1101138	1101371	D	KEGG: dia:Dtpsy_2789 putative lipoprotein; hypothetical protein	1101138..1101371	Alicycliphilus denitrificans K601	10482078
YP_004386978.1	CDS	Alide2_1055	NC_015422.1	1101385	1102581	D	KEGG: ajs:Ajs_3461 formate dehydrogenase gamma subunit; TIGRFAM: Formate dehydrogenase, gamma subunit; PFAM: Cytochrome b/b6, N-terminal; formate dehydrogenase subunit gamma	1101385..1102581	Alicycliphilus denitrificans K601	10482079
YP_004386979.1	CDS	Alide2_1056	NC_015422.1	1102578	1102898	D	KEGG: dia:Dtpsy_2787 hypothetical protein; hypothetical protein	1102578..1102898	Alicycliphilus denitrificans K601	10482080
YP_004386980.1	CDS	Alide2_1057	NC_015422.1	1102978	1103844	D	PFAM: Formate dehydrogenase, subunit FdhD; KEGG: dia:Dtpsy_2786 formate dehydrogenase subunit FdhD; formate dehydrogenase subunit FdhD	1102978..1103844	Alicycliphilus denitrificans K601	10482081
YP_004386981.1	CDS	Alide2_1058	NC_015422.1	1103854	1106385	D	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2785 protein of unknown function DUF214; hypothetical protein	1103854..1106385	Alicycliphilus denitrificans K601	10482082
YP_004386982.1	CDS	Alide2_1059	NC_015422.1	1106388	1106615	D	KEGG: dia:Dtpsy_2784 hypothetical protein; hypothetical protein	1106388..1106615	Alicycliphilus denitrificans K601	10482083
YP_004386983.1	CDS	Alide2_1060	NC_015422.1	1106669	1108225	D	KEGG: ajs:Ajs_3456 hypothetical protein; hypothetical protein	1106669..1108225	Alicycliphilus denitrificans K601	10482084
YP_004386984.1	CDS	Alide2_1061	NC_015422.1	1108269	1108661	D	KEGG: dia:Dtpsy_2782 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator	1108269..1108661	Alicycliphilus denitrificans K601	10482085
YP_004386985.1	CDS	Alide2_1062	NC_015422.1	1108661	1109098	D	PFAM: Globin, truncated bacterial-like; KEGG: ajs:Ajs_3454 globin; globin	1108661..1109098	Alicycliphilus denitrificans K601	10482086
YP_004386986.1	CDS	Alide2_1063	NC_015422.1	1109148	1109906	R	KEGG: reu:Reut_B4840 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(1109148..1109906)	Alicycliphilus denitrificans K601	10482087
YP_004386987.1	CDS	Alide2_1064	NC_015422.1	1110000	1110854	R	PFAM: Isocitrate lyase/phosphorylmutase; KEGG: reu:Reut_B4841 2,3-dimethylmalate lyase; isocitrate lyase and phosphorylmutase	complement(1110000..1110854)	Alicycliphilus denitrificans K601	10482088
YP_004386988.1	CDS	Alide2_1065	NC_015422.1	1110851	1111420	R	KEGG: reu:Reut_B4842 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit, subgroup; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase, small subunit	complement(1110851..1111420)	Alicycliphilus denitrificans K601	10482089
YP_004386989.1	CDS	Alide2_1066	NC_015422.1	1111417	1112697	R	KEGG: xtr:100490803 isopropylmalate/citramalate isomerase large subunit-like; TIGRFAM: Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; homoaconitate hydratase family protein	complement(1111417..1112697)	Alicycliphilus denitrificans K601	10482090
YP_004386990.1	CDS	Alide2_1067	NC_015422.1	1112694	1113662	R	KEGG: xtr:100490977 UPF0065 protein in tcbD-tcbE intergenic region-like; hypothetical protein	complement(1112694..1113662)	Alicycliphilus denitrificans K601	10482091
YP_004386991.1	CDS	Alide2_1068	NC_015422.1	1113760	1114410	R	KEGG: dia:Dtpsy_2779 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2	complement(1113760..1114410)	Alicycliphilus denitrificans K601	10482092
YP_004386992.1	CDS	Alide2_1069	NC_015422.1	1114407	1115567	R	KEGG: dia:Dtpsy_2778 hypothetical protein; hypothetical protein	complement(1114407..1115567)	Alicycliphilus denitrificans K601	10482093
YP_004386993.1	CDS	Alide2_1070	NC_015422.1	1115564	1116277	R	KEGG: ajs:Ajs_3450 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC	complement(1115564..1116277)	Alicycliphilus denitrificans K601	10482094
YP_004386994.1	CDS	Alide2_1071	NC_015422.1	1116359	1116835	D	PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_2776 peptidylprolyl isomerase FKBP-type; FKBP-type peptidylprolyl isomerase	1116359..1116835	Alicycliphilus denitrificans K601	10482095
YP_004386995.1	CDS	Alide2_1072	NC_015422.1	1116841	1117824	D	PFAM: LytB protein; TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: ajs:Ajs_3448 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1116841..1117824	Alicycliphilus denitrificans K601	10482096
YP_004386996.1	CDS	Alide2_1073	NC_015422.1	1118032	1119360	D	KEGG: ajs:Ajs_3447 hypothetical protein; PFAM: Domain of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated domain; SMART: Cystathionine beta-synthase, core; hypothetical protein	1118032..1119360	Alicycliphilus denitrificans K601	10482097
YP_004386997.1	CDS	Alide2_1074	NC_015422.1	1119382	1120059	R	KEGG: aav:Aave_3769 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; putative signal transduction protein with CBS domains	complement(1119382..1120059)	Alicycliphilus denitrificans K601	10482098
YP_004386998.1	CDS	Alide2_1075	NC_015422.1	1120112	1121428	D	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Seryl-tRNA synthetase, class IIa, N-terminal; TIGRFAM: Seryl-tRNA synthetase, class IIa; HAMAP: Seryl-tRNA synthetase, class IIa; KEGG: dia:Dtpsy_2772 seryl-tRNA synthetase; Seryl-tRNA synthetase	1120112..1121428	Alicycliphilus denitrificans K601	10482099
YP_004386999.1	CDS	Alide2_1076	NC_015422.1	1121486	1122427	D	KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein	1121486..1122427	Alicycliphilus denitrificans K601	10482100
YP_004387000.1	CDS	Alide2_1077	NC_015422.1	1122666	1122953	R	KEGG: mca:MCA1626 hypothetical protein; hypothetical protein	complement(1122666..1122953)	Alicycliphilus denitrificans K601	10482102
YP_004387001.1	CDS	Alide2_1078	NC_015422.1	1122950	1123474	R	hypothetical protein	complement(1122950..1123474)	Alicycliphilus denitrificans K601	10482103
YP_004387002.1	CDS	Alide2_1079	NC_015422.1	1123488	1124783	R	PFAM: Integrase, catalytic core, phage; KEGG: pol:Bpro_0966 phage integrase; integrase family protein	complement(1123488..1124783)	Alicycliphilus denitrificans K601	10482104
YP_004387003.1	CDS	Alide2_1080	NC_015422.1	1125367	1125864	R	PFAM: Protein of unknown function DUF1643; KEGG: mtt:Ftrac_0456 hypothetical protein; hypothetical protein	complement(1125367..1125864)	Alicycliphilus denitrificans K601	10482105
YP_004387004.1	CDS	Alide2_1081	NC_015422.1	1125984	1126217	D	manually curated; PFAM: Helix-turn-helix type 3; KEGG: pde:Pden_0455 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	1125984..1126217	Alicycliphilus denitrificans K601	10482106
YP_004387005.1	CDS	Alide2_1082	NC_015422.1	1127083	1129488	R	KEGG: ppn:Palpr_2996 hypothetical protein; hypothetical protein	complement(1127083..1129488)	Alicycliphilus denitrificans K601	10482107
YP_004387006.1	CDS	Alide2_1083	NC_015422.1	1129735	1131000	R	KEGG: pol:Bpro_0961 hypothetical protein; manually curated; SMART: ATPase, AAA+ type, core; AAA ATPase	complement(1129735..1131000)	Alicycliphilus denitrificans K601	10482108
YP_004387007.1	CDS	Alide2_1084	NC_015422.1	1131291	1131551	R	hypothetical protein	complement(1131291..1131551)	Alicycliphilus denitrificans K601	10482109
YP_004387008.1	CDS	Alide2_1085	NC_015422.1	1132086	1132937	D	KEGG: app:CAP2UW1_1805 FRG domain protein; PFAM: FRG domain; SMART: FRG domain; FRG domain-containing protein	1132086..1132937	Alicycliphilus denitrificans K601	10482110
YP_004387009.1	CDS	Alide2_1086	NC_015422.1	1132989	1133204	R	KEGG: rva:Rvan_1233 hypothetical protein; hypothetical protein	complement(1132989..1133204)	Alicycliphilus denitrificans K601	10482111
YP_004387010.1	CDS	Alide2_1088	NC_015422.1	1133490	1134431	D	KEGG: dac:Daci_5376 hypothetical protein; hypothetical protein	1133490..1134431	Alicycliphilus denitrificans K601	10482113
YP_004387011.1	CDS	Alide2_1089	NC_015422.1	1134699	1136636	D	KEGG: rfr:Rfer_0701 hypothetical protein; hypothetical protein	1134699..1136636	Alicycliphilus denitrificans K601	10482115
YP_004387012.1	CDS	Alide2_1090	NC_015422.1	1136819	1138213	D	TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Sugar transferase, PEP-CTERM system associated; KEGG: rfr:Rfer_0702 undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	1136819..1138213	Alicycliphilus denitrificans K601	10482116
YP_004387013.1	CDS	Alide2_1091	NC_015422.1	1138250	1140556	R	KEGG: dac:Daci_5418 histidine kinase; PFAM: CHASE2; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; multi-sensor signal transduction histidine kinase	complement(1138250..1140556)	Alicycliphilus denitrificans K601	10482117
YP_004387014.1	CDS	Alide2_1092	NC_015422.1	1140597	1142249	R	KEGG: dac:Daci_5417 peptidoglycan-binding LysM; PFAM: FecR protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; FecR protein	complement(1140597..1142249)	Alicycliphilus denitrificans K601	10482118
YP_004387015.1	CDS	Alide2_1093	NC_015422.1	1142373	1143104	R	KEGG: ctt:CtCNB1_0831 two component transcriptional regulator, winged; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(1142373..1143104)	Alicycliphilus denitrificans K601	10482119
YP_004387016.1	CDS	Alide2_1094	NC_015422.1	1143283	1144587	R	TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; KEGG: dia:Dtpsy_2771 tryptophanyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase	complement(1143283..1144587)	Alicycliphilus denitrificans K601	10482120
YP_004387017.1	CDS	Alide2_1095	NC_015422.1	1144599	1145267	R	PFAM: Peptidase M50; KEGG: dia:Dtpsy_2770 peptidase M50; peptidase M50	complement(1144599..1145267)	Alicycliphilus denitrificans K601	10482121
YP_004387018.1	CDS	Alide2_1096	NC_015422.1	1145386	1146558	D	KEGG: dac:Daci_5413 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; methyl-accepting chemotaxis sensory transducer	1145386..1146558	Alicycliphilus denitrificans K601	10482122
YP_004387019.1	CDS	Alide2_1097	NC_015422.1	1146642	1147277	R	KEGG: dia:Dtpsy_2764 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Sua5/YciO/YrdC/YwlC family protein	complement(1146642..1147277)	Alicycliphilus denitrificans K601	10482123
YP_004387020.1	CDS	Alide2_1098	NC_015422.1	1147283	1148251	R	KEGG: dia:Dtpsy_2763 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein	complement(1147283..1148251)	Alicycliphilus denitrificans K601	10482124
YP_004387021.1	CDS	Alide2_1099	NC_015422.1	1148336	1150099	D	KEGG: ajs:Ajs_3430 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	1148336..1150099	Alicycliphilus denitrificans K601	10482125
YP_004387022.1	CDS	Alide2_1100	NC_015422.1	1150160	1151875	R	KEGG: ajs:Ajs_3424 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ	complement(1150160..1151875)	Alicycliphilus denitrificans K601	10482126
YP_004387023.1	CDS	Alide2_1101	NC_015422.1	1151872	1152822	R	PFAM: Bisphosphoglycerate-independent phosphoglycerate mutase; KEGG: dia:Dtpsy_2757 hypothetical protein; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	complement(1151872..1152822)	Alicycliphilus denitrificans K601	10482127
YP_004387024.1	CDS	Alide2_1102	NC_015422.1	1152919	1154172	D	manually curated; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; KEGG: dia:Dtpsy_2755 lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Domain of unknown function DUF214, ABC transporter permease; lipoprotein releasing system, transmembrane protein, LolC/E family	1152919..1154172	Alicycliphilus denitrificans K601	10482128
YP_004387025.1	CDS	Alide2_1103	NC_015422.1	1154165	1154851	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Lipoprotein releasing system, ATP-binding protein; KEGG: dia:Dtpsy_2754 lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter-like; lipoprotein releasing system, ATP-binding protein	1154165..1154851	Alicycliphilus denitrificans K601	10482129
YP_004387026.1	CDS	Alide2_1104	NC_015422.1	1154980	1155282	R	PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_0985 cytochrome c class I; cytochrome c class I	complement(1154980..1155282)	Alicycliphilus denitrificans K601	10482130
YP_004387027.1	CDS	Alide2_1105	NC_015422.1	1155390	1155632	D	KEGG: dia:Dtpsy_0986 hypothetical protein; hypothetical protein	1155390..1155632	Alicycliphilus denitrificans K601	10482131
YP_004387028.1	CDS	Alide2_1106	NC_015422.1	1155657	1157348	R	TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0987 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase	complement(1155657..1157348)	Alicycliphilus denitrificans K601	10482132
YP_004387029.1	CDS	Alide2_1107	NC_015422.1	1157577	1159433	D	TIGRFAM: Dihydroxy-acid dehydratase; KEGG: dia:Dtpsy_0988 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase	1157577..1159433	Alicycliphilus denitrificans K601	10482133
YP_004387030.1	CDS	Alide2_1108	NC_015422.1	1159574	1160002	D	KEGG: dia:Dtpsy_0989 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	1159574..1160002	Alicycliphilus denitrificans K601	10482134
YP_004387031.1	CDS	Alide2_1109	NC_015422.1	1160005	1160472	R	KEGG: dia:Dtpsy_0990 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin	complement(1160005..1160472)	Alicycliphilus denitrificans K601	10482135
YP_004387032.1	CDS	Alide2_1110	NC_015422.1	1160572	1161387	D	KEGG: dia:Dtpsy_0991 prolipoprotein diacylglyceryl transferase; TIGRFAM: Prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase	1160572..1161387	Alicycliphilus denitrificans K601	10482136
YP_004387033.1	CDS	Alide2_1111	NC_015422.1	1161596	1162264	D	KEGG: dia:Dtpsy_0992 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator	1161596..1162264	Alicycliphilus denitrificans K601	10482137
YP_004387034.1	CDS	Alide2_1112	NC_015422.1	1162261	1163688	D	KEGG: ajs:Ajs_1077 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; Malonyl-CoA decarboxylase	1162261..1163688	Alicycliphilus denitrificans K601	10482138
YP_004387035.1	CDS	Alide2_1113	NC_015422.1	1163752	1164774	D	KEGG: dia:Dtpsy_0994 hypothetical protein; hypothetical protein	1163752..1164774	Alicycliphilus denitrificans K601	10482139
YP_004387036.1	CDS	Alide2_1114	NC_015422.1	1164784	1165605	D	PFAM: Crotonase, core; KEGG: ajs:Ajs_1079 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	1164784..1165605	Alicycliphilus denitrificans K601	10482140
YP_004387037.1	CDS	Alide2_1115	NC_015422.1	1165616	1167169	D	KEGG: dia:Dtpsy_0996 malonyl-CoA synthase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	1165616..1167169	Alicycliphilus denitrificans K601	10482141
YP_004387038.1	CDS	Alide2_1116	NC_015422.1	1167279	1167722	R	PFAM: UspA; KEGG: dia:Dtpsy_0997 UspA domain protein; UspA domain-containing protein	complement(1167279..1167722)	Alicycliphilus denitrificans K601	10482142
YP_004387039.1	CDS	Alide2_1117	NC_015422.1	1167885	1170221	D	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_0998 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	1167885..1170221	Alicycliphilus denitrificans K601	10482143
YP_004387040.1	CDS	Alide2_1118	NC_015422.1	1170224	1170361	D	KEGG: dia:Dtpsy_0999 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: Cytochrome oxidase maturation protein cbb3-type; PFAM: Cytochrome oxidase maturation protein cbb3-type; cytochrome oxidase maturation protein, cbb3-type	1170224..1170361	Alicycliphilus denitrificans K601	10482144
YP_004387041.1	CDS	Alide2_1119	NC_015422.1	1170428	1171867	D	TIGRFAM: Cytochrome c oxidase cbb3-type, subunit I; KEGG: dia:Dtpsy_1000 cbb3-type cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome c oxidase, cbb3-type subunit I	1170428..1171867	Alicycliphilus denitrificans K601	10482145
YP_004387042.1	CDS	Alide2_1120	NC_015422.1	1171887	1172519	D	KEGG: dia:Dtpsy_1001 cbb3-type cytochrome c oxidase subunit II; TIGRFAM: Cytochrome c oxidase, monohaem subunit/FixO; PFAM: Cytochrome c oxidase, monohaem subunit/FixO; cytochrome c oxidase, cbb3-type subunit II	1171887..1172519	Alicycliphilus denitrificans K601	10482146
YP_004387043.1	CDS	Alide2_1121	NC_015422.1	1172540	1172677	D	KEGG: dia:Dtpsy_1002 Cbb3-type cytochrome oxidase component; Cbb3-type cytochrome oxidase component	1172540..1172677	Alicycliphilus denitrificans K601	10482147
YP_004387044.1	CDS	Alide2_1122	NC_015422.1	1172707	1173621	D	KEGG: ajs:Ajs_1087 cytochrome c oxidase, cbb3-type, subunit III; TIGRFAM: Cytochrome c oxidase cbb3-type, subunit III; PFAM: Cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III	1172707..1173621	Alicycliphilus denitrificans K601	10482148
YP_004387045.1	CDS	Alide2_1123	NC_015422.1	1173706	1175148	D	TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein CcoG	1173706..1175148	Alicycliphilus denitrificans K601	10482149
YP_004387046.1	CDS	Alide2_1124	NC_015422.1	1175208	1175486	D	PFAM: FixH; KEGG: dia:Dtpsy_1005 hypothetical protein; FixH family protein	1175208..1175486	Alicycliphilus denitrificans K601	10482150
YP_004387047.1	CDS	Alide2_1125	NC_015422.1	1175574	1175861	D	KEGG: dia:Dtpsy_1006 hypothetical protein; hypothetical protein	1175574..1175861	Alicycliphilus denitrificans K601	10482151
YP_004387048.1	CDS	Alide2_1126	NC_015422.1	1175896	1176639	R	KEGG: ajs:Ajs_1091 CRP/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator	complement(1175896..1176639)	Alicycliphilus denitrificans K601	10482152
YP_004387049.1	CDS	Alide2_1127	NC_015422.1	1176810	1178192	D	TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: dia:Dtpsy_1008 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase	1176810..1178192	Alicycliphilus denitrificans K601	10482153
YP_004387050.1	CDS	Alide2_1128	NC_015422.1	1178196	1178918	D	KEGG: ajs:Ajs_1093 hypothetical protein; hypothetical protein	1178196..1178918	Alicycliphilus denitrificans K601	10482154
YP_004387051.1	CDS	Alide2_1129	NC_015422.1	1179079	1180326	D	TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: aav:Aave_1533 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase	1179079..1180326	Alicycliphilus denitrificans K601	10482155
YP_004387052.1	CDS	Alide2_1130	NC_015422.1	1180323	1182773	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; KEGG: dac:Daci_2786 PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	1180323..1182773	Alicycliphilus denitrificans K601	10482156
YP_004387053.1	CDS	Alide2_1131	NC_015422.1	1183028	1183384	R	PFAM: Cell division protein ZapA-like; KEGG: dia:Dtpsy_1010 protein of unknown function DUF710; hypothetical protein	complement(1183028..1183384)	Alicycliphilus denitrificans K601	10482158
YP_004387054.1	CDS	Alide2_1132	NC_015422.1	1183381	1183620	R	KEGG: ajs:Ajs_1095 hypothetical protein; hypothetical protein	complement(1183381..1183620)	Alicycliphilus denitrificans K601	10482159
YP_004387055.1	CDS	Alide2_1133	NC_015422.1	1184048	1185841	D	PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: aav:Aave_1537 TonB-dependent receptor; TonB-dependent receptor plug	1184048..1185841	Alicycliphilus denitrificans K601	10482160
YP_004387056.1	CDS	Alide2_1134	NC_015422.1	1186013	1187365	D	PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1013 CobB/CobQ domain protein glutamine amidotransferase; CobB/CobQ domain-containing protein glutamine amidotransferase	1186013..1187365	Alicycliphilus denitrificans K601	10482161
YP_004387057.1	CDS	Alide2_1135	NC_015422.1	1187362	1187946	D	KEGG: dia:Dtpsy_1014 cobalbumin biosynthesis protein; PFAM: Cobinamide kinase/cobinamide phosphate guanyltransferase; adenosylcobinamide-phosphate guanylyltransferase	1187362..1187946	Alicycliphilus denitrificans K601	10482162
YP_004387058.1	CDS	Alide2_1136	NC_015422.1	1187943	1188842	D	PFAM: Periplasmic binding protein; KEGG: dia:Dtpsy_1015 periplasmic binding protein; ABC transporter substrate-binding protein	1187943..1188842	Alicycliphilus denitrificans K601	10482163
YP_004387059.1	CDS	Alide2_1137	NC_015422.1	1188839	1189882	D	PFAM: ABC transporter permease protein; KEGG: dia:Dtpsy_1016 transport system permease protein; ABC transporter permease	1188839..1189882	Alicycliphilus denitrificans K601	10482164
YP_004387060.1	CDS	Alide2_1138	NC_015422.1	1189879	1190655	D	manually curated; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1017 ABC transporter related; SMART: ATPase, AAA+ type, core; ABC transporter	1189879..1190655	Alicycliphilus denitrificans K601	10482165
YP_004387061.1	CDS	Alide2_1139	NC_015422.1	1190679	1191248	D	TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; KEGG: ctt:CtCNB1_1848 cob(I)alamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR; cob(I)alamin adenosyltransferase	1190679..1191248	Alicycliphilus denitrificans K601	10482166
YP_004387062.1	CDS	Alide2_1140	NC_015422.1	1191355	1191867	D	KEGG: dia:Dtpsy_1019 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; Methylguanine DNA methyltransferase, ribonuclease-like; methylated-DNA/protein-cysteine methyltransferase	1191355..1191867	Alicycliphilus denitrificans K601	10482167
YP_004387063.1	CDS	Alide2_1141	NC_015422.1	1191864	1192559	R	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2354 methyltransferase type 11; type 11 methyltransferase	complement(1191864..1192559)	Alicycliphilus denitrificans K601	10482168
YP_004387064.1	CDS	Alide2_1142	NC_015422.1	1192620	1193690	R	KEGG: gbm:Gbem_2134 NADPH-dependent enal/enone/nitroreductase; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; NADPH dehydrogenase	complement(1192620..1193690)	Alicycliphilus denitrificans K601	10482169
YP_004387065.1	CDS	Alide2_1143	NC_015422.1	1193763	1194728	R	KEGG: reh:H16_B0202 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(1193763..1194728)	Alicycliphilus denitrificans K601	10482170
YP_004387066.1	CDS	Alide2_1144	NC_015422.1	1194959	1196146	D	KEGG: pde:Pden_3227 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1194959..1196146	Alicycliphilus denitrificans K601	10482171
YP_004387067.1	CDS	Alide2_1145	NC_015422.1	1196158	1196910	D	KEGG: ara:Arad_7507 3-oxoacyl-(acyl-carrier-protein) reductase protein; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	1196158..1196910	Alicycliphilus denitrificans K601	10482172
YP_004387068.1	CDS	Alide2_1146	NC_015422.1	1196941	1197702	R	KEGG: axy:AXYL_06414 3-oxoacyl-[acyl-carrier-protein] reductase 10; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(1196941..1197702)	Alicycliphilus denitrificans K601	10482173
YP_004387069.1	CDS	Alide2_1147	NC_015422.1	1197736	1198980	R	KEGG: pag:PLES_04421 putative acyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(1197736..1198980)	Alicycliphilus denitrificans K601	10482174
YP_004387070.1	CDS	Alide2_1148	NC_015422.1	1199012	1199821	R	KEGG: azl:AZL_d00150 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase	complement(1199012..1199821)	Alicycliphilus denitrificans K601	10482175
YP_004387071.1	CDS	Alide2_1149	NC_015422.1	1199827	1200822	R	KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein	complement(1199827..1200822)	Alicycliphilus denitrificans K601	10482176
YP_004387072.1	CDS	Alide2_1150	NC_015422.1	1200924	1201493	R	KEGG: vap:Vapar_5494 gamma-BHC dehydrochlorinase; gamma-BHC dehydrochlorinase	complement(1200924..1201493)	Alicycliphilus denitrificans K601	10482177
YP_004387073.1	CDS	Alide2_1151	NC_015422.1	1201566	1202375	D	PFAM: Crotonase, core; KEGG: swi:Swit_0321 1,4-dihydroxy-2-naphthoate synthase; enoyl-CoA hydratase/isomerase	1201566..1202375	Alicycliphilus denitrificans K601	10482178
YP_004387074.1	CDS	Alide2_1152	NC_015422.1	1202384	1203550	D	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	1202384..1203550	Alicycliphilus denitrificans K601	10482179
YP_004387075.1	CDS	Alide2_1153	NC_015422.1	1203559	1204704	D	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein	1203559..1204704	Alicycliphilus denitrificans K601	10482180
YP_004387076.1	CDS	Alide2_1154	NC_015422.1	1204742	1205599	D	KEGG: gct:GC56T3_1469 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	1204742..1205599	Alicycliphilus denitrificans K601	10482181
YP_004387077.1	CDS	Alide2_1157	NC_015422.1	1206671	1208779	R	KEGG: rme:Rmet_5110 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; 3-hydroxybutyryl-CoA epimerase	complement(1206671..1208779)	Alicycliphilus denitrificans K601	10482184
YP_004387078.1	CDS	Alide2_1158	NC_015422.1	1208869	1209642	D	PFAM: Crotonase, core; KEGG: swi:Swit_0344 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	1208869..1209642	Alicycliphilus denitrificans K601	10482185
YP_004387079.1	CDS	Alide2_1159	NC_015422.1	1209695	1210852	R	KEGG: axy:AXYL_06648 thiolase, C-terminal domain-containing protein 10; thiolase, C-terminal domain-containing protein 10	complement(1209695..1210852)	Alicycliphilus denitrificans K601	10482186
YP_004387080.1	CDS	Alide2_1160	NC_015422.1	1210849	1211253	R	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: rpc:RPC_1073 hypothetical protein; hypothetical protein	complement(1210849..1211253)	Alicycliphilus denitrificans K601	10482187
YP_004387081.1	CDS	Alide2_1161	NC_015422.1	1211250	1213403	R	KEGG: reu:Reut_B4556 CoA-binding; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein	complement(1211250..1213403)	Alicycliphilus denitrificans K601	10482188
YP_004387082.1	CDS	Alide2_1162	NC_015422.1	1213574	1214740	D	KEGG: fal:FRAAL3384 putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	1213574..1214740	Alicycliphilus denitrificans K601	10482189
YP_004387083.1	CDS	Alide2_1163	NC_015422.1	1214757	1215533	D	PFAM: Crotonase, core; KEGG: bxe:Bxe_C0267 short chain enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	1214757..1215533	Alicycliphilus denitrificans K601	10482190
YP_004387084.1	CDS	Alide2_1164	NC_015422.1	1215536	1216666	D	KEGG: vei:Veis_4266 hypothetical protein; hypothetical protein	1215536..1216666	Alicycliphilus denitrificans K601	10482191
YP_004387085.1	CDS	Alide2_1165	NC_015422.1	1216668	1217069	D	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: bbr:BB4332 hypothetical protein; hypothetical protein	1216668..1217069	Alicycliphilus denitrificans K601	10482192
YP_004387086.1	CDS	Alide2_1166	NC_015422.1	1217084	1218268	D	TIGRFAM: Thiolase; KEGG: vap:Vapar_0843 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; acetyl-CoA acetyltransferase	1217084..1218268	Alicycliphilus denitrificans K601	10482193
YP_004387087.1	CDS	Alide2_1167	NC_015422.1	1218285	1219262	D	KEGG: vap:Vapar_1676 hypothetical protein; hypothetical protein	1218285..1219262	Alicycliphilus denitrificans K601	10482194
YP_004387088.1	CDS	Alide2_1168	NC_015422.1	1219309	1220058	D	KEGG: dia:Dtpsy_2299 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta	1219309..1220058	Alicycliphilus denitrificans K601	10482195
YP_004387089.1	CDS	Alide2_1169	NC_015422.1	1220073	1221005	D	KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein subunit alpha	1220073..1221005	Alicycliphilus denitrificans K601	10482196
YP_004387090.1	CDS	Alide2_1170	NC_015422.1	1221313	1222428	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; KEGG: reh:H16_B0372 pimeloyl-CoA dehydrogenase (small subunit); acyl-CoA dehydrogenase domain-containing protein	complement(1221313..1222428)	Alicycliphilus denitrificans K601	10482197
YP_004387091.1	CDS	Alide2_1171	NC_015422.1	1222437	1223585	R	KEGG: rme:Rmet_5530 acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; Isovaleryl-CoA dehydrogenase	complement(1222437..1223585)	Alicycliphilus denitrificans K601	10482198
YP_004387092.1	CDS	Alide2_1172	NC_015422.1	1223800	1224756	D	KEGG: vap:Vapar_5507 hypothetical protein; hypothetical protein	1223800..1224756	Alicycliphilus denitrificans K601	10482199
YP_004387093.1	CDS	Alide2_1173	NC_015422.1	1225513	1225884	R	PFAM: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3; KEGG: dia:Dtpsy_2561 protein of unknown function DUF498; hypothetical protein	complement(1225513..1225884)	Alicycliphilus denitrificans K601	10482201
YP_004387094.1	CDS	Alide2_1174	NC_015422.1	1226003	1227235	D	KEGG: dia:Dtpsy_2560 aminotransferase AlaT; PFAM: Aminotransferase, class I/classII; aspartate transaminase	1226003..1227235	Alicycliphilus denitrificans K601	10482202
YP_004387095.1	CDS	Alide2_1175	NC_015422.1	1227307	1228641	D	KEGG: ajs:Ajs_3206 homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; Homoserine dehydrogenase	1227307..1228641	Alicycliphilus denitrificans K601	10482203
YP_004387096.1	CDS	Alide2_1176	NC_015422.1	1228685	1228948	D	KEGG: bts:Btus_3191 prevent-host-death family protein; TIGRFAM: Prevent-host-death protein; PFAM: Prevent-host-death protein; prevent-host-death family protein	1228685..1228948	Alicycliphilus denitrificans K601	10482204
YP_004387097.1	CDS	Alide2_1177	NC_015422.1	1228954	1229382	D	PFAM: PilT protein, N-terminal; KEGG: geo:Geob_1146 PilT protein domain protein; PilT protein domain-containing protein	1228954..1229382	Alicycliphilus denitrificans K601	10482205
YP_004387098.1	CDS	Alide2_1178	NC_015422.1	1229393	1230823	D	TIGRFAM: Threonine synthase; KEGG: dia:Dtpsy_2558 threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine synthase	1229393..1230823	Alicycliphilus denitrificans K601	10482206
YP_004387099.1	CDS	Alide2_1179	NC_015422.1	1230897	1231448	D	TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB), conserved domain; KEGG: dia:Dtpsy_2557 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B	1230897..1231448	Alicycliphilus denitrificans K601	10482207
YP_004387100.1	CDS	Alide2_1180	NC_015422.1	1231445	1232692	D	TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; Molybdopterin binding; KEGG: ajs:Ajs_3203 molybdenum cofactor synthesis domain-containing protein; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein	1231445..1232692	Alicycliphilus denitrificans K601	10482208
YP_004387101.1	CDS	Alide2_1181	NC_015422.1	1232689	1232949	D	KEGG: dia:Dtpsy_2555 molybdopterin converting factor, subunit 1; TIGRFAM: Molybdopterin converting factor, subunit 1; PFAM: ThiamineS; molybdopterin converting factor subunit 1	1232689..1232949	Alicycliphilus denitrificans K601	10482209
YP_004387102.1	CDS	Alide2_1182	NC_015422.1	1232936	1233838	R	TIGRFAM: Dihydrodipicolinate synthase subfamily; KEGG: dac:Daci_5213 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase	complement(1232936..1233838)	Alicycliphilus denitrificans K601	10482210
YP_004387103.1	CDS	Alide2_1183	NC_015422.1	1234103	1234423	R	KEGG: dia:Dtpsy_2554 hypothetical protein; hypothetical protein	complement(1234103..1234423)	Alicycliphilus denitrificans K601	10482211
YP_004387104.1	CDS	Alide2_1184	NC_015422.1	1234497	1234640	R	PFAM: Protein of unknown function DUF3149; KEGG: dia:Dtpsy_2553 hypothetical protein; hypothetical protein	complement(1234497..1234640)	Alicycliphilus denitrificans K601	10482212
YP_004387105.1	CDS	Alide2_1185	NC_015422.1	1234753	1235007	R	KEGG: dia:Dtpsy_2552 hypothetical protein; hypothetical protein	complement(1234753..1235007)	Alicycliphilus denitrificans K601	10482213
YP_004387106.1	CDS	Alide2_1186	NC_015422.1	1235064	1235540	D	PFAM: Molybdopterin biosynthesis MoaE; KEGG: ajs:Ajs_3199 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein	1235064..1235540	Alicycliphilus denitrificans K601	10482214
YP_004387107.1	CDS	Alide2_1187	NC_015422.1	1235608	1238211	D	TIGRFAM: Chaperonin ClpB; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2550 ATP-dependent chaperone ClpB; SMART: ATPase, AAA+ type, core; ATP-dependent chaperone ClpB	1235608..1238211	Alicycliphilus denitrificans K601	10482215
YP_004387108.1	CDS	Alide2_1188	NC_015422.1	1238227	1238589	D	KEGG: dia:Dtpsy_2549 hypothetical protein; hypothetical protein	1238227..1238589	Alicycliphilus denitrificans K601	10482216
YP_004387109.1	CDS	Alide2_1189	NC_015422.1	1238709	1240169	D	KEGG: dia:Dtpsy_2547 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; Coniferyl-aldehyde dehydrogenase	1238709..1240169	Alicycliphilus denitrificans K601	10482217
YP_004387110.1	CDS	Alide2_1190	NC_015422.1	1240246	1240767	D	KEGG: dia:Dtpsy_2546 GCN5-related N-acetyltransferase; manually curated; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; GCN5-like N-acetyltransferase	1240246..1240767	Alicycliphilus denitrificans K601	10482218
YP_004387111.1	CDS	Alide2_1191	NC_015422.1	1240793	1241932	D	PFAM: Methyltransferase small; KEGG: aav:Aave_1253 methyltransferase small; methyltransferase small	1240793..1241932	Alicycliphilus denitrificans K601	10482219
YP_004387112.1	CDS	Alide2_1192	NC_015422.1	1241988	1243007	D	PFAM: tRNA-dihydrouridine synthase; KEGG: dia:Dtpsy_2544 dihydrouridine synthase DuS; dihydrouridine synthase DuS	1241988..1243007	Alicycliphilus denitrificans K601	10482220
YP_004387113.1	CDS	Alide2_1193	NC_015422.1	1242967	1244577	R	KEGG: dia:Dtpsy_2543 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase	complement(1242967..1244577)	Alicycliphilus denitrificans K601	10482221
YP_004387114.1	CDS	Alide2_1194	NC_015422.1	1244601	1245713	R	TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: dia:Dtpsy_2542 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; riboflavin biosynthesis protein RibD	complement(1244601..1245713)	Alicycliphilus denitrificans K601	10482222
YP_004387115.1	CDS	Alide2_1195	NC_015422.1	1245751	1246185	R	KEGG: dia:Dtpsy_2540 fimbrial protein pilin; fimbrial protein pilin	complement(1245751..1246185)	Alicycliphilus denitrificans K601	10482223
YP_004387116.1	CDS	Alide2_1196	NC_015422.1	1246196	1249933	R	PFAM: PilC domain; KEGG: dac:Daci_5197 FG-GAP repeat-containing protein; PilC domain-containing protein	complement(1246196..1249933)	Alicycliphilus denitrificans K601	10482224
YP_004387117.1	CDS	Alide2_1197	NC_015422.1	1250025	1250774	R	KEGG: dac:Daci_5196 hypothetical protein; hypothetical protein	complement(1250025..1250774)	Alicycliphilus denitrificans K601	10482225
YP_004387118.1	CDS	Alide2_1198	NC_015422.1	1250786	1251661	R	KEGG: dac:Daci_5195 hypothetical protein; hypothetical protein	complement(1250786..1251661)	Alicycliphilus denitrificans K601	10482226
YP_004387119.1	CDS	Alide2_1199	NC_015422.1	1251664	1252305	R	TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: dac:Daci_5194 type IV pilus modification protein PilV; type IV pilus modification protein PilV	complement(1251664..1252305)	Alicycliphilus denitrificans K601	10482227
YP_004387120.1	CDS	Alide2_1200	NC_015422.1	1252312	1252818	R	PFAM: General secretion pathway, GspH; KEGG: ajs:Ajs_3182 putative type-4 fimbrial pilin related signal peptide protein; general secretion pathway, GspH	complement(1252312..1252818)	Alicycliphilus denitrificans K601	10482228
YP_004387121.1	CDS	Alide2_1201	NC_015422.1	1253027	1254001	D	KEGG: ajs:Ajs_3180 adenosylcobinamide-phosphate synthase; TIGRFAM: Cobalamin biosynthesis CobD/CbiB; PFAM: Cobalamin biosynthesis CobD/CbiB; cobalamin biosynthesis protein CobD	1253027..1254001	Alicycliphilus denitrificans K601	10482229
YP_004387122.1	CDS	Alide2_1202	NC_015422.1	1253994	1254980	D	KEGG: dia:Dtpsy_2532 aminotransferase class I and II; class I and II aminotransferase	1253994..1254980	Alicycliphilus denitrificans K601	10482230
YP_004387123.1	CDS	Alide2_1203	NC_015422.1	1254977	1256449	D	TIGRFAM: Cobyric acid synthase CobQ; HAMAP: Cobyric acid synthase CobQ; KEGG: ajs:Ajs_3178 adenosylcobyric acid synthase (glutamine-hydrolysing); PFAM: CobB/CobQ-like glutamine amidotransferase; Cobyrinic acid a,c-diamide synthase; Cobyric acid synthase	1254977..1256449	Alicycliphilus denitrificans K601	10482231
YP_004387124.1	CDS	Alide2_1204	NC_015422.1	1256508	1257566	D	TIGRFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic; KEGG: ajs:Ajs_3176 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like; nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase	1256508..1257566	Alicycliphilus denitrificans K601	10482232
YP_004387125.1	CDS	Alide2_1205	NC_015422.1	1257656	1258159	D	PFAM: Appr-1-p processing; KEGG: pag:PLES_35831 hypothetical protein; Appr-1-p processing domain-containing protein	1257656..1258159	Alicycliphilus denitrificans K601	10482233
YP_004387126.1	CDS	Alide2_1206	NC_015422.1	1258177	1258815	R	SMART: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; Helix-hairpin-helix DNA-binding motif, class 1; TIGRFAM: Endonuclease III/Nth; KEGG: ajs:Ajs_3170 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD domain; Helix-hairpin-helix motif; Endonuclease III-like, iron-sulphur cluster loop motif; endonuclease III	complement(1258177..1258815)	Alicycliphilus denitrificans K601	10482234
YP_004387127.1	CDS	Alide2_1207	NC_015422.1	1258812	1259765	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2826 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1258812..1259765)	Alicycliphilus denitrificans K601	10482235
YP_004387128.1	CDS	Alide2_1208	NC_015422.1	1259876	1261339	D	PFAM: Amidase; KEGG: dac:Daci_2827 amidase; amidase	1259876..1261339	Alicycliphilus denitrificans K601	10482236
YP_004387129.1	CDS	Alide2_1209	NC_015422.1	1261375	1262361	D	KEGG: dac:Daci_2828 hypothetical protein; hypothetical protein	1261375..1262361	Alicycliphilus denitrificans K601	10482237
YP_004387130.1	CDS	Alide2_1210	NC_015422.1	1262358	1262828	R	KEGG: dac:Daci_3099 AraC family transcriptional regulator; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding; transcription activator effector binding protein	complement(1262358..1262828)	Alicycliphilus denitrificans K601	10482238
YP_004387131.1	CDS	Alide2_1211	NC_015422.1	1262981	1264174	D	KEGG: aav:Aave_1563 GntR family transcriptional regulator; PFAM: Aminotransferase, class I/classII; GntR family transcriptional regulator	1262981..1264174	Alicycliphilus denitrificans K601	10482239
YP_004387132.1	CDS	Alide2_1212	NC_015422.1	1264176	1264376	D	PFAM: SlyX; KEGG: dia:Dtpsy_2515 SlyX family protein; SlyX family protein	1264176..1264376	Alicycliphilus denitrificans K601	10482240
YP_004387133.1	CDS	Alide2_1213	NC_015422.1	1264454	1265455	D	PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_3167 aldo/keto reductase; NADP-dependent oxidoreductase domain-containing protein	1264454..1265455	Alicycliphilus denitrificans K601	10482241
YP_004387134.1	CDS	Alide2_1214	NC_015422.1	1265458	1265898	D	PFAM: Copper resistance D; KEGG: ajs:Ajs_3166 hypothetical protein; copper resistance D domain-containing protein	1265458..1265898	Alicycliphilus denitrificans K601	10482242
YP_004387135.1	CDS	Alide2_1215	NC_015422.1	1265898	1266122	D	KEGG: dia:Dtpsy_2512 hypothetical protein; hypothetical protein	1265898..1266122	Alicycliphilus denitrificans K601	10482243
YP_004387136.1	CDS	Alide2_1216	NC_015422.1	1266119	1266490	R	KEGG: aav:Aave_1570 globin-like protein; globin-like protein	complement(1266119..1266490)	Alicycliphilus denitrificans K601	10482244
YP_004387137.1	CDS	Alide2_1217	NC_015422.1	1266493	1267224	R	KEGG: dia:Dtpsy_2511 hemerythrin HHE cation binding domain protein; TIGRFAM: Iron-sulfur cluster repair di-iron protein; PFAM: Domain of unknown function DUF542, ScdA N-terminal; Haemerythrin/HHE cation-binding motif; iron-sulfur cluster repair di-iron protein	complement(1266493..1267224)	Alicycliphilus denitrificans K601	10482245
YP_004387138.1	CDS	Alide2_1218	NC_015422.1	1267310	1267801	D	KEGG: dia:Dtpsy_2510 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator	1267310..1267801	Alicycliphilus denitrificans K601	10482246
YP_004387139.1	CDS	Alide2_1219	NC_015422.1	1268102	1270024	D	KEGG: ctt:CtCNB1_1949 putative serine protein kinase, PrkA; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; putative serine protein kinase, PrkA	1268102..1270024	Alicycliphilus denitrificans K601	10482247
YP_004387140.1	CDS	Alide2_1220	NC_015422.1	1270069	1271337	D	KEGG: dac:Daci_2328 hypothetical protein; HAMAP: Uncharacterised protein family UPF0229; PFAM: Uncharacterised protein family UPF0229; hypothetical protein	1270069..1271337	Alicycliphilus denitrificans K601	10482248
YP_004387141.1	CDS	Alide2_1221	NC_015422.1	1271334	1272965	D	PFAM: Sporulation stage V, protein R; KEGG: dac:Daci_2329 SpoVR family protein; SpoVR family protein	1271334..1272965	Alicycliphilus denitrificans K601	10482249
YP_004387142.1	CDS	Alide2_1222	NC_015422.1	1273092	1273877	R	KEGG: dia:Dtpsy_2507 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein; lipoprotein, YaeC family	complement(1273092..1273877)	Alicycliphilus denitrificans K601	10482250
YP_004387143.1	CDS	Alide2_1223	NC_015422.1	1274014	1275078	R	KEGG: ajs:Ajs_3313 histidine kinase internal region; PFAM: Signal transduction histidine kinase, internal region; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase	complement(1274014..1275078)	Alicycliphilus denitrificans K601	10482251
YP_004387144.1	CDS	Alide2_1224	NC_015422.1	1275129	1276589	D	TIGRFAM: Argininosuccinate lyase; KEGG: dia:Dtpsy_2664 argininosuccinate lyase; PFAM: Lyase 1, N-terminal; argininosuccinate lyase	1275129..1276589	Alicycliphilus denitrificans K601	10482252
YP_004387145.1	CDS	Alide2_1225	NC_015422.1	1276607	1277581	D	KEGG: ajs:Ajs_3311 hypothetical protein; hypothetical protein	1276607..1277581	Alicycliphilus denitrificans K601	10482253
YP_004387146.1	CDS	Alide2_1226	NC_015422.1	1277713	1283649	D	PFAM: Alpha-2-macroglobulin, N-terminal; Alpha-2-macroglobulin, N-terminal 2; Alpha-2-macroglobulin; KEGG: dia:Dtpsy_2661 alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain-containing protein	1277713..1283649	Alicycliphilus denitrificans K601	10482254
YP_004387147.1	CDS	Alide2_1227	NC_015422.1	1283684	1284766	D	PFAM: Metallo-dependent phosphatase; KEGG: dac:Daci_4972 metallophosphoesterase; metallophosphoesterase	1283684..1284766	Alicycliphilus denitrificans K601	10482255
YP_004387148.1	CDS	Alide2_1228	NC_015422.1	1284876	1285757	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2067 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1284876..1285757)	Alicycliphilus denitrificans K601	10482256
YP_004387149.1	CDS	Alide2_1229	NC_015422.1	1285890	1286882	D	KEGG: vap:Vapar_4821 hypothetical protein; hypothetical protein	1285890..1286882	Alicycliphilus denitrificans K601	10482257
YP_004387150.1	CDS	Alide2_1230	NC_015422.1	1286890	1287885	D	PFAM: Asparaginase/glutaminase; KEGG: axy:AXYL_04759 L-asparaginase 1; SMART: Asparaginase/glutaminase; asparaginase	1286890..1287885	Alicycliphilus denitrificans K601	10482258
YP_004387151.1	CDS	Alide2_1231	NC_015422.1	1287925	1289082	D	KEGG: rme:Rmet_5425 putative butyryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	1287925..1289082	Alicycliphilus denitrificans K601	10482259
YP_004387152.1	CDS	Alide2_1232	NC_015422.1	1289082	1291181	D	KEGG: dac:Daci_1885 CoA-binding domain-containing protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein	1289082..1291181	Alicycliphilus denitrificans K601	10482260
YP_004387153.1	CDS	Alide2_1233	NC_015422.1	1291178	1292827	D	KEGG: gpb:HDN1F_16010 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Isovaleryl-CoA dehydrogenase	1291178..1292827	Alicycliphilus denitrificans K601	10482261
YP_004387154.1	CDS	Alide2_1234	NC_015422.1	1292961	1294208	D	KEGG: bbr:BB0464 putative dehydratase/racemase; putative dehydratase/racemase	1292961..1294208	Alicycliphilus denitrificans K601	10482262
YP_004387155.1	CDS	Alide2_1235	NC_015422.1	1294533	1295414	D	KEGG: dia:Dtpsy_2653 hypothetical protein; hypothetical protein	1294533..1295414	Alicycliphilus denitrificans K601	10482263
YP_004387156.1	CDS	Alide2_1236	NC_015422.1	1295414	1297579	D	TIGRFAM: Penicillin-binding protein 1C; KEGG: ajs:Ajs_3299 penicillin-binding protein 1C; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; Penicillin-binding, C-terminal; penicillin-binding protein 1C	1295414..1297579	Alicycliphilus denitrificans K601	10482264
YP_004387157.1	CDS	Alide2_1237	NC_015422.1	1297644	1298165	D	KEGG: dac:Daci_3482 hypothetical protein; hypothetical protein	1297644..1298165	Alicycliphilus denitrificans K601	10482265
YP_004387158.1	CDS	Alide2_1238	NC_015422.1	1298186	1299418	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; HAMP linker domain; KEGG: dac:Daci_3483 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; HAMP linker domain; diguanylate cyclase	1298186..1299418	Alicycliphilus denitrificans K601	10482266
YP_004387159.1	CDS	Alide2_1239	NC_015422.1	1299415	1299930	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dac:Daci_3484 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein	1299415..1299930	Alicycliphilus denitrificans K601	10482267
YP_004387160.1	CDS	Alide2_1240	NC_015422.1	1300023	1301195	D	KEGG: ajs:Ajs_3298 (S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome)	1300023..1301195	Alicycliphilus denitrificans K601	10482268
YP_004387161.1	CDS	Alide2_1241	NC_015422.1	1301368	1302300	D	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2650 hypothetical protein; hypothetical protein	1301368..1302300	Alicycliphilus denitrificans K601	10482269
YP_004387162.1	CDS	Alide2_1242	NC_015422.1	1302313	1304151	R	KEGG: bbr:BB0981 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Isovaleryl-CoA dehydrogenase	complement(1302313..1304151)	Alicycliphilus denitrificans K601	10482270
YP_004387163.1	CDS	Alide2_1243	NC_015422.1	1304188	1305414	R	KEGG: bbr:BB0982 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(1304188..1305414)	Alicycliphilus denitrificans K601	10482271
YP_004387164.1	CDS	Alide2_1244	NC_015422.1	1305445	1306413	R	KEGG: bbr:BB0983 hypothetical protein; hypothetical protein	complement(1305445..1306413)	Alicycliphilus denitrificans K601	10482272
YP_004387165.1	CDS	Alide2_1245	NC_015422.1	1306552	1307445	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bbr:BB0984 LysR family transcriptional regulator; LysR family transcriptional regulator	1306552..1307445	Alicycliphilus denitrificans K601	10482273
YP_004387166.1	CDS	Alide2_1246	NC_015422.1	1307521	1308714	D	KEGG: aav:Aave_1964 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase	1307521..1308714	Alicycliphilus denitrificans K601	10482274
YP_004387167.1	CDS	Alide2_1247	NC_015422.1	1308876	1310438	D	TIGRFAM: PAS; PFAM: Chemotaxis methyl-accepting receptor, signalling; PAS fold-3; KEGG: dia:Dtpsy_2648 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: Chemotaxis methyl-accepting receptor, signalling; PAS; PAC motif; Pas/Pac sensor-containing methyl-accepting chemotaxis sensory transducer	1308876..1310438	Alicycliphilus denitrificans K601	10482275
YP_004387168.1	CDS	Alide2_1248	NC_015422.1	1310468	1311313	R	TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, YqcD; KEGG: ajs:Ajs_3294 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase	complement(1310468..1311313)	Alicycliphilus denitrificans K601	10482276
YP_004387169.1	CDS	Alide2_1249	NC_015422.1	1311369	1312223	R	PFAM: Oxoglutarate/iron-dependent oxygenase; KEGG: ajs:Ajs_3293 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; Procollagen-proline dioxygenase	complement(1311369..1312223)	Alicycliphilus denitrificans K601	10482277
YP_004387170.1	CDS	Alide2_1250	NC_015422.1	1312220	1312993	R	PFAM: Uncharacterised protein family UPF0246; KEGG: dia:Dtpsy_2644 hypothetical protein; hypothetical protein	complement(1312220..1312993)	Alicycliphilus denitrificans K601	10482278
YP_004387171.1	CDS	Alide2_1251	NC_015422.1	1313152	1316238	R	TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_3290 ribonuclease E; SMART: RNA-binding domain, S1; Rne/Rng family ribonuclease	complement(1313152..1316238)	Alicycliphilus denitrificans K601	10482279
YP_004387172.1	CDS	Alide2_1252	NC_015422.1	1316828	1317847	D	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; Zinc finger, FLYWCH-type; KEGG: dia:Dtpsy_2642 pseudouridine synthase, RluA family; SMART: RNA-binding S4; RluA family pseudouridine synthase	1316828..1317847	Alicycliphilus denitrificans K601	10482280
YP_004387173.1	CDS	Alide2_1253	NC_015422.1	1317840	1318511	D	KEGG: dia:Dtpsy_2641 HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase	1317840..1318511	Alicycliphilus denitrificans K601	10482281
YP_004387174.1	CDS	Alide2_1254	NC_015422.1	1318514	1318885	D	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: dia:Dtpsy_2640 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein	1318514..1318885	Alicycliphilus denitrificans K601	10482282
YP_004387175.1	CDS	Alide2_1255	NC_015422.1	1318890	1319930	D	PFAM: Peptidase S49; KEGG: dia:Dtpsy_2639 peptidase S49; peptidase S49	1318890..1319930	Alicycliphilus denitrificans K601	10482283
YP_004387176.1	CDS	Alide2_1256	NC_015422.1	1319935	1320720	R	PFAM: Tetrapyrrole methylase; KEGG: dia:Dtpsy_2638 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase	complement(1319935..1320720)	Alicycliphilus denitrificans K601	10482284
YP_004387177.1	CDS	Alide2_1257	NC_015422.1	1320717	1321316	R	KEGG: dia:Dtpsy_2637 maf protein; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; maf protein	complement(1320717..1321316)	Alicycliphilus denitrificans K601	10482285
YP_004387178.1	CDS	Alide2_1258	NC_015422.1	1321343	1321894	D	PFAM: Protein of unknown function DUF177; KEGG: dia:Dtpsy_2636 protein of unknown function DUF177; hypothetical protein	1321343..1321894	Alicycliphilus denitrificans K601	10482286
YP_004387179.1	CDS	Alide2_1259	NC_015422.1	1322031	1322213	D	KEGG: aav:Aave_1181 50S ribosomal protein L32; TIGRFAM: Ribosomal protein L32p; PFAM: Ribosomal protein L32p; 50S ribosomal protein L32	1322031..1322213	Alicycliphilus denitrificans K601	10482287
YP_004387180.1	CDS	Alide2_1260	NC_015422.1	1322336	1323367	D	PFAM: Fatty acid synthesis PlsX protein; manually curated; TIGRFAM: Phospholipid biosynthesis protein, PlsX-like; KEGG: dia:Dtpsy_2634 putative glycerol-3-phosphate acyltransferase PlsX; HAMAP: Phospholipid biosynthesis protein, PlsX-like; phosphate acyltransferase	1322336..1323367	Alicycliphilus denitrificans K601	10482288
YP_004387181.1	CDS	Alide2_1261	NC_015422.1	1323389	1324369	D	TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: dia:Dtpsy_2633 3-oxoacyl-(acyl carrier protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III	1323389..1324369	Alicycliphilus denitrificans K601	10482289
YP_004387182.1	CDS	Alide2_1262	NC_015422.1	1324431	1325384	D	TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; KEGG: ajs:Ajs_3279 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase	1324431..1325384	Alicycliphilus denitrificans K601	10482290
YP_004387183.1	CDS	Alide2_1263	NC_015422.1	1325381	1326118	D	KEGG: dia:Dtpsy_2631 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	1325381..1326118	Alicycliphilus denitrificans K601	10482291
YP_004387184.1	CDS	Alide2_1264	NC_015422.1	1326222	1326461	D	SMART: Polyketide synthase, phosphopantetheine-binding; TIGRFAM: Acyl carrier protein (ACP); KEGG: ctt:CtCNB1_0973 acyl carrier protein; HAMAP: Acyl carrier protein (ACP); PFAM: Phosphopantetheine-binding; acyl carrier protein	1326222..1326461	Alicycliphilus denitrificans K601	10482292
YP_004387185.1	CDS	Alide2_1265	NC_015422.1	1326520	1327764	D	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; KEGG: dia:Dtpsy_2629 3-oxoacyl-(acyl-carrier-protein) synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase II	1326520..1327764	Alicycliphilus denitrificans K601	10482293
YP_004387186.1	CDS	Alide2_1266	NC_015422.1	1327827	1328348	D	KEGG: dia:Dtpsy_2628 hypothetical protein; hypothetical protein	1327827..1328348	Alicycliphilus denitrificans K601	10482294
YP_004387187.1	CDS	Alide2_1267	NC_015422.1	1328345	1328980	D	KEGG: dia:Dtpsy_2627 RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit	1328345..1328980	Alicycliphilus denitrificans K601	10482295
YP_004387188.1	CDS	Alide2_1268	NC_015422.1	1329005	1329655	D	PFAM: Anti sigma-E protein RseA, N-terminal; KEGG: dia:Dtpsy_2626 anti sigma-E protein, RseA; anti sigma-E protein RseA family protein	1329005..1329655	Alicycliphilus denitrificans K601	10482296
YP_004387189.1	CDS	Alide2_1269	NC_015422.1	1329766	1330764	D	KEGG: dia:Dtpsy_2625 sigma E regulatory protein, MucB/RseB; manually curated; PFAM: MucB/RseB; sigma E regulatory protein, MucB/RseB	1329766..1330764	Alicycliphilus denitrificans K601	10482297
YP_004387190.1	CDS	Alide2_1270	NC_015422.1	1330874	1332355	D	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: dia:Dtpsy_2624 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; protease Do	1330874..1332355	Alicycliphilus denitrificans K601	10482298
YP_004387191.1	CDS	Alide2_1271	NC_015422.1	1332780	1334588	D	TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; GTP-binding protein LepA, C-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; KEGG: dia:Dtpsy_2623 GTP-binding protein LepA; SMART: Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein LepA	1332780..1334588	Alicycliphilus denitrificans K601	10482299
YP_004387192.1	CDS	Alide2_1272	NC_015422.1	1334595	1335569	D	KEGG: dia:Dtpsy_2622 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; Peptidase S26, conserved region; signal peptidase I	1334595..1335569	Alicycliphilus denitrificans K601	10482300
YP_004387193.1	CDS	Alide2_1273	NC_015422.1	1335577	1335948	D	KEGG: dia:Dtpsy_2621 putative transmembrane protein; putative transmembrane protein	1335577..1335948	Alicycliphilus denitrificans K601	10482301
YP_004387194.1	CDS	Alide2_1274	NC_015422.1	1335951	1336637	D	KEGG: ajs:Ajs_3267 ribonuclease III; PFAM: Ribonuclease III; Double-stranded RNA-binding; TIGRFAM: Ribonuclease III, bacterial; HAMAP: Ribonuclease III, bacterial; SMART: Ribonuclease III; Double-stranded RNA-binding; ribonuclease 3	1335951..1336637	Alicycliphilus denitrificans K601	10482302
YP_004387195.1	CDS	Alide2_1275	NC_015422.1	1336706	1337647	D	KEGG: dia:Dtpsy_2619 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; GTP-binding protein Era	1336706..1337647	Alicycliphilus denitrificans K601	10482303
YP_004387196.1	CDS	Alide2_1276	NC_015422.1	1337869	1338642	D	KEGG: ajs:Ajs_3265 DNA repair protein RecO; TIGRFAM: Recombination protein O, RecO; PFAM: DNA replication/recombination mediator RecO, N-terminal; Recombination protein O, RecO; DNA repair protein RecO	1337869..1338642	Alicycliphilus denitrificans K601	10482304
YP_004387197.1	CDS	Alide2_1277	NC_015422.1	1338639	1339406	D	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: dia:Dtpsy_2616 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; pyridoxal phosphate biosynthetic protein PdxJ	1338639..1339406	Alicycliphilus denitrificans K601	10482305
YP_004387198.1	CDS	Alide2_1278	NC_015422.1	1339464	1339856	D	KEGG: dia:Dtpsy_2615 4'-phosphopantetheinyl transferase; TIGRFAM: Phosphopantethiene-protein transferase; Holo-[acyl carrier protein] synthase; PFAM: 4'-phosphopantetheinyl transferase; phosphopantetheine-protein transferase	1339464..1339856	Alicycliphilus denitrificans K601	10482306
YP_004387199.1	CDS	Alide2_1279	NC_015422.1	1339921	1341003	D	PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: dia:Dtpsy_2614 beta-N-acetylhexosaminidase; glycoside hydrolase family 3 domain-containing protein	1339921..1341003	Alicycliphilus denitrificans K601	10482307
YP_004387200.1	CDS	Alide2_1280	NC_015422.1	1341000	1342067	D	KEGG: ajs:Ajs_3260 6-phosphofructokinase; PFAM: Phosphofructokinase domain; 6-phosphofructokinase	1341000..1342067	Alicycliphilus denitrificans K601	10482308
YP_004387201.1	CDS	Alide2_1281	NC_015422.1	1342148	1342858	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2610 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(1342148..1342858)	Alicycliphilus denitrificans K601	10482309
YP_004387202.1	CDS	Alide2_1282	NC_015422.1	1342858	1343631	R	PFAM: ABC transporter-like; KEGG: xtr:100485612 putative ribose/galactose/methyl galactoside import ATP-binding protein-like; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(1342858..1343631)	Alicycliphilus denitrificans K601	10482310
YP_004387203.1	CDS	Alide2_1283	NC_015422.1	1343631	1344890	R	PFAM: ABC transporter permease; High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal; KEGG: dia:Dtpsy_2608 leucine/isoleucine/valine transporter permease subunit; ABC transporter permease	complement(1343631..1344890)	Alicycliphilus denitrificans K601	10482311
YP_004387204.1	CDS	Alide2_1284	NC_015422.1	1344890	1345816	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2607 inner-membrane translocator; ABC transporter permease	complement(1344890..1345816)	Alicycliphilus denitrificans K601	10482312
YP_004387205.1	CDS	Alide2_1285	NC_015422.1	1345937	1347055	R	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(1345937..1347055)	Alicycliphilus denitrificans K601	10482313
YP_004387206.1	CDS	Alide2_1286	NC_015422.1	1347248	1347910	R	PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3252 small-conductance mechanosensitive channel-like protein; MscS Mechanosensitive ion channel	complement(1347248..1347910)	Alicycliphilus denitrificans K601	10482314
YP_004387207.1	CDS	Alide2_1287	NC_015422.1	1347907	1349454	R	TIGRFAM: Lysyl-tRNA synthetase, class II; KEGG: ajs:Ajs_3250 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; lysyl-tRNA synthetase	complement(1347907..1349454)	Alicycliphilus denitrificans K601	10482315
YP_004387208.1	CDS	Alide2_1288	NC_015422.1	1349494	1350120	R	PFAM: Bacterial sugar transferase; KEGG: lch:Lcho_0300 sugar transferase; sugar transferase	complement(1349494..1350120)	Alicycliphilus denitrificans K601	10482316
YP_004387209.1	CDS	Alide2_1289	NC_015422.1	1350127	1351299	R	KEGG: mpt:Mpe_A0607 lipopolysaccharide biosynthesis protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase	complement(1350127..1351299)	Alicycliphilus denitrificans K601	10482317
YP_004387210.1	CDS	Alide2_1290	NC_015422.1	1351296	1351991	R	PFAM: Methyltransferase type 11; KEGG: mpt:Mpe_A0605 hypothetical protein; type 11 methyltransferase	complement(1351296..1351991)	Alicycliphilus denitrificans K601	10482318
YP_004387211.1	CDS	Alide2_1291	NC_015422.1	1351988	1353016	R	PFAM: Glycosyl transferase, family 2; KEGG: bpt:Bpet1524 glycosyltransferase; family 2 glycosyl transferase	complement(1351988..1353016)	Alicycliphilus denitrificans K601	10482319
YP_004387212.1	CDS	Alide2_1292	NC_015422.1	1353013	1354062	R	PFAM: Glycosyl transferase, group 1; KEGG: bpt:Bpet1525 glycosyltransferase; group 1 glycosyl transferase	complement(1353013..1354062)	Alicycliphilus denitrificans K601	10482320
YP_004387213.1	CDS	Alide2_1293	NC_015422.1	1354064	1354666	R	KEGG: bpt:Bpet1526 acetyltransferase; acetyltransferase	complement(1354064..1354666)	Alicycliphilus denitrificans K601	10482321
YP_004387214.1	CDS	Alide2_1294	NC_015422.1	1354650	1355882	R	PFAM: Polysaccharide biosynthesis protein; KEGG: bpt:Bpet1527 hypothetical protein; polysaccharide biosynthesis protein	complement(1354650..1355882)	Alicycliphilus denitrificans K601	10482322
YP_004387215.1	CDS	Alide2_1295	NC_015422.1	1355879	1357780	R	PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD	complement(1355879..1357780)	Alicycliphilus denitrificans K601	10482323
YP_004387216.1	CDS	Alide2_1296	NC_015422.1	1357817	1358452	R	PFAM: Peptidase S16, lon N-terminal; KEGG: xtr:100498456 hypothetical protein LOC100498456; peptidase S16 lon domain-containing protein	complement(1357817..1358452)	Alicycliphilus denitrificans K601	10482324
YP_004387217.1	CDS	Alide2_1297	NC_015422.1	1358546	1359094	D	PFAM: Uncharacterised protein family Ycf19; KEGG: dia:Dtpsy_2595 protein of unknown function YGGT; hypothetical protein	1358546..1359094	Alicycliphilus denitrificans K601	10482325
YP_004387218.1	CDS	Alide2_1298	NC_015422.1	1359171	1360043	R	TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; KEGG: ajs:Ajs_3241 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; PFAM: Carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta	complement(1359171..1360043)	Alicycliphilus denitrificans K601	10482326
YP_004387219.1	CDS	Alide2_1299	NC_015422.1	1360072	1360881	R	TIGRFAM: Tryptophan synthase, alpha chain; KEGG: ajs:Ajs_3240 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; tryptophan synthase subunit alpha	complement(1360072..1360881)	Alicycliphilus denitrificans K601	10482327
YP_004387220.1	CDS	Alide2_1300	NC_015422.1	1360878	1362146	R	TIGRFAM: Tryptophan synthase, beta chain; KEGG: ajs:Ajs_3239 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase subunit beta	complement(1360878..1362146)	Alicycliphilus denitrificans K601	10482328
YP_004387221.1	CDS	Alide2_1301	NC_015422.1	1362147	1362863	R	KEGG: ajs:Ajs_3238 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase	complement(1362147..1362863)	Alicycliphilus denitrificans K601	10482329
YP_004387222.1	CDS	Alide2_1302	NC_015422.1	1362860	1363678	R	KEGG: dia:Dtpsy_2590 tRNA pseudouridine synthase A; TIGRFAM: Pseudouridine synthase I, TruA; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A	complement(1362860..1363678)	Alicycliphilus denitrificans K601	10482330
YP_004387223.1	CDS	Alide2_1303	NC_015422.1	1363743	1366415	R	TIGRFAM: Motility protein FimV, N-terminal; Motility protein FimV, C-terminal; KEGG: ajs:Ajs_3236 putative transmembrane protein; FimV N-terminal domain-containing protein	complement(1363743..1366415)	Alicycliphilus denitrificans K601	10482331
YP_004387224.1	CDS	Alide2_1304	NC_015422.1	1366638	1367750	R	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: Aspartate-semialdehyde dehydrogenase, proteobacteria; KEGG: ctt:CtCNB1_1004 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD-binding; aspartate-semialdehyde dehydrogenase	complement(1366638..1367750)	Alicycliphilus denitrificans K601	10482332
YP_004387225.1	CDS	Alide2_1305	NC_015422.1	1368020	1369090	R	TIGRFAM: Isopropylmalate dehydrogenase; KEGG: dia:Dtpsy_2586 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase	complement(1368020..1369090)	Alicycliphilus denitrificans K601	10482333
YP_004387226.1	CDS	Alide2_1306	NC_015422.1	1369165	1369815	R	KEGG: dia:Dtpsy_2585 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase, small subunit	complement(1369165..1369815)	Alicycliphilus denitrificans K601	10482334
YP_004387227.1	CDS	Alide2_1307	NC_015422.1	1369839	1369964	R	PFAM: Entericidin EcnAB; KEGG: dac:Daci_5236 entericidin EcnAB; Entericidin EcnAB	complement(1369839..1369964)	Alicycliphilus denitrificans K601	10482335
YP_004387228.1	CDS	Alide2_1308	NC_015422.1	1369988	1371409	R	KEGG: ajs:Ajs_3229 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase, large subunit	complement(1369988..1371409)	Alicycliphilus denitrificans K601	10482336
YP_004387229.1	CDS	Alide2_1309	NC_015422.1	1371430	1372368	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2581 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(1371430..1372368)	Alicycliphilus denitrificans K601	10482337
YP_004387230.1	CDS	Alide2_1310	NC_015422.1	1372557	1373921	R	KEGG: dia:Dtpsy_2580 beta-lactamase domain protein; PFAM: Beta-Casp domain; RNA-metabolising metallo-beta-lactamase; Beta-lactamase-like; SMART: Beta-lactamase-like; beta-Casp domain-containing protein	complement(1372557..1373921)	Alicycliphilus denitrificans K601	10482338
YP_004387231.1	CDS	Alide2_1311	NC_015422.1	1373962	1375110	R	PFAM: Cytochrome P450; KEGG: ajs:Ajs_3226 cytochrome P450; cytochrome P450	complement(1373962..1375110)	Alicycliphilus denitrificans K601	10482339
YP_004387232.1	CDS	Alide2_1312	NC_015422.1	1375129	1376613	R	KEGG: ajs:Ajs_3225 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; UbiD family decarboxylase	complement(1375129..1376613)	Alicycliphilus denitrificans K601	10482340
YP_004387233.1	CDS	Alide2_1313	NC_015422.1	1376669	1377253	R	KEGG: dia:Dtpsy_2577 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	complement(1376669..1377253)	Alicycliphilus denitrificans K601	10482341
YP_004387234.1	CDS	Alide2_1314	NC_015422.1	1377250	1377657	R	PFAM: DGC; KEGG: ajs:Ajs_3223 hypothetical protein; DGC domain-containing protein	complement(1377250..1377657)	Alicycliphilus denitrificans K601	10482342
YP_004387235.1	CDS	Alide2_1315	NC_015422.1	1377654	1378172	R	PFAM: SCP2 sterol-binding domain; KEGG: ajs:Ajs_3222 hypothetical protein; Sterol-binding domain-containing protein	complement(1377654..1378172)	Alicycliphilus denitrificans K601	10482343
YP_004387236.1	CDS	Alide2_1316	NC_015422.1	1378192	1379115	R	PFAM: Peptidase U32; KEGG: ajs:Ajs_3221 peptidase U32; peptidase U32	complement(1378192..1379115)	Alicycliphilus denitrificans K601	10482344
YP_004387237.1	CDS	Alide2_1317	NC_015422.1	1379121	1380242	R	PFAM: Peptidase U32; KEGG: ajs:Ajs_3220 peptidase U32; peptidase U32	complement(1379121..1380242)	Alicycliphilus denitrificans K601	10482345
YP_004387238.1	CDS	Alide2_1318	NC_015422.1	1380441	1381811	D	KEGG: rfr:Rfer_2475 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; Tryptophanase	1380441..1381811	Alicycliphilus denitrificans K601	10482346
YP_004387239.1	CDS	Alide2_1319	NC_015422.1	1381885	1382550	R	KEGG: maq:Maqu_1010 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein	complement(1381885..1382550)	Alicycliphilus denitrificans K601	10482347
YP_004387240.1	CDS	Alide2_1320	NC_015422.1	1382765	1383898	R	TIGRFAM: Chaperone DnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, cysteine-rich domain; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_2572 chaperone protein DnaJ; SMART: Heat shock protein DnaJ, N-terminal; chaperone protein DnaJ	complement(1382765..1383898)	Alicycliphilus denitrificans K601	10482348
YP_004387241.1	CDS	Alide2_1321	NC_015422.1	1383994	1385937	R	KEGG: dia:Dtpsy_2571 molecular chaperone DnaK; TIGRFAM: Chaperone DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK	complement(1383994..1385937)	Alicycliphilus denitrificans K601	10482349
YP_004387242.1	CDS	Alide2_1322	NC_015422.1	1386030	1386572	R	PFAM: GrpE nucleotide exchange factor; KEGG: dia:Dtpsy_2570 heat shock protein GrpE; GrpE protein	complement(1386030..1386572)	Alicycliphilus denitrificans K601	10482350
YP_004387243.1	CDS	Alide2_1323	NC_015422.1	1386808	1387182	D	KEGG: dia:Dtpsy_2569 30S ribosomal protein S6; TIGRFAM: Ribosomal protein S6; PFAM: Ribosomal protein S6; 30S ribosomal protein S6	1386808..1387182	Alicycliphilus denitrificans K601	10482351
YP_004387244.1	CDS	Alide2_1324	NC_015422.1	1387205	1387495	D	PFAM: Primosome PriB/single-strand DNA-binding; KEGG: dia:Dtpsy_2568 putative primosomal replication protein; single-strand binding protein/Primosomal replication protein n	1387205..1387495	Alicycliphilus denitrificans K601	10482352
YP_004387245.1	CDS	Alide2_1325	NC_015422.1	1387514	1387795	D	TIGRFAM: Ribosomal protein S18; HAMAP: Ribosomal protein S18; KEGG: aav:Aave_1230 30S ribosomal protein S18; PFAM: Ribosomal protein S18; 30S ribosomal protein S18	1387514..1387795	Alicycliphilus denitrificans K601	10482353
YP_004387246.1	CDS	Alide2_1326	NC_015422.1	1387810	1388262	D	KEGG: dia:Dtpsy_2566 50S ribosomal protein L9; TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; PFAM: Ribosomal protein L9, C-terminal; Ribosomal protein L9, N-terminal; 50S ribosomal protein L9	1387810..1388262	Alicycliphilus denitrificans K601	10482354
YP_004387247.1	CDS	Alide2_1327	NC_015422.1	1388384	1389862	D	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: dia:Dtpsy_2565 replicative DNA helicase; SMART: ATPase, AAA+ type, core; replicative DNA helicase	1388384..1389862	Alicycliphilus denitrificans K601	10482355
YP_004387248.1	CDS	Alide2_1328	NC_015422.1	1389933	1391465	D	KEGG: bpd:BURPS668_A2080 putative piperideine-6-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase domain; L-aminoadipate-semialdehyde dehydrogenase	1389933..1391465	Alicycliphilus denitrificans K601	10482356
YP_004387249.1	CDS	Alide2_1329	NC_015422.1	1391537	1393276	R	KEGG: dia:Dtpsy_2563 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; PhoH family protein	complement(1391537..1393276)	Alicycliphilus denitrificans K601	10482357
YP_004387250.1	CDS	Alide2_1330	NC_015422.1	1393433	1393921	R	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: dia:Dtpsy_2562 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen	complement(1393433..1393921)	Alicycliphilus denitrificans K601	10482358
YP_004387251.1	CDS	Alide2_1331	NC_015422.1	1394099	1394788	R	KEGG: ajs:Ajs_1106 hypothetical protein; hypothetical protein	complement(1394099..1394788)	Alicycliphilus denitrificans K601	10482359
YP_004387252.1	CDS	Alide2_1332	NC_015422.1	1395046	1395633	D	PFAM: Cytochrome b/b6, N-terminal; KEGG: dia:Dtpsy_1026 cytochrome b561; cytochrome b/b6 domain-containing protein	1395046..1395633	Alicycliphilus denitrificans K601	10482360
YP_004387253.1	CDS	Alide2_1333	NC_015422.1	1395630	1396250	D	KEGG: dia:Dtpsy_1027 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; YceI family protein	1395630..1396250	Alicycliphilus denitrificans K601	10482361
YP_004387254.1	CDS	Alide2_1334	NC_015422.1	1396305	1396880	D	KEGG: dia:Dtpsy_1028 YceI family protein; PFAM: Lipid/polyisoprenoid-binding, YceI-like; SMART: Lipid/polyisoprenoid-binding, YceI-like; YceI family protein	1396305..1396880	Alicycliphilus denitrificans K601	10482362
YP_004387255.1	CDS	Alide2_1335	NC_015422.1	1396950	1399259	R	PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: ajs:Ajs_1112 malic enzyme; SMART: Malic enzyme, NAD-binding; malate dehydrogenase	complement(1396950..1399259)	Alicycliphilus denitrificans K601	10482363
YP_004387256.1	CDS	Alide2_1336	NC_015422.1	1399397	1400884	R	KEGG: dac:Daci_2107 xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease	complement(1399397..1400884)	Alicycliphilus denitrificans K601	10482364
YP_004387257.1	CDS	Alide2_1337	NC_015422.1	1401235	1402710	D	KEGG: dia:Dtpsy_2395 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; methyl-accepting chemotaxis sensory transducer	1401235..1402710	Alicycliphilus denitrificans K601	10482365
YP_004387258.1	CDS	Alide2_1339	NC_015422.1	1403899	1405152	R	PFAM: Peptidase M20, dimerisation; Peptidase M20; KEGG: dia:Dtpsy_1035 peptidase dimerisation domain protein; peptidase dimerization domain-containing protein	complement(1403899..1405152)	Alicycliphilus denitrificans K601	10482367
YP_004387259.1	CDS	Alide2_1340	NC_015422.1	1405149	1406924	R	TIGRFAM: Amidase, hydantoinase/carbamoylase; 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1; KEGG: ajs:Ajs_1115 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Peptidase M20; hydantoinase/carbamoylase family amidase	complement(1405149..1406924)	Alicycliphilus denitrificans K601	10482368
YP_004387260.1	CDS	Alide2_1341	NC_015422.1	1406989	1407948	R	TIGRFAM: Putative urate catabolism protein; KEGG: dia:Dtpsy_1037 urate catabolism protein; PFAM: Polysaccharide deacetylase; urate catabolism protein	complement(1406989..1407948)	Alicycliphilus denitrificans K601	10482369
YP_004387261.1	CDS	Alide2_1342	NC_015422.1	1407945	1408622	R	KEGG: dia:Dtpsy_1038 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator	complement(1407945..1408622)	Alicycliphilus denitrificans K601	10482370
YP_004387262.1	CDS	Alide2_1343	NC_015422.1	1408677	1409591	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1039 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(1408677..1409591)	Alicycliphilus denitrificans K601	10482371
YP_004387263.1	CDS	Alide2_1344	NC_015422.1	1409718	1410785	D	TIGRFAM: Tartrate dehydrogenase; KEGG: ajs:Ajs_1120 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase	1409718..1410785	Alicycliphilus denitrificans K601	10482372
YP_004387264.1	CDS	Alide2_1345	NC_015422.1	1410820	1411803	D	KEGG: dia:Dtpsy_1041 hypothetical protein; hypothetical protein	1410820..1411803	Alicycliphilus denitrificans K601	10482373
YP_004387265.1	CDS	Alide2_1346	NC_015422.1	1411882	1413204	D	KEGG: ajs:Ajs_1122 hydroxypyruvate reductase; PFAM: MOFRL domain; hydroxypyruvate reductase	1411882..1413204	Alicycliphilus denitrificans K601	10482374
YP_004387266.1	CDS	Alide2_1347	NC_015422.1	1413232	1414125	R	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: axy:AXYL_05357 LysR family regulatory helix-turn-helix protein 171; LysR family transcriptional regulator	complement(1413232..1414125)	Alicycliphilus denitrificans K601	10482375
YP_004387267.1	CDS	Alide2_1348	NC_015422.1	1414323	1415651	D	KEGG: axy:AXYL_05358 2,2-dialkylglycine decarboxylase; PFAM: Aminotransferase class-III; 2,2-dialkylglycine decarboxylase (pyruvate)	1414323..1415651	Alicycliphilus denitrificans K601	10482376
YP_004387268.1	CDS	Alide2_1349	NC_015422.1	1415703	1416593	D	KEGG: lch:Lcho_4024 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	1415703..1416593	Alicycliphilus denitrificans K601	10482377
YP_004387269.1	CDS	Alide2_1350	NC_015422.1	1416672	1417601	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2116 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1416672..1417601)	Alicycliphilus denitrificans K601	10482378
YP_004387270.1	CDS	Alide2_1351	NC_015422.1	1417712	1419502	D	TIGRFAM: Glyoxylate carboligase; KEGG: dac:Daci_2117 glyoxylate carboligase; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; glyoxylate carboligase	1417712..1419502	Alicycliphilus denitrificans K601	10482379
YP_004387271.1	CDS	Alide2_1352	NC_015422.1	1419532	1420332	D	TIGRFAM: Hydroxypyruvate isomerase; KEGG: ctt:CtCNB1_3709 xylose isomerase-like TIM barrel; PFAM: Xylose isomerase, TIM barrel domain; hydroxypyruvate isomerase	1419532..1420332	Alicycliphilus denitrificans K601	10482380
YP_004387272.1	CDS	Alide2_1353	NC_015422.1	1420380	1421294	D	TIGRFAM: 2-hydroxy-3-oxopropionate reductase; KEGG: dac:Daci_2119 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase	1420380..1421294	Alicycliphilus denitrificans K601	10482381
YP_004387273.1	CDS	Alide2_1355	NC_015422.1	1421787	1422332	D	KEGG: dac:Daci_0940 hypothetical protein; hypothetical protein	1421787..1422332	Alicycliphilus denitrificans K601	10482383
YP_004387274.1	CDS	Alide2_1356	NC_015422.1	1422329	1424119	R	TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: dac:Daci_2120 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase	complement(1422329..1424119)	Alicycliphilus denitrificans K601	10482384
YP_004387275.1	CDS	Alide2_1357	NC_015422.1	1424262	1424612	D	TIGRFAM: Hydroxyisourate hydrolase; KEGG: dia:Dtpsy_1043 hydroxyisourate hydrolase; PFAM: Transthyretin/hydroxyisourate hydrolase; hydroxyisourate hydrolase	1424262..1424612	Alicycliphilus denitrificans K601	10482385
YP_004387276.1	CDS	Alide2_1358	NC_015422.1	1424771	1425298	R	KEGG: dia:Dtpsy_1044 hypothetical protein; hypothetical protein	complement(1424771..1425298)	Alicycliphilus denitrificans K601	10482386
YP_004387277.1	CDS	Alide2_1359	NC_015422.1	1425361	1426194	D	TIGRFAM: Xanthine dehydrogenase accessory protein XdhC; KEGG: ajs:Ajs_1125 hypothetical protein; xanthine dehydrogenase accessory protein XdhC	1425361..1426194	Alicycliphilus denitrificans K601	10482387
YP_004387278.1	CDS	Alide2_1360	NC_015422.1	1426476	1427693	D	PFAM: Protein of unknown function DUF989; KEGG: ajs:Ajs_1128 hypothetical protein; hypothetical protein	1426476..1427693	Alicycliphilus denitrificans K601	10482388
YP_004387279.1	CDS	Alide2_1361	NC_015422.1	1427811	1428377	D	TIGRFAM: Deoxycytidine triphosphate deaminase; KEGG: dia:Dtpsy_1050 deoxycytidine triphosphate deaminase; PFAM: DeoxyUTP pyrophosphatase domain; deoxycytidine triphosphate deaminase	1427811..1428377	Alicycliphilus denitrificans K601	10482389
YP_004387280.1	CDS	Alide2_1362	NC_015422.1	1428442	1429305	D	PFAM: Uncharacterised protein family, zinc metallopeptidase putative; KEGG: dia:Dtpsy_1052 protein of unknown function zinc metallopeptidase putative; hypothetical protein	1428442..1429305	Alicycliphilus denitrificans K601	10482390
YP_004387281.1	CDS	Alide2_1363	NC_015422.1	1429394	1430836	D	KEGG: dia:Dtpsy_1053 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein	1429394..1430836	Alicycliphilus denitrificans K601	10482391
YP_004387282.1	CDS	Alide2_1364	NC_015422.1	1430937	1431551	R	PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1054 hypothetical protein; NosL family protein	complement(1430937..1431551)	Alicycliphilus denitrificans K601	10482392
YP_004387283.1	CDS	Alide2_1365	NC_015422.1	1431603	1432139	R	PFAM: Nitrous oxide reductase accessory protein NosL; KEGG: dia:Dtpsy_1055 NosL family protein; NosL family protein	complement(1431603..1432139)	Alicycliphilus denitrificans K601	10482393
YP_004387284.1	CDS	Alide2_1366	NC_015422.1	1432136	1432951	R	KEGG: dia:Dtpsy_1056 ABC-2 type transporter; ABC transporter	complement(1432136..1432951)	Alicycliphilus denitrificans K601	10482394
YP_004387285.1	CDS	Alide2_1367	NC_015422.1	1432967	1433899	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1057 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(1432967..1433899)	Alicycliphilus denitrificans K601	10482395
YP_004387286.1	CDS	Alide2_1368	NC_015422.1	1433874	1435142	R	TIGRFAM: Parallel beta-helix repeat-2; PFAM: Periplasmic copper-binding; Domain of unknown function DUF1565; KEGG: dia:Dtpsy_1058 periplasmic copper-binding; SMART: Carbohydrate-binding/sugar hydrolysis domain; Parallel beta-helix repeat; parallel beta-helix repeat-containing protein	complement(1433874..1435142)	Alicycliphilus denitrificans K601	10482396
YP_004387287.1	CDS	Alide2_1369	NC_015422.1	1435139	1437760	R	KEGG: dia:Dtpsy_1059 FMN-binding domain protein; PFAM: FMN-binding; SMART: FMN-binding; nitrous oxide expression regulator NosR	complement(1435139..1437760)	Alicycliphilus denitrificans K601	10482397
YP_004387288.1	CDS	Alide2_1370	NC_015422.1	1437824	1439758	R	KEGG: ajs:Ajs_1139 nitrous-oxide reductase; PFAM: Cytochrome c oxidase subunit II C-terminal; Nitrous-oxide reductase	complement(1437824..1439758)	Alicycliphilus denitrificans K601	10482398
YP_004387289.1	CDS	Alide2_1371	NC_015422.1	1439780	1440139	R	KEGG: dia:Dtpsy_1061 hypothetical protein; hypothetical protein	complement(1439780..1440139)	Alicycliphilus denitrificans K601	10482399
YP_004387290.1	CDS	Alide2_1372	NC_015422.1	1440367	1440780	D	PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_1062 cytochrome c class I; cytochrome c class I	1440367..1440780	Alicycliphilus denitrificans K601	10482400
YP_004387291.1	CDS	Alide2_1373	NC_015422.1	1440800	1441840	D	PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_1063 ApbE family lipoprotein; ApbE family lipoprotein	1440800..1441840	Alicycliphilus denitrificans K601	10482401
YP_004387292.1	CDS	Alide2_1374	NC_015422.1	1441942	1442787	R	TIGRFAM: Bis(5'-nucleosyl)-tetraphosphatase (symmetrical); KEGG: dia:Dtpsy_1064 diadenosine tetraphosphatase; PFAM: Metallo-dependent phosphatase; bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	complement(1441942..1442787)	Alicycliphilus denitrificans K601	10482402
YP_004387293.1	CDS	Alide2_1375	NC_015422.1	1443102	1443398	D	PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: dia:Dtpsy_1065 histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS	1443102..1443398	Alicycliphilus denitrificans K601	10482403
YP_004387294.1	CDS	Alide2_1376	NC_015422.1	1443671	1446577	D	TIGRFAM: Aconitase/iron regulatory protein 2; KEGG: ajs:Ajs_1145 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; aconitate hydratase 1	1443671..1446577	Alicycliphilus denitrificans K601	10482404
YP_004387295.1	CDS	Alide2_1377	NC_015422.1	1446600	1447820	D	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_1146 monooxygenase, FAD-binding; FAD dependent oxidoreductase	1446600..1447820	Alicycliphilus denitrificans K601	10482405
YP_004387296.1	CDS	Alide2_1378	NC_015422.1	1447872	1449110	R	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1068 major facilitator superfamily MFS_1; major facilitator superfamily protein	complement(1447872..1449110)	Alicycliphilus denitrificans K601	10482406
YP_004387297.1	CDS	Alide2_1379	NC_015422.1	1449136	1450341	R	PFAM: Major facilitator superfamily MFS-1; KEGG: bpe:BP2600 hypothetical protein; major facilitator superfamily protein	complement(1449136..1450341)	Alicycliphilus denitrificans K601	10482407
YP_004387298.1	CDS	Alide2_1380	NC_015422.1	1450518	1451324	R	KEGG: dia:Dtpsy_1069 two component transcriptional regulator, LytTR family; PFAM: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; SMART: LytTr, DNA-binding domain; Signal transduction response regulator, receiver domain; LytTR family two component transcriptional regulator	complement(1450518..1451324)	Alicycliphilus denitrificans K601	10482408
YP_004387299.1	CDS	Alide2_1381	NC_015422.1	1451293	1452348	R	PFAM: Signal transduction histidine kinase, internal region; ATPase-like, ATP-binding domain; KEGG: vei:Veis_2283 signal transduction histidine kinase, LytS; signal transduction histidine kinase, LytS	complement(1451293..1452348)	Alicycliphilus denitrificans K601	10482409
YP_004387300.1	CDS	Alide2_1382	NC_015422.1	1452358	1452729	R	KEGG: vei:Veis_2284 hypothetical protein; hypothetical protein	complement(1452358..1452729)	Alicycliphilus denitrificans K601	10482410
YP_004387301.1	CDS	Alide2_1383	NC_015422.1	1452741	1453292	R	KEGG: xtr:100495621 UPF0065 protein in clcB-clcD intergenic region-like; hypothetical protein	complement(1452741..1453292)	Alicycliphilus denitrificans K601	10482411
YP_004387302.1	CDS	Alide2_1384	NC_015422.1	1453479	1454303	D	TIGRFAM: Bacitracin resistance protein BacA; HAMAP: Bacitracin resistance protein BacA; KEGG: ajs:Ajs_1152 undecaprenyl pyrophosphate phosphatase; PFAM: Bacitracin resistance protein BacA; UDP-diphosphatase	1453479..1454303	Alicycliphilus denitrificans K601	10482412
YP_004387303.1	CDS	Alide2_1385	NC_015422.1	1454319	1455131	R	PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_1074 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein	complement(1454319..1455131)	Alicycliphilus denitrificans K601	10482413
YP_004387304.1	CDS	Alide2_1386	NC_015422.1	1455443	1456867	D	KEGG: dac:Daci_2256 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; Uncharacterised protein domain Spy-rel; RND family efflux transporter MFP subunit	1455443..1456867	Alicycliphilus denitrificans K601	10482414
YP_004387305.1	CDS	Alide2_1387	NC_015422.1	1456904	1460020	D	PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2257 acriflavin resistance protein; acriflavin resistance protein	1456904..1460020	Alicycliphilus denitrificans K601	10482415
YP_004387306.1	CDS	Alide2_1388	NC_015422.1	1460141	1463266	D	PFAM: Acriflavin resistance protein; KEGG: dac:Daci_2258 acriflavin resistance protein; acriflavin resistance protein	1460141..1463266	Alicycliphilus denitrificans K601	10482416
YP_004387307.1	CDS	Alide2_1389	NC_015422.1	1463269	1464681	D	KEGG: dac:Daci_2259 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	1463269..1464681	Alicycliphilus denitrificans K601	10482417
YP_004387308.1	CDS	Alide2_1390	NC_015422.1	1464694	1467306	R	KEGG: dia:Dtpsy_1076 DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; manually curated; TIGRFAM: DNA mismatch repair protein MutS, type 1; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; HAMAP: DNA mismatch repair protein MutS, type 1; DNA mismatch repair protein mutS	complement(1464694..1467306)	Alicycliphilus denitrificans K601	10482418
YP_004387309.1	CDS	Alide2_1391	NC_015422.1	1467629	1468303	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bph:Bphy_3516 TetR family transcriptional regulator; TetR family transcriptional regulator	complement(1467629..1468303)	Alicycliphilus denitrificans K601	10482419
YP_004387310.1	CDS	Alide2_1392	NC_015422.1	1468421	1469257	D	KEGG: bja:bll6360 putative bifunctional enzyme 2-hydroxyhepta-2,4-diene-1,7-dioatesomerase 5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase protein; PFAM: Fumarylacetoacetase, C-terminal-like; Ureidoglycolate lyase	1468421..1469257	Alicycliphilus denitrificans K601	10482420
YP_004387311.1	CDS	Alide2_1395	NC_015422.1	1470832	1471062	D	hypothetical protein	1470832..1471062	Alicycliphilus denitrificans K601	10482423
YP_004387312.1	CDS	Alide2_1396	NC_015422.1	1471098	1472084	R	KEGG: dac:Daci_5118 hypothetical protein; hypothetical protein	complement(1471098..1472084)	Alicycliphilus denitrificans K601	10482424
YP_004387313.1	CDS	Alide2_1397	NC_015422.1	1472123	1473319	R	KEGG: dac:Daci_0789 FMN-dependent alpha-hydroxy acid dehydrogenase; PFAM: FMN-dependent dehydrogenase; L-lactate dehydrogenase (cytochrome)	complement(1472123..1473319)	Alicycliphilus denitrificans K601	10482425
YP_004387314.1	CDS	Alide2_1398	NC_015422.1	1473432	1474346	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_0788 LysR family transcriptional regulator; LysR family transcriptional regulator	1473432..1474346	Alicycliphilus denitrificans K601	10482426
YP_004387315.1	CDS	Alide2_1399	NC_015422.1	1474383	1475963	R	KEGG: dia:Dtpsy_1077 alkaline phosphatase; PFAM: Alkaline phosphatase D-related; alkaline phosphatase	complement(1474383..1475963)	Alicycliphilus denitrificans K601	10482427
YP_004387316.1	CDS	Alide2_1400	NC_015422.1	1475990	1477570	R	SMART: Diguanylate cyclase, predicted; TIGRFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1078 diguanylate cyclase; PFAM: Diguanylate cyclase, predicted; diguanylate cyclase	complement(1475990..1477570)	Alicycliphilus denitrificans K601	10482428
YP_004387317.1	CDS	Alide2_1401	NC_015422.1	1477636	1478457	D	TIGRFAM: Survival protein SurE-like phosphatase/nucleotidase; KEGG: ajs:Ajs_1160 stationary phase survival protein SurE; PFAM: Survival protein SurE-like phosphatase/nucleotidase; stationary-phase survival protein SurE	1477636..1478457	Alicycliphilus denitrificans K601	10482429
YP_004387318.1	CDS	Alide2_1402	NC_015422.1	1478457	1479230	D	TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: dia:Dtpsy_1081 protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase	1478457..1479230	Alicycliphilus denitrificans K601	10482430
YP_004387319.1	CDS	Alide2_1403	NC_015422.1	1479242	1480144	D	KEGG: dia:Dtpsy_1082 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidase M23	1479242..1480144	Alicycliphilus denitrificans K601	10482431
YP_004387320.1	CDS	Alide2_1404	NC_015422.1	1480141	1481151	D	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1083 pseudouridine synthase, RluA family; SMART: RNA-binding S4; RluA family pseudouridine synthase	1480141..1481151	Alicycliphilus denitrificans K601	10482432
YP_004387321.1	CDS	Alide2_1405	NC_015422.1	1481320	1481988	D	KEGG: dia:Dtpsy_1084 chromosome segregation and condensation protein, ScpB; TIGRFAM: Chromosome segregation/condensation protein ScpB, prokaryote; PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; chromosome segregation and condensation protein ScpB	1481320..1481988	Alicycliphilus denitrificans K601	10482433
YP_004387322.1	CDS	Alide2_1406	NC_015422.1	1481990	1483345	D	TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: dia:Dtpsy_1085 pseudouridine synthase; SMART: RNA-binding S4; pseudouridine synthase Rsu	1481990..1483345	Alicycliphilus denitrificans K601	10482434
YP_004387323.1	CDS	Alide2_1407	NC_015422.1	1483424	1483849	D	PFAM: Nucleoside diphosphate kinase; KEGG: ajs:Ajs_1166 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase; nucleoside-diphosphate kinase	1483424..1483849	Alicycliphilus denitrificans K601	10482435
YP_004387324.1	CDS	Alide2_1408	NC_015422.1	1483937	1485061	D	TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: dia:Dtpsy_1087 radical SAM enzyme, Cfr family; PFAM: Radical SAM; ribosomal RNA large subunit methyltransferase N	1483937..1485061	Alicycliphilus denitrificans K601	10482436
YP_004387325.1	CDS	Alide2_1409	NC_015422.1	1485083	1485910	D	KEGG: dia:Dtpsy_1088 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; type IV pilus biogenesis/stability protein PilW	1485083..1485910	Alicycliphilus denitrificans K601	10482437
YP_004387326.1	CDS	Alide2_1410	NC_015422.1	1485903	1486799	D	KEGG: dia:Dtpsy_1089 hypothetical protein; hypothetical protein	1485903..1486799	Alicycliphilus denitrificans K601	10482438
YP_004387327.1	CDS	Alide2_1411	NC_015422.1	1486800	1488074	D	KEGG: dia:Dtpsy_1090 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	1486800..1488074	Alicycliphilus denitrificans K601	10482439
YP_004387328.1	CDS	Alide2_1412	NC_015422.1	1488158	1489447	D	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Anticodon-binding; TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: dia:Dtpsy_1091 histidyl-tRNA synthetase; histidyl-tRNA synthetase	1488158..1489447	Alicycliphilus denitrificans K601	10482440
YP_004387329.1	CDS	Alide2_1413	NC_015422.1	1489463	1490143	D	PFAM: Protein of unknown function DUF2133; KEGG: dia:Dtpsy_1092 hypothetical protein; hypothetical protein	1489463..1490143	Alicycliphilus denitrificans K601	10482441
YP_004387330.1	CDS	Alide2_1414	NC_015422.1	1490140	1491288	D	KEGG: dia:Dtpsy_1093 outer membrane assembly lipoprotein YfgL; TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; outer membrane assembly lipoprotein YfgL	1490140..1491288	Alicycliphilus denitrificans K601	10482442
YP_004387331.1	CDS	Alide2_1415	NC_015422.1	1491307	1492650	D	KEGG: dia:Dtpsy_1094 GTP-binding protein EngA; TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; ribosome-associated GTPase EngA	1491307..1492650	Alicycliphilus denitrificans K601	10482443
YP_004387332.1	CDS	Alide2_1416	NC_015422.1	1492674	1492976	D	KEGG: dia:Dtpsy_1095 RNA chaperone Hfq; TIGRFAM: Host factor Hfq; PFAM: Like-Sm ribonucleoprotein (LSM) domain; RNA chaperone Hfq	1492674..1492976	Alicycliphilus denitrificans K601	10482444
YP_004387333.1	CDS	Alide2_1417	NC_015422.1	1493041	1494219	D	KEGG: ajs:Ajs_1176 small GTP-binding protein; TIGRFAM: GTP-binding protein, HflX; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX	1493041..1494219	Alicycliphilus denitrificans K601	10482445
YP_004387334.1	CDS	Alide2_1418	NC_015422.1	1494272	1495648	D	TIGRFAM: HflK; PFAM: Band 7 protein; Protein HflK, N-terminal; KEGG: dia:Dtpsy_1097 HflK protein; SMART: Band 7 protein; HflK protein	1494272..1495648	Alicycliphilus denitrificans K601	10482446
YP_004387335.1	CDS	Alide2_1419	NC_015422.1	1495658	1496572	D	TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: ajs:Ajs_1178 HflC protein; SMART: Band 7 protein; HflC protein	1495658..1496572	Alicycliphilus denitrificans K601	10482447
YP_004387336.1	CDS	Alide2_1420	NC_015422.1	1496601	1496789	D	PFAM: Protein of unknown function DUF2065; KEGG: ajs:Ajs_1179 hypothetical protein; hypothetical protein	1496601..1496789	Alicycliphilus denitrificans K601	10482448
YP_004387337.1	CDS	Alide2_1421	NC_015422.1	1496864	1498012	D	TIGRFAM: Histidyl-tRNA synthetase, class IIa, putative; KEGG: ajs:Ajs_1180 tRNA synthetase, class II (G, H, P and S); histidyl-tRNA synthetase 2	1496864..1498012	Alicycliphilus denitrificans K601	10482449
YP_004387338.1	CDS	Alide2_1422	NC_015422.1	1498040	1499416	D	SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: dia:Dtpsy_1101 adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; adenylosuccinate synthetase	1498040..1499416	Alicycliphilus denitrificans K601	10482450
YP_004387339.1	CDS	Alide2_1423	NC_015422.1	1499488	1500012	D	PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_1182 phosphoribosyltransferase; phosphoribosyltransferase	1499488..1500012	Alicycliphilus denitrificans K601	10482451
YP_004387340.1	CDS	Alide2_1424	NC_015422.1	1505864	1506601	D	KEGG: ajs:Ajs_1183 ribosomal small subunit pseudouridine synthase A; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase Rsu	1505864..1506601	Alicycliphilus denitrificans K601	10482457
YP_004387341.1	CDS	Alide2_1425	NC_015422.1	1506709	1507674	D	KEGG: dia:Dtpsy_1104 hypothetical protein; hypothetical protein	1506709..1507674	Alicycliphilus denitrificans K601	10482458
YP_004387342.1	CDS	Alide2_1426	NC_015422.1	1507688	1508491	D	KEGG: dia:Dtpsy_1105 polysaccharide deacetylase; manually curated; PFAM: Polysaccharide deacetylase; polysaccharide deacetylase	1507688..1508491	Alicycliphilus denitrificans K601	10482459
YP_004387343.1	CDS	Alide2_1427	NC_015422.1	1508533	1509531	D	PFAM: Fatty acid hydroxylase; KEGG: dia:Dtpsy_1106 fatty acid hydroxylase; fatty acid hydroxylase	1508533..1509531	Alicycliphilus denitrificans K601	10482460
YP_004387344.1	CDS	Alide2_1428	NC_015422.1	1509559	1510452	D	PFAM: Uncharacterised protein family CysZ; KEGG: dia:Dtpsy_1107 putative transmembrane protein; hypothetical protein	1509559..1510452	Alicycliphilus denitrificans K601	10482461
YP_004387345.1	CDS	Alide2_1429	NC_015422.1	1510449	1511270	D	KEGG: ajs:Ajs_1188 molybdopterin binding domain-containing protein; PFAM: Molybdopterin binding; SMART: Molybdopterin binding; molybdopterin binding domain-containing protein	1510449..1511270	Alicycliphilus denitrificans K601	10482462
YP_004387346.1	CDS	Alide2_1430	NC_015422.1	1511442	1512857	D	TIGRFAM: Glutamine synthetase type I; KEGG: aav:Aave_1442 L-glutamine synthetase; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp; glutamine synthetase, type I	1511442..1512857	Alicycliphilus denitrificans K601	10482463
YP_004387347.1	CDS	Alide2_1431	NC_015422.1	1513031	1513519	D	KEGG: dia:Dtpsy_1110 putative signal peptide protein; hypothetical protein	1513031..1513519	Alicycliphilus denitrificans K601	10482464
YP_004387348.1	CDS	Alide2_1432	NC_015422.1	1513544	1514614	D	manually curated; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1111 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; signal transduction histidine kinase, nitrogen specific, NtrB	1513544..1514614	Alicycliphilus denitrificans K601	10482465
YP_004387349.1	CDS	Alide2_1433	NC_015422.1	1514656	1516095	D	TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_1112 nitrogen metabolism transcriptional regulator, NtrC, fis family; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family nitrogen metabolism transcriptional regulator NtrC	1514656..1516095	Alicycliphilus denitrificans K601	10482466
YP_004387350.1	CDS	Alide2_1434	NC_015422.1	1516420	1517196	R	TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: dia:Dtpsy_1114 exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth	complement(1516420..1517196)	Alicycliphilus denitrificans K601	10482467
YP_004387351.1	CDS	Alide2_1435	NC_015422.1	1517203	1517493	R	KEGG: shn:Shewana3_1258 XRE family transcriptional regulator; hypothetical protein	complement(1517203..1517493)	Alicycliphilus denitrificans K601	10482468
YP_004387352.1	CDS	Alide2_1436	NC_015422.1	1517706	1519406	D	TIGRFAM: ATPase, K+ transporting, A subunit; KEGG: pap:PSPA7_3712 potassium-transporting ATPase subunit A; PFAM: ATPase, K+ transporting, A subunit; potassium-transporting ATPase subunit A	1517706..1519406	Alicycliphilus denitrificans K601	10482469
YP_004387353.1	CDS	Alide2_1437	NC_015422.1	1519418	1521442	D	PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: tgr:Tgr7_1888 potassium-transporting ATPase subunit B; potassium-transporting ATPase subunit B	1519418..1521442	Alicycliphilus denitrificans K601	10482470
YP_004387354.1	CDS	Alide2_1438	NC_015422.1	1521456	1522088	D	TIGRFAM: Potassium transporting ATPase, C subunit; KEGG: pap:PSPA7_3714 K+-transporting ATPase subunit C; PFAM: Potassium transporting ATPase, C subunit; potassium-transporting ATPase subunit C	1521456..1522088	Alicycliphilus denitrificans K601	10482471
YP_004387355.1	CDS	Alide2_1439	NC_015422.1	1522104	1524833	D	KEGG: tgr:Tgr7_1885 sensor protein KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; ATPase-like, ATP-binding domain; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; Osmosensitive K channel His kinase sensor	1522104..1524833	Alicycliphilus denitrificans K601	10482472
YP_004387356.1	CDS	Alide2_1440	NC_015422.1	1524838	1525548	D	KEGG: tgr:Tgr7_1884 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	1524838..1525548	Alicycliphilus denitrificans K601	10482473
YP_004387357.1	CDS	Alide2_1441	NC_015422.1	1525625	1526002	D	KEGG: rle:pRL110581 putative transposase-related protein; putative transposase-like protein	1525625..1526002	Alicycliphilus denitrificans K601	10482474
YP_004387358.1	CDS	Alide2_1442	NC_015422.1	1525999	1526385	D	PFAM: Transposase, IS4-like; KEGG: nwi:Nwi_1015 transposase, IS4; transposase IS4 family protein	1525999..1526385	Alicycliphilus denitrificans K601	10482475
YP_004387359.1	CDS	Alide2_1443	NC_015422.1	1526573	1527244	D	PFAM: Protein of unknown function DUF3348; KEGG: vap:Vapar_3241 hypothetical protein; hypothetical protein	1526573..1527244	Alicycliphilus denitrificans K601	10482476
YP_004387360.1	CDS	Alide2_1444	NC_015422.1	1527241	1529979	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Domain of unknown function DUF802; KEGG: vap:Vapar_3240 protein of unknown function DUF802; OmpA/MotB domain-containing protein	1527241..1529979	Alicycliphilus denitrificans K601	10482477
YP_004387361.1	CDS	Alide2_1446	NC_015422.1	1530511	1531005	R	KEGG: dia:Dtpsy_1115 dihydrofolate reductase; PFAM: Dihydrofolate reductase domain; dihydrofolate reductase	complement(1530511..1531005)	Alicycliphilus denitrificans K601	10482479
YP_004387362.1	CDS	Alide2_1447	NC_015422.1	1531002	1531817	R	TIGRFAM: Thymidylate synthase; KEGG: ajs:Ajs_1197 thymidylate synthase; PFAM: Thymidylate synthase; thymidylate synthase	complement(1531002..1531817)	Alicycliphilus denitrificans K601	10482480
YP_004387363.1	CDS	Alide2_1448	NC_015422.1	1531870	1533294	R	KEGG: dia:Dtpsy_1117 FAD linked oxidase domain protein; PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; D-lactate dehydrogenase (cytochrome)	complement(1531870..1533294)	Alicycliphilus denitrificans K601	10482481
YP_004387364.1	CDS	Alide2_1449	NC_015422.1	1533291	1533719	R	PFAM: Protein of unknown function DUF2069, membrane; KEGG: dia:Dtpsy_1118 membrane protein-like protein; hypothetical protein	complement(1533291..1533719)	Alicycliphilus denitrificans K601	10482482
YP_004387365.1	CDS	Alide2_1450	NC_015422.1	1533741	1534994	D	KEGG: dia:Dtpsy_1119 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; ribonuclease BN	1533741..1534994	Alicycliphilus denitrificans K601	10482483
YP_004387366.1	CDS	Alide2_1451	NC_015422.1	1535196	1537220	R	PFAM: Protein of unknown function DUF2868; Protein of unknown function DUF3482; KEGG: pna:Pnap_2063 hypothetical protein; hypothetical protein	complement(1535196..1537220)	Alicycliphilus denitrificans K601	10482484
YP_004387367.1	CDS	Alide2_1452	NC_015422.1	1537234	1538526	R	KEGG: ajs:Ajs_1201 amine oxidase; TIGRFAM: Squalene-associated FAD-dependent desaturase; PFAM: Amine oxidase; squalene-associated FAD-dependent desaturase	complement(1537234..1538526)	Alicycliphilus denitrificans K601	10482485
YP_004387368.1	CDS	Alide2_1453	NC_015422.1	1538709	1540343	D	KEGG: rfr:Rfer_3023 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	1538709..1540343	Alicycliphilus denitrificans K601	10482486
YP_004387369.1	CDS	Alide2_1454	NC_015422.1	1540375	1541214	R	TIGRFAM: Squalene/phytoene synthase HpnD; KEGG: dia:Dtpsy_1121 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD	complement(1540375..1541214)	Alicycliphilus denitrificans K601	10482487
YP_004387370.1	CDS	Alide2_1455	NC_015422.1	1541328	1542206	R	KEGG: dia:Dtpsy_1124 squalene synthase HpnC; TIGRFAM: Squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase HpnC	complement(1541328..1542206)	Alicycliphilus denitrificans K601	10482488
YP_004387371.1	CDS	Alide2_1456	NC_015422.1	1542299	1543570	D	KEGG: dia:Dtpsy_1125 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	1542299..1543570	Alicycliphilus denitrificans K601	10482489
YP_004387372.1	CDS	Alide2_1457	NC_015422.1	1543580	1546699	D	PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_1207 acriflavin resistance protein; acriflavin resistance protein	1543580..1546699	Alicycliphilus denitrificans K601	10482490
YP_004387373.1	CDS	Alide2_1458	NC_015422.1	1546924	1548234	D	TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: dia:Dtpsy_1127 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial; Trigger factor	1546924..1548234	Alicycliphilus denitrificans K601	10482492
YP_004387374.1	CDS	Alide2_1459	NC_015422.1	1548359	1548967	D	TIGRFAM: Peptidase S14, ClpP; KEGG: dia:Dtpsy_1128 ATP-dependent Clp protease proteolytic subunit; PFAM: Peptidase S14, ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP	1548359..1548967	Alicycliphilus denitrificans K601	10482493
YP_004387375.1	CDS	Alide2_1460	NC_015422.1	1549067	1550332	D	TIGRFAM: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase, AAA-2; Clp ATPase, C-terminal; Zinc finger, C4-type; KEGG: dia:Dtpsy_1129 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease, ATP-binding subunit ClpX	1549067..1550332	Alicycliphilus denitrificans K601	10482494
YP_004387376.1	CDS	Alide2_1461	NC_015422.1	1550471	1552891	D	SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; TIGRFAM: Peptidase S16, ATP-dependent protease La; KEGG: dia:Dtpsy_1130 ATP-dependent protease La; PFAM: Peptidase S16, Lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; anti-sigma H sporulation factor, LonB	1550471..1552891	Alicycliphilus denitrificans K601	10482495
YP_004387377.1	CDS	Alide2_1462	NC_015422.1	1553362	1553979	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_4464 TetR family transcriptional regulator; TetR family transcriptional regulator	1553362..1553979	Alicycliphilus denitrificans K601	10482498
YP_004387378.1	CDS	Alide2_1463	NC_015422.1	1554184	1555068	D	KEGG: bbr:BB0589 hypothetical protein; PFAM: Aldehyde-lyase domain; Citryl-CoA lyase	1554184..1555068	Alicycliphilus denitrificans K601	10482499
YP_004387379.1	CDS	Alide2_1464	NC_015422.1	1555096	1555557	D	PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7289 MaoC-like dehydratase; MaoC domain-containing protein dehydratase	1555096..1555557	Alicycliphilus denitrificans K601	10482500
YP_004387380.1	CDS	Alide2_1465	NC_015422.1	1555569	1556735	D	KEGG: bur:Bcep18194_C7290 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	1555569..1556735	Alicycliphilus denitrificans K601	10482501
YP_004387381.1	CDS	Alide2_1466	NC_015422.1	1556812	1558056	D	KEGG: bur:Bcep18194_B2644 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1556812..1558056	Alicycliphilus denitrificans K601	10482502
YP_004387382.1	CDS	Alide2_1467	NC_015422.1	1558058	1559218	D	KEGG: bbr:BB0593 CaiB/BaiF family protein; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase	1558058..1559218	Alicycliphilus denitrificans K601	10482503
YP_004387383.1	CDS	Alide2_1468	NC_015422.1	1559231	1560196	D	KEGG: bbr:BB0594 hypothetical protein; hypothetical protein	1559231..1560196	Alicycliphilus denitrificans K601	10482504
YP_004387384.1	CDS	Alide2_1469	NC_015422.1	1560193	1560615	D	KEGG: bbr:BB0595 hypothetical protein; hypothetical protein	1560193..1560615	Alicycliphilus denitrificans K601	10482505
YP_004387385.1	CDS	Alide2_1470	NC_015422.1	1560619	1561302	D	PFAM: Nitroreductase-like; KEGG: bbr:BB0596 nitroreductase family protein; nitroreductase	1560619..1561302	Alicycliphilus denitrificans K601	10482506
YP_004387386.1	CDS	Alide2_1471	NC_015422.1	1561307	1562077	D	PFAM: Crotonase, core; KEGG: bbr:BB0597 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase	1561307..1562077	Alicycliphilus denitrificans K601	10482507
YP_004387387.1	CDS	Alide2_1472	NC_015422.1	1562272	1563444	D	PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0598 extracellular ligand binding protein; extracellular ligand-binding receptor	1562272..1563444	Alicycliphilus denitrificans K601	10482508
YP_004387388.1	CDS	Alide2_1473	NC_015422.1	1563454	1564329	D	PFAM: ABC transporter permease; KEGG: bbr:BB0599 putative branched-chain amino acid transport system permease protein; ABC transporter permease	1563454..1564329	Alicycliphilus denitrificans K601	10482509
YP_004387389.1	CDS	Alide2_1474	NC_015422.1	1564322	1565239	D	PFAM: ABC transporter permease; KEGG: bbr:BB0600 putative branched-chain amino acid transport system permease protein; ABC transporter permease	1564322..1565239	Alicycliphilus denitrificans K601	10482510
YP_004387390.1	CDS	Alide2_1475	NC_015422.1	1565242	1565991	D	PFAM: ABC transporter-like; KEGG: bbr:BB0601 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	1565242..1565991	Alicycliphilus denitrificans K601	10482511
YP_004387391.1	CDS	Alide2_1476	NC_015422.1	1565981	1566700	D	PFAM: ABC transporter-like; KEGG: bbr:BB0602 ABC transport system ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	1565981..1566700	Alicycliphilus denitrificans K601	10482512
YP_004387392.1	CDS	Alide2_1477	NC_015422.1	1566715	1568685	R	KEGG: bbr:BB0603 NADH:flavin oxidoreductase / NADH oxidase family protein; PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; Alanine dehydrogenase/PNT, C-terminal; Trimethylamine dehydrogenase	complement(1566715..1568685)	Alicycliphilus denitrificans K601	10482513
YP_004387393.1	CDS	Alide2_1478	NC_015422.1	1568682	1569464	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0604 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR	complement(1568682..1569464)	Alicycliphilus denitrificans K601	10482514
YP_004387394.1	CDS	Alide2_1479	NC_015422.1	1569629	1571050	R	PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_B2639 hypothetical protein; MmgE/PrpD family protein	complement(1569629..1571050)	Alicycliphilus denitrificans K601	10482515
YP_004387395.1	CDS	Alide2_1480	NC_015422.1	1571140	1572096	D	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B2640 LysR family transcriptional regulator; LysR family transcriptional regulator	1571140..1572096	Alicycliphilus denitrificans K601	10482516
YP_004387396.1	CDS	Alide2_1481	NC_015422.1	1572263	1573231	D	KEGG: bbr:BB0605 hypothetical protein; hypothetical protein	1572263..1573231	Alicycliphilus denitrificans K601	10482517
YP_004387397.1	CDS	Alide2_1483	NC_015422.1	1573392	1574549	R	KEGG: bur:Bcep18194_C7493 alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase	complement(1573392..1574549)	Alicycliphilus denitrificans K601	10482519
YP_004387398.1	CDS	Alide2_1484	NC_015422.1	1574595	1575071	R	hypothetical protein	complement(1574595..1575071)	Alicycliphilus denitrificans K601	10482520
YP_004387399.1	CDS	Alide2_1485	NC_015422.1	1575398	1575556	R	hypothetical protein	complement(1575398..1575556)	Alicycliphilus denitrificans K601	10482521
YP_004387400.1	CDS	Alide2_1486	NC_015422.1	1575581	1576738	R	KEGG: reu:Reut_A1830 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(1575581..1576738)	Alicycliphilus denitrificans K601	10482522
YP_004387401.1	CDS	Alide2_1487	NC_015422.1	1576786	1578018	R	KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(1576786..1578018)	Alicycliphilus denitrificans K601	10482523
YP_004387402.1	CDS	Alide2_1488	NC_015422.1	1578024	1579031	R	KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein	complement(1578024..1579031)	Alicycliphilus denitrificans K601	10482524
YP_004387403.1	CDS	Alide2_1489	NC_015422.1	1579149	1580330	R	KEGG: eba:ebA306 lipid-transfer protein; PFAM: Beta-ketoacyl synthase, C-terminal; Propanoyl-CoA C-acyltransferase	complement(1579149..1580330)	Alicycliphilus denitrificans K601	10482525
YP_004387404.1	CDS	Alide2_1490	NC_015422.1	1580343	1580684	R	KEGG: bbt:BBta_2933 hypothetical protein; hypothetical protein	complement(1580343..1580684)	Alicycliphilus denitrificans K601	10482526
YP_004387405.1	CDS	Alide2_1491	NC_015422.1	1580686	1582044	R	PFAM: Protein of unknown function DUF1446; KEGG: sth:STH1574 hypothetical protein; hypothetical protein	complement(1580686..1582044)	Alicycliphilus denitrificans K601	10482527
YP_004387406.1	CDS	Alide2_1492	NC_015422.1	1582050	1582550	R	PFAM: MaoC-like dehydratase; KEGG: reu:Reut_A1834 MaoC-like dehydratase; MaoC domain-containing protein dehydratase	complement(1582050..1582550)	Alicycliphilus denitrificans K601	10482528
YP_004387407.1	CDS	Alide2_1493	NC_015422.1	1582565	1583707	R	KEGG: reu:Reut_A1835 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(1582565..1583707)	Alicycliphilus denitrificans K601	10482529
YP_004387408.1	CDS	Alide2_1494	NC_015422.1	1583853	1583966	R	hypothetical protein	complement(1583853..1583966)	Alicycliphilus denitrificans K601	10482530
YP_004387409.1	CDS	Alide2_1495	NC_015422.1	1584236	1585042	D	KEGG: bur:Bcep18194_C7276 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	1584236..1585042	Alicycliphilus denitrificans K601	10482531
YP_004387410.1	CDS	Alide2_1496	NC_015422.1	1585084	1585899	D	PFAM: Crotonase, core; KEGG: pol:Bpro_5272 short chain enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	1585084..1585899	Alicycliphilus denitrificans K601	10482532
YP_004387411.1	CDS	Alide2_1497	NC_015422.1	1585961	1586974	D	KEGG: reu:Reut_A1831 hypothetical protein; hypothetical protein	1585961..1586974	Alicycliphilus denitrificans K601	10482533
YP_004387412.1	CDS	Alide2_1498	NC_015422.1	1586980	1588197	D	KEGG: bur:Bcep18194_C7488 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1586980..1588197	Alicycliphilus denitrificans K601	10482534
YP_004387413.1	CDS	Alide2_1499	NC_015422.1	1588198	1589127	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7486 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1588198..1589127)	Alicycliphilus denitrificans K601	10482535
YP_004387414.1	CDS	Alide2_1501	NC_015422.1	1590659	1592278	R	KEGG: bur:Bcep18194_C7484 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; Choline dehydrogenase	complement(1590659..1592278)	Alicycliphilus denitrificans K601	10482537
YP_004387415.1	CDS	Alide2_1502	NC_015422.1	1592518	1593465	D	KEGG: vei:Veis_2943 hypothetical protein; hypothetical protein	1592518..1593465	Alicycliphilus denitrificans K601	10482538
YP_004387416.1	CDS	Alide2_1503	NC_015422.1	1593538	1594158	D	KEGG: bur:Bcep18194_C6760 hypothetical protein; hypothetical protein	1593538..1594158	Alicycliphilus denitrificans K601	10482539
YP_004387417.1	CDS	Alide2_1504	NC_015422.1	1594155	1595594	D	PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C6759 MmgE/PrpD; MmgE/PrpD family protein	1594155..1595594	Alicycliphilus denitrificans K601	10482540
YP_004387418.1	CDS	Alide2_1505	NC_015422.1	1595639	1596433	R	KEGG: bbr:BB0608 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1595639..1596433)	Alicycliphilus denitrificans K601	10482541
YP_004387419.1	CDS	Alide2_1506	NC_015422.1	1596430	1597263	R	KEGG: bpa:BPP0603 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1596430..1597263)	Alicycliphilus denitrificans K601	10482542
YP_004387420.1	CDS	Alide2_1507	NC_015422.1	1597376	1598245	D	PFAM: Alpha/beta hydrolase fold-1; KEGG: bxe:Bxe_A2766 non-heme peroxidase; alpha/beta hydrolase fold protein	1597376..1598245	Alicycliphilus denitrificans K601	10482543
YP_004387421.1	CDS	Alide2_1508	NC_015422.1	1598285	1599436	R	KEGG: bbr:BB0611 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	complement(1598285..1599436)	Alicycliphilus denitrificans K601	10482544
YP_004387422.1	CDS	Alide2_1509	NC_015422.1	1599672	1600547	D	KEGG: bpa:BPP0606 putative enoyl-CoA hydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	1599672..1600547	Alicycliphilus denitrificans K601	10482545
YP_004387423.1	CDS	Alide2_1510	NC_015422.1	1600578	1601327	D	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB0613 putative short chain dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase	1600578..1601327	Alicycliphilus denitrificans K601	10482546
YP_004387424.1	CDS	Alide2_1511	NC_015422.1	1601408	1602613	D	TIGRFAM: Thiolase; KEGG: bur:Bcep18194_C7332 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	1601408..1602613	Alicycliphilus denitrificans K601	10482547
YP_004387425.1	CDS	Alide2_1512	NC_015422.1	1602627	1604564	D	KEGG: bbr:BB0615 AMP-binding enzyme; PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase	1602627..1604564	Alicycliphilus denitrificans K601	10482548
YP_004387426.1	CDS	Alide2_1513	NC_015422.1	1604570	1605418	D	KEGG: bpa:BPP0610 IclR family regulatory protein; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	1604570..1605418	Alicycliphilus denitrificans K601	10482549
YP_004387427.1	CDS	Alide2_1514	NC_015422.1	1605459	1606640	D	KEGG: bbr:BB0617 CaiB/BaiF family protein; PFAM: CoA-transferase family III; formyl-CoA transferase	1605459..1606640	Alicycliphilus denitrificans K601	10482550
YP_004387428.1	CDS	Alide2_1515	NC_015422.1	1606652	1608082	D	PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; MmgE/PrpD family protein	1606652..1608082	Alicycliphilus denitrificans K601	10482551
YP_004387429.1	CDS	Alide2_1516	NC_015422.1	1608079	1609008	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bur:Bcep18194_C7296 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1608079..1609008)	Alicycliphilus denitrificans K601	10482552
YP_004387430.1	CDS	Alide2_1517	NC_015422.1	1609118	1610284	D	KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	1609118..1610284	Alicycliphilus denitrificans K601	10482553
YP_004387431.1	CDS	Alide2_1518	NC_015422.1	1610307	1611056	D	KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta	1610307..1611056	Alicycliphilus denitrificans K601	10482554
YP_004387432.1	CDS	Alide2_1519	NC_015422.1	1611057	1612001	D	KEGG: rpi:Rpic_2640 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein subunit alpha	1611057..1612001	Alicycliphilus denitrificans K601	10482555
YP_004387433.1	CDS	Alide2_1520	NC_015422.1	1612090	1612938	D	KEGG: bbr:BB0622 hypothetical protein; hypothetical protein	1612090..1612938	Alicycliphilus denitrificans K601	10482556
YP_004387434.1	CDS	Alide2_1521	NC_015422.1	1612951	1614150	D	KEGG: bur:Bcep18194_C7301 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1612951..1614150	Alicycliphilus denitrificans K601	10482557
YP_004387435.1	CDS	Alide2_1522	NC_015422.1	1614153	1614998	D	PFAM: Aldehyde-lyase domain; KEGG: bur:Bcep18194_C7302 HpcH/HpaI aldolase; HpcH/HpaI aldolase	1614153..1614998	Alicycliphilus denitrificans K601	10482558
YP_004387436.1	CDS	Alide2_1524	NC_015422.1	1616889	1617635	R	KEGG: jan:Jann_2264 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(1616889..1617635)	Alicycliphilus denitrificans K601	10482560
YP_004387437.1	CDS	Alide2_1525	NC_015422.1	1617800	1618564	R	PFAM: ABC transporter-like; KEGG: jan:Jann_2265 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(1617800..1618564)	Alicycliphilus denitrificans K601	10482561
YP_004387438.1	CDS	Alide2_1526	NC_015422.1	1618561	1619454	R	PFAM: ABC transporter permease; KEGG: jan:Jann_2266 inner-membrane translocator; ABC transporter permease	complement(1618561..1619454)	Alicycliphilus denitrificans K601	10482562
YP_004387439.1	CDS	Alide2_1527	NC_015422.1	1619459	1620352	R	PFAM: ABC transporter permease; KEGG: jan:Jann_2267 inner-membrane translocator; ABC transporter permease	complement(1619459..1620352)	Alicycliphilus denitrificans K601	10482563
YP_004387440.1	CDS	Alide2_1528	NC_015422.1	1620431	1621564	R	PFAM: Extracellular ligand-binding receptor; KEGG: jan:Jann_2263 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(1620431..1621564)	Alicycliphilus denitrificans K601	10482564
YP_004387441.1	CDS	Alide2_1529	NC_015422.1	1621651	1622721	R	KEGG: bur:Bcep18194_C7304 zinc-containing alcohol dehydrogenase superfamily protein; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; L-iditol 2-dehydrogenase	complement(1621651..1622721)	Alicycliphilus denitrificans K601	10482565
YP_004387442.1	CDS	Alide2_1530	NC_015422.1	1622739	1624226	R	PFAM: Aldehyde dehydrogenase domain; KEGG: bur:Bcep18194_C6756 aldehyde dehydrogenase (acceptor); aldehyde dehydrogenase	complement(1622739..1624226)	Alicycliphilus denitrificans K601	10482566
YP_004387443.1	CDS	Alide2_1531	NC_015422.1	1624234	1624443	R	hypothetical protein	complement(1624234..1624443)	Alicycliphilus denitrificans K601	10482567
YP_004387444.1	CDS	Alide2_1532	NC_015422.1	1624626	1625597	R	KEGG: bbr:BB0625 hypothetical protein; hypothetical protein	complement(1624626..1625597)	Alicycliphilus denitrificans K601	10482568
YP_004387445.1	CDS	Alide2_1533	NC_015422.1	1625621	1627027	R	PFAM: MmgE/PrpD; KEGG: bpa:BPP0622 hypothetical protein; MmgE/PrpD family protein	complement(1625621..1627027)	Alicycliphilus denitrificans K601	10482569
YP_004387446.1	CDS	Alide2_1534	NC_015422.1	1627098	1628576	R	KEGG: bur:Bcep18194_C7305 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain; betaine-aldehyde dehydrogenase	complement(1627098..1628576)	Alicycliphilus denitrificans K601	10482570
YP_004387447.1	CDS	Alide2_1535	NC_015422.1	1628665	1630158	R	KEGG: bur:Bcep18194_C7306 aldehyde dehydrogenase (acceptor); PFAM: Aldehyde dehydrogenase domain; betaine-aldehyde dehydrogenase	complement(1628665..1630158)	Alicycliphilus denitrificans K601	10482571
YP_004387448.1	CDS	Alide2_1536	NC_015422.1	1630254	1631063	R	PFAM: Crotonase, core; KEGG: bbr:BB0629 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(1630254..1631063)	Alicycliphilus denitrificans K601	10482572
YP_004387449.1	CDS	Alide2_1537	NC_015422.1	1631170	1631655	R	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: aav:Aave_4649 protein of unknown function DUF894, DitE; hypothetical protein	complement(1631170..1631655)	Alicycliphilus denitrificans K601	10482573
YP_004387450.1	CDS	Alide2_1538	NC_015422.1	1631697	1632752	R	PFAM: Porin, Gram-negative type; KEGG: bcm:Bcenmc03_6621 porin; porin	complement(1631697..1632752)	Alicycliphilus denitrificans K601	10482574
YP_004387451.1	CDS	Alide2_1539	NC_015422.1	1632817	1633785	R	KEGG: reu:Reut_B3884 hypothetical protein; hypothetical protein	complement(1632817..1633785)	Alicycliphilus denitrificans K601	10482575
YP_004387452.1	CDS	Alide2_1540	NC_015422.1	1634384	1635247	D	PFAM: ABC transporter permease; KEGG: dac:Daci_0260 inner-membrane translocator; ABC transporter permease	1634384..1635247	Alicycliphilus denitrificans K601	10482576
YP_004387453.1	CDS	Alide2_1541	NC_015422.1	1635248	1636222	D	PFAM: ABC transporter permease; KEGG: dac:Daci_0261 inner-membrane translocator; ABC transporter permease	1635248..1636222	Alicycliphilus denitrificans K601	10482577
YP_004387454.1	CDS	Alide2_1542	NC_015422.1	1636209	1636973	D	PFAM: ABC transporter-like; KEGG: dac:Daci_0262 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	1636209..1636973	Alicycliphilus denitrificans K601	10482578
YP_004387455.1	CDS	Alide2_1543	NC_015422.1	1636960	1637667	D	PFAM: ABC transporter-like; KEGG: dac:Daci_0263 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	1636960..1637667	Alicycliphilus denitrificans K601	10482579
YP_004387456.1	CDS	Alide2_1544	NC_015422.1	1637712	1638878	D	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0264 extracellular ligand-binding receptor; extracellular ligand-binding receptor	1637712..1638878	Alicycliphilus denitrificans K601	10482580
YP_004387457.1	CDS	Alide2_1545	NC_015422.1	1639019	1640719	R	KEGG: tin:Tint_1587 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(1639019..1640719)	Alicycliphilus denitrificans K601	10482581
YP_004387458.1	CDS	Alide2_1546	NC_015422.1	1640729	1641955	R	KEGG: tin:Tint_1589 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	complement(1640729..1641955)	Alicycliphilus denitrificans K601	10482582
YP_004387459.1	CDS	Alide2_1547	NC_015422.1	1641978	1642751	R	KEGG: dac:Daci_0266 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(1641978..1642751)	Alicycliphilus denitrificans K601	10482583
YP_004387460.1	CDS	Alide2_1548	NC_015422.1	1643004	1643801	R	KEGG: reh:H16_A2948 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1643004..1643801)	Alicycliphilus denitrificans K601	10482584
YP_004387461.1	CDS	Alide2_1549	NC_015422.1	1643883	1644155	D	PFAM: Histone-like nucleoid-structuring protein H-NS; KEGG: ctt:CtCNB1_0646 histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS	1643883..1644155	Alicycliphilus denitrificans K601	10482585
YP_004387462.1	CDS	Alide2_1550	NC_015422.1	1644171	1645400	R	PFAM: Major facilitator superfamily MFS-1; KEGG: azo:azo3693 hypothetical protein; major facilitator superfamily protein	complement(1644171..1645400)	Alicycliphilus denitrificans K601	10482586
YP_004387463.1	CDS	Alide2_1551	NC_015422.1	1646379	1647326	R	PFAM: Integrase, catalytic core; KEGG: pol:Bpro_0754 integrase catalytic subunit; integrase catalytic subunit	complement(1646379..1647326)	Alicycliphilus denitrificans K601	10482588
YP_004387464.1	CDS	Alide2_1552	NC_015422.1	1647481	1649358	R	manually curated; KEGG: bxe:Bxe_A1801 hypothetical protein; hypothetical protein	complement(1647481..1649358)	Alicycliphilus denitrificans K601	10482589
YP_004387465.1	CDS	Alide2_1554	NC_015422.1	1651396	1651719	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	1651396..1651719	Alicycliphilus denitrificans K601	10482590
YP_004387466.1	CDS	Alide2_1556	NC_015422.1	1653251	1654213	R	PFAM: Transposase, IS4-like; KEGG: bmj:BMULJ_05861 ISBmu20 transposase; transposase IS4 family protein	complement(1653251..1654213)	Alicycliphilus denitrificans K601	10482592
YP_004387467.1	CDS	Alide2_1557	NC_015422.1	1654411	1655379	R	PFAM: Transposase, IS4-like; KEGG: axy:AXYL_01136 transposase, IS4 family protein 1; transposase IS4 family protein	complement(1654411..1655379)	Alicycliphilus denitrificans K601	10482593
YP_004387468.1	CDS	Alide2_1559	NC_015422.1	1655594	1655929	D	hypothetical protein	1655594..1655929	Alicycliphilus denitrificans K601	10482595
YP_004387469.1	CDS	Alide2_1560	NC_015422.1	1655898	1656842	R	PFAM: Integrase, catalytic core; KEGG: xop:PXO_02075 IS1112 transposase; integrase catalytic subunit	complement(1655898..1656842)	Alicycliphilus denitrificans K601	10482596
YP_004387470.1	CDS	Alide2_1562	NC_015422.1	1657385	1657603	R	PFAM: Protein of unknown function DUF2274; KEGG: pap:PSPA7_3696 conjugal transfer protein; hypothetical protein	complement(1657385..1657603)	Alicycliphilus denitrificans K601	10482598
YP_004387471.1	CDS	Alide2_1563	NC_015422.1	1657600	1658886	R	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: pap:PSPA7_3697 conjugation TrbI family protein; conjugation TrbI family protein	complement(1657600..1658886)	Alicycliphilus denitrificans K601	10482599
YP_004387472.1	CDS	Alide2_1564	NC_015422.1	1658889	1659872	R	KEGG: rme:Rmet_1349 conjugal transfer protein TrbG/VirB9/CagX; TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer, TrbG/VirB9/CagX; P-type conjugative transfer protein TrbG	complement(1658889..1659872)	Alicycliphilus denitrificans K601	10482600
YP_004387473.1	CDS	Alide2_1565	NC_015422.1	1659869	1660573	R	KEGG: pap:PSPA7_3699 conjugal transfer protein TrbF; conjugal transfer protein TrbF	complement(1659869..1660573)	Alicycliphilus denitrificans K601	10482601
YP_004387474.1	CDS	Alide2_1566	NC_015422.1	1660586	1661971	R	KEGG: tgr:Tgr7_1901 conjugal transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6; P-type conjugative transfer protein TrbL	complement(1660586..1661971)	Alicycliphilus denitrificans K601	10482602
YP_004387475.1	CDS	Alide2_1567	NC_015422.1	1661968	1662288	R	KEGG: pap:PSPA7_3701 putative lipoprotein; hypothetical protein	complement(1661968..1662288)	Alicycliphilus denitrificans K601	10482603
YP_004387476.1	CDS	Alide2_1568	NC_015422.1	1662301	1663026	R	TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pap:PSPA7_3702 conjugal transfer protein TrbJ; P-type conjugative transfer protein TrbJ	complement(1662301..1663026)	Alicycliphilus denitrificans K601	10482604
YP_004387477.1	CDS	Alide2_1569	NC_015422.1	1663023	1665476	R	KEGG: pap:PSPA7_3703 conjugal transfer ATPase TrbE; PFAM: CagE, TrbE, VirB component of type IV transporter system, central domain; SMART: ATPase, AAA+ type, core; CagE, TrbE, VirB component of type IV transporter system, conserved region	complement(1663023..1665476)	Alicycliphilus denitrificans K601	10482605
YP_004387478.1	CDS	Alide2_1570	NC_015422.1	1665492	1665764	R	KEGG: pap:PSPA7_3704 conjugal transfer protein; conjugal transfer protein	complement(1665492..1665764)	Alicycliphilus denitrificans K601	10482606
YP_004387479.1	CDS	Alide2_1571	NC_015422.1	1665761	1666144	R	PFAM: Conjugal transfer,TrbC; KEGG: rme:Rmet_1551 conjugal transfer protein TrbC; Conjugal transfer protein TrbC	complement(1665761..1666144)	Alicycliphilus denitrificans K601	10482607
YP_004387480.1	CDS	Alide2_1572	NC_015422.1	1666141	1667193	R	KEGG: pap:PSPA7_3706 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E; P-type conjugative transfer ATPase TrbB	complement(1666141..1667193)	Alicycliphilus denitrificans K601	10482608
YP_004387481.1	CDS	Alide2_1573	NC_015422.1	1667190	1667654	R	PFAM: CopG-like DNA-binding; KEGG: dac:Daci_0439 CopG/DNA-binding domain-containing protein; CopG-like domain-containing protein DNA-binding protein	complement(1667190..1667654)	Alicycliphilus denitrificans K601	10482609
YP_004387482.1	CDS	Alide2_1574	NC_015422.1	1667651	1669651	R	PFAM: Ti-type conjugative transfer system, TraG-like; KEGG: pau:PA14_30960 conjugal transfer coupling protein TraG; TRAG family protein	complement(1667651..1669651)	Alicycliphilus denitrificans K601	10482610
YP_004387483.1	CDS	Alide2_1575	NC_015422.1	1669887	1670165	R	KEGG: pap:PSPA7_3722 putative lipoprotein; hypothetical protein	complement(1669887..1670165)	Alicycliphilus denitrificans K601	10482611
YP_004387484.1	CDS	Alide2_1576	NC_015422.1	1670162	1671106	R	KEGG: bpt:Bpet2202 LysR family transcriptional regulator; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator	complement(1670162..1671106)	Alicycliphilus denitrificans K601	10482612
YP_004387485.1	CDS	Alide2_1577	NC_015422.1	1671209	1672462	R	PFAM: Monooxygenase, FAD-binding; KEGG: ami:Amir_4339 monooxygenase FAD-binding; monooxygenase FAD-binding protein	complement(1671209..1672462)	Alicycliphilus denitrificans K601	10482613
YP_004387486.1	CDS	Alide2_1578	NC_015422.1	1672473	1673990	R	KEGG: bbr:BB2379 outer membrane efflux protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	complement(1672473..1673990)	Alicycliphilus denitrificans K601	10482614
YP_004387487.1	CDS	Alide2_1579	NC_015422.1	1674003	1675118	R	PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component; ABC transporter	complement(1674003..1675118)	Alicycliphilus denitrificans K601	10482615
YP_004387488.1	CDS	Alide2_1580	NC_015422.1	1675124	1676266	R	PFAM: ABC-2 type transporter; KEGG: bpa:BPP1316 hypothetical protein; ABC transporter	complement(1675124..1676266)	Alicycliphilus denitrificans K601	10482616
YP_004387489.1	CDS	Alide2_1581	NC_015422.1	1676263	1678041	R	PFAM: ABC transporter-like; KEGG: pag:PLES_25911 ATP-binding protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase, polyamine-transporting ATPase	complement(1676263..1678041)	Alicycliphilus denitrificans K601	10482617
YP_004387490.1	CDS	Alide2_1582	NC_015422.1	1678038	1679036	R	PFAM: Secretion protein HlyD; KEGG: bbr:BB2383 HlyD family secretion protein; secretion protein HlyD family protein	complement(1678038..1679036)	Alicycliphilus denitrificans K601	10482618
YP_004387491.1	CDS	Alide2_1583	NC_015422.1	1679163	1679855	D	PFAM: Transcription regulator YbiH, C-terminal; Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ppg:PputGB1_3284 TetR family transcriptional regulator; TetR family transcriptional regulator	1679163..1679855	Alicycliphilus denitrificans K601	10482619
YP_004387492.1	CDS	Alide2_1584	NC_015422.1	1679860	1681881	D	KEGG: sml:Smlt1841 hypothetical protein; hypothetical protein	1679860..1681881	Alicycliphilus denitrificans K601	10482620
YP_004387493.1	CDS	Alide2_1585	NC_015422.1	1681968	1683965	R	KEGG: pap:PSPA7_3726 hypothetical protein; hypothetical protein	complement(1681968..1683965)	Alicycliphilus denitrificans K601	10482621
YP_004387494.1	CDS	Alide2_1586	NC_015422.1	1683962	1684417	R	manually curated; KEGG: sml:Smlt1309 hypothetical protein; hypothetical protein	complement(1683962..1684417)	Alicycliphilus denitrificans K601	10482622
YP_004387495.1	CDS	Alide2_1587	NC_015422.1	1684414	1685001	R	PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase S26	complement(1684414..1685001)	Alicycliphilus denitrificans K601	10482623
YP_004387496.1	CDS	Alide2_1588	NC_015422.1	1684998	1685543	R	KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein	complement(1684998..1685543)	Alicycliphilus denitrificans K601	10482624
YP_004387497.1	CDS	Alide2_1589	NC_015422.1	1685540	1685824	R	KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein	complement(1685540..1685824)	Alicycliphilus denitrificans K601	10482625
YP_004387498.1	CDS	Alide2_1590	NC_015422.1	1685821	1686459	R	KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; manually curated; PFAM: Cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase	complement(1685821..1686459)	Alicycliphilus denitrificans K601	10482626
YP_004387499.1	CDS	Alide2_1591	NC_015422.1	1686713	1687570	R	PFAM: Replication initiator protein A; KEGG: dia:Dtpsy_3526 putative replication initiator and transcription repressor protein; Replication initiator protein A	complement(1686713..1687570)	Alicycliphilus denitrificans K601	10482627
YP_004387500.1	CDS	Alide2_1592	NC_015422.1	1687597	1687878	R	KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein	complement(1687597..1687878)	Alicycliphilus denitrificans K601	10482628
YP_004387501.1	CDS	Alide2_1593	NC_015422.1	1687963	1688736	R	PFAM: Protein of unknown function DUF2285; KEGG: dac:Daci_0459 hypothetical protein; hypothetical protein	complement(1687963..1688736)	Alicycliphilus denitrificans K601	10482629
YP_004387502.1	CDS	Alide2_1594	NC_015422.1	1689046	1689549	R	manually curated; KEGG: rme:Rmet_1250 hypothetical protein; hypothetical protein	complement(1689046..1689549)	Alicycliphilus denitrificans K601	10482630
YP_004387503.1	CDS	Alide2_1595	NC_015422.1	1689637	1689942	D	KEGG: rme:Rmet_1249 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	1689637..1689942	Alicycliphilus denitrificans K601	10482631
YP_004387504.1	CDS	Alide2_1596	NC_015422.1	1690006	1690359	R	KEGG: ajs:Ajs_2644 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF736; hypothetical protein	complement(1690006..1690359)	Alicycliphilus denitrificans K601	10482632
YP_004387505.1	CDS	Alide2_1597	NC_015422.1	1691106	1691435	D	SMART: HTH transcriptional regulator, ArsR; KEGG: bpt:Bpet1026 ArsR family transcriptional regulator; regulatory protein ArsR	1691106..1691435	Alicycliphilus denitrificans K601	10482633
YP_004387506.1	CDS	Alide2_1598	NC_015422.1	1691449	1691919	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_0488 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase	1691449..1691919	Alicycliphilus denitrificans K601	10482634
YP_004387507.1	CDS	Alide2_1599	NC_015422.1	1691932	1692429	D	KEGG: bpt:Bpet1024 hypothetical protein; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase	1691932..1692429	Alicycliphilus denitrificans K601	10482635
YP_004387508.1	CDS	Alide2_1600	NC_015422.1	1692440	1693525	D	KEGG: dac:Daci_0490 arsenical-resistance protein; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter; arsenical-resistance protein	1692440..1693525	Alicycliphilus denitrificans K601	10482636
YP_004387509.1	CDS	Alide2_1601	NC_015422.1	1693543	1693965	D	TIGRFAM: Arsenate reductase; KEGG: rpf:Rpic12D_0647 arsenate reductase; PFAM: Arsenate reductase-like; arsenate reductase	1693543..1693965	Alicycliphilus denitrificans K601	10482637
YP_004387510.1	CDS	Alide2_1602	NC_015422.1	1694064	1694366	D	PFAM: Transcription regulator PadR N-terminal-like; KEGG: oan:Oant_4665 PadR-like family transcriptional regulator; PadR-like family transcriptional regulator	1694064..1694366	Alicycliphilus denitrificans K601	10482638
YP_004387511.1	CDS	Alide2_1603	NC_015422.1	1694363	1695592	D	KEGG: bav:BAV1573 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter	1694363..1695592	Alicycliphilus denitrificans K601	10482639
YP_004387512.1	CDS	Alide2_1604	NC_015422.1	1695598	1696128	D	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: rme:Rmet_1246 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	1695598..1696128	Alicycliphilus denitrificans K601	10482640
YP_004387513.1	CDS	Alide2_1605	NC_015422.1	1696336	1698387	R	KEGG: rme:Rmet_1245 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease	complement(1696336..1698387)	Alicycliphilus denitrificans K601	10482641
YP_004387514.1	CDS	Alide2_1606	NC_015422.1	1698465	1699289	R	PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_2639 hypothetical protein; hypothetical protein	complement(1698465..1699289)	Alicycliphilus denitrificans K601	10482642
YP_004387515.1	CDS	Alide2_1607	NC_015422.1	1699816	1700484	D	KEGG: dia:Dtpsy_1275 hypothetical protein; hypothetical protein	1699816..1700484	Alicycliphilus denitrificans K601	10482643
YP_004387516.1	CDS	Alide2_1608	NC_015422.1	1700515	1700865	R	KEGG: rme:Rmet_3038 hypothetical protein; hypothetical protein	complement(1700515..1700865)	Alicycliphilus denitrificans K601	10482644
YP_004387517.1	CDS	Alide2_1609	NC_015422.1	1701147	1701653	R	KEGG: tgr:Tgr7_1867 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC	complement(1701147..1701653)	Alicycliphilus denitrificans K601	10482645
YP_004387518.1	CDS	Alide2_1610	NC_015422.1	1702066	1703208	D	KEGG: ajs:Ajs_2635 hypothetical protein; hypothetical protein	1702066..1703208	Alicycliphilus denitrificans K601	10482646
YP_004387519.1	CDS	Alide2_1611	NC_015422.1	1703212	1703799	D	manually curated; KEGG: dia:Dtpsy_1271 hypothetical protein; hypothetical protein	1703212..1703799	Alicycliphilus denitrificans K601	10482647
YP_004387520.1	CDS	Alide2_1612	NC_015422.1	1703841	1704326	D	PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2632 hypothetical protein; hypothetical protein	1703841..1704326	Alicycliphilus denitrificans K601	10482648
YP_004387521.1	CDS	Alide2_1613	NC_015422.1	1704343	1705005	R	PFAM: Uracil-DNA glycosylase-like; KEGG: ajs:Ajs_2631 hypothetical protein; Uracil-DNA glycosylase superfamily	complement(1704343..1705005)	Alicycliphilus denitrificans K601	10482649
YP_004387522.1	CDS	Alide2_1614	NC_015422.1	1705002	1706138	R	KEGG: ajs:Ajs_2630 hypothetical protein; hypothetical protein	complement(1705002..1706138)	Alicycliphilus denitrificans K601	10482650
YP_004387523.1	CDS	Alide2_1615	NC_015422.1	1706142	1706768	R	manually curated; KEGG: ajs:Ajs_2629 hypothetical protein; hypothetical protein	complement(1706142..1706768)	Alicycliphilus denitrificans K601	10482651
YP_004387524.1	CDS	Alide2_1616	NC_015422.1	1706768	1707235	R	PFAM: MTH538 TIR-like domain; KEGG: ajs:Ajs_2628 hypothetical protein; hypothetical protein	complement(1706768..1707235)	Alicycliphilus denitrificans K601	10482652
YP_004387525.1	CDS	Alide2_1617	NC_015422.1	1707324	1707626	R	KEGG: ajs:Ajs_2627 transcriptional regulator; XRE family transcriptional regulator	complement(1707324..1707626)	Alicycliphilus denitrificans K601	10482653
YP_004387526.1	CDS	Alide2_1618	NC_015422.1	1707610	1707993	R	KEGG: ajs:Ajs_2626 hypothetical protein; hypothetical protein	complement(1707610..1707993)	Alicycliphilus denitrificans K601	10482654
YP_004387527.1	CDS	Alide2_1619	NC_015422.1	1708133	1709335	R	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; integrase family protein	complement(1708133..1709335)	Alicycliphilus denitrificans K601	10482655
YP_004387528.1	CDS	Alide2_1620	NC_015422.1	1709584	1710213	D	KEGG: ajs:Ajs_2624 hypothetical protein; hypothetical protein	1709584..1710213	Alicycliphilus denitrificans K601	10482656
YP_004387529.1	CDS	Alide2_1621	NC_015422.1	1710338	1712296	D	TIGRFAM: Excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; KEGG: dia:Dtpsy_1185 excinuclease ABC subunit C; SMART: Excinuclease ABC, C subunit, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; excinuclease ABC subunit C	1710338..1712296	Alicycliphilus denitrificans K601	10482657
YP_004387530.1	CDS	Alide2_1622	NC_015422.1	1712326	1712913	D	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: dia:Dtpsy_1186 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase	1712326..1712913	Alicycliphilus denitrificans K601	10482658
YP_004387531.1	CDS	Alide2_1623	NC_015422.1	1713258	1713530	D	KEGG: dia:Dtpsy_1187 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein	1713258..1713530	Alicycliphilus denitrificans K601	10482659
YP_004387532.1	CDS	Alide2_1624	NC_015422.1	1713680	1715602	D	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_1188 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	1713680..1715602	Alicycliphilus denitrificans K601	10482661
YP_004387533.1	CDS	Alide2_1625	NC_015422.1	1715960	1717180	R	PFAM: Extracellular ligand-binding receptor; KEGG: mno:Mnod_4450 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(1715960..1717180)	Alicycliphilus denitrificans K601	10482662
YP_004387534.1	CDS	Alide2_1626	NC_015422.1	1717307	1718092	R	PFAM: Crotonase, core; KEGG: mlo:mll1009 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(1717307..1718092)	Alicycliphilus denitrificans K601	10482663
YP_004387535.1	CDS	Alide2_1627	NC_015422.1	1718192	1719553	D	KEGG: rxy:Rxyl_1851 phenylacetate-CoA ligase; Phenylacetate--CoA ligase	1718192..1719553	Alicycliphilus denitrificans K601	10482664
YP_004387536.1	CDS	Alide2_1628	NC_015422.1	1719573	1721153	D	KEGG: pol:Bpro_5271 carboxyl transferase; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase	1719573..1721153	Alicycliphilus denitrificans K601	10482665
YP_004387537.1	CDS	Alide2_1629	NC_015422.1	1721162	1723168	D	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: pol:Bpro_5270 carbamoyl-phosphate synthase L chain, ATP-binding; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase	1721162..1723168	Alicycliphilus denitrificans K601	10482666
YP_004387538.1	CDS	Alide2_1630	NC_015422.1	1723184	1724143	D	KEGG: pol:Bpro_5269 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase	1723184..1724143	Alicycliphilus denitrificans K601	10482667
YP_004387539.1	CDS	Alide2_1631	NC_015422.1	1724194	1725723	D	KEGG: rlt:Rleg2_6334 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	1724194..1725723	Alicycliphilus denitrificans K601	10482668
YP_004387540.1	CDS	Alide2_1632	NC_015422.1	1725773	1726366	R	PFAM: Transcription regulator YsiA, C-terminal; KEGG: azc:AZC_4590 transcriptional regulator; TetR family transcriptional regulator	complement(1725773..1726366)	Alicycliphilus denitrificans K601	10482669
YP_004387541.1	CDS	Alide2_1633	NC_015422.1	1726509	1727345	R	PFAM: Crotonase, core; KEGG: pol:Bpro_1631 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	complement(1726509..1727345)	Alicycliphilus denitrificans K601	10482670
YP_004387542.1	CDS	Alide2_1635	NC_015422.1	1727720	1728625	D	TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; KEGG: dia:Dtpsy_2386 cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase	1727720..1728625	Alicycliphilus denitrificans K601	10482673
YP_004387543.1	CDS	Alide2_1636	NC_015422.1	1728631	1729194	D	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_2385 NUDIX hydrolase; NUDIX hydrolase	1728631..1729194	Alicycliphilus denitrificans K601	10482674
YP_004387544.1	CDS	Alide2_1637	NC_015422.1	1729200	1729427	D	PFAM: SirA-like; KEGG: dia:Dtpsy_2384 SirA family protein; SirA-like domain-containing protein	1729200..1729427	Alicycliphilus denitrificans K601	10482675
YP_004387545.1	CDS	Alide2_1638	NC_015422.1	1729518	1730402	R	TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dia:Dtpsy_2383 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase	complement(1729518..1730402)	Alicycliphilus denitrificans K601	10482676
YP_004387546.1	CDS	Alide2_1639	NC_015422.1	1730510	1733416	R	TIGRFAM: Valyl-tRNA synthetase; HAMAP: Valyl-tRNA synthetase; KEGG: ajs:Ajs_2896 valyl-tRNA synthetase; Valyl-tRNA synthetase	complement(1730510..1733416)	Alicycliphilus denitrificans K601	10482677
YP_004387547.1	CDS	Alide2_1640	NC_015422.1	1733544	1734149	R	KEGG: pol:Bpro_1263 hypothetical protein; hypothetical protein	complement(1733544..1734149)	Alicycliphilus denitrificans K601	10482678
YP_004387548.1	CDS	Alide2_1641	NC_015422.1	1734146	1734781	R	PFAM: Copper chaperone SCO1/SenC; KEGG: net:Neut_1585 hypothetical protein; electron transport protein SCO1/SenC	complement(1734146..1734781)	Alicycliphilus denitrificans K601	10482679
YP_004387549.1	CDS	Alide2_1642	NC_015422.1	1734789	1735382	R	PFAM: Cytochrome c, class I; KEGG: net:Neut_1584 cytochrome c, class I; cytochrome c class I	complement(1734789..1735382)	Alicycliphilus denitrificans K601	10482680
YP_004387550.1	CDS	Alide2_1643	NC_015422.1	1735396	1736043	R	PFAM: Cytochrome c oxidase, monohaem subunit/FixO; KEGG: net:Neut_1583 cytochrome c oxidase, mono-heme subunit/FixO; cytochrome C oxidase mono-heme subunit/FixO	complement(1735396..1736043)	Alicycliphilus denitrificans K601	10482681
YP_004387551.1	CDS	Alide2_1644	NC_015422.1	1736033	1737688	R	KEGG: net:Neut_1582 cytochrome c oxidase, subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome-c oxidase	complement(1736033..1737688)	Alicycliphilus denitrificans K601	10482682
YP_004387552.1	CDS	Alide2_1645	NC_015422.1	1737942	1739231	R	PFAM: HemY, N-terminal; KEGG: ajs:Ajs_2893 HemY domain-containing protein; HemY domain-containing protein	complement(1737942..1739231)	Alicycliphilus denitrificans K601	10482683
YP_004387553.1	CDS	Alide2_1646	NC_015422.1	1739257	1740336	R	PFAM: HemX; KEGG: ajs:Ajs_2892 protein of unknown function DUF513, HemX; hemX domain-containing protein	complement(1739257..1740336)	Alicycliphilus denitrificans K601	10482684
YP_004387554.1	CDS	Alide2_1647	NC_015422.1	1740326	1741150	R	KEGG: ajs:Ajs_2891 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase	complement(1740326..1741150)	Alicycliphilus denitrificans K601	10482685
YP_004387555.1	CDS	Alide2_1648	NC_015422.1	1741144	1742073	R	PFAM: Porphobilinogen deaminase, N-terminal; Porphobilinogen deaminase, C-terminal domain; TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; KEGG: dia:Dtpsy_2377 porphobilinogen deaminase; Porphobilinogen deaminase	complement(1741144..1742073)	Alicycliphilus denitrificans K601	10482686
YP_004387556.1	CDS	Alide2_1649	NC_015422.1	1742193	1745036	D	KEGG: dia:Dtpsy_2376 phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase	1742193..1745036	Alicycliphilus denitrificans K601	10482687
YP_004387557.1	CDS	Alide2_1650	NC_015422.1	1745069	1745608	R	PFAM: Flagellar transcriptional activator FlhC; KEGG: ajs:Ajs_2885 transcriptional activator FlhC; flagellar transcriptional activator FlhC	complement(1745069..1745608)	Alicycliphilus denitrificans K601	10482688
YP_004387558.1	CDS	Alide2_1651	NC_015422.1	1745645	1745974	R	PFAM: Flagellar transcriptional activator; KEGG: ajs:Ajs_2884 flagellar transcriptional activator, FlhD subunit; flagellar transcriptional activator	complement(1745645..1745974)	Alicycliphilus denitrificans K601	10482689
YP_004387559.1	CDS	Alide2_1652	NC_015422.1	1746201	1746677	R	KEGG: dia:Dtpsy_2370 bacterioferritin; TIGRFAM: Bacterioferritin; PFAM: Ferritin/Dps protein; bacterioferritin	complement(1746201..1746677)	Alicycliphilus denitrificans K601	10482690
YP_004387560.1	CDS	Alide2_1653	NC_015422.1	1746893	1747468	D	TIGRFAM: Peroxiredoxin; KEGG: xtr:100496295 alkyl hydroperoxide reductase subunit C-like; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; Peroxiredoxin, C-terminal; peroxiredoxin	1746893..1747468	Alicycliphilus denitrificans K601	10482691
YP_004387561.1	CDS	Alide2_1654	NC_015422.1	1747564	1749132	D	TIGRFAM: Alkyl hydroperoxide reductase, subunit F; KEGG: xtr:100496451 alkyl hydroperoxide reductase subunit F-like; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin; alkyl hydroperoxide reductase subunit F	1747564..1749132	Alicycliphilus denitrificans K601	10482692
YP_004387562.1	CDS	Alide2_1655	NC_015422.1	1749201	1750658	D	KEGG: gpb:HDN1F_12050 catalase; PFAM: Catalase-related subgroup; Catalase-related immune responsive; Catalase	1749201..1750658	Alicycliphilus denitrificans K601	10482693
YP_004387563.1	CDS	Alide2_1656	NC_015422.1	1750714	1751091	D	KEGG: mpt:Mpe_A2670 hypothetical protein; hypothetical protein	1750714..1751091	Alicycliphilus denitrificans K601	10482694
YP_004387564.1	CDS	Alide2_1657	NC_015422.1	1751273	1752541	D	PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1332 outer membrane efflux protein; outer membrane efflux protein	1751273..1752541	Alicycliphilus denitrificans K601	10482695
YP_004387565.1	CDS	Alide2_1658	NC_015422.1	1752649	1753194	D	KEGG: dia:Dtpsy_1144 hypothetical protein; hypothetical protein	1752649..1753194	Alicycliphilus denitrificans K601	10482696
YP_004387566.1	CDS	Alide2_1659	NC_015422.1	1753191	1754303	D	KEGG: xtr:100489290 hypothetical protein LOC100489290; hypothetical protein	1753191..1754303	Alicycliphilus denitrificans K601	10482697
YP_004387567.1	CDS	Alide2_1660	NC_015422.1	1754317	1757436	D	KEGG: tmz:Tmz1t_2382 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	1754317..1757436	Alicycliphilus denitrificans K601	10482698
YP_004387568.1	CDS	Alide2_1661	NC_015422.1	1757470	1758357	R	KEGG: aav:Aave_1381 hypothetical protein; HAMAP: Protein of unknown function DUF299, phosphotransferase, predicted; PFAM: Protein of unknown function DUF299, phosphotransferase, predicted; phosphotransferase ydiA	complement(1757470..1758357)	Alicycliphilus denitrificans K601	10482699
YP_004387569.1	CDS	Alide2_1662	NC_015422.1	1758523	1760913	D	TIGRFAM: Phosphoenolpyruvate synthase; KEGG: dia:Dtpsy_2366 phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme; phosphoenolpyruvate synthase	1758523..1760913	Alicycliphilus denitrificans K601	10482700
YP_004387570.1	CDS	Alide2_1663	NC_015422.1	1760930	1761247	D	TIGRFAM: Sodium symporter small subunit, predicted; KEGG: ajs:Ajs_2878 hypothetical protein; putative solute symporter protein	1760930..1761247	Alicycliphilus denitrificans K601	10482701
YP_004387571.1	CDS	Alide2_1664	NC_015422.1	1761240	1763324	D	KEGG: dia:Dtpsy_2364 calcium-binding EF-hand-containing protein; TIGRFAM: Sodium/solute symporter, VC2705 subfamily; PFAM: Sodium/solute symporter; putative sodium symporter protein	1761240..1763324	Alicycliphilus denitrificans K601	10482702
YP_004387572.1	CDS	Alide2_1665	NC_015422.1	1763445	1763903	D	KEGG: ajs:Ajs_2876 hypothetical protein; hypothetical protein	1763445..1763903	Alicycliphilus denitrificans K601	10482703
YP_004387573.1	CDS	Alide2_1666	NC_015422.1	1763970	1765754	R	KEGG: rpi:Rpic_2638 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(1763970..1765754)	Alicycliphilus denitrificans K601	10482704
YP_004387574.1	CDS	Alide2_1667	NC_015422.1	1765910	1766938	R	KEGG: ppw:PputW619_3351 AraC family transcriptional regulator; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator	complement(1765910..1766938)	Alicycliphilus denitrificans K601	10482705
YP_004387575.1	CDS	Alide2_1668	NC_015422.1	1767282	1768496	D	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0182 extracellular ligand-binding receptor; extracellular ligand-binding receptor	1767282..1768496	Alicycliphilus denitrificans K601	10482706
YP_004387576.1	CDS	Alide2_1669	NC_015422.1	1768531	1769676	D	KEGG: rpi:Rpic_2632 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Long-chain-acyl-CoA dehydrogenase	1768531..1769676	Alicycliphilus denitrificans K601	10482707
YP_004387577.1	CDS	Alide2_1670	NC_015422.1	1769673	1770752	D	KEGG: rpi:Rpic_2631 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase	1769673..1770752	Alicycliphilus denitrificans K601	10482708
YP_004387578.1	CDS	Alide2_1671	NC_015422.1	1770749	1772422	D	KEGG: rpi:Rpic_2630 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	1770749..1772422	Alicycliphilus denitrificans K601	10482709
YP_004387579.1	CDS	Alide2_1672	NC_015422.1	1772470	1773666	D	TIGRFAM: Thiolase; KEGG: rpi:Rpic_2629 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	1772470..1773666	Alicycliphilus denitrificans K601	10482710
YP_004387580.1	CDS	Alide2_1673	NC_015422.1	1773663	1774439	D	PFAM: Crotonase, core; KEGG: rpi:Rpic_2628 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	1773663..1774439	Alicycliphilus denitrificans K601	10482711
YP_004387581.1	CDS	Alide2_1674	NC_015422.1	1774471	1775253	D	KEGG: rpi:Rpic_2627 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase	1774471..1775253	Alicycliphilus denitrificans K601	10482712
YP_004387582.1	CDS	Alide2_1676	NC_015422.1	1776637	1777191	R	SMART: Elongation factor P, C-terminal; TIGRFAM: Translation elongation factor P; KEGG: xtr:100493038 elongation factor P-like; HAMAP: Translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor, KOW-like; Translation elongation factor P/YeiP, central; Elongation factor P	complement(1776637..1777191)	Alicycliphilus denitrificans K601	10482714
YP_004387583.1	CDS	Alide2_1677	NC_015422.1	1777351	1778433	R	KEGG: ajs:Ajs_2874 hypothetical protein; TIGRFAM: Uncharacterised conserved protein UCP015557; PFAM: Uncharacterised conserved protein UCP015557; hypothetical protein	complement(1777351..1778433)	Alicycliphilus denitrificans K601	10482715
YP_004387584.1	CDS	Alide2_1678	NC_015422.1	1778430	1779332	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2873 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(1778430..1779332)	Alicycliphilus denitrificans K601	10482716
YP_004387585.1	CDS	Alide2_1679	NC_015422.1	1779460	1780665	D	KEGG: dia:Dtpsy_2359 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1779460..1780665	Alicycliphilus denitrificans K601	10482717
YP_004387586.1	CDS	Alide2_1680	NC_015422.1	1780662	1781633	D	KEGG: dia:Dtpsy_2358 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase	1780662..1781633	Alicycliphilus denitrificans K601	10482718
YP_004387587.1	CDS	Alide2_1681	NC_015422.1	1781676	1782665	D	KEGG: dia:Dtpsy_2357 hypothetical protein; hypothetical protein	1781676..1782665	Alicycliphilus denitrificans K601	10482719
YP_004387588.1	CDS	Alide2_1682	NC_015422.1	1782710	1783693	D	KEGG: ajs:Ajs_2869 hypothetical protein; hypothetical protein	1782710..1783693	Alicycliphilus denitrificans K601	10482720
YP_004387589.1	CDS	Alide2_1683	NC_015422.1	1783728	1784654	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_0157 L-carnitine dehydratase/bile acid-inducible; LysR family transcriptional regulator	complement(1783728..1784654)	Alicycliphilus denitrificans K601	10482721
YP_004387590.1	CDS	Alide2_1684	NC_015422.1	1784746	1785957	D	KEGG: xtr:100493857 uncharacterized protein yfdE-like; PFAM: CoA-transferase family III; formyl-CoA transferase	1784746..1785957	Alicycliphilus denitrificans K601	10482722
YP_004387591.1	CDS	Alide2_1685	NC_015422.1	1785996	1787153	D	KEGG: xtr:100494035 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	1785996..1787153	Alicycliphilus denitrificans K601	10482723
YP_004387592.1	CDS	Alide2_1686	NC_015422.1	1787361	1788326	D	KEGG: aav:Aave_2969 substrate-binding region of ABC-type glycine betaine transport system; glycine/betaine ABC transporter substrate-binding protein	1787361..1788326	Alicycliphilus denitrificans K601	10482724
YP_004387593.1	CDS	Alide2_1687	NC_015422.1	1788352	1789191	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: xtr:100494207 probable ABC transporter permease protein BruAb2_1124-like; ABC transporter permease	1788352..1789191	Alicycliphilus denitrificans K601	10482725
YP_004387594.1	CDS	Alide2_1688	NC_015422.1	1789191	1789973	D	PFAM: ABC transporter-like; KEGG: xtr:100494366 uncharacterized ABC transporter ATP-binding protein MJ0412-like; SMART: ATPase, AAA+ type, core; Taurine-transporting ATPase	1789191..1789973	Alicycliphilus denitrificans K601	10482726
YP_004387595.1	CDS	Alide2_1689	NC_015422.1	1789990	1790772	D	TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: aav:Aave_2966 histidine utilization repressor; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	1789990..1790772	Alicycliphilus denitrificans K601	10482727
YP_004387596.1	CDS	Alide2_1690	NC_015422.1	1790836	1792425	D	PFAM: Phenylalanine/histidine ammonia-lyase; TIGRFAM: Histidine ammonia-lyase; HAMAP: Histidine ammonia-lyase; KEGG: aav:Aave_2965 histidine ammonia-lyase; histidine ammonia-lyase	1790836..1792425	Alicycliphilus denitrificans K601	10482728
YP_004387597.1	CDS	Alide2_1691	NC_015422.1	1792426	1793151	R	TIGRFAM: Histidine utilization repressor; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; KEGG: ctt:CtCNB1_0165 transcriptional regulator, histidine; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(1792426..1793151)	Alicycliphilus denitrificans K601	10482729
YP_004387598.1	CDS	Alide2_1692	NC_015422.1	1793294	1794772	D	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_0166 cytosine/purines/uracil permease; permease for cytosine/purines uracil thiamine allantoin	1793294..1794772	Alicycliphilus denitrificans K601	10482730
YP_004387599.1	CDS	Alide2_1693	NC_015422.1	1794816	1796537	D	TIGRFAM: Urocanase; KEGG: dac:Daci_0150 urocanate hydratase; PFAM: Urocanase; urocanate hydratase	1794816..1796537	Alicycliphilus denitrificans K601	10482731
YP_004387600.1	CDS	Alide2_1694	NC_015422.1	1796626	1797405	D	KEGG: pol:Bpro_1041 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	1796626..1797405	Alicycliphilus denitrificans K601	10482732
YP_004387601.1	CDS	Alide2_1695	NC_015422.1	1797450	1798205	D	KEGG: pol:Bpro_1040 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; Ionotropic glutamate receptor; ABC transporter substrate-binding protein	1797450..1798205	Alicycliphilus denitrificans K601	10482733
YP_004387602.1	CDS	Alide2_1696	NC_015422.1	1798220	1798888	D	KEGG: pol:Bpro_1039 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	1798220..1798888	Alicycliphilus denitrificans K601	10482734
YP_004387603.1	CDS	Alide2_1697	NC_015422.1	1798885	1799667	D	PFAM: ABC transporter-like; KEGG: pol:Bpro_1038 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase	1798885..1799667	Alicycliphilus denitrificans K601	10482735
YP_004387604.1	CDS	Alide2_1698	NC_015422.1	1799673	1800275	D	PFAM: Uncharacterised protein family HutD; KEGG: aav:Aave_2962 hypothetical protein; HutD family protein	1799673..1800275	Alicycliphilus denitrificans K601	10482736
YP_004387605.1	CDS	Alide2_1699	NC_015422.1	1800601	1801839	D	TIGRFAM: Imidazolonepropionase; KEGG: pol:Bpro_1035 imidazolonepropionase; PFAM: Amidohydrolase 1; imidazolonepropionase	1800601..1801839	Alicycliphilus denitrificans K601	10482737
YP_004387606.1	CDS	Alide2_1700	NC_015422.1	1801844	1803277	D	KEGG: dac:Daci_0155 N-formimino-L-glutamate deiminase; TIGRFAM: Formiminoglutamate deiminase; PFAM: Amidohydrolase 1; formiminoglutamate deiminase	1801844..1803277	Alicycliphilus denitrificans K601	10482738
YP_004387607.1	CDS	Alide2_1701	NC_015422.1	1803306	1804127	D	KEGG: aav:Aave_2959 N-formylglutamate amidohydrolase; TIGRFAM: N-formylglutamate deformylase; PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase	1803306..1804127	Alicycliphilus denitrificans K601	10482739
YP_004387608.1	CDS	Alide2_1702	NC_015422.1	1804124	1804987	R	TIGRFAM: Glutamate racemase; KEGG: ajs:Ajs_2867 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase	complement(1804124..1804987)	Alicycliphilus denitrificans K601	10482740
YP_004387609.1	CDS	Alide2_1703	NC_015422.1	1805028	1805651	R	PFAM: Protein of unknown function DUF938; KEGG: dia:Dtpsy_2352 protein of unknown function DUF938; hypothetical protein	complement(1805028..1805651)	Alicycliphilus denitrificans K601	10482741
YP_004387610.1	CDS	Alide2_1704	NC_015422.1	1805852	1806655	R	KEGG: aav:Aave_2080 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PFAM: Aldehyde-lyase domain; 4-hydroxy-2-oxovalerate aldolase	complement(1805852..1806655)	Alicycliphilus denitrificans K601	10482742
YP_004387611.1	CDS	Alide2_1705	NC_015422.1	1806662	1808131	R	TIGRFAM: Succinic semialdehyde dehydrogenase; KEGG: dac:Daci_2346 succinic semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; succinic semialdehyde dehydrogenase	complement(1806662..1808131)	Alicycliphilus denitrificans K601	10482743
YP_004387612.1	CDS	Alide2_1706	NC_015422.1	1808198	1809721	R	PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; KEGG: ctt:CtCNB1_3469 outer membrane protein precursor; SMART: SAF domain; galactarate dehydratase	complement(1808198..1809721)	Alicycliphilus denitrificans K601	10482744
YP_004387613.1	CDS	Alide2_1707	NC_015422.1	1809718	1810707	R	KEGG: ctt:CtCNB1_3468 TctC; hypothetical protein	complement(1809718..1810707)	Alicycliphilus denitrificans K601	10482745
YP_004387614.1	CDS	Alide2_1708	NC_015422.1	1810807	1811769	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_2084 LysR family transcriptional regulator; LysR family transcriptional regulator	1810807..1811769	Alicycliphilus denitrificans K601	10482746
YP_004387615.1	CDS	Alide2_1709	NC_015422.1	1811771	1812790	R	PFAM: Patatin/Phospholipase A2-related; KEGG: dac:Daci_3706 patatin; Patatin	complement(1811771..1812790)	Alicycliphilus denitrificans K601	10482747
YP_004387616.1	CDS	Alide2_1710	NC_015422.1	1812962	1814053	R	TIGRFAM: Tartrate dehydrogenase; KEGG: aav:Aave_2087 tartrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase	complement(1812962..1814053)	Alicycliphilus denitrificans K601	10482748
YP_004387617.1	CDS	Alide2_1711	NC_015422.1	1814094	1815050	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_2361 LysR family transcriptional regulator; LysR family transcriptional regulator	1814094..1815050	Alicycliphilus denitrificans K601	10482749
YP_004387618.1	CDS	Alide2_1712	NC_015422.1	1815067	1816068	R	KEGG: dia:Dtpsy_0973 hypothetical protein; hypothetical protein	complement(1815067..1816068)	Alicycliphilus denitrificans K601	10482750
YP_004387619.1	CDS	Alide2_1713	NC_015422.1	1816137	1816277	R	hypothetical protein	complement(1816137..1816277)	Alicycliphilus denitrificans K601	10482751
YP_004387620.1	CDS	Alide2_1714	NC_015422.1	1816411	1816548	R	KEGG: abb:ABBFA_001155 transcriptional regulatory protein QseB; transcriptional regulatory protein QseB	complement(1816411..1816548)	Alicycliphilus denitrificans K601	10482752
YP_004387621.1	CDS	Alide2_1715	NC_015422.1	1816723	1817058	D	KEGG: pol:Bpro_4958 histone-like DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein	1816723..1817058	Alicycliphilus denitrificans K601	10482753
YP_004387622.1	CDS	Alide2_1716	NC_015422.1	1817156	1817638	D	KEGG: pol:Bpro_5021 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	1817156..1817638	Alicycliphilus denitrificans K601	10482754
YP_004387623.1	CDS	Alide2_1717	NC_015422.1	1817975	1818871	R	KEGG: tmz:Tmz1t_1027 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator	complement(1817975..1818871)	Alicycliphilus denitrificans K601	10482755
YP_004387624.1	CDS	Alide2_1719	NC_015422.1	1819136	1819882	R	SMART: Polyketide synthase/Fatty acid synthase, KR; TIGRFAM: Acetoacetyl-CoA reductase; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase; PFAM: Short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase	complement(1819136..1819882)	Alicycliphilus denitrificans K601	10482757
YP_004387625.1	CDS	Alide2_1720	NC_015422.1	1819893	1820336	R	KEGG: tmz:Tmz1t_1024 hypothetical protein; hypothetical protein	complement(1819893..1820336)	Alicycliphilus denitrificans K601	10482758
YP_004387626.1	CDS	Alide2_1721	NC_015422.1	1820445	1822205	R	PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: tmz:Tmz1t_1023 poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein	complement(1820445..1822205)	Alicycliphilus denitrificans K601	10482759
YP_004387627.1	CDS	Alide2_1722	NC_015422.1	1822541	1823149	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: tmz:Tmz1t_1022 transcriptional regulator, TetR family; TetR family transcriptional regulator	1822541..1823149	Alicycliphilus denitrificans K601	10482760
YP_004387628.1	CDS	Alide2_1723	NC_015422.1	1823343	1823762	D	KEGG: tmz:Tmz1t_1021 hypothetical protein; hypothetical protein	1823343..1823762	Alicycliphilus denitrificans K601	10482761
YP_004387629.1	CDS	Alide2_1724	NC_015422.1	1823790	1824830	D	PFAM: Secretion protein HlyD; KEGG: tmz:Tmz1t_1020 hypothetical protein; secretion protein HlyD family protein	1823790..1824830	Alicycliphilus denitrificans K601	10482762
YP_004387630.1	CDS	Alide2_1725	NC_015422.1	1824832	1826604	D	PFAM: ABC transporter-like; KEGG: tmz:Tmz1t_1019 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	1824832..1826604	Alicycliphilus denitrificans K601	10482763
YP_004387631.1	CDS	Alide2_1726	NC_015422.1	1826601	1827770	D	PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1018 ABC-2 type transporter; ABC transporter	1826601..1827770	Alicycliphilus denitrificans K601	10482764
YP_004387632.1	CDS	Alide2_1727	NC_015422.1	1827775	1828893	D	PFAM: ABC-2 type transporter; KEGG: tmz:Tmz1t_1017 ABC-2 type transporter; ABC transporter	1827775..1828893	Alicycliphilus denitrificans K601	10482765
YP_004387633.1	CDS	Alide2_1728	NC_015422.1	1828890	1830428	D	KEGG: rme:Rmet_1267 RND efflux system outer membrane lipoprotein NodT; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	1828890..1830428	Alicycliphilus denitrificans K601	10482766
YP_004387634.1	CDS	Alide2_1729	NC_015422.1	1830449	1830652	D	PFAM: Protein of unknown function DUF2892; KEGG: tmz:Tmz1t_1015 hypothetical protein; hypothetical protein	1830449..1830652	Alicycliphilus denitrificans K601	10482767
YP_004387635.1	CDS	Alide2_1730	NC_015422.1	1830660	1832069	D	KEGG: rme:Rmet_1266 beta-lactamase-like protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	1830660..1832069	Alicycliphilus denitrificans K601	10482768
YP_004387636.1	CDS	Alide2_1731	NC_015422.1	1832069	1832935	D	KEGG: rme:Rmet_1265 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein	1832069..1832935	Alicycliphilus denitrificans K601	10482769
YP_004387637.1	CDS	Alide2_1732	NC_015422.1	1832932	1834131	D	PFAM: Protein of unknown function DUF2219; KEGG: rme:Rmet_1261 hypothetical protein; hypothetical protein	1832932..1834131	Alicycliphilus denitrificans K601	10482770
YP_004387638.1	CDS	Alide2_1733	NC_015422.1	1834180	1834653	D	KEGG: tmz:Tmz1t_1007 hypothetical protein; hypothetical protein	1834180..1834653	Alicycliphilus denitrificans K601	10482771
YP_004387639.1	CDS	Alide2_1735	NC_015422.1	1835667	1836578	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tmz:Tmz1t_1002 transcriptional regulator, LysR family; LysR family transcriptional regulator	1835667..1836578	Alicycliphilus denitrificans K601	10482773
YP_004387640.1	CDS	Alide2_1736	NC_015422.1	1837133	1837888	D	KEGG: tmz:Tmz1t_1001 hypothetical protein; hypothetical protein	1837133..1837888	Alicycliphilus denitrificans K601	10482774
YP_004387641.1	CDS	Alide2_1737	NC_015422.1	1838013	1838231	D	PFAM: Prophage CP4-57 regulatory; KEGG: tmz:Tmz1t_1000 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA	1838013..1838231	Alicycliphilus denitrificans K601	10482775
YP_004387642.1	CDS	Alide2_1738	NC_015422.1	1838272	1839138	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tmz:Tmz1t_0999 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase	1838272..1839138	Alicycliphilus denitrificans K601	10482776
YP_004387643.1	CDS	Alide2_1739	NC_015422.1	1839122	1839358	D	KEGG: tmz:Tmz1t_0998 hypothetical protein; hypothetical protein	1839122..1839358	Alicycliphilus denitrificans K601	10482777
YP_004387644.1	CDS	Alide2_1740	NC_015422.1	1839345	1840994	D	KEGG: tmz:Tmz1t_0997 hypothetical protein; manually curated; TIGRFAM: Integrating conjugative element, PFGI-1, ParB; integrating conjugative element ParB	1839345..1840994	Alicycliphilus denitrificans K601	10482778
YP_004387645.1	CDS	Alide2_1741	NC_015422.1	1841012	1841572	D	KEGG: mpt:Mpe_A2335 hypothetical protein; hypothetical protein	1841012..1841572	Alicycliphilus denitrificans K601	10482779
YP_004387646.1	CDS	Alide2_1742	NC_015422.1	1841576	1842778	D	KEGG: mpt:Mpe_A2336 hypothetical protein; hypothetical protein	1841576..1842778	Alicycliphilus denitrificans K601	10482780
YP_004387647.1	CDS	Alide2_1743	NC_015422.1	1842830	1844047	R	KEGG: rsl:RPSI07_1104 hypothethical protein; hypothetical protein	complement(1842830..1844047)	Alicycliphilus denitrificans K601	10482781
YP_004387648.1	CDS	Alide2_1744	NC_015422.1	1844284	1845072	D	KEGG: mpt:Mpe_A2339 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4669; PFAM: Integrating conjugative element protein, PFL4669; integrating conjugative element protein	1844284..1845072	Alicycliphilus denitrificans K601	10482782
YP_004387649.1	CDS	Alide2_1745	NC_015422.1	1845069	1845617	D	KEGG: tmz:Tmz1t_0992 hypothetical protein; hypothetical protein	1845069..1845617	Alicycliphilus denitrificans K601	10482783
YP_004387650.1	CDS	Alide2_1746	NC_015422.1	1845614	1845997	D	PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; single-strand binding protein/Primosomal replication protein n	1845614..1845997	Alicycliphilus denitrificans K601	10482784
YP_004387651.1	CDS	Alide2_1747	NC_015422.1	1846291	1848306	D	SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase III	1846291..1848306	Alicycliphilus denitrificans K601	10482785
YP_004387652.1	CDS	Alide2_1748	NC_015422.1	1849086	1849322	D	KEGG: tmz:Tmz1t_0989 hypothetical protein; hypothetical protein	1849086..1849322	Alicycliphilus denitrificans K601	10482786
YP_004387653.1	CDS	Alide2_1749	NC_015422.1	1849348	1849740	D	KEGG: ajs:Ajs_2230 hypothetical protein; hypothetical protein	1849348..1849740	Alicycliphilus denitrificans K601	10482787
YP_004387654.1	CDS	Alide2_1750	NC_015422.1	1849991	1850707	D	KEGG: ajs:Ajs_2229 hypothetical protein; hypothetical protein	1849991..1850707	Alicycliphilus denitrificans K601	10482788
YP_004387655.1	CDS	Alide2_1751	NC_015422.1	1850998	1851798	D	KEGG: tmz:Tmz1t_0980 hypothetical protein; hypothetical protein	1850998..1851798	Alicycliphilus denitrificans K601	10482789
YP_004387656.1	CDS	Alide2_1752	NC_015422.1	1851865	1852227	D	KEGG: tmz:Tmz1t_0979 hypothetical protein; hypothetical protein	1851865..1852227	Alicycliphilus denitrificans K601	10482790
YP_004387657.1	CDS	Alide2_1753	NC_015422.1	1852572	1853123	D	KEGG: mpt:Mpe_A2362 hypothetical protein; hypothetical protein	1852572..1853123	Alicycliphilus denitrificans K601	10482791
YP_004387658.1	CDS	Alide2_1754	NC_015422.1	1853178	1853789	D	KEGG: mpt:Mpe_A2363 hypothetical protein; hypothetical protein	1853178..1853789	Alicycliphilus denitrificans K601	10482792
YP_004387659.1	CDS	Alide2_1755	NC_015422.1	1853878	1854243	D	KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein	1853878..1854243	Alicycliphilus denitrificans K601	10482793
YP_004387660.1	CDS	Alide2_1756	NC_015422.1	1854328	1854978	D	KEGG: tmz:Tmz1t_0975 hypothetical protein; hypothetical protein	1854328..1854978	Alicycliphilus denitrificans K601	10482794
YP_004387661.1	CDS	Alide2_1757	NC_015422.1	1855044	1856153	D	KEGG: tmz:Tmz1t_0974 hypothetical protein; hypothetical protein	1855044..1856153	Alicycliphilus denitrificans K601	10482795
YP_004387662.1	CDS	Alide2_1758	NC_015422.1	1856255	1856560	D	KEGG: ajs:Ajs_2221 hypothetical protein; hypothetical protein	1856255..1856560	Alicycliphilus denitrificans K601	10482796
YP_004387663.1	CDS	Alide2_1759	NC_015422.1	1856661	1858931	D	SMART: DEAD-like helicase, N-terminal; KEGG: tmz:Tmz1t_0972 DEAD-like helicase; DEAD-like helicase	1856661..1858931	Alicycliphilus denitrificans K601	10482797
YP_004387664.1	CDS	Alide2_1761	NC_015422.1	1859238	1860182	D	PFAM: Chromate resistance exported protein; KEGG: har:HEAR0891 putative chromate resistance protein; chromate resistance exported protein	1859238..1860182	Alicycliphilus denitrificans K601	10482799
YP_004387665.1	CDS	Alide2_1762	NC_015422.1	1860236	1861411	D	KEGG: sfu:Sfum_0092 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter	1860236..1861411	Alicycliphilus denitrificans K601	10482800
YP_004387666.1	CDS	Alide2_1763	NC_015422.1	1861471	1862064	D	PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: rme:Rmet_6201 manganese and iron superoxide dismutase; Manganese/iron superoxide dismutase	1861471..1862064	Alicycliphilus denitrificans K601	10482801
YP_004387667.1	CDS	Alide2_1764	NC_015422.1	1862139	1863044	R	PFAM: Integrase, catalytic core; KEGG: xom:XOO_1208 transposase; integrase catalytic subunit	complement(1862139..1863044)	Alicycliphilus denitrificans K601	10482802
YP_004387668.1	CDS	Alide2_1765	NC_015422.1	1863041	1863364	R	PFAM: Transposase IS3/IS911family; KEGG: azl:AZL_f00580 transposase; transposase IS3/IS911 family protein	complement(1863041..1863364)	Alicycliphilus denitrificans K601	10482803
YP_004387669.1	CDS	Alide2_1766	NC_015422.1	1863505	1864407	D	PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein; hypothetical protein	1863505..1864407	Alicycliphilus denitrificans K601	10482804
YP_004387670.1	CDS	Alide2_1767	NC_015422.1	1864509	1864964	D	PFAM: Chromate resistance exported protein; KEGG: bph:Bphy_5141 ChrB protein; chromate resistance exported protein	1864509..1864964	Alicycliphilus denitrificans K601	10482805
YP_004387671.1	CDS	Alide2_1768	NC_015422.1	1864964	1866178	D	PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_6018 major facilitator superfamily MFS_1; major facilitator superfamily protein	1864964..1866178	Alicycliphilus denitrificans K601	10482806
YP_004387672.1	CDS	Alide2_1769	NC_015422.1	1866286	1866969	D	KEGG: gbm:Gbem_2672 winged-helix transcriptional response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	1866286..1866969	Alicycliphilus denitrificans K601	10482807
YP_004387673.1	CDS	Alide2_1770	NC_015422.1	1866966	1868420	D	TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: gbm:Gbem_2673 HAMP domain-containing sensor histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase	1866966..1868420	Alicycliphilus denitrificans K601	10482808
YP_004387674.1	CDS	Alide2_1771	NC_015422.1	1868417	1869505	D	PFAM: NHL repeat; KEGG: phe:Phep_1359 NHL repeat containing protein; NHL repeat containing protein	1868417..1869505	Alicycliphilus denitrificans K601	10482809
YP_004387675.1	CDS	Alide2_1772	NC_015422.1	1869543	1869809	D	KEGG: nwa:Nwat_1254 hypothetical protein; hypothetical protein	1869543..1869809	Alicycliphilus denitrificans K601	10482810
YP_004387676.1	CDS	Alide2_1773	NC_015422.1	1869806	1870522	D	KEGG: mno:Mnod_2229 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	1869806..1870522	Alicycliphilus denitrificans K601	10482811
YP_004387677.1	CDS	Alide2_1774	NC_015422.1	1870689	1871975	D	KEGG: bvi:Bcep1808_7485 hypothetical protein; hypothetical protein	1870689..1871975	Alicycliphilus denitrificans K601	10482812
YP_004387678.1	CDS	Alide2_1775	NC_015422.1	1871972	1872679	D	KEGG: mno:Mnod_2227 hypothetical protein; hypothetical protein	1871972..1872679	Alicycliphilus denitrificans K601	10482813
YP_004387679.1	CDS	Alide2_1776	NC_015422.1	1872692	1873531	D	KEGG: bvi:Bcep1808_7486 hypothetical protein; hypothetical protein	1872692..1873531	Alicycliphilus denitrificans K601	10482814
YP_004387680.1	CDS	Alide2_1778	NC_015422.1	1874184	1874744	D	TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: tmz:Tmz1t_0968 hypothetical protein; integrating conjugative element protein PilL	1874184..1874744	Alicycliphilus denitrificans K601	10482816
YP_004387681.1	CDS	Alide2_1779	NC_015422.1	1874741	1875388	D	KEGG: mpt:Mpe_A2376 hypothetical protein; hypothetical protein	1874741..1875388	Alicycliphilus denitrificans K601	10482817
YP_004387682.1	CDS	Alide2_1780	NC_015422.1	1875398	1876117	D	TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: ajs:Ajs_2211 putative secreted protein; integrating conjugative element protein	1875398..1876117	Alicycliphilus denitrificans K601	10482818
YP_004387683.1	CDS	Alide2_1781	NC_015422.1	1876102	1876722	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: mpt:Mpe_A2378 hypothetical protein; lytic transglycosylase catalytic subunit	1876102..1876722	Alicycliphilus denitrificans K601	10482819
YP_004387684.1	CDS	Alide2_1782	NC_015422.1	1876719	1877252	D	TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: mpt:Mpe_A2379 hypothetical protein; integrating conjugative element protein	1876719..1877252	Alicycliphilus denitrificans K601	10482820
YP_004387685.1	CDS	Alide2_1783	NC_015422.1	1877261	1879417	D	KEGG: tmz:Tmz1t_0963 hypothetical protein; manually curated; TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; conjugative coupling factor TraD	1877261..1879417	Alicycliphilus denitrificans K601	10482821
YP_004387686.1	CDS	Alide2_1784	NC_015422.1	1879414	1880163	D	TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: mpt:Mpe_A2381 hypothetical protein; integrating conjugative element membrane protein	1879414..1880163	Alicycliphilus denitrificans K601	10482822
YP_004387687.1	CDS	Alide2_1785	NC_015422.1	1880209	1882836	R	KEGG: cli:Clim_0127 hypothetical protein; hypothetical protein	complement(1880209..1882836)	Alicycliphilus denitrificans K601	10482823
YP_004387688.1	CDS	Alide2_1786	NC_015422.1	1882947	1885685	R	PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: eba:ebA2417 hypothetical protein; type III restriction protein res subunit	complement(1882947..1885685)	Alicycliphilus denitrificans K601	10482824
YP_004387689.1	CDS	Alide2_1787	NC_015422.1	1885685	1887391	R	PFAM: DNA methylase N-4/N-6; KEGG: bpm:BURPS1710b_3656 adenine specific DNA methylase Mod; DNA methylase N-4/N-6 domain-containing protein	complement(1885685..1887391)	Alicycliphilus denitrificans K601	10482825
YP_004387690.1	CDS	Alide2_1788	NC_015422.1	1887402	1889192	R	PFAM: Abortive phage infection; KEGG: pph:Ppha_0341 hypothetical protein; abortive phage infection protein	complement(1887402..1889192)	Alicycliphilus denitrificans K601	10482826
YP_004387691.1	CDS	Alide2_1789	NC_015422.1	1889192	1891390	R	PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; KEGG: alv:Alvin_2786 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8 and S53 subtilisin kexin sedolisin	complement(1889192..1891390)	Alicycliphilus denitrificans K601	10482827
YP_004387692.1	CDS	Alide2_1790	NC_015422.1	1891555	1892541	R	KEGG: alv:Alvin_2785 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein	complement(1891555..1892541)	Alicycliphilus denitrificans K601	10482828
YP_004387693.1	CDS	Alide2_1791	NC_015422.1	1892622	1895501	R	manually curated; PFAM: SNF2-related; Helicase, C-terminal; KEGG: tbd:Tbd_0933 DEAD/DEAH box helicase; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SNF2-like protein	complement(1892622..1895501)	Alicycliphilus denitrificans K601	10482829
YP_004387694.1	CDS	Alide2_1792	NC_015422.1	1895560	1895760	R	KEGG: ajs:Ajs_2531 phage transcriptional regulator, AlpA; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein	complement(1895560..1895760)	Alicycliphilus denitrificans K601	10482830
YP_004387695.1	CDS	Alide2_1793	NC_015422.1	1895984	1896349	D	KEGG: tmz:Tmz1t_0956 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD; hypothetical protein	1895984..1896349	Alicycliphilus denitrificans K601	10482831
YP_004387696.1	CDS	Alide2_1794	NC_015422.1	1896346	1896585	D	TIGRFAM: Protein of unknown function DUF3262; KEGG: ajs:Ajs_2193 hypothetical protein; integrating conjugative element protein	1896346..1896585	Alicycliphilus denitrificans K601	10482832
YP_004387697.1	CDS	Alide2_1795	NC_015422.1	1896608	1896976	D	TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: tmz:Tmz1t_0954 hypothetical protein; integrating conjugative element membrane protein	1896608..1896976	Alicycliphilus denitrificans K601	10482833
YP_004387698.1	CDS	Alide2_1796	NC_015422.1	1896989	1897399	D	TIGRFAM: Protein of unknown function DUF3487; KEGG: ajs:Ajs_2191 hypothetical protein; conjugative transfer region protein	1896989..1897399	Alicycliphilus denitrificans K601	10482834
YP_004387699.1	CDS	Alide2_1797	NC_015422.1	1897396	1898088	D	TIGRFAM: Protein of unknown function DUF2895; KEGG: mpt:Mpe_A2390 hypothetical protein; integrating conjugative element protein	1897396..1898088	Alicycliphilus denitrificans K601	10482835
YP_004387700.1	CDS	Alide2_1798	NC_015422.1	1898085	1898999	D	TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: ajs:Ajs_2189 hypothetical protein; integrating conjugative element protein	1898085..1898999	Alicycliphilus denitrificans K601	10482836
YP_004387701.1	CDS	Alide2_1799	NC_015422.1	1898989	1900422	D	TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: mpt:Mpe_A2392 hypothetical protein; integrating conjugative element protein	1898989..1900422	Alicycliphilus denitrificans K601	10482837
YP_004387702.1	CDS	Alide2_1800	NC_015422.1	1900403	1900837	D	TIGRFAM: Conjugative transfer region lipoprotein; KEGG: mpt:Mpe_A2393 hypothetical protein; conjugative transfer region lipoprotein	1900403..1900837	Alicycliphilus denitrificans K601	10482838
YP_004387703.1	CDS	Alide2_1801	NC_015422.1	1900837	1903725	D	TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: tmz:Tmz1t_0948 hypothetical protein; conjugative transfer ATPase	1900837..1903725	Alicycliphilus denitrificans K601	10482839
YP_004387704.1	CDS	Alide2_1802	NC_015422.1	1903739	1904482	D	KEGG: tmz:Tmz1t_0947 hypothetical protein; hypothetical protein	1903739..1904482	Alicycliphilus denitrificans K601	10482840
YP_004387705.1	CDS	Alide2_1803	NC_015422.1	1904678	1905172	D	KEGG: ajs:Ajs_2184 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC	1904678..1905172	Alicycliphilus denitrificans K601	10482841
YP_004387706.1	CDS	Alide2_1804	NC_015422.1	1905395	1905871	D	KEGG: app:CAP2UW1_2945 hypothetical protein; hypothetical protein	1905395..1905871	Alicycliphilus denitrificans K601	10482842
YP_004387707.1	CDS	Alide2_1805	NC_015422.1	1905868	1908831	D	KEGG: app:CAP2UW1_2946 N-6 DNA methylase; N-6 DNA methylase	1905868..1908831	Alicycliphilus denitrificans K601	10482843
YP_004387708.1	CDS	Alide2_1806	NC_015422.1	1908981	1909499	D	KEGG: app:CAP2UW1_2947 hypothetical protein; hypothetical protein	1908981..1909499	Alicycliphilus denitrificans K601	10482844
YP_004387709.1	CDS	Alide2_1807	NC_015422.1	1909643	1910086	D	KEGG: ajs:Ajs_2183 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709; integrating conjugative element protein	1909643..1910086	Alicycliphilus denitrificans K601	10482845
YP_004387710.1	CDS	Alide2_1808	NC_015422.1	1910083	1911027	D	KEGG: eba:ebA2511 hypothetical protein; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710; integrating conjugative element protein	1910083..1911027	Alicycliphilus denitrificans K601	10482846
YP_004387711.1	CDS	Alide2_1809	NC_015422.1	1911038	1912444	D	TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: ajs:Ajs_2181 hypothetical protein; integrating conjugative element protein	1911038..1912444	Alicycliphilus denitrificans K601	10482847
YP_004387712.1	CDS	Alide2_1810	NC_015422.1	1912441	1912794	D	KEGG: ajs:Ajs_2180 hypothetical protein; hypothetical protein	1912441..1912794	Alicycliphilus denitrificans K601	10482848
YP_004387713.1	CDS	Alide2_1811	NC_015422.1	1912810	1914333	D	KEGG: ajs:Ajs_2179 hypothetical protein; hypothetical protein	1912810..1914333	Alicycliphilus denitrificans K601	10482849
YP_004387714.1	CDS	Alide2_1812	NC_015422.1	1914350	1914718	R	PFAM: Protein of unknown function DUF3742; KEGG: ajs:Ajs_2178 hypothetical protein; hypothetical protein	complement(1914350..1914718)	Alicycliphilus denitrificans K601	10482850
YP_004387715.1	CDS	Alide2_1813	NC_015422.1	1914948	1915706	D	KEGG: mpt:Mpe_A2403 hypothetical protein; hypothetical protein	1914948..1915706	Alicycliphilus denitrificans K601	10482851
YP_004387716.1	CDS	Alide2_1814	NC_015422.1	1915699	1916619	D	PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_2176 hypothetical protein; hypothetical protein	1915699..1916619	Alicycliphilus denitrificans K601	10482852
YP_004387717.1	CDS	Alide2_1815	NC_015422.1	1916822	1918666	D	KEGG: ajs:Ajs_2175 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal; integrating conjugative element relaxase	1916822..1918666	Alicycliphilus denitrificans K601	10482853
YP_004387718.1	CDS	Alide2_1816	NC_015422.1	1918693	1918992	R	KEGG: mpt:Mpe_A2406 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(1918693..1918992)	Alicycliphilus denitrificans K601	10482854
YP_004387719.1	CDS	Alide2_1817	NC_015422.1	1919098	1919724	D	PFAM: LysR, substrate-binding; KEGG: mpt:Mpe_A2407 transcriptional regulator; LysR family transcriptional regulator	1919098..1919724	Alicycliphilus denitrificans K601	10482855
YP_004387720.1	CDS	Alide2_1819	NC_015422.1	1919906	1920985	R	SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; TIGRFAM: Peptidase A8, signal peptidase II; KEGG: kpu:pK2044_00535 lipoprotein signal peptidase; HAMAP: Peptidase A8, signal peptidase II; PFAM: Peptidase A8, signal peptidase II; Phosphatidic acid phosphatase type 2/haloperoxidase; lipoprotein signal peptidase	complement(1919906..1920985)	Alicycliphilus denitrificans K601	10482857
YP_004387721.1	CDS	Alide2_1820	NC_015422.1	1920982	1923384	R	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: tin:Tint_3215 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	complement(1920982..1923384)	Alicycliphilus denitrificans K601	10482858
YP_004387722.1	CDS	Alide2_1821	NC_015422.1	1923466	1923909	D	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: tgr:Tgr7_2809 putative transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	1923466..1923909	Alicycliphilus denitrificans K601	10482859
YP_004387723.1	CDS	Alide2_1822	NC_015422.1	1923945	1925798	R	PFAM: Integrase, catalytic core, phage; KEGG: mpt:Mpe_A2408 integrase (int); integrase family protein	complement(1923945..1925798)	Alicycliphilus denitrificans K601	10482860
YP_004387724.1	CDS	Alide2_1823	NC_015422.1	1926278	1926889	D	KEGG: pna:Pnap_4574 hypothetical protein; hypothetical protein	1926278..1926889	Alicycliphilus denitrificans K601	10482861
YP_004387725.1	CDS	Alide2_1824	NC_015422.1	1926985	1928460	D	KEGG: xfa:XF2733 hypothetical protein; hypothetical protein	1926985..1928460	Alicycliphilus denitrificans K601	10482862
YP_004387726.1	CDS	Alide2_1825	NC_015422.1	1928492	1929166	D	KEGG: tmz:Tmz1t_0049 hypothetical protein; hypothetical protein	1928492..1929166	Alicycliphilus denitrificans K601	10482863
YP_004387727.1	CDS	Alide2_1826	NC_015422.1	1929163	1932540	D	KEGG: tmz:Tmz1t_0051 conserved hypothetical cytosolic protein; cytosolic protein	1929163..1932540	Alicycliphilus denitrificans K601	10482864
YP_004387728.1	CDS	Alide2_1827	NC_015422.1	1932537	1933742	D	KEGG: xfm:Xfasm12_2281 hypothetical protein; hypothetical protein	1932537..1933742	Alicycliphilus denitrificans K601	10482865
YP_004387729.1	CDS	Alide2_1830	NC_015422.1	1935553	1935846	D	PFAM: Transposase IS3/IS911family; KEGG: rpi:Rpic_2066 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	1935553..1935846	Alicycliphilus denitrificans K601	10482868
YP_004387730.1	CDS	Alide2_1831	NC_015422.1	1935843	1936472	D	PFAM: Integrase, catalytic core; KEGG: rde:RD1_3452 transposase, putative; integrase catalytic subunit	1935843..1936472	Alicycliphilus denitrificans K601	10482869
YP_004387731.1	CDS	Alide2_1832	NC_015422.1	1937148	1937780	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_5293 TetR family transcriptional regulator; TetR family transcriptional regulator	complement(1937148..1937780)	Alicycliphilus denitrificans K601	10482870
YP_004387732.1	CDS	Alide2_1833	NC_015422.1	1938014	1939180	D	KEGG: axy:AXYL_02788 acyl-CoA dehydrogenase 1; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	1938014..1939180	Alicycliphilus denitrificans K601	10482871
YP_004387733.1	CDS	Alide2_1834	NC_015422.1	1939221	1940537	D	KEGG: reu:Reut_A3087 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	1939221..1940537	Alicycliphilus denitrificans K601	10482872
YP_004387734.1	CDS	Alide2_1835	NC_015422.1	1940534	1941676	D	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: pol:Bpro_5276 acyl-CoA dehydrogenase-like; acyl-CoA dehydrogenase domain-containing protein	1940534..1941676	Alicycliphilus denitrificans K601	10482873
YP_004387735.1	CDS	Alide2_1836	NC_015422.1	1941690	1942847	D	KEGG: pol:Bpro_5277 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; butyryl-CoA dehydrogenase	1941690..1942847	Alicycliphilus denitrificans K601	10482874
YP_004387736.1	CDS	Alide2_1837	NC_015422.1	1942967	1943359	R	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: eba:ebB200 putative thiolase subunit; hypothetical protein	complement(1942967..1943359)	Alicycliphilus denitrificans K601	10482875
YP_004387737.1	CDS	Alide2_1838	NC_015422.1	1943364	1944530	R	KEGG: reh:H16_A1297 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase	complement(1943364..1944530)	Alicycliphilus denitrificans K601	10482876
YP_004387738.1	CDS	Alide2_1839	NC_015422.1	1944635	1945567	R	KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1944635..1945567)	Alicycliphilus denitrificans K601	10482877
YP_004387739.1	CDS	Alide2_1840	NC_015422.1	1945716	1946474	D	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: eba:ebA5300 putative dehydrogenase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase	1945716..1946474	Alicycliphilus denitrificans K601	10482878
YP_004387740.1	CDS	Alide2_1841	NC_015422.1	1946575	1948692	D	KEGG: bpt:Bpet1210 acetyl-CoA synthetase; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein	1946575..1948692	Alicycliphilus denitrificans K601	10482879
YP_004387741.1	CDS	Alide2_1843	NC_015422.1	1949903	1950721	D	PFAM: Crotonase, core; KEGG: dac:Daci_0194 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	1949903..1950721	Alicycliphilus denitrificans K601	10482881
YP_004387742.1	CDS	Alide2_1844	NC_015422.1	1950735	1953017	D	KEGG: vap:Vapar_1314 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Isovaleryl-CoA dehydrogenase	1950735..1953017	Alicycliphilus denitrificans K601	10482882
YP_004387743.1	CDS	Alide2_1845	NC_015422.1	1953082	1954038	R	KEGG: reu:Reut_B4356 hypothetical protein; hypothetical protein	complement(1953082..1954038)	Alicycliphilus denitrificans K601	10482883
YP_004387744.1	CDS	Alide2_1847	NC_015422.1	1955011	1955982	R	KEGG: rme:Rmet_3671 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	complement(1955011..1955982)	Alicycliphilus denitrificans K601	10482885
YP_004387745.1	CDS	Alide2_1848	NC_015422.1	1956027	1957001	R	KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065; hypothetical protein	complement(1956027..1957001)	Alicycliphilus denitrificans K601	10482886
YP_004387746.1	CDS	Alide2_1849	NC_015422.1	1957199	1958056	R	KEGG: pol:Bpro_5282 MaoC-like dehydratase; PFAM: MaoC-like dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	complement(1957199..1958056)	Alicycliphilus denitrificans K601	10482887
YP_004387747.1	CDS	Alide2_1850	NC_015422.1	1958046	1958363	R	hypothetical protein	complement(1958046..1958363)	Alicycliphilus denitrificans K601	10482888
YP_004387748.1	CDS	Alide2_1851	NC_015422.1	1958445	1959302	R	KEGG: bbr:BB4339 hypothetical protein; hypothetical protein	complement(1958445..1959302)	Alicycliphilus denitrificans K601	10482889
YP_004387749.1	CDS	Alide2_1852	NC_015422.1	1959514	1959939	R	KEGG: pol:Bpro_5250 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; regulatory protein IclR	complement(1959514..1959939)	Alicycliphilus denitrificans K601	10482890
YP_004387750.1	CDS	Alide2_1853	NC_015422.1	1960337	1961089	D	KEGG: azo:azo2492 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta	1960337..1961089	Alicycliphilus denitrificans K601	10482891
YP_004387751.1	CDS	Alide2_1854	NC_015422.1	1961086	1962027	D	KEGG: tmz:Tmz1t_0422 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein subunit alpha	1961086..1962027	Alicycliphilus denitrificans K601	10482892
YP_004387752.1	CDS	Alide2_1855	NC_015422.1	1962062	1962832	D	PFAM: Crotonase, core; KEGG: bxe:Bxe_C0269 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	1962062..1962832	Alicycliphilus denitrificans K601	10482893
YP_004387753.1	CDS	Alide2_1856	NC_015422.1	1962952	1963911	D	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bph:Bphy_0157 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD	1962952..1963911	Alicycliphilus denitrificans K601	10482894
YP_004387754.1	CDS	Alide2_1857	NC_015422.1	1964047	1965024	D	KEGG: vap:Vapar_0801 hypothetical protein; hypothetical protein	1964047..1965024	Alicycliphilus denitrificans K601	10482895
YP_004387755.1	CDS	Alide2_1858	NC_015422.1	1965148	1966050	R	PFAM: Alpha/beta hydrolase fold-1; KEGG: pla:Plav_2055 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein	complement(1965148..1966050)	Alicycliphilus denitrificans K601	10482896
YP_004387756.1	CDS	Alide2_1859	NC_015422.1	1966073	1967245	R	manually curated; KEGG: mau:Micau_2811 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; alpha-methylacyl-CoA racemase	complement(1966073..1967245)	Alicycliphilus denitrificans K601	10482897
YP_004387757.1	CDS	Alide2_1860	NC_015422.1	1967236	1968531	R	KEGG: rpa:RPA4552 4-hydroxybutyrate-CoA transferase/hydrolase; 4-hydroxybutyrate-CoA transferase/hydrolase	complement(1967236..1968531)	Alicycliphilus denitrificans K601	10482898
YP_004387758.1	CDS	Alide2_1861	NC_015422.1	1968554	1970008	R	PFAM: MmgE/PrpD; KEGG: bur:Bcep18194_C7308 MmgE/PrpD; MmgE/PrpD family protein	complement(1968554..1970008)	Alicycliphilus denitrificans K601	10482899
YP_004387759.1	CDS	Alide2_1862	NC_015422.1	1970044	1971018	R	KEGG: bbr:BB3950 hypothetical protein; hypothetical protein	complement(1970044..1971018)	Alicycliphilus denitrificans K601	10482900
YP_004387760.1	CDS	Alide2_1863	NC_015422.1	1971089	1972354	R	KEGG: bbr:BB4584 hypothetical protein; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(1971089..1972354)	Alicycliphilus denitrificans K601	10482901
YP_004387761.1	CDS	Alide2_1864	NC_015422.1	1972351	1973490	R	KEGG: bur:Bcep18194_C7492 acyl-CoA dehydrogenase-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	complement(1972351..1973490)	Alicycliphilus denitrificans K601	10482902
YP_004387762.1	CDS	Alide2_1865	NC_015422.1	1973518	1973964	R	PFAM: MaoC-like dehydratase; KEGG: bur:Bcep18194_C7491 MaoC-like dehydratase; MaoC domain-containing protein dehydratase	complement(1973518..1973964)	Alicycliphilus denitrificans K601	10482903
YP_004387763.1	CDS	Alide2_1866	NC_015422.1	1974158	1974652	D	KEGG: bpt:Bpet1156 hypothetical protein; hypothetical protein	1974158..1974652	Alicycliphilus denitrificans K601	10482904
YP_004387764.1	CDS	Alide2_1867	NC_015422.1	1974694	1975665	D	KEGG: bpt:Bpet1157 putative secreted protein; hypothetical protein	1974694..1975665	Alicycliphilus denitrificans K601	10482905
YP_004387765.1	CDS	Alide2_1868	NC_015422.1	1975662	1976480	D	PFAM: Crotonase, core; KEGG: bpt:Bpet1158 putative enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	1975662..1976480	Alicycliphilus denitrificans K601	10482906
YP_004387766.1	CDS	Alide2_1869	NC_015422.1	1976477	1977313	D	PFAM: Crotonase, core; KEGG: axy:AXYL_06657 enoyl-CoA hydratase/isomerase family protein 35; enoyl-CoA hydratase/isomerase	1976477..1977313	Alicycliphilus denitrificans K601	10482907
YP_004387767.1	CDS	Alide2_1870	NC_015422.1	1977310	1978122	R	KEGG: axy:AXYL_06658 transcriptional regulator family protein 40; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1977310..1978122)	Alicycliphilus denitrificans K601	10482908
YP_004387768.1	CDS	Alide2_1871	NC_015422.1	1978122	1978943	R	KEGG: axy:AXYL_06659 transcriptional regulator family protein 41; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(1978122..1978943)	Alicycliphilus denitrificans K601	10482909
YP_004387769.1	CDS	Alide2_1872	NC_015422.1	1978995	1980938	R	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: bpt:Bpet1154 putative biotin carboxylase subunit of propionyl-CoA carboxylase; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase, pyruvate carboxylase	complement(1978995..1980938)	Alicycliphilus denitrificans K601	10482910
YP_004387770.1	CDS	Alide2_1873	NC_015422.1	1980941	1982545	R	KEGG: bpt:Bpet1153 putative propionyl-CoA carboxylase beta subunit; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase	complement(1980941..1982545)	Alicycliphilus denitrificans K601	10482911
YP_004387771.1	CDS	Alide2_1874	NC_015422.1	1982548	1982859	R	KEGG: bpt:Bpet1152 hypothetical protein; hypothetical protein	complement(1982548..1982859)	Alicycliphilus denitrificans K601	10482912
YP_004387772.1	CDS	Alide2_1875	NC_015422.1	1982870	1984246	R	PFAM: Protein of unknown function DUF1446; KEGG: bpt:Bpet1151 hypothetical protein; hypothetical protein	complement(1982870..1984246)	Alicycliphilus denitrificans K601	10482913
YP_004387773.1	CDS	Alide2_1876	NC_015422.1	1984420	1984806	D	KEGG: reh:H16_B1907 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	1984420..1984806	Alicycliphilus denitrificans K601	10482914
YP_004387774.1	CDS	Alide2_1879	NC_015422.1	1986223	1987026	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(1986223..1987026)	Alicycliphilus denitrificans K601	10482917
YP_004387775.1	CDS	Alide2_1880	NC_015422.1	1987016	1988542	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(1987016..1988542)	Alicycliphilus denitrificans K601	10482918
YP_004387776.1	CDS	Alide2_1882	NC_015422.1	1988887	1989426	D	KEGG: tmz:Tmz1t_0992 hypothetical protein; hypothetical protein	1988887..1989426	Alicycliphilus denitrificans K601	10482920
YP_004387777.1	CDS	Alide2_1883	NC_015422.1	1989423	1989806	D	PFAM: Primosome PriB/single-strand DNA-binding; KEGG: tmz:Tmz1t_0991 single-stranded DNA-binding protein; single-strand binding protein/Primosomal replication protein n	1989423..1989806	Alicycliphilus denitrificans K601	10482921
YP_004387778.1	CDS	Alide2_1884	NC_015422.1	1990101	1992131	D	SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: mpt:Mpe_A2342 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; DNA topoisomerase III	1990101..1992131	Alicycliphilus denitrificans K601	10482922
YP_004387779.1	CDS	Alide2_1885	NC_015422.1	1992657	1993487	R	KEGG: mpt:Mpe_A2343 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; GCN5-related N-acetyltransferase (GNAT) domain; arsenate reductase	complement(1992657..1993487)	Alicycliphilus denitrificans K601	10482923
YP_004387780.1	CDS	Alide2_1886	NC_015422.1	1993484	1994575	R	KEGG: mpt:Mpe_A2344 ACR3 permease; TIGRFAM: Arsenical-resistance protein ACR3; PFAM: Bile acid:sodium symporter; arsenical-resistance protein	complement(1993484..1994575)	Alicycliphilus denitrificans K601	10482924
YP_004387781.1	CDS	Alide2_1887	NC_015422.1	1994585	1995082	R	KEGG: mpt:Mpe_A2345 arsenate reductase, putative; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase	complement(1994585..1995082)	Alicycliphilus denitrificans K601	10482925
YP_004387782.1	CDS	Alide2_1888	NC_015422.1	1995095	1995559	R	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A2346 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase	complement(1995095..1995559)	Alicycliphilus denitrificans K601	10482926
YP_004387783.1	CDS	Alide2_1889	NC_015422.1	1995572	1995901	R	SMART: HTH transcriptional regulator, ArsR; KEGG: mpt:Mpe_A2347 ArsR family transcriptional regulator; regulatory protein ArsR	complement(1995572..1995901)	Alicycliphilus denitrificans K601	10482927
YP_004387784.1	CDS	Alide2_1890	NC_015422.1	1996153	1996479	D	KEGG: rpf:Rpic12D_0655 hypothetical protein; hypothetical protein	1996153..1996479	Alicycliphilus denitrificans K601	10482928
YP_004387785.1	CDS	Alide2_1891	NC_015422.1	1996505	1996897	D	KEGG: rpf:Rpic12D_0656 hypothetical protein; hypothetical protein	1996505..1996897	Alicycliphilus denitrificans K601	10482929
YP_004387786.1	CDS	Alide2_1892	NC_015422.1	1996999	1997463	D	KEGG: tau:Tola_2412 hypothetical protein; hypothetical protein	1996999..1997463	Alicycliphilus denitrificans K601	10482930
YP_004387787.1	CDS	Alide2_1893	NC_015422.1	1997544	1998260	D	KEGG: rpf:Rpic12D_0658 hypothetical protein; hypothetical protein	1997544..1998260	Alicycliphilus denitrificans K601	10482931
YP_004387788.1	CDS	Alide2_1894	NC_015422.1	1998554	1999351	D	KEGG: rpf:Rpic12D_0659 hypothetical protein; hypothetical protein	1998554..1999351	Alicycliphilus denitrificans K601	10482932
YP_004387789.1	CDS	Alide2_1895	NC_015422.1	1999426	1999791	D	KEGG: ajs:Ajs_2227 hypothetical protein; hypothetical protein	1999426..1999791	Alicycliphilus denitrificans K601	10482933
YP_004387790.1	CDS	Alide2_1896	NC_015422.1	1999934	2000776	D	KEGG: rpf:Rpic12D_0661 hypothetical protein; hypothetical protein	1999934..2000776	Alicycliphilus denitrificans K601	10482934
YP_004387791.1	CDS	Alide2_1897	NC_015422.1	2001095	2001649	D	KEGG: rpf:Rpic12D_0662 hypothetical protein; hypothetical protein	2001095..2001649	Alicycliphilus denitrificans K601	10482935
YP_004387792.1	CDS	Alide2_1898	NC_015422.1	2001770	2002399	D	KEGG: rpf:Rpic12D_0663 hypothetical protein; hypothetical protein	2001770..2002399	Alicycliphilus denitrificans K601	10482936
YP_004387793.1	CDS	Alide2_1899	NC_015422.1	2002501	2002893	D	KEGG: mpt:Mpe_A2364 hypothetical protein; hypothetical protein	2002501..2002893	Alicycliphilus denitrificans K601	10482937
YP_004387794.1	CDS	Alide2_1900	NC_015422.1	2002901	2003170	D	KEGG: tgr:Tgr7_2834 hypothetical protein; hypothetical protein	2002901..2003170	Alicycliphilus denitrificans K601	10482938
YP_004387795.1	CDS	Alide2_1901	NC_015422.1	2003308	2004135	D	PFAM: Protein of unknown function DUF932; KEGG: rpf:Rpic12D_0664 protein of unknown function DUF932; hypothetical protein	2003308..2004135	Alicycliphilus denitrificans K601	10482939
YP_004387796.1	CDS	Alide2_1902	NC_015422.1	2004636	2005292	D	KEGG: rpf:Rpic12D_0665 hypothetical protein; hypothetical protein	2004636..2005292	Alicycliphilus denitrificans K601	10482940
YP_004387797.1	CDS	Alide2_1903	NC_015422.1	2005360	2006475	D	KEGG: rpf:Rpic12D_0666 hypothetical protein; hypothetical protein	2005360..2006475	Alicycliphilus denitrificans K601	10482941
YP_004387798.1	CDS	Alide2_1904	NC_015422.1	2006587	2006892	D	KEGG: tmz:Tmz1t_0973 hypothetical protein; hypothetical protein	2006587..2006892	Alicycliphilus denitrificans K601	10482942
YP_004387799.1	CDS	Alide2_1905	NC_015422.1	2006995	2009277	D	SMART: DEAD-like helicase, N-terminal; KEGG: rpf:Rpic12D_0667 DEAD-like helicase; DEAD-like helicase	2006995..2009277	Alicycliphilus denitrificans K601	10482943
YP_004387800.1	CDS	Alide2_1906	NC_015422.1	2009437	2010048	D	TIGRFAM: Integrating conjugative element protein PilL, PFGI-1; KEGG: rpf:Rpic12D_0668 hypothetical protein; integrating conjugative element protein PilL	2009437..2010048	Alicycliphilus denitrificans K601	10482944
YP_004387801.1	CDS	Alide2_1907	NC_015422.1	2010045	2010689	D	KEGG: rpf:Rpic12D_0669 hypothetical protein; hypothetical protein	2010045..2010689	Alicycliphilus denitrificans K601	10482945
YP_004387802.1	CDS	Alide2_1908	NC_015422.1	2010699	2011430	D	TIGRFAM: Integrating conjugative element protein, PFL4693; KEGG: rpf:Rpic12D_0670 putative secreted protein; integrating conjugative element protein	2010699..2011430	Alicycliphilus denitrificans K601	10482946
YP_004387803.1	CDS	Alide2_1909	NC_015422.1	2011415	2012014	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: rpf:Rpic12D_0671 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit	2011415..2012014	Alicycliphilus denitrificans K601	10482947
YP_004387804.1	CDS	Alide2_1910	NC_015422.1	2012011	2012577	D	TIGRFAM: Integrating conjugative element protein, PFL4695; KEGG: rpf:Rpic12D_0672 hypothetical protein; integrating conjugative element protein	2012011..2012577	Alicycliphilus denitrificans K601	10482948
YP_004387805.1	CDS	Alide2_1911	NC_015422.1	2012598	2014757	D	TIGRFAM: Conjugative coupling factor TraG/TraD; Conjugative coupling factor TraG/TraD, PFGI-1; KEGG: rpf:Rpic12D_0673 hypothetical protein; conjugative coupling factor TraD	2012598..2014757	Alicycliphilus denitrificans K601	10482949
YP_004387806.1	CDS	Alide2_1912	NC_015422.1	2014754	2015503	D	TIGRFAM: Integrating conjugative element protein, PFL4697, membrane; KEGG: rpf:Rpic12D_0674 hypothetical protein; integrating conjugative element membrane protein	2014754..2015503	Alicycliphilus denitrificans K601	10482950
YP_004387807.1	CDS	Alide2_1913	NC_015422.1	2015617	2016024	D	KEGG: rpf:Rpic12D_0675 hypothetical protein; TIGRFAM: Uncharacterised protein family, RAQPRD; PFAM: Uncharacterised protein family, RAQPRD; hypothetical protein	2015617..2016024	Alicycliphilus denitrificans K601	10482951
YP_004387808.1	CDS	Alide2_1914	NC_015422.1	2016021	2016260	D	TIGRFAM: Protein of unknown function DUF3262; KEGG: rpf:Rpic12D_0676 hypothetical protein; integrating conjugative element protein	2016021..2016260	Alicycliphilus denitrificans K601	10482952
YP_004387809.1	CDS	Alide2_1915	NC_015422.1	2016282	2016659	D	TIGRFAM: Integrating conjugative element protein PFL4702; KEGG: rpf:Rpic12D_0677 hypothetical protein; integrating conjugative element membrane protein	2016282..2016659	Alicycliphilus denitrificans K601	10482953
YP_004387810.1	CDS	Alide2_1916	NC_015422.1	2016672	2017100	D	TIGRFAM: Protein of unknown function DUF3487; KEGG: rpf:Rpic12D_0678 hypothetical protein; conjugative transfer region protein	2016672..2017100	Alicycliphilus denitrificans K601	10482954
YP_004387811.1	CDS	Alide2_1917	NC_015422.1	2017097	2017789	D	TIGRFAM: Protein of unknown function DUF2895; KEGG: rpf:Rpic12D_0679 hypothetical protein; integrating conjugative element protein	2017097..2017789	Alicycliphilus denitrificans K601	10482955
YP_004387812.1	CDS	Alide2_1918	NC_015422.1	2017786	2018715	D	TIGRFAM: Integrating conjugative element protein, PFL4704; KEGG: rpf:Rpic12D_0680 hypothetical protein; integrating conjugative element protein	2017786..2018715	Alicycliphilus denitrificans K601	10482956
YP_004387813.1	CDS	Alide2_1919	NC_015422.1	2018705	2020174	D	TIGRFAM: Integrating conjugative element protein, PFL4705; KEGG: rpf:Rpic12D_0681 hypothetical protein; integrating conjugative element protein	2018705..2020174	Alicycliphilus denitrificans K601	10482957
YP_004387814.1	CDS	Alide2_1920	NC_015422.1	2020155	2020589	D	TIGRFAM: Conjugative transfer region lipoprotein; KEGG: rpf:Rpic12D_0682 hypothetical protein; conjugative transfer region lipoprotein	2020155..2020589	Alicycliphilus denitrificans K601	10482958
YP_004387815.1	CDS	Alide2_1921	NC_015422.1	2020589	2023471	D	TIGRFAM: Conjugative transfer ATPase, PFL4706; KEGG: rpf:Rpic12D_0683 hypothetical protein; conjugative transfer ATPase	2020589..2023471	Alicycliphilus denitrificans K601	10482959
YP_004387816.1	CDS	Alide2_1922	NC_015422.1	2023482	2024237	D	PFAM: DSBA-like thioredoxin domain; KEGG: rpf:Rpic12D_0684 DsbA oxidoreductase; DSBA oxidoreductase	2023482..2024237	Alicycliphilus denitrificans K601	10482960
YP_004387817.1	CDS	Alide2_1923	NC_015422.1	2024431	2025018	D	KEGG: net:Neut_0078 hypothetical protein; hypothetical protein	2024431..2025018	Alicycliphilus denitrificans K601	10482961
YP_004387818.1	CDS	Alide2_1924	NC_015422.1	2025193	2025801	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: maq:Maqu_1250 TetR family transcriptional regulator; TetR family transcriptional regulator	2025193..2025801	Alicycliphilus denitrificans K601	10482962
YP_004387819.1	CDS	Alide2_1925	NC_015422.1	2025798	2026949	D	KEGG: ppd:Ppro_3851 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	2025798..2026949	Alicycliphilus denitrificans K601	10482963
YP_004387820.1	CDS	Alide2_1926	NC_015422.1	2026946	2028151	D	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: ppd:Ppro_3850 hypothetical protein; hypothetical protein	2026946..2028151	Alicycliphilus denitrificans K601	10482964
YP_004387821.1	CDS	Alide2_1927	NC_015422.1	2028153	2028863	D	PFAM: ABC transporter-like; KEGG: ppd:Ppro_3849 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	2028153..2028863	Alicycliphilus denitrificans K601	10482965
YP_004387822.1	CDS	Alide2_1928	NC_015422.1	2028892	2029365	D	KEGG: ppd:Ppro_3848 hypothetical protein; hypothetical protein	2028892..2029365	Alicycliphilus denitrificans K601	10482966
YP_004387823.1	CDS	Alide2_1929	NC_015422.1	2029352	2030839	D	KEGG: maq:Maqu_1255 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	2029352..2030839	Alicycliphilus denitrificans K601	10482967
YP_004387824.1	CDS	Alide2_1930	NC_015422.1	2030999	2032681	D	PFAM: Integrase, catalytic core; Transposase-like, Mu, C-terminal; KEGG: bxe:Bxe_C1173 integrase TniA; integrase catalytic subunit	2030999..2032681	Alicycliphilus denitrificans K601	10482968
YP_004387825.1	CDS	Alide2_1931	NC_015422.1	2032684	2033592	D	KEGG: bxe:Bxe_C1174 transposition protein TniB; PFAM: Bacterial TniB; SMART: ATPase, AAA+ type, core; TniB family protein	2032684..2033592	Alicycliphilus denitrificans K601	10482969
YP_004387826.1	CDS	Alide2_1932	NC_015422.1	2033589	2034806	D	KEGG: bxe:Bxe_C1175 transposition protein TniQ; manually curated; PFAM: TniQ; TniQ family protein	2033589..2034806	Alicycliphilus denitrificans K601	10482970
YP_004387827.1	CDS	Alide2_1934	NC_015422.1	2035040	2035489	D	KEGG: shn:Shewana3_1247 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02391; PFAM: Conserved hypothetical protein CHP02391; hypothetical protein	2035040..2035489	Alicycliphilus denitrificans K601	10482972
YP_004387828.1	CDS	Alide2_1935	NC_015422.1	2035433	2036503	R	PFAM: Aminoglycoside phosphotransferase; KEGG: bxe:Bxe_C1178 hypothetical protein; aminoglycoside phosphotransferase	complement(2035433..2036503)	Alicycliphilus denitrificans K601	10482973
YP_004387829.1	CDS	Alide2_1936	NC_015422.1	2036519	2038321	R	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4258 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; Xenobiotic-transporting ATPase	complement(2036519..2038321)	Alicycliphilus denitrificans K601	10482974
YP_004387830.1	CDS	Alide2_1937	NC_015422.1	2038318	2040144	R	PFAM: ABC transporter-like; ABC transporter, transmembrane domain; KEGG: art:Arth_4257 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; Xenobiotic-transporting ATPase	complement(2038318..2040144)	Alicycliphilus denitrificans K601	10482975
YP_004387831.1	CDS	Alide2_1938	NC_015422.1	2040191	2040550	R	KEGG: bvi:Bcep1808_7475 hypothetical protein; hypothetical protein	complement(2040191..2040550)	Alicycliphilus denitrificans K601	10482976
YP_004387832.1	CDS	Alide2_1939	NC_015422.1	2040610	2041512	R	PFAM: Uncharacterised protein family, LppY/LpqO; KEGG: pop:POPTR_594759 hypothetical protein; hypothetical protein	complement(2040610..2041512)	Alicycliphilus denitrificans K601	10482977
YP_004387833.1	CDS	Alide2_1940	NC_015422.1	2041585	2041965	R	KEGG: bxe:Bxe_C1203 hypothetical protein; hypothetical protein	complement(2041585..2041965)	Alicycliphilus denitrificans K601	10482978
YP_004387834.1	CDS	Alide2_1941	NC_015422.1	2041990	2042448	R	PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1204 hypothetical protein; chromate resistance exported protein	complement(2041990..2042448)	Alicycliphilus denitrificans K601	10482979
YP_004387835.1	CDS	Alide2_1942	NC_015422.1	2042453	2043361	R	KEGG: bxe:Bxe_C1205 putative superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; SMART: Rhodanese-like; Manganese/iron superoxide dismutase	complement(2042453..2043361)	Alicycliphilus denitrificans K601	10482980
YP_004387836.1	CDS	Alide2_1943	NC_015422.1	2043423	2044619	R	KEGG: bxe:Bxe_C1206 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter	complement(2043423..2044619)	Alicycliphilus denitrificans K601	10482981
YP_004387837.1	CDS	Alide2_1944	NC_015422.1	2044676	2045638	R	PFAM: Chromate resistance exported protein; KEGG: bxe:Bxe_C1207 putative chromate resistance protein; chromate resistance exported protein	complement(2044676..2045638)	Alicycliphilus denitrificans K601	10482982
YP_004387838.1	CDS	Alide2_1945	NC_015422.1	2046800	2047393	D	KEGG: bxe:Bxe_C1209 putative resolvase; PFAM: Resolvase, N-terminal; Protein of unknown function DUF932; SMART: Resolvase, N-terminal; resolvase domain-containing protein	2046800..2047393	Alicycliphilus denitrificans K601	10482983
YP_004387839.1	CDS	Alide2_1946	NC_015422.1	2047432	2047752	R	manually curated; KEGG: bxe:Bxe_C1210 transposon modulator protein; transposon modulator protein	complement(2047432..2047752)	Alicycliphilus denitrificans K601	10482984
YP_004387840.1	CDS	Alide2_1947	NC_015422.1	2047768	2048004	R	PFAM: MerE; KEGG: bxe:Bxe_C1211 putative mercury resistance protein; MerE family protein	complement(2047768..2048004)	Alicycliphilus denitrificans K601	10482985
YP_004387841.1	CDS	Alide2_1948	NC_015422.1	2048001	2048366	R	TIGRFAM: Mercuric resistence transcriptional repressor protein MerD; PFAM: HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1212 transcriptional regulator MerD; SMART: HTH transcriptional regulator, MerR; mercuric resistance transcriptional repressor protein MerD	complement(2048001..2048366)	Alicycliphilus denitrificans K601	10482986
YP_004387842.1	CDS	Alide2_1949	NC_015422.1	2048384	2050069	R	TIGRFAM: Mercury reductase, MerA; KEGG: bxe:Bxe_C1213 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase	complement(2048384..2050069)	Alicycliphilus denitrificans K601	10482987
YP_004387843.1	CDS	Alide2_1950	NC_015422.1	2050108	2050533	R	KEGG: mms:mma_1750 putative mercury transport protein MerC; putative mercury transport protein MerC	complement(2050108..2050533)	Alicycliphilus denitrificans K601	10482988
YP_004387844.1	CDS	Alide2_1951	NC_015422.1	2050561	2050836	R	KEGG: mms:mma_1751 mercuric transport periplasmic binding protein; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component	complement(2050561..2050836)	Alicycliphilus denitrificans K601	10482989
YP_004387845.1	CDS	Alide2_1952	NC_015422.1	2050850	2051200	R	PFAM: Mercuric transport protein MerT; KEGG: bxe:Bxe_C1216 putative mercuric transport protein; Mercuric transport protein MerT	complement(2050850..2051200)	Alicycliphilus denitrificans K601	10482990
YP_004387846.1	CDS	Alide2_1953	NC_015422.1	2051272	2051706	D	TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: bxe:Bxe_C1217 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	2051272..2051706	Alicycliphilus denitrificans K601	10482991
YP_004387847.1	CDS	Alide2_1956	NC_015422.1	2055403	2055849	D	KEGG: rpf:Rpic12D_0686 protein of unknown function DUF1525; TIGRFAM: Integrating conjugative element protein, PFL4709; PFAM: Integrating conjugative element protein, PFL4709; integrating conjugative element protein	2055403..2055849	Alicycliphilus denitrificans K601	10482994
YP_004387848.1	CDS	Alide2_1957	NC_015422.1	2055846	2056796	D	KEGG: rpf:Rpic12D_0687 protein of unknown function DUF1527; TIGRFAM: Integrating conjugative element protein, PFL4710; PFAM: Integrating conjugative element protein, PFL4710; integrating conjugative element protein	2055846..2056796	Alicycliphilus denitrificans K601	10482995
YP_004387849.1	CDS	Alide2_1958	NC_015422.1	2056807	2058207	D	TIGRFAM: Integrating conjugative element protein, PFL4711; KEGG: rpf:Rpic12D_0688 hypothetical protein; integrating conjugative element protein	2056807..2058207	Alicycliphilus denitrificans K601	10482996
YP_004387850.1	CDS	Alide2_1959	NC_015422.1	2058207	2058566	D	KEGG: rpf:Rpic12D_0689 hypothetical protein; hypothetical protein	2058207..2058566	Alicycliphilus denitrificans K601	10482997
YP_004387851.1	CDS	Alide2_1960	NC_015422.1	2058590	2060107	D	KEGG: rpf:Rpic12D_0690 hypothetical protein; hypothetical protein	2058590..2060107	Alicycliphilus denitrificans K601	10482998
YP_004387852.1	CDS	Alide2_1961	NC_015422.1	2060108	2060479	R	KEGG: rpf:Rpic12D_0691 hypothetical protein; hypothetical protein	complement(2060108..2060479)	Alicycliphilus denitrificans K601	10482999
YP_004387853.1	CDS	Alide2_1962	NC_015422.1	2060602	2061066	R	KEGG: dac:Daci_4188 hypothetical protein; hypothetical protein	complement(2060602..2061066)	Alicycliphilus denitrificans K601	10483000
YP_004387854.1	CDS	Alide2_1963	NC_015422.1	2061066	2061383	R	TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: dac:Daci_4189 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator	complement(2061066..2061383)	Alicycliphilus denitrificans K601	10483001
YP_004387855.1	CDS	Alide2_1964	NC_015422.1	2061697	2063562	D	KEGG: rpf:Rpic12D_0694 relaxase; TIGRFAM: Integrating conjugative element relaxase, PFGI-1 class; PFAM: Uncharacterised protein family, helicase/relaxase, putative; Domain of unknown function DUF1528, C-terminal; integrating conjugative element relaxase	2061697..2063562	Alicycliphilus denitrificans K601	10483002
YP_004387856.1	CDS	Alide2_1965	NC_015422.1	2063589	2063894	R	KEGG: rpf:Rpic12D_0695 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(2063589..2063894)	Alicycliphilus denitrificans K601	10483003
YP_004387857.1	CDS	Alide2_1966	NC_015422.1	2064013	2064633	D	PFAM: LysR, substrate-binding; KEGG: rpf:Rpic12D_0696 transcriptional regulator, LysR family; LysR family transcriptional regulator	2064013..2064633	Alicycliphilus denitrificans K601	10483004
YP_004387858.1	CDS	Alide2_1967	NC_015422.1	2064646	2066568	R	PFAM: Integrase, catalytic core, phage; KEGG: dac:Daci_4139 integrase family protein; integrase family protein	complement(2064646..2066568)	Alicycliphilus denitrificans K601	10483005
YP_004387859.1	CDS	Alide2_1968	NC_015422.1	2066998	2067540	R	KEGG: ajs:Ajs_1664 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator	complement(2066998..2067540)	Alicycliphilus denitrificans K601	10483007
YP_004387860.1	CDS	Alide2_1969	NC_015422.1	2068159	2068419	D	KEGG: dia:Dtpsy_2037 hypothetical protein; hypothetical protein	2068159..2068419	Alicycliphilus denitrificans K601	10483008
YP_004387861.1	CDS	Alide2_1970	NC_015422.1	2068431	2069306	R	TIGRFAM: Phosphatidylserine decarboxylase; HAMAP: Phosphatidylserine decarboxylase; KEGG: dia:Dtpsy_2036 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase proenzyme	complement(2068431..2069306)	Alicycliphilus denitrificans K601	10483009
YP_004387862.1	CDS	Alide2_1971	NC_015422.1	2069514	2070692	D	manually curated; PFAM: Cystathionine beta-synthase, core; HPP; KEGG: ajs:Ajs_1669 CBS domain-containing protein; SMART: Cystathionine beta-synthase, core; CBS domain-containing membrane protein	2069514..2070692	Alicycliphilus denitrificans K601	10483010
YP_004387863.1	CDS	Alide2_1972	NC_015422.1	2070940	2071200	D	KEGG: dia:Dtpsy_2034 translation initiation factor IF-1; TIGRFAM: Translation initiation factor IF-1; PFAM: RNA-binding domain, S1, IF1 type; translation initiation factor IF-1	2070940..2071200	Alicycliphilus denitrificans K601	10483011
YP_004387864.1	CDS	Alide2_1973	NC_015422.1	2071571	2072620	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: ajs:Ajs_4119 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	2071571..2072620	Alicycliphilus denitrificans K601	10483013
YP_004387865.1	CDS	Alide2_1974	NC_015422.1	2072626	2073399	D	PFAM: Protein of unknown function DUF1624; KEGG: ajs:Ajs_1672 hypothetical protein; hypothetical protein	2072626..2073399	Alicycliphilus denitrificans K601	10483014
YP_004387866.1	CDS	Alide2_1975	NC_015422.1	2073411	2073713	R	TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1390 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit beta	complement(2073411..2073713)	Alicycliphilus denitrificans K601	10483015
YP_004387867.1	CDS	Alide2_1976	NC_015422.1	2073833	2075518	R	TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1391 30S ribosomal protein S1; SMART: RNA-binding domain, S1; 50S ribosomal protein S1	complement(2073833..2075518)	Alicycliphilus denitrificans K601	10483016
YP_004387868.1	CDS	Alide2_1977	NC_015422.1	2075699	2077723	R	PFAM: Enolpyruvate transferase domain; Cytidylate kinase domain; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; Cytidylate kinase; HAMAP: Cytidylate kinase; 3-phosphoshikimate 1-carboxyvinyltransferase; KEGG: dia:Dtpsy_1392 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Cytidylate kinase	complement(2075699..2077723)	Alicycliphilus denitrificans K601	10483017
YP_004387869.1	CDS	Alide2_1978	NC_015422.1	2077723	2078607	R	KEGG: dia:Dtpsy_1393 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; Prephenate dehydrogenase	complement(2077723..2078607)	Alicycliphilus denitrificans K601	10483018
YP_004387870.1	CDS	Alide2_1979	NC_015422.1	2078618	2079718	R	TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; KEGG: dia:Dtpsy_1394 chorismate mutase; SMART: Chorismate mutase; chorismate mutase	complement(2078618..2079718)	Alicycliphilus denitrificans K601	10483019
YP_004387871.1	CDS	Alide2_1980	NC_015422.1	2079837	2080946	R	PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: Phosphoserine aminotransferase, subgroup; HAMAP: Phosphoserine aminotransferase; KEGG: dia:Dtpsy_1395 phosphoserine aminotransferase; phosphoserine aminotransferase	complement(2079837..2080946)	Alicycliphilus denitrificans K601	10483020
YP_004387872.1	CDS	Alide2_1981	NC_015422.1	2081013	2083703	R	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA gyrase, subunit A; KEGG: ajs:Ajs_2464 DNA gyrase subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; DNA gyrase subunit A	complement(2081013..2083703)	Alicycliphilus denitrificans K601	10483021
YP_004387873.1	CDS	Alide2_1982	NC_015422.1	2083880	2084539	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1397 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	2083880..2084539	Alicycliphilus denitrificans K601	10483022
YP_004387874.1	CDS	Alide2_1983	NC_015422.1	2084619	2085332	D	TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; KEGG: dia:Dtpsy_1398 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase	2084619..2085332	Alicycliphilus denitrificans K601	10483023
YP_004387875.1	CDS	Alide2_1984	NC_015422.1	2085329	2086006	D	TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; KEGG: ajs:Ajs_2461 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase	2085329..2086006	Alicycliphilus denitrificans K601	10483024
YP_004387876.1	CDS	Alide2_1985	NC_015422.1	2086706	2087590	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bvi:Bcep1808_7210 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(2086706..2087590)	Alicycliphilus denitrificans K601	10483026
YP_004387877.1	CDS	Alide2_1986	NC_015422.1	2087587	2088597	R	KEGG: bvi:Bcep1808_7212 phosphonate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphonate dehydrogenase	complement(2087587..2088597)	Alicycliphilus denitrificans K601	10483027
YP_004387878.1	CDS	Alide2_1987	NC_015422.1	2088622	2089419	R	KEGG: mms:mma_3042 phosphonate ABC-type transport system permease protein; TIGRFAM: Phosphonate uptake transporter; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter permease	complement(2088622..2089419)	Alicycliphilus denitrificans K601	10483028
YP_004387879.1	CDS	Alide2_1988	NC_015422.1	2089432	2090292	R	TIGRFAM: Phosphonate-binding periplasmic protein; KEGG: mms:mma_3041 phosphonate ABC-type transport system substrate-binding protein; phosphonate ABC transporter substrate-binding protein	complement(2089432..2090292)	Alicycliphilus denitrificans K601	10483029
YP_004387880.1	CDS	Alide2_1989	NC_015422.1	2090316	2091113	R	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, phosphonate import, PhnC; KEGG: mms:mma_3040 phosphonate ABC-type transport system ATP-binding protein; PFAM: ABC transporter-like; phosphonate ABC transporter ATPase	complement(2090316..2091113)	Alicycliphilus denitrificans K601	10483030
YP_004387881.1	CDS	Alide2_1990	NC_015422.1	2091367	2092086	D	PFAM: Domain of unknown function DUF88; KEGG: cvi:CV_0373 hypothetical protein; hypothetical protein	2091367..2092086	Alicycliphilus denitrificans K601	10483031
YP_004387882.1	CDS	Alide2_1991	NC_015422.1	2092184	2092663	R	KEGG: rsl:RPSI07_0201 putative bacteriophage-related protein; putative bacteriophage-like protein	complement(2092184..2092663)	Alicycliphilus denitrificans K601	10483032
YP_004387883.1	CDS	Alide2_1992	NC_015422.1	2092660	2093031	R	KEGG: rsl:RPSI07_0202 putative bacteriophage-related protein; putative bacteriophage-like protein	complement(2092660..2093031)	Alicycliphilus denitrificans K601	10483033
YP_004387884.1	CDS	Alide2_1993	NC_015422.1	2093031	2094410	R	KEGG: nde:NIDE0070 putative site-specific recombinase, resolvase family (phage related); PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal; resolvase domain-containing protein	complement(2093031..2094410)	Alicycliphilus denitrificans K601	10483034
YP_004387885.1	CDS	Alide2_1994	NC_015422.1	2094407	2094856	R	KEGG: mfa:Mfla_1156 hypothetical protein; hypothetical protein	complement(2094407..2094856)	Alicycliphilus denitrificans K601	10483035
YP_004387886.1	CDS	Alide2_1995	NC_015422.1	2094856	2095047	R	KEGG: mfa:Mfla_1157 hypothetical protein; hypothetical protein	complement(2094856..2095047)	Alicycliphilus denitrificans K601	10483036
YP_004387887.1	CDS	Alide2_1996	NC_015422.1	2095228	2095506	D	KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	2095228..2095506	Alicycliphilus denitrificans K601	10483037
YP_004387888.1	CDS	Alide2_1997	NC_015422.1	2095507	2096319	D	KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein	2095507..2096319	Alicycliphilus denitrificans K601	10483038
YP_004387889.1	CDS	Alide2_1998	NC_015422.1	2096420	2097844	D	KEGG: nde:NIDE0077 hypothetical protein; hypothetical protein	2096420..2097844	Alicycliphilus denitrificans K601	10483039
YP_004387890.1	CDS	Alide2_1999	NC_015422.1	2097856	2098794	D	KEGG: nde:NIDE0078 hypothetical protein; hypothetical protein	2097856..2098794	Alicycliphilus denitrificans K601	10483040
YP_004387891.1	CDS	Alide2_2000	NC_015422.1	2098880	2099137	D	KEGG: mca:MCA2640 hypothetical protein; hypothetical protein	2098880..2099137	Alicycliphilus denitrificans K601	10483041
YP_004387892.1	CDS	Alide2_2001	NC_015422.1	2099149	2099631	D	KEGG: mms:mma_2689 hypothetical protein; hypothetical protein	2099149..2099631	Alicycliphilus denitrificans K601	10483042
YP_004387893.1	CDS	Alide2_2002	NC_015422.1	2099628	2100476	D	KEGG: nde:NIDE0081 hypothetical protein; hypothetical protein	2099628..2100476	Alicycliphilus denitrificans K601	10483043
YP_004387894.1	CDS	Alide2_2003	NC_015422.1	2100482	2101105	D	KEGG: dia:Dtpsy_3225 hypothetical protein; hypothetical protein	2100482..2101105	Alicycliphilus denitrificans K601	10483044
YP_004387895.1	CDS	Alide2_2004	NC_015422.1	2101117	2101971	D	PFAM: Uncharacterised protein domain P63C; KEGG: nde:NIDE0083 hypothetical protein; hypothetical protein	2101117..2101971	Alicycliphilus denitrificans K601	10483045
YP_004387896.1	CDS	Alide2_2005	NC_015422.1	2101968	2102468	D	KEGG: nde:NIDE0084 hypothetical protein; hypothetical protein	2101968..2102468	Alicycliphilus denitrificans K601	10483046
YP_004387897.1	CDS	Alide2_2006	NC_015422.1	2102465	2103199	D	KEGG: dia:Dtpsy_3223 hypothetical protein; hypothetical protein	2102465..2103199	Alicycliphilus denitrificans K601	10483047
YP_004387898.1	CDS	Alide2_2007	NC_015422.1	2103196	2103441	D	KEGG: nde:NIDE0086 hypothetical protein; hypothetical protein	2103196..2103441	Alicycliphilus denitrificans K601	10483048
YP_004387899.1	CDS	Alide2_2008	NC_015422.1	2103438	2105738	D	TIGRFAM: DNA primase, phage/plasmid; PFAM: Phage/plasmid primase, P4, C-terminal; KEGG: dia:Dtpsy_3221 hypothetical protein; SMART: Phage/plasmid primase, P4, C-terminal; phage/plasmid primase, P4 family	2103438..2105738	Alicycliphilus denitrificans K601	10483049
YP_004387900.1	CDS	Alide2_2009	NC_015422.1	2105880	2106356	D	KEGG: dia:Dtpsy_3220 hypothetical protein; hypothetical protein	2105880..2106356	Alicycliphilus denitrificans K601	10483050
YP_004387901.1	CDS	Alide2_2010	NC_015422.1	2106358	2106561	D	KEGG: mms:mma_2698 hypothetical protein; hypothetical protein	2106358..2106561	Alicycliphilus denitrificans K601	10483051
YP_004387902.1	CDS	Alide2_2011	NC_015422.1	2106554	2106970	D	KEGG: sml:Smlt1883 hypothetical protein; hypothetical protein	2106554..2106970	Alicycliphilus denitrificans K601	10483052
YP_004387903.1	CDS	Alide2_2012	NC_015422.1	2107316	2108731	D	KEGG: dia:Dtpsy_3217 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; DNA methylase N-4/N-6 domain-containing protein	2107316..2108731	Alicycliphilus denitrificans K601	10483053
YP_004387904.1	CDS	Alide2_2013	NC_015422.1	2108728	2109990	D	KEGG: dia:Dtpsy_3216 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6; ParB-like nuclease; SMART: ParB-like nuclease; DNA methylase N-4/N-6 domain-containing protein	2108728..2109990	Alicycliphilus denitrificans K601	10483054
YP_004387905.1	CDS	Alide2_2014	NC_015422.1	2109954	2110322	R	KEGG: mms:mma_2759 hypothetical protein; hypothetical protein	complement(2109954..2110322)	Alicycliphilus denitrificans K601	10483055
YP_004387906.1	CDS	Alide2_2015	NC_015422.1	2110420	2110941	R	KEGG: mms:mma_2762 hypothetical protein; hypothetical protein	complement(2110420..2110941)	Alicycliphilus denitrificans K601	10483056
YP_004387907.1	CDS	Alide2_2016	NC_015422.1	2111037	2111243	R	KEGG: dia:Dtpsy_3211 hypothetical protein; hypothetical protein	complement(2111037..2111243)	Alicycliphilus denitrificans K601	10483057
YP_004387908.1	CDS	Alide2_2017	NC_015422.1	2111350	2111895	D	KEGG: sml:Smlt1874 hypothetical protein; hypothetical protein	2111350..2111895	Alicycliphilus denitrificans K601	10483058
YP_004387909.1	CDS	Alide2_2018	NC_015422.1	2111895	2113853	D	PFAM: Phage terminase GpA; KEGG: dia:Dtpsy_3209 terminase GpA; terminase GpA	2111895..2113853	Alicycliphilus denitrificans K601	10483059
YP_004387910.1	CDS	Alide2_2019	NC_015422.1	2113883	2114374	D	KEGG: mms:mma_2706 hypothetical protein; hypothetical protein	2113883..2114374	Alicycliphilus denitrificans K601	10483060
YP_004387911.1	CDS	Alide2_2020	NC_015422.1	2114374	2114766	D	KEGG: mms:mma_2767 hypothetical protein; hypothetical protein	2114374..2114766	Alicycliphilus denitrificans K601	10483061
YP_004387912.1	CDS	Alide2_2021	NC_015422.1	2114766	2114987	D	KEGG: rsl:RPSI07_0240 hypothetical protein; hypothetical protein	2114766..2114987	Alicycliphilus denitrificans K601	10483062
YP_004387913.1	CDS	Alide2_2022	NC_015422.1	2114989	2116503	D	manually curated; TIGRFAM: Phage portal protein, lambda; KEGG: dia:Dtpsy_3207 phage portal protein, lambda family; PFAM: Phage portal protein, lambda; phage portal protein, lambda family	2114989..2116503	Alicycliphilus denitrificans K601	10483063
YP_004387914.1	CDS	Alide2_2023	NC_015422.1	2116537	2117778	D	PFAM: Peptidase S49; KEGG: dia:Dtpsy_3206 peptidase S49; peptidase S49	2116537..2117778	Alicycliphilus denitrificans K601	10483064
YP_004387915.1	CDS	Alide2_2024	NC_015422.1	2117780	2118157	D	KEGG: dia:Dtpsy_3205 hypothetical protein; hypothetical protein	2117780..2118157	Alicycliphilus denitrificans K601	10483065
YP_004387916.1	CDS	Alide2_2025	NC_015422.1	2118160	2119164	D	KEGG: dia:Dtpsy_3204 hypothetical protein; hypothetical protein	2118160..2119164	Alicycliphilus denitrificans K601	10483066
YP_004387917.1	CDS	Alide2_2026	NC_015422.1	2119164	2119466	D	KEGG: dia:Dtpsy_3203 hypothetical protein; hypothetical protein	2119164..2119466	Alicycliphilus denitrificans K601	10483067
YP_004387918.1	CDS	Alide2_2027	NC_015422.1	2119471	2119917	D	KEGG: dia:Dtpsy_3202 signal peptide protein; hypothetical protein	2119471..2119917	Alicycliphilus denitrificans K601	10483068
YP_004387919.1	CDS	Alide2_2028	NC_015422.1	2119923	2120144	D	KEGG: dia:Dtpsy_3201 hypothetical protein; hypothetical protein	2119923..2120144	Alicycliphilus denitrificans K601	10483069
YP_004387920.1	CDS	Alide2_2029	NC_015422.1	2120141	2120893	D	KEGG: dia:Dtpsy_3200 hypothetical protein; hypothetical protein	2120141..2120893	Alicycliphilus denitrificans K601	10483070
YP_004387921.1	CDS	Alide2_2030	NC_015422.1	2120905	2121303	D	KEGG: dia:Dtpsy_3199 hypothetical protein; hypothetical protein	2120905..2121303	Alicycliphilus denitrificans K601	10483071
YP_004387922.1	CDS	Alide2_2031	NC_015422.1	2121300	2121509	D	manually curated; KEGG: rso:RSc0865 hypothetical protein; hypothetical protein	2121300..2121509	Alicycliphilus denitrificans K601	10483072
YP_004387923.1	CDS	Alide2_2032	NC_015422.1	2121484	2122128	D	KEGG: dia:Dtpsy_3198 hypothetical protein; hypothetical protein	2121484..2122128	Alicycliphilus denitrificans K601	10483073
YP_004387924.1	CDS	Alide2_2033	NC_015422.1	2122130	2126167	D	TIGRFAM: Tape measure domain; KEGG: dia:Dtpsy_3197 phage tape measure protein; phage tape measure protein	2122130..2126167	Alicycliphilus denitrificans K601	10483074
YP_004387925.1	CDS	Alide2_2034	NC_015422.1	2126204	2126614	D	KEGG: dia:Dtpsy_3196 hypothetical protein; hypothetical protein	2126204..2126614	Alicycliphilus denitrificans K601	10483075
YP_004387926.1	CDS	Alide2_2035	NC_015422.1	2126614	2130222	D	KEGG: dia:Dtpsy_3195 hypothetical protein; hypothetical protein	2126614..2130222	Alicycliphilus denitrificans K601	10483076
YP_004387927.1	CDS	Alide2_2036	NC_015422.1	2130270	2131535	D	KEGG: dia:Dtpsy_3194 hypothetical protein; hypothetical protein	2130270..2131535	Alicycliphilus denitrificans K601	10483077
YP_004387928.1	CDS	Alide2_2037	NC_015422.1	2131539	2132624	D	KEGG: mca:MCA2674 hypothetical protein; hypothetical protein	2131539..2132624	Alicycliphilus denitrificans K601	10483078
YP_004387929.1	CDS	Alide2_2038	NC_015422.1	2132621	2133016	D	KEGG: mca:MCA2675 hypothetical protein; hypothetical protein	2132621..2133016	Alicycliphilus denitrificans K601	10483079
YP_004387930.1	CDS	Alide2_2039	NC_015422.1	2133020	2135047	D	KEGG: dia:Dtpsy_3191 hypothetical protein; hypothetical protein	2133020..2135047	Alicycliphilus denitrificans K601	10483080
YP_004387931.1	CDS	Alide2_2040	NC_015422.1	2135040	2135261	D	KEGG: dia:Dtpsy_3190 hypothetical protein; hypothetical protein	2135040..2135261	Alicycliphilus denitrificans K601	10483081
YP_004387932.1	CDS	Alide2_2041	NC_015422.1	2135328	2135633	D	KEGG: mms:mma_2786 hypothetical protein; hypothetical protein	2135328..2135633	Alicycliphilus denitrificans K601	10483082
YP_004387933.1	CDS	Alide2_2042	NC_015422.1	2135630	2135857	D	KEGG: nde:NIDE0123 hypothetical protein; hypothetical protein	2135630..2135857	Alicycliphilus denitrificans K601	10483083
YP_004387934.1	CDS	Alide2_2043	NC_015422.1	2135854	2136354	D	PFAM: Glycoside hydrolase, family 24; KEGG: sml:Smlt1851 putative glycosidase; glycoside hydrolase family 24	2135854..2136354	Alicycliphilus denitrificans K601	10483084
YP_004387935.1	CDS	Alide2_2044	NC_015422.1	2136351	2136848	D	KEGG: nde:NIDE0125 hypothetical protein; hypothetical protein	2136351..2136848	Alicycliphilus denitrificans K601	10483085
YP_004387936.1	CDS	Alide2_2045	NC_015422.1	2136957	2137247	D	KEGG: rso:RSc3214 hypothetical protein; hypothetical protein	2136957..2137247	Alicycliphilus denitrificans K601	10483086
YP_004387937.1	CDS	Alide2_2046	NC_015422.1	2137252	2138199	R	PFAM: Protein of unknown function DUF511; KEGG: dno:DNO_0218 hypothetical protein; hypothetical protein	complement(2137252..2138199)	Alicycliphilus denitrificans K601	10483087
YP_004387938.1	CDS	Alide2_2047	NC_015422.1	2138212	2138988	R	KEGG: bav:BAV0365 hypothetical protein; hypothetical protein	complement(2138212..2138988)	Alicycliphilus denitrificans K601	10483088
YP_004387939.1	CDS	Alide2_2048	NC_015422.1	2138993	2139532	R	manually curated; KEGG: pol:Bpro_1539 hypothetical protein; hypothetical protein	complement(2138993..2139532)	Alicycliphilus denitrificans K601	10483089
YP_004387940.1	CDS	Alide2_2049	NC_015422.1	2139540	2142611	R	KEGG: xfm:Xfasm12_2267 type I restriction-modification system endonuclease; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; Restriction endonuclease, type I, EcoRI, R subunit/type III	complement(2139540..2142611)	Alicycliphilus denitrificans K601	10483090
YP_004387941.1	CDS	Alide2_2050	NC_015422.1	2142598	2144022	R	KEGG: mca:MCA0277 hypothetical protein; hypothetical protein	complement(2142598..2144022)	Alicycliphilus denitrificans K601	10483091
YP_004387942.1	CDS	Alide2_2051	NC_015422.1	2144022	2146406	R	PFAM: DNA methylase, adenine-specific; KEGG: xfn:XfasM23_2177 N-6 DNA methylase; N-6 DNA methylase	complement(2144022..2146406)	Alicycliphilus denitrificans K601	10483092
YP_004387943.1	CDS	Alide2_2052	NC_015422.1	2146418	2148136	R	PFAM: Domain of unknown function DUF262; Domain of unknown function DUF1524 RloF; KEGG: gca:Galf_1217 hypothetical protein; hypothetical protein	complement(2146418..2148136)	Alicycliphilus denitrificans K601	10483093
YP_004387944.1	CDS	Alide2_2053	NC_015422.1	2148152	2149051	R	KEGG: vei:Veis_2419 hypothetical protein; hypothetical protein	complement(2148152..2149051)	Alicycliphilus denitrificans K601	10483094
YP_004387945.1	CDS	Alide2_2054	NC_015422.1	2149260	2149664	D	PFAM: Glycoside hydrolase, family 24; KEGG: mms:mma_2788 phage-related lysozyme; glycoside hydrolase family 24	2149260..2149664	Alicycliphilus denitrificans K601	10483095
YP_004387946.1	CDS	Alide2_2055	NC_015422.1	2149746	2150900	R	KEGG: mfa:Mfla_1158 DegP2 peptidase; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap	complement(2149746..2150900)	Alicycliphilus denitrificans K601	10483096
YP_004387947.1	CDS	Alide2_2056	NC_015422.1	2150924	2151889	R	PFAM: Peptidase M48; KEGG: mfa:Mfla_1159 peptidase M48, Ste24p; peptidase M48 Ste24p	complement(2150924..2151889)	Alicycliphilus denitrificans K601	10483097
YP_004387948.1	CDS	Alide2_2057	NC_015422.1	2151897	2152367	R	KEGG: mfa:Mfla_1160 hypothetical protein; hypothetical protein	complement(2151897..2152367)	Alicycliphilus denitrificans K601	10483098
YP_004387949.1	CDS	Alide2_2058	NC_015422.1	2152443	2152883	R	TIGRFAM: Thioredoxin; KEGG: dde:Dde_3416 thioredoxin; PFAM: Thioredoxin domain; thioredoxin	complement(2152443..2152883)	Alicycliphilus denitrificans K601	10483099
YP_004387950.1	CDS	Alide2_2059	NC_015422.1	2152880	2154763	R	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dde:Dde_3415 FtsH-2 peptidase; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH	complement(2152880..2154763)	Alicycliphilus denitrificans K601	10483100
YP_004387951.1	CDS	Alide2_2060	NC_015422.1	2154791	2156221	R	KEGG: rpf:Rpic12D_0625 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase	complement(2154791..2156221)	Alicycliphilus denitrificans K601	10483101
YP_004387952.1	CDS	Alide2_2061	NC_015422.1	2156239	2159088	R	KEGG: mfa:Mfla_1170 ATPase AAA-2; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; SMART: ATPase, AAA+ type, core; ATPase AAA-2 domain-containing protein	complement(2156239..2159088)	Alicycliphilus denitrificans K601	10483102
YP_004387953.1	CDS	Alide2_2062	NC_015422.1	2159182	2159751	R	PFAM: Heat shock protein Hsp20; KEGG: rpf:Rpic12D_0629 heat shock protein HSP20; heat shock protein Hsp20	complement(2159182..2159751)	Alicycliphilus denitrificans K601	10483103
YP_004387954.1	CDS	Alide2_2063	NC_015422.1	2159784	2160065	R	manually curated; TIGRFAM: Excisionase/Xis, DNA-binding; KEGG: mfa:Mfla_1172 phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein	complement(2159784..2160065)	Alicycliphilus denitrificans K601	10483104
YP_004387955.1	CDS	Alide2_2065	NC_015422.1	2160805	2161476	R	PFAM: Protein of unknown function DUF159; KEGG: tin:Tint_2914 protein of unknown function DUF159; hypothetical protein	complement(2160805..2161476)	Alicycliphilus denitrificans K601	10483106
YP_004387956.1	CDS	Alide2_2066	NC_015422.1	2161532	2162017	D	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: tin:Tint_2913 peptidase S24/S26A/S26B, conserved region; peptidase S24/S26A/S26B	2161532..2162017	Alicycliphilus denitrificans K601	10483107
YP_004387957.1	CDS	Alide2_2067	NC_015422.1	2162017	2163303	D	KEGG: tin:Tint_2912 DNA-directed DNA polymerase; PFAM: DNA-repair protein, UmuC-like; DNA-directed DNA polymerase	2162017..2163303	Alicycliphilus denitrificans K601	10483108
YP_004387958.1	CDS	Alide2_2068	NC_015422.1	2163300	2163764	R	KEGG: mca:MCA2632 hypothetical protein; hypothetical protein	complement(2163300..2163764)	Alicycliphilus denitrificans K601	10483109
YP_004387959.1	CDS	Alide2_2069	NC_015422.1	2163761	2164147	R	KEGG: mca:MCA2633 prophage LambdaMc01, site-specific recombinase resolvase family protein, truncation; site-specific recombinase resolvase family protein, truncation	complement(2163761..2164147)	Alicycliphilus denitrificans K601	10483110
YP_004387960.1	CDS	Alide2_2070	NC_015422.1	2164144	2165523	R	KEGG: mca:MCA2634 prophage LambdaMc01, site-specific recombinase resolvase family protein; PFAM: Resolvase, N-terminal; Recombinase; SMART: Resolvase, N-terminal; resolvase domain-containing protein	complement(2164144..2165523)	Alicycliphilus denitrificans K601	10483111
YP_004387961.1	CDS	Alide2_2071	NC_015422.1	2165523	2165969	R	PFAM: Protein of unknown function DUF2924; KEGG: mca:MCA2635 hypothetical protein; hypothetical protein	complement(2165523..2165969)	Alicycliphilus denitrificans K601	10483112
YP_004387962.1	CDS	Alide2_2072	NC_015422.1	2165966	2166160	R	KEGG: mca:MCA2636 hypothetical protein; hypothetical protein	complement(2165966..2166160)	Alicycliphilus denitrificans K601	10483113
YP_004387963.1	CDS	Alide2_2073	NC_015422.1	2166340	2166618	D	KEGG: sml:Smlt1898 putative HTH transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	2166340..2166618	Alicycliphilus denitrificans K601	10483114
YP_004387964.1	CDS	Alide2_2074	NC_015422.1	2166619	2166882	D	KEGG: nde:NIDE0076 hypothetical protein; hypothetical protein	2166619..2166882	Alicycliphilus denitrificans K601	10483115
YP_004387965.1	CDS	Alide2_2076	NC_015422.1	2167055	2167378	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	2167055..2167378	Alicycliphilus denitrificans K601	10483117
YP_004387966.1	CDS	Alide2_2077	NC_015422.1	2167375	2168289	D	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	2167375..2168289	Alicycliphilus denitrificans K601	10483118
YP_004387967.1	CDS	Alide2_2078	NC_015422.1	2168352	2169278	R	PFAM: Glutaminase; TIGRFAM: Glutaminase; HAMAP: Glutaminase; KEGG: atu:Atu1859 glutaminase; glutaminase	complement(2168352..2169278)	Alicycliphilus denitrificans K601	10483119
YP_004387968.1	CDS	Alide2_2079	NC_015422.1	2169282	2170469	R	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; PFAM: Peptidase M20; Peptidase M20, dimerisation; amidohydrolase	complement(2169282..2170469)	Alicycliphilus denitrificans K601	10483120
YP_004387969.1	CDS	Alide2_2080	NC_015422.1	2170507	2171847	R	PFAM: General substrate transporter; KEGG: rme:Rmet_5758 major facilitator protein family permease; general substrate transporter	complement(2170507..2171847)	Alicycliphilus denitrificans K601	10483121
YP_004387970.1	CDS	Alide2_2081	NC_015422.1	2171974	2172876	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4525 LysR family transcriptional regulator; LysR family transcriptional regulator	2171974..2172876	Alicycliphilus denitrificans K601	10483122
YP_004387971.1	CDS	Alide2_2082	NC_015422.1	2172945	2173742	R	KEGG: sde:Sde_2785 hypothetical protein; hypothetical protein	complement(2172945..2173742)	Alicycliphilus denitrificans K601	10483123
YP_004387972.1	CDS	Alide2_2083	NC_015422.1	2173877	2174371	R	manually curated; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GNAT family acetyltransferase	complement(2173877..2174371)	Alicycliphilus denitrificans K601	10483124
YP_004387973.1	CDS	Alide2_2084	NC_015422.1	2174368	2174634	R	PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein	complement(2174368..2174634)	Alicycliphilus denitrificans K601	10483125
YP_004387974.1	CDS	Alide2_2085	NC_015422.1	2174865	2176121	R	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1692 major facilitator superfamily transporter; major facilitator superfamily protein	complement(2174865..2176121)	Alicycliphilus denitrificans K601	10483126
YP_004387975.1	CDS	Alide2_2086	NC_015422.1	2176305	2177096	D	KEGG: dia:Dtpsy_2008 gluconate 5-dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	2176305..2177096	Alicycliphilus denitrificans K601	10483127
YP_004387976.1	CDS	Alide2_2087	NC_015422.1	2177160	2177585	D	KEGG: ajs:Ajs_1696 hypothetical protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	2177160..2177585	Alicycliphilus denitrificans K601	10483128
YP_004387977.1	CDS	Alide2_2088	NC_015422.1	2177679	2178695	D	PFAM: Alcohol dehydrogenase, C-terminal; KEGG: ajs:Ajs_1697 alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase; 2-alkenal reductase	2177679..2178695	Alicycliphilus denitrificans K601	10483129
YP_004387978.1	CDS	Alide2_2089	NC_015422.1	2178772	2179695	D	KEGG: ajs:Ajs_1699 putative glutathione S-transferase-related protein; putative glutathione S-transferase-like protein	2178772..2179695	Alicycliphilus denitrificans K601	10483130
YP_004387979.1	CDS	Alide2_2090	NC_015422.1	2179775	2180368	R	PFAM: Protein of unknown function DUF1566; KEGG: dia:Dtpsy_2002 protein of unknown function DUF1566; hypothetical protein	complement(2179775..2180368)	Alicycliphilus denitrificans K601	10483131
YP_004387980.1	CDS	Alide2_2091	NC_015422.1	2180857	2182260	D	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1703 major facilitator superfamily transporter; major facilitator superfamily protein	2180857..2182260	Alicycliphilus denitrificans K601	10483132
YP_004387981.1	CDS	Alide2_2092	NC_015422.1	2182260	2183735	D	KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; deoxyribodipyrimidine photo-lyase	2182260..2183735	Alicycliphilus denitrificans K601	10483133
YP_004387982.1	CDS	Alide2_2093	NC_015422.1	2183740	2184300	R	KEGG: ajs:Ajs_1629 hypothetical protein; hypothetical protein	complement(2183740..2184300)	Alicycliphilus denitrificans K601	10483134
YP_004387983.1	CDS	Alide2_2094	NC_015422.1	2184281	2186641	R	PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; TIGRFAM: Cobalamin-independent methionine synthase; HAMAP: Cobalamin-independent methionine synthase; KEGG: ajs:Ajs_1630 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	complement(2184281..2186641)	Alicycliphilus denitrificans K601	10483135
YP_004387984.1	CDS	Alide2_2095	NC_015422.1	2186750	2187676	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1631 LysR family transcriptional regulator; LysR family transcriptional regulator	2186750..2187676	Alicycliphilus denitrificans K601	10483136
YP_004387985.1	CDS	Alide2_2096	NC_015422.1	2187792	2187959	D	hypothetical protein	2187792..2187959	Alicycliphilus denitrificans K601	10483137
YP_004387986.1	CDS	Alide2_2098	NC_015422.1	2189638	2189964	D	KEGG: dac:Daci_3076 hypothetical protein; hypothetical protein	2189638..2189964	Alicycliphilus denitrificans K601	10483139
YP_004387987.1	CDS	Alide2_2099	NC_015422.1	2189983	2190504	R	PFAM: Protein of unknown function DUF3016; KEGG: dac:Daci_0667 hypothetical protein; hypothetical protein	complement(2189983..2190504)	Alicycliphilus denitrificans K601	10483140
YP_004387988.1	CDS	Alide2_2100	NC_015422.1	2190611	2191471	R	KEGG: dac:Daci_3579 PEP phosphonomutase; PFAM: Isocitrate lyase/phosphorylmutase; methylisocitrate lyase	complement(2190611..2191471)	Alicycliphilus denitrificans K601	10483141
YP_004387989.1	CDS	Alide2_2101	NC_015422.1	2191633	2192796	R	KEGG: dac:Daci_3586 AcnD-accessory protein PrpF; TIGRFAM: PrpF, AcnD-accessory; PFAM: PrpF protein; AcnD-accessory protein PrpF	complement(2191633..2192796)	Alicycliphilus denitrificans K601	10483142
YP_004387990.1	CDS	Alide2_2102	NC_015422.1	2192824	2195427	R	TIGRFAM: 2-methylisocitrate dehydratase AcnD, Fe/S-dependent; KEGG: dia:Dtpsy_2080 aconitate hydratase; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; 2-methylisocitrate dehydratase, Fe/S-dependent	complement(2192824..2195427)	Alicycliphilus denitrificans K601	10483143
YP_004387991.1	CDS	Alide2_2103	NC_015422.1	2195447	2196607	R	TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; KEGG: ajs:Ajs_1635 methylcitrate synthase; PFAM: Citrate synthase-like; 2-methylcitrate synthase/citrate synthase II	complement(2195447..2196607)	Alicycliphilus denitrificans K601	10483144
YP_004387992.1	CDS	Alide2_2104	NC_015422.1	2196604	2196999	R	KEGG: dia:Dtpsy_2078 thioesterase superfamily protein; manually curated; PFAM: Thioesterase superfamily; thioesterase superfamily protein	complement(2196604..2196999)	Alicycliphilus denitrificans K601	10483145
YP_004387993.1	CDS	Alide2_2105	NC_015422.1	2197102	2198562	D	KEGG: ajs:Ajs_1637 XRE family transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator	2197102..2198562	Alicycliphilus denitrificans K601	10483146
YP_004387994.1	CDS	Alide2_2106	NC_015422.1	2198674	2199582	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: cti:RALTA_B2225 putative transcription regulator, LysR family; LysR family transcriptional regulator	complement(2198674..2199582)	Alicycliphilus denitrificans K601	10483147
YP_004387995.1	CDS	Alide2_2107	NC_015422.1	2199712	2200095	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B2224 putative metallothiol transferase; Glyoxalase/bleomycin resistance protein/dioxygenase	2199712..2200095	Alicycliphilus denitrificans K601	10483148
YP_004387996.1	CDS	Alide2_2108	NC_015422.1	2200145	2201212	D	KEGG: hse:Hsero_2301 hypothetical protein; hypothetical protein	2200145..2201212	Alicycliphilus denitrificans K601	10483149
YP_004387997.1	CDS	Alide2_2109	NC_015422.1	2201219	2201665	R	KEGG: ajs:Ajs_1639 RNA-binding S4 domain-containing protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein	complement(2201219..2201665)	Alicycliphilus denitrificans K601	10483150
YP_004387998.1	CDS	Alide2_2110	NC_015422.1	2201688	2203091	R	KEGG: dia:Dtpsy_2074 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(2201688..2203091)	Alicycliphilus denitrificans K601	10483151
YP_004387999.1	CDS	Alide2_2111	NC_015422.1	2203088	2203771	R	KEGG: ajs:Ajs_1641 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(2203088..2203771)	Alicycliphilus denitrificans K601	10483152
YP_004388000.1	CDS	Alide2_2112	NC_015422.1	2203914	2204873	D	KEGG: dia:Dtpsy_2072 hypothetical protein; hypothetical protein	2203914..2204873	Alicycliphilus denitrificans K601	10483153
YP_004388001.1	CDS	Alide2_2113	NC_015422.1	2205010	2205564	D	KEGG: dia:Dtpsy_2071 hypothetical protein; hypothetical protein	2205010..2205564	Alicycliphilus denitrificans K601	10483154
YP_004388002.1	CDS	Alide2_2114	NC_015422.1	2205564	2207093	D	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_1644 hypothetical protein; hypothetical protein	2205564..2207093	Alicycliphilus denitrificans K601	10483155
YP_004388003.1	CDS	Alide2_2115	NC_015422.1	2207159	2209348	D	KEGG: dia:Dtpsy_2060 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane; PFAM: D-(-)-3-hydroxybutyrate oligomer hydrolase, putative; hydroxybutyrate-dimer hydrolase	2207159..2209348	Alicycliphilus denitrificans K601	10483156
YP_004388004.1	CDS	Alide2_2116	NC_015422.1	2209666	2210253	R	KEGG: ctt:CtCNB1_3704 putative lipoprotein; hypothetical protein	complement(2209666..2210253)	Alicycliphilus denitrificans K601	10483157
YP_004388005.1	CDS	Alide2_2117	NC_015422.1	2210438	2210605	R	KEGG: dia:Dtpsy_2056 hypothetical protein; hypothetical protein	complement(2210438..2210605)	Alicycliphilus denitrificans K601	10483158
YP_004388006.1	CDS	Alide2_2118	NC_015422.1	2210619	2211716	R	PFAM: Domain of unknown function DUF395, YeeE/YedE; KEGG: ajs:Ajs_1649 protein of unknown function DUF395, YeeE/YedE; hypothetical protein	complement(2210619..2211716)	Alicycliphilus denitrificans K601	10483159
YP_004388007.1	CDS	Alide2_2119	NC_015422.1	2211811	2212755	R	KEGG: dia:Dtpsy_2054 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; Rhodanese-like protein	complement(2211811..2212755)	Alicycliphilus denitrificans K601	10483160
YP_004388008.1	CDS	Alide2_2120	NC_015422.1	2212870	2213865	R	TIGRFAM: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; PFAM: Ferrochelatase; ferrochelatase	complement(2212870..2213865)	Alicycliphilus denitrificans K601	10483161
YP_004388009.1	CDS	Alide2_2121	NC_015422.1	2213884	2214609	D	KEGG: dac:Daci_2563 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase	2213884..2214609	Alicycliphilus denitrificans K601	10483162
YP_004388010.1	CDS	Alide2_2122	NC_015422.1	2214581	2217337	R	SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2050 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type (transporting) HAD superfamily ATPase	complement(2214581..2217337)	Alicycliphilus denitrificans K601	10483163
YP_004388011.1	CDS	Alide2_2123	NC_015422.1	2217516	2218322	R	PFAM: Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_1655 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein	complement(2217516..2218322)	Alicycliphilus denitrificans K601	10483164
YP_004388012.1	CDS	Alide2_2124	NC_015422.1	2218322	2219623	R	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: ajs:Ajs_1656 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-acetylhomoserine/O-acetylserine sulfhydrylase	complement(2218322..2219623)	Alicycliphilus denitrificans K601	10483165
YP_004388013.1	CDS	Alide2_2125	NC_015422.1	2219739	2220194	D	KEGG: dia:Dtpsy_2047 CBS domain containing protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; CBS domain-containing protein	2219739..2220194	Alicycliphilus denitrificans K601	10483166
YP_004388014.1	CDS	Alide2_2126	NC_015422.1	2220288	2221382	D	TIGRFAM: Chorismate synthase; KEGG: dia:Dtpsy_2046 chorismate synthase; PFAM: Chorismate synthase; chorismate synthase	2220288..2221382	Alicycliphilus denitrificans K601	10483167
YP_004388015.1	CDS	Alide2_2127	NC_015422.1	2221444	2221893	R	KEGG: dia:Dtpsy_2045 transcriptional regulator NrdR; TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; ribonucleotide reductase regulator NrdR-like protein	complement(2221444..2221893)	Alicycliphilus denitrificans K601	10483168
YP_004388016.1	CDS	Alide2_2128	NC_015422.1	2221919	2223163	R	KEGG: dia:Dtpsy_2044 serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase; glycine hydroxymethyltransferase	complement(2221919..2223163)	Alicycliphilus denitrificans K601	10483169
YP_004388017.1	CDS	Alide2_2129	NC_015422.1	2223405	2224217	R	PFAM: Lytic transglycosylase-like, catalytic; KEGG: dia:Dtpsy_2043 lytic transglycosylase catalytic; lytic transglycosylase catalytic subunit	complement(2223405..2224217)	Alicycliphilus denitrificans K601	10483170
YP_004388018.1	CDS	Alide2_2130	NC_015422.1	2224935	2228693	D	PFAM: Protein of unknown function DUF748; Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_1662 hypothetical protein; hypothetical protein	2224935..2228693	Alicycliphilus denitrificans K601	10483171
YP_004388019.1	CDS	Alide2_2131	NC_015422.1	2228917	2231514	D	PFAM: Protein of unknown function DUF349; KEGG: dia:Dtpsy_2041 hypothetical protein; hypothetical protein	2228917..2231514	Alicycliphilus denitrificans K601	10483172
YP_004388020.1	CDS	Alide2_2132	NC_015422.1	2231992	2234283	D	SMART: Ribonuclease II/R; Cold shock protein; RNA-binding domain, S1; manually curated; KEGG: dia:Dtpsy_1240 ribonuclease R; TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, N-terminal OB domain; Ribosomal protein S1, RNA-binding domain; ribonuclease R	2231992..2234283	Alicycliphilus denitrificans K601	10483175
YP_004388021.1	CDS	Alide2_2133	NC_015422.1	2234306	2235061	D	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1241 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	2234306..2235061	Alicycliphilus denitrificans K601	10483176
YP_004388022.1	CDS	Alide2_2134	NC_015422.1	2235152	2235802	D	KEGG: aav:Aave_3388 cytochrome c553-like protein; cytochrome c553-like protein	2235152..2235802	Alicycliphilus denitrificans K601	10483177
YP_004388023.1	CDS	Alide2_2135	NC_015422.1	2235799	2237088	D	KEGG: aav:Aave_3387 cytochrome c, class I; PFAM: Cytochrome c, class I; gluconate 2-dehydrogenase	2235799..2237088	Alicycliphilus denitrificans K601	10483178
YP_004388024.1	CDS	Alide2_2136	NC_015422.1	2237109	2237492	D	PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1244 hypothetical protein; thioredoxin domain-containing protein	2237109..2237492	Alicycliphilus denitrificans K601	10483179
YP_004388025.1	CDS	Alide2_2137	NC_015422.1	2237693	2238283	D	KEGG: dia:Dtpsy_1245 hypothetical protein; HAMAP: Ribosome maturation factor RimP; PFAM: Ribosome maturation factor RimP; ribosome maturation factor rimP	2237693..2238283	Alicycliphilus denitrificans K601	10483180
YP_004388026.1	CDS	Alide2_2138	NC_015422.1	2238352	2239836	D	TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA-binding domain; KEGG: dia:Dtpsy_1246 NusA antitermination factor; SMART: RNA-binding domain, S1; K Homology; NusA antitermination factor	2238352..2239836	Alicycliphilus denitrificans K601	10483181
YP_004388027.1	CDS	Alide2_2139	NC_015422.1	2239861	2242692	D	KEGG: dia:Dtpsy_1247 translation initiation factor IF-2; TIGRFAM: Translation initiation factor aIF-2, bacterial-like; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; Translation initiation factor IF- 2, domain 3; translation initiation factor IF-2	2239861..2242692	Alicycliphilus denitrificans K601	10483182
YP_004388028.1	CDS	Alide2_2140	NC_015422.1	2242696	2243076	D	KEGG: aav:Aave_3382 ribosome-binding factor A; TIGRFAM: Ribosome-binding factor A; PFAM: Ribosome-binding factor A; ribosome-binding factor A	2242696..2243076	Alicycliphilus denitrificans K601	10483183
YP_004388029.1	CDS	Alide2_2141	NC_015422.1	2243069	2244073	D	TIGRFAM: tRNA pseudouridine synthase II, TruB; HAMAP: tRNA pseudouridine synthase II, TruB; KEGG: ajs:Ajs_2559 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II; tRNA pseudouridine synthase B	2243069..2244073	Alicycliphilus denitrificans K601	10483184
YP_004388030.1	CDS	Alide2_2142	NC_015422.1	2244070	2245899	D	KEGG: ajs:Ajs_2558 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein TypA	2244070..2245899	Alicycliphilus denitrificans K601	10483185
YP_004388031.1	CDS	Alide2_2143	NC_015422.1	2245967	2246845	R	KEGG: vap:Vapar_3272 hypothetical protein; hypothetical protein	complement(2245967..2246845)	Alicycliphilus denitrificans K601	10483186
YP_004388032.1	CDS	Alide2_2144	NC_015422.1	2247179	2248270	D	KEGG: ajs:Ajs_2556 3-hydroxyisobutyryl-CoA hydrolase; PFAM: Crotonase, core; 3-hydroxyisobutyryl-CoA hydrolase	2247179..2248270	Alicycliphilus denitrificans K601	10483187
YP_004388033.1	CDS	Alide2_2145	NC_015422.1	2248221	2249063	R	KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor	complement(2248221..2249063)	Alicycliphilus denitrificans K601	10483188
YP_004388034.1	CDS	Alide2_2146	NC_015422.1	2249088	2249612	R	KEGG: dia:Dtpsy_1254 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit	complement(2249088..2249612)	Alicycliphilus denitrificans K601	10483189
YP_004388035.1	CDS	Alide2_2147	NC_015422.1	2249629	2249994	R	KEGG: dia:Dtpsy_1255 secreted repeat of unknown function; hypothetical protein	complement(2249629..2249994)	Alicycliphilus denitrificans K601	10483190
YP_004388036.1	CDS	Alide2_2148	NC_015422.1	2250094	2250567	R	KEGG: dia:Dtpsy_1256 SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SsrA-binding protein; SsrA-binding protein	complement(2250094..2250567)	Alicycliphilus denitrificans K601	10483191
YP_004388037.1	CDS	Alide2_2149	NC_015422.1	2250714	2251154	D	PFAM: Streptomyces cyclase/dehydrase; KEGG: dia:Dtpsy_1257 cyclase/dehydrase; cyclase/dehydrase	2250714..2251154	Alicycliphilus denitrificans K601	10483192
YP_004388038.1	CDS	Alide2_2150	NC_015422.1	2251164	2251490	D	PFAM: Uncharacterised protein family UPF0125; KEGG: ajs:Ajs_2550 hypothetical protein; hypothetical protein	2251164..2251490	Alicycliphilus denitrificans K601	10483193
YP_004388039.1	CDS	Alide2_2151	NC_015422.1	2251499	2252002	R	KEGG: ajs:Ajs_2549 hypothetical protein; hypothetical protein	complement(2251499..2252002)	Alicycliphilus denitrificans K601	10483194
YP_004388040.1	CDS	Alide2_2152	NC_015422.1	2252096	2253571	D	SMART: Cystathionine beta-synthase, core; TIGRFAM: IMP dehydrogenase; KEGG: dia:Dtpsy_1260 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; inosine-5'-monophosphate dehydrogenase	2252096..2253571	Alicycliphilus denitrificans K601	10483195
YP_004388041.1	CDS	Alide2_2153	NC_015422.1	2253645	2255261	D	TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; KEGG: dac:Daci_3013 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; NAD/GMP synthase; GMP synthase, large subunit	2253645..2255261	Alicycliphilus denitrificans K601	10483196
YP_004388042.1	CDS	Alide2_2154	NC_015422.1	2255650	2257176	D	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	2255650..2257176	Alicycliphilus denitrificans K601	10483197
YP_004388043.1	CDS	Alide2_2155	NC_015422.1	2257166	2257969	D	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	2257166..2257969	Alicycliphilus denitrificans K601	10483198
YP_004388044.1	CDS	Alide2_2156	NC_015422.1	2258020	2258808	R	PFAM: Integrase, catalytic core, phage; KEGG: bpt:Bpet1499 putative integrase/recombinase; integrase family protein	complement(2258020..2258808)	Alicycliphilus denitrificans K601	10483199
YP_004388045.1	CDS	Alide2_2157	NC_015422.1	2258805	2260064	R	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: bpt:Bpet1498 putative integrase/recombinase; integrase family protein	complement(2258805..2260064)	Alicycliphilus denitrificans K601	10483200
YP_004388046.1	CDS	Alide2_2159	NC_015422.1	2260648	2260998	D	KEGG: bpt:Bpet2173 putative transposon; putative transposon protein	2260648..2260998	Alicycliphilus denitrificans K601	10483202
YP_004388047.1	CDS	Alide2_2160	NC_015422.1	2261747	2262577	D	PFAM: Protein of unknown function DUF932; KEGG: sml:Smlt1327 hypothetical protein; hypothetical protein	2261747..2262577	Alicycliphilus denitrificans K601	10483203
YP_004388048.1	CDS	Alide2_2161	NC_015422.1	2262658	2264724	D	KEGG: dia:Dtpsy_3534 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease	2262658..2264724	Alicycliphilus denitrificans K601	10483204
YP_004388049.1	CDS	Alide2_2162	NC_015422.1	2264787	2264996	D	KEGG: dac:Daci_2732 hypothetical protein; hypothetical protein	2264787..2264996	Alicycliphilus denitrificans K601	10483205
YP_004388050.1	CDS	Alide2_2163	NC_015422.1	2265201	2265428	R	KEGG: rfr:Rfer_0855 hypothetical protein; hypothetical protein	complement(2265201..2265428)	Alicycliphilus denitrificans K601	10483206
YP_004388051.1	CDS	Alide2_2164	NC_015422.1	2265425	2265703	R	KEGG: psa:PST_3433 periplasmic transport protein; MerP; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component	complement(2265425..2265703)	Alicycliphilus denitrificans K601	10483207
YP_004388052.1	CDS	Alide2_2165	NC_015422.1	2265714	2266061	R	PFAM: Mercuric transport protein MerT; KEGG: psa:PST_3432 mercuric transport protein; Mercuric transport protein MerT	complement(2265714..2266061)	Alicycliphilus denitrificans K601	10483208
YP_004388053.1	CDS	Alide2_2166	NC_015422.1	2266135	2266530	D	TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: rme:Rmet_5990 mercury resistance regulatory protein MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	2266135..2266530	Alicycliphilus denitrificans K601	10483209
YP_004388054.1	CDS	Alide2_2167	NC_015422.1	2266792	2267841	R	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane; hypothetical protein	complement(2266792..2267841)	Alicycliphilus denitrificans K601	10483210
YP_004388055.1	CDS	Alide2_2168	NC_015422.1	2267945	2268709	D	KEGG: pau:PA14_31180 hypothetical protein; hypothetical protein	2267945..2268709	Alicycliphilus denitrificans K601	10483211
YP_004388056.1	CDS	Alide2_2169	NC_015422.1	2268721	2269035	D	PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein; hypothetical protein	2268721..2269035	Alicycliphilus denitrificans K601	10483212
YP_004388057.1	CDS	Alide2_2170	NC_015422.1	2269191	2269484	R	KEGG: bpr:GBP346_A0950 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(2269191..2269484)	Alicycliphilus denitrificans K601	10483213
YP_004388058.1	CDS	Alide2_2171	NC_015422.1	2269710	2270057	D	KEGG: rme:Rmet_1482 hypothetical protein; hypothetical protein	2269710..2270057	Alicycliphilus denitrificans K601	10483214
YP_004388059.1	CDS	Alide2_2172	NC_015422.1	2270314	2270637	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	2270314..2270637	Alicycliphilus denitrificans K601	10483215
YP_004388060.1	CDS	Alide2_2173	NC_015422.1	2270634	2271548	D	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	2270634..2271548	Alicycliphilus denitrificans K601	10483216
YP_004388061.1	CDS	Alide2_2174	NC_015422.1	2271720	2272472	D	PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein; hypothetical protein	2271720..2272472	Alicycliphilus denitrificans K601	10483217
YP_004388062.1	CDS	Alide2_2175	NC_015422.1	2272556	2272837	D	KEGG: ajs:Ajs_2652 hypothetical protein; hypothetical protein	2272556..2272837	Alicycliphilus denitrificans K601	10483218
YP_004388063.1	CDS	Alide2_2176	NC_015422.1	2272852	2273697	D	PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein; Replication initiator protein A	2272852..2273697	Alicycliphilus denitrificans K601	10483219
YP_004388064.1	CDS	Alide2_2177	NC_015422.1	2273951	2274589	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_1255 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase	2273951..2274589	Alicycliphilus denitrificans K601	10483220
YP_004388065.1	CDS	Alide2_2178	NC_015422.1	2274586	2274870	D	KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein	2274586..2274870	Alicycliphilus denitrificans K601	10483221
YP_004388066.1	CDS	Alide2_2179	NC_015422.1	2274867	2275412	D	KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein	2274867..2275412	Alicycliphilus denitrificans K601	10483222
YP_004388067.1	CDS	Alide2_2180	NC_015422.1	2275409	2275996	D	PFAM: Peptidase S26, conserved region; KEGG: rme:Rmet_1258 TraF peptidase; peptidase S26	2275409..2275996	Alicycliphilus denitrificans K601	10483223
YP_004388068.1	CDS	Alide2_2181	NC_015422.1	2276445	2278442	D	KEGG: pau:PA14_31070 hypothetical protein; hypothetical protein	2276445..2278442	Alicycliphilus denitrificans K601	10483224
YP_004388069.1	CDS	Alide2_2182	NC_015422.1	2278637	2280316	R	KEGG: net:Neut_0014 twin-arginine translocation pathway signal; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; Bilirubin oxidase	complement(2278637..2280316)	Alicycliphilus denitrificans K601	10483225
YP_004388070.1	CDS	Alide2_2183	NC_015422.1	2280491	2280604	R	hypothetical protein	complement(2280491..2280604)	Alicycliphilus denitrificans K601	10483226
YP_004388071.1	CDS	Alide2_2184	NC_015422.1	2280760	2281107	R	KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein	complement(2280760..2281107)	Alicycliphilus denitrificans K601	10483227
YP_004388072.1	CDS	Alide2_2185	NC_015422.1	2281233	2282642	R	TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_2202 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase	complement(2281233..2282642)	Alicycliphilus denitrificans K601	10483228
YP_004388073.1	CDS	Alide2_2186	NC_015422.1	2282643	2283326	R	TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_2725 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator	complement(2282643..2283326)	Alicycliphilus denitrificans K601	10483229
YP_004388074.1	CDS	Alide2_2187	NC_015422.1	2283451	2285271	D	KEGG: bmj:BMULJ_00903 copper resistance transmembrane protein; TIGRFAM: Copper-resistance protein CopA; Twin-arginine translocation pathway, signal sequence; PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 1; Multicopper oxidase, type 2; copper-resistance protein, CopA family	2283451..2285271	Alicycliphilus denitrificans K601	10483230
YP_004388075.1	CDS	Alide2_2188	NC_015422.1	2285478	2286476	D	KEGG: bmj:BMULJ_00902 copper resistance protein B; manually curated; PFAM: Copper resistance B precursor; copper resistance B	2285478..2286476	Alicycliphilus denitrificans K601	10483231
YP_004388076.1	CDS	Alide2_2189	NC_015422.1	2286499	2287005	D	PFAM: Blue (type 1) copper domain; KEGG: net:Neut_0023 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein	2286499..2287005	Alicycliphilus denitrificans K601	10483232
YP_004388077.1	CDS	Alide2_2190	NC_015422.1	2287060	2287401	D	KEGG: ajs:Ajs_2667 hypothetical protein; hypothetical protein	2287060..2287401	Alicycliphilus denitrificans K601	10483233
YP_004388078.1	CDS	Alide2_2191	NC_015422.1	2287476	2287955	D	KEGG: dia:Dtpsy_2195 hypothetical protein; hypothetical protein	2287476..2287955	Alicycliphilus denitrificans K601	10483234
YP_004388079.1	CDS	Alide2_2192	NC_015422.1	2287966	2288244	D	KEGG: dia:Dtpsy_2194 hypothetical protein; hypothetical protein	2287966..2288244	Alicycliphilus denitrificans K601	10483235
YP_004388080.1	CDS	Alide2_2193	NC_015422.1	2288249	2288890	D	KEGG: dia:Dtpsy_2193 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase	2288249..2288890	Alicycliphilus denitrificans K601	10483236
YP_004388081.1	CDS	Alide2_2194	NC_015422.1	2288947	2289045	D	hypothetical protein	2288947..2289045	Alicycliphilus denitrificans K601	10483237
YP_004388082.1	CDS	Alide2_2195	NC_015422.1	2289146	2289424	D	PFAM: Heavy metal transport/detoxification protein; KEGG: ajs:Ajs_1492 heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein	2289146..2289424	Alicycliphilus denitrificans K601	10483238
YP_004388083.1	CDS	Alide2_2196	NC_015422.1	2289434	2291098	D	KEGG: rpf:Rpic12D_5298 hypothetical protein; hypothetical protein	2289434..2291098	Alicycliphilus denitrificans K601	10483239
YP_004388084.1	CDS	Alide2_2197	NC_015422.1	2291107	2291610	D	PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2192 cytochrome c class I; cytochrome c class I	2291107..2291610	Alicycliphilus denitrificans K601	10483240
YP_004388085.1	CDS	Alide2_2198	NC_015422.1	2291728	2294196	D	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2710 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	2291728..2294196	Alicycliphilus denitrificans K601	10483241
YP_004388086.1	CDS	Alide2_2199	NC_015422.1	2294193	2294432	D	KEGG: maq:Maqu_0130 hypothetical protein; hypothetical protein	2294193..2294432	Alicycliphilus denitrificans K601	10483242
YP_004388087.1	CDS	Alide2_2200	NC_015422.1	2294452	2294910	D	KEGG: axy:AXYL_01135 hypothetical protein; hypothetical protein	2294452..2294910	Alicycliphilus denitrificans K601	10483243
YP_004388088.1	CDS	Alide2_2201	NC_015422.1	2294986	2296302	D	KEGG: axy:AXYL_01137 heavy metal RND efflux outer membrane protein, CzcC family; heavy metal RND efflux outer membrane protein, CzcC family	2294986..2296302	Alicycliphilus denitrificans K601	10483244
YP_004388089.1	CDS	Alide2_2202	NC_015422.1	2296317	2297831	D	TIGRFAM: Secretion protein HlyD; KEGG: axy:AXYL_01138 RND family efflux transporter MFP subunit 3; RND family efflux transporter MFP subunit	2296317..2297831	Alicycliphilus denitrificans K601	10483245
YP_004388090.1	CDS	Alide2_2203	NC_015422.1	2297828	2300947	D	KEGG: axy:AXYL_01139 cation efflux system protein CusA; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	2297828..2300947	Alicycliphilus denitrificans K601	10483246
YP_004388091.1	CDS	Alide2_2205	NC_015422.1	2301591	2302394	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(2301591..2302394)	Alicycliphilus denitrificans K601	10483248
YP_004388092.1	CDS	Alide2_2206	NC_015422.1	2302384	2303910	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(2302384..2303910)	Alicycliphilus denitrificans K601	10483249
YP_004388093.1	CDS	Alide2_2208	NC_015422.1	2304823	2305845	D	PFAM: Integrase, catalytic core, phage; KEGG: bam:Bamb_2021 phage integrase family protein; integrase family protein	2304823..2305845	Alicycliphilus denitrificans K601	10483251
YP_004388094.1	CDS	Alide2_2209	NC_015422.1	2305814	2307109	R	KEGG: dia:Dtpsy_2288 type II citrate synthase; TIGRFAM: Citrate synthase, type II; PFAM: Citrate synthase-like; citrate synthase I	complement(2305814..2307109)	Alicycliphilus denitrificans K601	10483252
YP_004388095.1	CDS	Alide2_2210	NC_015422.1	2307156	2307428	R	PFAM: Protein of unknown function DUF339; KEGG: ajs:Ajs_2797 hypothetical protein; hypothetical protein	complement(2307156..2307428)	Alicycliphilus denitrificans K601	10483253
YP_004388096.1	CDS	Alide2_2211	NC_015422.1	2307449	2308153	R	TIGRFAM: Succinate dehydrogenase/fumarate reductase iron-sulphur protein; KEGG: dac:Daci_2424 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: Ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein	complement(2307449..2308153)	Alicycliphilus denitrificans K601	10483254
YP_004388097.1	CDS	Alide2_2212	NC_015422.1	2308182	2309987	R	TIGRFAM: Succinate dehydrogenase, flavoprotein subunit; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; KEGG: dia:Dtpsy_2285 succinate dehydrogenase, flavoprotein subunit; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; succinate dehydrogenase, flavoprotein subunit	complement(2308182..2309987)	Alicycliphilus denitrificans K601	10483255
YP_004388098.1	CDS	Alide2_2213	NC_015422.1	2310038	2310403	R	KEGG: aav:Aave_2203 succinate dehydrogenase subunit D; TIGRFAM: Succinate dehydrogenase, hydrophobic membrane anchor; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein	complement(2310038..2310403)	Alicycliphilus denitrificans K601	10483256
YP_004388099.1	CDS	Alide2_2214	NC_015422.1	2310428	2310859	R	KEGG: dia:Dtpsy_2283 succinate dehydrogenase, cytochrome b556 subunit; TIGRFAM: Succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit; succinate dehydrogenase, cytochrome b556 subunit	complement(2310428..2310859)	Alicycliphilus denitrificans K601	10483257
YP_004388100.1	CDS	Alide2_2215	NC_015422.1	2311010	2311801	R	KEGG: dia:Dtpsy_2282 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(2311010..2311801)	Alicycliphilus denitrificans K601	10483258
YP_004388101.1	CDS	Alide2_2216	NC_015422.1	2311984	2312970	D	KEGG: dia:Dtpsy_2281 malate dehydrogenase; TIGRFAM: Malate dehydrogenase, NAD/NADP; PFAM: Lactate/malate dehydrogenase, N-terminal; Lactate/malate dehydrogenase, C-terminal; malate dehydrogenase	2311984..2312970	Alicycliphilus denitrificans K601	10483259
YP_004388102.1	CDS	Alide2_2217	NC_015422.1	2312983	2313774	D	KEGG: dac:Daci_2430 trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11; trans-aconitate 2-methyltransferase	2312983..2313774	Alicycliphilus denitrificans K601	10483260
YP_004388103.1	CDS	Alide2_2218	NC_015422.1	2313982	2314626	D	KEGG: dia:Dtpsy_2278 hypothetical protein; hypothetical protein	2313982..2314626	Alicycliphilus denitrificans K601	10483261
YP_004388104.1	CDS	Alide2_2219	NC_015422.1	2314744	2317335	D	KEGG: ajs:Ajs_2787 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; TIGRFAM: Aconitase B, bacterial; PFAM: Aconitase B, N-terminal, bacterial; Aconitase B, HEAT-like, bacterial; Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; aconitate hydratase 2	2314744..2317335	Alicycliphilus denitrificans K601	10483262
YP_004388105.1	CDS	Alide2_2220	NC_015422.1	2317555	2318448	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_3364 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2317555..2318448)	Alicycliphilus denitrificans K601	10483264
YP_004388106.1	CDS	Alide2_2221	NC_015422.1	2318555	2320261	D	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: ctt:CtCNB1_3363 acyl-CoA dehydrogenase-like protein; acyl-CoA dehydrogenase domain-containing protein	2318555..2320261	Alicycliphilus denitrificans K601	10483265
YP_004388107.1	CDS	Alide2_2222	NC_015422.1	2320368	2321360	D	KEGG: ctt:CtCNB1_3361 AccB; hypothetical protein	2320368..2321360	Alicycliphilus denitrificans K601	10483266
YP_004388108.1	CDS	Alide2_2223	NC_015422.1	2321367	2322527	D	KEGG: ctt:CtCNB1_3358 L-carnitine dehydratase/bile acid-inducible; PFAM: CoA-transferase family III; formyl-CoA transferase	2321367..2322527	Alicycliphilus denitrificans K601	10483267
YP_004388109.1	CDS	Alide2_2224	NC_015422.1	2322538	2323887	R	TIGRFAM: Glutathione reductase, eukaryote/bacterial; KEGG: dac:Daci_2356 glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; glutathione-disulfide reductase	complement(2322538..2323887)	Alicycliphilus denitrificans K601	10483268
YP_004388110.1	CDS	Alide2_2225	NC_015422.1	2324055	2324522	D	KEGG: vei:Veis_4544 2Fe-2S iron-sulfur cluster binding domain-containing protein; PFAM: [2Fe-2S]-binding; Ferredoxin; carbon-monoxide dehydrogenase	2324055..2324522	Alicycliphilus denitrificans K601	10483269
YP_004388111.1	CDS	Alide2_2226	NC_015422.1	2324556	2326928	D	KEGG: vap:Vapar_1594 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; carbon-monoxide dehydrogenase	2324556..2326928	Alicycliphilus denitrificans K601	10483270
YP_004388112.1	CDS	Alide2_2227	NC_015422.1	2326942	2327733	D	KEGG: pol:Bpro_0576 molybdopterin dehydrogenase, FAD-binding; PFAM: Molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein, C-terminal; carbon-monoxide dehydrogenase	2326942..2327733	Alicycliphilus denitrificans K601	10483271
YP_004388113.1	CDS	Alide2_2228	NC_015422.1	2327863	2328777	D	KEGG: dac:Daci_2251 ATPase; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core; ATPase	2327863..2328777	Alicycliphilus denitrificans K601	10483272
YP_004388114.1	CDS	Alide2_2229	NC_015422.1	2328780	2330021	D	KEGG: vei:Veis_4536 VWA containing CoxE family protein; PFAM: vWA containing CoxE-like; SMART: von Willebrand factor, type A; VWA containing CoxE family protein	2328780..2330021	Alicycliphilus denitrificans K601	10483273
YP_004388115.1	CDS	Alide2_2230	NC_015422.1	2330035	2330586	D	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G	2330035..2330586	Alicycliphilus denitrificans K601	10483274
YP_004388116.1	CDS	Alide2_2231	NC_015422.1	2330596	2331636	D	PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein; XshC-Cox1 family protein	2330596..2331636	Alicycliphilus denitrificans K601	10483275
YP_004388117.1	CDS	Alide2_2232	NC_015422.1	2331636	2332283	D	PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase	2331636..2332283	Alicycliphilus denitrificans K601	10483276
YP_004388118.1	CDS	Alide2_2233	NC_015422.1	2332291	2333166	R	KEGG: dia:Dtpsy_2274 hypothetical protein; hypothetical protein	complement(2332291..2333166)	Alicycliphilus denitrificans K601	10483277
YP_004388119.1	CDS	Alide2_2234	NC_015422.1	2333269	2335293	R	KEGG: gox:GOX2135 hypothetical protein; hypothetical protein	complement(2333269..2335293)	Alicycliphilus denitrificans K601	10483278
YP_004388120.1	CDS	Alide2_2235	NC_015422.1	2335308	2336639	R	PFAM: Amine oxidase; KEGG: xal:XALc_2703 protoporphyrinogen oxidase protein; amine oxidase	complement(2335308..2336639)	Alicycliphilus denitrificans K601	10483279
YP_004388121.1	CDS	Alide2_2236	NC_015422.1	2336645	2337610	R	KEGG: reh:H16_A2892 hypothetical protein; manually curated; PFAM: Lysylphosphatidylglycerol synthetase/UPF0104; Lysylphosphatidylglycerol synthetase/UPF0104	complement(2336645..2337610)	Alicycliphilus denitrificans K601	10483280
YP_004388122.1	CDS	Alide2_2237	NC_015422.1	2337607	2338620	R	KEGG: cph:Cpha266_0350 glycosyl transferase family protein; manually curated; PFAM: Glycosyl transferase, family 2; family 2 glycosyl transferase	complement(2337607..2338620)	Alicycliphilus denitrificans K601	10483281
YP_004388123.1	CDS	Alide2_2238	NC_015422.1	2338719	2340092	R	PFAM: Peptidase U32; KEGG: dia:Dtpsy_2273 peptidase U32; peptidase U32	complement(2338719..2340092)	Alicycliphilus denitrificans K601	10483282
YP_004388124.1	CDS	Alide2_2239	NC_015422.1	2340141	2341511	R	KEGG: dac:Daci_1894 hypothetical protein; hypothetical protein	complement(2340141..2341511)	Alicycliphilus denitrificans K601	10483283
YP_004388125.1	CDS	Alide2_2240	NC_015422.1	2341539	2342420	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2444 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(2341539..2342420)	Alicycliphilus denitrificans K601	10483284
YP_004388126.1	CDS	Alide2_2242	NC_015422.1	2343034	2344389	R	PFAM: Transposase, IS4-like; KEGG: pna:Pnap_4647 transposase, IS4 family protein; transposase IS4 family protein	complement(2343034..2344389)	Alicycliphilus denitrificans K601	10483286
YP_004388127.1	CDS	Alide2_2243	NC_015422.1	2344806	2345339	R	KEGG: dia:Dtpsy_2271 two component transcriptional regulator, fis family; PFAM: Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; two component Fis family transcriptional regulator	complement(2344806..2345339)	Alicycliphilus denitrificans K601	10483287
YP_004388128.1	CDS	Alide2_2244	NC_015422.1	2345340	2346656	R	KEGG: ajs:Ajs_2780 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(2345340..2346656)	Alicycliphilus denitrificans K601	10483288
YP_004388129.1	CDS	Alide2_2245	NC_015422.1	2346653	2347462	R	PFAM: Surfeit locus 1; KEGG: ajs:Ajs_2779 surfeit locus 1 family protein; Surfeit locus 1 family protein	complement(2346653..2347462)	Alicycliphilus denitrificans K601	10483289
YP_004388130.1	CDS	Alide2_2246	NC_015422.1	2347459	2347833	R	KEGG: ajs:Ajs_2778 cytochrome c oxidase subunit IV; TIGRFAM: Cytochrome o ubiquinol oxidase subunit IV; PFAM: Cytochrome C oxidase subunit IV prokaryotic; cytochrome o ubiquinol oxidase subunit IV	complement(2347459..2347833)	Alicycliphilus denitrificans K601	10483290
YP_004388131.1	CDS	Alide2_2247	NC_015422.1	2347834	2348466	R	KEGG: dia:Dtpsy_2267 cytochrome o ubiquinol oxidase, subunit III; TIGRFAM: Cytochrome o ubiquinol oxidase, subunit III; PFAM: Cytochrome c oxidase, subunit III; cytochrome o ubiquinol oxidase subunit III	complement(2347834..2348466)	Alicycliphilus denitrificans K601	10483291
YP_004388132.1	CDS	Alide2_2248	NC_015422.1	2348459	2350465	R	TIGRFAM: Cytochrome o ubiquinol oxidase, subunit I; KEGG: ajs:Ajs_2776 cytochrome-c oxidase; PFAM: Cytochrome c oxidase, subunit I; cytochrome o ubiquinol oxidase subunit I	complement(2348459..2350465)	Alicycliphilus denitrificans K601	10483292
YP_004388133.1	CDS	Alide2_2249	NC_015422.1	2350490	2351479	R	KEGG: ajs:Ajs_2775 ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome o ubiquinol oxidase subunit II; PFAM: COX aromatic rich; Cytochrome c oxidase subunit II C-terminal; ubiquinol oxidase subunit II	complement(2350490..2351479)	Alicycliphilus denitrificans K601	10483293
YP_004388134.1	CDS	Alide2_2250	NC_015422.1	2351781	2353112	D	PFAM: General substrate transporter; KEGG: ajs:Ajs_2774 general substrate transporter; general substrate transporter	2351781..2353112	Alicycliphilus denitrificans K601	10483294
YP_004388135.1	CDS	Alide2_2251	NC_015422.1	2353221	2354183	R	KEGG: dia:Dtpsy_2263 protein TolA; TIGRFAM: Tol-Pal system, TolA; TonB, C-terminal; PFAM: Tol-Pal system, TolA; protein TolA	complement(2353221..2354183)	Alicycliphilus denitrificans K601	10483295
YP_004388136.1	CDS	Alide2_2252	NC_015422.1	2354205	2354630	R	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2772 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR	complement(2354205..2354630)	Alicycliphilus denitrificans K601	10483296
YP_004388137.1	CDS	Alide2_2253	NC_015422.1	2354644	2355345	R	KEGG: dia:Dtpsy_2261 protein TolQ; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ	complement(2354644..2355345)	Alicycliphilus denitrificans K601	10483297
YP_004388138.1	CDS	Alide2_2254	NC_015422.1	2355342	2355764	R	KEGG: dia:Dtpsy_2260 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; tol-pal system-associated acyl-CoA thioesterase	complement(2355342..2355764)	Alicycliphilus denitrificans K601	10483298
YP_004388139.1	CDS	Alide2_2255	NC_015422.1	2355767	2356951	R	KEGG: dia:Dtpsy_2259 aminotransferase; PFAM: Aminotransferase, class I/classII; aspartate transaminase	complement(2355767..2356951)	Alicycliphilus denitrificans K601	10483299
YP_004388140.1	CDS	Alide2_2256	NC_015422.1	2357023	2357568	R	TIGRFAM: NusB antitermination factor; HAMAP: NusB antitermination factor; KEGG: dia:Dtpsy_2258 NusB antitermination factor; PFAM: NusB/RsmB/TIM44; NusB antitermination factor	complement(2357023..2357568)	Alicycliphilus denitrificans K601	10483300
YP_004388141.1	CDS	Alide2_2257	NC_015422.1	2357565	2358029	R	KEGG: ajs:Ajs_2767 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase	complement(2357565..2358029)	Alicycliphilus denitrificans K601	10483301
YP_004388142.1	CDS	Alide2_2258	NC_015422.1	2358033	2359154	R	KEGG: dia:Dtpsy_2256 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB; GTP cyclohydrolase II, RibA; 3,4-dihydroxy-2-butanone 4-phosphate synthase	complement(2358033..2359154)	Alicycliphilus denitrificans K601	10483302
YP_004388143.1	CDS	Alide2_2259	NC_015422.1	2359292	2359579	R	PFAM: Ferredoxin; KEGG: dia:Dtpsy_2255 ferredoxin; ferredoxin	complement(2359292..2359579)	Alicycliphilus denitrificans K601	10483303
YP_004388144.1	CDS	Alide2_2260	NC_015422.1	2359937	2360818	R	PFAM: NUDIX hydrolase domain; KEGG: pna:Pnap_2699 NUDIX hydrolase; NUDIX hydrolase	complement(2359937..2360818)	Alicycliphilus denitrificans K601	10483304
YP_004388145.1	CDS	Alide2_2261	NC_015422.1	2360949	2361857	D	KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxyacyl-CoA dehydrogenase	2360949..2361857	Alicycliphilus denitrificans K601	10483305
YP_004388146.1	CDS	Alide2_2262	NC_015422.1	2361965	2363497	D	TIGRFAM: Glutamate--cysteine ligase, monofunctional; KEGG: dia:Dtpsy_1339 glutamate/cysteine ligase; PFAM: Glutamate--cysteine ligase; glutamate/cysteine ligase	2361965..2363497	Alicycliphilus denitrificans K601	10483306
YP_004388147.1	CDS	Alide2_2263	NC_015422.1	2363540	2365723	D	KEGG: vap:Vapar_3567 protein of unknown function DUF893 YccS/YhfK; hypothetical protein	2363540..2365723	Alicycliphilus denitrificans K601	10483307
YP_004388148.1	CDS	Alide2_2264	NC_015422.1	2365720	2365932	R	KEGG: aav:Aave_2269 hypothetical protein; hypothetical protein	complement(2365720..2365932)	Alicycliphilus denitrificans K601	10483308
YP_004388149.1	CDS	Alide2_2265	NC_015422.1	2366030	2366395	R	PFAM: Endoribonuclease L-PSP; KEGG: pol:Bpro_4413 endoribonuclease L-PSP; endoribonuclease L-PSP	complement(2366030..2366395)	Alicycliphilus denitrificans K601	10483309
YP_004388150.1	CDS	Alide2_2266	NC_015422.1	2366430	2367818	R	PFAM: BFD-like [2Fe-2S]-binding domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_4414 BFD-like (2Fe-2S)-binding region; BFD domain-containing protein (2Fe-2S)-binding domain-containing protein	complement(2366430..2367818)	Alicycliphilus denitrificans K601	10483310
YP_004388151.1	CDS	Alide2_2267	NC_015422.1	2367820	2368164	R	KEGG: pol:Bpro_4415 hypothetical protein; hypothetical protein	complement(2367820..2368164)	Alicycliphilus denitrificans K601	10483311
YP_004388152.1	CDS	Alide2_2268	NC_015422.1	2368154	2369290	R	KEGG: pol:Bpro_4416 FAD dependent oxidoreductase; manually curated; PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase	complement(2368154..2369290)	Alicycliphilus denitrificans K601	10483312
YP_004388153.1	CDS	Alide2_2269	NC_015422.1	2369335	2370318	R	KEGG: dac:Daci_0779 hypothetical protein; hypothetical protein	complement(2369335..2370318)	Alicycliphilus denitrificans K601	10483313
YP_004388154.1	CDS	Alide2_2270	NC_015422.1	2370393	2371316	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_4347 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(2370393..2371316)	Alicycliphilus denitrificans K601	10483314
YP_004388155.1	CDS	Alide2_2271	NC_015422.1	2371489	2372448	D	KEGG: ajs:Ajs_2510 GTP-binding protein, HSR1-related; TIGRFAM: GTP-binding protein, ribosome biogenesis, YlqF; PFAM: GTP-binding protein, HSR1-related; ribosome biogenesis GTP-binding protein YlqF	2371489..2372448	Alicycliphilus denitrificans K601	10483315
YP_004388156.1	CDS	Alide2_2272	NC_015422.1	2372530	2374359	R	KEGG: dia:Dtpsy_1352 hypothetical protein; hypothetical protein	complement(2372530..2374359)	Alicycliphilus denitrificans K601	10483316
YP_004388157.1	CDS	Alide2_2273	NC_015422.1	2374406	2375176	R	KEGG: dia:Dtpsy_1355 pseudouridine synthase; manually curated; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase	complement(2374406..2375176)	Alicycliphilus denitrificans K601	10483317
YP_004388158.1	CDS	Alide2_2274	NC_015422.1	2375173	2375466	R	KEGG: dia:Dtpsy_1356 hypothetical protein; hypothetical protein	complement(2375173..2375466)	Alicycliphilus denitrificans K601	10483318
YP_004388159.1	CDS	Alide2_2275	NC_015422.1	2375570	2376496	D	PFAM: Phosphoesterase, DHHA1; KEGG: ajs:Ajs_2502 phosphoesterase, DHHA1; phosphoesterase DHHA1	2375570..2376496	Alicycliphilus denitrificans K601	10483319
YP_004388160.1	CDS	Alide2_2276	NC_015422.1	2376547	2377782	R	PFAM: Major facilitator superfamily MFS-1; KEGG: aav:Aave_2285 major facilitator superfamily transporter; major facilitator superfamily protein	complement(2376547..2377782)	Alicycliphilus denitrificans K601	10483320
YP_004388161.1	CDS	Alide2_2277	NC_015422.1	2377824	2378249	R	KEGG: ajs:Ajs_2501 nuclease; PFAM: Staphylococcal nuclease (SNase-like); SMART: Staphylococcal nuclease (SNase-like); nuclease	complement(2377824..2378249)	Alicycliphilus denitrificans K601	10483321
YP_004388162.1	CDS	Alide2_2278	NC_015422.1	2378348	2379223	D	TIGRFAM: RarD protein; KEGG: dia:Dtpsy_1360 RarD protein, DMT superfamily transporter; RarD protein, DMT superfamily transporter	2378348..2379223	Alicycliphilus denitrificans K601	10483322
YP_004388163.1	CDS	Alide2_2279	NC_015422.1	2379257	2379823	R	KEGG: dia:Dtpsy_1363 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; pseudouridine synthase Rsu	complement(2379257..2379823)	Alicycliphilus denitrificans K601	10483323
YP_004388164.1	CDS	Alide2_2280	NC_015422.1	2379820	2380650	R	PFAM: Peptidase M23; KEGG: ajs:Ajs_2496 peptidase M23B; peptidase M23	complement(2379820..2380650)	Alicycliphilus denitrificans K601	10483324
YP_004388165.1	CDS	Alide2_2281	NC_015422.1	2380923	2382326	D	KEGG: dia:Dtpsy_1365 fumarate lyase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; aspartate ammonia-lyase	2380923..2382326	Alicycliphilus denitrificans K601	10483325
YP_004388166.1	CDS	Alide2_2282	NC_015422.1	2382399	2383205	R	PFAM: Domain of unknown function DUF306, Meta/HslJ; KEGG: dac:Daci_2483 hypothetical protein; hypothetical protein	complement(2382399..2383205)	Alicycliphilus denitrificans K601	10483326
YP_004388167.1	CDS	Alide2_2283	NC_015422.1	2383271	2383810	R	PFAM: Protein of unknown function DUF924; KEGG: hel:HELO_3084 protein of unknown function DUF924; hypothetical protein	complement(2383271..2383810)	Alicycliphilus denitrificans K601	10483327
YP_004388168.1	CDS	Alide2_2284	NC_015422.1	2383828	2385639	R	TIGRFAM: Glutaminyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_1608 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; glutaminyl-tRNA synthetase	complement(2383828..2385639)	Alicycliphilus denitrificans K601	10483328
YP_004388169.1	CDS	Alide2_2285	NC_015422.1	2385779	2386117	D	KEGG: dia:Dtpsy_2105 hypothetical protein; hypothetical protein	2385779..2386117	Alicycliphilus denitrificans K601	10483329
YP_004388170.1	CDS	Alide2_2286	NC_015422.1	2386226	2386675	D	TIGRFAM: Dehydroquinase, class II; KEGG: ajs:Ajs_1610 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; 3-dehydroquinate dehydratase	2386226..2386675	Alicycliphilus denitrificans K601	10483330
YP_004388171.1	CDS	Alide2_2287	NC_015422.1	2386669	2387562	D	PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2103 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein	2386669..2387562	Alicycliphilus denitrificans K601	10483331
YP_004388172.1	CDS	Alide2_2288	NC_015422.1	2387559	2387984	D	PFAM: Peptide chain release factor class I/class II; KEGG: dia:Dtpsy_2102 class I peptide chain release factor; Class I peptide chain release factor	2387559..2387984	Alicycliphilus denitrificans K601	10483332
YP_004388173.1	CDS	Alide2_2289	NC_015422.1	2388086	2388922	D	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase III subunit B; extradiol ring-cleavage dioxygenase class III protein subunit B	2388086..2388922	Alicycliphilus denitrificans K601	10483333
YP_004388174.1	CDS	Alide2_2290	NC_015422.1	2388919	2389614	D	PFAM: Phospholipase/carboxylesterase; KEGG: vei:Veis_2297 phospholipase/carboxylesterase; phospholipase/carboxylesterase	2388919..2389614	Alicycliphilus denitrificans K601	10483334
YP_004388175.1	CDS	Alide2_2291	NC_015422.1	2389795	2390673	D	KEGG: ajs:Ajs_1615 hypothetical protein; hypothetical protein	2389795..2390673	Alicycliphilus denitrificans K601	10483335
YP_004388176.1	CDS	Alide2_2292	NC_015422.1	2390692	2391162	R	KEGG: ajs:Ajs_1616 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	complement(2390692..2391162)	Alicycliphilus denitrificans K601	10483336
YP_004388177.1	CDS	Alide2_2293	NC_015422.1	2391266	2393893	D	TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; Alpha-ketoglutarate dehydrogenase; KEGG: ajs:Ajs_1617 2-oxoacid dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; 2-oxo-acid dehydrogenase E1 subunit	2391266..2393893	Alicycliphilus denitrificans K601	10483337
YP_004388178.1	CDS	Alide2_2294	NC_015422.1	2393910	2395193	R	PFAM: Amidase; KEGG: bpt:Bpet0082 putative amidase; amidase	complement(2393910..2395193)	Alicycliphilus denitrificans K601	10483338
YP_004388179.1	CDS	Alide2_2295	NC_015422.1	2395202	2396194	R	KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein	complement(2395202..2396194)	Alicycliphilus denitrificans K601	10483339
YP_004388180.1	CDS	Alide2_2296	NC_015422.1	2396305	2397222	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator	2396305..2397222	Alicycliphilus denitrificans K601	10483340
YP_004388181.1	CDS	Alide2_2297	NC_015422.1	2397257	2398036	D	KEGG: vap:Vapar_5148 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	2397257..2398036	Alicycliphilus denitrificans K601	10483341
YP_004388182.1	CDS	Alide2_2298	NC_015422.1	2398189	2399511	D	PFAM: Major facilitator superfamily MFS-1; KEGG: vap:Vapar_5147 major facilitator superfamily MFS_1; major facilitator superfamily protein	2398189..2399511	Alicycliphilus denitrificans K601	10483342
YP_004388183.1	CDS	Alide2_2299	NC_015422.1	2399523	2400413	D	KEGG: vap:Vapar_5146 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase	2399523..2400413	Alicycliphilus denitrificans K601	10483343
YP_004388184.1	CDS	Alide2_2300	NC_015422.1	2400484	2401497	D	PFAM: NAD-dependent epimerase/dehydratase; KEGG: vap:Vapar_5145 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase	2400484..2401497	Alicycliphilus denitrificans K601	10483344
YP_004388185.1	CDS	Alide2_2301	NC_015422.1	2401501	2402763	D	PFAM: Protein of unknown function, DUF1537; KEGG: vap:Vapar_5144 type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein	2401501..2402763	Alicycliphilus denitrificans K601	10483345
YP_004388186.1	CDS	Alide2_2302	NC_015422.1	2402760	2403425	D	PFAM: Class II aldolase/adducin, N-terminal; KEGG: vap:Vapar_5143 putative aldolase; class II aldolase/adducin family protein	2402760..2403425	Alicycliphilus denitrificans K601	10483346
YP_004388187.1	CDS	Alide2_2303	NC_015422.1	2403435	2404244	D	KEGG: pol:Bpro_4876 hydroxypyruvate isomerase; PFAM: Xylose isomerase, TIM barrel domain; hydroxypyruvate isomerase	2403435..2404244	Alicycliphilus denitrificans K601	10483347
YP_004388188.1	CDS	Alide2_2304	NC_015422.1	2404286	2405119	R	PFAM: Protein of unknown function DUF980; KEGG: ajs:Ajs_1618 hypothetical protein; hypothetical protein	complement(2404286..2405119)	Alicycliphilus denitrificans K601	10483348
YP_004388189.1	CDS	Alide2_2305	NC_015422.1	2405124	2405906	R	PFAM: Metallo-dependent phosphatase; KEGG: dia:Dtpsy_2095 UDP-2,3-diacylglucosamine hydrolase; metallophosphoesterase	complement(2405124..2405906)	Alicycliphilus denitrificans K601	10483349
YP_004388190.1	CDS	Alide2_2306	NC_015422.1	2405911	2406438	R	KEGG: dia:Dtpsy_2094 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidylprolyl isomerase	complement(2405911..2406438)	Alicycliphilus denitrificans K601	10483350
YP_004388191.1	CDS	Alide2_2307	NC_015422.1	2406460	2407047	R	KEGG: dia:Dtpsy_2093 peptidyl-prolyl cis-trans isomerase cyclophilin type; PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; peptidylprolyl isomerase	complement(2406460..2407047)	Alicycliphilus denitrificans K601	10483351
YP_004388192.1	CDS	Alide2_2308	NC_015422.1	2407044	2408414	R	PFAM: YkuD domain; KEGG: aav:Aave_2318 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein	complement(2407044..2408414)	Alicycliphilus denitrificans K601	10483352
YP_004388193.1	CDS	Alide2_2309	NC_015422.1	2408493	2409563	R	PFAM: Tetratricopeptide TPR-1; KEGG: aav:Aave_2319 TPR repeat-containing protein; hypothetical protein	complement(2408493..2409563)	Alicycliphilus denitrificans K601	10483353
YP_004388194.1	CDS	Alide2_2310	NC_015422.1	2409787	2411163	D	SMART: Cysteinyl-tRNA synthetase, class Ia, DALR; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase, class Ia; Cysteinyl-tRNA synthetase, class Ia, DALR; cysteinyl-tRNA synthetase	2409787..2411163	Alicycliphilus denitrificans K601	10483354
YP_004388195.1	CDS	Alide2_2311	NC_015422.1	2411209	2411856	D	SMART: HhH-GPD domain; manually curated; KEGG: dia:Dtpsy_2090 HhH-GPD family protein; PFAM: HhH-GPD domain; DNA-3-methyladenine glycosylase II	2411209..2411856	Alicycliphilus denitrificans K601	10483355
YP_004388196.1	CDS	Alide2_2312	NC_015422.1	2411908	2412885	D	PFAM: Acetyl-CoA carboxylase, alpha subunit; TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: ajs:Ajs_1625 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	2411908..2412885	Alicycliphilus denitrificans K601	10483356
YP_004388197.1	CDS	Alide2_2313	NC_015422.1	2412953	2413960	D	KEGG: ajs:Ajs_1627 tRNA(Ile)-lysidine synthetase; TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; PFAM: tRNA(Ile)-lysidine/2-thiocytidine synthase; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; tRNA(Ile)-lysidine synthetase	2412953..2413960	Alicycliphilus denitrificans K601	10483357
YP_004388198.1	CDS	Alide2_2314	NC_015422.1	2413997	2415268	D	KEGG: aav:Aave_2324 aspartate kinase; TIGRFAM: Aspartate kinase domain; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate kinase	2413997..2415268	Alicycliphilus denitrificans K601	10483358
YP_004388199.1	CDS	Alide2_2315	NC_015422.1	2415315	2416670	R	PFAM: Chloride channel, voltage gated; KEGG: aav:Aave_4712 Cl-channel, voltage-gated family protein; Cl- channel voltage-gated family protein	complement(2415315..2416670)	Alicycliphilus denitrificans K601	10483359
YP_004388200.1	CDS	Alide2_2316	NC_015422.1	2417121	2417729	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_1833 TetR family transcriptional regulator; TetR family transcriptional regulator	2417121..2417729	Alicycliphilus denitrificans K601	10483361
YP_004388201.1	CDS	Alide2_2317	NC_015422.1	2417726	2418877	D	KEGG: dia:Dtpsy_1685 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	2417726..2418877	Alicycliphilus denitrificans K601	10483362
YP_004388202.1	CDS	Alide2_2318	NC_015422.1	2418874	2420073	D	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_1686 protein of unknown function DUF214; hypothetical protein	2418874..2420073	Alicycliphilus denitrificans K601	10483363
YP_004388203.1	CDS	Alide2_2319	NC_015422.1	2420078	2420788	D	PFAM: ABC transporter-like; KEGG: ajs:Ajs_1836 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	2420078..2420788	Alicycliphilus denitrificans K601	10483364
YP_004388204.1	CDS	Alide2_2320	NC_015422.1	2420859	2422187	R	KEGG: ajs:Ajs_1837 lytic murein transglycosylase; TIGRFAM: Lytic murein transglycosylase; PFAM: Peptidoglycan binding-like; lytic murein transglycosylase	complement(2420859..2422187)	Alicycliphilus denitrificans K601	10483365
YP_004388205.1	CDS	Alide2_2321	NC_015422.1	2422234	2423670	D	KEGG: ajs:Ajs_1838 exonuclease I; PFAM: Exonuclease C-terminal; Exonuclease, RNase T/DNA polymerase III; exodeoxyribonuclease I	2422234..2423670	Alicycliphilus denitrificans K601	10483366
YP_004388206.1	CDS	Alide2_2322	NC_015422.1	2423642	2424490	D	PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; KEGG: ajs:Ajs_1839 silent information regulator protein Sir2; Silent information regulator protein Sir2	2423642..2424490	Alicycliphilus denitrificans K601	10483367
YP_004388207.1	CDS	Alide2_2323	NC_015422.1	2424623	2426986	D	KEGG: dia:Dtpsy_1696 putative phytochrome sensor protein; PFAM: Uncharacterised protein family UPF0118; GAF; SMART: GAF; putative phytochrome sensor protein	2424623..2426986	Alicycliphilus denitrificans K601	10483368
YP_004388208.1	CDS	Alide2_2324	NC_015422.1	2426968	2427537	R	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_3219 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	complement(2426968..2427537)	Alicycliphilus denitrificans K601	10483369
YP_004388209.1	CDS	Alide2_2325	NC_015422.1	2427534	2428163	R	KEGG: xtr:100496255 uracil phosphoribosyltransferase-like; TIGRFAM: Uracil phosphoribosyl transferase; PFAM: Phosphoribosyltransferase; uracil phosphoribosyltransferase	complement(2427534..2428163)	Alicycliphilus denitrificans K601	10483370
YP_004388210.1	CDS	Alide2_2326	NC_015422.1	2428252	2429238	R	KEGG: dia:Dtpsy_1698 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threo-3-hydroxyaspartate ammonia-lyase	complement(2428252..2429238)	Alicycliphilus denitrificans K601	10483371
YP_004388211.1	CDS	Alide2_2327	NC_015422.1	2429489	2430193	D	PFAM: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1700 hypothetical protein; hypothetical protein	2429489..2430193	Alicycliphilus denitrificans K601	10483372
YP_004388212.1	CDS	Alide2_2329	NC_015422.1	2430857	2432281	D	TIGRFAM: Cytochrome c oxidase cbb3 type, accessory protein FixG; KEGG: dia:Dtpsy_1004 cytochrome c oxidase accessory protein CcoG; cytochrome c oxidase accessory protein CcoG	2430857..2432281	Alicycliphilus denitrificans K601	10483374
YP_004388213.1	CDS	Alide2_2330	NC_015422.1	2432308	2433726	D	PFAM: Cytochrome d ubiquinol oxidase, subunit I; KEGG: ara:Arad_12230 cytochrome bd-type quinol oxidase subunit 1; cytochrome bd ubiquinol oxidase subunit I	2432308..2433726	Alicycliphilus denitrificans K601	10483375
YP_004388214.1	CDS	Alide2_2331	NC_015422.1	2433730	2434740	D	KEGG: msl:Msil_2643 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: Cytochrome d ubiquinol oxidase, subunit II; PFAM: Cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II	2433730..2434740	Alicycliphilus denitrificans K601	10483376
YP_004388215.1	CDS	Alide2_2332	NC_015422.1	2434740	2434886	D	PFAM: Protein of unknown function DUF2474; KEGG: ara:Arad_12232 hypothetical protein; hypothetical protein	2434740..2434886	Alicycliphilus denitrificans K601	10483377
YP_004388216.1	CDS	Alide2_2333	NC_015422.1	2435301	2435996	R	PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein; LrgB family protein	complement(2435301..2435996)	Alicycliphilus denitrificans K601	10483378
YP_004388217.1	CDS	Alide2_2334	NC_015422.1	2435993	2436394	R	PFAM: Uncharacterised protein family LrgA/YohJ; KEGG: dac:Daci_2210 LrgA family protein; LrgA family protein	complement(2435993..2436394)	Alicycliphilus denitrificans K601	10483379
YP_004388218.1	CDS	Alide2_2335	NC_015422.1	2436603	2438030	D	PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; KEGG: mpt:Mpe_A0752 GntR family transcriptional regulator; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator	2436603..2438030	Alicycliphilus denitrificans K601	10483380
YP_004388219.1	CDS	Alide2_2336	NC_015422.1	2438119	2438820	R	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: dia:Dtpsy_1701 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein	complement(2438119..2438820)	Alicycliphilus denitrificans K601	10483381
YP_004388220.1	CDS	Alide2_2337	NC_015422.1	2438891	2440396	R	KEGG: dia:Dtpsy_1702 protein of unknown function DUF853 NPT hydrolase putative; PFAM: Protein of unknown function DUF853, nucleotide triphosphate hydrolase, putative; SMART: ATPase, AAA+ type, core; hypothetical protein	complement(2438891..2440396)	Alicycliphilus denitrificans K601	10483382
YP_004388221.1	CDS	Alide2_2338	NC_015422.1	2440469	2441188	D	TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: dia:Dtpsy_1703 hypothetical protein; PFAM: Protein of unknown function DUF28; hypothetical protein	2440469..2441188	Alicycliphilus denitrificans K601	10483383
YP_004388222.1	CDS	Alide2_2339	NC_015422.1	2441185	2442471	D	TIGRFAM: Phosphoribosylglycinamide synthetase; KEGG: ajs:Ajs_1899 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine/glycine ligase	2441185..2442471	Alicycliphilus denitrificans K601	10483384
YP_004388223.1	CDS	Alide2_2340	NC_015422.1	2442471	2443397	D	HAMAP: Coproporphyrinogen III oxidase; KEGG: dia:Dtpsy_1705 coproporphyrinogen III oxidase; PFAM: Coproporphyrinogen III oxidase; coproporphyrinogen-III oxidase	2442471..2443397	Alicycliphilus denitrificans K601	10483385
YP_004388224.1	CDS	Alide2_2341	NC_015422.1	2443481	2444161	D	KEGG: dia:Dtpsy_1706 iojap-like protein; TIGRFAM: Ribosome-associated, Iojap-like; PFAM: Ribosome-associated, Iojap-like; iojap-like protein	2443481..2444161	Alicycliphilus denitrificans K601	10483386
YP_004388225.1	CDS	Alide2_2342	NC_015422.1	2444161	2444628	D	TIGRFAM: Ribosomal RNA large subunit methyltransferase H; HAMAP: SPOUT methyltransferase, predicted; KEGG: aav:Aave_3199 rRNA large subunit methyltransferase; PFAM: SPOUT methyltransferase, predicted; ribosomal RNA large subunit methyltransferase H	2444161..2444628	Alicycliphilus denitrificans K601	10483387
YP_004388226.1	CDS	Alide2_2343	NC_015422.1	2444696	2445301	D	KEGG: xtr:100495456 hypothetical protein LOC100495456; TIGRFAM: Maf-like protein; PFAM: Maf-like protein; maf protein	2444696..2445301	Alicycliphilus denitrificans K601	10483388
YP_004388227.1	CDS	Alide2_2344	NC_015422.1	2445307	2446026	R	KEGG: dia:Dtpsy_1709 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator	complement(2445307..2446026)	Alicycliphilus denitrificans K601	10483389
YP_004388228.1	CDS	Alide2_2345	NC_015422.1	2446233	2447828	R	KEGG: dia:Dtpsy_1710 cytochrome d1 heme region; PFAM: Cytochrome c, class I; hydroxylamine reductase	complement(2446233..2447828)	Alicycliphilus denitrificans K601	10483390
YP_004388229.1	CDS	Alide2_2346	NC_015422.1	2447821	2449041	R	KEGG: dia:Dtpsy_1711 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain-containing protein	complement(2447821..2449041)	Alicycliphilus denitrificans K601	10483391
YP_004388230.1	CDS	Alide2_2347	NC_015422.1	2449044	2449523	R	KEGG: ajs:Ajs_1907 AsnC family transcriptional regulator; putative AsnC family transcriptional regulator	complement(2449044..2449523)	Alicycliphilus denitrificans K601	10483392
YP_004388231.1	CDS	Alide2_2348	NC_015422.1	2449504	2451006	R	KEGG: dia:Dtpsy_1714 putative transcriptional regulator, AsnC family; hypothetical protein	complement(2449504..2451006)	Alicycliphilus denitrificans K601	10483393
YP_004388232.1	CDS	Alide2_2349	NC_015422.1	2451010	2452218	R	KEGG: ajs:Ajs_1910 cytochrome d1, heme region; cytochrome d1, heme region	complement(2451010..2452218)	Alicycliphilus denitrificans K601	10483394
YP_004388233.1	CDS	Alide2_2350	NC_015422.1	2452215	2452568	R	KEGG: dia:Dtpsy_1716 hypothetical protein; hypothetical protein	complement(2452215..2452568)	Alicycliphilus denitrificans K601	10483395
YP_004388234.1	CDS	Alide2_2351	NC_015422.1	2452591	2454315	R	KEGG: dia:Dtpsy_1717 hydroxylamine reductase; PFAM: Cytochrome c, class I; hydroxylamine reductase	complement(2452591..2454315)	Alicycliphilus denitrificans K601	10483396
YP_004388235.1	CDS	Alide2_2352	NC_015422.1	2454527	2455354	D	TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: dia:Dtpsy_1718 uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase	2454527..2455354	Alicycliphilus denitrificans K601	10483397
YP_004388236.1	CDS	Alide2_2353	NC_015422.1	2455436	2456923	D	TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA-binding domain; KEGG: ajs:Ajs_1914 ribonuclease G; SMART: RNA-binding domain, S1; Rne/Rng family ribonuclease	2455436..2456923	Alicycliphilus denitrificans K601	10483398
YP_004388237.1	CDS	Alide2_2354	NC_015422.1	2457099	2458784	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pca:Pcar_0095 putative sensory transduction system, regulatory protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	2457099..2458784	Alicycliphilus denitrificans K601	10483399
YP_004388238.1	CDS	Alide2_2355	NC_015422.1	2458718	2459491	R	PFAM: LysR, substrate-binding; KEGG: hmg:100212933 similar to lysR transcriptional regulator; LysR family transcriptional regulator	complement(2458718..2459491)	Alicycliphilus denitrificans K601	10483400
YP_004388239.1	CDS	Alide2_2356	NC_015422.1	2459560	2460711	R	KEGG: dia:Dtpsy_1720 putative aminotransferase; PFAM: Aminotransferase, class I/classII; Kynurenine--oxoglutarate transaminase	complement(2459560..2460711)	Alicycliphilus denitrificans K601	10483401
YP_004388240.1	CDS	Alide2_2357	NC_015422.1	2460853	2461794	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1721 transcriptional regulator CysB-like protein; LysR family transcriptional regulator	complement(2460853..2461794)	Alicycliphilus denitrificans K601	10483402
YP_004388241.1	CDS	Alide2_2358	NC_015422.1	2461838	2462218	R	PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: dia:Dtpsy_1722 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein	complement(2461838..2462218)	Alicycliphilus denitrificans K601	10483403
YP_004388242.1	CDS	Alide2_2359	NC_015422.1	2462252	2463352	R	PFAM: Permease YjgP/YjgQ, predicted; KEGG: dia:Dtpsy_1723 permease YjgP/YjgQ family protein; permease YjgP/YjgQ family protein	complement(2462252..2463352)	Alicycliphilus denitrificans K601	10483404
YP_004388243.1	CDS	Alide2_2360	NC_015422.1	2463349	2464443	R	KEGG: dia:Dtpsy_1724 permease YjgP/YjgQ family protein; manually curated; PFAM: Permease YjgP/YjgQ, predicted; permease YjgP/YjgQ family protein	complement(2463349..2464443)	Alicycliphilus denitrificans K601	10483405
YP_004388244.1	CDS	Alide2_2361	NC_015422.1	2464467	2465960	D	PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; KEGG: ajs:Ajs_1921 PepA aminopeptidase; peptidase M17 leucyl aminopeptidase domain-containing protein	2464467..2465960	Alicycliphilus denitrificans K601	10483406
YP_004388245.1	CDS	Alide2_2362	NC_015422.1	2465960	2466424	D	PFAM: DNA polymerase III chi subunit, HolC; KEGG: ajs:Ajs_1922 DNA polymerase III chi subunit, HolC; DNA polymerase III subunit chi HolC	2465960..2466424	Alicycliphilus denitrificans K601	10483407
YP_004388246.1	CDS	Alide2_2363	NC_015422.1	2466424	2466825	D	KEGG: dia:Dtpsy_1727 hypothetical protein; hypothetical protein	2466424..2466825	Alicycliphilus denitrificans K601	10483408
YP_004388247.1	CDS	Alide2_2364	NC_015422.1	2466954	2468087	D	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_1925 extracellular ligand-binding receptor; extracellular ligand-binding receptor	2466954..2468087	Alicycliphilus denitrificans K601	10483409
YP_004388248.1	CDS	Alide2_2365	NC_015422.1	2468178	2469185	R	KEGG: ajs:Ajs_1926 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase	complement(2468178..2469185)	Alicycliphilus denitrificans K601	10483410
YP_004388249.1	CDS	Alide2_2369	NC_015422.1	2471601	2472131	D	manually curated; KEGG: ajs:Ajs_1927 hypothetical protein; hypothetical protein	2471601..2472131	Alicycliphilus denitrificans K601	10483414
YP_004388250.1	CDS	Alide2_2370	NC_015422.1	2472156	2472905	D	KEGG: dia:Dtpsy_1731 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2257; hypothetical protein	2472156..2472905	Alicycliphilus denitrificans K601	10483415
YP_004388251.1	CDS	Alide2_2371	NC_015422.1	2473000	2473440	D	PFAM: UspA; KEGG: dia:Dtpsy_1732 UspA domain protein; UspA domain-containing protein	2473000..2473440	Alicycliphilus denitrificans K601	10483416
YP_004388252.1	CDS	Alide2_2372	NC_015422.1	2473502	2474014	R	KEGG: dac:Daci_4355 hypothetical protein; TIGRFAM: Haemerythrin-like, metal-binding; PFAM: Haemerythrin/HHE cation-binding motif; hemerythrin-like metal-binding protein	complement(2473502..2474014)	Alicycliphilus denitrificans K601	10483417
YP_004388253.1	CDS	Alide2_2373	NC_015422.1	2474127	2475104	R	KEGG: ajs:Ajs_1930 hypothetical protein; hypothetical protein	complement(2474127..2475104)	Alicycliphilus denitrificans K601	10483418
YP_004388254.1	CDS	Alide2_2374	NC_015422.1	2475245	2476429	R	TIGRFAM: Thiolase; KEGG: xtr:100490341 acetyl-CoA acetyltransferase-like; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	complement(2475245..2476429)	Alicycliphilus denitrificans K601	10483419
YP_004388255.1	CDS	Alide2_2375	NC_015422.1	2476538	2477308	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_1735 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(2476538..2477308)	Alicycliphilus denitrificans K601	10483420
YP_004388256.1	CDS	Alide2_2376	NC_015422.1	2477342	2478019	R	PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: ajs:Ajs_1933 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase	complement(2477342..2478019)	Alicycliphilus denitrificans K601	10483421
YP_004388257.1	CDS	Alide2_2377	NC_015422.1	2478009	2480177	R	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_1737 signal transduction histidine kinase, nitrogen specific, NtrB; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; Signal transduction response regulator, receiver domain; PAS/PAC sensor hybrid histidine kinase	complement(2478009..2480177)	Alicycliphilus denitrificans K601	10483422
YP_004388258.1	CDS	Alide2_2378	NC_015422.1	2480223	2480621	R	KEGG: dia:Dtpsy_1738 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase	complement(2480223..2480621)	Alicycliphilus denitrificans K601	10483423
YP_004388259.1	CDS	Alide2_2379	NC_015422.1	2480901	2481695	D	KEGG: dia:Dtpsy_1772 two component transcriptional regulator, LuxR family; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator	2480901..2481695	Alicycliphilus denitrificans K601	10483424
YP_004388260.1	CDS	Alide2_2380	NC_015422.1	2481733	2482593	D	KEGG: dia:Dtpsy_1773 putative signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase	2481733..2482593	Alicycliphilus denitrificans K601	10483425
YP_004388261.1	CDS	Alide2_2381	NC_015422.1	2482685	2483272	D	KEGG: dia:Dtpsy_1406 hypothetical protein; hypothetical protein	2482685..2483272	Alicycliphilus denitrificans K601	10483426
YP_004388262.1	CDS	Alide2_2382	NC_015422.1	2483280	2484110	R	PFAM: Redoxin; KEGG: ajs:Ajs_2433 redoxin domain-containing protein; Redoxin domain-containing protein	complement(2483280..2484110)	Alicycliphilus denitrificans K601	10483427
YP_004388263.1	CDS	Alide2_2383	NC_015422.1	2484337	2484960	D	KEGG: dia:Dtpsy_1426 2',5' RNA ligase; 2',5' RNA ligase	2484337..2484960	Alicycliphilus denitrificans K601	10483428
YP_004388264.1	CDS	Alide2_2384	NC_015422.1	2485035	2485514	R	KEGG: ajs:Ajs_2417 hypothetical protein; hypothetical protein	complement(2485035..2485514)	Alicycliphilus denitrificans K601	10483429
YP_004388265.1	CDS	Alide2_2385	NC_015422.1	2485641	2486111	R	KEGG: dia:Dtpsy_1431 hypothetical protein; hypothetical protein	complement(2485641..2486111)	Alicycliphilus denitrificans K601	10483430
YP_004388266.1	CDS	Alide2_2386	NC_015422.1	2486108	2486551	R	KEGG: dia:Dtpsy_1432 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor	complement(2486108..2486551)	Alicycliphilus denitrificans K601	10483431
YP_004388267.1	CDS	Alide2_2387	NC_015422.1	2486567	2487121	R	KEGG: dia:Dtpsy_1433 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; ECF subfamily RNA polymerase sigma-24 subunit	complement(2486567..2487121)	Alicycliphilus denitrificans K601	10483432
YP_004388268.1	CDS	Alide2_2388	NC_015422.1	2487224	2487544	D	KEGG: dia:Dtpsy_1434 hypothetical protein; hypothetical protein	2487224..2487544	Alicycliphilus denitrificans K601	10483433
YP_004388269.1	CDS	Alide2_2389	NC_015422.1	2487596	2489047	D	PFAM: (Uracil-5)-methyltransferase; manually curated; TIGRFAM: 23S rRNA methyltransferase/RumA; KEGG: dia:Dtpsy_1435 23S rRNA 5-methyluridine methyltransferase; HAMAP: 23S rRNA methyltransferase/RumA; 23S rRNA (uracil-5-)-methyltransferase rumA	2487596..2489047	Alicycliphilus denitrificans K601	10483434
YP_004388270.1	CDS	Alide2_2390	NC_015422.1	2489059	2490402	D	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; TIGRFAM: D-serine ammonia-lyase; HAMAP: D-serine dehydratase; KEGG: ajs:Ajs_2250 D-serine dehydratase; D-serine dehydratase	2489059..2490402	Alicycliphilus denitrificans K601	10483435
YP_004388271.1	CDS	Alide2_2391	NC_015422.1	2490418	2491008	R	PFAM: Uncharacterised protein family UPF0029, Impact, N-terminal; Uncharacterised protein family UPF0029, Impact, C-terminal; KEGG: ajs:Ajs_2244 hypothetical protein; hypothetical protein	complement(2490418..2491008)	Alicycliphilus denitrificans K601	10483436
YP_004388272.1	CDS	Alide2_2392	NC_015422.1	2491190	2491648	D	KEGG: har:HEAR1365 azurin precursor; TIGRFAM: Azurin, proteobacteria; PFAM: Blue (type 1) copper domain; azurin blue-copper protein	2491190..2491648	Alicycliphilus denitrificans K601	10483437
YP_004388273.1	CDS	Alide2_2393	NC_015422.1	2491725	2494151	D	HAMAP: Uncharacterised protein family UPF0313; PFAM: Radical SAM N-terminal; Radical SAM; KEGG: dia:Dtpsy_1631 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein	2491725..2494151	Alicycliphilus denitrificans K601	10483438
YP_004388274.1	CDS	Alide2_2394	NC_015422.1	2494261	2495457	R	KEGG: ajs:Ajs_2151 aromatic amino acid aminotransferase; PFAM: Aminotransferase, class I/classII; aspartate transaminase	complement(2494261..2495457)	Alicycliphilus denitrificans K601	10483439
YP_004388275.1	CDS	Alide2_2395	NC_015422.1	2495573	2497660	D	TIGRFAM: Excinuclease ABC, B subunit; PFAM: Helicase, C-terminal; UvrB/UvrC protein; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dia:Dtpsy_1636 excinuclease ABC subunit B; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; excinuclease ABC subunit B	2495573..2497660	Alicycliphilus denitrificans K601	10483440
YP_004388276.1	CDS	Alide2_2396	NC_015422.1	2497911	2498447	D	KEGG: dia:Dtpsy_1637 transcriptional regulator, BadM/Rrf2 family; TIGRFAM: ISC system FeS cluster assembly, IscR transcription factor; Transcription regulator Rrf2; PFAM: Transcription regulator Rrf2; BadM/Rrf2 family transcriptional regulator	2497911..2498447	Alicycliphilus denitrificans K601	10483441
YP_004388277.1	CDS	Alide2_2397	NC_015422.1	2498523	2499743	D	TIGRFAM: Cysteine desulfurase; KEGG: dia:Dtpsy_1638 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase IscS	2498523..2499743	Alicycliphilus denitrificans K601	10483442
YP_004388278.1	CDS	Alide2_2398	NC_015422.1	2499766	2500167	D	KEGG: dia:Dtpsy_1639 FeS cluster assembly scaffold IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; FeS cluster assembly scaffold IscU	2499766..2500167	Alicycliphilus denitrificans K601	10483443
YP_004388279.1	CDS	Alide2_2399	NC_015422.1	2500175	2500498	D	KEGG: dia:Dtpsy_1640 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly protein IscA	2500175..2500498	Alicycliphilus denitrificans K601	10483444
YP_004388280.1	CDS	Alide2_2400	NC_015422.1	2500556	2501074	D	TIGRFAM: Co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal; KEGG: dia:Dtpsy_1641 co-chaperone Hsc20; SMART: Heat shock protein DnaJ, N-terminal; co-chaperone Hsc20	2500556..2501074	Alicycliphilus denitrificans K601	10483445
YP_004388281.1	CDS	Alide2_2401	NC_015422.1	2501111	2502979	D	KEGG: dia:Dtpsy_1642 chaperone protein HscA; TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA	2501111..2502979	Alicycliphilus denitrificans K601	10483446
YP_004388282.1	CDS	Alide2_2402	NC_015422.1	2503015	2503353	D	KEGG: dia:Dtpsy_1643 ferredoxin, 2Fe-2S type, ISC system; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin; ferredoxin, 2Fe-2S type, ISC system	2503015..2503353	Alicycliphilus denitrificans K601	10483447
YP_004388283.1	CDS	Alide2_2403	NC_015422.1	2503353	2504081	D	SMART: Exonuclease; TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; KEGG: ajs:Ajs_2138 DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; DNA polymerase III subunit epsilon	2503353..2504081	Alicycliphilus denitrificans K601	10483448
YP_004388284.1	CDS	Alide2_2404	NC_015422.1	2504375	2505487	D	PFAM: FAD dependent oxidoreductase; KEGG: ajs:Ajs_2136 FAD dependent oxidoreductase; FAD dependent oxidoreductase	2504375..2505487	Alicycliphilus denitrificans K601	10483451
YP_004388285.1	CDS	Alide2_2405	NC_015422.1	2505620	2505928	D	PFAM: Protein of unknown function DUF883, ElaB; KEGG: dia:Dtpsy_1647 protein of unknown function DUF883 ElaB; hypothetical protein	2505620..2505928	Alicycliphilus denitrificans K601	10483452
YP_004388286.1	CDS	Alide2_2406	NC_015422.1	2505953	2506357	D	KEGG: dia:Dtpsy_1648 hypothetical protein; hypothetical protein	2505953..2506357	Alicycliphilus denitrificans K601	10483453
YP_004388287.1	CDS	Alide2_2407	NC_015422.1	2506359	2506658	D	KEGG: ajs:Ajs_2133 hypothetical protein; hypothetical protein	2506359..2506658	Alicycliphilus denitrificans K601	10483454
YP_004388288.1	CDS	Alide2_2408	NC_015422.1	2506711	2507757	R	TIGRFAM: Dihydroorotate dehydrogenase, class 2; KEGG: ajs:Ajs_2132 dihydroorotate dehydrogenase 2; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase	complement(2506711..2507757)	Alicycliphilus denitrificans K601	10483455
YP_004388289.1	CDS	Alide2_2409	NC_015422.1	2507793	2508482	D	TIGRFAM: Ribose 5-phosphate isomerase, type A; KEGG: ajs:Ajs_2131 ribose-5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase, type A; ribose 5-phosphate isomerase	2507793..2508482	Alicycliphilus denitrificans K601	10483456
YP_004388290.1	CDS	Alide2_2410	NC_015422.1	2508479	2509120	R	PFAM: Glutaredoxin; KEGG: dia:Dtpsy_1652 glutaredoxin; glutaredoxin	complement(2508479..2509120)	Alicycliphilus denitrificans K601	10483457
YP_004388291.1	CDS	Alide2_2411	NC_015422.1	2509242	2511275	R	KEGG: ajs:Ajs_2129 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; oligopeptidase A	complement(2509242..2511275)	Alicycliphilus denitrificans K601	10483458
YP_004388292.1	CDS	Alide2_2412	NC_015422.1	2511313	2512161	R	KEGG: dac:Daci_3983 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase	complement(2511313..2512161)	Alicycliphilus denitrificans K601	10483459
YP_004388293.1	CDS	Alide2_2413	NC_015422.1	2512244	2512870	R	KEGG: ctt:CtCNB1_2245 two component transcriptional regulator, LuxR; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	complement(2512244..2512870)	Alicycliphilus denitrificans K601	10483460
YP_004388294.1	CDS	Alide2_2414	NC_015422.1	2512867	2515419	R	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1656 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase	complement(2512867..2515419)	Alicycliphilus denitrificans K601	10483461
YP_004388295.1	CDS	Alide2_2415	NC_015422.1	2515616	2518312	D	TIGRFAM: 2-oxo-acid dehydrogenase E1 component homodimeric type; KEGG: dia:Dtpsy_1657 pyruvate dehydrogenase subunit E1; PFAM: Transketolase, N-terminal; 2-oxo-acid dehydrogenase E1 subunit	2515616..2518312	Alicycliphilus denitrificans K601	10483462
YP_004388296.1	CDS	Alide2_2416	NC_015422.1	2518331	2519980	D	TIGRFAM: Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex; KEGG: dia:Dtpsy_1658 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	2518331..2519980	Alicycliphilus denitrificans K601	10483463
YP_004388297.1	CDS	Alide2_2417	NC_015422.1	2519994	2521823	D	KEGG: dia:Dtpsy_1659 dihydrolipoamide dehydrogenase; TIGRFAM: Dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoamide dehydrogenase	2519994..2521823	Alicycliphilus denitrificans K601	10483464
YP_004388298.1	CDS	Alide2_2418	NC_015422.1	2521975	2522256	D	hypothetical protein	2521975..2522256	Alicycliphilus denitrificans K601	10483465
YP_004388299.1	CDS	Alide2_2419	NC_015422.1	2522246	2522620	D	hypothetical protein	2522246..2522620	Alicycliphilus denitrificans K601	10483466
YP_004388300.1	CDS	Alide2_2420	NC_015422.1	2523121	2524089	D	KEGG: aav:Aave_2466 hypothetical protein; hypothetical protein	2523121..2524089	Alicycliphilus denitrificans K601	10483467
YP_004388301.1	CDS	Alide2_2421	NC_015422.1	2524156	2525586	D	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: pna:Pnap_3558 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic	2524156..2525586	Alicycliphilus denitrificans K601	10483468
YP_004388302.1	CDS	Alide2_2422	NC_015422.1	2525645	2526343	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1341 transcriptional regulator, LysR family; LysR family transcriptional regulator	2525645..2526343	Alicycliphilus denitrificans K601	10483469
YP_004388303.1	CDS	Alide2_2423	NC_015422.1	2526383	2526562	D	KEGG: ajs:Ajs_1877 transposase Tn3; transposase Tn3	2526383..2526562	Alicycliphilus denitrificans K601	10483470
YP_004388304.1	CDS	Alide2_2426	NC_015422.1	2527502	2527924	D	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	2527502..2527924	Alicycliphilus denitrificans K601	10483473
YP_004388305.1	CDS	Alide2_2427	NC_015422.1	2527918	2529432	D	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	2527918..2529432	Alicycliphilus denitrificans K601	10483474
YP_004388306.1	CDS	Alide2_2429	NC_015422.1	2529892	2530158	R	PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(2529892..2530158)	Alicycliphilus denitrificans K601	10483476
YP_004388307.1	CDS	Alide2_2431	NC_015422.1	2530458	2531447	D	KEGG: reu:Reut_B3949 hypothetical protein; hypothetical protein	2530458..2531447	Alicycliphilus denitrificans K601	10483478
YP_004388308.1	CDS	Alide2_2432	NC_015422.1	2531565	2532506	D	PFAM: S-adenosylmethionine-dependent methyltransferase; KEGG: dia:Dtpsy_1661 hypothetical protein; S-adenosylmethionine-dependent methyltransferase	2531565..2532506	Alicycliphilus denitrificans K601	10483479
YP_004388309.1	CDS	Alide2_2434	NC_015422.1	2533166	2534050	D	KEGG: ajs:Ajs_2093 6-phosphogluconate dehydrogenase, NAD-binding; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase	2533166..2534050	Alicycliphilus denitrificans K601	10483481
YP_004388310.1	CDS	Alide2_2435	NC_015422.1	2534054	2534716	R	KEGG: ade:Adeh_1681 PE-PGRS family protein; hypothetical protein	complement(2534054..2534716)	Alicycliphilus denitrificans K601	10483482
YP_004388311.1	CDS	Alide2_2436	NC_015422.1	2534741	2535247	R	PFAM: Protein of unknown function DUF55; KEGG: aav:Aave_2834 hypothetical protein; hypothetical protein	complement(2534741..2535247)	Alicycliphilus denitrificans K601	10483483
YP_004388312.1	CDS	Alide2_2437	NC_015422.1	2535244	2535495	R	PFAM: Transglycosylase-associated protein; KEGG: aav:Aave_2831 transglycosylase-associated protein; transglycosylase-associated protein	complement(2535244..2535495)	Alicycliphilus denitrificans K601	10483484
YP_004388313.1	CDS	Alide2_2438	NC_015422.1	2535671	2536243	R	KEGG: ajs:Ajs_2091 NLP/P60 protein; manually curated; PFAM: NLP/P60; NLP/P60 protein	complement(2535671..2536243)	Alicycliphilus denitrificans K601	10483485
YP_004388314.1	CDS	Alide2_2439	NC_015422.1	2536539	2537963	D	PFAM: Amino acid permease domain; KEGG: dac:Daci_3739 D-alanine/D-serine/glycine permease; amino acid permease-associated protein	2536539..2537963	Alicycliphilus denitrificans K601	10483486
YP_004388315.1	CDS	Alide2_2440	NC_015422.1	2538064	2539482	D	KEGG: dia:Dtpsy_1665 drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter	2538064..2539482	Alicycliphilus denitrificans K601	10483487
YP_004388316.1	CDS	Alide2_2441	NC_015422.1	2539679	2542843	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; CHASE; PAS fold; KEGG: dia:Dtpsy_1667 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase	2539679..2542843	Alicycliphilus denitrificans K601	10483488
YP_004388317.1	CDS	Alide2_2442	NC_015422.1	2542858	2543187	D	PFAM: Uncharacterised protein family UPF0060; KEGG: ajs:Ajs_2087 hypothetical protein; hypothetical protein	2542858..2543187	Alicycliphilus denitrificans K601	10483489
YP_004388318.1	CDS	Alide2_2443	NC_015422.1	2543342	2544001	R	KEGG: nar:Saro_2119 hypothetical protein; TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein	complement(2543342..2544001)	Alicycliphilus denitrificans K601	10483490
YP_004388319.1	CDS	Alide2_2444	NC_015422.1	2544270	2547794	D	TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_1669 chromosome segregation protein SMC; SMART: SMCs flexible hinge; chromosome segregation protein SMC	2544270..2547794	Alicycliphilus denitrificans K601	10483491
YP_004388320.1	CDS	Alide2_2445	NC_015422.1	2547805	2548899	D	SMART: ZipA, C-terminal FtsZ-binding domain; KEGG: dia:Dtpsy_1670 ZipA FtsZ-binding region; ZipA FtsZ-binding region protein	2547805..2548899	Alicycliphilus denitrificans K601	10483492
YP_004388321.1	CDS	Alide2_2446	NC_015422.1	2548911	2551064	D	SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: ajs:Ajs_2083 DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase, adenylation; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; NAD-dependent DNA ligase, OB-fold; DNA ligase	2548911..2551064	Alicycliphilus denitrificans K601	10483493
YP_004388322.1	CDS	Alide2_2447	NC_015422.1	2551068	2552003	D	PFAM: Patatin/Phospholipase A2-related; KEGG: ajs:Ajs_2082 patatin; Patatin	2551068..2552003	Alicycliphilus denitrificans K601	10483494
YP_004388323.1	CDS	Alide2_2448	NC_015422.1	2552191	2554674	D	KEGG: ajs:Ajs_2081 glycosyl transferase family protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; peptidoglycan glycosyltransferase	2552191..2554674	Alicycliphilus denitrificans K601	10483495
YP_004388324.1	CDS	Alide2_2449	NC_015422.1	2554685	2555881	D	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1675 major facilitator superfamily MFS_1; major facilitator superfamily protein	2554685..2555881	Alicycliphilus denitrificans K601	10483496
YP_004388325.1	CDS	Alide2_2450	NC_015422.1	2555874	2556422	R	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_1676 NUDIX hydrolase; NUDIX hydrolase	complement(2555874..2556422)	Alicycliphilus denitrificans K601	10483497
YP_004388326.1	CDS	Alide2_2451	NC_015422.1	2556490	2557185	R	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: dia:Dtpsy_1677 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase	complement(2556490..2557185)	Alicycliphilus denitrificans K601	10483498
YP_004388327.1	CDS	Alide2_2452	NC_015422.1	2557299	2557964	D	TIGRFAM: Maleylacetoacetate isomerase; KEGG: dia:Dtpsy_1678 maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal; maleylacetoacetate isomerase	2557299..2557964	Alicycliphilus denitrificans K601	10483499
YP_004388328.1	CDS	Alide2_2453	NC_015422.1	2557957	2558805	D	KEGG: dia:Dtpsy_1679 protein of unknown function DUF152; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; multi-copper polyphenol oxidoreductase, laccase	2557957..2558805	Alicycliphilus denitrificans K601	10483500
YP_004388329.1	CDS	Alide2_2454	NC_015422.1	2558725	2559015	R	KEGG: dia:Dtpsy_1680 hypothetical protein; hypothetical protein	complement(2558725..2559015)	Alicycliphilus denitrificans K601	10483501
YP_004388330.1	CDS	Alide2_2455	NC_015422.1	2559166	2560875	D	KEGG: dia:Dtpsy_1681 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: Poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; poly(R)-hydroxyalkanoic acid synthase, class I	2559166..2560875	Alicycliphilus denitrificans K601	10483502
YP_004388331.1	CDS	Alide2_2456	NC_015422.1	2560955	2562133	D	TIGRFAM: Thiolase; KEGG: ajs:Ajs_2073 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	2560955..2562133	Alicycliphilus denitrificans K601	10483503
YP_004388332.1	CDS	Alide2_2457	NC_015422.1	2562293	2563030	D	TIGRFAM: Acetoacetyl-CoA reductase; KEGG: ajs:Ajs_2072 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase	2562293..2563030	Alicycliphilus denitrificans K601	10483504
YP_004388333.1	CDS	Alide2_2458	NC_015422.1	2563459	2565387	R	KEGG: ajs:Ajs_2071 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(2563459..2565387)	Alicycliphilus denitrificans K601	10483505
YP_004388334.1	CDS	Alide2_2459	NC_015422.1	2565443	2566429	R	KEGG: dac:Daci_3609 hypothetical protein; hypothetical protein	complement(2565443..2566429)	Alicycliphilus denitrificans K601	10483506
YP_004388335.1	CDS	Alide2_2460	NC_015422.1	2566487	2567716	R	KEGG: dac:Daci_3610 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(2566487..2567716)	Alicycliphilus denitrificans K601	10483507
YP_004388336.1	CDS	Alide2_2461	NC_015422.1	2567718	2569298	R	KEGG: dac:Daci_3611 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	complement(2567718..2569298)	Alicycliphilus denitrificans K601	10483508
YP_004388337.1	CDS	Alide2_2462	NC_015422.1	2569403	2570407	R	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dac:Daci_3612 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(2569403..2570407)	Alicycliphilus denitrificans K601	10483509
YP_004388338.1	CDS	Alide2_2463	NC_015422.1	2570409	2571332	R	TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; KEGG: ajs:Ajs_2070 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific	complement(2570409..2571332)	Alicycliphilus denitrificans K601	10483510
YP_004388339.1	CDS	Alide2_2464	NC_015422.1	2571329	2572507	R	KEGG: ajs:Ajs_2069 succinyl-diaminopimelate desuccinylase; TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; PFAM: Peptidase M20; Peptidase M20, dimerisation; succinyl-diaminopimelate desuccinylase	complement(2571329..2572507)	Alicycliphilus denitrificans K601	10483511
YP_004388340.1	CDS	Alide2_2465	NC_015422.1	2572531	2573694	R	TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: dia:Dtpsy_1891 twitching motility protein; SMART: ATPase, AAA+ type, core; twitching motility protein	complement(2572531..2573694)	Alicycliphilus denitrificans K601	10483512
YP_004388341.1	CDS	Alide2_2466	NC_015422.1	2573757	2574581	R	KEGG: dia:Dtpsy_1890 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	complement(2573757..2574581)	Alicycliphilus denitrificans K601	10483513
YP_004388342.1	CDS	Alide2_2467	NC_015422.1	2574589	2575791	R	TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; KEGG: dia:Dtpsy_1889 succinyldiaminopimelate transaminase; PFAM: Aminotransferase, class I/classII; succinyldiaminopimelate transaminase	complement(2574589..2575791)	Alicycliphilus denitrificans K601	10483514
YP_004388343.1	CDS	Alide2_2468	NC_015422.1	2575883	2576566	R	KEGG: dia:Dtpsy_1887 electron transport complex, RnfABCDGE type, B subunit; TIGRFAM: Electron transport complex, RnfB; PFAM: Putative Fe-S cluster; 4Fe-4S binding domain; RnfABCDGE type electron transport complex subunit B	complement(2575883..2576566)	Alicycliphilus denitrificans K601	10483515
YP_004388344.1	CDS	Alide2_2469	NC_015422.1	2576582	2577898	R	KEGG: ajs:Ajs_2063 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: Polyhydroxyalkanoate depolymerase; PFAM: PHB de-polymerase, C-terminal; polyhydroxyalkanoate depolymerase, intracellular	complement(2576582..2577898)	Alicycliphilus denitrificans K601	10483516
YP_004388345.1	CDS	Alide2_2470	NC_015422.1	2578074	2579132	R	KEGG: dia:Dtpsy_1885 RelA/SpoT domain protein; PFAM: RelA/SpoT; SMART: RelA/SpoT; RelA/SpoT domain-containing protein	complement(2578074..2579132)	Alicycliphilus denitrificans K601	10483517
YP_004388346.1	CDS	Alide2_2471	NC_015422.1	2579199	2580149	R	KEGG: dia:Dtpsy_1883 tRNA-dihydrouridine synthase A; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, YjbN; PFAM: tRNA-dihydrouridine synthase; TIM-barrel protein, yjbN family	complement(2579199..2580149)	Alicycliphilus denitrificans K601	10483518
YP_004388347.1	CDS	Alide2_2472	NC_015422.1	2580434	2580895	D	PFAM: MaoC-like dehydratase; KEGG: pde:Pden_4680 dehydratase; MaoC domain-containing protein dehydratase	2580434..2580895	Alicycliphilus denitrificans K601	10483519
YP_004388348.1	CDS	Alide2_2473	NC_015422.1	2580899	2581507	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pde:Pden_4681 TetR family transcriptional regulator; TetR family transcriptional regulator	2580899..2581507	Alicycliphilus denitrificans K601	10483520
YP_004388349.1	CDS	Alide2_2474	NC_015422.1	2581696	2582820	D	PFAM: Saccharopine dehydrogenase / Homospermidine synthase; KEGG: dia:Dtpsy_1846 saccharopine dehydrogenase; Saccharopine dehydrogenase	2581696..2582820	Alicycliphilus denitrificans K601	10483521
YP_004388350.1	CDS	Alide2_2475	NC_015422.1	2582817	2584652	R	KEGG: dia:Dtpsy_1847 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(2582817..2584652)	Alicycliphilus denitrificans K601	10483522
YP_004388351.1	CDS	Alide2_2476	NC_015422.1	2584779	2585414	R	KEGG: dia:Dtpsy_1848 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(2584779..2585414)	Alicycliphilus denitrificans K601	10483523
YP_004388352.1	CDS	Alide2_2477	NC_015422.1	2585428	2586360	R	KEGG: axy:AXYL_01256 3-hydroxy-3-methylglutaryl-CoA lyase 1; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase	complement(2585428..2586360)	Alicycliphilus denitrificans K601	10483524
YP_004388353.1	CDS	Alide2_2478	NC_015422.1	2586363	2587328	R	KEGG: axy:AXYL_01255 extra-cytoplasmic solute receptor family protein 24; extra-cytoplasmic solute receptor family protein	complement(2586363..2587328)	Alicycliphilus denitrificans K601	10483525
YP_004388354.1	CDS	Alide2_2479	NC_015422.1	2587366	2588589	R	KEGG: axy:AXYL_01254 CoA-transferase family III family protein 9; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(2587366..2588589)	Alicycliphilus denitrificans K601	10483526
YP_004388355.1	CDS	Alide2_2480	NC_015422.1	2588693	2590129	R	KEGG: rpt:Rpal_2644 transcriptional regulator, XRE family; PFAM: Protein of unknown function DUF2083,transcriptional regulator; Helix-turn-helix type 3; Protein of unknown function DUF955; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator	complement(2588693..2590129)	Alicycliphilus denitrificans K601	10483527
YP_004388356.1	CDS	Alide2_2481	NC_015422.1	2590260	2592401	D	TIGRFAM: Methylmalonyl-CoA mutase, alpha chain, catalytic; Methylmalonyl-CoA mutase, C-terminal; KEGG: dia:Dtpsy_1849 methylmalonyl-CoA mutase; PFAM: Methylmalonyl-CoA mutase, alpha/beta chain, catalytic; Cobalamin (vitamin B12)-binding; methylmalonyl-CoA mutase, large subunit	2590260..2592401	Alicycliphilus denitrificans K601	10483528
YP_004388357.1	CDS	Alide2_2482	NC_015422.1	2592418	2593425	D	KEGG: xtr:100495832 uncharacterized protein CC_2483-like; TIGRFAM: ArgK protein; PFAM: ArgK protein; LAO/AO transport system ATPase	2592418..2593425	Alicycliphilus denitrificans K601	10483529
YP_004388358.1	CDS	Alide2_2483	NC_015422.1	2593482	2595014	D	KEGG: ajs:Ajs_2042 carboxyl transferase; PFAM: Carboxyl transferase; Propionyl-CoA carboxylase	2593482..2595014	Alicycliphilus denitrificans K601	10483530
YP_004388359.1	CDS	Alide2_2484	NC_015422.1	2595172	2597220	D	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: dia:Dtpsy_1853 carbamoyl-phosphate synthase L chain ATP-binding; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxylase	2595172..2597220	Alicycliphilus denitrificans K601	10483531
YP_004388360.1	CDS	Alide2_2485	NC_015422.1	2597279	2597740	D	KEGG: dia:Dtpsy_1854 lactoylglutathione lyase; lactoylglutathione lyase	2597279..2597740	Alicycliphilus denitrificans K601	10483532
YP_004388361.1	CDS	Alide2_2486	NC_015422.1	2598107	2599180	D	KEGG: ajs:Ajs_2045 biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; TIGRFAM: Biotin synthase; HAMAP: Biotin synthase; SMART: Biotin/thiamin synthesis-associated protein; Elongator protein 3/MiaB/NifB; biotin synthase	2598107..2599180	Alicycliphilus denitrificans K601	10483533
YP_004388362.1	CDS	Alide2_2487	NC_015422.1	2599264	2600271	R	KEGG: pol:Bpro_1449 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein	complement(2599264..2600271)	Alicycliphilus denitrificans K601	10483534
YP_004388363.1	CDS	Alide2_2488	NC_015422.1	2600393	2601073	D	KEGG: pol:Bpro_1450 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	2600393..2601073	Alicycliphilus denitrificans K601	10483535
YP_004388364.1	CDS	Alide2_2489	NC_015422.1	2601039	2602427	D	KEGG: pol:Bpro_1451 histidine kinase; PFAM: Two-component sensor kinase N-terminal; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	2601039..2602427	Alicycliphilus denitrificans K601	10483536
YP_004388365.1	CDS	Alide2_2490	NC_015422.1	2602424	2603395	D	KEGG: pol:Bpro_1452 hypothetical protein; hypothetical protein	2602424..2603395	Alicycliphilus denitrificans K601	10483537
YP_004388366.1	CDS	Alide2_2491	NC_015422.1	2603399	2603845	R	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: pna:Pnap_2833 OsmC family protein; OsmC family protein	complement(2603399..2603845)	Alicycliphilus denitrificans K601	10483538
YP_004388367.1	CDS	Alide2_2492	NC_015422.1	2603842	2604135	R	KEGG: pna:Pnap_2832 rhodanese domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; Rhodanese-like protein	complement(2603842..2604135)	Alicycliphilus denitrificans K601	10483539
YP_004388368.1	CDS	Alide2_2493	NC_015422.1	2604233	2604442	R	KEGG: pna:Pnap_2829 hypothetical protein; hypothetical protein	complement(2604233..2604442)	Alicycliphilus denitrificans K601	10483540
YP_004388369.1	CDS	Alide2_2494	NC_015422.1	2604476	2605612	R	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: alv:Alvin_1195 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase	complement(2604476..2605612)	Alicycliphilus denitrificans K601	10483541
YP_004388370.1	CDS	Alide2_2495	NC_015422.1	2605609	2606901	R	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pna:Pnap_2831 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase	complement(2605609..2606901)	Alicycliphilus denitrificans K601	10483542
YP_004388371.1	CDS	Alide2_2496	NC_015422.1	2606944	2608365	R	PFAM: Outer membrane efflux protein; KEGG: pna:Pnap_2830 TolC family type I secretion outer membrane protein; outer membrane efflux protein	complement(2606944..2608365)	Alicycliphilus denitrificans K601	10483543
YP_004388372.1	CDS	Alide2_2497	NC_015422.1	2608362	2611595	R	PFAM: Acriflavin resistance protein; KEGG: pna:Pnap_2828 acriflavin resistance protein; acriflavin resistance protein	complement(2608362..2611595)	Alicycliphilus denitrificans K601	10483544
YP_004388373.1	CDS	Alide2_2498	NC_015422.1	2611597	2612637	R	KEGG: pna:Pnap_2827 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	complement(2611597..2612637)	Alicycliphilus denitrificans K601	10483545
YP_004388374.1	CDS	Alide2_2499	NC_015422.1	2612737	2613075	D	KEGG: pna:Pnap_2826 regulatory protein, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR	2612737..2613075	Alicycliphilus denitrificans K601	10483546
YP_004388375.1	CDS	Alide2_2501	NC_015422.1	2613477	2614262	R	KEGG: tjr:TherJR_2256 2-dehydro-3-deoxyglucarate aldolase; PFAM: Aldehyde-lyase domain; 4-hydroxy-2-oxovalerate aldolase	complement(2613477..2614262)	Alicycliphilus denitrificans K601	10483548
YP_004388376.1	CDS	Alide2_2502	NC_015422.1	2614298	2614996	R	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rpa:RPA2008 hypothetical protein; Dimethylmenaquinone methyltransferase	complement(2614298..2614996)	Alicycliphilus denitrificans K601	10483549
YP_004388377.1	CDS	Alide2_2503	NC_015422.1	2615006	2616022	R	KEGG: axy:AXYL_04163 extra-cytoplasmic solute receptor family protein 99; extra-cytoplasmic solute receptor family protein	complement(2615006..2616022)	Alicycliphilus denitrificans K601	10483550
YP_004388378.1	CDS	Alide2_2504	NC_015422.1	2616047	2617039	R	KEGG: bpt:Bpet3225 putative secreted protein; hypothetical protein	complement(2616047..2617039)	Alicycliphilus denitrificans K601	10483551
YP_004388379.1	CDS	Alide2_2505	NC_015422.1	2617054	2618094	R	KEGG: bxe:Bxe_C0307 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator	complement(2617054..2618094)	Alicycliphilus denitrificans K601	10483552
YP_004388380.1	CDS	Alide2_2506	NC_015422.1	2618091	2618852	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0308 putative short-chain dehydrogenase/reductase; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase	complement(2618091..2618852)	Alicycliphilus denitrificans K601	10483553
YP_004388381.1	CDS	Alide2_2507	NC_015422.1	2618855	2620174	R	PFAM: Histidinol dehydrogenase, prokaryotic-type; TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: xtr:100486926 histidinol dehydrogenase 2-like; histidinol dehydrogenase	complement(2618855..2620174)	Alicycliphilus denitrificans K601	10483554
YP_004388382.1	CDS	Alide2_2508	NC_015422.1	2620401	2621006	D	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2324 methyltransferase type 11; type 11 methyltransferase	2620401..2621006	Alicycliphilus denitrificans K601	10483555
YP_004388383.1	CDS	Alide2_2509	NC_015422.1	2621017	2621685	D	PFAM: DTW; KEGG: dia:Dtpsy_1758 DTW domain containing protein; DTW domain-containing protein	2621017..2621685	Alicycliphilus denitrificans K601	10483556
YP_004388384.1	CDS	Alide2_2510	NC_015422.1	2621702	2622283	D	KEGG: dia:Dtpsy_1757 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein	2621702..2622283	Alicycliphilus denitrificans K601	10483557
YP_004388385.1	CDS	Alide2_2511	NC_015422.1	2622348	2624084	R	PFAM: Sulfatase; Domain of unknown function DUF1705; KEGG: ajs:Ajs_1955 sulfatase; sulfatase	complement(2622348..2624084)	Alicycliphilus denitrificans K601	10483558
YP_004388386.1	CDS	Alide2_2512	NC_015422.1	2624089	2624817	R	KEGG: dia:Dtpsy_1755 PAP2 (acid phosphatase) superfamily protein-like protein; PAP2 (acid phosphatase) superfamily protein-like protein	complement(2624089..2624817)	Alicycliphilus denitrificans K601	10483559
YP_004388387.1	CDS	Alide2_2513	NC_015422.1	2624951	2625625	D	KEGG: dia:Dtpsy_1754 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	2624951..2625625	Alicycliphilus denitrificans K601	10483560
YP_004388388.1	CDS	Alide2_2514	NC_015422.1	2625629	2626996	D	KEGG: dia:Dtpsy_1753 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	2625629..2626996	Alicycliphilus denitrificans K601	10483561
YP_004388389.1	CDS	Alide2_2515	NC_015422.1	2627012	2627782	R	PFAM: Crotonase, core; KEGG: bbr:BB4306 putative enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase	complement(2627012..2627782)	Alicycliphilus denitrificans K601	10483562
YP_004388390.1	CDS	Alide2_2516	NC_015422.1	2627787	2628749	R	KEGG: xtr:100486988 UPF0065 protein in tcbD-tcbE intergenic region-like; hypothetical protein	complement(2627787..2628749)	Alicycliphilus denitrificans K601	10483563
YP_004388391.1	CDS	Alide2_2517	NC_015422.1	2628791	2629798	R	KEGG: bbr:BB4304 putative zinc-binding dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NADPH:quinone reductase	complement(2628791..2629798)	Alicycliphilus denitrificans K601	10483564
YP_004388392.1	CDS	Alide2_2518	NC_015422.1	2629798	2631015	R	KEGG: bbr:BB4303 putative racemase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(2629798..2631015)	Alicycliphilus denitrificans K601	10483565
YP_004388393.1	CDS	Alide2_2519	NC_015422.1	2631153	2632322	D	KEGG: xtr:100487140 short-chain specific acyl-CoA dehydrogenase, mitochondrial-like; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	2631153..2632322	Alicycliphilus denitrificans K601	10483566
YP_004388394.1	CDS	Alide2_2520	NC_015422.1	2632339	2633394	D	KEGG: bbr:BB1197 hypothetical protein; hypothetical protein	2632339..2633394	Alicycliphilus denitrificans K601	10483567
YP_004388395.1	CDS	Alide2_2521	NC_015422.1	2633412	2634548	D	KEGG: cti:RALTA_B0352 putative acyl-CoA transferases/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase	2633412..2634548	Alicycliphilus denitrificans K601	10483568
YP_004388396.1	CDS	Alide2_2522	NC_015422.1	2634700	2635341	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: bbr:BB4302 TetR family transcriptional regulator; TetR family transcriptional regulator	2634700..2635341	Alicycliphilus denitrificans K601	10483569
YP_004388397.1	CDS	Alide2_2523	NC_015422.1	2635491	2637206	D	KEGG: xtr:100487291 electron transfer flavoprotein-ubiquinone oxidoreductase-like; PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; FAD dependent oxidoreductase; Electron-transferring-flavoprotein dehydrogenase	2635491..2637206	Alicycliphilus denitrificans K601	10483570
YP_004388398.1	CDS	Alide2_2524	NC_015422.1	2637445	2638413	D	PFAM: ABC transporter substrate binding protein; KEGG: ajs:Ajs_1949 hypothetical protein; ABC transporter substrate-binding protein	2637445..2638413	Alicycliphilus denitrificans K601	10483571
YP_004388399.1	CDS	Alide2_2525	NC_015422.1	2638495	2639382	D	PFAM: ABC transporter permease; KEGG: dac:Daci_4312 inner-membrane translocator; ABC transporter permease	2638495..2639382	Alicycliphilus denitrificans K601	10483572
YP_004388400.1	CDS	Alide2_2526	NC_015422.1	2639395	2640189	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1748 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	2639395..2640189	Alicycliphilus denitrificans K601	10483573
YP_004388401.1	CDS	Alide2_2527	NC_015422.1	2640364	2642289	R	KEGG: azo:azo3875 sigma-54-dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS; sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family	complement(2640364..2642289)	Alicycliphilus denitrificans K601	10483574
YP_004388402.1	CDS	Alide2_2528	NC_015422.1	2642401	2643276	R	PFAM: Alpha/beta hydrolase fold-1; KEGG: vap:Vapar_5337 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein	complement(2642401..2643276)	Alicycliphilus denitrificans K601	10483575
YP_004388403.1	CDS	Alide2_2529	NC_015422.1	2643290	2644870	R	KEGG: azo:azo3873 putative glucase dehydrogenase subunit alpha; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; gluconate 2-dehydrogenase	complement(2643290..2644870)	Alicycliphilus denitrificans K601	10483576
YP_004388404.1	CDS	Alide2_2530	NC_015422.1	2644903	2645484	R	KEGG: azo:azo3872 hypothetical protein; hypothetical protein	complement(2644903..2645484)	Alicycliphilus denitrificans K601	10483577
YP_004388405.1	CDS	Alide2_2531	NC_015422.1	2645541	2646254	R	PFAM: Biotin/lipoate A/B protein ligase; KEGG: azo:azo3871 putative lipoate protein ligase; biotin/lipoate A/B protein ligase	complement(2645541..2646254)	Alicycliphilus denitrificans K601	10483578
YP_004388406.1	CDS	Alide2_2532	NC_015422.1	2646251	2646964	R	KEGG: azo:azo3870 hypothetical protein; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; dihydrolipoyllysine-residue acetyltransferase	complement(2646251..2646964)	Alicycliphilus denitrificans K601	10483579
YP_004388407.1	CDS	Alide2_2533	NC_015422.1	2646961	2647206	R	PFAM: Biotin/lipoyl attachment; KEGG: rfr:Rfer_3967 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein	complement(2646961..2647206)	Alicycliphilus denitrificans K601	10483580
YP_004388408.1	CDS	Alide2_2534	NC_015422.1	2647203	2648240	R	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: rfr:Rfer_3966 transketolase; SMART: Transketolase-like, pyrimidine-binding domain; pyruvate dehydrogenase	complement(2647203..2648240)	Alicycliphilus denitrificans K601	10483581
YP_004388409.1	CDS	Alide2_2535	NC_015422.1	2648266	2649273	R	KEGG: azo:azo3867 acetoin dehydrogenase subunit alpha; PFAM: Dehydrogenase, E1 component; pyruvate dehydrogenase	complement(2648266..2649273)	Alicycliphilus denitrificans K601	10483582
YP_004388410.1	CDS	Alide2_2536	NC_015422.1	2649609	2650070	R	KEGG: dia:Dtpsy_1745 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	complement(2649609..2650070)	Alicycliphilus denitrificans K601	10483583
YP_004388411.1	CDS	Alide2_2537	NC_015422.1	2650356	2651327	D	KEGG: ajs:Ajs_1941 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP	2650356..2651327	Alicycliphilus denitrificans K601	10483584
YP_004388412.1	CDS	Alide2_2538	NC_015422.1	2651403	2651897	D	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1743 tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctQ	2651403..2651897	Alicycliphilus denitrificans K601	10483585
YP_004388413.1	CDS	Alide2_2539	NC_015422.1	2651894	2653171	D	KEGG: dia:Dtpsy_1742 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	2651894..2653171	Alicycliphilus denitrificans K601	10483586
YP_004388414.1	CDS	Alide2_2540	NC_015422.1	2653190	2654257	R	KEGG: bpt:Bpet1117 metallo-beta-lactamase family protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	complement(2653190..2654257)	Alicycliphilus denitrificans K601	10483587
YP_004388415.1	CDS	Alide2_2541	NC_015422.1	2654558	2655721	D	TIGRFAM: Glycine cleavage system T protein; KEGG: xtr:100488488 hypothetical protein LOC100488488; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein	2654558..2655721	Alicycliphilus denitrificans K601	10483588
YP_004388416.1	CDS	Alide2_2542	NC_015422.1	2655808	2656182	D	KEGG: xtr:100488332 glycine cleavage system H protein-like; TIGRFAM: Glycine cleavage H-protein, subgroup; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein	2655808..2656182	Alicycliphilus denitrificans K601	10483589
YP_004388417.1	CDS	Alide2_2543	NC_015422.1	2656311	2659199	D	TIGRFAM: Glycine cleavage system P protein, homodimeric; HAMAP: Glycine cleavage system P protein, homodimeric; KEGG: dia:Dtpsy_1739 glycine dehydrogenase; PFAM: Glycine cleavage system P-protein, N-terminal; glycine dehydrogenase (decarboxylating)	2656311..2659199	Alicycliphilus denitrificans K601	10483590
YP_004388418.1	CDS	Alide2_2544	NC_015422.1	2659358	2659618	D	PFAM: Protein of unknown function DUF156; KEGG: ajs:Ajs_2799 hypothetical protein; hypothetical protein	2659358..2659618	Alicycliphilus denitrificans K601	10483591
YP_004388419.1	CDS	Alide2_2545	NC_015422.1	2659642	2660757	D	KEGG: dia:Dtpsy_2290 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	2659642..2660757	Alicycliphilus denitrificans K601	10483592
YP_004388420.1	CDS	Alide2_2546	NC_015422.1	2660867	2661727	D	TIGRFAM: S-formylglutathione hydrolase; KEGG: ajs:Ajs_2801 carboxylesterase; PFAM: Putative esterase; S-formylglutathione hydrolase	2660867..2661727	Alicycliphilus denitrificans K601	10483593
YP_004388421.1	CDS	Alide2_2547	NC_015422.1	2661738	2661917	R	hypothetical protein	complement(2661738..2661917)	Alicycliphilus denitrificans K601	10483594
YP_004388422.1	CDS	Alide2_2548	NC_015422.1	2661991	2662878	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_2228 transcriptional regulator, LysR family; LysR family transcriptional regulator	2661991..2662878	Alicycliphilus denitrificans K601	10483595
YP_004388423.1	CDS	Alide2_2549	NC_015422.1	2662875	2663993	R	KEGG: ajs:Ajs_2803 radical SAM domain-containing protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; Radical SAM domain-containing protein	complement(2662875..2663993)	Alicycliphilus denitrificans K601	10483596
YP_004388424.1	CDS	Alide2_2550	NC_015422.1	2664269	2664676	D	PFAM: Transcription elongation factor, GreA/GreB, C-terminal; KEGG: ajs:Ajs_2805 GreA/GreB family elongation factor; GreA/GreB family elongation factor	2664269..2664676	Alicycliphilus denitrificans K601	10483597
YP_004388425.1	CDS	Alide2_2551	NC_015422.1	2664723	2665880	R	PFAM: Acyltransferase 3; KEGG: dia:Dtpsy_2295 acyltransferase 3; acyltransferase 3	complement(2664723..2665880)	Alicycliphilus denitrificans K601	10483598
YP_004388426.1	CDS	Alide2_2552	NC_015422.1	2665947	2666903	R	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_2807 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD	complement(2665947..2666903)	Alicycliphilus denitrificans K601	10483599
YP_004388427.1	CDS	Alide2_2553	NC_015422.1	2666982	2668772	R	KEGG: dia:Dtpsy_2297 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, N-terminal, bacteria; butyryl-CoA dehydrogenase	complement(2666982..2668772)	Alicycliphilus denitrificans K601	10483600
YP_004388428.1	CDS	Alide2_2554	NC_015422.1	2668856	2669788	R	KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein subunit alpha	complement(2668856..2669788)	Alicycliphilus denitrificans K601	10483601
YP_004388429.1	CDS	Alide2_2555	NC_015422.1	2669806	2670555	R	KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta	complement(2669806..2670555)	Alicycliphilus denitrificans K601	10483602
YP_004388430.1	CDS	Alide2_2556	NC_015422.1	2670727	2671506	R	PFAM: Crotonase, core; KEGG: ajs:Ajs_2812 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(2670727..2671506)	Alicycliphilus denitrificans K601	10483603
YP_004388431.1	CDS	Alide2_2557	NC_015422.1	2671521	2672480	R	PFAM: Histone deacetylase superfamily; KEGG: ajs:Ajs_2813 histone deacetylase superfamily protein; histone deacetylase superfamily	complement(2671521..2672480)	Alicycliphilus denitrificans K601	10483604
YP_004388432.1	CDS	Alide2_2558	NC_015422.1	2672519	2673439	D	KEGG: dia:Dtpsy_2303 ATPase associated with various cellular activities AAA_3; PFAM: ATPase, AAA-3; SMART: ATPase, AAA+ type, core; ATPase	2672519..2673439	Alicycliphilus denitrificans K601	10483605
YP_004388433.1	CDS	Alide2_2560	NC_015422.1	2674537	2676594	D	KEGG: ajs:Ajs_2816 transglutaminase domain-containing protein; PFAM: Protein of unknown function DUF3488; Transglutaminase-like; SMART: Transglutaminase-like; hypothetical protein	2674537..2676594	Alicycliphilus denitrificans K601	10483607
YP_004388434.1	CDS	Alide2_2561	NC_015422.1	2676591	2677661	D	TIGRFAM: Lytic transglycosylase MltB; KEGG: dia:Dtpsy_2306 lytic murein transglycosylase B; lytic murein transglycosylase B	2676591..2677661	Alicycliphilus denitrificans K601	10483608
YP_004388435.1	CDS	Alide2_2562	NC_015422.1	2677671	2678675	R	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: lch:Lcho_4275 transketolase central region; SMART: Transketolase-like, pyrimidine-binding domain; 1-deoxy-D-xylulose-5-phosphate synthase	complement(2677671..2678675)	Alicycliphilus denitrificans K601	10483609
YP_004388436.1	CDS	Alide2_2563	NC_015422.1	2678690	2679517	R	KEGG: dac:Daci_0728 transketolase domain-containing protein; PFAM: Transketolase, N-terminal; transketolase	complement(2678690..2679517)	Alicycliphilus denitrificans K601	10483610
YP_004388437.1	CDS	Alide2_2564	NC_015422.1	2679540	2680799	R	KEGG: pol:Bpro_1457 TRAP dicarboxylate transporter-DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	complement(2679540..2680799)	Alicycliphilus denitrificans K601	10483611
YP_004388438.1	CDS	Alide2_2565	NC_015422.1	2680796	2681296	R	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: lch:Lcho_0406 tripartite ATP-independent periplasmic transporter DctQ; TRAP dicarboxylate transporter subunit DctQ	complement(2680796..2681296)	Alicycliphilus denitrificans K601	10483612
YP_004388439.1	CDS	Alide2_2566	NC_015422.1	2681351	2682334	R	KEGG: pol:Bpro_1455 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP	complement(2681351..2682334)	Alicycliphilus denitrificans K601	10483613
YP_004388440.1	CDS	Alide2_2567	NC_015422.1	2682371	2683120	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: lch:Lcho_0404 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase	complement(2682371..2683120)	Alicycliphilus denitrificans K601	10483614
YP_004388441.1	CDS	Alide2_2568	NC_015422.1	2683261	2684139	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_1453 LysR family transcriptional regulator; LysR family transcriptional regulator	2683261..2684139	Alicycliphilus denitrificans K601	10483615
YP_004388442.1	CDS	Alide2_2569	NC_015422.1	2684292	2686274	D	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: hse:Hsero_0506 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase	2684292..2686274	Alicycliphilus denitrificans K601	10483616
YP_004388443.1	CDS	Alide2_2570	NC_015422.1	2686289	2687251	D	KEGG: bxe:Bxe_B0983 putative 2-hydroxyacid dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; glycerate dehydrogenase	2686289..2687251	Alicycliphilus denitrificans K601	10483617
YP_004388444.1	CDS	Alide2_2571	NC_015422.1	2687271	2688185	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2307 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2687271..2688185)	Alicycliphilus denitrificans K601	10483618
YP_004388445.1	CDS	Alide2_2572	NC_015422.1	2688300	2689391	D	KEGG: dia:Dtpsy_2308 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0324, bacteria; PFAM: Uncharacterised protein family UPF0324, prokaryote; hypothetical protein	2688300..2689391	Alicycliphilus denitrificans K601	10483619
YP_004388446.1	CDS	Alide2_2573	NC_015422.1	2689393	2690670	R	KEGG: dia:Dtpsy_2309 putative transporter signal peptide protein; hypothetical protein	complement(2689393..2690670)	Alicycliphilus denitrificans K601	10483620
YP_004388447.1	CDS	Alide2_2574	NC_015422.1	2690703	2691515	R	PFAM: Protein of unknown function DUF2242; KEGG: dia:Dtpsy_2310 putative lipoprotein; hypothetical protein	complement(2690703..2691515)	Alicycliphilus denitrificans K601	10483621
YP_004388448.1	CDS	Alide2_2575	NC_015422.1	2691634	2692845	R	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2312 protein of unknown function DUF214; hypothetical protein	complement(2691634..2692845)	Alicycliphilus denitrificans K601	10483622
YP_004388449.1	CDS	Alide2_2576	NC_015422.1	2692842	2693597	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2313 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	complement(2692842..2693597)	Alicycliphilus denitrificans K601	10483623
YP_004388450.1	CDS	Alide2_2577	NC_015422.1	2693594	2694943	R	KEGG: dia:Dtpsy_2314 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	complement(2693594..2694943)	Alicycliphilus denitrificans K601	10483624
YP_004388451.1	CDS	Alide2_2578	NC_015422.1	2694940	2696346	R	KEGG: dia:Dtpsy_2315 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	complement(2694940..2696346)	Alicycliphilus denitrificans K601	10483625
YP_004388452.1	CDS	Alide2_2579	NC_015422.1	2696469	2697512	R	TIGRFAM: Peptidase M22, glycoprotease, subgroup; Peptidase M22, O-sialoglycoprotein peptidase; KEGG: dia:Dtpsy_2317 putative DNA-binding/iron metalloprotein/AP endonuclease; PFAM: Peptidase M22, glycoprotease; metalloendopeptidase, glycoprotease family	complement(2696469..2697512)	Alicycliphilus denitrificans K601	10483626
YP_004388453.1	CDS	Alide2_2580	NC_015422.1	2697535	2697972	R	KEGG: dia:Dtpsy_2323 putative signal transduction protein with CBS domains; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; putative signal transduction protein with CBS domains	complement(2697535..2697972)	Alicycliphilus denitrificans K601	10483627
YP_004388454.1	CDS	Alide2_2581	NC_015422.1	2698057	2698698	R	KEGG: dia:Dtpsy_2324 calcium-binding EF-hand-containing protein; calcium-binding EF-hand-containing protein	complement(2698057..2698698)	Alicycliphilus denitrificans K601	10483628
YP_004388455.1	CDS	Alide2_2582	NC_015422.1	2699101	2700339	D	KEGG: aav:Aave_2112 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	2699101..2700339	Alicycliphilus denitrificans K601	10483629
YP_004388456.1	CDS	Alide2_2583	NC_015422.1	2700349	2703492	D	KEGG: dia:Dtpsy_2326 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter	2700349..2703492	Alicycliphilus denitrificans K601	10483630
YP_004388457.1	CDS	Alide2_2584	NC_015422.1	2703489	2704997	D	KEGG: dia:Dtpsy_2327 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	2703489..2704997	Alicycliphilus denitrificans K601	10483631
YP_004388458.1	CDS	Alide2_2585	NC_015422.1	2705251	2707701	D	TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; KEGG: ajs:Ajs_2839 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; PFAM: Nitrite/sulphite reductase 4Fe-4S domain; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite reductase (NAD(P)H), large subunit	2705251..2707701	Alicycliphilus denitrificans K601	10483632
YP_004388459.1	CDS	Alide2_2586	NC_015422.1	2707774	2708151	D	KEGG: ajs:Ajs_2840 assimilatory nitrite reductase (NAD(P)H) small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H), small subunit	2707774..2708151	Alicycliphilus denitrificans K601	10483633
YP_004388460.1	CDS	Alide2_2587	NC_015422.1	2708148	2710940	D	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase, Fe4S4 domain; Molydopterin dinucleotide-binding domain; BFD-like [2Fe-2S]-binding domain; KEGG: ajs:Ajs_2841 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; SMART: Molybdopterin oxidoreductase, Fe4S4 domain; Nitrate reductase	2708148..2710940	Alicycliphilus denitrificans K601	10483634
YP_004388461.1	CDS	Alide2_2588	NC_015422.1	2710991	2712214	D	PFAM: Major facilitator superfamily MFS-1; KEGG: pol:Bpro_3273 major facilitator transporter; major facilitator superfamily protein	2710991..2712214	Alicycliphilus denitrificans K601	10483635
YP_004388462.1	CDS	Alide2_2589	NC_015422.1	2712254	2712829	R	PFAM: SNARE associated Golgi protein; KEGG: net:Neut_2429 hypothetical protein; hypothetical protein	complement(2712254..2712829)	Alicycliphilus denitrificans K601	10483636
YP_004388463.1	CDS	Alide2_2590	NC_015422.1	2712965	2713933	D	PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: ajs:Ajs_2842 glycosyl transferase family protein; glycosyl transferase, family 3	2712965..2713933	Alicycliphilus denitrificans K601	10483637
YP_004388464.1	CDS	Alide2_2591	NC_015422.1	2713930	2714691	D	TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; KEGG: ajs:Ajs_2843 uroporphyrinogen-III C-methyltransferase; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase	2713930..2714691	Alicycliphilus denitrificans K601	10483638
YP_004388465.1	CDS	Alide2_2592	NC_015422.1	2714692	2715201	R	PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_2333 thioesterase superfamily protein; thioesterase superfamily protein	complement(2714692..2715201)	Alicycliphilus denitrificans K601	10483639
YP_004388466.1	CDS	Alide2_2593	NC_015422.1	2715266	2716507	D	KEGG: dia:Dtpsy_2335 HI0933 family protein; TIGRFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; hypothetical protein	2715266..2716507	Alicycliphilus denitrificans K601	10483640
YP_004388467.1	CDS	Alide2_2594	NC_015422.1	2716618	2717829	D	PFAM: NnrS; KEGG: ajs:Ajs_2847 NnrS family protein; NnrS family protein	2716618..2717829	Alicycliphilus denitrificans K601	10483641
YP_004388468.1	CDS	Alide2_2595	NC_015422.1	2717882	2718166	D	PFAM: Protein of unknown function DUF2249; KEGG: dia:Dtpsy_2337 hypothetical protein; hypothetical protein	2717882..2718166	Alicycliphilus denitrificans K601	10483642
YP_004388469.1	CDS	Alide2_2596	NC_015422.1	2718236	2718790	R	KEGG: dia:Dtpsy_2338 FeS assembly SUF system protein SufT; TIGRFAM: FeS assembly SUF system protein SufT, putative; PFAM: Domain of unknown function DUF59; FeS assembly SUF system protein SufT	complement(2718236..2718790)	Alicycliphilus denitrificans K601	10483643
YP_004388470.1	CDS	Alide2_2597	NC_015422.1	2718787	2719251	R	KEGG: dia:Dtpsy_2339 SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS cluster assembly, SufU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; SUF system FeS assembly protein, NifU family	complement(2718787..2719251)	Alicycliphilus denitrificans K601	10483644
YP_004388471.1	CDS	Alide2_2598	NC_015422.1	2719248	2720528	R	TIGRFAM: Cysteine desulfurase, SufS; KEGG: ajs:Ajs_2851 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase, SufS subfamily	complement(2719248..2720528)	Alicycliphilus denitrificans K601	10483645
YP_004388472.1	CDS	Alide2_2599	NC_015422.1	2720521	2721756	R	PFAM: SUF system FeS cluster assembly, SufBD; KEGG: ajs:Ajs_2852 SufBD protein; SufBD protein	complement(2720521..2721756)	Alicycliphilus denitrificans K601	10483646
YP_004388473.1	CDS	Alide2_2600	NC_015422.1	2721761	2722534	R	TIGRFAM: ATPase SufC, SUF system FeS cluster assembly; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2342 FeS assembly ATPase SufC; SMART: ATPase, AAA+ type, core; FeS assembly ATPase SufC	complement(2721761..2722534)	Alicycliphilus denitrificans K601	10483647
YP_004388474.1	CDS	Alide2_2601	NC_015422.1	2722605	2724107	R	KEGG: dia:Dtpsy_2343 cysteine desulfurase activator complex subunit SufB; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: SUF system FeS cluster assembly, SufBD; FeS assembly protein SufB	complement(2722605..2724107)	Alicycliphilus denitrificans K601	10483648
YP_004388475.1	CDS	Alide2_2602	NC_015422.1	2724386	2724598	D	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: vap:Vapar_3540 30S ribosomal protein S21; PFAM: Ribosomal protein S21; 30S ribosomal protein S21	2724386..2724598	Alicycliphilus denitrificans K601	10483649
YP_004388476.1	CDS	Alide2_2603	NC_015422.1	2724684	2725130	D	KEGG: aav:Aave_2091 GatB/YqeY domain-containing protein; GatB/YqeY domain-containing protein	2724684..2725130	Alicycliphilus denitrificans K601	10483650
YP_004388477.1	CDS	Alide2_2604	NC_015422.1	2725144	2726535	R	PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: ajs:Ajs_1963 metal dependent phosphohydrolase; metal dependent phosphohydrolase	complement(2725144..2726535)	Alicycliphilus denitrificans K601	10483651
YP_004388478.1	CDS	Alide2_2605	NC_015422.1	2726686	2727324	R	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_1763 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B	complement(2726686..2727324)	Alicycliphilus denitrificans K601	10483652
YP_004388479.1	CDS	Alide2_2606	NC_015422.1	2727328	2728035	R	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: pna:Pnap_2658 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A	complement(2727328..2728035)	Alicycliphilus denitrificans K601	10483653
YP_004388480.1	CDS	Alide2_2607	NC_015422.1	2728119	2728664	D	TIGRFAM: PAS; PFAM: Transcription regulator LuxR, C-terminal; PAS fold; KEGG: dia:Dtpsy_1761 transcriptional regulator, LuxR family; SMART: Transcription regulator LuxR, C-terminal; PAS; LuxR family transcriptional regulator	2728119..2728664	Alicycliphilus denitrificans K601	10483654
YP_004388481.1	CDS	Alide2_2608	NC_015422.1	2728802	2730043	D	PFAM: Acyltransferase 3; KEGG: ajs:Ajs_2326 acyltransferase 3; acyltransferase 3	2728802..2730043	Alicycliphilus denitrificans K601	10483655
YP_004388482.1	CDS	Alide2_2609	NC_015422.1	2730270	2731616	D	KEGG: ajs:Ajs_2327 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase (GNAT) domain; amino-acid N-acetyltransferase	2730270..2731616	Alicycliphilus denitrificans K601	10483656
YP_004388483.1	CDS	Alide2_2610	NC_015422.1	2732094	2732441	D	PFAM: Endoribonuclease L-PSP; KEGG: bam:Bamb_3393 endoribonuclease L-PSP; endoribonuclease L-PSP	2732094..2732441	Alicycliphilus denitrificans K601	10483657
YP_004388484.1	CDS	Alide2_2611	NC_015422.1	2732468	2733712	D	KEGG: bam:Bamb_3394 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase	2732468..2733712	Alicycliphilus denitrificans K601	10483658
YP_004388485.1	CDS	Alide2_2612	NC_015422.1	2733709	2734485	D	PFAM: Asp/Glu/hydantoin racemase; KEGG: vei:Veis_4472 Asp/Glu racemase; Asp/Glu/hydantoin racemase	2733709..2734485	Alicycliphilus denitrificans K601	10483659
YP_004388486.1	CDS	Alide2_2613	NC_015422.1	2734547	2735680	D	PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4471 extracellular ligand-binding receptor; extracellular ligand-binding receptor	2734547..2735680	Alicycliphilus denitrificans K601	10483660
YP_004388487.1	CDS	Alide2_2614	NC_015422.1	2735736	2736629	D	PFAM: ABC transporter permease; KEGG: vei:Veis_4470 inner-membrane translocator; ABC transporter permease	2735736..2736629	Alicycliphilus denitrificans K601	10483661
YP_004388488.1	CDS	Alide2_2615	NC_015422.1	2736622	2737509	D	PFAM: ABC transporter permease; KEGG: vei:Veis_4469 inner-membrane translocator; ABC transporter permease	2736622..2737509	Alicycliphilus denitrificans K601	10483662
YP_004388489.1	CDS	Alide2_2616	NC_015422.1	2737506	2738288	D	PFAM: ABC transporter-like; KEGG: vei:Veis_4468 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	2737506..2738288	Alicycliphilus denitrificans K601	10483663
YP_004388490.1	CDS	Alide2_2617	NC_015422.1	2738288	2739007	D	PFAM: ABC transporter-like; KEGG: vei:Veis_4467 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase	2738288..2739007	Alicycliphilus denitrificans K601	10483664
YP_004388491.1	CDS	Alide2_2618	NC_015422.1	2739031	2740152	D	PFAM: Extracellular ligand-binding receptor; KEGG: bcm:Bcenmc03_6241 extracellular ligand-binding receptor; extracellular ligand-binding receptor	2739031..2740152	Alicycliphilus denitrificans K601	10483665
YP_004388492.1	CDS	Alide2_2619	NC_015422.1	2740217	2741125	R	KEGG: tbd:Tbd_1098 dihydrodipicolinate synthase; TIGRFAM: Dihydrodipicolinate synthase subfamily; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase	complement(2740217..2741125)	Alicycliphilus denitrificans K601	10483666
YP_004388493.1	CDS	Alide2_2620	NC_015422.1	2741244	2744690	R	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; KEGG: xau:Xaut_0390 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase	complement(2741244..2744690)	Alicycliphilus denitrificans K601	10483667
YP_004388494.1	CDS	Alide2_2621	NC_015422.1	2744907	2745689	D	KEGG: vei:Veis_4063 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	2744907..2745689	Alicycliphilus denitrificans K601	10483668
YP_004388495.1	CDS	Alide2_2622	NC_015422.1	2745717	2747342	R	KEGG: dar:Daro_3357 hypothetical protein; PFAM: GAF; Metal-dependent phosphohydrolase, HD subdomain; SMART: GAF; Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase with GAF sensor	complement(2745717..2747342)	Alicycliphilus denitrificans K601	10483669
YP_004388496.1	CDS	Alide2_2623	NC_015422.1	2747458	2747967	R	KEGG: dia:Dtpsy_1523 disulphide bond formation protein DsbB; HAMAP: Disulphide bond formation protein DsbB; PFAM: Disulphide bond formation protein DsbB/BdbC; Disulfide bond formation protein B	complement(2747458..2747967)	Alicycliphilus denitrificans K601	10483670
YP_004388497.1	CDS	Alide2_2624	NC_015422.1	2748029	2749156	R	SMART: ATPase, AAA+ type, core; TIGRFAM: Sulphate transport system permease protein 1; KEGG: dia:Dtpsy_1522 sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; sulfate ABC transporter ATPase	complement(2748029..2749156)	Alicycliphilus denitrificans K601	10483671
YP_004388498.1	CDS	Alide2_2625	NC_015422.1	2749191	2750084	R	KEGG: xtr:100493368 sulfate transport system permease protein cysW-like; TIGRFAM: Sulphate ABC transporter, permease protein CysW; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter inner membrane subunit CysW	complement(2749191..2750084)	Alicycliphilus denitrificans K601	10483672
YP_004388499.1	CDS	Alide2_2626	NC_015422.1	2750081	2750947	R	KEGG: xtr:100493198 probable sulfate transport system permease protein cysT-like; TIGRFAM: Sulphate ABC transporter, permease protein CysT; Sulphate ABC transporter permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter inner membrane subunit CysT	complement(2750081..2750947)	Alicycliphilus denitrificans K601	10483673
YP_004388500.1	CDS	Alide2_2627	NC_015422.1	2750952	2751953	R	KEGG: dia:Dtpsy_1519 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter periplasmic sulfate-binding protein	complement(2750952..2751953)	Alicycliphilus denitrificans K601	10483674
YP_004388501.1	CDS	Alide2_2628	NC_015422.1	2752062	2752652	R	PFAM: Protein of unknown function DUF1234; KEGG: aav:Aave_2544 hypothetical protein; hypothetical protein	complement(2752062..2752652)	Alicycliphilus denitrificans K601	10483675
YP_004388502.1	CDS	Alide2_2629	NC_015422.1	2752740	2753657	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1518 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2752740..2753657)	Alicycliphilus denitrificans K601	10483676
YP_004388503.1	CDS	Alide2_2630	NC_015422.1	2753785	2754435	D	PFAM: Flavodoxin-like fold; KEGG: dia:Dtpsy_1517 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone)	2753785..2754435	Alicycliphilus denitrificans K601	10483677
YP_004388504.1	CDS	Alide2_2631	NC_015422.1	2754493	2755089	R	PFAM: NADPH-dependent FMN reductase; KEGG: dia:Dtpsy_1516 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase	complement(2754493..2755089)	Alicycliphilus denitrificans K601	10483678
YP_004388505.1	CDS	Alide2_2632	NC_015422.1	2755136	2755936	R	KEGG: dia:Dtpsy_1515 lipoprotein, YaeC family; TIGRFAM: Lipoprotein YaeC; PFAM: NLPA lipoprotein; lipoprotein, YaeC family	complement(2755136..2755936)	Alicycliphilus denitrificans K601	10483679
YP_004388506.1	CDS	Alide2_2633	NC_015422.1	2756042	2756707	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_1513 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(2756042..2756707)	Alicycliphilus denitrificans K601	10483680
YP_004388507.1	CDS	Alide2_2634	NC_015422.1	2756707	2757750	R	PFAM: ABC transporter-like; NIL domain; KEGG: dia:Dtpsy_1512 DL-methionine transporter ATP-binding subunit; SMART: NIL domain; ATPase, AAA+ type, core; phosphonate-transporting ATPase	complement(2756707..2757750)	Alicycliphilus denitrificans K601	10483681
YP_004388508.1	CDS	Alide2_2635	NC_015422.1	2757859	2758248	R	PFAM: Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein; KEGG: ajs:Ajs_2347 membrane protein-like protein; eicosanoid and glutathione metabolism membrane-associated protein	complement(2757859..2758248)	Alicycliphilus denitrificans K601	10483682
YP_004388509.1	CDS	Alide2_2636	NC_015422.1	2758259	2758849	R	KEGG: dia:Dtpsy_1509 recombination protein RecR; TIGRFAM: RecR protein; SMART: Toprim domain; Helix-hairpin-helix DNA-binding motif, class 1; recombination protein RecR	complement(2758259..2758849)	Alicycliphilus denitrificans K601	10483683
YP_004388510.1	CDS	Alide2_2637	NC_015422.1	2758869	2759201	R	KEGG: ctt:CtCNB1_1631 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0133; PFAM: Uncharacterised protein family UPF0133; hypothetical protein	complement(2758869..2759201)	Alicycliphilus denitrificans K601	10483684
YP_004388511.1	CDS	Alide2_2638	NC_015422.1	2759233	2761089	R	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA polymerase III, subunit gamma/ tau; KEGG: dia:Dtpsy_1507 DNA polymerase III, subunits gamma and tau; PFAM: DNA polymerase III, gamma subunit, domain III; ATPase, AAA-type, core; DNA polymerase III subunits gamma and tau	complement(2759233..2761089)	Alicycliphilus denitrificans K601	10483685
YP_004388512.1	CDS	Alide2_2639	NC_015422.1	2761272	2762099	R	KEGG: gpb:HDN1F_09840 molybdopterin-binding protein; TIGRFAM: Molybdenum-binding protein, N-terminal; Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR; ModE family transcriptional regulator	complement(2761272..2762099)	Alicycliphilus denitrificans K601	10483687
YP_004388513.1	CDS	Alide2_2640	NC_015422.1	2762136	2762987	R	TIGRFAM: Putative molybdenum utilization protein ModD; KEGG: cli:Clim_0375 ModD protein; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal; modD protein	complement(2762136..2762987)	Alicycliphilus denitrificans K601	10483688
YP_004388514.1	CDS	Alide2_2641	NC_015422.1	2762984	2763646	R	KEGG: dac:Daci_3882 binding-protein-dependent transport systems inner membrane component; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit	complement(2762984..2763646)	Alicycliphilus denitrificans K601	10483689
YP_004388515.1	CDS	Alide2_2642	NC_015422.1	2763647	2764363	R	TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; KEGG: dac:Daci_3883 molybdenum ABC transporter periplasmic molybdate-binding protein; molybdenum ABC transporter substrate-binding protein	complement(2763647..2764363)	Alicycliphilus denitrificans K601	10483690
YP_004388516.1	CDS	Alide2_2643	NC_015422.1	2764375	2765178	R	PFAM: Protein of unknown function DUF364; KEGG: mta:Moth_1420 hypothetical protein; hypothetical protein	complement(2764375..2765178)	Alicycliphilus denitrificans K601	10483691
YP_004388517.1	CDS	Alide2_2644	NC_015422.1	2765172	2765966	R	PFAM: Methyltransferase type 11; KEGG: bpt:Bpet1277 hypothetical protein; type 11 methyltransferase	complement(2765172..2765966)	Alicycliphilus denitrificans K601	10483692
YP_004388518.1	CDS	Alide2_2645	NC_015422.1	2765963	2766724	R	PFAM: ABC transporter-like; KEGG: dac:Daci_4650 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; iron-chelate-transporting ATPase	complement(2765963..2766724)	Alicycliphilus denitrificans K601	10483693
YP_004388519.1	CDS	Alide2_2646	NC_015422.1	2766721	2767719	R	PFAM: ABC transporter permease protein; KEGG: dac:Daci_4649 transport system permease; ABC transporter permease	complement(2766721..2767719)	Alicycliphilus denitrificans K601	10483694
YP_004388520.1	CDS	Alide2_2647	NC_015422.1	2767778	2768812	R	PFAM: Periplasmic binding protein; KEGG: ctt:CtCNB1_0597 periplasmic binding protein; ABC transporter substrate-binding protein	complement(2767778..2768812)	Alicycliphilus denitrificans K601	10483695
YP_004388521.1	CDS	Alide2_2648	NC_015422.1	2768809	2769348	R	PFAM: Protein of unknown function DUF2478; KEGG: bpt:Bpet1276 hypothetical protein; hypothetical protein	complement(2768809..2769348)	Alicycliphilus denitrificans K601	10483696
YP_004388522.1	CDS	Alide2_2649	NC_015422.1	2769428	2771407	R	PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: ctt:CtCNB1_0594 TonB-dependent receptor; TonB-dependent receptor plug	complement(2769428..2771407)	Alicycliphilus denitrificans K601	10483697
YP_004388523.1	CDS	Alide2_2650	NC_015422.1	2771696	2772286	D	KEGG: dia:Dtpsy_1506 hypothetical protein; hypothetical protein	2771696..2772286	Alicycliphilus denitrificans K601	10483698
YP_004388524.1	CDS	Alide2_2651	NC_015422.1	2772268	2773644	R	KEGG: dia:Dtpsy_1505 HI0933 family protein; TIGRFAM: Conserved hyptotheical protein CHP03862, flavoprotein, PP4765; Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; PFAM: Conserved hypothetical protein CHP00275, flavoprotein HI0933-like; hypothetical protein	complement(2772268..2773644)	Alicycliphilus denitrificans K601	10483699
YP_004388525.1	CDS	Alide2_2652	NC_015422.1	2773885	2774769	D	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: bpe:BP2937 hypothetical protein; Pirin domain-containing protein	2773885..2774769	Alicycliphilus denitrificans K601	10483700
YP_004388526.1	CDS	Alide2_2653	NC_015422.1	2774855	2775736	D	PFAM: Pirin, N-terminal; Pirin, C-terminal; KEGG: pag:PLES_41041 putative pirin protein; Pirin domain-containing protein	2774855..2775736	Alicycliphilus denitrificans K601	10483701
YP_004388527.1	CDS	Alide2_2654	NC_015422.1	2775743	2779030	R	PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_1503 UvrD/REP helicase; UvrD/REP helicase	complement(2775743..2779030)	Alicycliphilus denitrificans K601	10483702
YP_004388528.1	CDS	Alide2_2655	NC_015422.1	2779023	2781590	R	KEGG: ajs:Ajs_2356 exonuclease-like protein; exonuclease-like protein	complement(2779023..2781590)	Alicycliphilus denitrificans K601	10483703
YP_004388529.1	CDS	Alide2_2656	NC_015422.1	2781693	2782025	D	KEGG: vap:Vapar_2323 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin	2781693..2782025	Alicycliphilus denitrificans K601	10483704
YP_004388530.1	CDS	Alide2_2657	NC_015422.1	2782252	2783514	D	TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, N-terminal; Rho termination factor, RNA-binding; KEGG: ajs:Ajs_2358 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; Rho termination factor, N-terminal; transcription termination factor Rho	2782252..2783514	Alicycliphilus denitrificans K601	10483705
YP_004388531.1	CDS	Alide2_2658	NC_015422.1	2783601	2783855	D	KEGG: dia:Dtpsy_1495 ribosomal protein L31; TIGRFAM: Ribosomal protein L31; PFAM: Ribosomal protein L31; 50S ribosomal protein L31	2783601..2783855	Alicycliphilus denitrificans K601	10483706
YP_004388532.1	CDS	Alide2_2659	NC_015422.1	2783994	2785688	D	KEGG: ajs:Ajs_2364 putative inner membrane transmembrane protein; putative inner membrane transmembrane protein	2783994..2785688	Alicycliphilus denitrificans K601	10483707
YP_004388533.1	CDS	Alide2_2660	NC_015422.1	2785688	2787046	D	KEGG: ajs:Ajs_2365 MATE efflux family protein; TIGRFAM: Multi antimicrobial extrusion protein; PFAM: Multi antimicrobial extrusion protein; MATE efflux family protein	2785688..2787046	Alicycliphilus denitrificans K601	10483708
YP_004388534.1	CDS	Alide2_2661	NC_015422.1	2787009	2788385	R	TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_1492 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase	complement(2787009..2788385)	Alicycliphilus denitrificans K601	10483709
YP_004388535.1	CDS	Alide2_2662	NC_015422.1	2788453	2789154	R	TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB; PFAM: Signal transduction response regulator, C-terminal; Signal transduction response regulator, receiver domain; KEGG: ajs:Ajs_2367 two component transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component transcriptional regulator PhoB	complement(2788453..2789154)	Alicycliphilus denitrificans K601	10483710
YP_004388536.1	CDS	Alide2_2663	NC_015422.1	2789151	2789852	R	KEGG: ajs:Ajs_2368 phosphate uptake regulator, PhoU; TIGRFAM: PhoU; PFAM: PhoU; phosphate uptake regulator PhoU	complement(2789151..2789852)	Alicycliphilus denitrificans K601	10483711
YP_004388537.1	CDS	Alide2_2664	NC_015422.1	2789849	2790637	R	SMART: ATPase, AAA+ type, core; K Homology; TIGRFAM: Phosphate transport system permease protein 1; KEGG: aav:Aave_2629 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; phosphate ABC transporter ATPase	complement(2789849..2790637)	Alicycliphilus denitrificans K601	10483712
YP_004388538.1	CDS	Alide2_2665	NC_015422.1	2790668	2791549	R	KEGG: ajs:Ajs_2370 phosphate transporter permease subunit PtsA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease	complement(2790668..2791549)	Alicycliphilus denitrificans K601	10483713
YP_004388539.1	CDS	Alide2_2666	NC_015422.1	2791546	2792568	R	KEGG: dia:Dtpsy_1487 phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease	complement(2791546..2792568)	Alicycliphilus denitrificans K601	10483714
YP_004388540.1	CDS	Alide2_2667	NC_015422.1	2792632	2793672	R	KEGG: dia:Dtpsy_1486 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein	complement(2792632..2793672)	Alicycliphilus denitrificans K601	10483715
YP_004388541.1	CDS	Alide2_2668	NC_015422.1	2793932	2795413	D	KEGG: dia:Dtpsy_1483 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase	2793932..2795413	Alicycliphilus denitrificans K601	10483716
YP_004388542.1	CDS	Alide2_2669	NC_015422.1	2795490	2795951	R	KEGG: ajs:Ajs_2377 phosphohistidine phosphatase, SixA; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; putative phosphohistidine phosphatase, SixA	complement(2795490..2795951)	Alicycliphilus denitrificans K601	10483717
YP_004388543.1	CDS	Alide2_2670	NC_015422.1	2795951	2798125	R	PFAM: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; HAMAP: Polyphosphate kinase; KEGG: dia:Dtpsy_1480 polyphosphate kinase; polyphosphate kinase	complement(2795951..2798125)	Alicycliphilus denitrificans K601	10483718
YP_004388544.1	CDS	Alide2_2671	NC_015422.1	2798388	2799206	R	KEGG: dia:Dtpsy_1479 ornithine-acyl(acyl carrier protein) N-acyltransferase; ornithine-acyl(acyl carrier protein) N-acyltransferase	complement(2798388..2799206)	Alicycliphilus denitrificans K601	10483719
YP_004388545.1	CDS	Alide2_2672	NC_015422.1	2799446	2801239	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: ajs:Ajs_2380 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	2799446..2801239	Alicycliphilus denitrificans K601	10483720
YP_004388546.1	CDS	Alide2_2673	NC_015422.1	2801331	2802665	R	TIGRFAM: Phosphoglucosamine mutase; KEGG: dia:Dtpsy_1477 phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, C-terminal; phosphoglucosamine mutase	complement(2801331..2802665)	Alicycliphilus denitrificans K601	10483721
YP_004388547.1	CDS	Alide2_2674	NC_015422.1	2802655	2803551	R	TIGRFAM: Dihydropteroate synthase; KEGG: ajs:Ajs_2382 dihydropteroate synthase; PFAM: Pterin-binding; dihydropteroate synthase	complement(2802655..2803551)	Alicycliphilus denitrificans K601	10483722
YP_004388548.1	CDS	Alide2_2675	NC_015422.1	2803620	2805581	R	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: dia:Dtpsy_1475 ATP-dependent metalloprotease FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; ATP-dependent metalloprotease FtsH	complement(2803620..2805581)	Alicycliphilus denitrificans K601	10483723
YP_004388549.1	CDS	Alide2_2676	NC_015422.1	2805679	2806341	R	PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dia:Dtpsy_1474 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ	complement(2805679..2806341)	Alicycliphilus denitrificans K601	10483724
YP_004388550.1	CDS	Alide2_2677	NC_015422.1	2806362	2806832	D	PFAM: RNA-binding, CRM domain; KEGG: dia:Dtpsy_1473 protein of unknown function UPF0044; hypothetical protein	2806362..2806832	Alicycliphilus denitrificans K601	10483725
YP_004388551.1	CDS	Alide2_2678	NC_015422.1	2806832	2807575	D	KEGG: dac:Daci_4928 hypothetical protein; hypothetical protein	2806832..2807575	Alicycliphilus denitrificans K601	10483726
YP_004388552.1	CDS	Alide2_2679	NC_015422.1	2807576	2807983	R	KEGG: ajs:Ajs_2388 hypothetical protein; hypothetical protein	complement(2807576..2807983)	Alicycliphilus denitrificans K601	10483727
YP_004388553.1	CDS	Alide2_2680	NC_015422.1	2807986	2808462	R	KEGG: dia:Dtpsy_1469 transcription elongation factor GreA; TIGRFAM: Transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreA	complement(2807986..2808462)	Alicycliphilus denitrificans K601	10483728
YP_004388554.1	CDS	Alide2_2681	NC_015422.1	2808589	2811840	R	SMART: Methylglyoxal synthase-like domain; TIGRFAM: Carbamoyl-phosphate synthase, large subunit; KEGG: dia:Dtpsy_1458 carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthetase, large subunit, oligomerisation; Methylglyoxal synthase-like domain; Carbamoyl-phosphate synthase, large subunit, N-terminal; carbamoyl-phosphate synthase, large subunit	complement(2808589..2811840)	Alicycliphilus denitrificans K601	10483729
YP_004388555.1	CDS	Alide2_2682	NC_015422.1	2811840	2813018	R	TIGRFAM: Carbamoyl-phosphate synthase, small subunit; KEGG: aav:Aave_2610 carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; carbamoyl-phosphate synthase, small subunit	complement(2811840..2813018)	Alicycliphilus denitrificans K601	10483730
YP_004388556.1	CDS	Alide2_2683	NC_015422.1	2813518	2814939	D	PFAM: Integrase, catalytic core, phage; KEGG: dar:Daro_2526 phage integrase; integrase family protein	2813518..2814939	Alicycliphilus denitrificans K601	10483731
YP_004388557.1	CDS	Alide2_2684	NC_015422.1	2815145	2815390	D	PFAM: Prophage CP4-57 regulatory; Prophage CP4-57 regulatory protein	2815145..2815390	Alicycliphilus denitrificans K601	10483732
YP_004388558.1	CDS	Alide2_2685	NC_015422.1	2815527	2815850	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	2815527..2815850	Alicycliphilus denitrificans K601	10483733
YP_004388559.1	CDS	Alide2_2687	NC_015422.1	2816797	2818170	R	KEGG: sfu:Sfum_1898 hypothetical protein; hypothetical protein	complement(2816797..2818170)	Alicycliphilus denitrificans K601	10483735
YP_004388560.1	CDS	Alide2_2688	NC_015422.1	2818476	2819978	D	PFAM: Integrase, catalytic core, phage; KEGG: ppu:PP_2501 phage integrase, putative; integrase family protein	2818476..2819978	Alicycliphilus denitrificans K601	10483736
YP_004388561.1	CDS	Alide2_2689	NC_015422.1	2820227	2820958	R	KEGG: pwa:Pecwa_1723 hypothetical protein; hypothetical protein	complement(2820227..2820958)	Alicycliphilus denitrificans K601	10483737
YP_004388562.1	CDS	Alide2_2690	NC_015422.1	2820960	2821943	R	PFAM: ATP-grasp fold, RimK-type; KEGG: psb:Psyr_2651 hypothetical protein; RimK domain-containing protein ATP-grasp	complement(2820960..2821943)	Alicycliphilus denitrificans K601	10483738
YP_004388563.1	CDS	Alide2_2691	NC_015422.1	2821952	2822323	R	KEGG: pwa:Pecwa_1721 hypothetical protein; hypothetical protein	complement(2821952..2822323)	Alicycliphilus denitrificans K601	10483739
YP_004388564.1	CDS	Alide2_2692	NC_015422.1	2822467	2822904	R	hypothetical protein	complement(2822467..2822904)	Alicycliphilus denitrificans K601	10483740
YP_004388565.1	CDS	Alide2_2693	NC_015422.1	2823025	2824521	R	KEGG: rcu:RCOM_1905080 hypothetical protein; hypothetical protein	complement(2823025..2824521)	Alicycliphilus denitrificans K601	10483741
YP_004388566.1	CDS	Alide2_2695	NC_015422.1	2824949	2825182	R	KEGG: dze:Dd1591_3709 phage transcriptional regulator, AlpA; manually curated; PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA	complement(2824949..2825182)	Alicycliphilus denitrificans K601	10483743
YP_004388567.1	CDS	Alide2_2696	NC_015422.1	2825746	2827503	R	PFAM: DNA helicase, UvrD/REP type; KEGG: rpf:Rpic12D_4971 DNA helicase II; UvrD/REP helicase	complement(2825746..2827503)	Alicycliphilus denitrificans K601	10483744
YP_004388568.1	CDS	Alide2_2697	NC_015422.1	2827485	2829509	R	KEGG: rpf:Rpic12D_4970 ATP-dependent OLD family endonuclease; ATP-dependent OLD family endonuclease	complement(2827485..2829509)	Alicycliphilus denitrificans K601	10483745
YP_004388569.1	CDS	Alide2_2698	NC_015422.1	2829506	2829718	R	PFAM: Histone-like bacterial DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein; histone family protein DNA-binding protein	complement(2829506..2829718)	Alicycliphilus denitrificans K601	10483746
YP_004388570.1	CDS	Alide2_2700	NC_015422.1	2830032	2830298	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1457 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	2830032..2830298	Alicycliphilus denitrificans K601	10483748
YP_004388571.1	CDS	Alide2_2701	NC_015422.1	2830331	2831161	D	PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit	2830331..2831161	Alicycliphilus denitrificans K601	10483749
YP_004388572.1	CDS	Alide2_2703	NC_015422.1	2832197	2832817	R	PFAM: Methyltransferase type 12; KEGG: pol:Bpro_4843 methyltransferase type 12; type 12 methyltransferase	complement(2832197..2832817)	Alicycliphilus denitrificans K601	10483751
YP_004388573.1	CDS	Alide2_2705	NC_015422.1	2833618	2833965	R	PFAM: Copper binding periplasmic protein CusF; KEGG: ajs:Ajs_2667 hypothetical protein; copper binding periplasmic protein cusF	complement(2833618..2833965)	Alicycliphilus denitrificans K601	10483753
YP_004388574.1	CDS	Alide2_2706	NC_015422.1	2834045	2834536	R	PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2668 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein	complement(2834045..2834536)	Alicycliphilus denitrificans K601	10483754
YP_004388575.1	CDS	Alide2_2707	NC_015422.1	2834570	2835982	R	PFAM: Multicopper oxidase, type 3; Multicopper oxidase, type 2; KEGG: ajs:Ajs_2669 multicopper oxidase, type 3; multicopper oxidase type 3	complement(2834570..2835982)	Alicycliphilus denitrificans K601	10483755
YP_004388576.1	CDS	Alide2_2708	NC_015422.1	2835999	2837429	R	PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_2670 putative copper resistance-related lipoprotein; outer membrane efflux protein	complement(2835999..2837429)	Alicycliphilus denitrificans K601	10483756
YP_004388577.1	CDS	Alide2_2709	NC_015422.1	2837426	2837752	R	KEGG: ajs:Ajs_2671 hypothetical protein; hypothetical protein	complement(2837426..2837752)	Alicycliphilus denitrificans K601	10483757
YP_004388578.1	CDS	Alide2_2710	NC_015422.1	2837936	2838244	D	hypothetical protein	2837936..2838244	Alicycliphilus denitrificans K601	10483758
YP_004388579.1	CDS	Alide2_2711	NC_015422.1	2838501	2838809	D	TIGRFAM: Flagellar hook-basal body complex protein FliE; HAMAP: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_2673 flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein fliE	2838501..2838809	Alicycliphilus denitrificans K601	10483759
YP_004388580.1	CDS	Alide2_2712	NC_015422.1	2838985	2840250	D	TIGRFAM: Acetate kinase; KEGG: ajs:Ajs_2674 acetate kinase; PFAM: Acetate/butyrate kinase; acetate kinase	2838985..2840250	Alicycliphilus denitrificans K601	10483760
YP_004388581.1	CDS	Alide2_2713	NC_015422.1	2840464	2840916	D	manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2675 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	2840464..2840916	Alicycliphilus denitrificans K601	10483761
YP_004388582.1	CDS	Alide2_2714	NC_015422.1	2841069	2842424	D	KEGG: ajs:Ajs_2676 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; Cyclopropane-fatty-acyl-phospholipid synthase	2841069..2842424	Alicycliphilus denitrificans K601	10483762
YP_004388583.1	CDS	Alide2_2715	NC_015422.1	2842664	2843062	D	KEGG: ajs:Ajs_2677 hypothetical protein; hypothetical protein	2842664..2843062	Alicycliphilus denitrificans K601	10483763
YP_004388584.1	CDS	Alide2_2716	NC_015422.1	2843169	2845589	D	PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; KEGG: ajs:Ajs_2678 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase	2843169..2845589	Alicycliphilus denitrificans K601	10483764
YP_004388585.1	CDS	Alide2_2717	NC_015422.1	2845695	2846957	D	KEGG: ajs:Ajs_2679 hypothetical protein; hypothetical protein	2845695..2846957	Alicycliphilus denitrificans K601	10483765
YP_004388586.1	CDS	Alide2_2718	NC_015422.1	2847023	2848066	R	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type II; KEGG: ajs:Ajs_2680 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase	complement(2847023..2848066)	Alicycliphilus denitrificans K601	10483766
YP_004388587.1	CDS	Alide2_2719	NC_015422.1	2848094	2849713	R	PFAM: ABC-1; KEGG: ajs:Ajs_2681 2-octaprenylphenol hydroxylase; ABC transporter	complement(2848094..2849713)	Alicycliphilus denitrificans K601	10483767
YP_004388588.1	CDS	Alide2_2720	NC_015422.1	2849713	2850732	R	KEGG: ajs:Ajs_2682 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; phosphoglycerate dehydrogenase	complement(2849713..2850732)	Alicycliphilus denitrificans K601	10483768
YP_004388589.1	CDS	Alide2_2721	NC_015422.1	2850729	2851391	R	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_2683 methyltransferase type 11; type 11 methyltransferase	complement(2850729..2851391)	Alicycliphilus denitrificans K601	10483769
YP_004388590.1	CDS	Alide2_2722	NC_015422.1	2851388	2852032	R	KEGG: ajs:Ajs_1500 hypothetical protein; hypothetical protein	complement(2851388..2852032)	Alicycliphilus denitrificans K601	10483770
YP_004388591.1	CDS	Alide2_2723	NC_015422.1	2852070	2852732	R	KEGG: ajs:Ajs_2687 hypothetical protein; hypothetical protein	complement(2852070..2852732)	Alicycliphilus denitrificans K601	10483771
YP_004388592.1	CDS	Alide2_2724	NC_015422.1	2852739	2853914	R	KEGG: ajs:Ajs_2688 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap	complement(2852739..2853914)	Alicycliphilus denitrificans K601	10483772
YP_004388593.1	CDS	Alide2_2725	NC_015422.1	2853911	2854810	R	KEGG: ajs:Ajs_2689 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; ribose-phosphate pyrophosphokinase	complement(2853911..2854810)	Alicycliphilus denitrificans K601	10483773
YP_004388594.1	CDS	Alide2_2726	NC_015422.1	2854807	2856348	R	KEGG: ajs:Ajs_2690 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; thymidine phosphorylase	complement(2854807..2856348)	Alicycliphilus denitrificans K601	10483774
YP_004388595.1	CDS	Alide2_2727	NC_015422.1	2856345	2857703	R	KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	complement(2856345..2857703)	Alicycliphilus denitrificans K601	10483775
YP_004388596.1	CDS	Alide2_2728	NC_015422.1	2857729	2858226	R	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2692 hypothetical protein; hypothetical protein	complement(2857729..2858226)	Alicycliphilus denitrificans K601	10483776
YP_004388597.1	CDS	Alide2_2729	NC_015422.1	2858228	2859112	R	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_2693 hypothetical protein; hypothetical protein	complement(2858228..2859112)	Alicycliphilus denitrificans K601	10483777
YP_004388598.1	CDS	Alide2_2730	NC_015422.1	2859135	2859746	R	PFAM: LemA; KEGG: ajs:Ajs_2694 LemA family protein; LemA family protein	complement(2859135..2859746)	Alicycliphilus denitrificans K601	10483778
YP_004388599.1	CDS	Alide2_2731	NC_015422.1	2859743	2861056	R	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_2695 major facilitator superfamily transporter; major facilitator superfamily protein	complement(2859743..2861056)	Alicycliphilus denitrificans K601	10483779
YP_004388600.1	CDS	Alide2_2732	NC_015422.1	2861076	2863523	R	TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2696 copper-translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase	complement(2861076..2863523)	Alicycliphilus denitrificans K601	10483780
YP_004388601.1	CDS	Alide2_2733	NC_015422.1	2863557	2864420	R	KEGG: ajs:Ajs_2697 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related; polyphosphate kinase 2	complement(2863557..2864420)	Alicycliphilus denitrificans K601	10483781
YP_004388602.1	CDS	Alide2_2734	NC_015422.1	2864432	2864626	R	hypothetical protein	complement(2864432..2864626)	Alicycliphilus denitrificans K601	10483782
YP_004388603.1	CDS	Alide2_2735	NC_015422.1	2865357	2865800	D	manually curated; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: ajs:Ajs_2699 MerR family transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	2865357..2865800	Alicycliphilus denitrificans K601	10483783
YP_004388604.1	CDS	Alide2_2736	NC_015422.1	2866093	2866443	D	KEGG: ajs:Ajs_2700 hypothetical protein; hypothetical protein	2866093..2866443	Alicycliphilus denitrificans K601	10483784
YP_004388605.1	CDS	Alide2_2737	NC_015422.1	2866669	2866908	D	KEGG: dac:Daci_0472 hypothetical protein; hypothetical protein	2866669..2866908	Alicycliphilus denitrificans K601	10483785
YP_004388606.1	CDS	Alide2_2738	NC_015422.1	2867084	2868733	R	KEGG: ajs:Ajs_2702 hypothetical protein; hypothetical protein	complement(2867084..2868733)	Alicycliphilus denitrificans K601	10483786
YP_004388607.1	CDS	Alide2_2739	NC_015422.1	2868832	2872011	R	KEGG: ajs:Ajs_2703 CzcA family heavy metal efflux protein; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	complement(2868832..2872011)	Alicycliphilus denitrificans K601	10483787
YP_004388608.1	CDS	Alide2_2740	NC_015422.1	2872027	2873640	R	TIGRFAM: Secretion protein HlyD; KEGG: ajs:Ajs_1482 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit	complement(2872027..2873640)	Alicycliphilus denitrificans K601	10483788
YP_004388609.1	CDS	Alide2_2741	NC_015422.1	2873637	2874911	R	PFAM: Outer membrane efflux protein; KEGG: ajs:Ajs_1481 outer membrane efflux protein; outer membrane efflux protein	complement(2873637..2874911)	Alicycliphilus denitrificans K601	10483789
YP_004388610.1	CDS	Alide2_2742	NC_015422.1	2874908	2875156	R	PFAM: Protein of unknown function DUF2789; KEGG: ajs:Ajs_1480 hypothetical protein; hypothetical protein	complement(2874908..2875156)	Alicycliphilus denitrificans K601	10483790
YP_004388611.1	CDS	Alide2_2743	NC_015422.1	2875214	2876494	R	KEGG: ajs:Ajs_1479 membrane protein-like protein; hypothetical protein	complement(2875214..2876494)	Alicycliphilus denitrificans K601	10483791
YP_004388612.1	CDS	Alide2_2744	NC_015422.1	2876491	2876646	R	KEGG: dia:Dtpsy_2188 hypothetical protein; hypothetical protein	complement(2876491..2876646)	Alicycliphilus denitrificans K601	10483792
YP_004388613.1	CDS	Alide2_2745	NC_015422.1	2876953	2877999	R	TIGRFAM: YVTN beta-propeller repeat; KEGG: ajs:Ajs_1471 YVTN beta-propeller repeat-containing protein; 40-residue YVTN family beta-propeller repeat-containing protein	complement(2876953..2877999)	Alicycliphilus denitrificans K601	10483793
YP_004388614.1	CDS	Alide2_2746	NC_015422.1	2878104	2879942	R	KEGG: ajs:Ajs_1470 hypothetical protein; hypothetical protein	complement(2878104..2879942)	Alicycliphilus denitrificans K601	10483794
YP_004388615.1	CDS	Alide2_2747	NC_015422.1	2879963	2882296	R	SMART: TRASH; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: lbf:LBF_0420 cation transport ATPase; PFAM: ATPase, P-type, ATPase-associated domain; YHS; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	complement(2879963..2882296)	Alicycliphilus denitrificans K601	10483795
YP_004388616.1	CDS	Alide2_2748	NC_015422.1	2882300	2882551	R	KEGG: lbf:LBF_0421 hypothetical protein; hypothetical protein	complement(2882300..2882551)	Alicycliphilus denitrificans K601	10483796
YP_004388617.1	CDS	Alide2_2749	NC_015422.1	2882636	2882929	R	KEGG: ajs:Ajs_1467 heavy metal transport/detoxification protein; manually curated; PFAM: Heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein	complement(2882636..2882929)	Alicycliphilus denitrificans K601	10483797
YP_004388618.1	CDS	Alide2_2750	NC_015422.1	2882980	2883648	R	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ajs:Ajs_1466 isoprenylcysteine carboxyl methyltransferase; Isoprenylcysteine carboxyl methyltransferase	complement(2882980..2883648)	Alicycliphilus denitrificans K601	10483798
YP_004388619.1	CDS	Alide2_2751	NC_015422.1	2883645	2883929	R	KEGG: ajs:Ajs_1465 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2933; hypothetical protein	complement(2883645..2883929)	Alicycliphilus denitrificans K601	10483799
YP_004388620.1	CDS	Alide2_2752	NC_015422.1	2883955	2884428	R	KEGG: ajs:Ajs_1464 hypothetical protein; hypothetical protein	complement(2883955..2884428)	Alicycliphilus denitrificans K601	10483800
YP_004388621.1	CDS	Alide2_2753	NC_015422.1	2884518	2884862	R	KEGG: ajs:Ajs_1463 hypothetical protein; hypothetical protein	complement(2884518..2884862)	Alicycliphilus denitrificans K601	10483801
YP_004388622.1	CDS	Alide2_2754	NC_015422.1	2885099	2885764	D	TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: ajs:Ajs_1461 two component heavy metal response transcriptional regulator; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator	2885099..2885764	Alicycliphilus denitrificans K601	10483802
YP_004388623.1	CDS	Alide2_2755	NC_015422.1	2885761	2886675	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(2885761..2886675)	Alicycliphilus denitrificans K601	10483803
YP_004388624.1	CDS	Alide2_2756	NC_015422.1	2886672	2886995	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(2886672..2886995)	Alicycliphilus denitrificans K601	10483804
YP_004388625.1	CDS	Alide2_2758	NC_015422.1	2887631	2888161	R	KEGG: dat:HRM2_14600 hypothetical protein; hypothetical protein	complement(2887631..2888161)	Alicycliphilus denitrificans K601	10483806
YP_004388626.1	CDS	Alide2_2759	NC_015422.1	2888161	2888550	R	PFAM: MTH538 TIR-like domain; KEGG: hdn:Hden_3446 hypothetical protein; hypothetical protein	complement(2888161..2888550)	Alicycliphilus denitrificans K601	10483807
YP_004388627.1	CDS	Alide2_2760	NC_015422.1	2889271	2890920	R	hypothetical protein	complement(2889271..2890920)	Alicycliphilus denitrificans K601	10483808
YP_004388628.1	CDS	Alide2_2761	NC_015422.1	2891349	2891789	R	KEGG: vap:Vapar_2079 hypothetical protein; manually curated; PFAM: Thioesterase superfamily; thioesterase superfamily protein	complement(2891349..2891789)	Alicycliphilus denitrificans K601	10483809
YP_004388629.1	CDS	Alide2_2762	NC_015422.1	2891903	2892451	R	manually curated; KEGG: ajs:Ajs_1603 hypothetical protein; hypothetical protein	complement(2891903..2892451)	Alicycliphilus denitrificans K601	10483810
YP_004388630.1	CDS	Alide2_2763	NC_015422.1	2892448	2892894	R	manually curated; KEGG: ajs:Ajs_1602 hypothetical protein; hypothetical protein	complement(2892448..2892894)	Alicycliphilus denitrificans K601	10483811
YP_004388631.1	CDS	Alide2_2764	NC_015422.1	2892902	2893177	R	KEGG: ajs:Ajs_1601 hypothetical protein; hypothetical protein	complement(2892902..2893177)	Alicycliphilus denitrificans K601	10483812
YP_004388632.1	CDS	Alide2_2765	NC_015422.1	2893174	2894205	R	TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein; PRTRC system protein D	complement(2893174..2894205)	Alicycliphilus denitrificans K601	10483813
YP_004388633.1	CDS	Alide2_2766	NC_015422.1	2895406	2896545	D	manually curated; KEGG: ajs:Ajs_1599 hypothetical protein; hypothetical protein	2895406..2896545	Alicycliphilus denitrificans K601	10483814
YP_004388634.1	CDS	Alide2_2767	NC_015422.1	2896556	2896885	R	KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS	complement(2896556..2896885)	Alicycliphilus denitrificans K601	10483815
YP_004388635.1	CDS	Alide2_2768	NC_015422.1	2897014	2897223	R	hypothetical protein	complement(2897014..2897223)	Alicycliphilus denitrificans K601	10483816
YP_004388636.1	CDS	Alide2_2770	NC_015422.1	2898121	2898831	R	KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016; PRTRC system protein A	complement(2898121..2898831)	Alicycliphilus denitrificans K601	10483818
YP_004388637.1	CDS	Alide2_2771	NC_015422.1	2898828	2899568	R	TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein; PRTRC system protein B	complement(2898828..2899568)	Alicycliphilus denitrificans K601	10483819
YP_004388638.1	CDS	Alide2_2773	NC_015422.1	2899937	2901067	D	KEGG: pol:Bpro_2745 putative transposase; putative transposase	2899937..2901067	Alicycliphilus denitrificans K601	10483820
YP_004388639.1	CDS	Alide2_2774	NC_015422.1	2901033	2901326	D	KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein	2901033..2901326	Alicycliphilus denitrificans K601	10483821
YP_004388640.1	CDS	Alide2_2775	NC_015422.1	2902134	2902592	R	TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein; ParB-related,ThiF-related cassette, protein C	complement(2902134..2902592)	Alicycliphilus denitrificans K601	10483822
YP_004388641.1	CDS	Alide2_2776	NC_015422.1	2902689	2903165	R	TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein; PRTRC system protein E	complement(2902689..2903165)	Alicycliphilus denitrificans K601	10483823
YP_004388642.1	CDS	Alide2_2777	NC_015422.1	2903263	2905056	R	TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; PRTRC system ParB family protein	complement(2903263..2905056)	Alicycliphilus denitrificans K601	10483824
YP_004388643.1	CDS	Alide2_2778	NC_015422.1	2905790	2908777	D	PFAM: DNA methylase, adenine-specific; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit; N-6 DNA methylase	2905790..2908777	Alicycliphilus denitrificans K601	10483825
YP_004388644.1	CDS	Alide2_2779	NC_015422.1	2908790	2909497	D	KEGG: hch:HCH_07035 hypothetical protein; hypothetical protein	2908790..2909497	Alicycliphilus denitrificans K601	10483826
YP_004388645.1	CDS	Alide2_2780	NC_015422.1	2909821	2912418	D	KEGG: seh:SeHA_C1592 helicase C2; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, ATP-dependent, c2 type; DEAD/DEAH box helicase domain-containing protein	2909821..2912418	Alicycliphilus denitrificans K601	10483827
YP_004388646.1	CDS	Alide2_2782	NC_015422.1	2914766	2915098	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(2914766..2915098)	Alicycliphilus denitrificans K601	10483829
YP_004388647.1	CDS	Alide2_2783	NC_015422.1	2915095	2915523	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(2915095..2915523)	Alicycliphilus denitrificans K601	10483830
YP_004388648.1	CDS	Alide2_2784	NC_015422.1	2915578	2916102	R	KEGG: ajs:Ajs_1561 hypothetical protein; hypothetical protein	complement(2915578..2916102)	Alicycliphilus denitrificans K601	10483831
YP_004388649.1	CDS	Alide2_2785	NC_015422.1	2916597	2917199	D	KEGG: ajs:Ajs_1560 hypothetical protein; hypothetical protein	2916597..2917199	Alicycliphilus denitrificans K601	10483832
YP_004388650.1	CDS	Alide2_2786	NC_015422.1	2917270	2917518	D	KEGG: ajs:Ajs_1559 hypothetical protein; hypothetical protein	2917270..2917518	Alicycliphilus denitrificans K601	10483833
YP_004388651.1	CDS	Alide2_2787	NC_015422.1	2917530	2918108	D	KEGG: ajs:Ajs_1558 hypothetical protein; hypothetical protein	2917530..2918108	Alicycliphilus denitrificans K601	10483834
YP_004388652.1	CDS	Alide2_2788	NC_015422.1	2918095	2919099	D	KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein	2918095..2919099	Alicycliphilus denitrificans K601	10483835
YP_004388653.1	CDS	Alide2_2789	NC_015422.1	2919361	2920425	D	KEGG: ajs:Ajs_1554 hypothetical protein; hypothetical protein	2919361..2920425	Alicycliphilus denitrificans K601	10483836
YP_004388654.1	CDS	Alide2_2790	NC_015422.1	2920494	2921060	R	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor; putative phage repressor	complement(2920494..2921060)	Alicycliphilus denitrificans K601	10483837
YP_004388655.1	CDS	Alide2_2791	NC_015422.1	2921492	2921806	D	KEGG: ajs:Ajs_1552 hypothetical protein; hypothetical protein	2921492..2921806	Alicycliphilus denitrificans K601	10483838
YP_004388656.1	CDS	Alide2_2792	NC_015422.1	2921807	2922457	D	KEGG: ajs:Ajs_1551 hypothetical protein; hypothetical protein	2921807..2922457	Alicycliphilus denitrificans K601	10483839
YP_004388657.1	CDS	Alide2_2793	NC_015422.1	2922511	2924274	D	PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein; Relaxase	2922511..2924274	Alicycliphilus denitrificans K601	10483840
YP_004388658.1	CDS	Alide2_2794	NC_015422.1	2924276	2926183	D	TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein; conjugative coupling factor TraD	2924276..2926183	Alicycliphilus denitrificans K601	10483841
YP_004388659.1	CDS	Alide2_2795	NC_015422.1	2926180	2926803	D	KEGG: ajs:Ajs_1548 hypothetical protein; hypothetical protein	2926180..2926803	Alicycliphilus denitrificans K601	10483842
YP_004388660.1	CDS	Alide2_2796	NC_015422.1	2926818	2927063	R	manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(2926818..2927063)	Alicycliphilus denitrificans K601	10483843
YP_004388661.1	CDS	Alide2_2797	NC_015422.1	2927186	2927494	D	KEGG: ajs:Ajs_1546 hypothetical protein; hypothetical protein	2927186..2927494	Alicycliphilus denitrificans K601	10483844
YP_004388662.1	CDS	Alide2_2798	NC_015422.1	2927647	2928186	D	KEGG: ajs:Ajs_1545 hypothetical protein; hypothetical protein	2927647..2928186	Alicycliphilus denitrificans K601	10483845
YP_004388663.1	CDS	Alide2_2799	NC_015422.1	2928361	2928897	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	2928361..2928897	Alicycliphilus denitrificans K601	10483846
YP_004388664.1	CDS	Alide2_2800	NC_015422.1	2928894	2929598	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dar:Daro_2312 OmpA/MotB; OmpA/MotB domain-containing protein	2928894..2929598	Alicycliphilus denitrificans K601	10483847
YP_004388665.1	CDS	Alide2_2801	NC_015422.1	2929713	2930075	D	KEGG: ajs:Ajs_1542 hypothetical protein; hypothetical protein	2929713..2930075	Alicycliphilus denitrificans K601	10483848
YP_004388666.1	CDS	Alide2_2802	NC_015422.1	2930107	2930406	D	KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL	2930107..2930406	Alicycliphilus denitrificans K601	10483849
YP_004388667.1	CDS	Alide2_2803	NC_015422.1	2930421	2930987	D	TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE; type IV conjugative transfer system protein TraE	2930421..2930987	Alicycliphilus denitrificans K601	10483850
YP_004388668.1	CDS	Alide2_2804	NC_015422.1	2930974	2931966	D	KEGG: ajs:Ajs_1539 hypothetical protein; hypothetical protein	2930974..2931966	Alicycliphilus denitrificans K601	10483851
YP_004388669.1	CDS	Alide2_2805	NC_015422.1	2931963	2933369	D	KEGG: ajs:Ajs_1538 TraB pilus assembly family protein; TraB pilus assembly family protein	2931963..2933369	Alicycliphilus denitrificans K601	10483852
YP_004388670.1	CDS	Alide2_2806	NC_015422.1	2933353	2934198	D	PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein; disulfide bond isomerase, DsbC/G	2933353..2934198	Alicycliphilus denitrificans K601	10483853
YP_004388671.1	CDS	Alide2_2807	NC_015422.1	2934195	2934839	D	KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV	2934195..2934839	Alicycliphilus denitrificans K601	10483854
YP_004388672.1	CDS	Alide2_2808	NC_015422.1	2934847	2937429	D	TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein; type-IV secretion system protein TraC	2934847..2937429	Alicycliphilus denitrificans K601	10483855
YP_004388673.1	CDS	Alide2_2809	NC_015422.1	2937426	2937785	D	KEGG: ajs:Ajs_1534 hypothetical protein; hypothetical protein	2937426..2937785	Alicycliphilus denitrificans K601	10483856
YP_004388674.1	CDS	Alide2_2810	NC_015422.1	2937782	2938369	D	KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF	2937782..2938369	Alicycliphilus denitrificans K601	10483857
YP_004388675.1	CDS	Alide2_2811	NC_015422.1	2938381	2938788	D	KEGG: ajs:Ajs_1532 hypothetical protein; hypothetical protein	2938381..2938788	Alicycliphilus denitrificans K601	10483858
YP_004388676.1	CDS	Alide2_2812	NC_015422.1	2938785	2939414	D	TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site; type-F conjugative transfer system protein TraW	2938785..2939414	Alicycliphilus denitrificans K601	10483859
YP_004388677.1	CDS	Alide2_2813	NC_015422.1	2939411	2940430	D	PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein; TraU family protein	2939411..2940430	Alicycliphilus denitrificans K601	10483860
YP_004388678.1	CDS	Alide2_2814	NC_015422.1	2940417	2941169	D	KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC	2940417..2941169	Alicycliphilus denitrificans K601	10483861
YP_004388679.1	CDS	Alide2_2815	NC_015422.1	2941179	2943596	D	KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN; conjugal transfer mating pair stabilization protein TraN	2941179..2943596	Alicycliphilus denitrificans K601	10483862
YP_004388680.1	CDS	Alide2_2816	NC_015422.1	2943593	2943988	D	KEGG: ajs:Ajs_1527 hypothetical protein; hypothetical protein	2943593..2943988	Alicycliphilus denitrificans K601	10483863
YP_004388681.1	CDS	Alide2_2817	NC_015422.1	2943996	2944874	D	TIGRFAM: Type IV conjugative transfer system protein TraF; KEGG: ajs:Ajs_1526 hypothetical protein; TraF-like protein	2943996..2944874	Alicycliphilus denitrificans K601	10483864
YP_004388682.1	CDS	Alide2_2818	NC_015422.1	2944884	2946332	D	PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein; TraH family protein	2944884..2946332	Alicycliphilus denitrificans K601	10483865
YP_004388683.1	CDS	Alide2_2819	NC_015422.1	2946354	2949128	D	PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein; TraG domain-containing protein	2946354..2949128	Alicycliphilus denitrificans K601	10483866
YP_004388684.1	CDS	Alide2_2820	NC_015422.1	2949134	2949469	R	KEGG: ajs:Ajs_1521 hypothetical protein; hypothetical protein	complement(2949134..2949469)	Alicycliphilus denitrificans K601	10483867
YP_004388685.1	CDS	Alide2_2821	NC_015422.1	2949955	2951064	D	hypothetical protein	2949955..2951064	Alicycliphilus denitrificans K601	10483868
YP_004388686.1	CDS	Alide2_2822	NC_015422.1	2951033	2951890	D	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: mmu:16621 kallikrein B, plasma 1; SMART: Peptidase S1/S6, chymotrypsin/Hap; Trypsin	2951033..2951890	Alicycliphilus denitrificans K601	10483869
YP_004388687.1	CDS	Alide2_2823	NC_015422.1	2952262	2952687	R	KEGG: dia:Dtpsy_1455 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	complement(2952262..2952687)	Alicycliphilus denitrificans K601	10483871
YP_004388688.1	CDS	Alide2_2824	NC_015422.1	2952787	2953140	R	TIGRFAM: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_1454 integration host factor subunit alpha; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit alpha	complement(2952787..2953140)	Alicycliphilus denitrificans K601	10483872
YP_004388689.1	CDS	Alide2_2825	NC_015422.1	2953137	2955581	R	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: ajs:Ajs_2395 phenylalanyl-tRNA synthetase subunit beta; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; Phenylalanyl-tRNA synthetase beta chain	complement(2953137..2955581)	Alicycliphilus denitrificans K601	10483873
YP_004388690.1	CDS	Alide2_2826	NC_015422.1	2955705	2956757	R	KEGG: dia:Dtpsy_1452 phenylalanyl-tRNA synthetase subunit alpha; TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; PFAM: Phenylalanyl-tRNA synthetase; Phenylalanyl-tRNA synthetase, class II, N-terminal; phenylalanyl-tRNA synthetase subunit alpha	complement(2955705..2956757)	Alicycliphilus denitrificans K601	10483874
YP_004388691.1	CDS	Alide2_2827	NC_015422.1	2956859	2957218	R	TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: ajs:Ajs_2397 50S ribosomal protein L20; PFAM: Ribosomal protein L20; 50S ribosomal protein L20	complement(2956859..2957218)	Alicycliphilus denitrificans K601	10483875
YP_004388692.1	CDS	Alide2_2828	NC_015422.1	2957245	2957448	R	KEGG: aav:Aave_2857 50S ribosomal protein L35; TIGRFAM: Ribosomal protein L35, non-mitochondrial; PFAM: Ribosomal protein L35; 50S ribosomal protein L35	complement(2957245..2957448)	Alicycliphilus denitrificans K601	10483876
YP_004388693.1	CDS	Alide2_2829	NC_015422.1	2957624	2958223	R	PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; manually curated; TIGRFAM: Translation initiation factor 3; KEGG: ajs:Ajs_2399 translation initiation factor 3; HAMAP: Translation initiation factor 3; translation initiation factor IF-3	complement(2957624..2958223)	Alicycliphilus denitrificans K601	10483877
YP_004388694.1	CDS	Alide2_2830	NC_015422.1	2958302	2960221	R	TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; KEGG: ajs:Ajs_2400 threonyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; threonyl-tRNA synthetase	complement(2958302..2960221)	Alicycliphilus denitrificans K601	10483878
YP_004388695.1	CDS	Alide2_2831	NC_015422.1	2960580	2961491	R	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: bbr:BB4124 putative enzyme-regulator fusion protein; GreA/GreB family elongation factor	complement(2960580..2961491)	Alicycliphilus denitrificans K601	10483879
YP_004388696.1	CDS	Alide2_2832	NC_015422.1	2961912	2963243	R	TIGRFAM: Isocitrate lyase; KEGG: dia:Dtpsy_1447 isocitrate lyase; PFAM: Isocitrate lyase/phosphorylmutase; isocitrate lyase	complement(2961912..2963243)	Alicycliphilus denitrificans K601	10483880
YP_004388697.1	CDS	Alide2_2833	NC_015422.1	2963509	2964528	D	PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_2402 hypothetical protein; hypothetical protein	2963509..2964528	Alicycliphilus denitrificans K601	10483881
YP_004388698.1	CDS	Alide2_2834	NC_015422.1	2964685	2964966	D	KEGG: dia:Dtpsy_1444 SWIB/MDM2 domain protein; PFAM: SWIB/MDM2 domain; SMART: SWIB domain; SWIB/MDM2 domain-containing protein	2964685..2964966	Alicycliphilus denitrificans K601	10483882
YP_004388699.1	CDS	Alide2_2835	NC_015422.1	2965161	2965433	D	KEGG: dia:Dtpsy_1443 BFD domain protein (2Fe-2S)-binding domain protein; manually curated; PFAM: BFD-like [2Fe-2S]-binding domain; 2Fe-2S-binding domain-containing protein	2965161..2965433	Alicycliphilus denitrificans K601	10483883
YP_004388700.1	CDS	Alide2_2836	NC_015422.1	2965589	2966251	D	KEGG: dia:Dtpsy_1442 TonB family protein; TIGRFAM: TonB, C-terminal; PFAM: TonB, C-terminal; TonB family protein	2965589..2966251	Alicycliphilus denitrificans K601	10483884
YP_004388701.1	CDS	Alide2_2837	NC_015422.1	2966267	2966986	D	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1441 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel	2966267..2966986	Alicycliphilus denitrificans K601	10483885
YP_004388702.1	CDS	Alide2_2838	NC_015422.1	2966993	2967403	D	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_2408 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR	2966993..2967403	Alicycliphilus denitrificans K601	10483886
YP_004388703.1	CDS	Alide2_2839	NC_015422.1	2967499	2967726	D	PFAM: Hemin uptake protein HemP; KEGG: ajs:Ajs_2409 hypothetical protein; Hemin uptake protein hemP	2967499..2967726	Alicycliphilus denitrificans K601	10483887
YP_004388704.1	CDS	Alide2_2840	NC_015422.1	2967954	2968361	R	PFAM: Domain of unknown function DUF336; KEGG: dia:Dtpsy_1438 protein of unknown function DUF336; hypothetical protein	complement(2967954..2968361)	Alicycliphilus denitrificans K601	10483888
YP_004388705.1	CDS	Alide2_2841	NC_015422.1	2968580	2969269	D	PFAM: Inhibitor of apoptosis-promoting Bax1-related; KEGG: dia:Dtpsy_1437 protein of unknown function UPF0005; hypothetical protein	2968580..2969269	Alicycliphilus denitrificans K601	10483889
YP_004388706.1	CDS	Alide2_2842	NC_015422.1	2969388	2969891	D	KEGG: rme:Rmet_3623 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; regulatory protein MarR	2969388..2969891	Alicycliphilus denitrificans K601	10483890
YP_004388707.1	CDS	Alide2_2843	NC_015422.1	2969888	2971321	D	PFAM: Major facilitator superfamily MFS-1; KEGG: reu:Reut_B5563 major facilitator transporter; major facilitator superfamily protein	2969888..2971321	Alicycliphilus denitrificans K601	10483891
YP_004388708.1	CDS	Alide2_2844	NC_015422.1	2971375	2971758	D	KEGG: ajs:Ajs_2412 hypothetical protein; hypothetical protein	2971375..2971758	Alicycliphilus denitrificans K601	10483892
YP_004388709.1	CDS	Alide2_2845	NC_015422.1	2971791	2972123	R	PFAM: Small multidrug resistance protein; KEGG: dia:Dtpsy_1617 small multidrug resistance protein; small multidrug resistance protein	complement(2971791..2972123)	Alicycliphilus denitrificans K601	10483893
YP_004388710.1	CDS	Alide2_2846	NC_015422.1	2972338	2972928	D	PFAM: Chromate transporter; KEGG: dia:Dtpsy_1615 chromate transporter; chromate transporter	2972338..2972928	Alicycliphilus denitrificans K601	10483894
YP_004388711.1	CDS	Alide2_2847	NC_015422.1	2972931	2973524	D	PFAM: Chromate transporter; KEGG: dia:Dtpsy_1614 chromate transporter; chromate transporter	2972931..2973524	Alicycliphilus denitrificans K601	10483895
YP_004388712.1	CDS	Alide2_2848	NC_015422.1	2973546	2974373	R	KEGG: dia:Dtpsy_1612 silent information regulator protein Sir2; HAMAP: NAD-dependent histone deacetylase, silent information regulator Sir2; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; NAD-dependent deacetylase	complement(2973546..2974373)	Alicycliphilus denitrificans K601	10483896
YP_004388713.1	CDS	Alide2_2849	NC_015422.1	2974395	2975060	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dia:Dtpsy_1611 regulatory protein TetR; TetR family transcriptional regulator	complement(2974395..2975060)	Alicycliphilus denitrificans K601	10483897
YP_004388714.1	CDS	Alide2_2850	NC_015422.1	2975144	2975497	D	PFAM: Protein of unknown function DUF1428; KEGG: dia:Dtpsy_1610 protein of unknown function DUF1428; hypothetical protein	2975144..2975497	Alicycliphilus denitrificans K601	10483898
YP_004388715.1	CDS	Alide2_2851	NC_015422.1	2975542	2975889	D	PFAM: Glutathione-dependent formaldehyde-activating, GFA; KEGG: pol:Bpro_2417 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein	2975542..2975889	Alicycliphilus denitrificans K601	10483899
YP_004388716.1	CDS	Alide2_2852	NC_015422.1	2975983	2976435	D	KEGG: ajs:Ajs_2265 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase	2975983..2976435	Alicycliphilus denitrificans K601	10483900
YP_004388717.1	CDS	Alide2_2853	NC_015422.1	2976468	2976914	D	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dia:Dtpsy_1608 activator of HSP90 ATPase 1 family protein; Activator of Hsp90 ATPase 1 family protein	2976468..2976914	Alicycliphilus denitrificans K601	10483901
YP_004388718.1	CDS	Alide2_2854	NC_015422.1	2976950	2977435	D	KEGG: gur:Gura_0848 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase	2976950..2977435	Alicycliphilus denitrificans K601	10483902
YP_004388719.1	CDS	Alide2_2855	NC_015422.1	2977558	2977941	D	KEGG: dac:Daci_4029 hypothetical protein; hypothetical protein	2977558..2977941	Alicycliphilus denitrificans K601	10483903
YP_004388720.1	CDS	Alide2_2856	NC_015422.1	2977948	2978406	D	PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: dar:Daro_2725 hypothetical protein; Activator of Hsp90 ATPase 1 family protein	2977948..2978406	Alicycliphilus denitrificans K601	10483904
YP_004388721.1	CDS	Alide2_2857	NC_015422.1	2978413	2979159	R	TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; KEGG: dia:Dtpsy_1606 RNA methyltransferase, TrmH family, group 3; SMART: RNA 2-O ribose methyltransferase, substrate binding; TrmH family RNA methyltransferase	complement(2978413..2979159)	Alicycliphilus denitrificans K601	10483905
YP_004388722.1	CDS	Alide2_2858	NC_015422.1	2979302	2980513	D	KEGG: dia:Dtpsy_1605 serine/threonine transporter SstT; HAMAP: Serine/threonine transporter SstT; PFAM: Sodium:dicarboxylate symporter; serine/threonine transporter sstT	2979302..2980513	Alicycliphilus denitrificans K601	10483906
YP_004388723.1	CDS	Alide2_2859	NC_015422.1	2980547	2981269	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1604 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	complement(2980547..2981269)	Alicycliphilus denitrificans K601	10483907
YP_004388724.1	CDS	Alide2_2860	NC_015422.1	2981294	2981941	D	KEGG: dia:Dtpsy_1603 lipolytic protein G-D-S-L family; PFAM: Lipase, GDSL; Arylesterase	2981294..2981941	Alicycliphilus denitrificans K601	10483908
YP_004388725.1	CDS	Alide2_2861	NC_015422.1	2981955	2982785	R	PFAM: Protein of unknown function DUF2189, transmembrane; KEGG: dia:Dtpsy_1602 integral membrane protein; hypothetical protein	complement(2981955..2982785)	Alicycliphilus denitrificans K601	10483909
YP_004388726.1	CDS	Alide2_2862	NC_015422.1	2982898	2984127	R	KEGG: dia:Dtpsy_1601 Cys/Met metabolism pyridoxal-phosphate-dependent protein; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; Cystathionine beta-lyase	complement(2982898..2984127)	Alicycliphilus denitrificans K601	10483910
YP_004388727.1	CDS	Alide2_2863	NC_015422.1	2984148	2984603	R	KEGG: dia:Dtpsy_1600 transport-associated; PFAM: Transport-associated; SMART: Transport-associated and nodulation domain, bacteria; transport-associated protein	complement(2984148..2984603)	Alicycliphilus denitrificans K601	10483911
YP_004388728.1	CDS	Alide2_2864	NC_015422.1	2984730	2986415	D	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: ajs:Ajs_2275 sulphate transporter; sulfate transporter	2984730..2986415	Alicycliphilus denitrificans K601	10483912
YP_004388729.1	CDS	Alide2_2865	NC_015422.1	2986452	2987225	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1598 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	2986452..2987225	Alicycliphilus denitrificans K601	10483913
YP_004388730.1	CDS	Alide2_2866	NC_015422.1	2987236	2988105	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_1597 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase	2987236..2988105	Alicycliphilus denitrificans K601	10483914
YP_004388731.1	CDS	Alide2_2867	NC_015422.1	2988176	2990080	R	TIGRFAM: Propionate--CoA ligase; KEGG: dia:Dtpsy_1825 propionyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; propionate/CoA ligase	complement(2988176..2990080)	Alicycliphilus denitrificans K601	10483915
YP_004388732.1	CDS	Alide2_2868	NC_015422.1	2990201	2990809	R	PFAM: Isochorismatase-like; KEGG: dia:Dtpsy_1824 isochorismatase hydrolase; isochorismatase hydrolase	complement(2990201..2990809)	Alicycliphilus denitrificans K601	10483916
YP_004388733.1	CDS	Alide2_2869	NC_015422.1	2990873	2991976	R	KEGG: dia:Dtpsy_1823 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase	complement(2990873..2991976)	Alicycliphilus denitrificans K601	10483917
YP_004388734.1	CDS	Alide2_2870	NC_015422.1	2992122	2993036	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1814 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(2992122..2993036)	Alicycliphilus denitrificans K601	10483918
YP_004388735.1	CDS	Alide2_2871	NC_015422.1	2993167	2994684	D	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase [acylating]; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase	2993167..2994684	Alicycliphilus denitrificans K601	10483919
YP_004388736.1	CDS	Alide2_2872	NC_015422.1	2994681	2995079	D	PFAM: Protein of unknown function DUF1311; KEGG: ajs:Ajs_2008 hypothetical protein; hypothetical protein	2994681..2995079	Alicycliphilus denitrificans K601	10483920
YP_004388737.1	CDS	Alide2_2873	NC_015422.1	2995105	2996271	D	KEGG: ajs:Ajs_2007 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; butyryl-CoA dehydrogenase	2995105..2996271	Alicycliphilus denitrificans K601	10483921
YP_004388738.1	CDS	Alide2_2874	NC_015422.1	2996339	2996725	D	PFAM: TfoX, N-terminal; KEGG: dia:Dtpsy_1810 hypothetical protein; TfoX domain-containing protein	2996339..2996725	Alicycliphilus denitrificans K601	10483922
YP_004388739.1	CDS	Alide2_2875	NC_015422.1	2996756	2997652	D	TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; KEGG: dia:Dtpsy_1809 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase	2996756..2997652	Alicycliphilus denitrificans K601	10483923
YP_004388740.1	CDS	Alide2_2876	NC_015422.1	2997815	2998648	D	TIGRFAM: Methyltransferase FkbM; KEGG: ter:Tery_1754 FkbM family methyltransferase; methyltransferase FkbM family	2997815..2998648	Alicycliphilus denitrificans K601	10483924
YP_004388741.1	CDS	Alide2_2877	NC_015422.1	2998918	2999088	D	manually curated; KEGG: har:HEAR0421 hypothetical protein; hypothetical protein	2998918..2999088	Alicycliphilus denitrificans K601	10483925
YP_004388742.1	CDS	Alide2_2878	NC_015422.1	2999146	2999535	R	KEGG: dia:Dtpsy_1801 hypothetical protein; hypothetical protein	complement(2999146..2999535)	Alicycliphilus denitrificans K601	10483926
YP_004388743.1	CDS	Alide2_2879	NC_015422.1	2999673	3000881	D	TIGRFAM: Tryptophan synthase, beta chain; KEGG: dia:Dtpsy_1800 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase subunit beta	2999673..3000881	Alicycliphilus denitrificans K601	10483927
YP_004388744.1	CDS	Alide2_2880	NC_015422.1	3000909	3001247	D	PFAM: Protein of unknown function DUF469; KEGG: dia:Dtpsy_1799 protein of unknown function DUF469; hypothetical protein	3000909..3001247	Alicycliphilus denitrificans K601	10483928
YP_004388745.1	CDS	Alide2_2881	NC_015422.1	3001324	3002904	R	SMART: SAF domain; TIGRFAM: Galactarate dehydratase; KEGG: ajs:Ajs_1998 galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase, C-terminal; SAF domain; galactarate dehydratase	complement(3001324..3002904)	Alicycliphilus denitrificans K601	10483929
YP_004388746.1	CDS	Alide2_2882	NC_015422.1	3002945	3003943	R	KEGG: ajs:Ajs_1997 hypothetical protein; hypothetical protein	complement(3002945..3003943)	Alicycliphilus denitrificans K601	10483930
YP_004388747.1	CDS	Alide2_2883	NC_015422.1	3003968	3005263	R	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: ctt:CtCNB1_0239 mandelate racemase/muconate lactonizing; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; glucarate dehydratase	complement(3003968..3005263)	Alicycliphilus denitrificans K601	10483931
YP_004388748.1	CDS	Alide2_2884	NC_015422.1	3005269	3006102	D	KEGG: ctt:CtCNB1_0240 GntR-like protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	3005269..3006102	Alicycliphilus denitrificans K601	10483932
YP_004388749.1	CDS	Alide2_2885	NC_015422.1	3006195	3007181	D	KEGG: dia:Dtpsy_1794 hypothetical protein; hypothetical protein	3006195..3007181	Alicycliphilus denitrificans K601	10483933
YP_004388750.1	CDS	Alide2_2886	NC_015422.1	3007253	3008164	D	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase; HAMAP: 5-dehydro-4-deoxyglucarate dehydratase; KEGG: dia:Dtpsy_1793 5-dehydro-4-deoxyglucarate dehydratase; 5-dehydro-4-deoxyglucarate dehydratase	3007253..3008164	Alicycliphilus denitrificans K601	10483934
YP_004388751.1	CDS	Alide2_2887	NC_015422.1	3008238	3009191	D	KEGG: ajs:Ajs_1992 hypothetical protein; hypothetical protein	3008238..3009191	Alicycliphilus denitrificans K601	10483935
YP_004388752.1	CDS	Alide2_2888	NC_015422.1	3009203	3010195	D	KEGG: ajs:Ajs_1991 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Glyoxylate reductase	3009203..3010195	Alicycliphilus denitrificans K601	10483936
YP_004388753.1	CDS	Alide2_2889	NC_015422.1	3010227	3011564	D	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal; Mandelate racemase/muconate lactonizing enzyme, N-terminal; KEGG: dia:Dtpsy_1790 glucarate dehydratase; SMART: Mandelate racemase/muconate lactonizing enzyme, C-terminal; glucarate dehydratase	3010227..3011564	Alicycliphilus denitrificans K601	10483937
YP_004388754.1	CDS	Alide2_2890	NC_015422.1	3011636	3013084	D	PFAM: Aldehyde dehydrogenase domain; KEGG: ctt:CtCNB1_0246 aldehyde dehydrogenase; aldehyde dehydrogenase	3011636..3013084	Alicycliphilus denitrificans K601	10483938
YP_004388755.1	CDS	Alide2_2891	NC_015422.1	3013154	3013906	D	PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: dia:Dtpsy_1788 leucyl/phenylalanyl-tRNA--protein transferase; Leucyl/phenylalanyl-tRNA--protein transferase	3013154..3013906	Alicycliphilus denitrificans K601	10483939
YP_004388756.1	CDS	Alide2_2892	NC_015422.1	3013903	3014646	D	KEGG: dia:Dtpsy_1787 arginyl-tRNA-protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal; arginyl-tRNA--protein transferase	3013903..3014646	Alicycliphilus denitrificans K601	10483940
YP_004388757.1	CDS	Alide2_2893	NC_015422.1	3014719	3015420	R	PFAM: Pirin, N-terminal; KEGG: ajs:Ajs_1985 pirin domain-containing protein; Pirin domain-containing protein	complement(3014719..3015420)	Alicycliphilus denitrificans K601	10483941
YP_004388758.1	CDS	Alide2_2894	NC_015422.1	3015532	3016467	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_1784 transcriptional regulator, LysR family; LysR family transcriptional regulator	3015532..3016467	Alicycliphilus denitrificans K601	10483942
YP_004388759.1	CDS	Alide2_2895	NC_015422.1	3016542	3017636	D	PFAM: Amine oxidase; KEGG: ajs:Ajs_1983 FAD dependent oxidoreductase; amine oxidase	3016542..3017636	Alicycliphilus denitrificans K601	10483943
YP_004388760.1	CDS	Alide2_2896	NC_015422.1	3017633	3018598	D	PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; TIGRFAM: Glutamyl-Q tRNA(Asp) synthetase; HAMAP: Glutamyl-Q tRNA(Asp) synthetase; KEGG: ajs:Ajs_1982 glutamate--tRNA ligase; glutamyl-Q tRNA(Asp) synthetase	3017633..3018598	Alicycliphilus denitrificans K601	10483944
YP_004388761.1	CDS	Alide2_2897	NC_015422.1	3018556	3019329	D	TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N-7) methyltransferase; KEGG: dia:Dtpsy_1781 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; tRNA (guanine-N(7)-)-methyltransferase	3018556..3019329	Alicycliphilus denitrificans K601	10483945
YP_004388762.1	CDS	Alide2_2898	NC_015422.1	3019358	3020362	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_1780 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	3019358..3020362	Alicycliphilus denitrificans K601	10483946
YP_004388763.1	CDS	Alide2_2899	NC_015422.1	3020413	3023034	R	TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; KEGG: dia:Dtpsy_1779 alanyl-tRNA synthetase; SMART: Threonyl/alanyl tRNA synthetase, SAD; alanyl-tRNA synthetase	complement(3020413..3023034)	Alicycliphilus denitrificans K601	10483947
YP_004388764.1	CDS	Alide2_2900	NC_015422.1	3023254	3024168	D	KEGG: vap:Vapar_5222 dihydrodipicolinate synthetase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase	3023254..3024168	Alicycliphilus denitrificans K601	10483948
YP_004388765.1	CDS	Alide2_2901	NC_015422.1	3024189	3024824	D	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_4596 tripartite ATP-independent periplasmic; TRAP dicarboxylate transporter subunit DctQ	3024189..3024824	Alicycliphilus denitrificans K601	10483949
YP_004388766.1	CDS	Alide2_2902	NC_015422.1	3024842	3026107	D	KEGG: ctt:CtCNB1_4595 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	3024842..3026107	Alicycliphilus denitrificans K601	10483950
YP_004388767.1	CDS	Alide2_2903	NC_015422.1	3026133	3027119	D	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_4594 TRAP dicarboxylate transporter, DctP subunit; family 7 extracellular solute-binding protein	3026133..3027119	Alicycliphilus denitrificans K601	10483951
YP_004388768.1	CDS	Alide2_2904	NC_015422.1	3027178	3028212	D	KEGG: bpd:BURPS668_A0565 malate/L-lactate dehydrogenase family protein; PFAM: Malate/L-lactate dehydrogenase; malate dehydrogenase	3027178..3028212	Alicycliphilus denitrificans K601	10483952
YP_004388769.1	CDS	Alide2_2905	NC_015422.1	3028287	3028961	D	KEGG: vap:Vapar_5216 transcriptional regulator, GntR family; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR, C-terminal; GntR family transcriptional regulator	3028287..3028961	Alicycliphilus denitrificans K601	10483953
YP_004388770.1	CDS	Alide2_2906	NC_015422.1	3028985	3029935	D	PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: dia:Dtpsy_1777 pseudouridine synthase; pseudouridine synthase	3028985..3029935	Alicycliphilus denitrificans K601	10483954
YP_004388771.1	CDS	Alide2_2907	NC_015422.1	3029910	3032615	R	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: dia:Dtpsy_1832 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	complement(3029910..3032615)	Alicycliphilus denitrificans K601	10483955
YP_004388772.1	CDS	Alide2_2908	NC_015422.1	3032662	3034005	R	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: dia:Dtpsy_1831 3-deoxy-D-manno-octulosonic-acid transferase domain protein; Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein	complement(3032662..3034005)	Alicycliphilus denitrificans K601	10483956
YP_004388773.1	CDS	Alide2_2909	NC_015422.1	3034026	3035414	R	KEGG: dia:Dtpsy_1830 phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; phosphoglucomutase	complement(3034026..3035414)	Alicycliphilus denitrificans K601	10483957
YP_004388774.1	CDS	Alide2_2910	NC_015422.1	3035483	3036454	R	KEGG: dac:Daci_0982 hypothetical protein; hypothetical protein	complement(3035483..3036454)	Alicycliphilus denitrificans K601	10483958
YP_004388775.1	CDS	Alide2_2911	NC_015422.1	3036467	3037441	R	KEGG: vei:Veis_0062 hypothetical protein; hypothetical protein	complement(3036467..3037441)	Alicycliphilus denitrificans K601	10483959
YP_004388776.1	CDS	Alide2_2912	NC_015422.1	3037536	3038342	R	PFAM: KduI/IolB isomerase; KEGG: rsc:RCFBP_20182 myo-inositol catabolism protein, protein IolB; KduI/IolB isomerase	complement(3037536..3038342)	Alicycliphilus denitrificans K601	10483960
YP_004388777.1	CDS	Alide2_2913	NC_015422.1	3038339	3040294	R	KEGG: dac:Daci_0985 ribokinase-like domain-containing protein; PFAM: Protein of unknown function DUF2090; Carbohydrate/purine kinase; 5-dehydro-2-deoxygluconokinase	complement(3038339..3040294)	Alicycliphilus denitrificans K601	10483961
YP_004388778.1	CDS	Alide2_2914	NC_015422.1	3040389	3041261	D	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: dac:Daci_0986 RpiR family transcriptional regulator; RpiR family transcriptional regulator	3040389..3041261	Alicycliphilus denitrificans K601	10483962
YP_004388779.1	CDS	Alide2_2915	NC_015422.1	3041323	3042822	D	KEGG: ajs:Ajs_2020 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / DNA-3-methyladenine glycosylase II / transcriptional regulator Ada; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; HTH transcriptional regulator, AraC; HhH-GPD domain; SMART: Helix-turn-helix, AraC type, DNA binding domain; HhH-GPD domain; AraC family transcriptional regulator	3041323..3042822	Alicycliphilus denitrificans K601	10483963
YP_004388780.1	CDS	Alide2_2916	NC_015422.1	3042881	3043408	D	KEGG: dia:Dtpsy_1828 methylated-DNA/protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA/protein-cysteine methyltransferase	3042881..3043408	Alicycliphilus denitrificans K601	10483964
YP_004388781.1	CDS	Alide2_2917	NC_015422.1	3043405	3044328	D	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_1827 protein of unknown function DUF6 transmembrane; hypothetical protein	3043405..3044328	Alicycliphilus denitrificans K601	10483965
YP_004388782.1	CDS	Alide2_2918	NC_015422.1	3044348	3045310	R	KEGG: aav:Aave_3080 putative adenylate/guanylate cyclase; PFAM: Adenylyl cyclase class-3/4/guanylyl cyclase; Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; Adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase	complement(3044348..3045310)	Alicycliphilus denitrificans K601	10483966
YP_004388783.1	CDS	Alide2_2919	NC_015422.1	3045516	3046487	R	KEGG: dia:Dtpsy_1593 muramoyltetrapeptide carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A; muramoyltetrapeptide carboxypeptidase	complement(3045516..3046487)	Alicycliphilus denitrificans K601	10483967
YP_004388784.1	CDS	Alide2_2920	NC_015422.1	3046471	3047547	R	PFAM: CMP/dCMP deaminase, zinc-binding; Alpha/beta hydrolase fold-1; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase zinc-binding protein	complement(3046471..3047547)	Alicycliphilus denitrificans K601	10483968
YP_004388785.1	CDS	Alide2_2921	NC_015422.1	3047595	3048227	R	PFAM: Negative transcriptional regulator; KEGG: vap:Vapar_2794 FMN-binding negative transcriptional regulator; FMN-binding negative transcriptional regulator	complement(3047595..3048227)	Alicycliphilus denitrificans K601	10483969
YP_004388786.1	CDS	Alide2_2922	NC_015422.1	3048280	3050253	D	PFAM: Peptidase U32; KEGG: dia:Dtpsy_1589 peptidase U32; peptidase U32	3048280..3050253	Alicycliphilus denitrificans K601	10483970
YP_004388787.1	CDS	Alide2_2923	NC_015422.1	3050339	3051616	D	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: dia:Dtpsy_1588 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-acetylhomoserine/O-acetylserine sulfhydrylase	3050339..3051616	Alicycliphilus denitrificans K601	10483971
YP_004388788.1	CDS	Alide2_2924	NC_015422.1	3051666	3052961	R	KEGG: dia:Dtpsy_1587 protein of unknown function DUF323; TIGRFAM: Conserved hypothetical protein CHP03440; PFAM: Sulphatase-modifying factor; hypothetical protein	complement(3051666..3052961)	Alicycliphilus denitrificans K601	10483972
YP_004388789.1	CDS	Alide2_2925	NC_015422.1	3052975	3053949	R	KEGG: dia:Dtpsy_1586 methyltransferase; TIGRFAM: Methyltransferase-like; PFAM: Protein of unknown function DUF2260; methyltransferase	complement(3052975..3053949)	Alicycliphilus denitrificans K601	10483973
YP_004388790.1	CDS	Alide2_2926	NC_015422.1	3054199	3054789	R	KEGG: dia:Dtpsy_1585 OmpW family protein; manually curated; PFAM: Outer membrane protein, OmpW; OmpW family protein	complement(3054199..3054789)	Alicycliphilus denitrificans K601	10483974
YP_004388791.1	CDS	Alide2_2927	NC_015422.1	3054934	3055926	R	PFAM: Protein of unknown function DUF808; KEGG: ajs:Ajs_2290 hypothetical protein; hypothetical protein	complement(3054934..3055926)	Alicycliphilus denitrificans K601	10483975
YP_004388792.1	CDS	Alide2_2928	NC_015422.1	3056030	3060049	R	TIGRFAM: Phosphoribosylformylglycinamidine synthase; KEGG: dia:Dtpsy_1582 phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; phosphoribosylformylglycinamidine synthase	complement(3056030..3060049)	Alicycliphilus denitrificans K601	10483976
YP_004388793.1	CDS	Alide2_2929	NC_015422.1	3060230	3061048	D	TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; KEGG: dia:Dtpsy_1581 methionine aminopeptidase, type I; PFAM: Peptidase M24, structural domain; methionine aminopeptidase, type I	3060230..3061048	Alicycliphilus denitrificans K601	10483977
YP_004388794.1	CDS	Alide2_2930	NC_015422.1	3061096	3063720	D	KEGG: dia:Dtpsy_1580 PII uridylyl-transferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Domain of unknown function DUF294, nucleotidyltransferase putative; Metal-dependent phosphohydrolase, HD subdomain; Amino acid-binding ACT; TIGRFAM: Protein-PII uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; UTP-GlnB uridylyltransferase, GlnD	3061096..3063720	Alicycliphilus denitrificans K601	10483978
YP_004388795.1	CDS	Alide2_2931	NC_015422.1	3063730	3065208	R	KEGG: ctt:CtCNB1_3177 uracil-xanthine permease; TIGRFAM: Xanthine permease; Xanthine/uracil permease; PFAM: Xanthine/uracil/vitamin C permease; xanthine permease	complement(3063730..3065208)	Alicycliphilus denitrificans K601	10483979
YP_004388796.1	CDS	Alide2_2932	NC_015422.1	3065440	3065979	R	TIGRFAM: Formylmethionine deformylase; KEGG: dac:Daci_4855 peptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase	complement(3065440..3065979)	Alicycliphilus denitrificans K601	10483980
YP_004388797.1	CDS	Alide2_2933	NC_015422.1	3066073	3066492	D	PFAM: Protein of unknown function DUF454; KEGG: ajs:Ajs_2296 hypothetical protein; hypothetical protein	3066073..3066492	Alicycliphilus denitrificans K601	10483981
YP_004388798.1	CDS	Alide2_2935	NC_015422.1	3067326	3067652	D	PFAM: Protein of unknown function DUF3423; hypothetical protein	3067326..3067652	Alicycliphilus denitrificans K601	10483985
YP_004388799.1	CDS	Alide2_2936	NC_015422.1	3067654	3068256	D	KEGG: pzu:PHZ_c2128 hypothetical protein; hypothetical protein	3067654..3068256	Alicycliphilus denitrificans K601	10483986
YP_004388800.1	CDS	Alide2_2937	NC_015422.1	3068541	3069800	R	TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; KEGG: aav:Aave_2572 isocitrate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; NADP-dependent isocitrate dehydrogenase	complement(3068541..3069800)	Alicycliphilus denitrificans K601	10483987
YP_004388801.1	CDS	Alide2_2938	NC_015422.1	3070323	3070796	D	PFAM: Protein of unknown function DUF192; KEGG: dia:Dtpsy_1560 protein of unknown function DUF192; hypothetical protein	3070323..3070796	Alicycliphilus denitrificans K601	10483988
YP_004388802.1	CDS	Alide2_2939	NC_015422.1	3070866	3073103	R	TIGRFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; NADP-dependent isocitrate dehydrogenase	complement(3070866..3073103)	Alicycliphilus denitrificans K601	10483989
YP_004388803.1	CDS	Alide2_2940	NC_015422.1	3073403	3073984	R	KEGG: ajs:Ajs_2301 superoxide dismutase; PFAM: Manganese/iron superoxide dismutase, C-terminal; Manganese/iron superoxide dismutase, N-terminal; Superoxide dismutase	complement(3073403..3073984)	Alicycliphilus denitrificans K601	10483990
YP_004388804.1	CDS	Alide2_2941	NC_015422.1	3074127	3075464	R	PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exonuclease VII, large subunit; KEGG: ajs:Ajs_2302 exodeoxyribonuclease VII large subunit; exodeoxyribonuclease 7 large subunit	complement(3074127..3075464)	Alicycliphilus denitrificans K601	10483991
YP_004388805.1	CDS	Alide2_2942	NC_015422.1	3075827	3076465	D	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_1556 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel	3075827..3076465	Alicycliphilus denitrificans K601	10483992
YP_004388806.1	CDS	Alide2_2943	NC_015422.1	3076473	3076898	D	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dia:Dtpsy_1555 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR	3076473..3076898	Alicycliphilus denitrificans K601	10483993
YP_004388807.1	CDS	Alide2_2944	NC_015422.1	3076903	3077901	D	TIGRFAM: Tetraacyldisaccharide 4'-kinase; KEGG: ajs:Ajs_2305 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase	3076903..3077901	Alicycliphilus denitrificans K601	10483994
YP_004388808.1	CDS	Alide2_2945	NC_015422.1	3077915	3078097	D	PFAM: Uncharacterised protein family UPF0434/Trm112; KEGG: dia:Dtpsy_1553 protein of unknown function DUF343; hypothetical protein	3077915..3078097	Alicycliphilus denitrificans K601	10483995
YP_004388809.1	CDS	Alide2_2946	NC_015422.1	3078094	3078879	D	PFAM: Acylneuraminate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: ajs:Ajs_2307 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase	3078094..3078879	Alicycliphilus denitrificans K601	10483996
YP_004388810.1	CDS	Alide2_2947	NC_015422.1	3078978	3079634	D	KEGG: dia:Dtpsy_1551 adenylate kinase; TIGRFAM: Adenylate kinase, subfamily; PFAM: Adenylate kinase; Adenylate kinase, active site lid domain; adenylate kinase	3078978..3079634	Alicycliphilus denitrificans K601	10483997
YP_004388811.1	CDS	Alide2_2948	NC_015422.1	3079707	3080669	R	PFAM: Asparaginase/glutaminase; KEGG: dia:Dtpsy_1550 asparaginase; SMART: Asparaginase/glutaminase; asparaginase	complement(3079707..3080669)	Alicycliphilus denitrificans K601	10483998
YP_004388812.1	CDS	Alide2_2949	NC_015422.1	3080749	3081423	D	KEGG: dia:Dtpsy_1549 LexA repressor; TIGRFAM: Peptidase S24, LexA repressor; PFAM: LexA, DNA-binding domain; Peptidase S24/S26A/S26B, conserved region; SOS-response transcriptional repressor, LexA	3080749..3081423	Alicycliphilus denitrificans K601	10483999
YP_004388813.1	CDS	Alide2_2950	NC_015422.1	3081578	3081922	D	KEGG: ajs:Ajs_2311 hypothetical protein; hypothetical protein	3081578..3081922	Alicycliphilus denitrificans K601	10484000
YP_004388814.1	CDS	Alide2_2951	NC_015422.1	3081930	3085910	R	TIGRFAM: RNA helicase, ATP-dependent DEAH box, HrpA type; PFAM: Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; KEGG: dia:Dtpsy_1546 ATP-dependent helicase HrpA; SMART: Helicase-associated domain; DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal; ATP-dependent helicase HrpA	complement(3081930..3085910)	Alicycliphilus denitrificans K601	10484001
YP_004388815.1	CDS	Alide2_2952	NC_015422.1	3085966	3087159	R	TIGRFAM: Thiolase; KEGG: ajs:Ajs_2317 acetyl-CoA acetyltransferases; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	complement(3085966..3087159)	Alicycliphilus denitrificans K601	10484002
YP_004388816.1	CDS	Alide2_2953	NC_015422.1	3087156	3088631	R	KEGG: dia:Dtpsy_1541 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	complement(3087156..3088631)	Alicycliphilus denitrificans K601	10484003
YP_004388817.1	CDS	Alide2_2954	NC_015422.1	3088628	3089212	R	PFAM: BioY protein; KEGG: dia:Dtpsy_1540 BioY protein; BioY protein	complement(3088628..3089212)	Alicycliphilus denitrificans K601	10484004
YP_004388818.1	CDS	Alide2_2955	NC_015422.1	3089250	3089843	R	PFAM: Cobalt transport protein; KEGG: ajs:Ajs_2320 cobalt transport protein; ABC transporter permease	complement(3089250..3089843)	Alicycliphilus denitrificans K601	10484005
YP_004388819.1	CDS	Alide2_2956	NC_015422.1	3089862	3090635	R	KEGG: dia:Dtpsy_1538 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(3089862..3090635)	Alicycliphilus denitrificans K601	10484006
YP_004388820.1	CDS	Alide2_2957	NC_015422.1	3091066	3091644	D	KEGG: bte:BTH_II1296 hypothetical protein; hypothetical protein	3091066..3091644	Alicycliphilus denitrificans K601	10484007
YP_004388821.1	CDS	Alide2_2958	NC_015422.1	3091691	3092125	D	KEGG: gdj:Gdia_1658 hypothetical protein; hypothetical protein	3091691..3092125	Alicycliphilus denitrificans K601	10484008
YP_004388822.1	CDS	Alide2_2959	NC_015422.1	3092179	3092628	D	TIGRFAM: Glyoxalase I; KEGG: dia:Dtpsy_1870 lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase	3092179..3092628	Alicycliphilus denitrificans K601	10484009
YP_004388823.1	CDS	Alide2_2960	NC_015422.1	3092798	3093559	D	KEGG: vap:Vapar_2120 hypothetical protein; hypothetical protein	3092798..3093559	Alicycliphilus denitrificans K601	10484010
YP_004388824.1	CDS	Alide2_2961	NC_015422.1	3093556	3093756	D	hypothetical protein	3093556..3093756	Alicycliphilus denitrificans K601	10484011
YP_004388825.1	CDS	Alide2_2962	NC_015422.1	3093990	3094493	R	manually curated; KEGG: bcm:Bcenmc03_6935 hypothetical protein; hypothetical protein	complement(3093990..3094493)	Alicycliphilus denitrificans K601	10484012
YP_004388826.1	CDS	Alide2_2963	NC_015422.1	3094932	3095735	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(3094932..3095735)	Alicycliphilus denitrificans K601	10484013
YP_004388827.1	CDS	Alide2_2964	NC_015422.1	3095725	3097251	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(3095725..3097251)	Alicycliphilus denitrificans K601	10484014
YP_004388828.1	CDS	Alide2_2965	NC_015422.1	3097781	3098095	D	PFAM: Protein of unknown function DUF736; KEGG: dac:Daci_0462 hypothetical protein; hypothetical protein	3097781..3098095	Alicycliphilus denitrificans K601	10484015
YP_004388829.1	CDS	Alide2_2966	NC_015422.1	3098450	3098740	R	KEGG: dac:Daci_0461 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(3098450..3098740)	Alicycliphilus denitrificans K601	10484016
YP_004388830.1	CDS	Alide2_2967	NC_015422.1	3098952	3099299	D	KEGG: tgr:Tgr7_1875 putative lipoprotein; hypothetical protein	3098952..3099299	Alicycliphilus denitrificans K601	10484017
YP_004388831.1	CDS	Alide2_2968	NC_015422.1	3099593	3100342	D	PFAM: Protein of unknown function DUF2285; KEGG: bpr:GBP346_A0953 hypothetical protein; hypothetical protein	3099593..3100342	Alicycliphilus denitrificans K601	10484018
YP_004388832.1	CDS	Alide2_2969	NC_015422.1	3100426	3100707	D	KEGG: rpi:Rpic_2619 hypothetical protein; hypothetical protein	3100426..3100707	Alicycliphilus denitrificans K601	10484019
YP_004388833.1	CDS	Alide2_2970	NC_015422.1	3100734	3101591	D	PFAM: Replication initiator protein A; KEGG: ajs:Ajs_2653 putative replication initiator and transcription repressor protein; Replication initiator protein A	3100734..3101591	Alicycliphilus denitrificans K601	10484020
YP_004388834.1	CDS	Alide2_2971	NC_015422.1	3101881	3102519	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dac:Daci_2720 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase	3101881..3102519	Alicycliphilus denitrificans K601	10484021
YP_004388835.1	CDS	Alide2_2972	NC_015422.1	3102516	3102800	D	KEGG: bpt:Bpet2187 hypothetical protein; hypothetical protein	3102516..3102800	Alicycliphilus denitrificans K601	10484022
YP_004388836.1	CDS	Alide2_2973	NC_015422.1	3102797	3103342	D	KEGG: rme:Rmet_1257 hypothetical protein; hypothetical protein	3102797..3103342	Alicycliphilus denitrificans K601	10484023
YP_004388837.1	CDS	Alide2_2974	NC_015422.1	3103339	3103938	D	PFAM: Peptidase S26, conserved region; KEGG: dia:Dtpsy_1292 TraF peptidase. Serine peptidase. MEROPS family S26C; peptidase S26	3103339..3103938	Alicycliphilus denitrificans K601	10484024
YP_004388838.1	CDS	Alide2_2975	NC_015422.1	3104399	3106381	D	KEGG: dac:Daci_0453 hypothetical protein; hypothetical protein	3104399..3106381	Alicycliphilus denitrificans K601	10484025
YP_004388839.1	CDS	Alide2_2976	NC_015422.1	3106387	3107400	R	PFAM: Ferrochelatase; TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: ajs:Ajs_1652 ferrochelatase; ferrochelatase	complement(3106387..3107400)	Alicycliphilus denitrificans K601	10484026
YP_004388840.1	CDS	Alide2_2977	NC_015422.1	3107475	3108035	R	PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; KEGG: mxa:MXAN_6138 riboflavin biosynthesis protein RibD domain-containing protein; bifunctional deaminase-reductase domain-containing protein	complement(3107475..3108035)	Alicycliphilus denitrificans K601	10484027
YP_004388841.1	CDS	Alide2_2978	NC_015422.1	3108094	3110652	R	PFAM: Uncharacterised protein family UPF0753; KEGG: mei:Msip34_2093 hypothetical protein; hypothetical protein	complement(3108094..3110652)	Alicycliphilus denitrificans K601	10484028
YP_004388842.1	CDS	Alide2_2979	NC_015422.1	3110679	3112244	R	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: mei:Msip34_2092 NADH dehydrogenase subunit L; NADH/Ubiquinone/plastoquinone (complex I)	complement(3110679..3112244)	Alicycliphilus denitrificans K601	10484029
YP_004388843.1	CDS	Alide2_2980	NC_015422.1	3112344	3113261	D	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: mep:MPQ_2042 transcriptional regulator, LysR family; LysR family transcriptional regulator	3112344..3113261	Alicycliphilus denitrificans K601	10484030
YP_004388844.1	CDS	Alide2_2981	NC_015422.1	3113406	3114386	R	KEGG: lch:Lcho_3347 integral membrane protein TerC; TIGRFAM: Integral membrane protein TerC, riboswitch-linked; PFAM: Integral membrane protein TerC; TerC family integral membrane protein	complement(3113406..3114386)	Alicycliphilus denitrificans K601	10484031
YP_004388845.1	CDS	Alide2_2982	NC_015422.1	3114442	3114849	R	KEGG: lch:Lcho_3349 hypothetical protein; hypothetical protein	complement(3114442..3114849)	Alicycliphilus denitrificans K601	10484032
YP_004388846.1	CDS	Alide2_2983	NC_015422.1	3114915	3115145	R	KEGG: rme:Rmet_5308 hypothetical protein; hypothetical protein	complement(3114915..3115145)	Alicycliphilus denitrificans K601	10484033
YP_004388847.1	CDS	Alide2_2984	NC_015422.1	3115266	3116192	D	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: tin:Tint_2185 transcriptional regulator, LysR family; LysR family transcriptional regulator	3115266..3116192	Alicycliphilus denitrificans K601	10484034
YP_004388848.1	CDS	Alide2_2985	NC_015422.1	3116229	3116909	D	KEGG: reu:Reut_A0042 glutathione peroxidase; manually curated; PFAM: Glutathione peroxidase; glutathione peroxidase	3116229..3116909	Alicycliphilus denitrificans K601	10484035
YP_004388849.1	CDS	Alide2_2986	NC_015422.1	3116978	3117880	R	PFAM: NAD-dependent epimerase/dehydratase; Domain of unknown function DUF1731, C-terminal; KEGG: bav:BAV2083 hypothetical protein; NAD-dependent epimerase/dehydratase	complement(3116978..3117880)	Alicycliphilus denitrificans K601	10484036
YP_004388850.1	CDS	Alide2_2987	NC_015422.1	3117910	3118608	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1994 hypothetical protein; short-chain dehydrogenase/reductase SDR	complement(3117910..3118608)	Alicycliphilus denitrificans K601	10484037
YP_004388851.1	CDS	Alide2_2988	NC_015422.1	3118633	3120171	R	PFAM: Deoxyribodipyrimidine photolyase-related protein; KEGG: ctt:CtCNB1_1993 deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein	complement(3118633..3120171)	Alicycliphilus denitrificans K601	10484038
YP_004388852.1	CDS	Alide2_2989	NC_015422.1	3120400	3121326	R	KEGG: reu:Reut_C6236 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; beta-Ig-H3/fasciclin	complement(3120400..3121326)	Alicycliphilus denitrificans K601	10484039
YP_004388853.1	CDS	Alide2_2990	NC_015422.1	3121434	3122984	R	PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; KEGG: tmz:Tmz1t_3951 deoxyribodipyrimidine photo-lyase; DNA photolyase FAD-binding protein	complement(3121434..3122984)	Alicycliphilus denitrificans K601	10484040
YP_004388854.1	CDS	Alide2_2991	NC_015422.1	3122998	3123600	R	PFAM: Lipocalin-like; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin; lipocalin family protein	complement(3122998..3123600)	Alicycliphilus denitrificans K601	10484041
YP_004388855.1	CDS	Alide2_2992	NC_015422.1	3123619	3124593	R	KEGG: reu:Reut_C6238 regulatory protein, MerR; PFAM: Cobalamin (vitamin B12)-binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; cobalamin B12-binding domain-containing protein	complement(3123619..3124593)	Alicycliphilus denitrificans K601	10484042
YP_004388856.1	CDS	Alide2_2993	NC_015422.1	3124712	3126016	D	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: bav:BAV2082 dehydrogenase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein	3124712..3126016	Alicycliphilus denitrificans K601	10484043
YP_004388857.1	CDS	Alide2_2994	NC_015422.1	3126013	3126837	D	PFAM: Protein of unknown function DUF1365; KEGG: bav:BAV2081 hypothetical protein; hypothetical protein	3126013..3126837	Alicycliphilus denitrificans K601	10484044
YP_004388858.1	CDS	Alide2_2995	NC_015422.1	3126840	3128060	D	KEGG: dia:Dtpsy_2396 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase; Cyclopropane-fatty-acyl-phospholipid synthase	3126840..3128060	Alicycliphilus denitrificans K601	10484045
YP_004388859.1	CDS	Alide2_2996	NC_015422.1	3128159	3128686	D	KEGG: dia:Dtpsy_2394 hypothetical protein; hypothetical protein	3128159..3128686	Alicycliphilus denitrificans K601	10484046
YP_004388860.1	CDS	Alide2_2997	NC_015422.1	3128683	3130002	D	PFAM: Major facilitator superfamily MFS-1; KEGG: bav:BAV2078 transporter; major facilitator superfamily protein	3128683..3130002	Alicycliphilus denitrificans K601	10484047
YP_004388861.1	CDS	Alide2_2998	NC_015422.1	3129999	3130535	D	KEGG: dia:Dtpsy_2392 putative lipoprotein; hypothetical protein	3129999..3130535	Alicycliphilus denitrificans K601	10484048
YP_004388862.1	CDS	Alide2_2999	NC_015422.1	3130540	3131322	D	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: bav:BAV2076 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR	3130540..3131322	Alicycliphilus denitrificans K601	10484049
YP_004388863.1	CDS	Alide2_3000	NC_015422.1	3131325	3131840	D	KEGG: bav:BAV2075 isomerase; isomerase	3131325..3131840	Alicycliphilus denitrificans K601	10484050
YP_004388864.1	CDS	Alide2_3001	NC_015422.1	3131818	3132507	D	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_1800 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein	3131818..3132507	Alicycliphilus denitrificans K601	10484051
YP_004388865.1	CDS	Alide2_3002	NC_015422.1	3132562	3134025	D	KEGG: ajs:Ajs_1801 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding/Cryptochrome, C-terminal; DNA photolyase, N-terminal; deoxyribodipyrimidine photo-lyase	3132562..3134025	Alicycliphilus denitrificans K601	10484052
YP_004388866.1	CDS	Alide2_3003	NC_015422.1	3134038	3134568	D	PFAM: HTH transcriptional regulator, LysR; LysR, substrate-binding; KEGG: dia:Dtpsy_3510 transcriptional regulator, LysR family; LysR family transcriptional regulator	3134038..3134568	Alicycliphilus denitrificans K601	10484053
YP_004388867.1	CDS	Alide2_3004	NC_015422.1	3134628	3136154	D	KEGG: bvi:Bcep1808_2622 integrase catalytic subunit; integrase catalytic subunit	3134628..3136154	Alicycliphilus denitrificans K601	10484054
YP_004388868.1	CDS	Alide2_3005	NC_015422.1	3136147	3136962	D	KEGG: mpt:Mpe_A2996 putative transposase; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	3136147..3136962	Alicycliphilus denitrificans K601	10484055
YP_004388869.1	CDS	Alide2_3006	NC_015422.1	3137029	3137955	R	PFAM: Protein of unknown function DUF1016; KEGG: pau:PA14_31270 hypothetical protein; hypothetical protein	complement(3137029..3137955)	Alicycliphilus denitrificans K601	10484056
YP_004388870.1	CDS	Alide2_3007	NC_015422.1	3137952	3139157	R	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_2625 phage integrase family protein; integrase family protein	complement(3137952..3139157)	Alicycliphilus denitrificans K601	10484057
YP_004388871.1	CDS	Alide2_3008	NC_015422.1	3139389	3140294	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: bpt:Bpet1402 transcriptional regulator CatR; LysR family transcriptional regulator	3139389..3140294	Alicycliphilus denitrificans K601	10484058
YP_004388872.1	CDS	Alide2_3009	NC_015422.1	3140359	3140997	R	TIGRFAM: KDPG/KHG aldolase; KEGG: ajs:Ajs_2048 2-keto-3-deoxy-phosphogluconate aldolase; PFAM: KDPG/KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	complement(3140359..3140997)	Alicycliphilus denitrificans K601	10484059
YP_004388873.1	CDS	Alide2_3010	NC_015422.1	3140988	3142805	R	TIGRFAM: 6-phosphogluconate dehydratase; KEGG: ajs:Ajs_2049 phosphogluconate dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase	complement(3140988..3142805)	Alicycliphilus denitrificans K601	10484060
YP_004388874.1	CDS	Alide2_3011	NC_015422.1	3142932	3143942	R	KEGG: dia:Dtpsy_1873 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; TRAP dicarboxylate transporter subunit DctP	complement(3142932..3143942)	Alicycliphilus denitrificans K601	10484061
YP_004388875.1	CDS	Alide2_3012	NC_015422.1	3143999	3145279	R	KEGG: dia:Dtpsy_1874 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	complement(3143999..3145279)	Alicycliphilus denitrificans K601	10484062
YP_004388876.1	CDS	Alide2_3013	NC_015422.1	3145290	3145811	R	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dia:Dtpsy_1875 tripartite ATP-independent periplasmic transporter DctQ component; TRAP dicarboxylate transporter subunit DctQ	complement(3145290..3145811)	Alicycliphilus denitrificans K601	10484063
YP_004388877.1	CDS	Alide2_3014	NC_015422.1	3145808	3146362	R	PFAM: Shikimate kinase; manually curated; KEGG: ajs:Ajs_2053 carbohydrate kinase; TIGRFAM: Carbohydrate kinase, thermoresistant glucokinase; carbohydrate kinase, thermoresistant glucokinase family	complement(3145808..3146362)	Alicycliphilus denitrificans K601	10484064
YP_004388878.1	CDS	Alide2_3015	NC_015422.1	3146567	3147592	D	KEGG: ajs:Ajs_2054 LacI family transcription regulator; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator	3146567..3147592	Alicycliphilus denitrificans K601	10484065
YP_004388879.1	CDS	Alide2_3016	NC_015422.1	3147638	3149986	R	TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpA; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_1896 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease, ATP-binding subunit clpA	complement(3147638..3149986)	Alicycliphilus denitrificans K601	10484066
YP_004388880.1	CDS	Alide2_3017	NC_015422.1	3150046	3150408	R	KEGG: dia:Dtpsy_1897 ATP-dependent Clp protease adaptor protein ClpS; HAMAP: ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; ATP-dependent Clp protease adapter protein clpS	complement(3150046..3150408)	Alicycliphilus denitrificans K601	10484067
YP_004388881.1	CDS	Alide2_3018	NC_015422.1	3150468	3154016	R	SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dia:Dtpsy_1898 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA polymerase III subunit alpha	complement(3150468..3154016)	Alicycliphilus denitrificans K601	10484068
YP_004388882.1	CDS	Alide2_3019	NC_015422.1	3154145	3154942	D	TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: dia:Dtpsy_1899 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein YfiO	3154145..3154942	Alicycliphilus denitrificans K601	10484069
YP_004388883.1	CDS	Alide2_3020	NC_015422.1	3154905	3156977	R	SMART: Helicase, ATP-dependent, c2 type; KEGG: ajs:Ajs_1828 helicase C2; helicase c2	complement(3154905..3156977)	Alicycliphilus denitrificans K601	10484070
YP_004388884.1	CDS	Alide2_3021	NC_015422.1	3157095	3157898	D	KEGG: dia:Dtpsy_1901 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase	3157095..3157898	Alicycliphilus denitrificans K601	10484071
YP_004388885.1	CDS	Alide2_3022	NC_015422.1	3157902	3158597	R	KEGG: ajs:Ajs_1826 hypothetical protein; hypothetical protein	complement(3157902..3158597)	Alicycliphilus denitrificans K601	10484072
YP_004388886.1	CDS	Alide2_3023	NC_015422.1	3158594	3159691	R	PFAM: ATPase, AFG1-like; KEGG: dia:Dtpsy_1903 AFG1-family ATPase; AFG1 family ATPase	complement(3158594..3159691)	Alicycliphilus denitrificans K601	10484073
YP_004388887.1	CDS	Alide2_3024	NC_015422.1	3159768	3161195	R	TIGRFAM: Dihydrolipoamide dehydrogenase; KEGG: ajs:Ajs_1824 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; dihydrolipoamide dehydrogenase	complement(3159768..3161195)	Alicycliphilus denitrificans K601	10484074
YP_004388888.1	CDS	Alide2_3025	NC_015422.1	3161281	3162537	R	TIGRFAM: Dihydrolipoamide succinyltransferase; KEGG: dia:Dtpsy_1905 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase	complement(3161281..3162537)	Alicycliphilus denitrificans K601	10484075
YP_004388889.1	CDS	Alide2_3026	NC_015422.1	3162590	3165466	R	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component; KEGG: ajs:Ajs_1822 2-oxoglutarate dehydrogenase E1 component; PFAM: Transketolase-like, pyrimidine-binding domain; Dehydrogenase, E1 component; 2-oxoglutarate dehydrogenase, E1 subunit	complement(3162590..3165466)	Alicycliphilus denitrificans K601	10484076
YP_004388890.1	CDS	Alide2_3027	NC_015422.1	3165672	3166730	D	PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_1907 protein of unknown function UPF0118; hypothetical protein	3165672..3166730	Alicycliphilus denitrificans K601	10484077
YP_004388891.1	CDS	Alide2_3028	NC_015422.1	3166798	3167781	R	KEGG: dia:Dtpsy_1908 hypothetical protein; hypothetical protein	complement(3166798..3167781)	Alicycliphilus denitrificans K601	10484078
YP_004388892.1	CDS	Alide2_3029	NC_015422.1	3167832	3168194	R	KEGG: dia:Dtpsy_1909 hypothetical protein; hypothetical protein	complement(3167832..3168194)	Alicycliphilus denitrificans K601	10484079
YP_004388893.1	CDS	Alide2_3030	NC_015422.1	3168209	3169561	R	PFAM: Protein of unknown function DUF1446; KEGG: dia:Dtpsy_1910 protein of unknown function DUF1446; hypothetical protein	complement(3168209..3169561)	Alicycliphilus denitrificans K601	10484080
YP_004388894.1	CDS	Alide2_3031	NC_015422.1	3169654	3170559	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_1817 LysR family transcriptional regulator; LysR family transcriptional regulator	3169654..3170559	Alicycliphilus denitrificans K601	10484081
YP_004388895.1	CDS	Alide2_3032	NC_015422.1	3170697	3171563	D	PFAM: UspA; KEGG: ajs:Ajs_1816 UspA domain-containing protein; UspA domain-containing protein	3170697..3171563	Alicycliphilus denitrificans K601	10484082
YP_004388896.1	CDS	Alide2_3033	NC_015422.1	3171583	3173220	R	PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: dia:Dtpsy_1915 ABC transporter related; SMART: ATPase, AAA+ type, core; Nickel-transporting ATPase, polyamine-transporting ATPase	complement(3171583..3173220)	Alicycliphilus denitrificans K601	10484083
YP_004388897.1	CDS	Alide2_3034	NC_015422.1	3173222	3174262	R	PFAM: Binding-protein-dependent transport systems inner membrane component; Mitochondrial distribution and morphology protein family 31/32, fungi; KEGG: dia:Dtpsy_1916 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(3173222..3174262)	Alicycliphilus denitrificans K601	10484084
YP_004388898.1	CDS	Alide2_3035	NC_015422.1	3174246	3175283	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_1811 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(3174246..3175283)	Alicycliphilus denitrificans K601	10484085
YP_004388899.1	CDS	Alide2_3036	NC_015422.1	3175301	3175762	R	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: dia:Dtpsy_2487 putative protein-S-isoprenylcysteine methyltransferase-like protein; Isoprenylcysteine carboxyl methyltransferase	complement(3175301..3175762)	Alicycliphilus denitrificans K601	10484086
YP_004388900.1	CDS	Alide2_3037	NC_015422.1	3175808	3177631	R	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_1918 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein	complement(3175808..3177631)	Alicycliphilus denitrificans K601	10484087
YP_004388901.1	CDS	Alide2_3038	NC_015422.1	3177677	3178477	D	KEGG: dia:Dtpsy_1919 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; enoyl-ACP reductase (NADH)	3177677..3178477	Alicycliphilus denitrificans K601	10484088
YP_004388902.1	CDS	Alide2_3039	NC_015422.1	3178573	3179481	D	PFAM: Drug/metabolite transporter; KEGG: rsc:RCFBP_10755 multidrug resistance efflux transporter; hypothetical protein	3178573..3179481	Alicycliphilus denitrificans K601	10484089
YP_004388903.1	CDS	Alide2_3040	NC_015422.1	3179541	3179765	R	PFAM: Protein of unknown function DUF465; KEGG: cvi:CV_3311 hypothetical protein; hypothetical protein	complement(3179541..3179765)	Alicycliphilus denitrificans K601	10484090
YP_004388904.1	CDS	Alide2_3041	NC_015422.1	3179914	3180828	D	KEGG: dia:Dtpsy_2251 DNA ligase; PFAM: DNA ligase, ATP-dependent, central; DNA ligase (ATP)	3179914..3180828	Alicycliphilus denitrificans K601	10484091
YP_004388905.1	CDS	Alide2_3042	NC_015422.1	3181003	3181752	D	KEGG: aav:Aave_4673 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein	3181003..3181752	Alicycliphilus denitrificans K601	10484092
YP_004388906.1	CDS	Alide2_3043	NC_015422.1	3181813	3184173	R	KEGG: ajs:Ajs_2762 ornithine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major domain; Orn/Lys/Arg decarboxylase, N-terminal; Orn/Lys/Arg decarboxylase, C-terminal; Lysine decarboxylase	complement(3181813..3184173)	Alicycliphilus denitrificans K601	10484093
YP_004388907.1	CDS	Alide2_3044	NC_015422.1	3184322	3184753	D	KEGG: dia:Dtpsy_2253 hypothetical protein; hypothetical protein	3184322..3184753	Alicycliphilus denitrificans K601	10484094
YP_004388908.1	CDS	Alide2_3045	NC_015422.1	3184823	3185740	D	KEGG: dia:Dtpsy_2254 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; hypothetical protein	3184823..3185740	Alicycliphilus denitrificans K601	10484095
YP_004388909.1	CDS	Alide2_3046	NC_015422.1	3185737	3186639	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rfr:Rfer_0879 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(3185737..3186639)	Alicycliphilus denitrificans K601	10484096
YP_004388910.1	CDS	Alide2_3047	NC_015422.1	3186832	3188556	D	KEGG: ajs:Ajs_2520 thiamine pyrophosphate protein; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, central domain; acetolactate synthase	3186832..3188556	Alicycliphilus denitrificans K601	10484097
YP_004388911.1	CDS	Alide2_3049	NC_015422.1	3189677	3189808	D	hypothetical protein	3189677..3189808	Alicycliphilus denitrificans K601	10484100
YP_004388912.1	CDS	Alide2_3050	NC_015422.1	3189909	3190118	D	PFAM: Protein of unknown function DUF1778; KEGG: ctt:CtCNB1_1524 hypothetical protein; hypothetical protein	3189909..3190118	Alicycliphilus denitrificans K601	10484101
YP_004388913.1	CDS	Alide2_3051	NC_015422.1	3190105	3190893	D	manually curated; KEGG: ecc:c5378 hypothetical protein; hypothetical protein	3190105..3190893	Alicycliphilus denitrificans K601	10484102
YP_004388914.1	CDS	Alide2_3052	NC_015422.1	3190925	3191839	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(3190925..3191839)	Alicycliphilus denitrificans K601	10484103
YP_004388915.1	CDS	Alide2_3053	NC_015422.1	3191836	3192159	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(3191836..3192159)	Alicycliphilus denitrificans K601	10484104
YP_004388916.1	CDS	Alide2_3054	NC_015422.1	3192328	3193665	D	KEGG: rme:Rmet_3347 hypothetical protein; hypothetical protein	3192328..3193665	Alicycliphilus denitrificans K601	10484105
YP_004388917.1	CDS	Alide2_3055	NC_015422.1	3194285	3195100	R	PFAM: Transposase, IS4-like; KEGG: aav:Aave_4617 transposase, IS4 family protein; transposase IS4 family protein	complement(3194285..3195100)	Alicycliphilus denitrificans K601	10484106
YP_004388918.1	CDS	Alide2_3056	NC_015422.1	3195277	3196050	D	KEGG: pol:Bpro_5192 DNA/RNA non-specific endonuclease; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; Extracellular Endonuclease, subunit A; DNA/RNA non-specific endonuclease	3195277..3196050	Alicycliphilus denitrificans K601	10484107
YP_004388919.1	CDS	Alide2_3057	NC_015422.1	3196333	3197847	R	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	complement(3196333..3197847)	Alicycliphilus denitrificans K601	10484108
YP_004388920.1	CDS	Alide2_3058	NC_015422.1	3197930	3198262	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(3197930..3198262)	Alicycliphilus denitrificans K601	10484109
YP_004388921.1	CDS	Alide2_3059	NC_015422.1	3198259	3198687	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(3198259..3198687)	Alicycliphilus denitrificans K601	10484110
YP_004388922.1	CDS	Alide2_3060	NC_015422.1	3198747	3199073	D	manually curated; KEGG: alv:Alvin_3273 hypothetical protein; hypothetical protein	3198747..3199073	Alicycliphilus denitrificans K601	10484111
YP_004388923.1	CDS	Alide2_3061	NC_015422.1	3199176	3200150	D	TIGRFAM: Conserved hypothetical protein CHP03299, phage/plasmid-related; KEGG: ctt:CtCNB1_1504 hypothetical protein; phage/plasmid-like protein	3199176..3200150	Alicycliphilus denitrificans K601	10484112
YP_004388924.1	CDS	Alide2_3062	NC_015422.1	3200291	3201319	D	KEGG: har:HEAR0514 hypothetical protein; TIGRFAM: Putative phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease	3200291..3201319	Alicycliphilus denitrificans K601	10484113
YP_004388925.1	CDS	Alide2_3063	NC_015422.1	3201430	3202455	D	KEGG: pag:PLES_23531 hypothetical protein; hypothetical protein	3201430..3202455	Alicycliphilus denitrificans K601	10484114
YP_004388926.1	CDS	Alide2_3064	NC_015422.1	3202442	3203296	D	hypothetical protein	3202442..3203296	Alicycliphilus denitrificans K601	10484115
YP_004388927.1	CDS	Alide2_3065	NC_015422.1	3203609	3203770	R	hypothetical protein	complement(3203609..3203770)	Alicycliphilus denitrificans K601	10484116
YP_004388928.1	CDS	Alide2_3066	NC_015422.1	3203781	3204320	R	KEGG: abn:AB57_0651 hypothetical protein; hypothetical protein	complement(3203781..3204320)	Alicycliphilus denitrificans K601	10484117
YP_004388929.1	CDS	Alide2_3067	NC_015422.1	3204480	3204743	D	manually curated; PFAM: Helix-turn-helix type 3; KEGG: rsl:RPSI07_1481 putative HTH-type transcriptional regulator; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	3204480..3204743	Alicycliphilus denitrificans K601	10484118
YP_004388930.1	CDS	Alide2_3068	NC_015422.1	3204896	3206383	R	KEGG: dap:Dacet_0600 hypothetical protein; hypothetical protein	complement(3204896..3206383)	Alicycliphilus denitrificans K601	10484119
YP_004388931.1	CDS	Alide2_3069	NC_015422.1	3207053	3209449	D	KEGG: vap:Vapar_6015 DNA polymerase II; PFAM: DNA-directed DNA polymerase, family B, conserved region; DNA-directed DNA polymerase, family B, exonuclease domain; SMART: DNA-directed DNA polymerase, family B; DNA polymerase B region	3207053..3209449	Alicycliphilus denitrificans K601	10484120
YP_004388932.1	CDS	Alide2_3070	NC_015422.1	3209572	3210234	R	KEGG: ppg:PputGB1_4754 transposase; transposase	complement(3209572..3210234)	Alicycliphilus denitrificans K601	10484121
YP_004388933.1	CDS	Alide2_3071	NC_015422.1	3210462	3210644	R	PFAM: Prophage CP4-57 regulatory; KEGG: ppg:PputGB1_4755 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA	complement(3210462..3210644)	Alicycliphilus denitrificans K601	10484122
YP_004388934.1	CDS	Alide2_3072	NC_015422.1	3211314	3212240	D	KEGG: ppg:PputGB1_4756 hypothetical protein; hypothetical protein	3211314..3212240	Alicycliphilus denitrificans K601	10484123
YP_004388935.1	CDS	Alide2_3073	NC_015422.1	3212314	3213570	R	PFAM: Integrase, catalytic core, phage; KEGG: ecp:ECP_1909 Int/Topo IB signature motif; other site; integrase family protein	complement(3212314..3213570)	Alicycliphilus denitrificans K601	10484124
YP_004388936.1	CDS	Alide2_3074	NC_015422.1	3213930	3214907	D	PFAM: Lytic transglycosylase-like, catalytic; Sel1-like; KEGG: rfr:Rfer_0483 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	3213930..3214907	Alicycliphilus denitrificans K601	10484125
YP_004388937.1	CDS	Alide2_3079	NC_015422.1	3217826	3218659	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ctt:CtCNB1_1711 short-chain dehydrogenase/reductase SDR; SMART: Polyketide synthase/Fatty acid synthase, KR; 3-oxoacyl-ACP reductase	complement(3217826..3218659)	Alicycliphilus denitrificans K601	10484130
YP_004388938.1	CDS	Alide2_3080	NC_015422.1	3218675	3220279	R	KEGG: tfu:Tfu_1300 DitJ-like CoA ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(3218675..3220279)	Alicycliphilus denitrificans K601	10484131
YP_004388939.1	CDS	Alide2_3081	NC_015422.1	3220291	3220884	R	PFAM: Carboxymuconolactone decarboxylase; KEGG: kko:Kkor_1470 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase	complement(3220291..3220884)	Alicycliphilus denitrificans K601	10484132
YP_004388940.1	CDS	Alide2_3082	NC_015422.1	3220928	3221635	R	KEGG: axy:AXYL_02565 ABC transporter family protein 37; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(3220928..3221635)	Alicycliphilus denitrificans K601	10484133
YP_004388941.1	CDS	Alide2_3083	NC_015422.1	3221632	3222384	R	PFAM: ABC transporter-like; KEGG: axy:AXYL_02566 ABC transporter family protein 38; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3221632..3222384)	Alicycliphilus denitrificans K601	10484134
YP_004388942.1	CDS	Alide2_3084	NC_015422.1	3222381	3223349	R	PFAM: ABC transporter permease; KEGG: axy:AXYL_02567 inner-membrane translocator 29; ABC transporter permease	complement(3222381..3223349)	Alicycliphilus denitrificans K601	10484135
YP_004388943.1	CDS	Alide2_3085	NC_015422.1	3223346	3224203	R	PFAM: ABC transporter permease; KEGG: axy:AXYL_02568 inner-membrane translocator 30; ABC transporter permease	complement(3223346..3224203)	Alicycliphilus denitrificans K601	10484136
YP_004388944.1	CDS	Alide2_3086	NC_015422.1	3224272	3225468	R	PFAM: Extracellular ligand-binding receptor; KEGG: axy:AXYL_02569 ABC branched chain amino acid family transporter, periplasmic ligand binding protein; extracellular ligand-binding receptor	complement(3224272..3225468)	Alicycliphilus denitrificans K601	10484137
YP_004388945.1	CDS	Alide2_3087	NC_015422.1	3225506	3226315	R	KEGG: rpb:RPB_4328 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(3225506..3226315)	Alicycliphilus denitrificans K601	10484138
YP_004388946.1	CDS	Alide2_3088	NC_015422.1	3226327	3227514	R	KEGG: bxe:Bxe_B2740 lipid-transfer protein; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; Propanoyl-CoA C-acyltransferase	complement(3226327..3227514)	Alicycliphilus denitrificans K601	10484139
YP_004388947.1	CDS	Alide2_3089	NC_015422.1	3227570	3229135	R	KEGG: azl:AZL_a10790 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(3227570..3229135)	Alicycliphilus denitrificans K601	10484140
YP_004388948.1	CDS	Alide2_3090	NC_015422.1	3229354	3230049	D	KEGG: rme:Rmet_3794 putative TetR family transcriptional regulator; TetR family transcriptional regulator	3229354..3230049	Alicycliphilus denitrificans K601	10484141
YP_004388949.1	CDS	Alide2_3091	NC_015422.1	3230240	3230371	R	hypothetical protein	complement(3230240..3230371)	Alicycliphilus denitrificans K601	10484142
YP_004388950.1	CDS	Alide2_3092	NC_015422.1	3230437	3231456	R	KEGG: ajs:Ajs_1799 sulfate ABC transporter, periplasmic sulfate-binding protein; TIGRFAM: Thiosulphate-binding protein; Twin-arginine translocation pathway, signal sequence; PFAM: Bacterial extracellular solute-binding, family 1; sulfate ABC transporter periplasmic sulfate-binding protein	complement(3230437..3231456)	Alicycliphilus denitrificans K601	10484143
YP_004388951.1	CDS	Alide2_3093	NC_015422.1	3231581	3231853	D	PFAM: Fe(II) trafficking protein YggX; KEGG: ctt:CtCNB1_3078 Fe(II) trafficking protein YggX; Fe(II) trafficking protein YggX	3231581..3231853	Alicycliphilus denitrificans K601	10484144
YP_004388952.1	CDS	Alide2_3094	NC_015422.1	3231925	3232590	D	PFAM: Uncharacterised protein family UPF0126; KEGG: dia:Dtpsy_1925 protein of unknown function UPF0126; hypothetical protein	3231925..3232590	Alicycliphilus denitrificans K601	10484145
YP_004388953.1	CDS	Alide2_3095	NC_015422.1	3232587	3234470	D	TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal; HAMAP: tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; KEGG: dac:Daci_4644 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; Domain of unknown function DUF752; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC	3232587..3234470	Alicycliphilus denitrificans K601	10484146
YP_004388954.1	CDS	Alide2_3096	NC_015422.1	3234580	3235383	D	PFAM: Protein of unknown function DUF81; KEGG: aav:Aave_3052 hypothetical protein; hypothetical protein	3234580..3235383	Alicycliphilus denitrificans K601	10484147
YP_004388955.1	CDS	Alide2_3097	NC_015422.1	3235410	3237197	D	PFAM: Nitrite/sulphite reductase 4Fe-4S domain; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; KEGG: dia:Dtpsy_1927 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulfite reductase 4Fe-4S region	3235410..3237197	Alicycliphilus denitrificans K601	10484148
YP_004388956.1	CDS	Alide2_3098	NC_015422.1	3237227	3237622	D	PFAM: Uncharacterised conserved protein UCP030820; KEGG: dia:Dtpsy_1928 hypothetical protein; hypothetical protein	3237227..3237622	Alicycliphilus denitrificans K601	10484149
YP_004388957.1	CDS	Alide2_3099	NC_015422.1	3237619	3238242	D	KEGG: ajs:Ajs_1793 phosphoadenylylsulfate reductase (thioredoxin); PFAM: Phosphoadenosine phosphosulphate reductase; phosphoadenylyl-sulfate reductase (thioredoxin)	3237619..3238242	Alicycliphilus denitrificans K601	10484150
YP_004388958.1	CDS	Alide2_3100	NC_015422.1	3238308	3239264	D	KEGG: aav:Aave_3055 sulfate adenylyltransferase subunit 2; PFAM: Phosphoadenosine phosphosulphate reductase; sulfate adenylyltransferase	3238308..3239264	Alicycliphilus denitrificans K601	10484151
YP_004388959.1	CDS	Alide2_3101	NC_015422.1	3239264	3240631	D	TIGRFAM: Sulphate adenylyltransferase, large subunit; KEGG: dia:Dtpsy_1931 sulfate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; sulfate adenylyltransferase, large subunit	3239264..3240631	Alicycliphilus denitrificans K601	10484152
YP_004388960.1	CDS	Alide2_3102	NC_015422.1	3240759	3241082	D	PFAM: Ferredoxin, C-terminal; 4Fe-4S binding domain; KEGG: dia:Dtpsy_1932 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin, C-terminal protein	3240759..3241082	Alicycliphilus denitrificans K601	10484153
YP_004388961.1	CDS	Alide2_3103	NC_015422.1	3241097	3242143	D	KEGG: dia:Dtpsy_1933 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; ferredoxin--NADP(+) reductase	3241097..3242143	Alicycliphilus denitrificans K601	10484154
YP_004388962.1	CDS	Alide2_3104	NC_015422.1	3242140	3243411	D	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: ctt:CtCNB1_2972 cytosine/purines/uracil permease; permease for cytosine/purines uracil thiamine allantoin	3242140..3243411	Alicycliphilus denitrificans K601	10484155
YP_004388963.1	CDS	Alide2_3105	NC_015422.1	3243498	3243974	D	KEGG: dia:Dtpsy_1934 SH3 type 3 domain protein; PFAM: SH3, type 3; Protein of unknown function DUF1058; SMART: SH3-like domain, bacterial; SH3 type 3 domain-containing protein	3243498..3243974	Alicycliphilus denitrificans K601	10484156
YP_004388964.1	CDS	Alide2_3106	NC_015422.1	3243985	3244833	R	TIGRFAM: Phosphomethylpyrimidine kinase type-2; KEGG: ajs:Ajs_1787 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase	complement(3243985..3244833)	Alicycliphilus denitrificans K601	10484157
YP_004388965.1	CDS	Alide2_3107	NC_015422.1	3245028	3246146	D	KEGG: dia:Dtpsy_1936 FAD dependent oxidoreductase; TIGRFAM: Glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase ThiO	3245028..3246146	Alicycliphilus denitrificans K601	10484158
YP_004388966.1	CDS	Alide2_3108	NC_015422.1	3246143	3246340	D	KEGG: dia:Dtpsy_1937 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS; thiamine biosynthesis protein ThiS	3246143..3246340	Alicycliphilus denitrificans K601	10484159
YP_004388967.1	CDS	Alide2_3109	NC_015422.1	3246356	3247159	D	KEGG: dia:Dtpsy_1938 thiazole synthase; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis; thiazole synthase	3246356..3247159	Alicycliphilus denitrificans K601	10484160
YP_004388968.1	CDS	Alide2_3110	NC_015422.1	3247160	3248062	D	KEGG: dia:Dtpsy_1939 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; thiamine-phosphate diphosphorylase	3247160..3248062	Alicycliphilus denitrificans K601	10484161
YP_004388969.1	CDS	Alide2_3111	NC_015422.1	3248073	3250091	R	KEGG: dia:Dtpsy_1940 hypothetical protein; hypothetical protein	complement(3248073..3250091)	Alicycliphilus denitrificans K601	10484162
YP_004388970.1	CDS	Alide2_3112	NC_015422.1	3250169	3251689	D	KEGG: dia:Dtpsy_1941 3-hydroxy-acyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA dehydrogenase	3250169..3251689	Alicycliphilus denitrificans K601	10484163
YP_004388971.1	CDS	Alide2_3113	NC_015422.1	3251700	3252479	D	PFAM: Crotonase, core; KEGG: dia:Dtpsy_1942 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	3251700..3252479	Alicycliphilus denitrificans K601	10484164
YP_004388972.1	CDS	Alide2_3114	NC_015422.1	3252669	3253388	D	KEGG: ajs:Ajs_1779 Crp/FNR family transcriptional regulator; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator	3252669..3253388	Alicycliphilus denitrificans K601	10484165
YP_004388973.1	CDS	Alide2_3115	NC_015422.1	3253444	3254535	D	PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_1778 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	3253444..3254535	Alicycliphilus denitrificans K601	10484166
YP_004388974.1	CDS	Alide2_3116	NC_015422.1	3254551	3255792	D	KEGG: dia:Dtpsy_1945 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	3254551..3255792	Alicycliphilus denitrificans K601	10484167
YP_004388975.1	CDS	Alide2_3117	NC_015422.1	3255938	3259933	D	KEGG: dac:Daci_5941 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; TIGRFAM: Delta-1-pyrroline-5-carboxylate dehydrogenase 3; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase domain; delta-1-pyrroline-5-carboxylate dehydrogenase	3255938..3259933	Alicycliphilus denitrificans K601	10484168
YP_004388976.1	CDS	Alide2_3118	NC_015422.1	3260136	3261638	D	KEGG: dac:Daci_5942 sodium/proline symporter; TIGRFAM: Sodium/solute symporter, subgroup; Sodium/proline symporter; PFAM: Sodium/solute symporter; SSS sodium solute transporter superfamily	3260136..3261638	Alicycliphilus denitrificans K601	10484169
YP_004388977.1	CDS	Alide2_3119	NC_015422.1	3261722	3262534	D	KEGG: dia:Dtpsy_1946 transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	3261722..3262534	Alicycliphilus denitrificans K601	10484170
YP_004388978.1	CDS	Alide2_3120	NC_015422.1	3262572	3263666	R	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal; KEGG: ajs:Ajs_1775 murein-dd-endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1	complement(3262572..3263666)	Alicycliphilus denitrificans K601	10484171
YP_004388979.1	CDS	Alide2_3121	NC_015422.1	3263782	3265323	R	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type; KEGG: ajs:Ajs_1774 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase	complement(3263782..3265323)	Alicycliphilus denitrificans K601	10484172
YP_004388980.1	CDS	Alide2_3122	NC_015422.1	3265359	3267026	R	SMART: 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; TIGRFAM: Yeast 2-isopropylmalate synthase; KEGG: dia:Dtpsy_1949 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase	complement(3265359..3267026)	Alicycliphilus denitrificans K601	10484173
YP_004388981.1	CDS	Alide2_3123	NC_015422.1	3267234	3268142	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_3346 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(3267234..3268142)	Alicycliphilus denitrificans K601	10484174
YP_004388982.1	CDS	Alide2_3124	NC_015422.1	3268275	3268829	D	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein; Glyoxalase/bleomycin resistance protein/dioxygenase	3268275..3268829	Alicycliphilus denitrificans K601	10484175
YP_004388983.1	CDS	Alide2_3125	NC_015422.1	3268858	3270231	D	PFAM: Major facilitator superfamily MFS-1; KEGG: hse:Hsero_1116 4-hydroxybenzoate transporter transmembrane protein; major facilitator superfamily protein	3268858..3270231	Alicycliphilus denitrificans K601	10484176
YP_004388984.1	CDS	Alide2_3126	NC_015422.1	3270307	3271320	D	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: tmz:Tmz1t_0853 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase	3270307..3271320	Alicycliphilus denitrificans K601	10484177
YP_004388985.1	CDS	Alide2_3127	NC_015422.1	3271331	3271999	D	TIGRFAM: Maleylacetoacetate isomerase; KEGG: xtr:100496290 probable maleylacetoacetate isomerase-like; PFAM: Glutathione S-transferase, N-terminal; maleylacetoacetate isomerase	3271331..3271999	Alicycliphilus denitrificans K601	10484178
YP_004388986.1	CDS	Alide2_3128	NC_015422.1	3272024	3272860	R	KEGG: xtr:100496448 CDP-diacylglycerol--serine O-phosphatidyltransferase-like; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase	complement(3272024..3272860)	Alicycliphilus denitrificans K601	10484179
YP_004388987.1	CDS	Alide2_3129	NC_015422.1	3273038	3274054	R	TIGRFAM: Acetohydroxy acid isomeroreductase; KEGG: dia:Dtpsy_1951 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; ketol-acid reductoisomerase	complement(3273038..3274054)	Alicycliphilus denitrificans K601	10484180
YP_004388988.1	CDS	Alide2_3130	NC_015422.1	3274123	3274614	R	KEGG: ctt:CtCNB1_1659 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; acetolactate synthase, small subunit	complement(3274123..3274614)	Alicycliphilus denitrificans K601	10484181
YP_004388989.1	CDS	Alide2_3131	NC_015422.1	3274802	3276595	R	TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; KEGG: ajs:Ajs_1769 acetolactate synthase 3 catalytic subunit; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; Thiamine pyrophosphate enzyme, central domain; acetolactate synthase, large subunit	complement(3274802..3276595)	Alicycliphilus denitrificans K601	10484182
YP_004388990.1	CDS	Alide2_3132	NC_015422.1	3276884	3277453	D	KEGG: dia:Dtpsy_1954 RNA polymerase factor sigma-70; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit	3276884..3277453	Alicycliphilus denitrificans K601	10484183
YP_004388991.1	CDS	Alide2_3133	NC_015422.1	3277450	3277911	D	PFAM: Protein of unknown function DUF3619; KEGG: dia:Dtpsy_1955 putative transmembrane protein; hypothetical protein	3277450..3277911	Alicycliphilus denitrificans K601	10484184
YP_004388992.1	CDS	Alide2_3134	NC_015422.1	3277935	3278759	D	PFAM: Protein of unknown function DUF3106; KEGG: ajs:Ajs_1766 putative transmembrane protein; hypothetical protein	3277935..3278759	Alicycliphilus denitrificans K601	10484185
YP_004388993.1	CDS	Alide2_3135	NC_015422.1	3278787	3279359	D	PFAM: RDD; KEGG: ajs:Ajs_1765 RDD domain-containing protein; RDD domain-containing protein	3278787..3279359	Alicycliphilus denitrificans K601	10484186
YP_004388994.1	CDS	Alide2_3136	NC_015422.1	3279422	3279820	D	PFAM: Diacylglycerol kinase, prokaryotic; KEGG: dia:Dtpsy_1958 diacylglycerol kinase; diacylglycerol kinase	3279422..3279820	Alicycliphilus denitrificans K601	10484187
YP_004388995.1	CDS	Alide2_3137	NC_015422.1	3279813	3280406	D	KEGG: dia:Dtpsy_1959 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein	3279813..3280406	Alicycliphilus denitrificans K601	10484188
YP_004388996.1	CDS	Alide2_3138	NC_015422.1	3280416	3280754	R	KEGG: dia:Dtpsy_1960 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II	complement(3280416..3280754)	Alicycliphilus denitrificans K601	10484189
YP_004388997.1	CDS	Alide2_3139	NC_015422.1	3280805	3282463	R	TIGRFAM: NAD synthase; KEGG: vei:Veis_1737 NAD+ synthetase; PFAM: NAD/GMP synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase	complement(3280805..3282463)	Alicycliphilus denitrificans K601	10484190
YP_004388998.1	CDS	Alide2_3141	NC_015422.1	3282758	3283981	D	PFAM: Protein of unknown function DUF482; KEGG: vei:Veis_1736 hypothetical protein; hypothetical protein	3282758..3283981	Alicycliphilus denitrificans K601	10484192
YP_004388999.1	CDS	Alide2_3142	NC_015422.1	3283978	3285735	R	KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	complement(3283978..3285735)	Alicycliphilus denitrificans K601	10484193
YP_004389000.1	CDS	Alide2_3143	NC_015422.1	3285748	3286254	R	KEGG: ajs:Ajs_1759 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein	complement(3285748..3286254)	Alicycliphilus denitrificans K601	10484194
YP_004389001.1	CDS	Alide2_3144	NC_015422.1	3286456	3286989	R	KEGG: dia:Dtpsy_1964 inorganic diphosphatase; PFAM: Inorganic pyrophosphatase; Inorganic diphosphatase	complement(3286456..3286989)	Alicycliphilus denitrificans K601	10484195
YP_004389002.1	CDS	Alide2_3145	NC_015422.1	3287204	3289285	D	PFAM: Pyrophosphate-energised proton pump; TIGRFAM: Pyrophosphate-energised proton pump; HAMAP: Pyrophosphate-energised proton pump; KEGG: dia:Dtpsy_1965 membrane-bound proton-translocating pyrophosphatase; Pyrophosphate-energized proton pump	3287204..3289285	Alicycliphilus denitrificans K601	10484196
YP_004389003.1	CDS	Alide2_3146	NC_015422.1	3289450	3290883	D	PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_1966 aldehyde dehydrogenase; aldehyde dehydrogenase	3289450..3290883	Alicycliphilus denitrificans K601	10484197
YP_004389004.1	CDS	Alide2_3147	NC_015422.1	3290893	3291450	D	KEGG: ajs:Ajs_1755 hypothetical protein; hypothetical protein	3290893..3291450	Alicycliphilus denitrificans K601	10484198
YP_004389005.1	CDS	Alide2_3148	NC_015422.1	3291499	3292341	R	KEGG: dia:Dtpsy_1968 hypothetical protein; hypothetical protein	complement(3291499..3292341)	Alicycliphilus denitrificans K601	10484199
YP_004389006.1	CDS	Alide2_3149	NC_015422.1	3292469	3293638	D	TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: dia:Dtpsy_1969 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A	3292469..3293638	Alicycliphilus denitrificans K601	10484200
YP_004389007.1	CDS	Alide2_3150	NC_015422.1	3293642	3294274	D	TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: dia:Dtpsy_1970 molybdopterin-guanine dinucleotide biosynthesis protein MobA; molybdopterin-guanine dinucleotide biosynthesis protein A	3293642..3294274	Alicycliphilus denitrificans K601	10484201
YP_004389008.1	CDS	Alide2_3151	NC_015422.1	3294271	3294846	D	PFAM: GCN5-related N-acetyltransferase (GNAT) domain; KEGG: aav:Aave_2657 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	3294271..3294846	Alicycliphilus denitrificans K601	10484202
YP_004389009.1	CDS	Alide2_3152	NC_015422.1	3294833	3296191	D	TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; MoeA, N-terminal and linker domain; MoeA, C-terminal, domain IV; KEGG: dia:Dtpsy_1971 molybdenum cofactor synthesis domain protein; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein	3294833..3296191	Alicycliphilus denitrificans K601	10484203
YP_004389010.1	CDS	Alide2_3153	NC_015422.1	3296193	3296519	D	PFAM: Thioredoxin domain; KEGG: dia:Dtpsy_1972 thioredoxin domain protein; thioredoxin domain-containing protein	3296193..3296519	Alicycliphilus denitrificans K601	10484204
YP_004389011.1	CDS	Alide2_3154	NC_015422.1	3296516	3296902	D	KEGG: dac:Daci_4475 hypothetical protein; hypothetical protein	3296516..3296902	Alicycliphilus denitrificans K601	10484205
YP_004389012.1	CDS	Alide2_3155	NC_015422.1	3296889	3297875	R	KEGG: bbr:BB4338 hypothetical protein; hypothetical protein	complement(3296889..3297875)	Alicycliphilus denitrificans K601	10484206
YP_004389013.1	CDS	Alide2_3156	NC_015422.1	3297955	3298632	R	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: rsl:RPSI07_mp1263 dimethylmenaquinone methyltransferase; protein; Dimethylmenaquinone methyltransferase	complement(3297955..3298632)	Alicycliphilus denitrificans K601	10484207
YP_004389014.1	CDS	Alide2_3157	NC_015422.1	3298668	3299570	R	KEGG: aav:Aave_4073 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	complement(3298668..3299570)	Alicycliphilus denitrificans K601	10484208
YP_004389015.1	CDS	Alide2_3158	NC_015422.1	3299724	3300650	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rso:RS03179 transcription regulator protein; LysR family transcriptional regulator	complement(3299724..3300650)	Alicycliphilus denitrificans K601	10484209
YP_004389016.1	CDS	Alide2_3159	NC_015422.1	3300789	3301463	D	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2990 dimethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase	3300789..3301463	Alicycliphilus denitrificans K601	10484210
YP_004389017.1	CDS	Alide2_3160	NC_015422.1	3301469	3302101	D	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: app:CAP2UW1_2989 dimethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase	3301469..3302101	Alicycliphilus denitrificans K601	10484211
YP_004389018.1	CDS	Alide2_3161	NC_015422.1	3302098	3303315	D	KEGG: rso:RSp1232 aspartate aminotransferase A protein; PFAM: Aminotransferase, class I/classII; aspartate transaminase	3302098..3303315	Alicycliphilus denitrificans K601	10484212
YP_004389019.1	CDS	Alide2_3162	NC_015422.1	3303418	3303864	R	KEGG: dia:Dtpsy_1973 ribonuclease H; HAMAP: Ribonuclease H; PFAM: Ribonuclease H domain; ribonuclease H	complement(3303418..3303864)	Alicycliphilus denitrificans K601	10484213
YP_004389020.1	CDS	Alide2_3163	NC_015422.1	3303910	3304692	R	PFAM: Methyltransferase type 11; KEGG: ajs:Ajs_1744 methyltransferase type 11; type 11 methyltransferase	complement(3303910..3304692)	Alicycliphilus denitrificans K601	10484214
YP_004389021.1	CDS	Alide2_3164	NC_015422.1	3304697	3305467	D	SMART: Beta-lactamase-like; TIGRFAM: Hydroxyacylglutathione hydrolase; KEGG: dia:Dtpsy_1975 hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; PFAM: Beta-lactamase-like; hydroxyacylglutathione hydrolase	3304697..3305467	Alicycliphilus denitrificans K601	10484215
YP_004389022.1	CDS	Alide2_3165	NC_015422.1	3305464	3306978	D	PFAM: Lytic transglycosylase-like, catalytic; MLTD-N; Peptidoglycan-binding lysin domain; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	3305464..3306978	Alicycliphilus denitrificans K601	10484216
YP_004389023.1	CDS	Alide2_3166	NC_015422.1	3306996	3307148	R	PFAM: Protein of unknown function DUF3096; KEGG: dia:Dtpsy_1977 hypothetical protein; hypothetical protein	complement(3306996..3307148)	Alicycliphilus denitrificans K601	10484217
YP_004389024.1	CDS	Alide2_3167	NC_015422.1	3307247	3308296	R	KEGG: aav:Aave_2648 putative signal peptide protein; hypothetical protein	complement(3307247..3308296)	Alicycliphilus denitrificans K601	10484218
YP_004389025.1	CDS	Alide2_3168	NC_015422.1	3308714	3310030	D	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_3340 phage integrase family protein; integrase family protein	3308714..3310030	Alicycliphilus denitrificans K601	10484219
YP_004389026.1	CDS	Alide2_3169	NC_015422.1	3310130	3310711	D	KEGG: eba:ebA218 hypothetical protein; hypothetical protein	3310130..3310711	Alicycliphilus denitrificans K601	10484220
YP_004389027.1	CDS	Alide2_3170	NC_015422.1	3310864	3311067	D	KEGG: vap:Vapar_3801 hypothetical protein; hypothetical protein	3310864..3311067	Alicycliphilus denitrificans K601	10484221
YP_004389028.1	CDS	Alide2_3171	NC_015422.1	3311068	3311418	D	KEGG: hsm:HSM_1673 hypothetical protein; hypothetical protein	3311068..3311418	Alicycliphilus denitrificans K601	10484222
YP_004389029.1	CDS	Alide2_3172	NC_015422.1	3311420	3312136	D	KEGG: ajs:Ajs_1730 hypothetical protein; hypothetical protein	3311420..3312136	Alicycliphilus denitrificans K601	10484223
YP_004389030.1	CDS	Alide2_3173	NC_015422.1	3312251	3313054	D	KEGG: vap:Vapar_3798 hypothetical protein; hypothetical protein	3312251..3313054	Alicycliphilus denitrificans K601	10484224
YP_004389031.1	CDS	Alide2_3174	NC_015422.1	3313136	3313405	D	KEGG: vap:Vapar_3797 hypothetical protein; hypothetical protein	3313136..3313405	Alicycliphilus denitrificans K601	10484225
YP_004389032.1	CDS	Alide2_3175	NC_015422.1	3313390	3313608	D	hypothetical protein	3313390..3313608	Alicycliphilus denitrificans K601	10484226
YP_004389033.1	CDS	Alide2_3176	NC_015422.1	3313605	3313823	D	hypothetical protein	3313605..3313823	Alicycliphilus denitrificans K601	10484227
YP_004389034.1	CDS	Alide2_3177	NC_015422.1	3313807	3314055	D	hypothetical protein	3313807..3314055	Alicycliphilus denitrificans K601	10484228
YP_004389035.1	CDS	Alide2_3178	NC_015422.1	3314045	3314311	D	KEGG: ctt:CtCNB1_2998 hypothetical protein; hypothetical protein	3314045..3314311	Alicycliphilus denitrificans K601	10484229
YP_004389036.1	CDS	Alide2_3179	NC_015422.1	3314868	3315632	R	PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: aav:Aave_3403 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein	complement(3314868..3315632)	Alicycliphilus denitrificans K601	10484231
YP_004389037.1	CDS	Alide2_3180	NC_015422.1	3315641	3316429	R	TIGRFAM: Tol-Pal system, YbgF; KEGG: ajs:Ajs_1725 TPR repeat-containing protein; tol-pal system protein YbgF	complement(3315641..3316429)	Alicycliphilus denitrificans K601	10484232
YP_004389038.1	CDS	Alide2_3181	NC_015422.1	3316429	3316971	R	KEGG: dia:Dtpsy_1980 peptidoglycan-associated lipoprotein; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; peptidoglycan-associated lipoprotein	complement(3316429..3316971)	Alicycliphilus denitrificans K601	10484233
YP_004389039.1	CDS	Alide2_3182	NC_015422.1	3317015	3318337	R	KEGG: dia:Dtpsy_1981 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller; Tol-Pal system beta propeller repeat-containing protein TolB	complement(3317015..3318337)	Alicycliphilus denitrificans K601	10484234
YP_004389040.1	CDS	Alide2_3183	NC_015422.1	3318471	3320252	D	SMART: ATPase, AAA+ type, core; TIGRFAM: ABC transporter, lipid A export, MsbA; KEGG: dia:Dtpsy_1982 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane domain; ABC transporter-like; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA	3318471..3320252	Alicycliphilus denitrificans K601	10484235
YP_004389041.1	CDS	Alide2_3184	NC_015422.1	3320315	3322057	R	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin/lipoyl attachment; KEGG: dac:Daci_5726 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; biotin carboxylase	complement(3320315..3322057)	Alicycliphilus denitrificans K601	10484236
YP_004389042.1	CDS	Alide2_3185	NC_015422.1	3322051	3323652	R	SMART: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; TIGRFAM: Allophanate hydrolase subunit 2; Conserved hypothetical protein CHP00370; KEGG: reu:Reut_A2450 allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; urea amidolyase-like protein	complement(3322051..3323652)	Alicycliphilus denitrificans K601	10484237
YP_004389043.1	CDS	Alide2_3186	NC_015422.1	3323660	3324472	R	PFAM: Protein of unknown function DUF1445; KEGG: reh:H16_B1759 hypothetical protein; hypothetical protein	complement(3323660..3324472)	Alicycliphilus denitrificans K601	10484238
YP_004389044.1	CDS	Alide2_3187	NC_015422.1	3324495	3325256	R	PFAM: Uncharacterised protein family UPF0271, LamB/YcsF; KEGG: aav:Aave_3513 LamB/YcsF family protein; LamB/YcsF family protein	complement(3324495..3325256)	Alicycliphilus denitrificans K601	10484239
YP_004389045.1	CDS	Alide2_3188	NC_015422.1	3325284	3326531	R	PFAM: General substrate transporter; KEGG: reh:H16_B1760 major facilitator superfamily transporter AAHS family protein; general substrate transporter	complement(3325284..3326531)	Alicycliphilus denitrificans K601	10484240
YP_004389046.1	CDS	Alide2_3189	NC_015422.1	3326795	3327472	D	KEGG: aav:Aave_3515 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	3326795..3327472	Alicycliphilus denitrificans K601	10484241
YP_004389047.1	CDS	Alide2_3190	NC_015422.1	3327476	3328693	R	KEGG: app:CAP2UW1_0424 hypothetical protein; hypothetical protein	complement(3327476..3328693)	Alicycliphilus denitrificans K601	10484242
YP_004389048.1	CDS	Alide2_3191	NC_015422.1	3328725	3328970	R	hypothetical protein	complement(3328725..3328970)	Alicycliphilus denitrificans K601	10484243
YP_004389049.1	CDS	Alide2_3192	NC_015422.1	3329165	3329845	R	PFAM: Ankyrin repeat; KEGG: dia:Dtpsy_1983 ankyrin; Ankyrin	complement(3329165..3329845)	Alicycliphilus denitrificans K601	10484244
YP_004389050.1	CDS	Alide2_3193	NC_015422.1	3329842	3330651	R	KEGG: ajs:Ajs_1720 TatD family hydrolase; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; hydrolase, TatD family	complement(3329842..3330651)	Alicycliphilus denitrificans K601	10484245
YP_004389051.1	CDS	Alide2_3194	NC_015422.1	3330713	3331072	R	PFAM: Type IV pilus assembly PilZ; KEGG: dia:Dtpsy_1985 type IV pilus assembly PilZ; type IV pilus assembly PilZ	complement(3330713..3331072)	Alicycliphilus denitrificans K601	10484246
YP_004389052.1	CDS	Alide2_3195	NC_015422.1	3331089	3332084	R	KEGG: ajs:Ajs_1718 DNA-directed DNA polymerase; DNA-directed DNA polymerase	complement(3331089..3332084)	Alicycliphilus denitrificans K601	10484247
YP_004389053.1	CDS	Alide2_3196	NC_015422.1	3332081	3332737	R	PFAM: Thymidylate kinase; TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: dia:Dtpsy_1987 thymidylate kinase; Thymidylate kinase	complement(3332081..3332737)	Alicycliphilus denitrificans K601	10484248
YP_004389054.1	CDS	Alide2_3197	NC_015422.1	3332734	3333729	R	KEGG: ajs:Ajs_1716 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family UPF0755; PFAM: Uncharacterised protein family UPF0755; aminodeoxychorismate lyase	complement(3332734..3333729)	Alicycliphilus denitrificans K601	10484249
YP_004389055.1	CDS	Alide2_3198	NC_015422.1	3333776	3334717	D	KEGG: ajs:Ajs_1715 glycine cleavage T protein (aminomethyl transferase); TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; folate-binding protein YgfZ	3333776..3334717	Alicycliphilus denitrificans K601	10484250
YP_004389056.1	CDS	Alide2_3199	NC_015422.1	3334751	3335242	D	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: dia:Dtpsy_2009 CMP/dCMP deaminase zinc-binding; CMP/dCMP deaminase zinc-binding protein	3334751..3335242	Alicycliphilus denitrificans K601	10484251
YP_004389057.1	CDS	Alide2_3200	NC_015422.1	3335235	3336428	D	PFAM: Major facilitator superfamily MFS-1; KEGG: dac:Daci_2202 major facilitator transporter; major facilitator superfamily protein	3335235..3336428	Alicycliphilus denitrificans K601	10484252
YP_004389058.1	CDS	Alide2_3201	NC_015422.1	3336451	3337932	D	KEGG: dac:Daci_1205 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	3336451..3337932	Alicycliphilus denitrificans K601	10484253
YP_004389059.1	CDS	Alide2_3202	NC_015422.1	3337929	3338573	D	KEGG: dac:Daci_1204 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	3337929..3338573	Alicycliphilus denitrificans K601	10484254
YP_004389060.1	CDS	Alide2_3203	NC_015422.1	3338598	3339179	D	PFAM: Domain of unknown function DUF336; KEGG: dac:Daci_1203 hypothetical protein; hypothetical protein	3338598..3339179	Alicycliphilus denitrificans K601	10484255
YP_004389061.1	CDS	Alide2_3204	NC_015422.1	3339183	3340043	R	KEGG: dia:Dtpsy_1990 thioesterase superfamily protein; TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; GCN5-related N-acetyltransferase (GNAT) domain; 4-hydroxybenzoyl-CoA thioesterase	complement(3339183..3340043)	Alicycliphilus denitrificans K601	10484256
YP_004389062.1	CDS	Alide2_3205	NC_015422.1	3340053	3341036	R	KEGG: ajs:Ajs_1713 alpha/beta hydrolase domain-containing protein; alpha/beta hydrolase domain-containing protein	complement(3340053..3341036)	Alicycliphilus denitrificans K601	10484257
YP_004389063.1	CDS	Alide2_3206	NC_015422.1	3341049	3341924	R	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: ajs:Ajs_1712 hydratase/decarboxylase; fumarylacetoacetate (FAA) hydrolase	complement(3341049..3341924)	Alicycliphilus denitrificans K601	10484258
YP_004389064.1	CDS	Alide2_3207	NC_015422.1	3342020	3342853	R	PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_1708 putative signal transduction protein; putative signal transduction protein	complement(3342020..3342853)	Alicycliphilus denitrificans K601	10484259
YP_004389065.1	CDS	Alide2_3208	NC_015422.1	3342909	3343619	R	KEGG: cti:pRALTA_0434 putative transcriptional regulator, IclR family; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(3342909..3343619)	Alicycliphilus denitrificans K601	10484260
YP_004389066.1	CDS	Alide2_3209	NC_015422.1	3343768	3344778	D	PFAM: Amidohydrolase 2; KEGG: bam:Bamb_4804 amidohydrolase 2; amidohydrolase 2	3343768..3344778	Alicycliphilus denitrificans K601	10484261
YP_004389067.1	CDS	Alide2_3210	NC_015422.1	3344829	3345788	D	KEGG: rme:Rmet_4146 extra-cytoplasmic solute receptor; extra-cytoplasmic solute receptor	3344829..3345788	Alicycliphilus denitrificans K601	10484262
YP_004389068.1	CDS	Alide2_3211	NC_015422.1	3345821	3346786	D	KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein	3345821..3346786	Alicycliphilus denitrificans K601	10484263
YP_004389069.1	CDS	Alide2_3212	NC_015422.1	3346789	3347991	D	KEGG: reu:Reut_B4958 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	3346789..3347991	Alicycliphilus denitrificans K601	10484264
YP_004389070.1	CDS	Alide2_3213	NC_015422.1	3347988	3348839	D	PFAM: Citrate synthase-like; KEGG: rme:Rmet_4144 citrate synthase; Citrate synthase	3347988..3348839	Alicycliphilus denitrificans K601	10484265
YP_004389071.1	CDS	Alide2_3214	NC_015422.1	3348930	3349937	R	KEGG: bbr:BB0548 LacI family regulatory protein; PFAM: HTH transcriptional regulator, LacI; Periplasmic binding protein/LacI transcriptional regulator; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator	complement(3348930..3349937)	Alicycliphilus denitrificans K601	10484266
YP_004389072.1	CDS	Alide2_3215	NC_015422.1	3350028	3351020	D	KEGG: bbr:BB0564 hypothetical protein; hypothetical protein	3350028..3351020	Alicycliphilus denitrificans K601	10484267
YP_004389073.1	CDS	Alide2_3216	NC_015422.1	3351026	3352582	D	KEGG: bbr:BB0547 putative ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	3351026..3352582	Alicycliphilus denitrificans K601	10484268
YP_004389074.1	CDS	Alide2_3217	NC_015422.1	3352609	3353409	D	KEGG: rpd:RPD_4223 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	3352609..3353409	Alicycliphilus denitrificans K601	10484269
YP_004389075.1	CDS	Alide2_3218	NC_015422.1	3353447	3354430	D	KEGG: reu:Reut_A0842 hypothetical protein; hypothetical protein	3353447..3354430	Alicycliphilus denitrificans K601	10484270
YP_004389076.1	CDS	Alide2_3219	NC_015422.1	3354427	3355608	D	KEGG: bbr:BB0546 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase	3354427..3355608	Alicycliphilus denitrificans K601	10484271
YP_004389077.1	CDS	Alide2_3220	NC_015422.1	3355605	3356003	D	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: bbr:BB0545 hypothetical protein; hypothetical protein	3355605..3356003	Alicycliphilus denitrificans K601	10484272
YP_004389078.1	CDS	Alide2_3221	NC_015422.1	3356026	3357000	D	KEGG: bbr:BB0544 hypothetical protein; hypothetical protein	3356026..3357000	Alicycliphilus denitrificans K601	10484273
YP_004389079.1	CDS	Alide2_3222	NC_015422.1	3357016	3359400	R	KEGG: ajs:Ajs_1707 RNA-binding S1 domain-containing protein; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1; Tex-like protein	complement(3357016..3359400)	Alicycliphilus denitrificans K601	10484274
YP_004389080.1	CDS	Alide2_3223	NC_015422.1	3359493	3359897	D	KEGG: dia:Dtpsy_1998 hypothetical protein; hypothetical protein	3359493..3359897	Alicycliphilus denitrificans K601	10484275
YP_004389081.1	CDS	Alide2_3224	NC_015422.1	3359898	3360944	D	PFAM: Protein of unknown function DUF72; KEGG: dia:Dtpsy_1999 protein of unknown function DUF72; hypothetical protein	3359898..3360944	Alicycliphilus denitrificans K601	10484276
YP_004389082.1	CDS	Alide2_3225	NC_015422.1	3360993	3361514	R	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_1878 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	complement(3360993..3361514)	Alicycliphilus denitrificans K601	10484277
YP_004389083.1	CDS	Alide2_3226	NC_015422.1	3361577	3362170	D	PFAM: ChaC-like protein; KEGG: dia:Dtpsy_1879 ChaC family protein; ChaC family protein	3361577..3362170	Alicycliphilus denitrificans K601	10484278
YP_004389084.1	CDS	Alide2_3227	NC_015422.1	3362187	3362840	D	TIGRFAM: Pyridoxamine 5'-phosphate oxidase; KEGG: dia:Dtpsy_1881 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; pyridoxamine 5'-phosphate oxidase	3362187..3362840	Alicycliphilus denitrificans K601	10484279
YP_004389085.1	CDS	Alide2_3228	NC_015422.1	3362841	3363779	R	PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_1882 auxin efflux carrier; auxin efflux carrier	complement(3362841..3363779)	Alicycliphilus denitrificans K601	10484280
YP_004389086.1	CDS	Alide2_3229	NC_015422.1	3363911	3365131	R	KEGG: ajs:Ajs_2035 chromate transporter; TIGRFAM: Chromate transporter, long chain; PFAM: Chromate transporter; chromate transporter	complement(3363911..3365131)	Alicycliphilus denitrificans K601	10484281
YP_004389087.1	CDS	Alide2_3230	NC_015422.1	3365183	3366055	R	KEGG: ajs:Ajs_2034 hypothetical protein; hypothetical protein	complement(3365183..3366055)	Alicycliphilus denitrificans K601	10484282
YP_004389088.1	CDS	Alide2_3231	NC_015422.1	3366558	3368609	R	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_1842 TonB-dependent receptor; TonB-dependent receptor	complement(3366558..3368609)	Alicycliphilus denitrificans K601	10484283
YP_004389089.1	CDS	Alide2_3232	NC_015422.1	3369190	3369738	R	TIGRFAM: Peptide methionine sulphoxide reductase MsrA; KEGG: ajs:Ajs_2030 peptide methionine sulfoxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase	complement(3369190..3369738)	Alicycliphilus denitrificans K601	10484284
YP_004389090.1	CDS	Alide2_3233	NC_015422.1	3369887	3370549	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: ajs:Ajs_2029 TetR family transcriptional regulator; TetR family transcriptional regulator	3369887..3370549	Alicycliphilus denitrificans K601	10484285
YP_004389091.1	CDS	Alide2_3234	NC_015422.1	3370600	3371310	D	KEGG: dia:Dtpsy_1837 protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase	3370600..3371310	Alicycliphilus denitrificans K601	10484286
YP_004389092.1	CDS	Alide2_3235	NC_015422.1	3371329	3371667	D	KEGG: dia:Dtpsy_1836 rhodanese domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; Rhodanese-like protein	3371329..3371667	Alicycliphilus denitrificans K601	10484287
YP_004389093.1	CDS	Alide2_3236	NC_015422.1	3371684	3373030	D	KEGG: dia:Dtpsy_1835 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; type I secretion outer membrane protein, TolC family	3371684..3373030	Alicycliphilus denitrificans K601	10484288
YP_004389094.1	CDS	Alide2_3237	NC_015422.1	3374692	3375762	R	PFAM: Plasmid recombination enzyme; KEGG: bvi:Bcep1808_2267 plasmid recombination enzyme; plasmid recombination protein	complement(3374692..3375762)	Alicycliphilus denitrificans K601	10484289
YP_004389095.1	CDS	Alide2_3238	NC_015422.1	3376628	3377914	R	KEGG: mmb:Mmol_0218 hypothetical protein; hypothetical protein	complement(3376628..3377914)	Alicycliphilus denitrificans K601	10484290
YP_004389096.1	CDS	Alide2_3239	NC_015422.1	3378404	3379261	R	KEGG: axy:AXYL_03456 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter; hypothetical protein	complement(3378404..3379261)	Alicycliphilus denitrificans K601	10484292
YP_004389097.1	CDS	Alide2_3240	NC_015422.1	3379502	3380005	R	PFAM: Flavodoxin/nitric oxide synthase; KEGG: dia:Dtpsy_2016 NAD(P)H dehydrogenase (quinone); flavodoxin/nitric oxide synthase	complement(3379502..3380005)	Alicycliphilus denitrificans K601	10484293
YP_004389098.1	CDS	Alide2_3241	NC_015422.1	3380038	3381939	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2017 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	complement(3380038..3381939)	Alicycliphilus denitrificans K601	10484294
YP_004389099.1	CDS	Alide2_3242	NC_015422.1	3382371	3383171	R	KEGG: ctt:CtCNB1_1867 amino acid ABC transporter, permease protein PEB1; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	complement(3382371..3383171)	Alicycliphilus denitrificans K601	10484295
YP_004389100.1	CDS	Alide2_3243	NC_015422.1	3383168	3383830	R	KEGG: dac:Daci_4388 polar amino acid ABC transporter inner membrane protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	complement(3383168..3383830)	Alicycliphilus denitrificans K601	10484296
YP_004389101.1	CDS	Alide2_3244	NC_015422.1	3383834	3384736	R	KEGG: ctt:CtCNB1_1865 glutamate-binding protein precursor; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	complement(3383834..3384736)	Alicycliphilus denitrificans K601	10484297
YP_004389102.1	CDS	Alide2_3245	NC_015422.1	3384964	3386133	R	TIGRFAM: Thiolase; KEGG: dia:Dtpsy_2019 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	complement(3384964..3386133)	Alicycliphilus denitrificans K601	10484298
YP_004389103.1	CDS	Alide2_3246	NC_015422.1	3386168	3388267	R	KEGG: ajs:Ajs_1684 short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; Crotonase, core; 3-hydroxybutyryl-CoA epimerase	complement(3386168..3388267)	Alicycliphilus denitrificans K601	10484299
YP_004389104.1	CDS	Alide2_3247	NC_015422.1	3388462	3389157	R	KEGG: dia:Dtpsy_2021 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(3388462..3389157)	Alicycliphilus denitrificans K601	10484300
YP_004389105.1	CDS	Alide2_3248	NC_015422.1	3389157	3389945	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2022 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3389157..3389945)	Alicycliphilus denitrificans K601	10484301
YP_004389106.1	CDS	Alide2_3249	NC_015422.1	3389942	3391276	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2023 inner-membrane translocator; ABC transporter permease	complement(3389942..3391276)	Alicycliphilus denitrificans K601	10484302
YP_004389107.1	CDS	Alide2_3250	NC_015422.1	3391281	3392234	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2024 inner-membrane translocator; ABC transporter permease	complement(3391281..3392234)	Alicycliphilus denitrificans K601	10484303
YP_004389108.1	CDS	Alide2_3251	NC_015422.1	3392308	3393543	R	PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2025 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(3392308..3393543)	Alicycliphilus denitrificans K601	10484304
YP_004389109.1	CDS	Alide2_3252	NC_015422.1	3393684	3395321	R	KEGG: dia:Dtpsy_2026 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(3393684..3395321)	Alicycliphilus denitrificans K601	10484305
YP_004389110.1	CDS	Alide2_3253	NC_015422.1	3395464	3396951	D	KEGG: ajs:Ajs_1677 hypothetical protein; HAMAP: Uncharacterised protein family UPF0061; PFAM: Uncharacterised protein family UPF0061; hypothetical protein	3395464..3396951	Alicycliphilus denitrificans K601	10484306
YP_004389111.1	CDS	Alide2_3254	NC_015422.1	3396948	3397361	D	TIGRFAM: Methionine sulphoxide reductase B; KEGG: dia:Dtpsy_2028 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; methionine-R-sulfoxide reductase	3396948..3397361	Alicycliphilus denitrificans K601	10484307
YP_004389112.1	CDS	Alide2_3255	NC_015422.1	3397358	3397915	D	KEGG: ajs:Ajs_1675 intracellular septation protein A; TIGRFAM: Intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A	3397358..3397915	Alicycliphilus denitrificans K601	10484308
YP_004389113.1	CDS	Alide2_3256	NC_015422.1	3397912	3398190	D	PFAM: BolA protein; KEGG: dia:Dtpsy_2030 BolA family protein; BolA family protein	3397912..3398190	Alicycliphilus denitrificans K601	10484309
YP_004389114.1	CDS	Alide2_3257	NC_015422.1	3398257	3399042	D	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: dia:Dtpsy_2031 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	3398257..3399042	Alicycliphilus denitrificans K601	10484310
YP_004389115.1	CDS	Alide2_3258	NC_015422.1	3399248	3399559	D	PFAM: Protein of unknown function DUF1049; KEGG: dia:Dtpsy_1389 hypothetical protein; hypothetical protein	3399248..3399559	Alicycliphilus denitrificans K601	10484311
YP_004389116.1	CDS	Alide2_3259	NC_015422.1	3399549	3400706	D	KEGG: ajs:Ajs_2472 tetratricopeptide repeat protein; hypothetical protein	3399549..3400706	Alicycliphilus denitrificans K601	10484312
YP_004389117.1	CDS	Alide2_3260	NC_015422.1	3400706	3401026	D	KEGG: ajs:Ajs_2473 hypothetical protein; hypothetical protein	3400706..3401026	Alicycliphilus denitrificans K601	10484313
YP_004389118.1	CDS	Alide2_3261	NC_015422.1	3401115	3404075	D	KEGG: dia:Dtpsy_1386 putative monovalent cation/H+ antiporter subunit A; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; Na+/H+ antiporter MnhB subunit-related protein; NADH dehydrogenase (quinone)	3401115..3404075	Alicycliphilus denitrificans K601	10484314
YP_004389119.1	CDS	Alide2_3262	NC_015422.1	3404076	3404441	D	PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_1385 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L	3404076..3404441	Alicycliphilus denitrificans K601	10484315
YP_004389120.1	CDS	Alide2_3263	NC_015422.1	3404503	3406215	D	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: ajs:Ajs_2476 putative monovalent cation/H+ antiporter subunit D; NADH/Ubiquinone/plastoquinone (complex I)	3404503..3406215	Alicycliphilus denitrificans K601	10484316
YP_004389121.1	CDS	Alide2_3264	NC_015422.1	3406212	3406703	D	PFAM: cation antiporter; KEGG: dia:Dtpsy_1383 putative monovalent cation/H+ antiporter subunit E; cation antiporter	3406212..3406703	Alicycliphilus denitrificans K601	10484317
YP_004389122.1	CDS	Alide2_3265	NC_015422.1	3406700	3406981	D	PFAM: Multiple resistance and pH regulation protein F; KEGG: dia:Dtpsy_1382 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F	3406700..3406981	Alicycliphilus denitrificans K601	10484318
YP_004389123.1	CDS	Alide2_3266	NC_015422.1	3406978	3407349	D	PFAM: Na+/H+ antiporter subunit; KEGG: dia:Dtpsy_1381 Na+/H+ antiporter subunit; Na+/H+ antiporter subunit	3406978..3407349	Alicycliphilus denitrificans K601	10484319
YP_004389124.1	CDS	Alide2_3267	NC_015422.1	3407352	3409127	D	PFAM: Peptidase M14, carboxypeptidase A; KEGG: dia:Dtpsy_1379 hypothetical protein; peptidase M14 carboxypeptidase A	3407352..3409127	Alicycliphilus denitrificans K601	10484320
YP_004389125.1	CDS	Alide2_3268	NC_015422.1	3409151	3409546	D	KEGG: dia:Dtpsy_1374 camphor resistance protein CrcB; TIGRFAM: Camphor resistance CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein	3409151..3409546	Alicycliphilus denitrificans K601	10484321
YP_004389126.1	CDS	Alide2_3269	NC_015422.1	3409676	3410539	D	KEGG: ajs:Ajs_2487 hypothetical protein; TIGRFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; PFAM: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG; hypothetical protein	3409676..3410539	Alicycliphilus denitrificans K601	10484322
YP_004389127.1	CDS	Alide2_3270	NC_015422.1	3410554	3411717	R	PFAM: Major facilitator superfamily MFS-1; KEGG: dia:Dtpsy_1372 major facilitator superfamily MFS_1; major facilitator superfamily protein	complement(3410554..3411717)	Alicycliphilus denitrificans K601	10484323
YP_004389128.1	CDS	Alide2_3271	NC_015422.1	3411714	3413312	R	PFAM: DNA recombination RmuC; KEGG: azo:azo2787 putative RumC-like protein; RmuC-domain-containing protein	complement(3411714..3413312)	Alicycliphilus denitrificans K601	10484324
YP_004389129.1	CDS	Alide2_3272	NC_015422.1	3413386	3414366	R	KEGG: dia:Dtpsy_1370 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Glyoxylate reductase	complement(3413386..3414366)	Alicycliphilus denitrificans K601	10484325
YP_004389130.1	CDS	Alide2_3273	NC_015422.1	3414383	3415795	R	KEGG: ajs:Ajs_2491 putative transmembrane protein; putative transmembrane protein	complement(3414383..3415795)	Alicycliphilus denitrificans K601	10484326
YP_004389131.1	CDS	Alide2_3274	NC_015422.1	3415843	3417042	R	KEGG: dia:Dtpsy_1368 nicotinate phosphoribosyltransferase; TIGRFAM: Nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase	complement(3415843..3417042)	Alicycliphilus denitrificans K601	10484327
YP_004389132.1	CDS	Alide2_3275	NC_015422.1	3417192	3417665	R	PFAM: Thioesterase superfamily; KEGG: dia:Dtpsy_1367 thioesterase superfamily protein; thioesterase superfamily protein	complement(3417192..3417665)	Alicycliphilus denitrificans K601	10484328
YP_004389133.1	CDS	Alide2_3276	NC_015422.1	3417923	3418477	D	KEGG: dia:Dtpsy_1366 phasin family protein; TIGRFAM: Phasin, subfamily 1; PFAM: Phasin; phasin family protein	3417923..3418477	Alicycliphilus denitrificans K601	10484329
YP_004389134.1	CDS	Alide2_3277	NC_015422.1	3418761	3419810	D	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_1607 extracellular solute-binding protein; family 1 extracellular solute-binding protein	3418761..3419810	Alicycliphilus denitrificans K601	10484330
YP_004389135.1	CDS	Alide2_3278	NC_015422.1	3419925	3420683	D	KEGG: dia:Dtpsy_2108 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxy-2-methylbutyryl-CoA dehydrogenase	3419925..3420683	Alicycliphilus denitrificans K601	10484331
YP_004389136.1	CDS	Alide2_3279	NC_015422.1	3421209	3422588	R	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1604 phage integrase family protein; integrase family protein	complement(3421209..3422588)	Alicycliphilus denitrificans K601	10484335
YP_004389137.1	CDS	Alide2_3280	NC_015422.1	3422919	3423464	R	manually curated; KEGG: ajs:Ajs_1603 hypothetical protein; hypothetical protein	complement(3422919..3423464)	Alicycliphilus denitrificans K601	10484336
YP_004389138.1	CDS	Alide2_3281	NC_015422.1	3423461	3423907	R	manually curated; KEGG: ajs:Ajs_1602 hypothetical protein; hypothetical protein	complement(3423461..3423907)	Alicycliphilus denitrificans K601	10484337
YP_004389139.1	CDS	Alide2_3282	NC_015422.1	3423915	3424190	R	KEGG: ajs:Ajs_1601 hypothetical protein; hypothetical protein	complement(3423915..3424190)	Alicycliphilus denitrificans K601	10484338
YP_004389140.1	CDS	Alide2_3283	NC_015422.1	3424187	3425218	R	TIGRFAM: ParB-related, ThiF-related cassette, protein D; KEGG: ajs:Ajs_1600 hypothetical protein; PRTRC system protein D	complement(3424187..3425218)	Alicycliphilus denitrificans K601	10484339
YP_004389141.1	CDS	Alide2_3284	NC_015422.1	3425577	3426215	D	hypothetical protein	3425577..3426215	Alicycliphilus denitrificans K601	10484340
YP_004389142.1	CDS	Alide2_3285	NC_015422.1	3426474	3427574	D	KEGG: ajs:Ajs_1599 hypothetical protein; hypothetical protein	3426474..3427574	Alicycliphilus denitrificans K601	10484341
YP_004389143.1	CDS	Alide2_3286	NC_015422.1	3427579	3427932	R	KEGG: ajs:Ajs_1598 nucleoid protein H-NS; PFAM: Histone-like nucleoid-structuring protein H-NS; SMART: Histone-like nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS	complement(3427579..3427932)	Alicycliphilus denitrificans K601	10484342
YP_004389144.1	CDS	Alide2_3287	NC_015422.1	3428029	3428247	R	hypothetical protein	complement(3428029..3428247)	Alicycliphilus denitrificans K601	10484343
YP_004389145.1	CDS	Alide2_3288	NC_015422.1	3428244	3429089	R	KEGG: ajs:Ajs_1597 UBA/ThiF-type NAD/FAD binding protein; TIGRFAM: ParB-related, ThiF-related cassette, ThiF; PFAM: UBA/THIF-type NAD/FAD binding fold; PRTRC system ThiF family protein	complement(3428244..3429089)	Alicycliphilus denitrificans K601	10484344
YP_004389146.1	CDS	Alide2_3289	NC_015422.1	3429143	3429856	R	KEGG: ajs:Ajs_1596 hypothetical protein; TIGRFAM: ParB-related, ThiF-related cassette, protein A; PFAM: Domain of unknown function DUF2016; PRTRC system protein A	complement(3429143..3429856)	Alicycliphilus denitrificans K601	10484345
YP_004389147.1	CDS	Alide2_3290	NC_015422.1	3429856	3430596	R	TIGRFAM: ParB-related, ThiF-related cassette, protein B; KEGG: ajs:Ajs_1595 hypothetical protein; PRTRC system protein B	complement(3429856..3430596)	Alicycliphilus denitrificans K601	10484346
YP_004389148.1	CDS	Alide2_3291	NC_015422.1	3430625	3431668	R	TIGRFAM: ParB-related, ThiF-related cassette, protein F; KEGG: ajs:Ajs_1594 hypothetical protein; PRTRC system protein F	complement(3430625..3431668)	Alicycliphilus denitrificans K601	10484347
YP_004389149.1	CDS	Alide2_3292	NC_015422.1	3431680	3432123	R	TIGRFAM: ParB-related, ThiF-related cassette, protein C; KEGG: ajs:Ajs_1593 hypothetical protein; ParB-related,ThiF-related cassette, protein C	complement(3431680..3432123)	Alicycliphilus denitrificans K601	10484348
YP_004389150.1	CDS	Alide2_3293	NC_015422.1	3432220	3432702	R	TIGRFAM: ParB-related, ThiF-related cassette, protein E; KEGG: ajs:Ajs_1592 hypothetical protein; PRTRC system protein E	complement(3432220..3432702)	Alicycliphilus denitrificans K601	10484349
YP_004389151.1	CDS	Alide2_3294	NC_015422.1	3432812	3434575	R	TIGRFAM: ParB-related, ThiF-related cassette, ParB; ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_1591 ParB family protein; SMART: ParB-like nuclease; PRTRC system ParB family protein	complement(3432812..3434575)	Alicycliphilus denitrificans K601	10484350
YP_004389152.1	CDS	Alide2_3295	NC_015422.1	3434660	3435160	R	KEGG: ajs:Ajs_1590 hypothetical protein; hypothetical protein	complement(3434660..3435160)	Alicycliphilus denitrificans K601	10484351
YP_004389153.1	CDS	Alide2_3296	NC_015422.1	3435384	3435788	D	KEGG: dia:Dtpsy_2126 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein	3435384..3435788	Alicycliphilus denitrificans K601	10484352
YP_004389154.1	CDS	Alide2_3297	NC_015422.1	3435861	3436181	D	KEGG: dia:Dtpsy_2127 hypothetical protein; hypothetical protein	3435861..3436181	Alicycliphilus denitrificans K601	10484353
YP_004389155.1	CDS	Alide2_3298	NC_015422.1	3436225	3437070	R	KEGG: ajs:Ajs_1585 putative EA31 gene protein, phage lambda; hypothetical protein	complement(3436225..3437070)	Alicycliphilus denitrificans K601	10484354
YP_004389156.1	CDS	Alide2_3299	NC_015422.1	3437072	3438694	R	KEGG: ajs:Ajs_1584 putative EA59 gene protein, phage lambda; hypothetical protein	complement(3437072..3438694)	Alicycliphilus denitrificans K601	10484355
YP_004389157.1	CDS	Alide2_3300	NC_015422.1	3438824	3439669	R	manually curated; KEGG: dia:Dtpsy_2166 hypothetical protein; hypothetical protein	complement(3438824..3439669)	Alicycliphilus denitrificans K601	10484356
YP_004389158.1	CDS	Alide2_3301	NC_015422.1	3439666	3440949	R	KEGG: rfr:Rfer_1072 hypothetical protein; hypothetical protein	complement(3439666..3440949)	Alicycliphilus denitrificans K601	10484357
YP_004389159.1	CDS	Alide2_3302	NC_015422.1	3440986	3441849	R	PFAM: Phage Gp37Gp68; KEGG: dia:Dtpsy_2170 Gp37Gp68 family protein; Gp37Gp68 family protein	complement(3440986..3441849)	Alicycliphilus denitrificans K601	10484358
YP_004389160.1	CDS	Alide2_3303	NC_015422.1	3441961	3442905	R	PFAM: Protein of unknown function DUF1814; KEGG: dia:Dtpsy_2171 hypothetical protein; hypothetical protein	complement(3441961..3442905)	Alicycliphilus denitrificans K601	10484359
YP_004389161.1	CDS	Alide2_3304	NC_015422.1	3442898	3443509	R	KEGG: vei:Veis_2691 hypothetical protein; hypothetical protein	complement(3442898..3443509)	Alicycliphilus denitrificans K601	10484360
YP_004389162.1	CDS	Alide2_3305	NC_015422.1	3444024	3444356	D	KEGG: dia:Dtpsy_2173 hypothetical protein; hypothetical protein	3444024..3444356	Alicycliphilus denitrificans K601	10484361
YP_004389163.1	CDS	Alide2_3306	NC_015422.1	3444664	3445338	D	KEGG: dia:Dtpsy_2174 hypothetical protein; hypothetical protein	3444664..3445338	Alicycliphilus denitrificans K601	10484362
YP_004389164.1	CDS	Alide2_3307	NC_015422.1	3445411	3446823	R	KEGG: dia:Dtpsy_2175 hypothetical protein; hypothetical protein	complement(3445411..3446823)	Alicycliphilus denitrificans K601	10484363
YP_004389165.1	CDS	Alide2_3308	NC_015422.1	3446838	3447749	R	KEGG: dia:Dtpsy_2176 hypothetical protein; hypothetical protein	complement(3446838..3447749)	Alicycliphilus denitrificans K601	10484364
YP_004389166.1	CDS	Alide2_3309	NC_015422.1	3448201	3453243	D	SMART: DEAD-like helicase, N-terminal; KEGG: ajs:Ajs_1578 helicase domain-containing protein; DEAD-like helicase	3448201..3453243	Alicycliphilus denitrificans K601	10484365
YP_004389167.1	CDS	Alide2_3310	NC_015422.1	3453809	3454327	D	manually curated; KEGG: ajs:Ajs_1576 hypothetical protein; hypothetical protein	3453809..3454327	Alicycliphilus denitrificans K601	10484366
YP_004389168.1	CDS	Alide2_3311	NC_015422.1	3454298	3454528	R	KEGG: ajs:Ajs_1575 hypothetical protein; hypothetical protein	complement(3454298..3454528)	Alicycliphilus denitrificans K601	10484367
YP_004389169.1	CDS	Alide2_3312	NC_015422.1	3454655	3455167	D	KEGG: ajs:Ajs_1574 hypothetical protein; hypothetical protein	3454655..3455167	Alicycliphilus denitrificans K601	10484368
YP_004389170.1	CDS	Alide2_3313	NC_015422.1	3455274	3455486	R	KEGG: ajs:Ajs_1573 hypothetical protein; hypothetical protein	complement(3455274..3455486)	Alicycliphilus denitrificans K601	10484369
YP_004389171.1	CDS	Alide2_3314	NC_015422.1	3456028	3456336	D	KEGG: ajs:Ajs_1572 hypothetical protein; hypothetical protein	3456028..3456336	Alicycliphilus denitrificans K601	10484370
YP_004389172.1	CDS	Alide2_3315	NC_015422.1	3456389	3458857	R	KEGG: ajs:Ajs_1571 putative DNA repair ATPase; putative DNA repair ATPase	complement(3456389..3458857)	Alicycliphilus denitrificans K601	10484371
YP_004389173.1	CDS	Alide2_3316	NC_015422.1	3459072	3459473	D	KEGG: ajs:Ajs_1570 hypothetical protein; hypothetical protein	3459072..3459473	Alicycliphilus denitrificans K601	10484372
YP_004389174.1	CDS	Alide2_3317	NC_015422.1	3459470	3460435	D	PFAM: Protein of unknown function DUF1814; KEGG: ajs:Ajs_1569 hypothetical protein; hypothetical protein	3459470..3460435	Alicycliphilus denitrificans K601	10484373
YP_004389175.1	CDS	Alide2_3318	NC_015422.1	3460486	3461766	R	PFAM: Metallo-dependent phosphatase; KEGG: ajs:Ajs_1567 metallophosphoesterase; metallophosphoesterase	complement(3460486..3461766)	Alicycliphilus denitrificans K601	10484374
YP_004389176.1	CDS	Alide2_3319	NC_015422.1	3461778	3463061	R	KEGG: ajs:Ajs_1566 hypothetical protein; hypothetical protein	complement(3461778..3463061)	Alicycliphilus denitrificans K601	10484375
YP_004389177.1	CDS	Alide2_3320	NC_015422.1	3463353	3464306	D	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein; integrase family protein	3463353..3464306	Alicycliphilus denitrificans K601	10484376
YP_004389178.1	CDS	Alide2_3321	NC_015422.1	3464312	3465556	D	PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_1564 hypothetical protein; hypothetical protein	3464312..3465556	Alicycliphilus denitrificans K601	10484377
YP_004389179.1	CDS	Alide2_3322	NC_015422.1	3465615	3465854	R	PFAM: Prophage CP4-57 regulatory; KEGG: ajs:Ajs_1562 phage transcriptional regulator, AlpA; Prophage CP4-57 regulatory protein	complement(3465615..3465854)	Alicycliphilus denitrificans K601	10484378
YP_004389180.1	CDS	Alide2_3323	NC_015422.1	3466282	3467067	R	KEGG: ajs:Ajs_1561 hypothetical protein; hypothetical protein	complement(3466282..3467067)	Alicycliphilus denitrificans K601	10484379
YP_004389181.1	CDS	Alide2_3324	NC_015422.1	3467558	3468139	D	KEGG: ajs:Ajs_1560 hypothetical protein; hypothetical protein	3467558..3468139	Alicycliphilus denitrificans K601	10484380
YP_004389182.1	CDS	Alide2_3325	NC_015422.1	3468173	3468394	D	KEGG: ajs:Ajs_1559 hypothetical protein; hypothetical protein	3468173..3468394	Alicycliphilus denitrificans K601	10484381
YP_004389183.1	CDS	Alide2_3326	NC_015422.1	3468391	3468738	D	KEGG: ajs:Ajs_1558 hypothetical protein; hypothetical protein	3468391..3468738	Alicycliphilus denitrificans K601	10484382
YP_004389184.1	CDS	Alide2_3328	NC_015422.1	3470430	3471434	D	KEGG: ajs:Ajs_1556 phage P4 alpha zinc-binding domain-containing protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein	3470430..3471434	Alicycliphilus denitrificans K601	10484384
YP_004389185.1	CDS	Alide2_3329	NC_015422.1	3471719	3472783	D	KEGG: ajs:Ajs_1554 hypothetical protein; hypothetical protein	3471719..3472783	Alicycliphilus denitrificans K601	10484385
YP_004389186.1	CDS	Alide2_3330	NC_015422.1	3472865	3473434	R	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ajs:Ajs_1553 putative phage repressor; peptidase S24/S26A/S26B	complement(3472865..3473434)	Alicycliphilus denitrificans K601	10484386
YP_004389187.1	CDS	Alide2_3331	NC_015422.1	3473876	3474190	D	KEGG: ajs:Ajs_1552 hypothetical protein; hypothetical protein	3473876..3474190	Alicycliphilus denitrificans K601	10484387
YP_004389188.1	CDS	Alide2_3332	NC_015422.1	3474191	3474853	D	KEGG: ajs:Ajs_1551 hypothetical protein; hypothetical protein	3474191..3474853	Alicycliphilus denitrificans K601	10484388
YP_004389189.1	CDS	Alide2_3333	NC_015422.1	3474907	3476700	D	PFAM: Uncharacterised protein family, helicase/relaxase, putative; KEGG: ajs:Ajs_1550 FHA domain-containing protein; Relaxase	3474907..3476700	Alicycliphilus denitrificans K601	10484389
YP_004389190.1	CDS	Alide2_3334	NC_015422.1	3476702	3478603	D	TIGRFAM: Conjugative coupling factor TraG/TraD; KEGG: ajs:Ajs_1549 hypothetical protein; conjugative coupling factor TraD	3476702..3478603	Alicycliphilus denitrificans K601	10484390
YP_004389191.1	CDS	Alide2_3335	NC_015422.1	3478600	3479223	D	KEGG: ajs:Ajs_1548 hypothetical protein; hypothetical protein	3478600..3479223	Alicycliphilus denitrificans K601	10484391
YP_004389192.1	CDS	Alide2_3336	NC_015422.1	3479239	3479484	R	manually curated; PFAM: Helix-turn-helix type 3; KEGG: ajs:Ajs_1547 helix-turn-helix domain-containing protein; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(3479239..3479484)	Alicycliphilus denitrificans K601	10484392
YP_004389193.1	CDS	Alide2_3337	NC_015422.1	3479664	3479996	D	manually curated; KEGG: ajs:Ajs_1546 hypothetical protein; hypothetical protein	3479664..3479996	Alicycliphilus denitrificans K601	10484393
YP_004389194.1	CDS	Alide2_3338	NC_015422.1	3480175	3480672	D	KEGG: ajs:Ajs_1545 hypothetical protein; hypothetical protein	3480175..3480672	Alicycliphilus denitrificans K601	10484394
YP_004389195.1	CDS	Alide2_3339	NC_015422.1	3480812	3481339	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_1544 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	3480812..3481339	Alicycliphilus denitrificans K601	10484395
YP_004389196.1	CDS	Alide2_3340	NC_015422.1	3481856	3482218	D	KEGG: ajs:Ajs_1542 hypothetical protein; hypothetical protein	3481856..3482218	Alicycliphilus denitrificans K601	10484396
YP_004389197.1	CDS	Alide2_3341	NC_015422.1	3482250	3482549	D	KEGG: ajs:Ajs_1541 TraL family protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL	3482250..3482549	Alicycliphilus denitrificans K601	10484397
YP_004389198.1	CDS	Alide2_3342	NC_015422.1	3482564	3483130	D	TIGRFAM: Pilus assembly TraE; KEGG: ajs:Ajs_1540 plasmid-like conjugative transfer protein TraE; type IV conjugative transfer system protein TraE	3482564..3483130	Alicycliphilus denitrificans K601	10484398
YP_004389199.1	CDS	Alide2_3343	NC_015422.1	3483117	3484124	D	KEGG: ajs:Ajs_1539 hypothetical protein; hypothetical protein	3483117..3484124	Alicycliphilus denitrificans K601	10484399
YP_004389200.1	CDS	Alide2_3344	NC_015422.1	3484121	3485557	D	KEGG: ajs:Ajs_1538 TraB pilus assembly family protein; TraB pilus assembly family protein	3484121..3485557	Alicycliphilus denitrificans K601	10484400
YP_004389201.1	CDS	Alide2_3345	NC_015422.1	3485541	3486380	D	PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_1537 periplasmic thiol:disulfide interchange protein; disulfide bond isomerase, DsbC/G	3485541..3486380	Alicycliphilus denitrificans K601	10484401
YP_004389202.1	CDS	Alide2_3346	NC_015422.1	3486377	3487042	D	KEGG: ajs:Ajs_1536 hypothetical protein; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV	3486377..3487042	Alicycliphilus denitrificans K601	10484402
YP_004389203.1	CDS	Alide2_3347	NC_015422.1	3487050	3489632	D	TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_1535 hypothetical protein; type-IV secretion system protein TraC	3487050..3489632	Alicycliphilus denitrificans K601	10484403
YP_004389204.1	CDS	Alide2_3348	NC_015422.1	3489629	3489985	D	KEGG: ajs:Ajs_1534 hypothetical protein; hypothetical protein	3489629..3489985	Alicycliphilus denitrificans K601	10484404
YP_004389205.1	CDS	Alide2_3349	NC_015422.1	3489982	3490575	D	KEGG: ajs:Ajs_1533 hypothetical protein; TIGRFAM: Peptidase S26C, conjugative transfer signal peptidase TraF; PFAM: Peptidase S26, conserved region; conjugative transfer signal peptidase TraF	3489982..3490575	Alicycliphilus denitrificans K601	10484405
YP_004389206.1	CDS	Alide2_3350	NC_015422.1	3490586	3490981	D	KEGG: ajs:Ajs_1532 hypothetical protein; hypothetical protein	3490586..3490981	Alicycliphilus denitrificans K601	10484406
YP_004389207.1	CDS	Alide2_3351	NC_015422.1	3490978	3491613	D	TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_1531 membrane lipoprotein lipid attachment site; type-F conjugative transfer system protein TraW	3490978..3491613	Alicycliphilus denitrificans K601	10484407
YP_004389208.1	CDS	Alide2_3352	NC_015422.1	3491610	3492635	D	PFAM: TraU; KEGG: ajs:Ajs_1530 TraU family protein; TraU family protein	3491610..3492635	Alicycliphilus denitrificans K601	10484408
YP_004389209.1	CDS	Alide2_3353	NC_015422.1	3492622	3493386	D	KEGG: ajs:Ajs_1529 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC	3492622..3493386	Alicycliphilus denitrificans K601	10484409
YP_004389210.1	CDS	Alide2_3354	NC_015422.1	3493396	3495813	D	KEGG: ajs:Ajs_1528 conjugal transfer mating pair stabilization protein TraN; conjugal transfer mating pair stabilization protein TraN	3493396..3495813	Alicycliphilus denitrificans K601	10484410
YP_004389211.1	CDS	Alide2_3355	NC_015422.1	3495810	3496199	D	KEGG: ajs:Ajs_1527 hypothetical protein; hypothetical protein	3495810..3496199	Alicycliphilus denitrificans K601	10484411
YP_004389212.1	CDS	Alide2_3356	NC_015422.1	3496210	3497085	D	KEGG: ajs:Ajs_1526 hypothetical protein; TIGRFAM: Type IV conjugative transfer system protein TraF; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; TraF-like protein	3496210..3497085	Alicycliphilus denitrificans K601	10484412
YP_004389213.1	CDS	Alide2_3357	NC_015422.1	3497095	3498543	D	PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_1525 TraH family protein; TraH family protein	3497095..3498543	Alicycliphilus denitrificans K601	10484413
YP_004389214.1	CDS	Alide2_3358	NC_015422.1	3498565	3501336	D	PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_1524 TraG domain-containing protein; TraG domain-containing protein	3498565..3501336	Alicycliphilus denitrificans K601	10484414
YP_004389215.1	CDS	Alide2_3359	NC_015422.1	3501342	3501692	R	KEGG: ajs:Ajs_1521 hypothetical protein; hypothetical protein	complement(3501342..3501692)	Alicycliphilus denitrificans K601	10484415
YP_004389216.1	CDS	Alide2_3360	NC_015422.1	3501739	3502440	R	PFAM: Integrase, catalytic core, phage; KEGG: ajs:Ajs_1565 phage integrase family protein; integrase family protein	complement(3501739..3502440)	Alicycliphilus denitrificans K601	10484416
YP_004389217.1	CDS	Alide2_3361	NC_015422.1	3502609	3503034	R	PFAM: Transposase, IS4-like; KEGG: pol:Bpro_4722 IS4 family transposase; transposase IS4 family protein	complement(3502609..3503034)	Alicycliphilus denitrificans K601	10484417
YP_004389218.1	CDS	Alide2_3362	NC_015422.1	3503131	3503418	D	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_1490 hypothetical protein; transposase IS3/IS911 family protein	3503131..3503418	Alicycliphilus denitrificans K601	10484418
YP_004389219.1	CDS	Alide2_3365	NC_015422.1	3504073	3504933	D	KEGG: ajs:Ajs_1514 hypothetical protein; TIGRFAM: Polyphosphate kinase 2, PA0141; PFAM: Polyphosphate kinase-2-related; polyphosphate kinase 2	3504073..3504933	Alicycliphilus denitrificans K601	10484421
YP_004389220.1	CDS	Alide2_3366	NC_015422.1	3504953	3507406	D	PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; manually curated; KEGG: ajs:Ajs_1513 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; heavy metal translocating P-type ATPase	3504953..3507406	Alicycliphilus denitrificans K601	10484422
YP_004389221.1	CDS	Alide2_3367	NC_015422.1	3507498	3508778	D	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_1512 major facilitator superfamily transporter; major facilitator superfamily protein	3507498..3508778	Alicycliphilus denitrificans K601	10484423
YP_004389222.1	CDS	Alide2_3368	NC_015422.1	3508781	3509395	D	PFAM: LemA; KEGG: ajs:Ajs_1511 LemA family protein; LemA family protein	3508781..3509395	Alicycliphilus denitrificans K601	10484424
YP_004389223.1	CDS	Alide2_3369	NC_015422.1	3509392	3510276	D	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1510 hypothetical protein; hypothetical protein	3509392..3510276	Alicycliphilus denitrificans K601	10484425
YP_004389224.1	CDS	Alide2_3370	NC_015422.1	3510279	3510776	D	PFAM: Protein of unknown function DUF477; KEGG: ajs:Ajs_1509 hypothetical protein; hypothetical protein	3510279..3510776	Alicycliphilus denitrificans K601	10484426
YP_004389225.1	CDS	Alide2_3371	NC_015422.1	3510802	3512160	D	KEGG: ajs:Ajs_1508 beta-lactamase domain-containing protein; PFAM: Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	3510802..3512160	Alicycliphilus denitrificans K601	10484427
YP_004389226.1	CDS	Alide2_3372	NC_015422.1	3512157	3513692	D	KEGG: ajs:Ajs_1507 thymidine phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase, C-terminal; Glycosyl transferase, family 3; TIGRFAM: Thymidine phosphorylase, type 2; HAMAP: Thymidine phosphorylase, type 2; SMART: Pyrimidine nucleoside phosphorylase, C-terminal; thymidine phosphorylase	3512157..3513692	Alicycliphilus denitrificans K601	10484428
YP_004389227.1	CDS	Alide2_3373	NC_015422.1	3513689	3514588	D	KEGG: ajs:Ajs_1506 phosphoribosylpyrophosphate synthetase; TIGRFAM: Phosphoribosyl pyrophosphokinase; ribose-phosphate pyrophosphokinase	3513689..3514588	Alicycliphilus denitrificans K601	10484429
YP_004389228.1	CDS	Alide2_3374	NC_015422.1	3514585	3515748	D	KEGG: ajs:Ajs_1505 peptidase S1 and S6, chymotrypsin/Hap; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap	3514585..3515748	Alicycliphilus denitrificans K601	10484430
YP_004389229.1	CDS	Alide2_3375	NC_015422.1	3515758	3516216	D	KEGG: dba:Dbac_2177 carbamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; carbamate kinase	3515758..3516216	Alicycliphilus denitrificans K601	10484431
YP_004389230.1	CDS	Alide2_3376	NC_015422.1	3516331	3516975	D	KEGG: ajs:Ajs_1500 hypothetical protein; hypothetical protein	3516331..3516975	Alicycliphilus denitrificans K601	10484432
YP_004389231.1	CDS	Alide2_3377	NC_015422.1	3517089	3518774	R	TIGRFAM: Mercury reductase, MerA; KEGG: mms:mma_1749 putative mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase	complement(3517089..3518774)	Alicycliphilus denitrificans K601	10484433
YP_004389232.1	CDS	Alide2_3379	NC_015422.1	3518935	3519210	R	KEGG: shn:Shewana3_4343 mercuric transport protein periplasmic component; TIGRFAM: Mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; mercuric transport protein periplasmic component	complement(3518935..3519210)	Alicycliphilus denitrificans K601	10484435
YP_004389233.1	CDS	Alide2_3380	NC_015422.1	3519223	3519573	R	PFAM: Mercuric transport protein MerT; KEGG: net:Neut_2570 putative mercuric transport protein; Mercuric transport protein MerT	complement(3519223..3519573)	Alicycliphilus denitrificans K601	10484436
YP_004389234.1	CDS	Alide2_3381	NC_015422.1	3519645	3520067	D	TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: net:Neut_2571 putative transcriptional regulator MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	3519645..3520067	Alicycliphilus denitrificans K601	10484437
YP_004389235.1	CDS	Alide2_3383	NC_015422.1	3521840	3523102	R	KEGG: ajs:Ajs_1486 hypothetical protein; hypothetical protein	complement(3521840..3523102)	Alicycliphilus denitrificans K601	10484439
YP_004389236.1	CDS	Alide2_3384	NC_015422.1	3523530	3523838	D	PFAM: Flagellar hook-basal body complex protein FliE; manually curated; TIGRFAM: Flagellar hook-basal body complex protein FliE; KEGG: ajs:Ajs_1485 flagellar hook-basal body complex subunit FliE; HAMAP: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein fliE	3523530..3523838	Alicycliphilus denitrificans K601	10484440
YP_004389237.1	CDS	Alide2_3385	NC_015422.1	3523938	3524228	R	KEGG: dia:Dtpsy_2181 hypothetical protein; hypothetical protein	complement(3523938..3524228)	Alicycliphilus denitrificans K601	10484441
YP_004389238.1	CDS	Alide2_3387	NC_015422.1	3524618	3527749	R	KEGG: dia:Dtpsy_2183 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	complement(3524618..3527749)	Alicycliphilus denitrificans K601	10484443
YP_004389239.1	CDS	Alide2_3390	NC_015422.1	3528438	3528716	D	PFAM: Transposase IS3/IS911family; KEGG: dia:Dtpsy_3180 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	3528438..3528716	Alicycliphilus denitrificans K601	10484446
YP_004389240.1	CDS	Alide2_3391	NC_015422.1	3528764	3529588	D	PFAM: Integrase, catalytic core; KEGG: dia:Dtpsy_3179 integrase catalytic region; integrase catalytic subunit	3528764..3529588	Alicycliphilus denitrificans K601	10484447
YP_004389241.1	CDS	Alide2_3392	NC_015422.1	3529763	3530116	D	KEGG: dia:Dtpsy_2203 hypothetical protein; hypothetical protein	3529763..3530116	Alicycliphilus denitrificans K601	10484448
YP_004389242.1	CDS	Alide2_3394	NC_015422.1	3530753	3531418	D	KEGG: dia:Dtpsy_2204 transcriptional regulator, ArsR family; PFAM: Rhodanese-like; HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; Rhodanese-like; Rhodanese-like protein	3530753..3531418	Alicycliphilus denitrificans K601	10484450
YP_004389243.1	CDS	Alide2_3395	NC_015422.1	3531424	3531996	D	PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_2205 methyltransferase type 11; type 11 methyltransferase	3531424..3531996	Alicycliphilus denitrificans K601	10484451
YP_004389244.1	CDS	Alide2_3396	NC_015422.1	3532019	3532375	D	PFAM: Sulphur relay, DsrE/F-like protein; KEGG: dia:Dtpsy_2206 DsrE family protein; DsrE family protein	3532019..3532375	Alicycliphilus denitrificans K601	10484452
YP_004389245.1	CDS	Alide2_3397	NC_015422.1	3532401	3533060	D	KEGG: dia:Dtpsy_2207 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11; type 11 methyltransferase	3532401..3533060	Alicycliphilus denitrificans K601	10484453
YP_004389246.1	CDS	Alide2_3399	NC_015422.1	3533957	3535258	D	PFAM: Outer membrane efflux protein; KEGG: dia:Dtpsy_2209 outer membrane efflux protein; outer membrane efflux protein	3533957..3535258	Alicycliphilus denitrificans K601	10484455
YP_004389247.1	CDS	Alide2_3400	NC_015422.1	3535262	3536863	D	KEGG: dia:Dtpsy_2210 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	3535262..3536863	Alicycliphilus denitrificans K601	10484456
YP_004389248.1	CDS	Alide2_3401	NC_015422.1	3536874	3537215	D	KEGG: dia:Dtpsy_2211 nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein PII; SMART: Nitrogen regulatory protein PII; nitrogen regulatory protein P-II	3536874..3537215	Alicycliphilus denitrificans K601	10484457
YP_004389249.1	CDS	Alide2_3402	NC_015422.1	3537239	3540424	D	KEGG: dia:Dtpsy_2212 heavy metal efflux pump, CzcA family; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump	3537239..3540424	Alicycliphilus denitrificans K601	10484458
YP_004389250.1	CDS	Alide2_3403	NC_015422.1	3540499	3543006	D	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_2214 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	3540499..3543006	Alicycliphilus denitrificans K601	10484459
YP_004389251.1	CDS	Alide2_3404	NC_015422.1	3543128	3543814	D	TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; KEGG: dia:Dtpsy_2215 two component heavy metal response transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; two component heavy metal response transcriptional regulator	3543128..3543814	Alicycliphilus denitrificans K601	10484460
YP_004389252.1	CDS	Alide2_3405	NC_015422.1	3543811	3545184	D	TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; KEGG: dia:Dtpsy_2216 heavy metal sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; heavy metal sensor signal transduction histidine kinase	3543811..3545184	Alicycliphilus denitrificans K601	10484461
YP_004389253.1	CDS	Alide2_3406	NC_015422.1	3545378	3546424	R	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_2217 protein of unknown function DUF6 transmembrane; hypothetical protein	complement(3545378..3546424)	Alicycliphilus denitrificans K601	10484462
YP_004389254.1	CDS	Alide2_3407	NC_015422.1	3546709	3547062	D	KEGG: dia:Dtpsy_2218 hypothetical protein; hypothetical protein	3546709..3547062	Alicycliphilus denitrificans K601	10484463
YP_004389255.1	CDS	Alide2_3408	NC_015422.1	3547513	3547866	D	KEGG: dia:Dtpsy_2221 hypothetical protein; hypothetical protein	3547513..3547866	Alicycliphilus denitrificans K601	10484464
YP_004389256.1	CDS	Alide2_3409	NC_015422.1	3547993	3549120	R	KEGG: dia:Dtpsy_2222 ISRSO5-transposase protein; ISRSO5-transposase protein	complement(3547993..3549120)	Alicycliphilus denitrificans K601	10484465
YP_004389257.1	CDS	Alide2_3411	NC_015422.1	3550036	3551439	R	TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; KEGG: dia:Dtpsy_2224 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase	complement(3550036..3551439)	Alicycliphilus denitrificans K601	10484470
YP_004389258.1	CDS	Alide2_3412	NC_015422.1	3551436	3552650	R	TIGRFAM: O-succinylhomoserine sulfhydrylase; KEGG: dac:Daci_4768 O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-succinylhomoserine sulfhydrylase	complement(3551436..3552650)	Alicycliphilus denitrificans K601	10484471
YP_004389259.1	CDS	Alide2_3413	NC_015422.1	3552779	3554287	R	TIGRFAM: Amidophosphoribosyl transferase; KEGG: dia:Dtpsy_2226 amidophosphoribosyltransferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; amidophosphoribosyltransferase	complement(3552779..3554287)	Alicycliphilus denitrificans K601	10484472
YP_004389260.1	CDS	Alide2_3414	NC_015422.1	3554351	3554839	R	PFAM: Colicin V production, CvpA; Protein of unknown function DUF2474; KEGG: dia:Dtpsy_2227 colicin V production protein; Colicin V production protein	complement(3554351..3554839)	Alicycliphilus denitrificans K601	10484473
YP_004389261.1	CDS	Alide2_3415	NC_015422.1	3554853	3555701	R	PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_2228 sporulation domain protein; Sporulation domain-containing protein	complement(3554853..3555701)	Alicycliphilus denitrificans K601	10484474
YP_004389262.1	CDS	Alide2_3416	NC_015422.1	3555711	3557063	R	TIGRFAM: Folylpolyglutamate synthetase; KEGG: ajs:Ajs_2739 FolC bifunctional protein; PFAM: Mur ligase, central; Mur ligase, C-terminal; FolC bifunctional protein	complement(3555711..3557063)	Alicycliphilus denitrificans K601	10484475
YP_004389263.1	CDS	Alide2_3417	NC_015422.1	3557082	3557468	D	KEGG: dia:Dtpsy_2230 arsenate reductase and related; TIGRFAM: Transcriptional regulator Spx/MgsR; PFAM: Arsenate reductase-like; ArsC family protein	3557082..3557468	Alicycliphilus denitrificans K601	10484476
YP_004389264.1	CDS	Alide2_3418	NC_015422.1	3557589	3558260	D	KEGG: dia:Dtpsy_2231 17 kDa surface antigen; 17 kDa surface antigen	3557589..3558260	Alicycliphilus denitrificans K601	10484477
YP_004389265.1	CDS	Alide2_3419	NC_015422.1	3558321	3558638	D	PFAM: Protein of unknown function DUF1255; KEGG: dia:Dtpsy_2232 protein of unknown function DUF1255; hypothetical protein	3558321..3558638	Alicycliphilus denitrificans K601	10484478
YP_004389266.1	CDS	Alide2_3420	NC_015422.1	3558666	3560009	D	PFAM: Argininosuccinate synthase; TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: dia:Dtpsy_2233 argininosuccinate synthase; argininosuccinate synthase	3558666..3560009	Alicycliphilus denitrificans K601	10484479
YP_004389267.1	CDS	Alide2_3421	NC_015422.1	3560112	3562094	R	KEGG: tmz:Tmz1t_3466 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF modulated sigma54 specific transcriptional regulator	complement(3560112..3562094)	Alicycliphilus denitrificans K601	10484480
YP_004389268.1	CDS	Alide2_3422	NC_015422.1	3562280	3562786	R	PFAM: Acetone carboxylase, gamma subunit-related; KEGG: eba:ebA4702 acetone carboxylase gamma subunit; acetone carboxylase gamma subunit	complement(3562280..3562786)	Alicycliphilus denitrificans K601	10484481
YP_004389269.1	CDS	Alide2_3423	NC_015422.1	3562811	3565135	R	PFAM: Hydantoinase B/oxoprolinase; KEGG: tmz:Tmz1t_3470 hydantoinase B/oxoprolinase; Hydantoinase B/oxoprolinase	complement(3562811..3565135)	Alicycliphilus denitrificans K601	10484482
YP_004389270.1	CDS	Alide2_3424	NC_015422.1	3565147	3567291	R	PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: reu:Reut_C6172 acetone carboxylase, beta subunit; Hydantoinase/oxoprolinase	complement(3565147..3567291)	Alicycliphilus denitrificans K601	10484483
YP_004389271.1	CDS	Alide2_3425	NC_015422.1	3567671	3568390	R	KEGG: dia:Dtpsy_2234 ExsB protein; TIGRFAM: Queuosine synthesis; PFAM: Queuosine synthesis; exsB protein	complement(3567671..3568390)	Alicycliphilus denitrificans K601	10484484
YP_004389272.1	CDS	Alide2_3426	NC_015422.1	3568387	3569058	R	KEGG: dia:Dtpsy_2235 hypothetical protein; TIGRFAM: Protein of unknown function DUF165; PFAM: Protein of unknown function DUF165; hypothetical protein	complement(3568387..3569058)	Alicycliphilus denitrificans K601	10484485
YP_004389273.1	CDS	Alide2_3427	NC_015422.1	3569222	3569596	D	PFAM: SPW repeat; KEGG: dac:Daci_4779 SPW repeat-containing protein; SPW repeat-containing protein	3569222..3569596	Alicycliphilus denitrificans K601	10484486
YP_004389274.1	CDS	Alide2_3428	NC_015422.1	3569704	3570792	R	TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: dia:Dtpsy_2239 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; UDP-N-acetylenolpyruvoylglucosamine reductase	complement(3569704..3570792)	Alicycliphilus denitrificans K601	10484487
YP_004389275.1	CDS	Alide2_3429	NC_015422.1	3570856	3571341	D	PFAM: Protein of unknown function DUF520; KEGG: ajs:Ajs_2750 putative nucleotide-binding protein; hypothetical protein	3570856..3571341	Alicycliphilus denitrificans K601	10484488
YP_004389276.1	CDS	Alide2_3430	NC_015422.1	3571352	3571999	D	PFAM: Peptidase A2A, retrovirus RVP subgroup; KEGG: ajs:Ajs_2751 hypothetical protein; peptidase A2A	3571352..3571999	Alicycliphilus denitrificans K601	10484489
YP_004389277.1	CDS	Alide2_3431	NC_015422.1	3572029	3573027	D	KEGG: dia:Dtpsy_2242 putative metal dependent phosphohydrolase; putative metal dependent phosphohydrolase	3572029..3573027	Alicycliphilus denitrificans K601	10484490
YP_004389278.1	CDS	Alide2_3432	NC_015422.1	3573030	3573662	R	TIGRFAM: Glycerol-3-phosphate acyltransferase, bacteria; HAMAP: Glycerol-3-phosphate acyltransferase, bacteria; KEGG: dia:Dtpsy_2243 protein of unknown function DUF205; PFAM: Glycerol-3-phosphate acyltransferase, bacteria; glycerol-3-phosphate acyltransferase	complement(3573030..3573662)	Alicycliphilus denitrificans K601	10484491
YP_004389279.1	CDS	Alide2_3433	NC_015422.1	3573694	3574194	R	KEGG: ajs:Ajs_2754 YbaK/EbsC protein; TIGRFAM: Prolyl-tRNA editing protein, YbaK/EbsC; PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; ybaK/ebsC protein	complement(3573694..3574194)	Alicycliphilus denitrificans K601	10484492
YP_004389280.1	CDS	Alide2_3434	NC_015422.1	3574258	3575319	R	PFAM: NADP-dependent oxidoreductase domain; KEGG: ajs:Ajs_2755 aldo/keto reductase; NADP-dependent oxidoreductase domain-containing protein	complement(3574258..3575319)	Alicycliphilus denitrificans K601	10484493
YP_004389281.1	CDS	Alide2_3435	NC_015422.1	3575389	3576474	R	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: dac:Daci_4799 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase	complement(3575389..3576474)	Alicycliphilus denitrificans K601	10484494
YP_004389282.1	CDS	Alide2_3436	NC_015422.1	3576478	3578208	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dac:Daci_4800 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(3576478..3578208)	Alicycliphilus denitrificans K601	10484495
YP_004389283.1	CDS	Alide2_3437	NC_015422.1	3578272	3579600	R	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: dac:Daci_4801 extracellular solute-binding protein; family 1 extracellular solute-binding protein	complement(3578272..3579600)	Alicycliphilus denitrificans K601	10484496
YP_004389284.1	CDS	Alide2_3438	NC_015422.1	3579720	3580652	D	PFAM: Alpha/beta hydrolase fold-1; KEGG: dia:Dtpsy_2246 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein	3579720..3580652	Alicycliphilus denitrificans K601	10484497
YP_004389285.1	CDS	Alide2_3439	NC_015422.1	3580775	3581779	D	TIGRFAM: Diaminopimelate dehydrogenase; KEGG: ajs:Ajs_2757 diaminopimelate dehydrogenase; PFAM: Dihydrodipicolinate reductase, N-terminal; diaminopimelate dehydrogenase	3580775..3581779	Alicycliphilus denitrificans K601	10484498
YP_004389286.1	CDS	Alide2_3440	NC_015422.1	3581848	3582952	D	manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein	join(3581848..3581928,3581930..3582952)	Alicycliphilus denitrificans K601	10484499
YP_004389287.1	CDS	Alide2_3441	NC_015422.1	3582964	3585672	D	KEGG: dia:Dtpsy_2249 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; aminopeptidase N	3582964..3585672	Alicycliphilus denitrificans K601	10484500
YP_004389288.1	CDS	Alide2_3442	NC_015422.1	3585693	3586700	D	KEGG: xtr:100486364 fructose-1,6-bisphosphatase class 1-like; PFAM: Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase; fructose-bisphosphatase	3585693..3586700	Alicycliphilus denitrificans K601	10484501
YP_004389289.1	CDS	Alide2_3443	NC_015422.1	3587149	3588114	R	KEGG: sew:SeSA_B0128 antirestriction protein; manually curated; PFAM: Domain of unknown function DUF1738; hypothetical protein	complement(3587149..3588114)	Alicycliphilus denitrificans K601	10484503
YP_004389290.1	CDS	Alide2_3444	NC_015422.1	3588126	3588401	R	hypothetical protein	complement(3588126..3588401)	Alicycliphilus denitrificans K601	10484504
YP_004389291.1	CDS	Alide2_3445	NC_015422.1	3588708	3589061	R	KEGG: gca:Galf_1463 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein	complement(3588708..3589061)	Alicycliphilus denitrificans K601	10484505
YP_004389292.1	CDS	Alide2_3446	NC_015422.1	3589380	3589580	D	hypothetical protein	3589380..3589580	Alicycliphilus denitrificans K601	10484506
YP_004389293.1	CDS	Alide2_3447	NC_015422.1	3590250	3591032	R	hypothetical protein	complement(3590250..3591032)	Alicycliphilus denitrificans K601	10484507
YP_004389294.1	CDS	Alide2_3448	NC_015422.1	3591514	3591858	D	PFAM: Terminase small subunit; KEGG: mch:Mchl_1604 terminase small subunit; Terminase small subunit	3591514..3591858	Alicycliphilus denitrificans K601	10484508
YP_004389295.1	CDS	Alide2_3449	NC_015422.1	3592064	3593536	R	SMART: Primase, C-terminal 1; KEGG: aeh:Mlg_0791 ATPase-like protein; Primase 1	complement(3592064..3593536)	Alicycliphilus denitrificans K601	10484509
YP_004389296.1	CDS	Alide2_3450	NC_015422.1	3593537	3594088	R	KEGG: ava:Ava_3094 virulence-associated E; virulence-associated E	complement(3593537..3594088)	Alicycliphilus denitrificans K601	10484510
YP_004389297.1	CDS	Alide2_3451	NC_015422.1	3594075	3594305	R	hypothetical protein	complement(3594075..3594305)	Alicycliphilus denitrificans K601	10484511
YP_004389298.1	CDS	Alide2_3452	NC_015422.1	3594298	3594531	R	KEGG: glo:Glov_1426 hypothetical protein; hypothetical protein	complement(3594298..3594531)	Alicycliphilus denitrificans K601	10484512
YP_004389299.1	CDS	Alide2_3453	NC_015422.1	3594678	3595349	R	hypothetical protein	complement(3594678..3595349)	Alicycliphilus denitrificans K601	10484513
YP_004389300.1	CDS	Alide2_3454	NC_015422.1	3595358	3596602	R	PFAM: Integrase, catalytic core, phage; KEGG: glo:Glov_1428 integrase family protein; integrase family protein	complement(3595358..3596602)	Alicycliphilus denitrificans K601	10484514
YP_004389301.1	CDS	Alide2_3455	NC_015422.1	3596919	3597695	R	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_1238 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU	complement(3596919..3597695)	Alicycliphilus denitrificans K601	10484515
YP_004389302.1	CDS	Alide2_3456	NC_015422.1	3597692	3598312	R	KEGG: dia:Dtpsy_1237 ribonuclease HII; PFAM: Ribonuclease HII/HIII; ribonuclease H	complement(3597692..3598312)	Alicycliphilus denitrificans K601	10484516
YP_004389303.1	CDS	Alide2_3457	NC_015422.1	3598287	3599441	R	KEGG: dia:Dtpsy_1236 lipid-A-disaccharide synthase; manually curated; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19; HAMAP: Glycosyl transferase, family 19; lipid-A-disaccharide synthase	complement(3598287..3599441)	Alicycliphilus denitrificans K601	10484517
YP_004389304.1	CDS	Alide2_3458	NC_015422.1	3599453	3600241	R	PFAM: Bacterial transferase hexapeptide repeat; TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: ajs:Ajs_2573 UDP-N-acetylglucosamine acyltransferase; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	complement(3599453..3600241)	Alicycliphilus denitrificans K601	10484518
YP_004389305.1	CDS	Alide2_3459	NC_015422.1	3600267	3600707	R	KEGG: aav:Aave_1834 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; 3-hydroxyacyl-ACP dehydratase	complement(3600267..3600707)	Alicycliphilus denitrificans K601	10484519
YP_004389306.1	CDS	Alide2_3460	NC_015422.1	3600704	3601702	R	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: dia:Dtpsy_1233 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase	complement(3600704..3601702)	Alicycliphilus denitrificans K601	10484520
YP_004389307.1	CDS	Alide2_3461	NC_015422.1	3601731	3602255	R	KEGG: ajs:Ajs_2576 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SMART: Outer membrane chaperone Skp (OmpH); outer membrane chaperone	complement(3601731..3602255)	Alicycliphilus denitrificans K601	10484521
YP_004389308.1	CDS	Alide2_3462	NC_015422.1	3602255	3604552	R	KEGG: dia:Dtpsy_1231 outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; outer membrane protein assembly complex, YaeT protein	complement(3602255..3604552)	Alicycliphilus denitrificans K601	10484522
YP_004389309.1	CDS	Alide2_3463	NC_015422.1	3604598	3605959	R	TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; PDZ/DHR/GLGF; KEGG: ajs:Ajs_2578 peptidase RseP; SMART: PDZ/DHR/GLGF; membrane-associated zinc metalloprotease	complement(3604598..3605959)	Alicycliphilus denitrificans K601	10484523
YP_004389310.1	CDS	Alide2_3464	NC_015422.1	3606062	3607237	R	TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: dia:Dtpsy_1229 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase	complement(3606062..3607237)	Alicycliphilus denitrificans K601	10484524
YP_004389311.1	CDS	Alide2_3465	NC_015422.1	3607241	3608086	R	PFAM: Phosphatidate cytidylyltransferase; KEGG: dia:Dtpsy_1228 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase	complement(3607241..3608086)	Alicycliphilus denitrificans K601	10484525
YP_004389312.1	CDS	Alide2_3466	NC_015422.1	3608125	3608862	R	TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: dia:Dtpsy_1227 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; UDP diphosphate synthase	complement(3608125..3608862)	Alicycliphilus denitrificans K601	10484526
YP_004389313.1	CDS	Alide2_3467	NC_015422.1	3608874	3609434	R	KEGG: dia:Dtpsy_1226 ribosome recycling factor; TIGRFAM: Ribosome recycling factor; PFAM: Ribosome recycling factor; ribosome recycling factor	complement(3608874..3609434)	Alicycliphilus denitrificans K601	10484527
YP_004389314.1	CDS	Alide2_3468	NC_015422.1	3609484	3610206	R	KEGG: dia:Dtpsy_1225 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase; uridylate kinase	complement(3609484..3610206)	Alicycliphilus denitrificans K601	10484528
YP_004389315.1	CDS	Alide2_3469	NC_015422.1	3610260	3611156	R	KEGG: dia:Dtpsy_1224 elongation factor Ts; TIGRFAM: Translation elongation factor EFTs/EF1B; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; translation elongation factor Ts	complement(3610260..3611156)	Alicycliphilus denitrificans K601	10484529
YP_004389316.1	CDS	Alide2_3470	NC_015422.1	3611271	3612023	R	KEGG: ajs:Ajs_2585 30S ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; 30S ribosomal protein S2	complement(3611271..3612023)	Alicycliphilus denitrificans K601	10484530
YP_004389317.1	CDS	Alide2_3471	NC_015422.1	3612242	3613588	D	PFAM: Amidase; KEGG: ajs:Ajs_2586 amidase; amidase	3612242..3613588	Alicycliphilus denitrificans K601	10484531
YP_004389318.1	CDS	Alide2_3472	NC_015422.1	3613643	3614884	D	KEGG: ajs:Ajs_2587 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase	3613643..3614884	Alicycliphilus denitrificans K601	10484532
YP_004389319.1	CDS	Alide2_3474	NC_015422.1	3616467	3617300	D	KEGG: vap:Vapar_0122 hypothetical protein; hypothetical protein	3616467..3617300	Alicycliphilus denitrificans K601	10484534
YP_004389320.1	CDS	Alide2_3475	NC_015422.1	3617282	3617965	R	KEGG: dia:Dtpsy_1218 hypothetical protein; hypothetical protein	complement(3617282..3617965)	Alicycliphilus denitrificans K601	10484535
YP_004389321.1	CDS	Alide2_3476	NC_015422.1	3618129	3619112	R	KEGG: dia:Dtpsy_1217 mammalian cell entry related domain protein; mammalian cell entry related domain-containing protein	complement(3618129..3619112)	Alicycliphilus denitrificans K601	10484536
YP_004389322.1	CDS	Alide2_3477	NC_015422.1	3619134	3619970	R	PFAM: Domain of unknown function DUF140; KEGG: dia:Dtpsy_1216 protein of unknown function DUF140; hypothetical protein	complement(3619134..3619970)	Alicycliphilus denitrificans K601	10484537
YP_004389323.1	CDS	Alide2_3478	NC_015422.1	3620050	3620508	R	KEGG: dia:Dtpsy_1215 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	complement(3620050..3620508)	Alicycliphilus denitrificans K601	10484538
YP_004389324.1	CDS	Alide2_3479	NC_015422.1	3620549	3622564	D	TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: ajs:Ajs_2594 heavy metal translocating P-type ATPase; PFAM: ATPase, P-type, ATPase-associated domain; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase	3620549..3622564	Alicycliphilus denitrificans K601	10484539
YP_004389325.1	CDS	Alide2_3480	NC_015422.1	3622711	3623337	D	KEGG: dia:Dtpsy_1212 protein of unknown function DUF161; manually curated; PFAM: Protein of unknown function DUF161; hypothetical protein	3622711..3623337	Alicycliphilus denitrificans K601	10484540
YP_004389326.1	CDS	Alide2_3481	NC_015422.1	3623355	3623702	D	KEGG: dia:Dtpsy_1211 hypothetical protein; hypothetical protein	3623355..3623702	Alicycliphilus denitrificans K601	10484541
YP_004389327.1	CDS	Alide2_3482	NC_015422.1	3623803	3624288	D	PFAM: Blue (type 1) copper domain; KEGG: ajs:Ajs_2601 blue (type1) copper domain-containing protein; blue (type 1) copper domain-containing protein	3623803..3624288	Alicycliphilus denitrificans K601	10484542
YP_004389328.1	CDS	Alide2_3483	NC_015422.1	3624315	3624794	D	PFAM: Protein of unknown function DUF411; KEGG: dia:Dtpsy_1206 protein of unknown function DUF411; hypothetical protein	3624315..3624794	Alicycliphilus denitrificans K601	10484543
YP_004389329.1	CDS	Alide2_3484	NC_015422.1	3624833	3625846	D	PFAM: Peptidase S58, DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA; peptidase S58 DmpA	3624833..3625846	Alicycliphilus denitrificans K601	10484544
YP_004389330.1	CDS	Alide2_3485	NC_015422.1	3625853	3627184	D	KEGG: ajs:Ajs_2606 TRAP transporter solute receptor TAXI family protein; TRAP transporter solute receptor TAXI family protein	3625853..3627184	Alicycliphilus denitrificans K601	10484545
YP_004389331.1	CDS	Alide2_3486	NC_015422.1	3627188	3628849	R	TIGRFAM: ABC transporter ATP-binding protein, ChvD; PFAM: ABC transporter-like; KEGG: dia:Dtpsy_1200 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; ATP-binding cassette protein, ChvD family	complement(3627188..3628849)	Alicycliphilus denitrificans K601	10484546
YP_004389332.1	CDS	Alide2_3487	NC_015422.1	3629107	3630813	D	KEGG: ajs:Ajs_2609 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein	3629107..3630813	Alicycliphilus denitrificans K601	10484547
YP_004389333.1	CDS	Alide2_3488	NC_015422.1	3630914	3632764	D	KEGG: ajs:Ajs_2610 peptidase M14, carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; peptidase M14 carboxypeptidase A	3630914..3632764	Alicycliphilus denitrificans K601	10484548
YP_004389334.1	CDS	Alide2_3489	NC_015422.1	3633028	3633630	D	TIGRFAM: PEP-CTERM anchor; PFAM: PEP-CTERM bacterial; PEP motif putative anchor domain-containing protein	3633028..3633630	Alicycliphilus denitrificans K601	10484550
YP_004389335.1	CDS	Alide2_3490	NC_015422.1	3633786	3634082	D	KEGG: ajs:Ajs_2619 hypothetical protein; hypothetical protein	3633786..3634082	Alicycliphilus denitrificans K601	10484551
YP_004389336.1	CDS	Alide2_3491	NC_015422.1	3634100	3634213	R	hypothetical protein	complement(3634100..3634213)	Alicycliphilus denitrificans K601	10484552
YP_004389337.1	CDS	Alide2_3492	NC_015422.1	3634246	3634473	R	KEGG: dia:Dtpsy_2403 hypothetical protein; hypothetical protein	complement(3634246..3634473)	Alicycliphilus denitrificans K601	10484553
YP_004389338.1	CDS	Alide2_3494	NC_015422.1	3635053	3635445	D	PFAM: LrgB-like protein; KEGG: dia:Dtpsy_2405 LrgB family protein; LrgB family protein	3635053..3635445	Alicycliphilus denitrificans K601	10484555
YP_004389339.1	CDS	Alide2_3495	NC_015422.1	3635440	3636390	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_2978 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(3635440..3636390)	Alicycliphilus denitrificans K601	10484556
YP_004389340.1	CDS	Alide2_3496	NC_015422.1	3636562	3637758	D	KEGG: dia:Dtpsy_2407 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; glutaryl-CoA dehydrogenase	3636562..3637758	Alicycliphilus denitrificans K601	10484557
YP_004389341.1	CDS	Alide2_3497	NC_015422.1	3637818	3639059	D	KEGG: dia:Dtpsy_2408 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	3637818..3639059	Alicycliphilus denitrificans K601	10484558
YP_004389342.1	CDS	Alide2_3498	NC_015422.1	3639128	3640096	D	KEGG: ajs:Ajs_2981 hypothetical protein; hypothetical protein	3639128..3640096	Alicycliphilus denitrificans K601	10484559
YP_004389343.1	CDS	Alide2_3499	NC_015422.1	3640299	3640823	D	KEGG: dia:Dtpsy_2411 hypothetical protein; hypothetical protein	3640299..3640823	Alicycliphilus denitrificans K601	10484560
YP_004389344.1	CDS	Alide2_3500	NC_015422.1	3640858	3641490	D	KEGG: dia:Dtpsy_2412 hypothetical protein; hypothetical protein	3640858..3641490	Alicycliphilus denitrificans K601	10484561
YP_004389345.1	CDS	Alide2_3501	NC_015422.1	3641478	3642419	R	PFAM: Regulator of K+ conductance, N-terminal; KEGG: ajs:Ajs_2986 NAD-dependent epimerase/dehydratase; TrkA-N domain-containing protein	complement(3641478..3642419)	Alicycliphilus denitrificans K601	10484562
YP_004389346.1	CDS	Alide2_3502	NC_015422.1	3642488	3643549	D	KEGG: dia:Dtpsy_2414 CDP-6-deoxy-delta-3,4-glucoseen reductase; PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase, FAD-binding domain; Ferredoxin; ferredoxin--NAD(+) reductase	3642488..3643549	Alicycliphilus denitrificans K601	10484563
YP_004389347.1	CDS	Alide2_3503	NC_015422.1	3643556	3644704	R	PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; KEGG: hch:HCH_06702 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta	complement(3643556..3644704)	Alicycliphilus denitrificans K601	10484564
YP_004389348.1	CDS	Alide2_3504	NC_015422.1	3644821	3645738	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_B5443 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator	3644821..3645738	Alicycliphilus denitrificans K601	10484565
YP_004389349.1	CDS	Alide2_3505	NC_015422.1	3645949	3646959	D	PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase; Uroporphyrinogen decarboxylase	3645949..3646959	Alicycliphilus denitrificans K601	10484566
YP_004389350.1	CDS	Alide2_3506	NC_015422.1	3647012	3647995	D	KEGG: reu:Reut_B5440 hypothetical protein; hypothetical protein	3647012..3647995	Alicycliphilus denitrificans K601	10484567
YP_004389351.1	CDS	Alide2_3507	NC_015422.1	3648045	3649016	D	KEGG: ajs:Ajs_2989 hypothetical protein; hypothetical protein	3648045..3649016	Alicycliphilus denitrificans K601	10484568
YP_004389352.1	CDS	Alide2_3508	NC_015422.1	3649062	3649928	R	PFAM: Uncharacterised protein family UPF0249/HpnK; KEGG: vap:Vapar_5574 YdjC family protein; YdjC family protein	complement(3649062..3649928)	Alicycliphilus denitrificans K601	10484569
YP_004389353.1	CDS	Alide2_3509	NC_015422.1	3649947	3650357	D	PFAM: GtrA-like protein; KEGG: axy:AXYL_00714 GtrA-like protein; GtrA family protein	3649947..3650357	Alicycliphilus denitrificans K601	10484570
YP_004389354.1	CDS	Alide2_3510	NC_015422.1	3650305	3651882	R	PFAM: Glycosyl transferase, family 39; KEGG: dac:Daci_2190 glycosyl transferase family protein; glycosyl transferase family 39	complement(3650305..3651882)	Alicycliphilus denitrificans K601	10484571
YP_004389355.1	CDS	Alide2_3511	NC_015422.1	3651879	3652859	R	PFAM: Glycosyl transferase, family 2; KEGG: vap:Vapar_5572 glycosyl transferase family 2; family 2 glycosyl transferase	complement(3651879..3652859)	Alicycliphilus denitrificans K601	10484572
YP_004389356.1	CDS	Alide2_3512	NC_015422.1	3653055	3653573	R	TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: ajs:Ajs_2990 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	complement(3653055..3653573)	Alicycliphilus denitrificans K601	10484573
YP_004389357.1	CDS	Alide2_3513	NC_015422.1	3653570	3655138	R	TIGRFAM: Poly(A) polymerase, PcnB; KEGG: dia:Dtpsy_2418 poly(A) polymerase; PFAM: Poly A polymerase, head domain; poly(A) polymerase	complement(3653570..3655138)	Alicycliphilus denitrificans K601	10484574
YP_004389358.1	CDS	Alide2_3514	NC_015422.1	3655135	3655809	R	TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2419 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase	complement(3655135..3655809)	Alicycliphilus denitrificans K601	10484575
YP_004389359.1	CDS	Alide2_3515	NC_015422.1	3655806	3656513	R	KEGG: aav:Aave_1971 chromosomal replication initiator, DnaA; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); DnaA regulatory inactivator Hda	complement(3655806..3656513)	Alicycliphilus denitrificans K601	10484576
YP_004389360.1	CDS	Alide2_3516	NC_015422.1	3656836	3658788	D	TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: aci:ACIAD0929 gamma-glutamyltranspeptidase precursor; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase	3656836..3658788	Alicycliphilus denitrificans K601	10484577
YP_004389361.1	CDS	Alide2_3517	NC_015422.1	3658945	3659985	D	TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; KEGG: ajs:Ajs_2994 phosphoribosylaminoimidazole synthetase; PFAM: AIR synthase-related protein, C-terminal; AIR synthase-related protein; phosphoribosylformylglycinamidine cyclo-ligase	3658945..3659985	Alicycliphilus denitrificans K601	10484578
YP_004389362.1	CDS	Alide2_3518	NC_015422.1	3660010	3661095	D	PFAM: Uncharacterised protein family UPF0118; KEGG: dia:Dtpsy_2422 hypothetical protein; hypothetical protein	3660010..3661095	Alicycliphilus denitrificans K601	10484579
YP_004389363.1	CDS	Alide2_3519	NC_015422.1	3661327	3661722	D	PFAM: UspA; KEGG: dia:Dtpsy_2423 UspA domain protein; UspA domain-containing protein	3661327..3661722	Alicycliphilus denitrificans K601	10484580
YP_004389364.1	CDS	Alide2_3520	NC_015422.1	3661724	3662572	R	KEGG: ajs:Ajs_2998 hypothetical protein; hypothetical protein	complement(3661724..3662572)	Alicycliphilus denitrificans K601	10484581
YP_004389365.1	CDS	Alide2_3521	NC_015422.1	3662589	3664154	R	KEGG: ajs:Ajs_2999 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; integral membrane protein MviN	complement(3662589..3664154)	Alicycliphilus denitrificans K601	10484582
YP_004389366.1	CDS	Alide2_3522	NC_015422.1	3664259	3664558	D	KEGG: dia:Dtpsy_2427 30S ribosomal protein S20; TIGRFAM: Ribosomal protein S20; PFAM: Ribosomal protein S20; 30S ribosomal protein S20	3664259..3664558	Alicycliphilus denitrificans K601	10484583
YP_004389367.1	CDS	Alide2_3523	NC_015422.1	3664773	3665453	R	KEGG: vha:VIBHAR_05618 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF45; hypothetical protein	complement(3664773..3665453)	Alicycliphilus denitrificans K601	10484584
YP_004389368.1	CDS	Alide2_3524	NC_015422.1	3665474	3665746	R	hypothetical protein	complement(3665474..3665746)	Alicycliphilus denitrificans K601	10484585
YP_004389369.1	CDS	Alide2_3525	NC_015422.1	3665756	3667270	R	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	complement(3665756..3667270)	Alicycliphilus denitrificans K601	10484586
YP_004389370.1	CDS	Alide2_3526	NC_015422.1	3667353	3667685	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(3667353..3667685)	Alicycliphilus denitrificans K601	10484587
YP_004389371.1	CDS	Alide2_3527	NC_015422.1	3667682	3668110	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(3667682..3668110)	Alicycliphilus denitrificans K601	10484588
YP_004389372.1	CDS	Alide2_3528	NC_015422.1	3668325	3669239	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(3668325..3669239)	Alicycliphilus denitrificans K601	10484589
YP_004389373.1	CDS	Alide2_3529	NC_015422.1	3669236	3669559	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(3669236..3669559)	Alicycliphilus denitrificans K601	10484590
YP_004389374.1	CDS	Alide2_3531	NC_015422.1	3669924	3670997	R	manually curated; KEGG: pol:Bpro_4383 putative porin precursor transmembrane protein; putative porin transmembrane protein	complement(3669924..3670997)	Alicycliphilus denitrificans K601	10484592
YP_004389375.1	CDS	Alide2_3532	NC_015422.1	3672034	3672837	R	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	complement(3672034..3672837)	Alicycliphilus denitrificans K601	10484593
YP_004389376.1	CDS	Alide2_3533	NC_015422.1	3672827	3674353	R	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	complement(3672827..3674353)	Alicycliphilus denitrificans K601	10484594
YP_004389377.1	CDS	Alide2_3534	NC_015422.1	3674491	3674811	R	hypothetical protein	complement(3674491..3674811)	Alicycliphilus denitrificans K601	10484595
YP_004389378.1	CDS	Alide2_3535	NC_015422.1	3674802	3675344	R	hypothetical protein	complement(3674802..3675344)	Alicycliphilus denitrificans K601	10484596
YP_004389379.1	CDS	Alide2_3536	NC_015422.1	3675319	3675807	R	hypothetical protein	complement(3675319..3675807)	Alicycliphilus denitrificans K601	10484597
YP_004389380.1	CDS	Alide2_3537	NC_015422.1	3676078	3676518	D	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: vap:Vapar_5710 hypothetical protein; Dimethylmenaquinone methyltransferase	3676078..3676518	Alicycliphilus denitrificans K601	10484598
YP_004389381.1	CDS	Alide2_3538	NC_015422.1	3676562	3676876	R	PFAM: Protein of unknown function DUF3579; KEGG: dia:Dtpsy_2428 hypothetical protein; hypothetical protein	complement(3676562..3676876)	Alicycliphilus denitrificans K601	10484599
YP_004389382.1	CDS	Alide2_3539	NC_015422.1	3677114	3678310	D	TIGRFAM: Acetylornithine/succinylornithine aminotransferase; KEGG: dia:Dtpsy_2429 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; acetylornithine and succinylornithine aminotransferase	3677114..3678310	Alicycliphilus denitrificans K601	10484600
YP_004389383.1	CDS	Alide2_3540	NC_015422.1	3678327	3679247	D	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: dia:Dtpsy_2430 ornithine carbamoyltransferase; Ornithine carbamoyltransferase	3678327..3679247	Alicycliphilus denitrificans K601	10484601
YP_004389384.1	CDS	Alide2_3541	NC_015422.1	3679260	3679793	R	KEGG: bmj:BMULJ_04805 hypothetical protein; hypothetical protein	complement(3679260..3679793)	Alicycliphilus denitrificans K601	10484602
YP_004389385.1	CDS	Alide2_3542	NC_015422.1	3679800	3680009	R	PFAM: Protein of unknown function DUF2945; KEGG: pde:Pden_4005 hypothetical protein; hypothetical protein	complement(3679800..3680009)	Alicycliphilus denitrificans K601	10484603
YP_004389386.1	CDS	Alide2_3543	NC_015422.1	3680109	3680456	D	PFAM: Uncharacterised protein family UPF0153; KEGG: ajs:Ajs_3004 hypothetical protein; hypothetical protein	3680109..3680456	Alicycliphilus denitrificans K601	10484604
YP_004389387.1	CDS	Alide2_3544	NC_015422.1	3680516	3680761	R	KEGG: dac:Daci_2177 hypothetical protein; hypothetical protein	complement(3680516..3680761)	Alicycliphilus denitrificans K601	10484605
YP_004389388.1	CDS	Alide2_3545	NC_015422.1	3680763	3682703	R	KEGG: dia:Dtpsy_2434 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: Ferrous iron transport protein B, N-terminal; GTP-binding protein, HSR1-related; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; ferrous iron transport protein B	complement(3680763..3682703)	Alicycliphilus denitrificans K601	10484606
YP_004389389.1	CDS	Alide2_3546	NC_015422.1	3682700	3682999	R	KEGG: dia:Dtpsy_2435 FeoA family protein; PFAM: Ferrous iron transporter, FeoA subunit; SMART: Ferrous iron transporter, FeoA subunit; FeoA family protein	complement(3682700..3682999)	Alicycliphilus denitrificans K601	10484607
YP_004389390.1	CDS	Alide2_3547	NC_015422.1	3683119	3683442	D	PFAM: Uncharacterised protein family UPF0153; KEGG: dia:Dtpsy_2436 protein of unknown function UPF0153; hypothetical protein	3683119..3683442	Alicycliphilus denitrificans K601	10484608
YP_004389391.1	CDS	Alide2_3548	NC_015422.1	3683444	3684091	D	TIGRFAM: Arylformamidase; KEGG: dia:Dtpsy_2438 arylformamidase; PFAM: Putative cyclase; arylformamidase	3683444..3684091	Alicycliphilus denitrificans K601	10484609
YP_004389392.1	CDS	Alide2_3549	NC_015422.1	3684274	3685272	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_03752 LysR family regulatory helix-turn-helix protein 123; LysR family transcriptional regulator	3684274..3685272	Alicycliphilus denitrificans K601	10484610
YP_004389393.1	CDS	Alide2_3550	NC_015422.1	3685269	3686243	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV1563 ABC transporter, permease protein; ABC transporter permease	3685269..3686243	Alicycliphilus denitrificans K601	10484611
YP_004389394.1	CDS	Alide2_3551	NC_015422.1	3686240	3687139	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: axy:AXYL_03755 binding-protein-dependent transport system inner membrane component family protein 46; ABC transporter permease	3686240..3687139	Alicycliphilus denitrificans K601	10484612
YP_004389395.1	CDS	Alide2_3552	NC_015422.1	3687136	3688110	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: rpf:Rpic12D_1762 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase	3687136..3688110	Alicycliphilus denitrificans K601	10484613
YP_004389396.1	CDS	Alide2_3553	NC_015422.1	3688107	3689102	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: axy:AXYL_03757 oligopeptide/dipeptide abc transporter, ATP-binding protein, C-terminal domain-containing protein 6; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; peptide ABC transporter ATPase	3688107..3689102	Alicycliphilus denitrificans K601	10484614
YP_004389397.1	CDS	Alide2_3554	NC_015422.1	3689226	3690794	D	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: bav:BAV1559 ABC transporter, substrate binding protein; ABC transporter substrate-binding protein	3689226..3690794	Alicycliphilus denitrificans K601	10484615
YP_004389398.1	CDS	Alide2_3555	NC_015422.1	3690794	3692101	D	KEGG: axy:AXYL_03759 BAAT/acyl-CoA thioester hydrolase family protein 1; PFAM: BAAT/Acyl-CoA thioester hydrolase C-terminal; Acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; Palmitoyl-CoA hydrolase	3690794..3692101	Alicycliphilus denitrificans K601	10484616
YP_004389399.1	CDS	Alide2_3556	NC_015422.1	3692107	3693159	R	PFAM: Adenosine/AMP deaminase; TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: dia:Dtpsy_2442 adenosine deaminase; adenosine deaminase	complement(3692107..3693159)	Alicycliphilus denitrificans K601	10484617
YP_004389400.1	CDS	Alide2_3557	NC_015422.1	3693252	3693605	R	PFAM: Domain of unknown function DUF861, cupin-3; KEGG: axy:AXYL_05003 hypothetical protein; hypothetical protein	complement(3693252..3693605)	Alicycliphilus denitrificans K601	10484618
YP_004389401.1	CDS	Alide2_3558	NC_015422.1	3693644	3694438	R	KEGG: rso:RSc3411 transcription regulator protein; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(3693644..3694438)	Alicycliphilus denitrificans K601	10484619
YP_004389402.1	CDS	Alide2_3559	NC_015422.1	3694642	3695412	D	KEGG: rsl:RPSI07_0031 putative amino acid-binding periplasmic (Pbp) ABC transporter protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	3694642..3695412	Alicycliphilus denitrificans K601	10484620
YP_004389403.1	CDS	Alide2_3560	NC_015422.1	3695439	3696104	D	KEGG: rso:RSc3409 amino-acid transmembrane ABC transporter protein; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	3695439..3696104	Alicycliphilus denitrificans K601	10484621
YP_004389404.1	CDS	Alide2_3561	NC_015422.1	3696101	3696847	D	PFAM: ABC transporter-like; KEGG: rso:RSc3408 ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	3696101..3696847	Alicycliphilus denitrificans K601	10484622
YP_004389405.1	CDS	Alide2_3562	NC_015422.1	3696844	3698142	D	PFAM: FAD dependent oxidoreductase; KEGG: xtr:100491525 hypothetical protein LOC100491525; FAD dependent oxidoreductase	3696844..3698142	Alicycliphilus denitrificans K601	10484623
YP_004389406.1	CDS	Alide2_3563	NC_015422.1	3698193	3699359	R	PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2443 basic membrane lipoprotein; basic membrane lipoprotein	complement(3698193..3699359)	Alicycliphilus denitrificans K601	10484624
YP_004389407.1	CDS	Alide2_3564	NC_015422.1	3699400	3700545	R	PFAM: Basic membrane lipoprotein; KEGG: dia:Dtpsy_2444 basic membrane lipoprotein; basic membrane lipoprotein	complement(3699400..3700545)	Alicycliphilus denitrificans K601	10484625
YP_004389408.1	CDS	Alide2_3565	NC_015422.1	3700568	3701488	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2445 inner-membrane translocator; ABC transporter permease	complement(3700568..3701488)	Alicycliphilus denitrificans K601	10484626
YP_004389409.1	CDS	Alide2_3566	NC_015422.1	3701488	3702561	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2446 inner-membrane translocator; ABC transporter permease	complement(3701488..3702561)	Alicycliphilus denitrificans K601	10484627
YP_004389410.1	CDS	Alide2_3567	NC_015422.1	3702548	3704137	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2447 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3702548..3704137)	Alicycliphilus denitrificans K601	10484628
YP_004389411.1	CDS	Alide2_3569	NC_015422.1	3704656	3705786	D	KEGG: pol:Bpro_2745 putative transposase; putative transposase	3704656..3705786	Alicycliphilus denitrificans K601	10484629
YP_004389412.1	CDS	Alide2_3570	NC_015422.1	3705752	3706045	D	KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein	3705752..3706045	Alicycliphilus denitrificans K601	10484630
YP_004389413.1	CDS	Alide2_3571	NC_015422.1	3708138	3708761	R	KEGG: dia:Dtpsy_2451 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator	complement(3708138..3708761)	Alicycliphilus denitrificans K601	10484631
YP_004389414.1	CDS	Alide2_3572	NC_015422.1	3708973	3710031	D	PFAM: Porin, Gram-negative type; KEGG: dia:Dtpsy_2452 porin gram-negative type; porin	3708973..3710031	Alicycliphilus denitrificans K601	10484632
YP_004389415.1	CDS	Alide2_3573	NC_015422.1	3710141	3710578	D	PFAM: Histidine triad (HIT) protein; KEGG: dia:Dtpsy_2454 histidine triad (HIT) protein; histidine triad (HIT) protein	3710141..3710578	Alicycliphilus denitrificans K601	10484633
YP_004389416.1	CDS	Alide2_3574	NC_015422.1	3710575	3711522	R	KEGG: dia:Dtpsy_2455 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; Glyoxylate reductase	complement(3710575..3711522)	Alicycliphilus denitrificans K601	10484634
YP_004389417.1	CDS	Alide2_3575	NC_015422.1	3711704	3712630	D	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_3110 Bcr/CflA subfamily drug resistance transporter; major facilitator superfamily protein	3711704..3712630	Alicycliphilus denitrificans K601	10484635
YP_004389418.1	CDS	Alide2_3576	NC_015422.1	3712620	3713582	D	PFAM: tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: dia:Dtpsy_2457 tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA dimethylallyltransferase	3712620..3713582	Alicycliphilus denitrificans K601	10484636
YP_004389419.1	CDS	Alide2_3577	NC_015422.1	3713588	3714250	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2458 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	3713588..3714250	Alicycliphilus denitrificans K601	10484637
YP_004389420.1	CDS	Alide2_3578	NC_015422.1	3714258	3714686	R	PFAM: Heat shock protein Hsp20; KEGG: dia:Dtpsy_2459 heat shock protein HSP20; heat shock protein Hsp20	complement(3714258..3714686)	Alicycliphilus denitrificans K601	10484638
YP_004389421.1	CDS	Alide2_3579	NC_015422.1	3714819	3717458	D	PFAM: Domain of unknown function DUF214, ABC transporter permease; KEGG: dia:Dtpsy_2460 protein of unknown function DUF214; hypothetical protein	3714819..3717458	Alicycliphilus denitrificans K601	10484639
YP_004389422.1	CDS	Alide2_3580	NC_015422.1	3717477	3718547	D	KEGG: ajs:Ajs_3115 pyridoxal-5'-phosphate-dependent enzyme, beta subunit; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Cysteine synthase	3717477..3718547	Alicycliphilus denitrificans K601	10484640
YP_004389423.1	CDS	Alide2_3581	NC_015422.1	3718544	3719638	D	KEGG: ajs:Ajs_3116 secreted hydrolase-like protein; hypothetical protein	3718544..3719638	Alicycliphilus denitrificans K601	10484641
YP_004389424.1	CDS	Alide2_3582	NC_015422.1	3719696	3720697	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2463 inner-membrane translocator; ABC transporter permease	complement(3719696..3720697)	Alicycliphilus denitrificans K601	10484642
YP_004389425.1	CDS	Alide2_3583	NC_015422.1	3720716	3721600	R	KEGG: dia:Dtpsy_2464 inner-membrane translocator; manually curated; PFAM: ABC transporter permease; ABC transporter permease	complement(3720716..3721600)	Alicycliphilus denitrificans K601	10484643
YP_004389426.1	CDS	Alide2_3584	NC_015422.1	3721647	3722846	R	PFAM: Extracellular ligand-binding receptor; KEGG: ajs:Ajs_3119 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(3721647..3722846)	Alicycliphilus denitrificans K601	10484644
YP_004389427.1	CDS	Alide2_3585	NC_015422.1	3722918	3724120	R	PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_2466 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(3722918..3724120)	Alicycliphilus denitrificans K601	10484645
YP_004389428.1	CDS	Alide2_3586	NC_015422.1	3724170	3724880	R	KEGG: ajs:Ajs_3121 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(3724170..3724880)	Alicycliphilus denitrificans K601	10484646
YP_004389429.1	CDS	Alide2_3587	NC_015422.1	3724882	3725652	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2468 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3724882..3725652)	Alicycliphilus denitrificans K601	10484647
YP_004389430.1	CDS	Alide2_3588	NC_015422.1	3725815	3726597	R	PFAM: Transport-associated OB, type 1; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_2469 putative transcriptional regulator, ModE family; putative ModE family transcriptional regulator	complement(3725815..3726597)	Alicycliphilus denitrificans K601	10484648
YP_004389431.1	CDS	Alide2_3589	NC_015422.1	3726664	3727428	D	KEGG: dia:Dtpsy_2470 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: Molybdenum ABC transporter, periplasmic binding protein; PFAM: Bacterial extracellular solute-binding, family 1; molybdenum ABC transporter substrate-binding protein	3726664..3727428	Alicycliphilus denitrificans K601	10484649
YP_004389432.1	CDS	Alide2_3590	NC_015422.1	3727522	3728205	D	KEGG: ajs:Ajs_3125 molybdate ABC transporter, inner membrane subunit; TIGRFAM: Molybdate ABC transporter, permease protein; PFAM: Binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit	3727522..3728205	Alicycliphilus denitrificans K601	10484650
YP_004389433.1	CDS	Alide2_3591	NC_015422.1	3728202	3729278	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Molybdate ABC transporter, ATP-binding protein; KEGG: ajs:Ajs_3126 molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Transport-associated OB, type 1; molybdate ABC transporter ATPase	3728202..3729278	Alicycliphilus denitrificans K601	10484651
YP_004389434.1	CDS	Alide2_3592	NC_015422.1	3729393	3730322	D	KEGG: pna:Pnap_0462 hypothetical protein; hypothetical protein	3729393..3730322	Alicycliphilus denitrificans K601	10484652
YP_004389435.1	CDS	Alide2_3593	NC_015422.1	3730343	3731170	R	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: ajs:Ajs_3127 extracellular solute-binding protein; family 1 extracellular solute-binding protein	complement(3730343..3731170)	Alicycliphilus denitrificans K601	10484653
YP_004389436.1	CDS	Alide2_3594	NC_015422.1	3731167	3731943	R	PFAM: ABC transporter-like; KEGG: ajs:Ajs_3128 ABC transporter related; SMART: ATPase, AAA+ type, core; phosphonate-transporting ATPase	complement(3731167..3731943)	Alicycliphilus denitrificans K601	10484654
YP_004389437.1	CDS	Alide2_3595	NC_015422.1	3731940	3732674	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3129 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(3731940..3732674)	Alicycliphilus denitrificans K601	10484655
YP_004389438.1	CDS	Alide2_3596	NC_015422.1	3732725	3733864	D	PFAM: HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3130 molybdate metabolism transcriptional regulator; LysR family transcriptional regulator	3732725..3733864	Alicycliphilus denitrificans K601	10484656
YP_004389439.1	CDS	Alide2_3597	NC_015422.1	3733861	3735423	D	KEGG: maq:Maqu_3283 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase	3733861..3735423	Alicycliphilus denitrificans K601	10484657
YP_004389440.1	CDS	Alide2_3598	NC_015422.1	3735480	3737126	R	KEGG: dia:Dtpsy_2483 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	complement(3735480..3737126)	Alicycliphilus denitrificans K601	10484658
YP_004389441.1	CDS	Alide2_3599	NC_015422.1	3737466	3739391	D	TIGRFAM: DNA primase, DnaG; KEGG: ajs:Ajs_3137 DNA primase; DNA primase	3737466..3739391	Alicycliphilus denitrificans K601	10484659
YP_004389442.1	CDS	Alide2_3600	NC_015422.1	3739650	3742058	D	KEGG: dia:Dtpsy_2485 RNA polymerase, sigma 70 subunit, RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential domain; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma-710 subunit RpoD	3739650..3742058	Alicycliphilus denitrificans K601	10484660
YP_004389443.1	CDS	Alide2_3602	NC_015422.1	3742323	3743006	D	KEGG: neu:NE0447 hypothetical protein; manually curated; PFAM: Methyladenine glycosylase; methyladenine glycosylase	3742323..3743006	Alicycliphilus denitrificans K601	10484662
YP_004389444.1	CDS	Alide2_3603	NC_015422.1	3743053	3744003	D	TIGRFAM: Ketopantoate reductase ApbA/PanE; KEGG: ajs:Ajs_3139 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal; Ketopantoate reductase ApbA/PanE, C-terminal; 2-dehydropantoate 2-reductase	3743053..3744003	Alicycliphilus denitrificans K601	10484663
YP_004389445.1	CDS	Alide2_3604	NC_015422.1	3744077	3745078	R	KEGG: dia:Dtpsy_2488 hypothetical protein; hypothetical protein	complement(3744077..3745078)	Alicycliphilus denitrificans K601	10484664
YP_004389446.1	CDS	Alide2_3605	NC_015422.1	3745112	3746305	R	KEGG: ajs:Ajs_3142 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(3745112..3746305)	Alicycliphilus denitrificans K601	10484665
YP_004389447.1	CDS	Alide2_3606	NC_015422.1	3746336	3747265	R	KEGG: dia:Dtpsy_2490 pyruvate carboxyltransferase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase	complement(3746336..3747265)	Alicycliphilus denitrificans K601	10484666
YP_004389448.1	CDS	Alide2_3607	NC_015422.1	3747374	3748303	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ajs:Ajs_3144 LysR family transcriptional regulator; LysR family transcriptional regulator	3747374..3748303	Alicycliphilus denitrificans K601	10484667
YP_004389449.1	CDS	Alide2_3608	NC_015422.1	3748455	3748760	D	KEGG: dia:Dtpsy_2492 putative transcriptional regulator; putative transcriptional regulator	3748455..3748760	Alicycliphilus denitrificans K601	10484668
YP_004389450.1	CDS	Alide2_3609	NC_015422.1	3748876	3749235	D	KEGG: dia:Dtpsy_2493 peptidylprolyl isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; peptidylprolyl isomerase	3748876..3749235	Alicycliphilus denitrificans K601	10484669
YP_004389451.1	CDS	Alide2_3610	NC_015422.1	3749293	3750684	R	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: dia:Dtpsy_2494 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; 30S ribosomal protein S12 methylthiotransferase rimO	complement(3749293..3750684)	Alicycliphilus denitrificans K601	10484670
YP_004389452.1	CDS	Alide2_3611	NC_015422.1	3750722	3751261	R	KEGG: dia:Dtpsy_2495 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: Polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding, N-terminal; PHB accumulation regulatory; polyhydroxyalkonate synthesis repressor, PhaR	complement(3750722..3751261)	Alicycliphilus denitrificans K601	10484671
YP_004389453.1	CDS	Alide2_3612	NC_015422.1	3751454	3751762	R	KEGG: dia:Dtpsy_2389 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein	complement(3751454..3751762)	Alicycliphilus denitrificans K601	10484672
YP_004389454.1	CDS	Alide2_3613	NC_015422.1	3751827	3752042	R	KEGG: dia:Dtpsy_2387 hypothetical protein; hypothetical protein	complement(3751827..3752042)	Alicycliphilus denitrificans K601	10484673
YP_004389455.1	CDS	Alide2_3614	NC_015422.1	3752581	3754827	R	SMART: RelA/SpoT; TIGRFAM: RelA/SpoT protein; KEGG: ajs:Ajs_3149 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; (p)ppGpp synthetase I SpoT/RelA	complement(3752581..3754827)	Alicycliphilus denitrificans K601	10484675
YP_004389456.1	CDS	Alide2_3615	NC_015422.1	3754824	3755765	R	KEGG: ajs:Ajs_3150 alpha/beta hydrolase fold; manually curated; PFAM: Alpha/beta hydrolase fold-1; alpha/beta hydrolase fold protein	complement(3754824..3755765)	Alicycliphilus denitrificans K601	10484676
YP_004389457.1	CDS	Alide2_3616	NC_015422.1	3755835	3756617	D	TIGRFAM: 3-hydroxybutyrate dehydrogenase; KEGG: dia:Dtpsy_2498 3-hydroxybutyrate dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase	3755835..3756617	Alicycliphilus denitrificans K601	10484677
YP_004389458.1	CDS	Alide2_3617	NC_015422.1	3756672	3757400	R	PFAM: Protein of unknown function DUF541; KEGG: dia:Dtpsy_2499 protein of unknown function DUF541; hypothetical protein	complement(3756672..3757400)	Alicycliphilus denitrificans K601	10484678
YP_004389459.1	CDS	Alide2_3618	NC_015422.1	3757597	3758328	D	KEGG: dia:Dtpsy_2500 osmolarity response regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	3757597..3758328	Alicycliphilus denitrificans K601	10484679
YP_004389460.1	CDS	Alide2_3619	NC_015422.1	3758401	3759906	D	KEGG: dia:Dtpsy_2501 histidine kinase; PFAM: ATPase-like, ATP-binding domain; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; integral membrane sensor signal transduction histidine kinase	3758401..3759906	Alicycliphilus denitrificans K601	10484680
YP_004389461.1	CDS	Alide2_3620	NC_015422.1	3759979	3760458	R	KEGG: dia:Dtpsy_2502 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	complement(3759979..3760458)	Alicycliphilus denitrificans K601	10484681
YP_004389462.1	CDS	Alide2_3621	NC_015422.1	3760479	3761327	R	PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: dia:Dtpsy_2503 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	complement(3760479..3761327)	Alicycliphilus denitrificans K601	10484682
YP_004389463.1	CDS	Alide2_3622	NC_015422.1	3761406	3764897	D	TIGRFAM: Transcription-repair coupling factor; PFAM: Transcription factor CarD; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; Transcription-repair-coupling factor domain; KEGG: ajs:Ajs_3157 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; transcription-repair coupling factor	3761406..3764897	Alicycliphilus denitrificans K601	10484683
YP_004389464.1	CDS	Alide2_3623	NC_015422.1	3764904	3765584	D	KEGG: dia:Dtpsy_2505 hypothetical protein; hypothetical protein	3764904..3765584	Alicycliphilus denitrificans K601	10484684
YP_004389465.1	CDS	Alide2_3624	NC_015422.1	3765751	3767925	R	KEGG: ppw:PputW619_2172 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; Mannitol dehydrogenase, C-terminal; HAD-superfamily hydrolase	complement(3765751..3767925)	Alicycliphilus denitrificans K601	10484685
YP_004389466.1	CDS	Alide2_3625	NC_015422.1	3768267	3768986	D	TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: dia:Dtpsy_2506 phosphoserine phosphatase SerB; PFAM: Haloacid dehalogenase-like hydrolase; phosphoserine phosphatase SerB	3768267..3768986	Alicycliphilus denitrificans K601	10484686
YP_004389467.1	CDS	Alide2_3626	NC_015422.1	3769043	3769786	D	KEGG: ajs:Ajs_3314 LytR/AlgR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; SMART: Signal transduction response regulator, receiver domain; LytTr, DNA-binding domain; LytTR family two component transcriptional regulator	3769043..3769786	Alicycliphilus denitrificans K601	10484687
YP_004389468.1	CDS	Alide2_3627	NC_015422.1	3769886	3770704	R	PFAM: Zinc/iron permease; KEGG: dia:Dtpsy_2667 zinc/iron permease; zinc/iron permease	complement(3769886..3770704)	Alicycliphilus denitrificans K601	10484688
YP_004389469.1	CDS	Alide2_3628	NC_015422.1	3770815	3771699	R	KEGG: dia:Dtpsy_2668 carboxymethylenebutenolidase; PFAM: Dienelactone hydrolase; carboxymethylenebutenolidase	complement(3770815..3771699)	Alicycliphilus denitrificans K601	10484689
YP_004389470.1	CDS	Alide2_3629	NC_015422.1	3771785	3772549	R	PFAM: Crotonase, core; KEGG: bpt:Bpet4160 putative enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(3771785..3772549)	Alicycliphilus denitrificans K601	10484690
YP_004389471.1	CDS	Alide2_3630	NC_015422.1	3772573	3773766	R	KEGG: bpt:Bpet4161 acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(3772573..3773766)	Alicycliphilus denitrificans K601	10484691
YP_004389472.1	CDS	Alide2_3631	NC_015422.1	3773794	3774768	R	KEGG: bpt:Bpet4162 putative secreted protein; hypothetical protein	complement(3773794..3774768)	Alicycliphilus denitrificans K601	10484692
YP_004389473.1	CDS	Alide2_3632	NC_015422.1	3774903	3775898	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A3085 LysR family transcriptional regulator; LysR family transcriptional regulator	3774903..3775898	Alicycliphilus denitrificans K601	10484693
YP_004389474.1	CDS	Alide2_3633	NC_015422.1	3775906	3776430	R	PFAM: Carboxymuconolactone decarboxylase; KEGG: axy:AXYL_04995 alkylhydroperoxidase AhpD family core domain-containing protein 7; carboxymuconolactone decarboxylase	complement(3775906..3776430)	Alicycliphilus denitrificans K601	10484694
YP_004389475.1	CDS	Alide2_3634	NC_015422.1	3776450	3777418	R	KEGG: dac:Daci_0250 hypothetical protein; hypothetical protein	complement(3776450..3777418)	Alicycliphilus denitrificans K601	10484695
YP_004389476.1	CDS	Alide2_3635	NC_015422.1	3777451	3778266	R	KEGG: axy:AXYL_00411 short chain dehydrogenase family protein 3; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(3777451..3778266)	Alicycliphilus denitrificans K601	10484696
YP_004389477.1	CDS	Alide2_3636	NC_015422.1	3778343	3779272	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: axy:AXYL_00410 LysR family regulatory helix-turn-helix protein 12; LysR family transcriptional regulator	3778343..3779272	Alicycliphilus denitrificans K601	10484697
YP_004389478.1	CDS	Alide2_3637	NC_015422.1	3779289	3782054	R	SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; TIGRFAM: DNA polymerase 1; KEGG: dia:Dtpsy_2669 DNA polymerase I; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, alpha-helical arch, N-terminal; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; DNA polymerase I	complement(3779289..3782054)	Alicycliphilus denitrificans K601	10484698
YP_004389479.1	CDS	Alide2_3638	NC_015422.1	3782136	3782558	D	KEGG: ajs:Ajs_3318 hypothetical protein; hypothetical protein	3782136..3782558	Alicycliphilus denitrificans K601	10484699
YP_004389480.1	CDS	Alide2_3639	NC_015422.1	3782590	3782955	D	PFAM: Protein of unknown function DUF2782; KEGG: dia:Dtpsy_2671 hypothetical protein; hypothetical protein	3782590..3782955	Alicycliphilus denitrificans K601	10484700
YP_004389481.1	CDS	Alide2_3640	NC_015422.1	3783033	3783983	D	TIGRFAM: Homoserine kinase ThrB; KEGG: ajs:Ajs_3320 homoserine kinase; PFAM: Aminoglycoside phosphotransferase; homoserine kinase	3783033..3783983	Alicycliphilus denitrificans K601	10484701
YP_004389482.1	CDS	Alide2_3641	NC_015422.1	3784030	3784851	D	KEGG: ajs:Ajs_3321 hypothetical protein; hypothetical protein	3784030..3784851	Alicycliphilus denitrificans K601	10484702
YP_004389483.1	CDS	Alide2_3642	NC_015422.1	3784864	3786480	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; KEGG: dba:Dbac_1471 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; Extracellular solute-binding protein, family 3; extracellular sensor-containing diguanylate cyclase	complement(3784864..3786480)	Alicycliphilus denitrificans K601	10484703
YP_004389484.1	CDS	Alide2_3643	NC_015422.1	3786748	3788697	D	PFAM: Protein of unknown function DUF839; KEGG: aav:Aave_1926 putative exported alkaline phosphatase; hypothetical protein	3786748..3788697	Alicycliphilus denitrificans K601	10484704
YP_004389485.1	CDS	Alide2_3644	NC_015422.1	3788719	3791109	R	PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_2677 UvrD/REP helicase; UvrD/REP helicase	complement(3788719..3791109)	Alicycliphilus denitrificans K601	10484705
YP_004389486.1	CDS	Alide2_3645	NC_015422.1	3791311	3792288	D	TIGRFAM: Guanosine monophosphate reductase 2; KEGG: aav:Aave_1911 guanosine 5'-monophosphate oxidoreductase; PFAM: IMP dehydrogenase/GMP reductase; guanosine monophosphate reductase	3791311..3792288	Alicycliphilus denitrificans K601	10484706
YP_004389487.1	CDS	Alide2_3646	NC_015422.1	3792625	3792948	R	PFAM: Protein of unknown function DUF2149; KEGG: dia:Dtpsy_2683 hypothetical protein; hypothetical protein	complement(3792625..3792948)	Alicycliphilus denitrificans K601	10484708
YP_004389488.1	CDS	Alide2_3647	NC_015422.1	3792945	3793481	R	KEGG: gpb:HDN1F_26000 hypothetical protein; hypothetical protein	complement(3792945..3793481)	Alicycliphilus denitrificans K601	10484709
YP_004389489.1	CDS	Alide2_3648	NC_015422.1	3793544	3794140	R	KEGG: lma:LmjF27.0240 kinetoplast-associated protein-like protein; kinetoplast-associated protein-like protein	complement(3793544..3794140)	Alicycliphilus denitrificans K601	10484710
YP_004389490.1	CDS	Alide2_3649	NC_015422.1	3795030	3799097	R	KEGG: dia:Dtpsy_2685 cobaltochelatase; PFAM: CobN/magnesium chelatase; Cobaltochelatase	complement(3795030..3799097)	Alicycliphilus denitrificans K601	10484711
YP_004389491.1	CDS	Alide2_3650	NC_015422.1	3799149	3801104	R	PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; KEGG: dia:Dtpsy_2686 TonB-dependent receptor plug; TonB-dependent receptor plug	complement(3799149..3801104)	Alicycliphilus denitrificans K601	10484712
YP_004389492.1	CDS	Alide2_3651	NC_015422.1	3801424	3802593	R	PFAM: NnrS; KEGG: dia:Dtpsy_2680 NnrS family protein; NnrS family protein	complement(3801424..3802593)	Alicycliphilus denitrificans K601	10484713
YP_004389493.1	CDS	Alide2_3652	NC_015422.1	3802715	3803575	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2681 ABC transporter related; SMART: ATPase, AAA+ type, core; Taurine-transporting ATPase	complement(3802715..3803575)	Alicycliphilus denitrificans K601	10484714
YP_004389494.1	CDS	Alide2_3653	NC_015422.1	3803595	3804401	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_2682 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(3803595..3804401)	Alicycliphilus denitrificans K601	10484715
YP_004389495.1	CDS	Alide2_3654	NC_015422.1	3804398	3805414	R	KEGG: dia:Dtpsy_2687 putative periplasmic component of ABC-type transport system; putative ABC transporter periplasmic protein	complement(3804398..3805414)	Alicycliphilus denitrificans K601	10484716
YP_004389496.1	CDS	Alide2_3655	NC_015422.1	3805416	3807569	R	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: dia:Dtpsy_2688 TonB-dependent receptor; TonB-dependent receptor	complement(3805416..3807569)	Alicycliphilus denitrificans K601	10484717
YP_004389497.1	CDS	Alide2_3656	NC_015422.1	3807645	3808376	D	KEGG: dia:Dtpsy_2689 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator	3807645..3808376	Alicycliphilus denitrificans K601	10484718
YP_004389498.1	CDS	Alide2_3657	NC_015422.1	3808412	3808771	D	KEGG: ajs:Ajs_3342 hypothetical protein; hypothetical protein	3808412..3808771	Alicycliphilus denitrificans K601	10484719
YP_004389499.1	CDS	Alide2_3658	NC_015422.1	3808851	3809336	D	PFAM: DR1885-like metal-binding protein; KEGG: dia:Dtpsy_2691 protein of unknown function DUF461; hypothetical protein	3808851..3809336	Alicycliphilus denitrificans K601	10484720
YP_004389500.1	CDS	Alide2_3659	NC_015422.1	3809524	3810756	D	KEGG: ajs:Ajs_3344 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: Drug resistance transporter Bcr/CflA subfamily; PFAM: Major facilitator superfamily MFS-1; Bcr/CflA subfamily drug resistance transporter	3809524..3810756	Alicycliphilus denitrificans K601	10484721
YP_004389501.1	CDS	Alide2_3660	NC_015422.1	3810779	3811621	R	KEGG: vap:Vapar_0607 hypothetical protein; hypothetical protein	complement(3810779..3811621)	Alicycliphilus denitrificans K601	10484722
YP_004389502.1	CDS	Alide2_3661	NC_015422.1	3811671	3811967	R	PFAM: YCII-related; KEGG: cti:RALTA_B1424 YciI-like protein; YCII-like protein	complement(3811671..3811967)	Alicycliphilus denitrificans K601	10484723
YP_004389503.1	CDS	Alide2_3662	NC_015422.1	3812006	3812989	R	KEGG: reh:PHG396 putative NagM-like protein; putative NagM-like protein	complement(3812006..3812989)	Alicycliphilus denitrificans K601	10484724
YP_004389504.1	CDS	Alide2_3663	NC_015422.1	3813218	3813907	D	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: rpf:Rpic12D_2066 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A	3813218..3813907	Alicycliphilus denitrificans K601	10484725
YP_004389505.1	CDS	Alide2_3664	NC_015422.1	3813904	3814557	D	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: lch:Lcho_0832 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B	3813904..3814557	Alicycliphilus denitrificans K601	10484726
YP_004389506.1	CDS	Alide2_3665	NC_015422.1	3814603	3814881	D	TIGRFAM: Muconolactone delta-isomerase; KEGG: mno:Mnod_2374 muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase; muconolactone delta-isomerase	3814603..3814881	Alicycliphilus denitrificans K601	10484727
YP_004389507.1	CDS	Alide2_3666	NC_015422.1	3814895	3815788	D	KEGG: reu:Reut_A1508 beta-lactamase-like; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	3814895..3815788	Alicycliphilus denitrificans K601	10484728
YP_004389508.1	CDS	Alide2_3667	NC_015422.1	3815755	3816681	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: reu:Reut_A1507 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator	complement(3815755..3816681)	Alicycliphilus denitrificans K601	10484729
YP_004389509.1	CDS	Alide2_3668	NC_015422.1	3816854	3817738	D	KEGG: vap:Vapar_0607 hypothetical protein; hypothetical protein	3816854..3817738	Alicycliphilus denitrificans K601	10484730
YP_004389510.1	CDS	Alide2_3669	NC_015422.1	3817745	3819208	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: aav:Aave_1895 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	complement(3817745..3819208)	Alicycliphilus denitrificans K601	10484731
YP_004389511.1	CDS	Alide2_3670	NC_015422.1	3819329	3821101	R	KEGG: dia:Dtpsy_2693 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein	complement(3819329..3821101)	Alicycliphilus denitrificans K601	10484732
YP_004389512.1	CDS	Alide2_3671	NC_015422.1	3821368	3822501	R	PFAM: Extracellular ligand-binding receptor; KEGG: vap:Vapar_5221 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(3821368..3822501)	Alicycliphilus denitrificans K601	10484733
YP_004389513.1	CDS	Alide2_3672	NC_015422.1	3822625	3823236	R	KEGG: dia:Dtpsy_2694 oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III	complement(3822625..3823236)	Alicycliphilus denitrificans K601	10484734
YP_004389514.1	CDS	Alide2_3673	NC_015422.1	3823256	3824548	D	KEGG: dia:Dtpsy_2695 STE24 endopeptidase; PFAM: Peptidase M48; Ste24 endopeptidase	3823256..3824548	Alicycliphilus denitrificans K601	10484735
YP_004389515.1	CDS	Alide2_3674	NC_015422.1	3824545	3824883	D	manually curated; HAMAP: Transcriptional coactivator/pterin dehydratase; KEGG: dia:Dtpsy_2696 transcriptional coactivator/pterin dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase	3824545..3824883	Alicycliphilus denitrificans K601	10484736
YP_004389516.1	CDS	Alide2_3675	NC_015422.1	3824893	3825864	D	KEGG: dia:Dtpsy_2697 ribosome small subunit-dependent GTPase A; TIGRFAM: Ribosome biogenesis GTPase RsgA, putative; PFAM: Ribosome biogenesis GTPase RsgA, putative; ribosome small subunit-dependent GTPase A	3824893..3825864	Alicycliphilus denitrificans K601	10484737
YP_004389517.1	CDS	Alide2_3676	NC_015422.1	3825879	3827537	D	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: axy:AXYL_00922 permease family protein 1; sulfate transporter	3825879..3827537	Alicycliphilus denitrificans K601	10484738
YP_004389518.1	CDS	Alide2_3677	NC_015422.1	3827544	3828626	R	TIGRFAM: Histidinol-phosphate aminotransferase; KEGG: vap:Vapar_1479 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/classII; histidinol-phosphate aminotransferase	complement(3827544..3828626)	Alicycliphilus denitrificans K601	10484739
YP_004389519.1	CDS	Alide2_3678	NC_015422.1	3828702	3829691	R	PFAM: Cobalamin biosynthesis CobD/CbiB; KEGG: dia:Dtpsy_2698 cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CbiB	complement(3828702..3829691)	Alicycliphilus denitrificans K601	10484740
YP_004389520.1	CDS	Alide2_3679	NC_015422.1	3829738	3830421	R	PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3351 NUDIX hydrolase; NUDIX hydrolase	complement(3829738..3830421)	Alicycliphilus denitrificans K601	10484741
YP_004389521.1	CDS	Alide2_3680	NC_015422.1	3830532	3830918	R	KEGG: dac:Daci_5342 ribosomal protein L19; TIGRFAM: Ribosomal protein L19; PFAM: Ribosomal protein L19; 50S ribosomal protein L19	complement(3830532..3830918)	Alicycliphilus denitrificans K601	10484742
YP_004389522.1	CDS	Alide2_3681	NC_015422.1	3831038	3831805	R	PFAM: tRNA (guanine-N1-)-methyltransferase; TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: ajs:Ajs_3353 tRNA (guanine-N(1)-)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase	complement(3831038..3831805)	Alicycliphilus denitrificans K601	10484743
YP_004389523.1	CDS	Alide2_3682	NC_015422.1	3831813	3832385	R	KEGG: dia:Dtpsy_2702 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel; 16S rRNA processing protein RimM	complement(3831813..3832385)	Alicycliphilus denitrificans K601	10484744
YP_004389524.1	CDS	Alide2_3683	NC_015422.1	3832479	3832733	R	KEGG: dia:Dtpsy_2703 30S ribosomal protein S16; TIGRFAM: Ribosomal protein S16; PFAM: Ribosomal protein S16; 30S ribosomal protein S16	complement(3832479..3832733)	Alicycliphilus denitrificans K601	10484745
YP_004389525.1	CDS	Alide2_3684	NC_015422.1	3832850	3833377	D	KEGG: dia:Dtpsy_2704 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; phosphinothricin acetyltransferase	3832850..3833377	Alicycliphilus denitrificans K601	10484746
YP_004389526.1	CDS	Alide2_3685	NC_015422.1	3833400	3833846	D	KEGG: dia:Dtpsy_2705 hypothetical protein; hypothetical protein	3833400..3833846	Alicycliphilus denitrificans K601	10484747
YP_004389527.1	CDS	Alide2_3686	NC_015422.1	3833900	3834910	R	PFAM: Phosphate transporter; KEGG: dia:Dtpsy_2706 phosphate transporter; phosphate transporter	complement(3833900..3834910)	Alicycliphilus denitrificans K601	10484748
YP_004389528.1	CDS	Alide2_3687	NC_015422.1	3834931	3835578	R	PFAM: Putitive phosphate transport regulator; KEGG: dia:Dtpsy_2707 protein of unknown function DUF47; putative phosphate transport regulator	complement(3834931..3835578)	Alicycliphilus denitrificans K601	10484749
YP_004389529.1	CDS	Alide2_3688	NC_015422.1	3835818	3836414	D	KEGG: aav:Aave_1879 OmpA domain-containing protein; OmpA domain-containing protein	3835818..3836414	Alicycliphilus denitrificans K601	10484750
YP_004389530.1	CDS	Alide2_3689	NC_015422.1	3836453	3836818	R	PFAM: Protein of unknown function DUF486; KEGG: dia:Dtpsy_2708 protein of unknown function DUF486; hypothetical protein	complement(3836453..3836818)	Alicycliphilus denitrificans K601	10484751
YP_004389531.1	CDS	Alide2_3690	NC_015422.1	3836911	3837639	R	PFAM: ABC transporter-like; KEGG: ajs:Ajs_3361 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3836911..3837639)	Alicycliphilus denitrificans K601	10484752
YP_004389532.1	CDS	Alide2_3691	NC_015422.1	3837643	3838425	R	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_2710 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	complement(3837643..3838425)	Alicycliphilus denitrificans K601	10484753
YP_004389533.1	CDS	Alide2_3692	NC_015422.1	3838447	3839523	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2711 inner-membrane translocator; ABC transporter permease	complement(3838447..3839523)	Alicycliphilus denitrificans K601	10484754
YP_004389534.1	CDS	Alide2_3693	NC_015422.1	3839540	3840469	R	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_2712 inner-membrane translocator; ABC transporter permease	complement(3839540..3840469)	Alicycliphilus denitrificans K601	10484755
YP_004389535.1	CDS	Alide2_3694	NC_015422.1	3840668	3841987	R	KEGG: xtr:100494158 replication-associated recombination protein A-like; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein	complement(3840668..3841987)	Alicycliphilus denitrificans K601	10484756
YP_004389536.1	CDS	Alide2_3695	NC_015422.1	3841984	3842982	R	KEGG: dia:Dtpsy_2714 integron integrase; TIGRFAM: Integrase, integron-type; PFAM: Integrase, catalytic core, phage; integron integrase	complement(3841984..3842982)	Alicycliphilus denitrificans K601	10484757
YP_004389537.1	CDS	Alide2_3696	NC_015422.1	3843159	3843521	D	KEGG: syc:syc1951_c hypothetical protein; manually curated; PFAM: Cupin 2, conserved barrel; cupin 2 barrel domain-containing protein	3843159..3843521	Alicycliphilus denitrificans K601	10484758
YP_004389538.1	CDS	Alide2_3697	NC_015422.1	3843954	3844841	D	KEGG: pen:PSEEN2126 hypothetical protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein	3843954..3844841	Alicycliphilus denitrificans K601	10484759
YP_004389539.1	CDS	Alide2_3698	NC_015422.1	3844911	3845588	D	KEGG: hch:HCH_04433 restriction endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease	3844911..3845588	Alicycliphilus denitrificans K601	10484760
YP_004389540.1	CDS	Alide2_3699	NC_015422.1	3845653	3845898	D	KEGG: dia:Dtpsy_2715 protein of unknown function DUF1010; manually curated; PFAM: Protein of unknown function DUF1010; hypothetical protein	3845653..3845898	Alicycliphilus denitrificans K601	10484761
YP_004389541.1	CDS	Alide2_3700	NC_015422.1	3845923	3846939	D	KEGG: has:Halsa_0231 hypothetical protein; hypothetical protein	3845923..3846939	Alicycliphilus denitrificans K601	10484762
YP_004389542.1	CDS	Alide2_3701	NC_015422.1	3847009	3847551	D	manually curated; KEGG: vex:VEA_003218 hypothetical protein; hypothetical protein	3847009..3847551	Alicycliphilus denitrificans K601	10484763
YP_004389543.1	CDS	Alide2_3702	NC_015422.1	3847685	3848518	R	PFAM: Integrase, catalytic core; KEGG: tin:Tint_1916 integrase catalytic region; integrase catalytic subunit	complement(3847685..3848518)	Alicycliphilus denitrificans K601	10484764
YP_004389544.1	CDS	Alide2_3703	NC_015422.1	3848551	3848817	R	PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(3848551..3848817)	Alicycliphilus denitrificans K601	10484765
YP_004389545.1	CDS	Alide2_3704	NC_015422.1	3849536	3850252	D	KEGG: bcm:Bcenmc03_4077 hypothetical protein; hypothetical protein	3849536..3850252	Alicycliphilus denitrificans K601	10484766
YP_004389546.1	CDS	Alide2_3705	NC_015422.1	3850685	3850990	D	PFAM: Protein of unknown function DUF2091, periplasmic; KEGG: ctt:CtCNB1_3965 hypothetical protein; hypothetical protein	3850685..3850990	Alicycliphilus denitrificans K601	10484767
YP_004389547.1	CDS	Alide2_3706	NC_015422.1	3851119	3851253	D	hypothetical protein	3851119..3851253	Alicycliphilus denitrificans K601	10484768
YP_004389548.1	CDS	Alide2_3707	NC_015422.1	3851250	3851840	D	KEGG: dia:Dtpsy_2718 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily	3851250..3851840	Alicycliphilus denitrificans K601	10484769
YP_004389549.1	CDS	Alide2_3708	NC_015422.1	3851863	3852819	D	PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 1,4-dihydroxy-2-naphthoate octaprenyltransferase; UbiA prenyltransferase	3851863..3852819	Alicycliphilus denitrificans K601	10484770
YP_004389550.1	CDS	Alide2_3709	NC_015422.1	3852823	3853455	R	TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: ajs:Ajs_3381 outer membrane lipoprotein carrier protein LolA; PFAM: Outer membrane lipoprotein carrier protein LolA; outer-membrane lipoprotein carrier protein	complement(3852823..3853455)	Alicycliphilus denitrificans K601	10484771
YP_004389551.1	CDS	Alide2_3710	NC_015422.1	3853467	3855803	R	KEGG: ajs:Ajs_3382 DNA translocase FtsK; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase FtsK gamma; SMART: DNA translocase FtsK gamma; cell division protein FtsK/SpoIIIE	complement(3853467..3855803)	Alicycliphilus denitrificans K601	10484772
YP_004389552.1	CDS	Alide2_3711	NC_015422.1	3855948	3856898	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; manually curated; KEGG: dia:Dtpsy_2721 thioredoxin reductase; TIGRFAM: Thioredoxin reductase; thioredoxin reductase	3855948..3856898	Alicycliphilus denitrificans K601	10484773
YP_004389553.1	CDS	Alide2_3712	NC_015422.1	3857050	3857283	D	TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: ctt:CtCNB1_0883 ribosomal protein L28; PFAM: Ribosomal protein L28; 50S ribosomal protein L28	3857050..3857283	Alicycliphilus denitrificans K601	10484774
YP_004389554.1	CDS	Alide2_3713	NC_015422.1	3857304	3857474	D	KEGG: dia:Dtpsy_2723 50S ribosomal protein L33; TIGRFAM: Ribosomal protein L33; PFAM: Ribosomal protein L33; 50S ribosomal protein L33	3857304..3857474	Alicycliphilus denitrificans K601	10484775
YP_004389555.1	CDS	Alide2_3714	NC_015422.1	3857586	3858905	R	PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; KEGG: aav:Aave_3433 Fmu (Sun) domain-containing protein; Fmu (Sun) domain-containing protein	complement(3857586..3858905)	Alicycliphilus denitrificans K601	10484776
YP_004389556.1	CDS	Alide2_3715	NC_015422.1	3859021	3859602	R	TIGRFAM: Phosphoribosylglycinamide formyltransferase; KEGG: dac:Daci_5372 phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; phosphoribosylglycinamide formyltransferase	complement(3859021..3859602)	Alicycliphilus denitrificans K601	10484777
YP_004389557.1	CDS	Alide2_3716	NC_015422.1	3859623	3860312	D	KEGG: ctt:CtCNB1_0874 hypothetical protein; HAMAP: Protein of unknown function DUF480; PFAM: Protein of unknown function DUF480; hypothetical protein	3859623..3860312	Alicycliphilus denitrificans K601	10484778
YP_004389558.1	CDS	Alide2_3717	NC_015422.1	3860358	3861539	D	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dia:Dtpsy_2731 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	3860358..3861539	Alicycliphilus denitrificans K601	10484779
YP_004389559.1	CDS	Alide2_3718	NC_015422.1	3861554	3862669	D	PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, type 1; KEGG: dia:Dtpsy_2732 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein	3861554..3862669	Alicycliphilus denitrificans K601	10484780
YP_004389560.1	CDS	Alide2_3719	NC_015422.1	3862724	3863281	R	KEGG: dia:Dtpsy_2733 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease	complement(3862724..3863281)	Alicycliphilus denitrificans K601	10484781
YP_004389561.1	CDS	Alide2_3720	NC_015422.1	3863435	3864481	D	SMART: Riboflavin kinase; TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: ajs:Ajs_3398 bifunctional riboflavin kinase/FMN adenylyltransferase; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF	3863435..3864481	Alicycliphilus denitrificans K601	10484782
YP_004389562.1	CDS	Alide2_3721	NC_015422.1	3864572	3867427	D	TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase, class Ia; KEGG: dia:Dtpsy_2735 isoleucyl-tRNA synthetase; Isoleucyl-tRNA synthetase	3864572..3867427	Alicycliphilus denitrificans K601	10484783
YP_004389563.1	CDS	Alide2_3722	NC_015422.1	3867427	3867924	D	TIGRFAM: Peptidase A8, signal peptidase II; KEGG: dia:Dtpsy_2736 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase	3867427..3867924	Alicycliphilus denitrificans K601	10484784
YP_004389564.1	CDS	Alide2_3723	NC_015422.1	3868017	3869039	D	KEGG: vap:Vapar_1266 transcriptional regulator, LacI family; PFAM: Periplasmic binding protein/LacI transcriptional regulator; HTH transcriptional regulator, LacI; SMART: HTH transcriptional regulator, LacI; lacI family transcriptional regulator	3868017..3869039	Alicycliphilus denitrificans K601	10484785
YP_004389565.1	CDS	Alide2_3724	NC_015422.1	3869079	3870092	D	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: vap:Vapar_1265 extracellular solute-binding protein family 1; family 1 extracellular solute-binding protein	3869079..3870092	Alicycliphilus denitrificans K601	10484786
YP_004389566.1	CDS	Alide2_3725	NC_015422.1	3870089	3870898	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1264 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	3870089..3870898	Alicycliphilus denitrificans K601	10484787
YP_004389567.1	CDS	Alide2_3726	NC_015422.1	3870924	3871724	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: vap:Vapar_1263 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	3870924..3871724	Alicycliphilus denitrificans K601	10484788
YP_004389568.1	CDS	Alide2_3727	NC_015422.1	3871714	3872775	D	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: vap:Vapar_1262 ABC transporter related; SMART: ATPase, AAA+ type, core; polyamine-transporting ATPase	3871714..3872775	Alicycliphilus denitrificans K601	10484789
YP_004389569.1	CDS	Alide2_3728	NC_015422.1	3872772	3873611	D	PFAM: Metallo-dependent phosphatase; KEGG: vap:Vapar_1261 metallophosphoesterase; metallophosphoesterase	3872772..3873611	Alicycliphilus denitrificans K601	10484790
YP_004389570.1	CDS	Alide2_3729	NC_015422.1	3873634	3875301	D	KEGG: aav:Aave_3461 Na/Pi-cotransporter II-related protein; TIGRFAM: Na/Pi co-transporter II-related; PFAM: Na/Pi-cotransporter; PhoU; Na/Pi-cotransporter II-like protein	3873634..3875301	Alicycliphilus denitrificans K601	10484791
YP_004389571.1	CDS	Alide2_3730	NC_015422.1	3875311	3876276	R	PFAM: Bile acid:sodium symporter; KEGG: dia:Dtpsy_2738 hypothetical protein; Bile acid:sodium symporter	complement(3875311..3876276)	Alicycliphilus denitrificans K601	10484792
YP_004389572.1	CDS	Alide2_3731	NC_015422.1	3876382	3877323	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3178 LysR family transcriptional regulator; LysR family transcriptional regulator	3876382..3877323	Alicycliphilus denitrificans K601	10484793
YP_004389573.1	CDS	Alide2_3732	NC_015422.1	3877277	3878095	R	PFAM: NUDIX hydrolase domain; KEGG: ajs:Ajs_3404 NUDIX hydrolase; NUDIX hydrolase	complement(3877277..3878095)	Alicycliphilus denitrificans K601	10484794
YP_004389574.1	CDS	Alide2_3733	NC_015422.1	3878092	3879078	R	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_2740 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase	complement(3878092..3879078)	Alicycliphilus denitrificans K601	10484795
YP_004389575.1	CDS	Alide2_3734	NC_015422.1	3879184	3880086	D	KEGG: ajs:Ajs_3406 hypothetical protein; manually curated; PFAM: Drug/metabolite transporter; hypothetical protein	3879184..3880086	Alicycliphilus denitrificans K601	10484796
YP_004389576.1	CDS	Alide2_3735	NC_015422.1	3880109	3882772	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_2742 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase	complement(3880109..3882772)	Alicycliphilus denitrificans K601	10484797
YP_004389577.1	CDS	Alide2_3736	NC_015422.1	3882769	3883836	R	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ajs:Ajs_3408 TRAP dicarboxylate transporter-DctP subunit; family 7 extracellular solute-binding protein	complement(3882769..3883836)	Alicycliphilus denitrificans K601	10484798
YP_004389578.1	CDS	Alide2_3737	NC_015422.1	3883836	3884666	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_2744 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(3883836..3884666)	Alicycliphilus denitrificans K601	10484799
YP_004389579.1	CDS	Alide2_3738	NC_015422.1	3884868	3886379	R	PFAM: Protein of unknown function DUF112, transmembrane; KEGG: ajs:Ajs_3411 hypothetical protein; hypothetical protein	complement(3884868..3886379)	Alicycliphilus denitrificans K601	10484800
YP_004389580.1	CDS	Alide2_3739	NC_015422.1	3886396	3886884	R	KEGG: dia:Dtpsy_2746 protein of unknown function DUF1468; hypothetical protein	complement(3886396..3886884)	Alicycliphilus denitrificans K601	10484801
YP_004389581.1	CDS	Alide2_3740	NC_015422.1	3887015	3888781	R	KEGG: dia:Dtpsy_2747 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; type II secretion system protein E	complement(3887015..3888781)	Alicycliphilus denitrificans K601	10484802
YP_004389582.1	CDS	Alide2_3741	NC_015422.1	3888786	3889547	R	KEGG: dia:Dtpsy_2748 hypothetical protein; hypothetical protein	complement(3888786..3889547)	Alicycliphilus denitrificans K601	10484803
YP_004389583.1	CDS	Alide2_3742	NC_015422.1	3889544	3890068	R	KEGG: dia:Dtpsy_2749 hypothetical protein; hypothetical protein	complement(3889544..3890068)	Alicycliphilus denitrificans K601	10484804
YP_004389584.1	CDS	Alide2_3743	NC_015422.1	3890143	3890988	R	PFAM: Deoxyribonuclease, TatD-related; KEGG: ajs:Ajs_3416 TatD-related deoxyribonuclease; TatD-related deoxyribonuclease	complement(3890143..3890988)	Alicycliphilus denitrificans K601	10484805
YP_004389585.1	CDS	Alide2_3744	NC_015422.1	3890999	3891196	R	PFAM: Protein of unknown function DUF2892; KEGG: dia:Dtpsy_2751 hypothetical protein; hypothetical protein	complement(3890999..3891196)	Alicycliphilus denitrificans K601	10484806
YP_004389586.1	CDS	Alide2_3745	NC_015422.1	3891226	3891534	R	KEGG: dia:Dtpsy_2752 transcriptional regulator, TrmB; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; ArsR family transcriptional regulator	complement(3891226..3891534)	Alicycliphilus denitrificans K601	10484807
YP_004389587.1	CDS	Alide2_3746	NC_015422.1	3891679	3892041	D	KEGG: dia:Dtpsy_2753 alkylhydroperoxidase like protein, AhpD family; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase-like protein	3891679..3892041	Alicycliphilus denitrificans K601	10484808
YP_004389588.1	CDS	Alide2_3747	NC_015422.1	3892146	3893045	D	PFAM: Peptidase S1/S6, chymotrypsin/Hap; KEGG: aav:Aave_1064 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap	3892146..3893045	Alicycliphilus denitrificans K601	10484809
YP_004389589.1	CDS	Alide2_3748	NC_015422.1	3893060	3894091	D	PFAM: ATPase, AAA-3; KEGG: aav:Aave_1063 ATPase; ATPase	3893060..3894091	Alicycliphilus denitrificans K601	10484810
YP_004389590.1	CDS	Alide2_3749	NC_015422.1	3894084	3895052	D	PFAM: Domain of unknown function DUF58; KEGG: aav:Aave_1062 hypothetical protein; hypothetical protein	3894084..3895052	Alicycliphilus denitrificans K601	10484811
YP_004389591.1	CDS	Alide2_3750	NC_015422.1	3895085	3896131	D	KEGG: aav:Aave_1061 von Willebrand factor, type A; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A	3895085..3896131	Alicycliphilus denitrificans K601	10484812
YP_004389592.1	CDS	Alide2_3751	NC_015422.1	3896246	3898243	R	TIGRFAM: Acetate-CoA ligase; KEGG: aav:Aave_1499 acetyl-coenzyme A synthetase; PFAM: AMP-dependent synthetase/ligase; acetate/CoA ligase	complement(3896246..3898243)	Alicycliphilus denitrificans K601	10484813
YP_004389593.1	CDS	Alide2_3752	NC_015422.1	3898897	3900201	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Glycine betaine/L-proline transport ATP-binding subunit; KEGG: ajs:Ajs_1065 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Cystathionine beta-synthase, core; glycine/betaine/L-proline ABC transporter ATPase	3898897..3900201	Alicycliphilus denitrificans K601	10484814
YP_004389594.1	CDS	Alide2_3753	NC_015422.1	3900198	3901310	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: dia:Dtpsy_0980 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	3900198..3901310	Alicycliphilus denitrificans K601	10484815
YP_004389595.1	CDS	Alide2_3754	NC_015422.1	3901386	3902396	D	PFAM: ABC-type glycine betaine transport system, substrate-binding domain; KEGG: dia:Dtpsy_0979 glycine betaine transporter periplasmic subunit; glycine/betaine ABC transporter substrate-binding protein	3901386..3902396	Alicycliphilus denitrificans K601	10484816
YP_004389596.1	CDS	Alide2_3755	NC_015422.1	3902583	3903365	D	KEGG: dia:Dtpsy_0976 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; Crp/Fnr family transcriptional regulator	3902583..3903365	Alicycliphilus denitrificans K601	10484817
YP_004389597.1	CDS	Alide2_3756	NC_015422.1	3903366	3904751	R	TIGRFAM: Fumarate hydratase, class II; KEGG: aav:Aave_1491 fumarate hydratase; PFAM: Lyase 1, N-terminal; Fumarase C, C-terminal; fumarate hydratase, class II	complement(3903366..3904751)	Alicycliphilus denitrificans K601	10484818
YP_004389598.1	CDS	Alide2_3757	NC_015422.1	3904920	3906479	D	KEGG: dac:Daci_2654 tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha; TIGRFAM: Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; PFAM: Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain; Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha	3904920..3906479	Alicycliphilus denitrificans K601	10484819
YP_004389599.1	CDS	Alide2_3758	NC_015422.1	3906422	3906838	D	KEGG: mno:Mnod_4051 hypothetical protein; hypothetical protein	3906422..3906838	Alicycliphilus denitrificans K601	10484820
YP_004389600.1	CDS	Alide2_3759	NC_015422.1	3906848	3908269	R	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_0971 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase	complement(3906848..3908269)	Alicycliphilus denitrificans K601	10484821
YP_004389601.1	CDS	Alide2_3760	NC_015422.1	3908352	3909020	D	PFAM: Ribosome-associated, YjgA; KEGG: dia:Dtpsy_0970 protein of unknown function DUF615; hypothetical protein	3908352..3909020	Alicycliphilus denitrificans K601	10484822
YP_004389602.1	CDS	Alide2_3761	NC_015422.1	3909017	3909613	D	TIGRFAM: Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; KEGG: ajs:Ajs_1051 molybdopterin adenylyltransferase; SMART: Molybdopterin binding; molybdenum cofactor synthesis domain-containing protein	3909017..3909613	Alicycliphilus denitrificans K601	10484823
YP_004389603.1	CDS	Alide2_3762	NC_015422.1	3909706	3910803	D	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: dia:Dtpsy_0967 alcohol dehydrogenase zinc-binding domain protein; SMART: Polyketide synthase, enoylreductase; alcohol dehydrogenase	3909706..3910803	Alicycliphilus denitrificans K601	10484824
YP_004389604.1	CDS	Alide2_3763	NC_015422.1	3910819	3911481	R	PFAM: Nitroreductase-like; KEGG: dia:Dtpsy_0966 nitroreductase; nitroreductase	complement(3910819..3911481)	Alicycliphilus denitrificans K601	10484825
YP_004389605.1	CDS	Alide2_3764	NC_015422.1	3911548	3912339	R	KEGG: xtr:100496826 serine acetyltransferase-like; TIGRFAM: Serine O-acetyltransferase; serine O-acetyltransferase	complement(3911548..3912339)	Alicycliphilus denitrificans K601	10484826
YP_004389606.1	CDS	Alide2_3765	NC_015422.1	3912377	3913189	R	KEGG: ajs:Ajs_1046 RNA methyltransferase; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase	complement(3912377..3913189)	Alicycliphilus denitrificans K601	10484827
YP_004389607.1	CDS	Alide2_3766	NC_015422.1	3913319	3914272	D	KEGG: dia:Dtpsy_0963 inositol-phosphate phosphatase; PFAM: Inositol monophosphatase; Inositol-phosphate phosphatase	3913319..3914272	Alicycliphilus denitrificans K601	10484828
YP_004389608.1	CDS	Alide2_3767	NC_015422.1	3914614	3915228	D	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: ctt:CtCNB1_3517 tripartite ATP-independent periplasmic protein; TRAP dicarboxylate transporter subunit DctQ	3914614..3915228	Alicycliphilus denitrificans K601	10484829
YP_004389609.1	CDS	Alide2_3768	NC_015422.1	3915247	3917073	D	KEGG: dia:Dtpsy_0958 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM	3915247..3917073	Alicycliphilus denitrificans K601	10484830
YP_004389610.1	CDS	Alide2_3769	NC_015422.1	3917208	3921905	D	KEGG: gdi:GDI_2676 putative ATP-dependent helicase Lhr; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; DEAD/H associated domain-containing protein	3917208..3921905	Alicycliphilus denitrificans K601	10484831
YP_004389611.1	CDS	Alide2_3770	NC_015422.1	3921985	3923067	R	PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ctt:CtCNB1_3520 twin-arginine translocation pathway signal; family 7 extracellular solute-binding protein	complement(3921985..3923067)	Alicycliphilus denitrificans K601	10484832
YP_004389612.1	CDS	Alide2_3771	NC_015422.1	3923195	3925087	R	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Deoxyxylulose-5-phosphate synthase; KEGG: dia:Dtpsy_0956 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; Dehydrogenase, E1 component; deoxyxylulose-5-phosphate synthase	complement(3923195..3925087)	Alicycliphilus denitrificans K601	10484833
YP_004389613.1	CDS	Alide2_3772	NC_015422.1	3925162	3926055	R	PFAM: Polyprenyl synthetase; KEGG: dia:Dtpsy_0955 polyprenyl synthetase; polyprenyl synthetase	complement(3925162..3926055)	Alicycliphilus denitrificans K601	10484834
YP_004389614.1	CDS	Alide2_3773	NC_015422.1	3926055	3926297	R	KEGG: ajs:Ajs_1036 exodeoxyribonuclease VII, small subunit; TIGRFAM: Exonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII, small subunit	complement(3926055..3926297)	Alicycliphilus denitrificans K601	10484835
YP_004389615.1	CDS	Alide2_3774	NC_015422.1	3926573	3927712	D	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ajs:Ajs_1035 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein	3926573..3927712	Alicycliphilus denitrificans K601	10484836
YP_004389616.1	CDS	Alide2_3775	NC_015422.1	3927806	3928717	D	KEGG: dia:Dtpsy_0952 putative transmembrane protein; putative transmembrane protein	3927806..3928717	Alicycliphilus denitrificans K601	10484837
YP_004389617.1	CDS	Alide2_3776	NC_015422.1	3928771	3929670	D	PFAM: Rhodanese-like; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase; SMART: Rhodanese-like; 3-mercaptopyruvate sulfurtransferase	3928771..3929670	Alicycliphilus denitrificans K601	10484838
YP_004389618.1	CDS	Alide2_3777	NC_015422.1	3929876	3931312	R	PFAM: Aldehyde dehydrogenase domain; KEGG: dia:Dtpsy_0944 aldehyde dehydrogenase; aldehyde dehydrogenase	complement(3929876..3931312)	Alicycliphilus denitrificans K601	10484839
YP_004389619.1	CDS	Alide2_3778	NC_015422.1	3931550	3933940	R	TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; Beta-lactamase-like; KEGG: dia:Dtpsy_0933 DNA internalization-related competence protein ComEC/Rec2; SMART: Beta-lactamase-like; DNA internalization-related competence protein ComEC/Rec2	complement(3931550..3933940)	Alicycliphilus denitrificans K601	10484840
YP_004389620.1	CDS	Alide2_3779	NC_015422.1	3934046	3934504	D	PFAM: Endoribonuclease L-PSP; KEGG: ajs:Ajs_1018 endoribonuclease L-PSP; endoribonuclease L-PSP	3934046..3934504	Alicycliphilus denitrificans K601	10484841
YP_004389621.1	CDS	Alide2_3780	NC_015422.1	3934612	3936954	R	SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; KEGG: ajs:Ajs_1016 DNA topoisomerase IV subunit A; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; DNA topoisomerase IV subunit A	complement(3934612..3936954)	Alicycliphilus denitrificans K601	10484842
YP_004389622.1	CDS	Alide2_3781	NC_015422.1	3937010	3938986	R	PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: dia:Dtpsy_0928 DNA topoisomerase IV subunit B; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; DNA topoisomerase	complement(3937010..3938986)	Alicycliphilus denitrificans K601	10484843
YP_004389623.1	CDS	Alide2_3782	NC_015422.1	3939082	3940299	D	KEGG: dia:Dtpsy_0927 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein	3939082..3940299	Alicycliphilus denitrificans K601	10484844
YP_004389624.1	CDS	Alide2_3783	NC_015422.1	3940304	3940432	D	KEGG: ajs:Ajs_1012 hypothetical protein; hypothetical protein	3940304..3940432	Alicycliphilus denitrificans K601	10484845
YP_004389625.1	CDS	Alide2_3784	NC_015422.1	3940432	3940962	D	PFAM: Methyltransferase type 11; KEGG: dia:Dtpsy_0925 methyltransferase type 12; type 11 methyltransferase	3940432..3940962	Alicycliphilus denitrificans K601	10484846
YP_004389626.1	CDS	Alide2_3785	NC_015422.1	3940971	3941867	D	PFAM: Dihydrodipicolinate synthetase; TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: dia:Dtpsy_0924 dihydrodipicolinate synthase; dihydrodipicolinate synthase	3940971..3941867	Alicycliphilus denitrificans K601	10484847
YP_004389627.1	CDS	Alide2_3786	NC_015422.1	3941902	3942990	D	PFAM: Lipoprotein, NlpB; KEGG: ajs:Ajs_1009 NlpB/DapX family lipoprotein; NlpBDapX family lipoprotein	3941902..3942990	Alicycliphilus denitrificans K601	10484848
YP_004389628.1	CDS	Alide2_3787	NC_015422.1	3943556	3944053	R	KEGG: dia:Dtpsy_0921 hypothetical protein; hypothetical protein	complement(3943556..3944053)	Alicycliphilus denitrificans K601	10484849
YP_004389629.1	CDS	Alide2_3788	NC_015422.1	3944070	3945194	R	KEGG: dia:Dtpsy_0920 cupin 4 family protein; PFAM: Cupin, JmjC-type; SMART: Transcription factor jumonji/aspartyl beta-hydroxylase; hypothetical protein	complement(3944070..3945194)	Alicycliphilus denitrificans K601	10484850
YP_004389630.1	CDS	Alide2_3789	NC_015422.1	3945248	3945772	D	PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: dia:Dtpsy_0919 fkbp-type peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase	3945248..3945772	Alicycliphilus denitrificans K601	10484851
YP_004389631.1	CDS	Alide2_3790	NC_015422.1	3945779	3946225	R	TIGRFAM: DeoxyUTP pyrophosphatase; KEGG: xtr:100496823 deoxyuridine 5'-triphosphate nucleotidohydrolase-like; PFAM: DeoxyUTP pyrophosphatase domain; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut	complement(3945779..3946225)	Alicycliphilus denitrificans K601	10484852
YP_004389632.1	CDS	Alide2_3791	NC_015422.1	3946294	3946695	R	hypothetical protein	complement(3946294..3946695)	Alicycliphilus denitrificans K601	10484853
YP_004389633.1	CDS	Alide2_3792	NC_015422.1	3946692	3947918	R	TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: dia:Dtpsy_0916 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein, C-terminal; Flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase	complement(3946692..3947918)	Alicycliphilus denitrificans K601	10484854
YP_004389634.1	CDS	Alide2_3793	NC_015422.1	3947994	3949643	D	PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: dia:Dtpsy_0915 CTP synthetase; CTP synthase	3947994..3949643	Alicycliphilus denitrificans K601	10484855
YP_004389635.1	CDS	Alide2_3794	NC_015422.1	3949649	3950506	D	TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; KEGG: dac:Daci_5106 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase	3949649..3950506	Alicycliphilus denitrificans K601	10484856
YP_004389636.1	CDS	Alide2_3795	NC_015422.1	3950509	3950799	D	PFAM: Protein of unknown function DUF1330; KEGG: dac:Daci_5107 hypothetical protein; hypothetical protein	3950509..3950799	Alicycliphilus denitrificans K601	10484857
YP_004389637.1	CDS	Alide2_3796	NC_015422.1	3950982	3952268	D	TIGRFAM: Enolase; KEGG: xtr:100496359 enolase-like; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase	3950982..3952268	Alicycliphilus denitrificans K601	10484858
YP_004389638.1	CDS	Alide2_3797	NC_015422.1	3952296	3952583	D	PFAM: Septum formation initiator; KEGG: dia:Dtpsy_0911 septum formation initiator; Septum formation initiator	3952296..3952583	Alicycliphilus denitrificans K601	10484859
YP_004389639.1	CDS	Alide2_3798	NC_015422.1	3952653	3953432	R	PFAM: ABC transporter-like; KEGG: rfr:Rfer_1521 ABC transporter related; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(3952653..3953432)	Alicycliphilus denitrificans K601	10484860
YP_004389640.1	CDS	Alide2_3799	NC_015422.1	3953443	3954156	R	KEGG: rfr:Rfer_1523 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	complement(3953443..3954156)	Alicycliphilus denitrificans K601	10484861
YP_004389641.1	CDS	Alide2_3800	NC_015422.1	3954153	3954842	R	KEGG: rfr:Rfer_1524 amino acid ABC transporter permease; TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM domain, His/Glu/Gln/Arg/opine family; PFAM: Binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter permease	complement(3954153..3954842)	Alicycliphilus denitrificans K601	10484862
YP_004389642.1	CDS	Alide2_3801	NC_015422.1	3954873	3955634	R	KEGG: xtr:100498246 histidine-binding periplasmic protein-like; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	complement(3954873..3955634)	Alicycliphilus denitrificans K601	10484863
YP_004389643.1	CDS	Alide2_3802	NC_015422.1	3955699	3956685	R	PFAM: Heat shock protein Hsp33 protein; KEGG: ajs:Ajs_0994 HSP33 protein; Hsp33 protein	complement(3955699..3956685)	Alicycliphilus denitrificans K601	10484864
YP_004389644.1	CDS	Alide2_3803	NC_015422.1	3956695	3957219	R	KEGG: ajs:Ajs_0993 transferase hexapeptide protein; transferase hexapeptide protein	complement(3956695..3957219)	Alicycliphilus denitrificans K601	10484865
YP_004389645.1	CDS	Alide2_3804	NC_015422.1	3957269	3958075	D	KEGG: dia:Dtpsy_0907 protein of unknown function DUF455; manually curated; PFAM: Protein of unknown function DUF455; hypothetical protein	3957269..3958075	Alicycliphilus denitrificans K601	10484866
YP_004389646.1	CDS	Alide2_3805	NC_015422.1	3958164	3959432	D	KEGG: dia:Dtpsy_0906 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein	3958164..3959432	Alicycliphilus denitrificans K601	10484867
YP_004389647.1	CDS	Alide2_3806	NC_015422.1	3959470	3960756	D	KEGG: dia:Dtpsy_0905 diguanylate phosphodiesterase; PFAM: Diguanylate phosphodiesterase, EAL domain; Metal-dependent hydrolase HDOD; SMART: Diguanylate phosphodiesterase, EAL domain; diguanylate phosphodiesterase metal dependent hydrolase domain-containing protein	3959470..3960756	Alicycliphilus denitrificans K601	10484868
YP_004389648.1	CDS	Alide2_3807	NC_015422.1	3960776	3961759	R	KEGG: ajs:Ajs_0989 hypothetical protein; hypothetical protein	complement(3960776..3961759)	Alicycliphilus denitrificans K601	10484869
YP_004389649.1	CDS	Alide2_3808	NC_015422.1	3962031	3963092	D	KEGG: ctt:CtCNB1_2005 methyl-accepting chemotaxis sensory transducer; TIGRFAM: PAS; PFAM: PAS fold-3; PAS sensor protein	3962031..3963092	Alicycliphilus denitrificans K601	10484870
YP_004389650.1	CDS	Alide2_3809	NC_015422.1	3963496	3964194	D	PFAM: Helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein; HxlR family transcriptional regulator	3963496..3964194	Alicycliphilus denitrificans K601	10484871
YP_004389651.1	CDS	Alide2_3810	NC_015422.1	3964197	3964745	R	TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dia:Dtpsy_2968 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC	complement(3964197..3964745)	Alicycliphilus denitrificans K601	10484872
YP_004389652.1	CDS	Alide2_3811	NC_015422.1	3965098	3965364	D	PFAM: Transposase IS3/IS911family; KEGG: ctt:CtCNB1_1899 transposase IS3/IS911; transposase IS3/IS911 family protein	3965098..3965364	Alicycliphilus denitrificans K601	10484873
YP_004389653.1	CDS	Alide2_3812	NC_015422.1	3965382	3966194	D	PFAM: Integrase, catalytic core; KEGG: ajs:Ajs_3784 integrase catalytic subunit; integrase catalytic subunit	3965382..3966194	Alicycliphilus denitrificans K601	10484874
YP_004389654.1	CDS	Alide2_3813	NC_015422.1	3966348	3966674	R	KEGG: rso:RSc1775 hemagglutinin-related protein; hemagglutinin-like protein	complement(3966348..3966674)	Alicycliphilus denitrificans K601	10484875
YP_004389655.1	CDS	Alide2_3814	NC_015422.1	3966698	3967414	R	TIGRFAM: Monofunctional biosynthetic peptidoglycan transglycosylase; HAMAP: Monofunctional biosynthetic peptidoglycan transglycosylase; KEGG: ajs:Ajs_3657 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Glycosyl transferase, family 51; monofunctional biosynthetic peptidoglycan transglycosylase	complement(3966698..3967414)	Alicycliphilus denitrificans K601	10484876
YP_004389656.1	CDS	Alide2_3815	NC_015422.1	3967428	3968276	R	KEGG: ajs:Ajs_3656 shikimate 5-dehydrogenase; TIGRFAM: Shikimate dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate 5-dehydrogenase	complement(3967428..3968276)	Alicycliphilus denitrificans K601	10484877
YP_004389657.1	CDS	Alide2_3816	NC_015422.1	3968283	3969143	R	TIGRFAM: TonB, C-terminal; KEGG: ajs:Ajs_3655 TonB family protein; TonB family protein	complement(3968283..3969143)	Alicycliphilus denitrificans K601	10484878
YP_004389658.1	CDS	Alide2_3817	NC_015422.1	3969153	3971231	R	KEGG: ajs:Ajs_3654 ribonuclease II; PFAM: Ribonuclease II/R; SMART: Ribonuclease II/R; ribonuclease II	complement(3969153..3971231)	Alicycliphilus denitrificans K601	10484879
YP_004389659.1	CDS	Alide2_3818	NC_015422.1	3971355	3972098	D	KEGG: dia:Dtpsy_2963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit	3971355..3972098	Alicycliphilus denitrificans K601	10484880
YP_004389660.1	CDS	Alide2_3819	NC_015422.1	3972187	3972768	D	KEGG: ajs:Ajs_3652 hypothetical protein; hypothetical protein	3972187..3972768	Alicycliphilus denitrificans K601	10484881
YP_004389661.1	CDS	Alide2_3820	NC_015422.1	3972765	3973178	D	PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2961 cytochrome c class I; cytochrome c class I	3972765..3973178	Alicycliphilus denitrificans K601	10484882
YP_004389662.1	CDS	Alide2_3821	NC_015422.1	3973328	3974887	D	PFAM: O-antigen ligase-related; KEGG: dia:Dtpsy_2960 O-antigen polymerase; O-antigen polymerase	3973328..3974887	Alicycliphilus denitrificans K601	10484883
YP_004389663.1	CDS	Alide2_3822	NC_015422.1	3974990	3975577	R	PFAM: Uncharacterised protein family UPF0227/Esterase YqiA; KEGG: ajs:Ajs_3649 hypothetical protein; hypothetical protein	complement(3974990..3975577)	Alicycliphilus denitrificans K601	10484884
YP_004389664.1	CDS	Alide2_3823	NC_015422.1	3975613	3976794	D	KEGG: dia:Dtpsy_2957 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; rod shape-determining protein RodA	3975613..3976794	Alicycliphilus denitrificans K601	10484885
YP_004389665.1	CDS	Alide2_3824	NC_015422.1	3976833	3978293	D	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: dia:Dtpsy_2956 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase	3976833..3978293	Alicycliphilus denitrificans K601	10484886
YP_004389666.1	CDS	Alide2_3825	NC_015422.1	3978535	3979653	D	TIGRFAM: DHAP synthase, class 1; KEGG: dia:Dtpsy_2954 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase	3978535..3979653	Alicycliphilus denitrificans K601	10484887
YP_004389667.1	CDS	Alide2_3826	NC_015422.1	3979739	3980050	D	KEGG: dia:Dtpsy_2953 hypothetical protein; hypothetical protein	3979739..3980050	Alicycliphilus denitrificans K601	10484888
YP_004389668.1	CDS	Alide2_3827	NC_015422.1	3980098	3981540	R	TIGRFAM: Murein peptide ligase; KEGG: ajs:Ajs_3642 UDP-N-acetylmuramate; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase	complement(3980098..3981540)	Alicycliphilus denitrificans K601	10484889
YP_004389669.1	CDS	Alide2_3828	NC_015422.1	3981584	3982219	D	KEGG: ajs:Ajs_3641 hypothetical protein; hypothetical protein	3981584..3982219	Alicycliphilus denitrificans K601	10484890
YP_004389670.1	CDS	Alide2_3829	NC_015422.1	3982216	3982791	D	PFAM: Redoxin; KEGG: dia:Dtpsy_2950 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; Redoxin domain-containing protein	3982216..3982791	Alicycliphilus denitrificans K601	10484891
YP_004389671.1	CDS	Alide2_3830	NC_015422.1	3982902	3983360	D	KEGG: dia:Dtpsy_2949 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxyl carrier protein	3982902..3983360	Alicycliphilus denitrificans K601	10484892
YP_004389672.1	CDS	Alide2_3831	NC_015422.1	3983376	3984725	D	SMART: Biotin carboxylase, C-terminal; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; KEGG: ajs:Ajs_3638 acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; acetyl-CoA carboxylase, biotin carboxylase	3983376..3984725	Alicycliphilus denitrificans K601	10484893
YP_004389673.1	CDS	Alide2_3832	NC_015422.1	3984818	3985714	D	TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: ajs:Ajs_3637 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase, PrmA; 50S ribosomal protein L11 methyltransferase	3984818..3985714	Alicycliphilus denitrificans K601	10484894
YP_004389674.1	CDS	Alide2_3833	NC_015422.1	3985768	3986922	D	KEGG: dia:Dtpsy_2946 MJ0042 family finger-like protein; TIGRFAM: Zinc finger/thioredoxin putative; PFAM: Protein of unknown function DUF3426; MJ0042 family finger-like protein	3985768..3986922	Alicycliphilus denitrificans K601	10484895
YP_004389675.1	CDS	Alide2_3834	NC_015422.1	3986957	3987859	D	KEGG: dia:Dtpsy_2945 PfkB domain protein; PFAM: Carbohydrate/purine kinase; adenosine kinase	3986957..3987859	Alicycliphilus denitrificans K601	10484896
YP_004389676.1	CDS	Alide2_3835	NC_015422.1	3987942	3988490	R	KEGG: dia:Dtpsy_2944 histone protein; histone protein	complement(3987942..3988490)	Alicycliphilus denitrificans K601	10484897
YP_004389677.1	CDS	Alide2_3836	NC_015422.1	3988670	3989860	R	KEGG: dia:Dtpsy_2943 ribonucleotide-diphosphate reductase subunit beta; PFAM: Ribonucleotide reductase; ribonucleoside-diphosphate reductase	complement(3988670..3989860)	Alicycliphilus denitrificans K601	10484898
YP_004389678.1	CDS	Alide2_3837	NC_015422.1	3989999	3992911	R	KEGG: ajs:Ajs_3632 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; ribonucleoside-diphosphate reductase subunit alpha	complement(3989999..3992911)	Alicycliphilus denitrificans K601	10484899
YP_004389679.1	CDS	Alide2_3838	NC_015422.1	3993196	3993777	R	KEGG: dia:Dtpsy_2941 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD	complement(3993196..3993777)	Alicycliphilus denitrificans K601	10484900
YP_004389680.1	CDS	Alide2_3839	NC_015422.1	3993761	3995251	R	KEGG: dia:Dtpsy_2940 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver domain; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver domain; ATPase, AAA+ type, core; Fis family two component sigma54 specific transcriptional regulator	complement(3993761..3995251)	Alicycliphilus denitrificans K601	10484901
YP_004389681.1	CDS	Alide2_3840	NC_015422.1	3995268	3996971	R	KEGG: dia:Dtpsy_2939 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(3995268..3996971)	Alicycliphilus denitrificans K601	10484902
YP_004389682.1	CDS	Alide2_3841	NC_015422.1	3996984	3997211	R	KEGG: dia:Dtpsy_2938 hypothetical protein; hypothetical protein	complement(3996984..3997211)	Alicycliphilus denitrificans K601	10484903
YP_004389683.1	CDS	Alide2_3842	NC_015422.1	3997208	3998005	R	PFAM: Cytochrome c assembly protein; KEGG: dia:Dtpsy_2937 cytochrome c assembly protein; cytochrome c assembly protein	complement(3997208..3998005)	Alicycliphilus denitrificans K601	10484904
YP_004389684.1	CDS	Alide2_3843	NC_015422.1	3998095	3999474	D	TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: ajs:Ajs_3626 signal recognition particle subunit FFH/SRP54 (SRP54); SMART: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; ATPase, AAA+ type, core; signal recognition particle protein	3998095..3999474	Alicycliphilus denitrificans K601	10484905
YP_004389685.1	CDS	Alide2_3844	NC_015422.1	3999519	4000868	R	TIGRFAM: Methylthiotransferase; tRNA-i(6)A37 modification enzyme MiaB; PFAM: Radical SAM; Methylthiotransferase, N-terminal; Deoxyribonuclease/rho motif-related TRAM; KEGG: dia:Dtpsy_2935 (dimethylallyl)adenosine tRNA methylthiotransferase; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein	complement(3999519..4000868)	Alicycliphilus denitrificans K601	10484906
YP_004389686.1	CDS	Alide2_3845	NC_015422.1	4000936	4001337	R	KEGG: aav:Aave_0876 hypothetical protein; hypothetical protein	complement(4000936..4001337)	Alicycliphilus denitrificans K601	10484907
YP_004389687.1	CDS	Alide2_3847	NC_015422.1	4002357	4004138	R	PFAM: Peptidase M61; KEGG: ajs:Ajs_3622 peptidase M61 domain-containing protein; peptidase M61 domain-containing protein	complement(4002357..4004138)	Alicycliphilus denitrificans K601	10484910
YP_004389688.1	CDS	Alide2_3848	NC_015422.1	4004283	4005002	R	PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_3621 thiol:disulfide interchange protein DsbC; disulfide bond isomerase, DsbC/G	complement(4004283..4005002)	Alicycliphilus denitrificans K601	10484911
YP_004389689.1	CDS	Alide2_3849	NC_015422.1	4005046	4006176	R	KEGG: ajs:Ajs_3620 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; FAD dependent oxidoreductase; Ubiquinone biosynthesis hydroxylase	complement(4005046..4006176)	Alicycliphilus denitrificans K601	10484912
YP_004389690.1	CDS	Alide2_3850	NC_015422.1	4006318	4007412	D	KEGG: dia:Dtpsy_2928 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Domain of unknown function DUF933; GTP-binding protein, HSR1-related; GTP-binding protein YchF	4006318..4007412	Alicycliphilus denitrificans K601	10484913
YP_004389691.1	CDS	Alide2_3851	NC_015422.1	4007631	4007843	D	KEGG: pap:PSPA7_5324 integrase; integrase	4007631..4007843	Alicycliphilus denitrificans K601	10484914
YP_004389692.1	CDS	Alide2_3852	NC_015422.1	4007909	4008175	D	PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	4007909..4008175	Alicycliphilus denitrificans K601	10484915
YP_004389693.1	CDS	Alide2_3853	NC_015422.1	4008208	4008450	D	KEGG: pna:Pnap_4649 IS1477 transposase; hypothetical protein	4008208..4008450	Alicycliphilus denitrificans K601	10484916
YP_004389694.1	CDS	Alide2_3854	NC_015422.1	4008505	4008933	D	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	4008505..4008933	Alicycliphilus denitrificans K601	10484917
YP_004389695.1	CDS	Alide2_3855	NC_015422.1	4008930	4009262	D	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	4008930..4009262	Alicycliphilus denitrificans K601	10484918
YP_004389696.1	CDS	Alide2_3856	NC_015422.1	4009345	4010859	D	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	4009345..4010859	Alicycliphilus denitrificans K601	10484919
YP_004389697.1	CDS	Alide2_3858	NC_015422.1	4011492	4013018	R	KEGG: bvi:Bcep1808_2622 integrase catalytic subunit; integrase catalytic subunit	complement(4011492..4013018)	Alicycliphilus denitrificans K601	10484921
YP_004389698.1	CDS	Alide2_3860	NC_015422.1	4013366	4015165	D	KEGG: dar:Daro_1555 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	4013366..4015165	Alicycliphilus denitrificans K601	10484923
YP_004389699.1	CDS	Alide2_3861	NC_015422.1	4015456	4016091	R	PFAM: DSBA-like thioredoxin domain; KEGG: bpl:BURPS1106A_A3104 thioredoxin domain-containing protein; DSBA oxidoreductase	complement(4015456..4016091)	Alicycliphilus denitrificans K601	10484924
YP_004389700.1	CDS	Alide2_3862	NC_015422.1	4016088	4017341	R	KEGG: app:CAP2UW1_0749 drug resistance transporter, Bcr/CflA subfamily; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein	complement(4016088..4017341)	Alicycliphilus denitrificans K601	10484925
YP_004389701.1	CDS	Alide2_3863	NC_015422.1	4017341	4017895	R	PFAM: Protein of unknown function DUF1234; KEGG: bge:BC1002_3447 protein of unknown function DUF1234; hypothetical protein	complement(4017341..4017895)	Alicycliphilus denitrificans K601	10484926
YP_004389702.1	CDS	Alide2_3864	NC_015422.1	4017920	4019224	R	PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_7178 major facilitator transporter; major facilitator superfamily protein	complement(4017920..4019224)	Alicycliphilus denitrificans K601	10484927
YP_004389703.1	CDS	Alide2_3865	NC_015422.1	4019329	4020390	R	PFAM: Protein of unknown function DUF849, prokaryotic; KEGG: reu:Reut_A0020 hypothetical protein; hypothetical protein	complement(4019329..4020390)	Alicycliphilus denitrificans K601	10484928
YP_004389704.1	CDS	Alide2_3866	NC_015422.1	4020473	4021330	R	KEGG: bph:Bphy_7176 taurine dioxygenase; PFAM: Taurine catabolism dioxygenase TauD/TfdA; Taurine dioxygenase	complement(4020473..4021330)	Alicycliphilus denitrificans K601	10484929
YP_004389705.1	CDS	Alide2_3867	NC_015422.1	4021344	4022324	R	PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; KEGG: reu:Reut_A2148 zinc-containing alcohol dehydrogenase superfamily protein; SMART: Polyketide synthase, enoylreductase; NADPH:quinone reductase	complement(4021344..4022324)	Alicycliphilus denitrificans K601	10484930
YP_004389706.1	CDS	Alide2_3868	NC_015422.1	4022351	4023370	R	PFAM: UspA; Haemerythrin/HHE cation-binding motif; KEGG: reu:Reut_B3843 hypothetical protein; UspA domain-containing protein	complement(4022351..4023370)	Alicycliphilus denitrificans K601	10484931
YP_004389707.1	CDS	Alide2_3869	NC_015422.1	4023407	4023715	R	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: bge:BC1002_3448 Rieske (2Fe-2S) iron-sulfur domain protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein	complement(4023407..4023715)	Alicycliphilus denitrificans K601	10484932
YP_004389708.1	CDS	Alide2_3870	NC_015422.1	4023876	4026611	D	KEGG: reu:Reut_B3844 regulatory protein, LuxR; PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; LuxR family ATP-dependent transcriptional regulator	4023876..4026611	Alicycliphilus denitrificans K601	10484933
YP_004389709.1	CDS	Alide2_3871	NC_015422.1	4026834	4028570	D	PFAM: Protein of unknown function DUF1302; KEGG: lch:Lcho_2162 hypothetical protein; hypothetical protein	4026834..4028570	Alicycliphilus denitrificans K601	10484934
YP_004389710.1	CDS	Alide2_3872	NC_015422.1	4028582	4029931	D	PFAM: Protein of unknown function DUF1329; KEGG: lch:Lcho_2163 hypothetical protein; hypothetical protein	4028582..4029931	Alicycliphilus denitrificans K601	10484935
YP_004389711.1	CDS	Alide2_3873	NC_015422.1	4030158	4031231	D	KEGG: psa:PST_0617 glycosyl hydrolase; glycosyl hydrolase	4030158..4031231	Alicycliphilus denitrificans K601	10484936
YP_004389712.1	CDS	Alide2_3874	NC_015422.1	4031257	4033737	D	KEGG: psa:PST_0618 transporter, putative; transporter	4031257..4033737	Alicycliphilus denitrificans K601	10484937
YP_004389713.1	CDS	Alide2_3875	NC_015422.1	4033783	4034793	D	PFAM: Uncharacterised protein family UPF0324, prokaryote; KEGG: dac:Daci_1990 hypothetical protein; hypothetical protein	4033783..4034793	Alicycliphilus denitrificans K601	10484938
YP_004389714.1	CDS	Alide2_3877	NC_015422.1	4035147	4035656	R	KEGG: dia:Dtpsy_2910 hypothetical protein; hypothetical protein	complement(4035147..4035656)	Alicycliphilus denitrificans K601	10484940
YP_004389715.1	CDS	Alide2_3878	NC_015422.1	4035805	4036863	D	KEGG: dia:Dtpsy_2909 TIM-barrel protein, nifR3 family; TIGRFAM: tRNA-dihydrouridine synthase, TIM-barrel, NifR3; PFAM: tRNA-dihydrouridine synthase; TIM-barrel protein, nifR3 family	4035805..4036863	Alicycliphilus denitrificans K601	10484941
YP_004389716.1	CDS	Alide2_3879	NC_015422.1	4036841	4037077	D	PFAM: Helix-turn-helix, Fis-type; KEGG: dia:Dtpsy_2908 transcriptional regulator, fis family; Fis family transcriptional regulator	4036841..4037077	Alicycliphilus denitrificans K601	10484942
YP_004389717.1	CDS	Alide2_3880	NC_015422.1	4037159	4038757	D	KEGG: dia:Dtpsy_2907 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; TIGRFAM: AICARFT/IMPCHase bienzyme; HAMAP: AICARFT/IMPCHase bienzyme; SMART: AICARFT/IMPCHase bienzyme, transformylase domain; Methylglyoxal synthase-like domain; bifunctional purine biosynthesis protein purH	4037159..4038757	Alicycliphilus denitrificans K601	10484943
YP_004389718.1	CDS	Alide2_3881	NC_015422.1	4038861	4040165	R	TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; KEGG: dia:Dtpsy_2904 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; glutamate-1-semialdehyde-2,1-aminomutase	complement(4038861..4040165)	Alicycliphilus denitrificans K601	10484944
YP_004389719.1	CDS	Alide2_3882	NC_015422.1	4040149	4041051	R	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dia:Dtpsy_2903 phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase type-1	complement(4040149..4041051)	Alicycliphilus denitrificans K601	10484945
YP_004389720.1	CDS	Alide2_3883	NC_015422.1	4041191	4041364	D	KEGG: aav:Aave_0900 rubredoxin-type Fe(Cys)4 protein; manually curated; PFAM: Rubredoxin-type Fe(Cys)4 protein; Rubredoxin-type Fe(Cys)4 protein	4041191..4041364	Alicycliphilus denitrificans K601	10484946
YP_004389721.1	CDS	Alide2_3884	NC_015422.1	4041416	4041820	D	KEGG: aav:Aave_0901 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	4041416..4041820	Alicycliphilus denitrificans K601	10484947
YP_004389722.1	CDS	Alide2_3885	NC_015422.1	4041820	4042185	D	KEGG: dia:Dtpsy_2900 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	4041820..4042185	Alicycliphilus denitrificans K601	10484948
YP_004389723.1	CDS	Alide2_3886	NC_015422.1	4042202	4042729	D	KEGG: ajs:Ajs_3576 putative CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein	4042202..4042729	Alicycliphilus denitrificans K601	10484949
YP_004389724.1	CDS	Alide2_3887	NC_015422.1	4042750	4045014	D	KEGG: dia:Dtpsy_2898 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	4042750..4045014	Alicycliphilus denitrificans K601	10484950
YP_004389725.1	CDS	Alide2_3888	NC_015422.1	4045058	4050901	D	KEGG: dia:Dtpsy_2897 CheA signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; Signal transduction histidine kinase, subgroup, homodimeric; CheW-like protein; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; CheW-like protein; CheA signal transduction histidine kinase	4045058..4050901	Alicycliphilus denitrificans K601	10484951
YP_004389726.1	CDS	Alide2_3889	NC_015422.1	4050990	4051622	D	manually curated; HAMAP: Protein of unknown function DUF179; KEGG: dia:Dtpsy_2896 protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; hypothetical protein	4050990..4051622	Alicycliphilus denitrificans K601	10484952
YP_004389727.1	CDS	Alide2_3890	NC_015422.1	4051619	4052038	D	SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: dia:Dtpsy_2895 Holliday junction resolvase-like protein; HAMAP: Resolvase, holliday junction-type, YqgF-like; PFAM: Resolvase, holliday junction-type, YqgF-like; Holliday junction resolvase	4051619..4052038	Alicycliphilus denitrificans K601	10484953
YP_004389728.1	CDS	Alide2_3891	NC_015422.1	4052035	4052571	D	KEGG: dia:Dtpsy_2894 phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; Uracil phosphoribosyltransferase	4052035..4052571	Alicycliphilus denitrificans K601	10484954
YP_004389729.1	CDS	Alide2_3892	NC_015422.1	4052574	4053536	D	PFAM: Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain; Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase, eukaryotic; KEGG: dia:Dtpsy_2893 aspartate carbamoyltransferase catalytic subunit; aspartate carbamoyltransferase	4052574..4053536	Alicycliphilus denitrificans K601	10484955
YP_004389730.1	CDS	Alide2_3893	NC_015422.1	4053604	4054899	D	KEGG: dia:Dtpsy_2892 amidohydrolase; PFAM: Amidohydrolase 1; Allantoinase	4053604..4054899	Alicycliphilus denitrificans K601	10484956
YP_004389731.1	CDS	Alide2_3894	NC_015422.1	4054910	4055650	D	KEGG: dia:Dtpsy_2891 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	4054910..4055650	Alicycliphilus denitrificans K601	10484957
YP_004389732.1	CDS	Alide2_3895	NC_015422.1	4055653	4056717	R	PFAM: ABC transporter-like; Transport-associated OB, type 2; KEGG: ajs:Ajs_3566 ABC transporter related; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase	complement(4055653..4056717)	Alicycliphilus denitrificans K601	10484958
YP_004389733.1	CDS	Alide2_3896	NC_015422.1	4056765	4058450	D	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_3565 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	4056765..4058450	Alicycliphilus denitrificans K601	10484959
YP_004389734.1	CDS	Alide2_3897	NC_015422.1	4058466	4058816	D	KEGG: ajs:Ajs_3564 arsenate reductase; TIGRFAM: Arsenate reductase; PFAM: Arsenate reductase-like; arsenate reductase	4058466..4058816	Alicycliphilus denitrificans K601	10484960
YP_004389735.1	CDS	Alide2_3898	NC_015422.1	4058883	4060403	D	SMART: PDZ/DHR/GLGF; TIGRFAM: Peptidase S1C, Do; KEGG: aav:Aave_3965 protease Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; protease Do	4058883..4060403	Alicycliphilus denitrificans K601	10484961
YP_004389736.1	CDS	Alide2_3899	NC_015422.1	4060432	4061100	D	KEGG: vap:Vapar_2384 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	4060432..4061100	Alicycliphilus denitrificans K601	10484962
YP_004389737.1	CDS	Alide2_3900	NC_015422.1	4061097	4062473	D	KEGG: aav:Aave_3963 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; HAMP linker domain; integral membrane sensor signal transduction histidine kinase	4061097..4062473	Alicycliphilus denitrificans K601	10484963
YP_004389738.1	CDS	Alide2_3901	NC_015422.1	4062470	4063873	D	KEGG: ajs:Ajs_3563 cardiolipin synthetase 2; cardiolipin synthetase 2	4062470..4063873	Alicycliphilus denitrificans K601	10484964
YP_004389739.1	CDS	Alide2_3902	NC_015422.1	4063889	4065817	R	KEGG: app:CAP2UW1_1324 oxidoreductase FAD-binding domain protein; PFAM: Oxidoreductase, FAD-binding domain; Ferredoxin; Cytochrome b/b6, N-terminal; Oxidoreductase FAD/NAD(P)-binding; ferredoxin--NAD(+) reductase	complement(4063889..4065817)	Alicycliphilus denitrificans K601	10484965
YP_004389740.1	CDS	Alide2_3903	NC_015422.1	4065814	4067262	R	KEGG: app:CAP2UW1_3424 putative cytochrome c oxidase, subunit I; putative cytochrome c oxidase subunit I	complement(4065814..4067262)	Alicycliphilus denitrificans K601	10484966
YP_004389741.1	CDS	Alide2_3904	NC_015422.1	4067259	4067762	R	KEGG: app:CAP2UW1_1325 hypothetical protein; hypothetical protein	complement(4067259..4067762)	Alicycliphilus denitrificans K601	10484967
YP_004389742.1	CDS	Alide2_3905	NC_015422.1	4067759	4069342	R	PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; 4Fe-4S binding domain; KEGG: app:CAP2UW1_1327 methyl-viologen-reducing hydrogenase delta subunit; methyl-viologen-reducing hydrogenase subunit delta	complement(4067759..4069342)	Alicycliphilus denitrificans K601	10484968
YP_004389743.1	CDS	Alide2_3906	NC_015422.1	4069357	4070214	R	PFAM: Copper chaperone SCO1/SenC; KEGG: app:CAP2UW1_1788 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC	complement(4069357..4070214)	Alicycliphilus denitrificans K601	10484969
YP_004389744.1	CDS	Alide2_3907	NC_015422.1	4070232	4071134	R	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: app:CAP2UW1_1789 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase	complement(4070232..4071134)	Alicycliphilus denitrificans K601	10484970
YP_004389745.1	CDS	Alide2_3908	NC_015422.1	4071152	4072852	R	KEGG: app:CAP2UW1_1790 cytochrome c oxidase subunit I; PFAM: Cytochrome c oxidase, subunit I; cytochrome-c oxidase	complement(4071152..4072852)	Alicycliphilus denitrificans K601	10484971
YP_004389746.1	CDS	Alide2_3909	NC_015422.1	4072866	4073405	R	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: app:CAP2UW1_1791 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II	complement(4072866..4073405)	Alicycliphilus denitrificans K601	10484972
YP_004389747.1	CDS	Alide2_3910	NC_015422.1	4073419	4073571	R	KEGG: mag:amb2220 hypothetical protein; hypothetical protein	complement(4073419..4073571)	Alicycliphilus denitrificans K601	10484973
YP_004389748.1	CDS	Alide2_3911	NC_015422.1	4073838	4074737	D	PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: avn:Avin_00950 cytochrome oxidase assembly protein; cytochrome oxidase assembly	4073838..4074737	Alicycliphilus denitrificans K601	10484974
YP_004389749.1	CDS	Alide2_3912	NC_015422.1	4074947	4079035	R	PFAM: Protein of unknown function DUF490; KEGG: ajs:Ajs_3561 hypothetical protein; hypothetical protein	complement(4074947..4079035)	Alicycliphilus denitrificans K601	10484976
YP_004389750.1	CDS	Alide2_3913	NC_015422.1	4079141	4081036	R	PFAM: Bacterial surface antigen (D15); KEGG: dia:Dtpsy_2883 surface antigen (D15); surface antigen (D15)	complement(4079141..4081036)	Alicycliphilus denitrificans K601	10484977
YP_004389751.1	CDS	Alide2_3914	NC_015422.1	4081041	4082228	R	KEGG: ajs:Ajs_3559 hypothetical protein; hypothetical protein	complement(4081041..4082228)	Alicycliphilus denitrificans K601	10484978
YP_004389752.1	CDS	Alide2_3915	NC_015422.1	4082303	4083652	R	PFAM: MmgE/PrpD; KEGG: nmg:Nmag_3457 MmgE/PrpD family protein; MmgE/PrpD family protein	complement(4082303..4083652)	Alicycliphilus denitrificans K601	10484979
YP_004389753.1	CDS	Alide2_3916	NC_015422.1	4083637	4084419	R	PFAM: Crotonase, core; KEGG: pzu:PHZ_c3022 enoyl-CoA hydratase/isomerase family protein; enoyl-CoA hydratase/isomerase	complement(4083637..4084419)	Alicycliphilus denitrificans K601	10484980
YP_004389754.1	CDS	Alide2_3917	NC_015422.1	4084432	4085592	R	KEGG: sti:Sthe_1794 acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(4084432..4085592)	Alicycliphilus denitrificans K601	10484981
YP_004389755.1	CDS	Alide2_3918	NC_015422.1	4085609	4086805	R	KEGG: sti:Sthe_3003 formyl-CoA transferase; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(4085609..4086805)	Alicycliphilus denitrificans K601	10484982
YP_004389756.1	CDS	Alide2_3919	NC_015422.1	4086813	4087592	R	KEGG: bpy:Bphyt_0617 transcriptional regulator, GntR family; PFAM: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; SMART: HTH transcriptional regulator, GntR; UbiC transcription regulator-associated; GntR family transcriptional regulator	complement(4086813..4087592)	Alicycliphilus denitrificans K601	10484983
YP_004389757.1	CDS	Alide2_3920	NC_015422.1	4087853	4088866	D	KEGG: cti:RALTA_B1738 conserved hypothetical protein; UPF0065; hypothetical protein	4087853..4088866	Alicycliphilus denitrificans K601	10484984
YP_004389758.1	CDS	Alide2_3921	NC_015422.1	4088882	4089481	R	KEGG: dia:Dtpsy_2881 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase	complement(4088882..4089481)	Alicycliphilus denitrificans K601	10484985
YP_004389759.1	CDS	Alide2_3922	NC_015422.1	4089493	4090335	R	KEGG: ajs:Ajs_3556 ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein	complement(4089493..4090335)	Alicycliphilus denitrificans K601	10484986
YP_004389760.1	CDS	Alide2_3923	NC_015422.1	4090456	4091115	D	PFAM: Cytochrome c, class I; KEGG: dia:Dtpsy_2878 cytochrome c class I; cytochrome c class I	4090456..4091115	Alicycliphilus denitrificans K601	10484987
YP_004389761.1	CDS	Alide2_3924	NC_015422.1	4091562	4092443	D	PFAM: UspA; KEGG: ajs:Ajs_3554 UspA domain-containing protein; UspA domain-containing protein	4091562..4092443	Alicycliphilus denitrificans K601	10484988
YP_004389762.1	CDS	Alide2_3925	NC_015422.1	4092378	4092812	R	PFAM: Protein of unknown function DUF1841; KEGG: ajs:Ajs_3553 hypothetical protein; hypothetical protein	complement(4092378..4092812)	Alicycliphilus denitrificans K601	10484989
YP_004389763.1	CDS	Alide2_3926	NC_015422.1	4092823	4093626	R	TIGRFAM: Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; PFAM: Transcription regulator IclR, C-terminal; Transcription regulator IclR, N-terminal; KEGG: dia:Dtpsy_2874 transcriptional regulator, IclR family; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(4092823..4093626)	Alicycliphilus denitrificans K601	10484990
YP_004389764.1	CDS	Alide2_3927	NC_015422.1	4093729	4094424	D	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit A; KEGG: dia:Dtpsy_2873 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit A	4093729..4094424	Alicycliphilus denitrificans K601	10484991
YP_004389765.1	CDS	Alide2_3928	NC_015422.1	4094447	4095091	D	SMART: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, subunit B; KEGG: dia:Dtpsy_2872 3-oxoacid CoA-transferase, B subunit; PFAM: Coenzyme A transferase; 3-oxoacid CoA-transferase subunit B	4094447..4095091	Alicycliphilus denitrificans K601	10484992
YP_004389766.1	CDS	Alide2_3929	NC_015422.1	4095169	4096371	D	TIGRFAM: Beta-ketoadipyl CoA thiolase; Thiolase; KEGG: dac:Daci_5563 beta-ketoadipyl CoA thiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; beta-ketoadipyl CoA thiolase	4095169..4096371	Alicycliphilus denitrificans K601	10484993
YP_004389767.1	CDS	Alide2_3930	NC_015422.1	4096433	4097158	D	KEGG: aav:Aave_3940 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	4096433..4097158	Alicycliphilus denitrificans K601	10484994
YP_004389768.1	CDS	Alide2_3931	NC_015422.1	4097203	4098195	D	KEGG: dia:Dtpsy_2869 hypothetical protein; hypothetical protein	4097203..4098195	Alicycliphilus denitrificans K601	10484995
YP_004389769.1	CDS	Alide2_3933	NC_015422.1	4098577	4099401	R	PFAM: LysR, substrate-binding; KEGG: rec:RHECIAT_CH0001484 putative transcriptional regulator protein, LysR family; LysR family transcriptional regulator	complement(4098577..4099401)	Alicycliphilus denitrificans K601	10484997
YP_004389770.1	CDS	Alide2_3934	NC_015422.1	4099446	4100075	D	KEGG: bpt:Bpet0051 putative secreted protein; hypothetical protein	4099446..4100075	Alicycliphilus denitrificans K601	10484998
YP_004389771.1	CDS	Alide2_3935	NC_015422.1	4100089	4101276	D	TIGRFAM: Peptidase M20D, amidohydrolase; KEGG: bph:Bphy_3769 amidohydrolase; PFAM: Peptidase M20; amidohydrolase	4100089..4101276	Alicycliphilus denitrificans K601	10484999
YP_004389772.1	CDS	Alide2_3936	NC_015422.1	4101390	4102385	R	KEGG: vap:Vapar_4972 hypothetical protein; hypothetical protein	complement(4101390..4102385)	Alicycliphilus denitrificans K601	10485000
YP_004389773.1	CDS	Alide2_3937	NC_015422.1	4102412	4103371	R	KEGG: vap:Vapar_4085 hypothetical protein; hypothetical protein	complement(4102412..4103371)	Alicycliphilus denitrificans K601	10485001
YP_004389774.1	CDS	Alide2_3938	NC_015422.1	4103368	4104801	R	PFAM: MmgE/PrpD; KEGG: vei:Veis_4268 MmgE/PrpD family protein; MmgE/PrpD family protein	complement(4103368..4104801)	Alicycliphilus denitrificans K601	10485002
YP_004389775.1	CDS	Alide2_3939	NC_015422.1	4104806	4105984	R	PFAM: PrpF protein; KEGG: cak:Caul_0497 hypothetical protein; PrpF protein	complement(4104806..4105984)	Alicycliphilus denitrificans K601	10485003
YP_004389776.1	CDS	Alide2_3940	NC_015422.1	4105996	4106997	R	KEGG: pol:Bpro_2294 hypothetical protein; hypothetical protein	complement(4105996..4106997)	Alicycliphilus denitrificans K601	10485004
YP_004389777.1	CDS	Alide2_3941	NC_015422.1	4107020	4107652	R	KEGG: cak:Caul_0508 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase, small subunit	complement(4107020..4107652)	Alicycliphilus denitrificans K601	10485005
YP_004389778.1	CDS	Alide2_3942	NC_015422.1	4107655	4109064	R	KEGG: bja:bll0416 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase, large subunit	complement(4107655..4109064)	Alicycliphilus denitrificans K601	10485006
YP_004389779.1	CDS	Alide2_3943	NC_015422.1	4109072	4109935	R	KEGG: cak:Caul_0509 carboxyvinyl-carboxyphosphonate phosphorylmutase; PFAM: Isocitrate lyase/phosphorylmutase; carboxyvinyl-carboxyphosphonate phosphorylmutase	complement(4109072..4109935)	Alicycliphilus denitrificans K601	10485007
YP_004389780.1	CDS	Alide2_3944	NC_015422.1	4110099	4110893	D	KEGG: mav:MAV_1744 transcriptional regulator, GntR family protein; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	4110099..4110893	Alicycliphilus denitrificans K601	10485008
YP_004389781.1	CDS	Alide2_3945	NC_015422.1	4110948	4112798	R	KEGG: dia:Dtpsy_2868 glutathione-regulated potassium-efflux system protein KefC; TIGRFAM: K+/H+ exchanger; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; potassium efflux system protein	complement(4110948..4112798)	Alicycliphilus denitrificans K601	10485009
YP_004389782.1	CDS	Alide2_3946	NC_015422.1	4112917	4113555	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3544 lysine exporter protein LysE/YggA; lysine exporter protein LysE/YggA	4112917..4113555	Alicycliphilus denitrificans K601	10485010
YP_004389783.1	CDS	Alide2_3947	NC_015422.1	4113635	4114255	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dia:Dtpsy_2866 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase	4113635..4114255	Alicycliphilus denitrificans K601	10485011
YP_004389784.1	CDS	Alide2_3948	NC_015422.1	4114335	4114658	R	KEGG: aav:Aave_3912 hypothetical protein; hypothetical protein	complement(4114335..4114658)	Alicycliphilus denitrificans K601	10485012
YP_004389785.1	CDS	Alide2_3949	NC_015422.1	4114885	4115808	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_3911 LysR family transcriptional regulator; LysR family transcriptional regulator	4114885..4115808	Alicycliphilus denitrificans K601	10485013
YP_004389786.1	CDS	Alide2_3950	NC_015422.1	4115805	4116281	R	PFAM: tRNA/rRNA methyltransferase, SpoU; KEGG: dia:Dtpsy_2864 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU	complement(4115805..4116281)	Alicycliphilus denitrificans K601	10485014
YP_004389787.1	CDS	Alide2_3951	NC_015422.1	4116336	4117073	R	PFAM: Phosphoribosyltransferase; KEGG: ajs:Ajs_3540 ComF family protein; phosphoribosyltransferase	complement(4116336..4117073)	Alicycliphilus denitrificans K601	10485015
YP_004389788.1	CDS	Alide2_3952	NC_015422.1	4117109	4118017	D	KEGG: ajs:Ajs_3539 biotin synthesis protein BioC; biotin synthesis protein BioC	4117109..4118017	Alicycliphilus denitrificans K601	10485016
YP_004389789.1	CDS	Alide2_3953	NC_015422.1	4118469	4119632	D	KEGG: dia:Dtpsy_2860 cytochrome c oxidase, subunit II; TIGRFAM: Cytochrome c oxidase, subunit II; PFAM: Cytochrome c oxidase subunit II C-terminal; Cytochrome C oxidase subunit II, transmembrane domain; Cytochrome c, class I; cytochrome c oxidase subunit II	4118469..4119632	Alicycliphilus denitrificans K601	10485017
YP_004389790.1	CDS	Alide2_3954	NC_015422.1	4119670	4121301	D	KEGG: ajs:Ajs_3536 cytochrome-c oxidase; TIGRFAM: Cytochrome c oxidase, subunit I bacterial type; PFAM: Cytochrome c oxidase, subunit I; cytochrome c oxidase subunit I	4119670..4121301	Alicycliphilus denitrificans K601	10485018
YP_004389791.1	CDS	Alide2_3955	NC_015422.1	4121319	4121435	D	hypothetical protein	4121319..4121435	Alicycliphilus denitrificans K601	10485019
YP_004389792.1	CDS	Alide2_3956	NC_015422.1	4121451	4122074	D	PFAM: Cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: dia:Dtpsy_2857 cytochrome c oxidase assembly protein; cytochrome c oxidase assembly protein CtaG/Cox11	4121451..4122074	Alicycliphilus denitrificans K601	10485020
YP_004389793.1	CDS	Alide2_3957	NC_015422.1	4122074	4122286	D	PFAM: Protein of unknown function DUF2970; KEGG: dia:Dtpsy_2856 hypothetical protein; hypothetical protein	4122074..4122286	Alicycliphilus denitrificans K601	10485021
YP_004389794.1	CDS	Alide2_3958	NC_015422.1	4122346	4123230	D	PFAM: Cytochrome c oxidase, subunit III; KEGG: dia:Dtpsy_2855 cytochrome c oxidase subunit III; cytochrome c oxidase subunit III	4122346..4123230	Alicycliphilus denitrificans K601	10485022
YP_004389795.1	CDS	Alide2_3959	NC_015422.1	4123304	4123537	R	KEGG: ajs:Ajs_3531 putative transmembrane protein; putative transmembrane protein	complement(4123304..4123537)	Alicycliphilus denitrificans K601	10485023
YP_004389796.1	CDS	Alide2_3960	NC_015422.1	4123544	4124311	D	KEGG: dia:Dtpsy_2853 putative transmembrane cytochrome oxidase; putative transmembrane cytochrome oxidase	4123544..4124311	Alicycliphilus denitrificans K601	10485024
YP_004389797.1	CDS	Alide2_3961	NC_015422.1	4124253	4125008	D	KEGG: ajs:Ajs_3529 hypothetical protein; hypothetical protein	4124253..4125008	Alicycliphilus denitrificans K601	10485025
YP_004389798.1	CDS	Alide2_3962	NC_015422.1	4125005	4126162	D	PFAM: Heme A synthase/Protoheme IX farnesyltransferase; KEGG: ajs:Ajs_3528 cytochrome oxidase assembly; cytochrome oxidase assembly	4125005..4126162	Alicycliphilus denitrificans K601	10485026
YP_004389799.1	CDS	Alide2_3963	NC_015422.1	4126159	4127085	D	KEGG: dia:Dtpsy_2850 protoheme IX farnesyltransferase; TIGRFAM: Protohaem IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase	4126159..4127085	Alicycliphilus denitrificans K601	10485027
YP_004389800.1	CDS	Alide2_3964	NC_015422.1	4127143	4127706	D	PFAM: Copper chaperone SCO1/SenC; KEGG: dia:Dtpsy_2849 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC	4127143..4127706	Alicycliphilus denitrificans K601	10485028
YP_004389801.1	CDS	Alide2_3965	NC_015422.1	4127740	4128750	R	KEGG: dia:Dtpsy_2846 hypothetical protein; hypothetical protein	complement(4127740..4128750)	Alicycliphilus denitrificans K601	10485029
YP_004389802.1	CDS	Alide2_3966	NC_015422.1	4128893	4129828	R	KEGG: dia:Dtpsy_2845 RNA polymerase, sigma 32 subunit, RpoH; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-32 subunit RpoH	complement(4128893..4129828)	Alicycliphilus denitrificans K601	10485030
YP_004389803.1	CDS	Alide2_3967	NC_015422.1	4130722	4132236	R	PFAM: Transposase, IS66; KEGG: dia:Dtpsy_2523 transposase IS66; transposase IS66	complement(4130722..4132236)	Alicycliphilus denitrificans K601	10485031
YP_004389804.1	CDS	Alide2_3968	NC_015422.1	4132319	4132651	R	PFAM: Transposase (putative), IS66 Orf2-like; KEGG: rfr:Rfer_2710 IS66 Orf2 like; IS66 Orf2 family protein	complement(4132319..4132651)	Alicycliphilus denitrificans K601	10485032
YP_004389805.1	CDS	Alide2_3969	NC_015422.1	4132648	4133076	R	PFAM: Transposase IS3/IS911family; KEGG: rfr:Rfer_2709 transposase IS3/IS911; transposase IS3/IS911 family protein	complement(4132648..4133076)	Alicycliphilus denitrificans K601	10485033
YP_004389806.1	CDS	Alide2_3970	NC_015422.1	4133131	4133373	R	KEGG: pna:Pnap_4649 IS1477 transposase; hypothetical protein	complement(4133131..4133373)	Alicycliphilus denitrificans K601	10485034
YP_004389807.1	CDS	Alide2_3971	NC_015422.1	4133406	4133672	R	PFAM: Transposase IS3/IS911family; KEGG: pna:Pnap_4650 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(4133406..4133672)	Alicycliphilus denitrificans K601	10485035
YP_004389808.1	CDS	Alide2_3973	NC_015422.1	4134223	4135314	D	PFAM: Sporulation-related domain; KEGG: aav:Aave_3575 sporulation domain-containing protein; Sporulation domain-containing protein	4134223..4135314	Alicycliphilus denitrificans K601	10485037
YP_004389809.1	CDS	Alide2_3974	NC_015422.1	4135388	4135720	D	KEGG: ajs:Ajs_0920 hypothetical protein; hypothetical protein	4135388..4135720	Alicycliphilus denitrificans K601	10485038
YP_004389810.1	CDS	Alide2_3975	NC_015422.1	4135730	4136962	R	TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM; HemN, C-terminal; KEGG: dia:Dtpsy_0856 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase	complement(4135730..4136962)	Alicycliphilus denitrificans K601	10485039
YP_004389811.1	CDS	Alide2_3976	NC_015422.1	4137054	4137671	R	PFAM: Ham1-like protein; TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase; KEGG: dia:Dtpsy_0857 putative deoxyribonucleotide triphosphate pyrophosphatase; nucleoside-triphosphatase rdgB	complement(4137054..4137671)	Alicycliphilus denitrificans K601	10485040
YP_004389812.1	CDS	Alide2_3977	NC_015422.1	4137717	4138454	R	PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: dia:Dtpsy_0858 ribonuclease PH; ribonuclease PH	complement(4137717..4138454)	Alicycliphilus denitrificans K601	10485041
YP_004389813.1	CDS	Alide2_3978	NC_015422.1	4138522	4139424	R	KEGG: dia:Dtpsy_0859 protein serine/threonine phosphatase; PFAM: Sporulation stage II, protein E C-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase	complement(4138522..4139424)	Alicycliphilus denitrificans K601	10485042
YP_004389814.1	CDS	Alide2_3979	NC_015422.1	4139421	4140494	R	KEGG: dia:Dtpsy_0860 serine/threonine protein kinase; PFAM: Serine/threonine-protein kinase-like domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; serine/threonine protein kinase	complement(4139421..4140494)	Alicycliphilus denitrificans K601	10485043
YP_004389815.1	CDS	Alide2_3980	NC_015422.1	4140533	4141426	D	KEGG: ajs:Ajs_0926 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; hypothetical protein	4140533..4141426	Alicycliphilus denitrificans K601	10485044
YP_004389816.1	CDS	Alide2_3981	NC_015422.1	4141458	4144895	R	KEGG: cag:Cagg_1487 hypothetical protein; hypothetical protein	complement(4141458..4144895)	Alicycliphilus denitrificans K601	10485045
YP_004389817.1	CDS	Alide2_3982	NC_015422.1	4144916	4147213	R	KEGG: cag:Cagg_1488 hypothetical protein; hypothetical protein	complement(4144916..4147213)	Alicycliphilus denitrificans K601	10485046
YP_004389818.1	CDS	Alide2_3983	NC_015422.1	4147210	4150125	R	TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: bra:BRADO4376 hypothetical protein; hypothetical protein	complement(4147210..4150125)	Alicycliphilus denitrificans K601	10485047
YP_004389819.1	CDS	Alide2_3984	NC_015422.1	4150122	4152605	R	TIGRFAM: Conserved hypothetical protein CHP02243; KEGG: chl:Chy400_2341 hypothetical protein; hypothetical protein	complement(4150122..4152605)	Alicycliphilus denitrificans K601	10485048
YP_004389820.1	CDS	Alide2_3985	NC_015422.1	4152602	4152970	R	PFAM: GPW/gp25; KEGG: cag:Cagg_1491 gpW/GP25 family protein; GPW/gp25 family protein	complement(4152602..4152970)	Alicycliphilus denitrificans K601	10485049
YP_004389821.1	CDS	Alide2_3986	NC_015422.1	4152974	4153294	R	KEGG: aba:Acid345_0852 hypothetical protein; hypothetical protein	complement(4152974..4153294)	Alicycliphilus denitrificans K601	10485050
YP_004389822.1	CDS	Alide2_3987	NC_015422.1	4153305	4153814	R	PFAM: Phage baseplate assembly protein V; KEGG: nde:NIDE2232 hypothetical protein; baseplate assembly protein V	complement(4153305..4153814)	Alicycliphilus denitrificans K601	10485051
YP_004389823.1	CDS	Alide2_3988	NC_015422.1	4153826	4154968	R	KEGG: nde:NIDE2231 hypothetical protein; hypothetical protein	complement(4153826..4154968)	Alicycliphilus denitrificans K601	10485052
YP_004389824.1	CDS	Alide2_3989	NC_015422.1	4154971	4155333	R	KEGG: aba:Acid345_0855 hypothetical protein; hypothetical protein	complement(4154971..4155333)	Alicycliphilus denitrificans K601	10485053
YP_004389825.1	CDS	Alide2_3990	NC_015422.1	4155336	4155992	R	KEGG: nde:NIDE2229 hypothetical protein; hypothetical protein	complement(4155336..4155992)	Alicycliphilus denitrificans K601	10485054
YP_004389826.1	CDS	Alide2_3991	NC_015422.1	4156009	4157364	R	KEGG: scl:sce1839 hypothetical protein; hypothetical protein	complement(4156009..4157364)	Alicycliphilus denitrificans K601	10485055
YP_004389827.1	CDS	Alide2_3992	NC_015422.1	4157540	4157806	R	hypothetical protein	complement(4157540..4157806)	Alicycliphilus denitrificans K601	10485056
YP_004389828.1	CDS	Alide2_3993	NC_015422.1	4157803	4160340	R	KEGG: scl:sce2110 hypothetical protein; hypothetical protein	complement(4157803..4160340)	Alicycliphilus denitrificans K601	10485057
YP_004389829.1	CDS	Alide2_3994	NC_015422.1	4160337	4162277	R	KEGG: nde:NIDE2224 putative ATPase; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein	complement(4160337..4162277)	Alicycliphilus denitrificans K601	10485058
YP_004389830.1	CDS	Alide2_3995	NC_015422.1	4162274	4163611	R	KEGG: nde:NIDE2223 hypothetical protein; hypothetical protein	complement(4162274..4163611)	Alicycliphilus denitrificans K601	10485059
YP_004389831.1	CDS	Alide2_3996	NC_015422.1	4163608	4164348	R	KEGG: dre:100006405 hypothetical LOC100006405; hypothetical protein	complement(4163608..4164348)	Alicycliphilus denitrificans K601	10485060
YP_004389832.1	CDS	Alide2_3997	NC_015422.1	4164345	4165064	R	KEGG: scl:sce2087 hypothetical protein; hypothetical protein	complement(4164345..4165064)	Alicycliphilus denitrificans K601	10485061
YP_004389833.1	CDS	Alide2_3998	NC_015422.1	4165081	4165605	R	KEGG: cag:Cagg_1504 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02241, phage tail region protein; PFAM: Bacteriophage T4, Gp19, tail tube; hypothetical protein	complement(4165081..4165605)	Alicycliphilus denitrificans K601	10485062
YP_004389834.1	CDS	Alide2_3999	NC_015422.1	4165621	4167513	R	KEGG: nha:Nham_0832 phage tail sheath protein; phage tail sheath protein	complement(4165621..4167513)	Alicycliphilus denitrificans K601	10485063
YP_004389835.1	CDS	Alide2_4000	NC_015422.1	4167905	4168525	D	SMART: Guanylate kinase/L-type calcium channel; TIGRFAM: Guanylate kinase, sub-group; KEGG: dia:Dtpsy_0862 guanylate kinase; PFAM: Guanylate kinase; guanylate kinase	4167905..4168525	Alicycliphilus denitrificans K601	10485064
YP_004389836.1	CDS	Alide2_4001	NC_015422.1	4168545	4168748	D	TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: dia:Dtpsy_0863 DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase, subunit omega/K/RPABC2; DNA-directed RNA polymerase subunit omega	4168545..4168748	Alicycliphilus denitrificans K601	10485065
YP_004389837.1	CDS	Alide2_4002	NC_015422.1	4168849	4171113	D	KEGG: dia:Dtpsy_0864 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT; TGS; Amino acid-binding ACT; Metal-dependent phosphohydrolase, HD subdomain; manually curated; TIGRFAM: RelA/SpoT protein; SMART: RelA/SpoT; Metal-dependent phosphohydrolase, HD domain; (p)ppGpp synthetase I SpoT/RelA	4168849..4171113	Alicycliphilus denitrificans K601	10485066
YP_004389838.1	CDS	Alide2_4003	NC_015422.1	4171120	4171686	R	TIGRFAM: Transcription elongation factor GreB; HAMAP: Transcription elongation factor greA; KEGG: ajs:Ajs_0950 transcription elongation factor GreB; PFAM: Transcription elongation factor, GreA/GreB, N-terminal; Transcription elongation factor, GreA/GreB, C-terminal; transcription elongation factor GreB	complement(4171120..4171686)	Alicycliphilus denitrificans K601	10485067
YP_004389839.1	CDS	Alide2_4004	NC_015422.1	4172015	4172293	R	KEGG: dia:Dtpsy_0866 hypothetical protein; hypothetical protein	complement(4172015..4172293)	Alicycliphilus denitrificans K601	10485069
YP_004389840.1	CDS	Alide2_4005	NC_015422.1	4172418	4172774	D	KEGG: xtr:100487598 30S ribosomal protein S15-like; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; 30S ribosomal protein S15	4172418..4172774	Alicycliphilus denitrificans K601	10485070
YP_004389841.1	CDS	Alide2_4006	NC_015422.1	4173005	4175200	D	SMART: RNA-binding domain, S1; K Homology; TIGRFAM: Polyribonucleotide nucleotidyltransferase; KEGG: ctt:CtCNB1_1057 3' exoribonuclease; PFAM: Exoribonuclease, phosphorolytic domain 1; Ribosomal protein S1, RNA-binding domain; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; polyribonucleotide nucleotidyltransferase	4173005..4175200	Alicycliphilus denitrificans K601	10485071
YP_004389842.1	CDS	Alide2_4007	NC_015422.1	4175311	4176315	D	TIGRFAM: Quinone oxidoreductase putative, PIG3; KEGG: dia:Dtpsy_0869 NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NAD(P)H quinone oxidoreductase, PIG3 family	4175311..4176315	Alicycliphilus denitrificans K601	10485072
YP_004389843.1	CDS	Alide2_4008	NC_015422.1	4176303	4177106	D	TIGRFAM: Triosephosphate isomerase; KEGG: dia:Dtpsy_0870 triosephosphate isomerase; PFAM: Triosephosphate isomerase; triosephosphate isomerase	4176303..4177106	Alicycliphilus denitrificans K601	10485073
YP_004389844.1	CDS	Alide2_4009	NC_015422.1	4177103	4177468	D	KEGG: dia:Dtpsy_0871 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG	4177103..4177468	Alicycliphilus denitrificans K601	10485074
YP_004389845.1	CDS	Alide2_4010	NC_015422.1	4177727	4178116	D	KEGG: ajs:Ajs_0957 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; NAD(P)H-quinone oxidoreductase subunit 3	4177727..4178116	Alicycliphilus denitrificans K601	10485076
YP_004389846.1	CDS	Alide2_4011	NC_015422.1	4178153	4178632	D	TIGRFAM: NADH-ubiquinone oxidoreductase, 20 Kd subunit; KEGG: dia:Dtpsy_0873 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; NADH-quinone oxidoreductase subunit B	4178153..4178632	Alicycliphilus denitrificans K601	10485077
YP_004389847.1	CDS	Alide2_4012	NC_015422.1	4178642	4179250	D	KEGG: aav:Aave_1265 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH dehydrogenase, subunit C; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; NADH (or F420H2) dehydrogenase subunit C	4178642..4179250	Alicycliphilus denitrificans K601	10485078
YP_004389848.1	CDS	Alide2_4013	NC_015422.1	4179278	4180531	D	TIGRFAM: NADH dehydrogenase I, subunit D; KEGG: dia:Dtpsy_0875 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; NADH dehydrogenase I subunit D	4179278..4180531	Alicycliphilus denitrificans K601	10485079
YP_004389849.1	CDS	Alide2_4014	NC_015422.1	4180528	4181019	D	TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; KEGG: dia:Dtpsy_0876 NADH-quinone oxidoreductase, E subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH-quinone oxidoreductase subunit E	4180528..4181019	Alicycliphilus denitrificans K601	10485080
YP_004389850.1	CDS	Alide2_4015	NC_015422.1	4181016	4182365	D	SMART: NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; KEGG: dia:Dtpsy_0877 NADH-quinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase subunit F	4181016..4182365	Alicycliphilus denitrificans K601	10485081
YP_004389851.1	CDS	Alide2_4016	NC_015422.1	4182381	4184501	D	SMART: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; KEGG: aav:Aave_1269 NADH dehydrogenase subunit G; PFAM: Molybdopterin oxidoreductase; Ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; NADH-quinone oxidoreductase subunit G	4182381..4184501	Alicycliphilus denitrificans K601	10485082
YP_004389852.1	CDS	Alide2_4017	NC_015422.1	4184498	4185574	D	KEGG: dia:Dtpsy_0879 NADH dehydrogenase (quinone); PFAM: NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H; NADH dehydrogenase (quinone)	4184498..4185574	Alicycliphilus denitrificans K601	10485083
YP_004389853.1	CDS	Alide2_4018	NC_015422.1	4185591	4186103	D	PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: dia:Dtpsy_0880 NADH dehydrogenase subunit I; NAD(P)H-quinone oxidoreductase subunit I	4185591..4186103	Alicycliphilus denitrificans K601	10485084
YP_004389854.1	CDS	Alide2_4019	NC_015422.1	4186145	4186813	D	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: dia:Dtpsy_0881 NADH-ubiquinone/plastoquinone oxidoreductase chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6	4186145..4186813	Alicycliphilus denitrificans K601	10485085
YP_004389855.1	CDS	Alide2_4020	NC_015422.1	4186810	4187118	D	PFAM: NADH-ubiquinone oxidoreductase chain 4L/K; KEGG: dia:Dtpsy_0882 NADH-ubiquinone oxidoreductase chain 4L; NADH-ubiquinone oxidoreductase chain 4L	4186810..4187118	Alicycliphilus denitrificans K601	10485086
YP_004389856.1	CDS	Alide2_4021	NC_015422.1	4187175	4189184	D	TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; KEGG: dia:Dtpsy_0883 proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit L	4187175..4189184	Alicycliphilus denitrificans K601	10485087
YP_004389857.1	CDS	Alide2_4022	NC_015422.1	4189198	4190673	D	TIGRFAM: NADH-quinone oxidoreductase, chain M/4; KEGG: dia:Dtpsy_0884 proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 4, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit M	4189198..4190673	Alicycliphilus denitrificans K601	10485088
YP_004389858.1	CDS	Alide2_4023	NC_015422.1	4190695	4192191	D	TIGRFAM: NAD(P)H-quinone oxidoreductase, subunit N/subunit 2; KEGG: dia:Dtpsy_0885 NADH dehydrogenase subunit N; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; proton-translocating NADH-quinone oxidoreductase subunit N	4190695..4192191	Alicycliphilus denitrificans K601	10485089
YP_004389859.1	CDS	Alide2_4024	NC_015422.1	4192211	4192528	D	PFAM: Uncharacterised conserved protein UCP019883, membrane; KEGG: dia:Dtpsy_0886 putative transmembrane protein; hypothetical protein	4192211..4192528	Alicycliphilus denitrificans K601	10485090
YP_004389860.1	CDS	Alide2_4025	NC_015422.1	4192539	4193003	D	KEGG: dia:Dtpsy_0887 protein of unknown function DUF1178; manually curated; PFAM: Protein of unknown function DUF1178; hypothetical protein	4192539..4193003	Alicycliphilus denitrificans K601	10485091
YP_004389861.1	CDS	Alide2_4026	NC_015422.1	4193010	4193378	R	KEGG: ajs:Ajs_0974 hypothetical protein; hypothetical protein	complement(4193010..4193378)	Alicycliphilus denitrificans K601	10485092
YP_004389862.1	CDS	Alide2_4027	NC_015422.1	4193422	4194840	R	PFAM: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain; KEGG: ajs:Ajs_0977 glutamate dehydrogenase; SMART: Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal; glutamate dehydrogenase	complement(4193422..4194840)	Alicycliphilus denitrificans K601	10485093
YP_004389863.1	CDS	Alide2_4028	NC_015422.1	4195073	4197037	R	SMART: MutL, C-terminal, dimerisation; TIGRFAM: DNA mismatch repair protein, N-terminal; KEGG: ajs:Ajs_0978 DNA mismatch repair protein MutL; HAMAP: DNA mismatch repair protein, MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATPase-like, ATP-binding domain; DNA mismatch repair protein mutL	complement(4195073..4197037)	Alicycliphilus denitrificans K601	10485094
YP_004389864.1	CDS	Alide2_4029	NC_015422.1	4197045	4197299	R	KEGG: dia:Dtpsy_0894 17 kDa surface antigen; 17 kDa surface antigen	complement(4197045..4197299)	Alicycliphilus denitrificans K601	10485095
YP_004389865.1	CDS	Alide2_4030	NC_015422.1	4197513	4198160	D	PFAM: SNARE associated Golgi protein; KEGG: dia:Dtpsy_1467 SNARE associated Golgi protein; hypothetical protein	4197513..4198160	Alicycliphilus denitrificans K601	10485096
YP_004389866.1	CDS	Alide2_4031	NC_015422.1	4198164	4199444	R	TIGRFAM: Guanine deaminase; KEGG: vap:Vapar_3881 guanine deaminase; PFAM: Amidohydrolase 1; guanine deaminase	complement(4198164..4199444)	Alicycliphilus denitrificans K601	10485097
YP_004389867.1	CDS	Alide2_4032	NC_015422.1	4199449	4200804	R	PFAM: Xanthine/uracil/vitamin C permease; KEGG: dac:Daci_5908 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease	complement(4199449..4200804)	Alicycliphilus denitrificans K601	10485098
YP_004389868.1	CDS	Alide2_4033	NC_015422.1	4200801	4201856	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vap:Vapar_3905 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4200801..4201856)	Alicycliphilus denitrificans K601	10485099
YP_004389869.1	CDS	Alide2_4034	NC_015422.1	4201853	4204282	R	TIGRFAM: Xanthine dehydrogenase, molybdopterin binding subunit; KEGG: vap:Vapar_3906 xanthine dehydrogenase, molybdopterin binding subunit; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; xanthine dehydrogenase, molybdopterin binding subunit	complement(4201853..4204282)	Alicycliphilus denitrificans K601	10485100
YP_004389870.1	CDS	Alide2_4035	NC_015422.1	4204292	4205851	R	TIGRFAM: Xanthine dehydrogenase, small subunit; KEGG: dac:Daci_5910 xanthine dehydrogenase small subunit; PFAM: Molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding; CO dehydrogenase flavoprotein, C-terminal; xanthine dehydrogenase, small subunit	complement(4204292..4205851)	Alicycliphilus denitrificans K601	10485101
YP_004389871.1	CDS	Alide2_4036	NC_015422.1	4206061	4206396	R	PFAM: Cupin 2, conserved barrel; KEGG: har:HEAR2969 hypothetical protein; cupin 2 barrel domain-containing protein	complement(4206061..4206396)	Alicycliphilus denitrificans K601	10485102
YP_004389872.1	CDS	Alide2_4037	NC_015422.1	4206421	4207827	R	KEGG: ajs:Ajs_0983 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; cell wall hydrolase/autolysin	complement(4206421..4207827)	Alicycliphilus denitrificans K601	10485103
YP_004389873.1	CDS	Alide2_4038	NC_015422.1	4207824	4208333	R	manually curated; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; KEGG: dia:Dtpsy_0899 protein of unknown function UPF0079; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; hypothetical protein	complement(4207824..4208333)	Alicycliphilus denitrificans K601	10485104
YP_004389874.1	CDS	Alide2_4039	NC_015422.1	4208427	4209398	D	manually curated; TIGRFAM: 4Fe-4S cluster binding; KEGG: xtr:100492313 putative electron transport protein yjeS-like; PFAM: Domain of unknown function DUF1730; 4Fe-4S binding domain; iron-sulfur cluster binding protein	4208427..4209398	Alicycliphilus denitrificans K601	10485105
YP_004389875.1	CDS	Alide2_4040	NC_015422.1	4209457	4210374	R	PFAM: Auxin efflux carrier; KEGG: dia:Dtpsy_0901 auxin efflux carrier; auxin efflux carrier	complement(4209457..4210374)	Alicycliphilus denitrificans K601	10485106
YP_004389876.1	CDS	Alide2_4041	NC_015422.1	4210567	4211532	D	KEGG: dia:Dtpsy_0902 hypothetical protein; hypothetical protein	4210567..4211532	Alicycliphilus denitrificans K601	10485107
YP_004389877.1	CDS	Alide2_4042	NC_015422.1	4211580	4212479	D	TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerC; Tyrosine recombinase XerD; KEGG: dia:Dtpsy_0903 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Tyrosine recombinase xerC	4211580..4212479	Alicycliphilus denitrificans K601	10485108
YP_004389878.1	CDS	Alide2_4043	NC_015422.1	4212776	4213597	D	PFAM: Methyltransferase type 11; KEGG: acp:A2cp1_1683 methyltransferase type 11; type 11 methyltransferase	4212776..4213597	Alicycliphilus denitrificans K601	10485109
YP_004389879.1	CDS	Alide2_4044	NC_015422.1	4213609	4215456	R	KEGG: dia:Dtpsy_2971 thiamine biosynthesis protein ThiC; TIGRFAM: Thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC	complement(4213609..4215456)	Alicycliphilus denitrificans K601	10485110
YP_004389880.1	CDS	Alide2_4045	NC_015422.1	4215693	4215869	R	KEGG: dia:Dtpsy_2972 hypothetical protein; hypothetical protein	complement(4215693..4215869)	Alicycliphilus denitrificans K601	10485111
YP_004389881.1	CDS	Alide2_4046	NC_015422.1	4215879	4216802	R	KEGG: dia:Dtpsy_2973 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase	complement(4215879..4216802)	Alicycliphilus denitrificans K601	10485112
YP_004389882.1	CDS	Alide2_4047	NC_015422.1	4216842	4217606	R	KEGG: bav:BAV0211 IclR-family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(4216842..4217606)	Alicycliphilus denitrificans K601	10485113
YP_004389883.1	CDS	Alide2_4048	NC_015422.1	4217696	4218778	D	PFAM: Putative cyclase; KEGG: aav:Aave_3942 hypothetical protein; cyclase family protein	4217696..4218778	Alicycliphilus denitrificans K601	10485114
YP_004389884.1	CDS	Alide2_4049	NC_015422.1	4218790	4220508	D	KEGG: bpt:Bpet0794 acyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	4218790..4220508	Alicycliphilus denitrificans K601	10485115
YP_004389885.1	CDS	Alide2_4050	NC_015422.1	4220505	4221248	D	KEGG: bbr:BB4035 putative oxidoreductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	4220505..4221248	Alicycliphilus denitrificans K601	10485116
YP_004389886.1	CDS	Alide2_4051	NC_015422.1	4221322	4222527	D	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B3887 UreA/short-chain amide ABC transporter; extracellular ligand-binding receptor	4221322..4222527	Alicycliphilus denitrificans K601	10485117
YP_004389887.1	CDS	Alide2_4052	NC_015422.1	4222544	4223506	D	KEGG: bav:BAV0225 exported protein; exported protein	4222544..4223506	Alicycliphilus denitrificans K601	10485118
YP_004389888.1	CDS	Alide2_4053	NC_015422.1	4223510	4224709	D	KEGG: bav:BAV0226 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	4223510..4224709	Alicycliphilus denitrificans K601	10485119
YP_004389889.1	CDS	Alide2_4054	NC_015422.1	4224790	4226010	R	TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; KEGG: dia:Dtpsy_2975 cell division protein FtsZ; SMART: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ	complement(4224790..4226010)	Alicycliphilus denitrificans K601	10485120
YP_004389890.1	CDS	Alide2_4055	NC_015422.1	4226182	4227411	R	TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; KEGG: dia:Dtpsy_2976 cell division protein FtsA; SMART: Cell division protein FtsA domain; cell division protein FtsA	complement(4226182..4227411)	Alicycliphilus denitrificans K601	10485121
YP_004389891.1	CDS	Alide2_4056	NC_015422.1	4227417	4228289	R	PFAM: Polypeptide-transport-associated, FtsQ-type; Cell division protein FtsQ; KEGG: dia:Dtpsy_2977 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein FtsQ-type	complement(4227417..4228289)	Alicycliphilus denitrificans K601	10485122
YP_004389892.1	CDS	Alide2_4057	NC_015422.1	4228294	4229262	R	TIGRFAM: D-alanine--D-alanine ligase; KEGG: ajs:Ajs_3668 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; D-alanine/D-alanine ligase	complement(4228294..4229262)	Alicycliphilus denitrificans K601	10485123
YP_004389893.1	CDS	Alide2_4058	NC_015422.1	4229259	4230692	R	TIGRFAM: UDP-N-acetylmuramate-alanine ligase; KEGG: dia:Dtpsy_2979 UDP-N-acetylmuramate--L-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramate--alanine ligase	complement(4229259..4230692)	Alicycliphilus denitrificans K601	10485124
YP_004389894.1	CDS	Alide2_4059	NC_015422.1	4230689	4231753	R	TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: N-acetylglucosaminyltransferase, MurG; KEGG: aav:Aave_0821 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 28, C-terminal; Glycosyl transferase, family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	complement(4230689..4231753)	Alicycliphilus denitrificans K601	10485125
YP_004389895.1	CDS	Alide2_4060	NC_015422.1	4231750	4233021	R	KEGG: ajs:Ajs_3671 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; cell division protein FtsW	complement(4231750..4233021)	Alicycliphilus denitrificans K601	10485126
YP_004389896.1	CDS	Alide2_4061	NC_015422.1	4233018	4234799	R	KEGG: dia:Dtpsy_2982 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanine/D-glutamate ligase	complement(4233018..4234799)	Alicycliphilus denitrificans K601	10485127
YP_004389897.1	CDS	Alide2_4062	NC_015422.1	4234796	4235974	R	KEGG: dia:Dtpsy_2983 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; PFAM: Glycosyl transferase, family 4; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase	complement(4234796..4235974)	Alicycliphilus denitrificans K601	10485128
YP_004389898.1	CDS	Alide2_4063	NC_015422.1	4235965	4237356	R	TIGRFAM: UDP-MurNAc-pentapeptide synthetase; KEGG: ajs:Ajs_3674 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase	complement(4235965..4237356)	Alicycliphilus denitrificans K601	10485129
YP_004389899.1	CDS	Alide2_4064	NC_015422.1	4237353	4238858	R	PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: dia:Dtpsy_2985 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	complement(4237353..4238858)	Alicycliphilus denitrificans K601	10485130
YP_004389900.1	CDS	Alide2_4065	NC_015422.1	4238855	4240603	R	KEGG: dia:Dtpsy_2986 peptidoglycan glycosyltransferase; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase	complement(4238855..4240603)	Alicycliphilus denitrificans K601	10485131
YP_004389901.1	CDS	Alide2_4066	NC_015422.1	4240600	4240914	R	KEGG: aav:Aave_0814 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; cell division protein FtsL	complement(4240600..4240914)	Alicycliphilus denitrificans K601	10485132
YP_004389902.1	CDS	Alide2_4067	NC_015422.1	4240911	4241837	R	TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: dia:Dtpsy_2988 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; ribosomal RNA small subunit methyltransferase H	complement(4240911..4241837)	Alicycliphilus denitrificans K601	10485133
YP_004389903.1	CDS	Alide2_4068	NC_015422.1	4241847	4242275	R	TIGRFAM: MraZ; HAMAP: MraZ; KEGG: dia:Dtpsy_2989 cell division protein MraZ; PFAM: MraZ domain; protein mraZ	complement(4241847..4242275)	Alicycliphilus denitrificans K601	10485134
YP_004389904.1	CDS	Alide2_4069	NC_015422.1	4242521	4243825	R	TIGRFAM: Heat shock protein HslU; PFAM: ATPase, AAA-2; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: dia:Dtpsy_2990 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase, AAA+ type, core; heat shock protein HslVU, ATPase subunit HslU	complement(4242521..4243825)	Alicycliphilus denitrificans K601	10485135
YP_004389905.1	CDS	Alide2_4070	NC_015422.1	4243912	4244457	R	KEGG: dia:Dtpsy_2991 ATP-dependent protease peptidase subunit; TIGRFAM: ATP-dependent protease, HslV subunit; PFAM: Proteasome, subunit alpha/beta; ATP-dependent protease HslVU, peptidase subunit	complement(4243912..4244457)	Alicycliphilus denitrificans K601	10485136
YP_004389906.1	CDS	Alide2_4071	NC_015422.1	4244518	4246254	R	KEGG: dia:Dtpsy_2992 hypothetical protein; hypothetical protein	complement(4244518..4246254)	Alicycliphilus denitrificans K601	10485137
YP_004389907.1	CDS	Alide2_4072	NC_015422.1	4246286	4246777	R	TIGRFAM: RNA polymerase-binding, DksA; KEGG: dia:Dtpsy_2993 transcriptional regulator, TraR/DksA family; TraR/DksA family transcriptional regulator	complement(4246286..4246777)	Alicycliphilus denitrificans K601	10485138
YP_004389908.1	CDS	Alide2_4073	NC_015422.1	4247128	4248198	R	KEGG: dia:Dtpsy_2994 cobalamin synthesis protein P47K; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; SMART: Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; cobalamin synthesis protein P47K	complement(4247128..4248198)	Alicycliphilus denitrificans K601	10485139
YP_004389909.1	CDS	Alide2_4074	NC_015422.1	4248291	4248521	R	KEGG: gpb:HDN1F_32180 hypothetical protein; hypothetical protein	complement(4248291..4248521)	Alicycliphilus denitrificans K601	10485140
YP_004389910.1	CDS	Alide2_4075	NC_015422.1	4248698	4249423	R	KEGG: dac:Daci_1875 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	complement(4248698..4249423)	Alicycliphilus denitrificans K601	10485141
YP_004389911.1	CDS	Alide2_4076	NC_015422.1	4249416	4250090	R	TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: dac:Daci_1874 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; excisionase family DNA binding domain-containing protein	complement(4249416..4250090)	Alicycliphilus denitrificans K601	10485142
YP_004389912.1	CDS	Alide2_4077	NC_015422.1	4250171	4250557	D	KEGG: ctt:CtCNB1_1998 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	4250171..4250557	Alicycliphilus denitrificans K601	10485143
YP_004389913.1	CDS	Alide2_4078	NC_015422.1	4250589	4253078	D	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase	4250589..4253078	Alicycliphilus denitrificans K601	10485144
YP_004389914.1	CDS	Alide2_4079	NC_015422.1	4253121	4253789	R	TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Signal transduction response regulator, receiver domain; KEGG: aav:Aave_2239 response regulator receiver protein; SMART: Signal transduction response regulator, receiver domain; excisionase family DNA binding domain-containing protein	complement(4253121..4253789)	Alicycliphilus denitrificans K601	10485145
YP_004389915.1	CDS	Alide2_4080	NC_015422.1	4253854	4254240	D	KEGG: lch:Lcho_0734 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	4253854..4254240	Alicycliphilus denitrificans K601	10485146
YP_004389916.1	CDS	Alide2_4081	NC_015422.1	4254237	4255046	D	KEGG: dac:Daci_0737 metal dependent phosphohydrolase; PFAM: Metal-dependent phosphohydrolase, HD subdomain; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase	4254237..4255046	Alicycliphilus denitrificans K601	10485147
YP_004389917.1	CDS	Alide2_4082	NC_015422.1	4255184	4257262	D	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold-4; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dac:Daci_0735 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS; PAS/PAC sensor signal transduction histidine kinase	4255184..4257262	Alicycliphilus denitrificans K601	10485148
YP_004389918.1	CDS	Alide2_4083	NC_015422.1	4257244	4259001	D	KEGG: lch:Lcho_4371 histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	4257244..4259001	Alicycliphilus denitrificans K601	10485149
YP_004389919.1	CDS	Alide2_4084	NC_015422.1	4259195	4260889	D	KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	4259195..4260889	Alicycliphilus denitrificans K601	10485150
YP_004389920.1	CDS	Alide2_4085	NC_015422.1	4260906	4261868	R	KEGG: dia:Dtpsy_2996 tyrosine recombinase XerC; TIGRFAM: Tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; tyrosine recombinase XerC	complement(4260906..4261868)	Alicycliphilus denitrificans K601	10485151
YP_004389921.1	CDS	Alide2_4086	NC_015422.1	4261962	4262657	R	PFAM: Protein of unknown function DUF484; KEGG: dia:Dtpsy_2997 protein of unknown function DUF484; hypothetical protein	complement(4261962..4262657)	Alicycliphilus denitrificans K601	10485152
YP_004389922.1	CDS	Alide2_4087	NC_015422.1	4262654	4263532	R	TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: dia:Dtpsy_2998 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase	complement(4262654..4263532)	Alicycliphilus denitrificans K601	10485153
YP_004389923.1	CDS	Alide2_4088	NC_015422.1	4263608	4265302	D	manually curated; PFAM: Beta-lactamase-like; NUDIX hydrolase domain; KEGG: dia:Dtpsy_3001 beta-lactamase domain protein; SMART: Beta-lactamase-like; beta-lactamase domain-containing protein	4263608..4265302	Alicycliphilus denitrificans K601	10485154
YP_004389924.1	CDS	Alide2_4089	NC_015422.1	4265295	4266020	D	KEGG: dia:Dtpsy_3002 RNA-binding S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein	4265295..4266020	Alicycliphilus denitrificans K601	10485155
YP_004389925.1	CDS	Alide2_4090	NC_015422.1	4266512	4266739	R	KEGG: ajs:Ajs_3722 hypothetical protein; hypothetical protein	complement(4266512..4266739)	Alicycliphilus denitrificans K601	10485157
YP_004389926.1	CDS	Alide2_4091	NC_015422.1	4266849	4267769	D	TIGRFAM: Cysteine synthase K/M; Cysteine synthase A; KEGG: dac:Daci_1442 cysteine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase	4266849..4267769	Alicycliphilus denitrificans K601	10485158
YP_004389927.1	CDS	Alide2_4092	NC_015422.1	4267800	4268900	D	PFAM: Heat shock protein DnaJ, N-terminal; KEGG: bvi:Bcep1808_3882 heat shock protein DnaJ domain-containing protein; heat shock protein DnaJ domain-containing protein	4267800..4268900	Alicycliphilus denitrificans K601	10485159
YP_004389928.1	CDS	Alide2_4093	NC_015422.1	4269032	4270789	D	PFAM: FAD dependent oxidoreductase; KEGG: dia:Dtpsy_3010 FAD dependent oxidoreductase; FAD dependent oxidoreductase	4269032..4270789	Alicycliphilus denitrificans K601	10485160
YP_004389929.1	CDS	Alide2_4094	NC_015422.1	4270854	4271303	D	PFAM: Carboxymuconolactone decarboxylase; KEGG: dac:Daci_0909 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase	4270854..4271303	Alicycliphilus denitrificans K601	10485161
YP_004389930.1	CDS	Alide2_4095	NC_015422.1	4271342	4272244	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_3510 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4271342..4272244)	Alicycliphilus denitrificans K601	10485162
YP_004389931.1	CDS	Alide2_4096	NC_015422.1	4272314	4273183	D	KEGG: xtr:100489146 citrate lyase subunit beta-like; PFAM: Aldehyde-lyase domain; Citryl-CoA lyase	4272314..4273183	Alicycliphilus denitrificans K601	10485163
YP_004389932.1	CDS	Alide2_4097	NC_015422.1	4273211	4274188	D	KEGG: dac:Daci_3512 hypothetical protein; hypothetical protein	4273211..4274188	Alicycliphilus denitrificans K601	10485164
YP_004389933.1	CDS	Alide2_4098	NC_015422.1	4274252	4275421	D	KEGG: dac:Daci_3513 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	4274252..4275421	Alicycliphilus denitrificans K601	10485165
YP_004389934.1	CDS	Alide2_4099	NC_015422.1	4275418	4276260	D	KEGG: dac:Daci_3514 amidohydrolase 2; manually curated; PFAM: Amidohydrolase 2; amidohydrolase 2	4275418..4276260	Alicycliphilus denitrificans K601	10485166
YP_004389935.1	CDS	Alide2_4100	NC_015422.1	4276277	4277233	D	KEGG: dac:Daci_3515 hypothetical protein; hypothetical protein	4276277..4277233	Alicycliphilus denitrificans K601	10485167
YP_004389936.1	CDS	Alide2_4101	NC_015422.1	4277288	4277794	R	KEGG: cti:RALTA_B1490 transcriptional activator of cyclohexanecarboxylate anaerobic degradation; MarR type; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator	complement(4277288..4277794)	Alicycliphilus denitrificans K601	10485168
YP_004389937.1	CDS	Alide2_4102	NC_015422.1	4277925	4278692	D	TIGRFAM: 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1185 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; PFAM: Short-chain dehydrogenase/reductase SDR; 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase	4277925..4278692	Alicycliphilus denitrificans K601	10485169
YP_004389938.1	CDS	Alide2_4103	NC_015422.1	4278735	4279517	D	TIGRFAM: 2-ketocyclohexanecarboxyl-CoA hydrolase; KEGG: vei:Veis_4105 enoyl-CoA hydratase/isomerase; PFAM: Crotonase, core; 2-ketocyclohexanecarboxyl-CoA hydrolase	4278735..4279517	Alicycliphilus denitrificans K601	10485170
YP_004389939.1	CDS	Alide2_4104	NC_015422.1	4279537	4280694	D	TIGRFAM: Cyclohexanecarboxyl-CoA dehydrogenase; KEGG: lch:Lcho_1187 cyclohexanecarboxyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; cyclohexanecarboxyl-CoA dehydrogenase	4279537..4280694	Alicycliphilus denitrificans K601	10485171
YP_004389940.1	CDS	Alide2_4105	NC_015422.1	4280730	4282385	D	TIGRFAM: Cyclohexanecarboxylate-CoA ligase; KEGG: pna:Pnap_2126 cyclohexanecarboxylate-CoA ligase; PFAM: AMP-dependent synthetase/ligase; cyclohexanecarboxylate-CoA ligase	4280730..4282385	Alicycliphilus denitrificans K601	10485172
YP_004389941.1	CDS	Alide2_4106	NC_015422.1	4282486	4283418	R	KEGG: dia:Dtpsy_2298 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; Electron transfer flavoprotein subunit alpha	complement(4282486..4283418)	Alicycliphilus denitrificans K601	10485173
YP_004389942.1	CDS	Alide2_4107	NC_015422.1	4283436	4284185	R	KEGG: dia:Dtpsy_3012 electron transfer flavoprotein alpha/beta-subunit; PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; SMART: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; electron transfer flavoprotein subunit alpha/beta	complement(4283436..4284185)	Alicycliphilus denitrificans K601	10485174
YP_004389943.1	CDS	Alide2_4108	NC_015422.1	4284210	4285184	R	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3732 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD	complement(4284210..4285184)	Alicycliphilus denitrificans K601	10485175
YP_004389944.1	CDS	Alide2_4109	NC_015422.1	4285192	4286187	R	KEGG: dac:Daci_1400 hypothetical protein; hypothetical protein	complement(4285192..4286187)	Alicycliphilus denitrificans K601	10485176
YP_004389945.1	CDS	Alide2_4110	NC_015422.1	4286260	4287492	R	KEGG: ajs:Ajs_3734 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(4286260..4287492)	Alicycliphilus denitrificans K601	10485177
YP_004389946.1	CDS	Alide2_4111	NC_015422.1	4287517	4287939	R	KEGG: mrb:Mrub_0164 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	complement(4287517..4287939)	Alicycliphilus denitrificans K601	10485178
YP_004389947.1	CDS	Alide2_4112	NC_015422.1	4287976	4288782	R	PFAM: Crotonase, core; KEGG: xtr:100494378 probable enoyl-CoA hydratase paaG-like; enoyl-CoA hydratase/isomerase	complement(4287976..4288782)	Alicycliphilus denitrificans K601	10485179
YP_004389948.1	CDS	Alide2_4113	NC_015422.1	4288898	4290028	R	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; KEGG: dac:Daci_1396 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein	complement(4288898..4290028)	Alicycliphilus denitrificans K601	10485180
YP_004389949.1	CDS	Alide2_4114	NC_015422.1	4290039	4291235	R	KEGG: ajs:Ajs_3737 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1; Isovaleryl-CoA dehydrogenase	complement(4290039..4291235)	Alicycliphilus denitrificans K601	10485181
YP_004389950.1	CDS	Alide2_4115	NC_015422.1	4291248	4292447	R	TIGRFAM: Thiolase; KEGG: dia:Dtpsy_3019 acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal; Thiolase, N-terminal; acetyl-CoA acetyltransferase	complement(4291248..4292447)	Alicycliphilus denitrificans K601	10485182
YP_004389951.1	CDS	Alide2_4116	NC_015422.1	4292593	4294710	R	KEGG: dac:Daci_1393 3-hydroxyacyl-CoA dehydrogenase NAD-binding; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA epimerase	complement(4292593..4294710)	Alicycliphilus denitrificans K601	10485183
YP_004389952.1	CDS	Alide2_4117	NC_015422.1	4294821	4295729	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dac:Daci_1392 LysR family transcriptional regulator; LysR family transcriptional regulator	4294821..4295729	Alicycliphilus denitrificans K601	10485184
YP_004389953.1	CDS	Alide2_4118	NC_015422.1	4295767	4296081	D	KEGG: bpe:BP0072 transposase; transposase	4295767..4296081	Alicycliphilus denitrificans K601	10485185
YP_004389954.1	CDS	Alide2_4119	NC_015422.1	4296168	4297082	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(4296168..4297082)	Alicycliphilus denitrificans K601	10485186
YP_004389955.1	CDS	Alide2_4120	NC_015422.1	4297079	4297402	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(4297079..4297402)	Alicycliphilus denitrificans K601	10485187
YP_004389956.1	CDS	Alide2_4122	NC_015422.1	4297866	4298219	R	KEGG: dia:Dtpsy_3022 hypothetical protein; hypothetical protein	complement(4297866..4298219)	Alicycliphilus denitrificans K601	10485189
YP_004389957.1	CDS	Alide2_4123	NC_015422.1	4298305	4299177	R	PFAM: Peptidase M48; KEGG: ajs:Ajs_3742 heat shock protein HtpX; peptidase M48 Ste24p	complement(4298305..4299177)	Alicycliphilus denitrificans K601	10485190
YP_004389958.1	CDS	Alide2_4124	NC_015422.1	4299304	4300095	R	KEGG: ajs:Ajs_3743 putative transmembrane protein; putative transmembrane protein	complement(4299304..4300095)	Alicycliphilus denitrificans K601	10485191
YP_004389959.1	CDS	Alide2_4125	NC_015422.1	4300077	4301126	R	PFAM: Amidohydrolase 1; TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase homodimeric type; KEGG: dia:Dtpsy_3026 dihydroorotase; dihydroorotase	complement(4300077..4301126)	Alicycliphilus denitrificans K601	10485192
YP_004389960.1	CDS	Alide2_4127	NC_015422.1	4301889	4302272	D	PFAM: Protein of unknown function DUF488; KEGG: rfr:Rfer_4130 hypothetical protein; hypothetical protein	4301889..4302272	Alicycliphilus denitrificans K601	10485194
YP_004389961.1	CDS	Alide2_4128	NC_015422.1	4302282	4302740	D	KEGG: ote:Oter_3729 alkylhydroperoxidase; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase-like protein	4302282..4302740	Alicycliphilus denitrificans K601	10485195
YP_004389962.1	CDS	Alide2_4129	NC_015422.1	4302761	4308595	R	TIGRFAM: Excinuclease ABC, A subunit; PFAM: ABC transporter-like; KEGG: ajs:Ajs_3747 UvrA family protein; SMART: ATPase, AAA+ type, core; excinuclease ABC subunit A	complement(4302761..4308595)	Alicycliphilus denitrificans K601	10485196
YP_004389963.1	CDS	Alide2_4130	NC_015422.1	4308729	4309841	D	PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3029 extracellular ligand-binding receptor; extracellular ligand-binding receptor	4308729..4309841	Alicycliphilus denitrificans K601	10485197
YP_004389964.1	CDS	Alide2_4131	NC_015422.1	4309910	4310077	R	KEGG: ajs:Ajs_3750 hypothetical protein; hypothetical protein	complement(4309910..4310077)	Alicycliphilus denitrificans K601	10485198
YP_004389965.1	CDS	Alide2_4132	NC_015422.1	4310223	4311242	R	KEGG: ajs:Ajs_3751 porin; porin	complement(4310223..4311242)	Alicycliphilus denitrificans K601	10485199
YP_004389966.1	CDS	Alide2_4133	NC_015422.1	4311445	4313139	R	PFAM: General substrate transporter; KEGG: ajs:Ajs_3752 major facilitator superfamily transporter; general substrate transporter	complement(4311445..4313139)	Alicycliphilus denitrificans K601	10485200
YP_004389967.1	CDS	Alide2_4134	NC_015422.1	4313456	4313764	D	PFAM: Protein of unknown function DUF485; KEGG: dac:Daci_5956 hypothetical protein; hypothetical protein	4313456..4313764	Alicycliphilus denitrificans K601	10485201
YP_004389968.1	CDS	Alide2_4135	NC_015422.1	4313761	4315497	D	KEGG: rpf:Rpic12D_0449 SSS sodium solute transporter superfamily; TIGRFAM: Sodium/solute symporter, subgroup; PFAM: Sodium/solute symporter; SSS sodium solute transporter superfamily	4313761..4315497	Alicycliphilus denitrificans K601	10485202
YP_004389969.1	CDS	Alide2_4136	NC_015422.1	4315621	4316286	R	KEGG: pna:Pnap_0481 DNA polymerase III subunit epsilon; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; Exonuclease RNase T and DNA polymerase III	complement(4315621..4316286)	Alicycliphilus denitrificans K601	10485203
YP_004389970.1	CDS	Alide2_4137	NC_015422.1	4316283	4318097	R	KEGG: dac:Daci_5960 CBS domain-containing protein; PFAM: Domain of unknown function DUF294, nucleotidyltransferase putative; Cystathionine beta-synthase, core; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; SMART: Cystathionine beta-synthase, core; Cyclic nucleotide-binding domain; cyclic nucleotide-binding protein	complement(4316283..4318097)	Alicycliphilus denitrificans K601	10485204
YP_004389971.1	CDS	Alide2_4138	NC_015422.1	4318120	4318761	R	PFAM: DSBA-like thioredoxin domain; KEGG: dac:Daci_5961 DsbA oxidoreductase; DSBA oxidoreductase	complement(4318120..4318761)	Alicycliphilus denitrificans K601	10485205
YP_004389972.1	CDS	Alide2_4139	NC_015422.1	4318758	4319018	R	KEGG: dia:Dtpsy_3035 protein of unknown function DUF1289; manually curated; PFAM: Protein of unknown function DUF1289; hypothetical protein	complement(4318758..4319018)	Alicycliphilus denitrificans K601	10485206
YP_004389973.1	CDS	Alide2_4140	NC_015422.1	4319015	4319509	R	PFAM: YbaK/aminoacyl-tRNA synthetase-associated domain; KEGG: aav:Aave_4348 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated region	complement(4319015..4319509)	Alicycliphilus denitrificans K601	10485207
YP_004389974.1	CDS	Alide2_4141	NC_015422.1	4319515	4320429	R	KEGG: ajs:Ajs_3757 hydroxymethylglutaryl-CoA lyase; PFAM: Pyruvate carboxyltransferase; hydroxymethylglutaryl-CoA lyase	complement(4319515..4320429)	Alicycliphilus denitrificans K601	10485208
YP_004389975.1	CDS	Alide2_4142	NC_015422.1	4320715	4321635	R	KEGG: dia:Dtpsy_3039 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; hydroxypyruvate reductase	complement(4320715..4321635)	Alicycliphilus denitrificans K601	10485209
YP_004389976.1	CDS	Alide2_4143	NC_015422.1	4321673	4323694	R	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Carbamoyl-phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; Biotin/lipoyl attachment; KEGG: ajs:Ajs_3759 3-methylcrotonoyl-CoA carboxylase, alpha subunit; SMART: Biotin carboxylase, C-terminal; methylcrotonoyl-CoA carboxylase	complement(4321673..4323694)	Alicycliphilus denitrificans K601	10485210
YP_004389977.1	CDS	Alide2_4144	NC_015422.1	4323695	4324414	R	KEGG: dia:Dtpsy_3041 putative transmembrane protein; putative transmembrane protein	complement(4323695..4324414)	Alicycliphilus denitrificans K601	10485211
YP_004389978.1	CDS	Alide2_4145	NC_015422.1	4324436	4325215	R	PFAM: Crotonase, core; KEGG: ajs:Ajs_3761 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(4324436..4325215)	Alicycliphilus denitrificans K601	10485212
YP_004389979.1	CDS	Alide2_4146	NC_015422.1	4325226	4326830	R	KEGG: dia:Dtpsy_3044 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; methylcrotonoyl-CoA carboxylase	complement(4325226..4326830)	Alicycliphilus denitrificans K601	10485213
YP_004389980.1	CDS	Alide2_4147	NC_015422.1	4326827	4328548	R	KEGG: ajs:Ajs_3764 AMP-binding domain protein; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(4326827..4328548)	Alicycliphilus denitrificans K601	10485214
YP_004389981.1	CDS	Alide2_4148	NC_015422.1	4328694	4329752	D	KEGG: dia:Dtpsy_3046 transcriptional regulator, AraC family; PFAM: HTH transcriptional regulator, AraC; SMART: Helix-turn-helix, AraC type, DNA binding domain; AraC family transcriptional regulator	4328694..4329752	Alicycliphilus denitrificans K601	10485215
YP_004389982.1	CDS	Alide2_4149	NC_015422.1	4329812	4330477	D	PFAM: Glutathione S-transferase, N-terminal; KEGG: ajs:Ajs_3767 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein	4329812..4330477	Alicycliphilus denitrificans K601	10485216
YP_004389983.1	CDS	Alide2_4150	NC_015422.1	4330565	4332178	D	KEGG: xtr:100491709 choline dehydrogenase-like; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; Choline dehydrogenase	4330565..4332178	Alicycliphilus denitrificans K601	10485217
YP_004389984.1	CDS	Alide2_4151	NC_015422.1	4332324	4333523	D	PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_0291 extracellular ligand-binding receptor; extracellular ligand-binding receptor	4332324..4333523	Alicycliphilus denitrificans K601	10485218
YP_004389985.1	CDS	Alide2_4152	NC_015422.1	4333652	4334572	D	PFAM: ABC transporter permease; KEGG: axy:AXYL_06412 inner-membrane translocator 70; ABC transporter permease	4333652..4334572	Alicycliphilus denitrificans K601	10485219
YP_004389986.1	CDS	Alide2_4153	NC_015422.1	4334569	4336383	D	PFAM: ABC transporter-like; ABC transporter permease; KEGG: axy:AXYL_06411 inner-membrane translocator 69; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	4334569..4336383	Alicycliphilus denitrificans K601	10485220
YP_004389987.1	CDS	Alide2_4154	NC_015422.1	4336373	4337095	D	PFAM: ABC transporter-like; KEGG: axy:AXYL_06410 ABC transporter family protein 103; SMART: ATPase, AAA+ type, core; Fe(3+)-transporting ATPase	4336373..4337095	Alicycliphilus denitrificans K601	10485221
YP_004389988.1	CDS	Alide2_4155	NC_015422.1	4337263	4338873	D	KEGG: vei:Veis_0287 glucose-methanol-choline oxidoreductase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; Glucose-methanol-choline oxidoreductase, C-terminal; Choline dehydrogenase	4337263..4338873	Alicycliphilus denitrificans K601	10485222
YP_004389989.1	CDS	Alide2_4156	NC_015422.1	4338884	4340542	D	KEGG: ajs:Ajs_3769 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	4338884..4340542	Alicycliphilus denitrificans K601	10485223
YP_004389990.1	CDS	Alide2_4157	NC_015422.1	4340572	4341960	R	KEGG: ctt:CtCNB1_3118 transcriptional regulator, GntR family; PFAM: Aminotransferase, class I/classII; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(4340572..4341960)	Alicycliphilus denitrificans K601	10485224
YP_004389991.1	CDS	Alide2_4158	NC_015422.1	4342025	4343317	D	TIGRFAM: Hydroxymethylglutaryl-CoA reductase, bacterial type; KEGG: xtr:100492358 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like; PFAM: Hydroxymethylglutaryl-CoA reductase, class I/II; hydroxymethylglutaryl-CoA reductase	4342025..4343317	Alicycliphilus denitrificans K601	10485225
YP_004389992.1	CDS	Alide2_4159	NC_015422.1	4343377	4344039	R	KEGG: dia:Dtpsy_3047 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase	complement(4343377..4344039)	Alicycliphilus denitrificans K601	10485226
YP_004389993.1	CDS	Alide2_4160	NC_015422.1	4344036	4346075	R	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold-3; KEGG: dia:Dtpsy_3048 diguanylate cyclase with PAS/PAC sensor; SMART: Diguanylate cyclase, predicted; PAS/PAC sensor-containing diguanylate cyclase	complement(4344036..4346075)	Alicycliphilus denitrificans K601	10485227
YP_004389994.1	CDS	Alide2_4161	NC_015422.1	4346181	4347692	D	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: dia:Dtpsy_3049 extracellular solute-binding protein family 5; ABC transporter substrate-binding protein	4346181..4347692	Alicycliphilus denitrificans K601	10485228
YP_004389995.1	CDS	Alide2_4162	NC_015422.1	4347940	4348731	D	KEGG: rfr:Rfer_2484 hypothetical protein; hypothetical protein	4347940..4348731	Alicycliphilus denitrificans K601	10485229
YP_004389996.1	CDS	Alide2_4163	NC_015422.1	4348734	4351694	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; KEGG: rfr:Rfer_2485 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase	complement(4348734..4351694)	Alicycliphilus denitrificans K601	10485230
YP_004389997.1	CDS	Alide2_4164	NC_015422.1	4351827	4352222	R	KEGG: dac:Daci_5982 hypothetical protein; hypothetical protein	complement(4351827..4352222)	Alicycliphilus denitrificans K601	10485231
YP_004389998.1	CDS	Alide2_4165	NC_015422.1	4352219	4352920	R	KEGG: pna:Pnap_0218 hypothetical protein; hypothetical protein	complement(4352219..4352920)	Alicycliphilus denitrificans K601	10485232
YP_004389999.1	CDS	Alide2_4166	NC_015422.1	4353014	4353508	D	PFAM: Protein of unknown function DUF421; KEGG: aav:Aave_4363 hypothetical protein; hypothetical protein	4353014..4353508	Alicycliphilus denitrificans K601	10485233
YP_004390000.1	CDS	Alide2_4167	NC_015422.1	4353789	4354604	D	PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; KEGG: axy:AXYL_04090 transcriptional regulator family protein 21; IclR family transcriptional regulator	4353789..4354604	Alicycliphilus denitrificans K601	10485234
YP_004390001.1	CDS	Alide2_4168	NC_015422.1	4354601	4355305	D	KEGG: aav:Aave_4364 peptidase E; PFAM: Peptidase S51; Dipeptidase E	4354601..4355305	Alicycliphilus denitrificans K601	10485235
YP_004390002.1	CDS	Alide2_4169	NC_015422.1	4355336	4356238	D	PFAM: Protein of unknown function DUF1177; KEGG: axy:AXYL_04088 hypothetical protein; hypothetical protein	4355336..4356238	Alicycliphilus denitrificans K601	10485236
YP_004390003.1	CDS	Alide2_4170	NC_015422.1	4356235	4356912	D	PFAM: Uncharacterised protein family AroM; KEGG: axy:AXYL_04087 AroM family protein; AroM family protein	4356235..4356912	Alicycliphilus denitrificans K601	10485237
YP_004390004.1	CDS	Alide2_4171	NC_015422.1	4356947	4357927	D	KEGG: axy:AXYL_04086 extra-cytoplasmic solute receptor family protein 94; extra-cytoplasmic solute receptor family protein	4356947..4357927	Alicycliphilus denitrificans K601	10485238
YP_004390005.1	CDS	Alide2_4174	NC_015422.1	4359305	4360435	R	KEGG: ajs:Ajs_3774 acyl-CoA dehydrogenase domain-containing protein; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(4359305..4360435)	Alicycliphilus denitrificans K601	10485241
YP_004390006.1	CDS	Alide2_4175	NC_015422.1	4360459	4361127	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3053 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR	complement(4360459..4361127)	Alicycliphilus denitrificans K601	10485242
YP_004390007.1	CDS	Alide2_4176	NC_015422.1	4361197	4362387	R	TIGRFAM: Thiolase; KEGG: ctt:CtCNB1_0487 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	complement(4361197..4362387)	Alicycliphilus denitrificans K601	10485243
YP_004390008.1	CDS	Alide2_4177	NC_015422.1	4362384	4364210	R	HAMAP: Isocitrate dehydrogenase kinasephosphatase; KEGG: ajs:Ajs_3777 bifunctional isocitrate dehydrogenase kinase/phosphatase protein; PFAM: Isocitrate dehydrogenase kinasephosphatase; isocitrate dehydrogenase kinase/phosphatase	complement(4362384..4364210)	Alicycliphilus denitrificans K601	10485244
YP_004390009.1	CDS	Alide2_4178	NC_015422.1	4364263	4364928	R	PFAM: Carbonic anhydrase; KEGG: dia:Dtpsy_3056 carbonate dehydratase; SMART: Carbonic anhydrase; carbonate dehydratase	complement(4364263..4364928)	Alicycliphilus denitrificans K601	10485245
YP_004390010.1	CDS	Alide2_4179	NC_015422.1	4364982	4366172	R	KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; Isovaleryl-CoA dehydrogenase	complement(4364982..4366172)	Alicycliphilus denitrificans K601	10485246
YP_004390011.1	CDS	Alide2_4180	NC_015422.1	4366312	4366719	R	KEGG: dia:Dtpsy_3058 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator	complement(4366312..4366719)	Alicycliphilus denitrificans K601	10485247
YP_004390012.1	CDS	Alide2_4181	NC_015422.1	4372630	4374516	D	PFAM: ABC transporter-like; KEGG: ajs:Ajs_3785 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	4372630..4374516	Alicycliphilus denitrificans K601	10485253
YP_004390013.1	CDS	Alide2_4182	NC_015422.1	4374520	4375629	R	PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; Signal transduction response regulator, receiver domain; KEGG: dia:Dtpsy_3060 response regulator receiver modulated CheB methylesterase; SMART: Signal transduction response regulator, receiver domain; response regulator receiver modulated CheB methylesterase	complement(4374520..4375629)	Alicycliphilus denitrificans K601	10485254
YP_004390014.1	CDS	Alide2_4183	NC_015422.1	4375676	4376413	R	KEGG: ajs:Ajs_3787 chemoreceptor glutamine deamidase CheD; PFAM: Chemoreceptor glutamine deamidase CheD; CheD	complement(4375676..4376413)	Alicycliphilus denitrificans K601	10485255
YP_004390015.1	CDS	Alide2_4184	NC_015422.1	4376430	4377344	R	PFAM: MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal; MCP methyltransferase, CheR-type, all-alpha domain, N-terminal; KEGG: dia:Dtpsy_3062 MCP methyltransferase, CheR-type; SMART: MCP methyltransferase, CheR-type; MCP methyltransferase, CheR-type	complement(4376430..4377344)	Alicycliphilus denitrificans K601	10485256
YP_004390016.1	CDS	Alide2_4185	NC_015422.1	4377344	4377826	R	KEGG: dia:Dtpsy_3063 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; CheW protein	complement(4377344..4377826)	Alicycliphilus denitrificans K601	10485257
YP_004390017.1	CDS	Alide2_4186	NC_015422.1	4377861	4379960	R	KEGG: ajs:Ajs_3790 CheA signal transduction histidine kinases; PFAM: CheW-like protein; ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup, homodimeric; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; SMART: CheW-like protein; Signal transduction histidine kinase, phosphotransfer (Hpt) domain; ATPase-like, ATP-binding domain; CheA signal transduction histidine kinase	complement(4377861..4379960)	Alicycliphilus denitrificans K601	10485258
YP_004390018.1	CDS	Alide2_4187	NC_015422.1	4380017	4380379	R	KEGG: dia:Dtpsy_3065 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	complement(4380017..4380379)	Alicycliphilus denitrificans K601	10485259
YP_004390019.1	CDS	Alide2_4188	NC_015422.1	4380439	4380885	R	KEGG: dia:Dtpsy_3066 hypothetical protein; hypothetical protein	complement(4380439..4380885)	Alicycliphilus denitrificans K601	10485260
YP_004390020.1	CDS	Alide2_4189	NC_015422.1	4380959	4382080	D	KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; ATPase-like, ATP-binding domain; response regulator receiver sensor signal transduction histidine kinase	4380959..4382080	Alicycliphilus denitrificans K601	10485261
YP_004390021.1	CDS	Alide2_4190	NC_015422.1	4382077	4382706	D	KEGG: dia:Dtpsy_3068 two component transcriptional regulator, LuxR family; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	4382077..4382706	Alicycliphilus denitrificans K601	10485262
YP_004390022.1	CDS	Alide2_4191	NC_015422.1	4382791	4383555	R	KEGG: ajs:Ajs_3795 flagellar biosynthetic protein FliR; TIGRFAM: Flagellar biosynthesis protein FliR; PFAM: Type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR	complement(4382791..4383555)	Alicycliphilus denitrificans K601	10485263
YP_004390023.1	CDS	Alide2_4192	NC_015422.1	4383552	4383821	R	KEGG: ajs:Ajs_3796 flagellar biosynthetic protein FliQ; TIGRFAM: Flagellar biosynthesis protein FliQ; PFAM: Bacterial export protein FliQ, family 3; flagellar biosynthetic protein FliQ	complement(4383552..4383821)	Alicycliphilus denitrificans K601	10485264
YP_004390024.1	CDS	Alide2_4193	NC_015422.1	4383832	4384587	R	KEGG: ajs:Ajs_3797 flagellar biosynthesis protein FliP; TIGRFAM: Flagellar transport protein FliP; PFAM: Type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP	complement(4383832..4384587)	Alicycliphilus denitrificans K601	10485265
YP_004390025.1	CDS	Alide2_4194	NC_015422.1	4384580	4384948	R	PFAM: Flagellar biosynthesis protein, FliO; KEGG: dia:Dtpsy_3072 flagellar biosynthesis protein FliO; flagellar biosynthesis protein, FliO	complement(4384580..4384948)	Alicycliphilus denitrificans K601	10485266
YP_004390026.1	CDS	Alide2_4195	NC_015422.1	4384932	4385387	R	KEGG: dia:Dtpsy_3073 flagellar motor switch protein FliN; TIGRFAM: Flagellar motor switch FliN; PFAM: Surface presentation of antigen (SpoA); flagellar motor switch protein FliN	complement(4384932..4385387)	Alicycliphilus denitrificans K601	10485267
YP_004390027.1	CDS	Alide2_4196	NC_015422.1	4385377	4386381	R	KEGG: dia:Dtpsy_3074 flagellar motor switch protein FliM; TIGRFAM: Flagellar motor switch protein FliM; PFAM: Flagellar motor switch protein FliM; Surface presentation of antigen (SpoA); flagellar motor switch protein FliM	complement(4385377..4386381)	Alicycliphilus denitrificans K601	10485268
YP_004390028.1	CDS	Alide2_4197	NC_015422.1	4386388	4386963	R	PFAM: Flagellar basal body-associated protein FliL; KEGG: dia:Dtpsy_3075 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL	complement(4386388..4386963)	Alicycliphilus denitrificans K601	10485269
YP_004390029.1	CDS	Alide2_4198	NC_015422.1	4387129	4388496	R	PFAM: Flagellar hook-length control protein-like, C-terminal domain; KEGG: ajs:Ajs_3802 flagellar hook-length control protein; flagellar hook-length control protein-like protein	complement(4387129..4388496)	Alicycliphilus denitrificans K601	10485270
YP_004390030.1	CDS	Alide2_4199	NC_015422.1	4388499	4388963	R	KEGG: dia:Dtpsy_3077 flagellar export protein FliJ; TIGRFAM: Flagellar export FliJ; PFAM: Flagellar export FliJ; flagellar export protein FliJ	complement(4388499..4388963)	Alicycliphilus denitrificans K601	10485271
YP_004390031.1	CDS	Alide2_4200	NC_015422.1	4389015	4390418	R	SMART: ATPase, AAA+ type, core; TIGRFAM: Flagellar export ATPase, FliI, clade 1; ATPase, type III secretion system, FliI/YscN; KEGG: dia:Dtpsy_3078 ATPase FliI/YscN; PFAM: ATPase, alpha/beta subunit, nucleotide-binding domain; flagellar protein export ATPase FliI	complement(4389015..4390418)	Alicycliphilus denitrificans K601	10485272
YP_004390032.1	CDS	Alide2_4201	NC_015422.1	4390408	4391133	R	PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; KEGG: dia:Dtpsy_3079 flagellar assembly protein FliH; flagellar assembly protein FliH/type III secretion system HrpE	complement(4390408..4391133)	Alicycliphilus denitrificans K601	10485273
YP_004390033.1	CDS	Alide2_4202	NC_015422.1	4391155	4392150	R	KEGG: dia:Dtpsy_3080 flagellar motor switch protein FliG; TIGRFAM: Flagellar motor switch protein FliG; PFAM: Flagellar motor switch protein FliG, C-terminal; flagellar motor switch protein FliG	complement(4391155..4392150)	Alicycliphilus denitrificans K601	10485274
YP_004390034.1	CDS	Alide2_4203	NC_015422.1	4392181	4393875	R	KEGG: dia:Dtpsy_3081 flagellar M-ring protein FliF; TIGRFAM: Flagellar FliF M-ring protein; PFAM: Secretory protein YscJ/FliF; Flagellar M-ring C-terminal; flagellar M-ring protein FliF	complement(4392181..4393875)	Alicycliphilus denitrificans K601	10485275
YP_004390035.1	CDS	Alide2_4204	NC_015422.1	4394051	4394362	D	KEGG: dia:Dtpsy_3082 flagellar hook-basal body complex subunit FliE; TIGRFAM: Flagellar hook-basal body complex protein FliE; PFAM: Flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE	4394051..4394362	Alicycliphilus denitrificans K601	10485276
YP_004390036.1	CDS	Alide2_4205	NC_015422.1	4394578	4394877	R	PFAM: Flagellar export chaperone, FliT; KEGG: dia:Dtpsy_3083 flagellar protein FliT; flagellar export chaperone	complement(4394578..4394877)	Alicycliphilus denitrificans K601	10485277
YP_004390037.1	CDS	Alide2_4206	NC_015422.1	4394881	4395321	R	KEGG: dia:Dtpsy_3084 flagellar protein FliS; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS; flagellar protein FliS	complement(4394881..4395321)	Alicycliphilus denitrificans K601	10485278
YP_004390038.1	CDS	Alide2_4207	NC_015422.1	4395388	4396833	R	PFAM: Flagellar hook-associated 2, C-terminal; Flagellar hook-associated protein 2, N-terminal; Flagellin hook, IN motif; KEGG: aav:Aave_4399 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein	complement(4395388..4396833)	Alicycliphilus denitrificans K601	10485279
YP_004390039.1	CDS	Alide2_4208	NC_015422.1	4397066	4398526	R	PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4400 flagellin domain-containing protein; flagellin domain-containing protein	complement(4397066..4398526)	Alicycliphilus denitrificans K601	10485280
YP_004390040.1	CDS	Alide2_4209	NC_015422.1	4398861	4400330	D	PFAM: Flagellin, D0/D1 domain; Flagellin hook, IN motif; KEGG: aav:Aave_4401 flagellin domain-containing protein; flagellin domain-containing protein	4398861..4400330	Alicycliphilus denitrificans K601	10485281
YP_004390041.1	CDS	Alide2_4210	NC_015422.1	4400492	4405501	R	KEGG: psa:PST_1402 hypothetical protein; manually curated; PFAM: Glycosyl transferase, family 2; Capsule polysaccharide biosynthesis; family 2 glycosyl transferase	complement(4400492..4405501)	Alicycliphilus denitrificans K601	10485282
YP_004390042.1	CDS	Alide2_4211	NC_015422.1	4405501	4406790	R	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; Acylneuraminate cytidylyltransferase; KEGG: syd:Syncc9605_2247 demethylmenaquinone methyltransferase-like; Dimethylmenaquinone methyltransferase	complement(4405501..4406790)	Alicycliphilus denitrificans K601	10485283
YP_004390043.1	CDS	Alide2_4212	NC_015422.1	4407385	4408245	D	KEGG: dia:Dtpsy_3088 MotA/TolQ/ExbB proton channel; TIGRFAM: Flagellar motor stator, MotA; PFAM: MotA/TolQ/ExbB proton channel; flagellar motor stator protein MotA	4407385..4408245	Alicycliphilus denitrificans K601	10485284
YP_004390044.1	CDS	Alide2_4213	NC_015422.1	4408264	4409199	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3089 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	4408264..4409199	Alicycliphilus denitrificans K601	10485285
YP_004390045.1	CDS	Alide2_4214	NC_015422.1	4409269	4409655	D	KEGG: dia:Dtpsy_3090 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; response regulator receiver protein	4409269..4409655	Alicycliphilus denitrificans K601	10485286
YP_004390046.1	CDS	Alide2_4215	NC_015422.1	4409658	4410290	D	PFAM: Chemotaxis phosphatase, CheZ; KEGG: ajs:Ajs_3818 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ	4409658..4410290	Alicycliphilus denitrificans K601	10485287
YP_004390047.1	CDS	Alide2_4216	NC_015422.1	4410387	4411547	D	PFAM: Type III secretion exporter; KEGG: dia:Dtpsy_3092 type III secretion exporter; type III secretion exporter	4410387..4411547	Alicycliphilus denitrificans K601	10485288
YP_004390048.1	CDS	Alide2_4217	NC_015422.1	4411544	4413634	D	KEGG: dia:Dtpsy_3093 flagellar biosynthesis protein FlhA; TIGRFAM: Flagellar biosynthesis protein FlhA; PFAM: Type III secretion system FHIPEP; flagellar biosynthesis protein FlhA	4411544..4413634	Alicycliphilus denitrificans K601	10485289
YP_004390049.1	CDS	Alide2_4218	NC_015422.1	4413631	4415193	D	TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: ajs:Ajs_3821 GTP-binding signal recognition particle; SMART: ATPase, AAA+ type, core; flagellar biosynthetic protein FlhF	4413631..4415193	Alicycliphilus denitrificans K601	10485290
YP_004390050.1	CDS	Alide2_4219	NC_015422.1	4415183	4415986	D	KEGG: ajs:Ajs_3822 hypothetical protein; hypothetical protein	4415183..4415986	Alicycliphilus denitrificans K601	10485291
YP_004390051.1	CDS	Alide2_4220	NC_015422.1	4415992	4416708	D	KEGG: dia:Dtpsy_3096 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma 28 subunit FliA/WhiG	4415992..4416708	Alicycliphilus denitrificans K601	10485292
YP_004390052.1	CDS	Alide2_4221	NC_015422.1	4416838	4417176	R	KEGG: ajs:Ajs_3824 hypothetical protein; hypothetical protein	complement(4416838..4417176)	Alicycliphilus denitrificans K601	10485293
YP_004390053.1	CDS	Alide2_4222	NC_015422.1	4417212	4417535	R	KEGG: dia:Dtpsy_3098 anti-sigma-28 factor, FlgM; TIGRFAM: Anti-sigma-28 factor, FlgM; PFAM: Anti-sigma-28 factor, FlgM; flagellar biosynthesis anti-sigma factor protein FlgM	complement(4417212..4417535)	Alicycliphilus denitrificans K601	10485294
YP_004390054.1	CDS	Alide2_4223	NC_015422.1	4417629	4418375	R	TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; KEGG: dia:Dtpsy_3099 flagella basal body P-ring formation protein FlgA; SMART: SAF domain; flagella basal body P-ring formation protein FlgA	complement(4417629..4418375)	Alicycliphilus denitrificans K601	10485295
YP_004390055.1	CDS	Alide2_4224	NC_015422.1	4418558	4418974	D	KEGG: ajs:Ajs_3827 flagellar basal-body rod protein FlgB; TIGRFAM: Flagellar basal-body rod protein FlgB; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgB	4418558..4418974	Alicycliphilus denitrificans K601	10485296
YP_004390056.1	CDS	Alide2_4225	NC_015422.1	4418986	4419390	D	KEGG: dia:Dtpsy_3101 flagellar basal-body rod protein FlgC; TIGRFAM: Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgC	4418986..4419390	Alicycliphilus denitrificans K601	10485297
YP_004390057.1	CDS	Alide2_4226	NC_015422.1	4419406	4420068	D	PFAM: Flagellar hook capping protein; KEGG: dia:Dtpsy_3102 flagellar hook capping protein; flagellar hook capping protein	4419406..4420068	Alicycliphilus denitrificans K601	10485298
YP_004390058.1	CDS	Alide2_4227	NC_015422.1	4420105	4421385	D	KEGG: aav:Aave_4423 hypothetical protein; TIGRFAM: Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body FlaE; Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar hook-basal body protein	4420105..4421385	Alicycliphilus denitrificans K601	10485299
YP_004390059.1	CDS	Alide2_4228	NC_015422.1	4421411	4422151	D	KEGG: dia:Dtpsy_3104 flagellar basal-body rod protein FlgF; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgF	4421411..4422151	Alicycliphilus denitrificans K601	10485300
YP_004390060.1	CDS	Alide2_4229	NC_015422.1	4422176	4422958	D	KEGG: dia:Dtpsy_3105 flagellar basal-body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar basal-body rod protein FlgG	4422176..4422958	Alicycliphilus denitrificans K601	10485301
YP_004390061.1	CDS	Alide2_4230	NC_015422.1	4422973	4423656	D	PFAM: Flagellar L-ring protein; KEGG: aav:Aave_4426 flagellar L-ring protein; flagellar L-ring protein	4422973..4423656	Alicycliphilus denitrificans K601	10485302
YP_004390062.1	CDS	Alide2_4231	NC_015422.1	4423851	4424996	D	PFAM: Flagellar P-ring protein; KEGG: aav:Aave_4428 flagellar basal body P-ring protein; flagellar P-ring protein	4423851..4424996	Alicycliphilus denitrificans K601	10485303
YP_004390063.1	CDS	Alide2_4232	NC_015422.1	4424996	4425934	D	KEGG: ajs:Ajs_3836 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: Flagellar protein FlgJ type-2; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ, N-terminal; flagellar rod assembly protein/muramidase FlgJ	4424996..4425934	Alicycliphilus denitrificans K601	10485304
YP_004390064.1	CDS	Alide2_4233	NC_015422.1	4425946	4427928	D	KEGG: dia:Dtpsy_3110 flagellar hook-associated protein FlgK; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; flagellar hook-associated protein FlgK	4425946..4427928	Alicycliphilus denitrificans K601	10485305
YP_004390065.1	CDS	Alide2_4234	NC_015422.1	4427930	4429180	D	KEGG: aav:Aave_4431 flagellar hook-associated protein 3; TIGRFAM: Flagellar hook-associated protein 3; PFAM: Flagellin, D0/D1 domain; flagellar hook-associated protein 3	4427930..4429180	Alicycliphilus denitrificans K601	10485306
YP_004390066.1	CDS	Alide2_4235	NC_015422.1	4429257	4430471	D	PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein; putative signal transduction protein	4429257..4430471	Alicycliphilus denitrificans K601	10485307
YP_004390067.1	CDS	Alide2_4236	NC_015422.1	4430617	4431612	D	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: ajs:Ajs_3841 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase NPD	4430617..4431612	Alicycliphilus denitrificans K601	10485308
YP_004390068.1	CDS	Alide2_4237	NC_015422.1	4431658	4433097	R	KEGG: dia:Dtpsy_3115 transcriptional regulator, GntR family with aminotransferase domain; PFAM: HTH transcriptional regulator, GntR; Aminotransferase, class I/classII; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(4431658..4433097)	Alicycliphilus denitrificans K601	10485309
YP_004390069.1	CDS	Alide2_4238	NC_015422.1	4433217	4433816	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3843 hypothetical protein; lysine exporter protein LysE/YggA	4433217..4433816	Alicycliphilus denitrificans K601	10485310
YP_004390070.1	CDS	Alide2_4239	NC_015422.1	4433813	4434745	D	PFAM: Drug/metabolite transporter; KEGG: vap:Vapar_0746 protein of unknown function DUF6 transmembrane; hypothetical protein	4433813..4434745	Alicycliphilus denitrificans K601	10485311
YP_004390071.1	CDS	Alide2_4240	NC_015422.1	4434860	4436041	D	PFAM: Aminotransferase, class I/classII; KEGG: ajs:Ajs_3845 GntR family transcriptional regulator; GntR family transcriptional regulator	4434860..4436041	Alicycliphilus denitrificans K601	10485312
YP_004390072.1	CDS	Alide2_4241	NC_015422.1	4436056	4436931	D	KEGG: dia:Dtpsy_3119 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein PhzF family	4436056..4436931	Alicycliphilus denitrificans K601	10485313
YP_004390073.1	CDS	Alide2_4242	NC_015422.1	4436928	4437902	D	KEGG: dia:Dtpsy_3120 hypothetical protein; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine ammonia-lyase	4436928..4437902	Alicycliphilus denitrificans K601	10485314
YP_004390074.1	CDS	Alide2_4243	NC_015422.1	4438099	4439187	D	KEGG: dia:Dtpsy_3121 hypothetical protein; hypothetical protein	4438099..4439187	Alicycliphilus denitrificans K601	10485315
YP_004390075.1	CDS	Alide2_4244	NC_015422.1	4439213	4440454	D	PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_3122 extracellular ligand-binding receptor; extracellular ligand-binding receptor	4439213..4440454	Alicycliphilus denitrificans K601	10485316
YP_004390076.1	CDS	Alide2_4245	NC_015422.1	4440451	4441578	D	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dia:Dtpsy_3123 short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase	4440451..4441578	Alicycliphilus denitrificans K601	10485317
YP_004390077.1	CDS	Alide2_4246	NC_015422.1	4441608	4442321	D	KEGG: dia:Dtpsy_3124 phosphoglycerate mutase; PFAM: Histidine phosphatase superfamily, clade-1; SMART: Histidine phosphatase superfamily, clade-1; phosphoglycerate mutase	4441608..4442321	Alicycliphilus denitrificans K601	10485318
YP_004390078.1	CDS	Alide2_4247	NC_015422.1	4442312	4443502	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: pmy:Pmen_1813 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	complement(4442312..4443502)	Alicycliphilus denitrificans K601	10485319
YP_004390079.1	CDS	Alide2_4248	NC_015422.1	4443578	4444081	R	PFAM: GLE1, N-terminal, bacteria; KEGG: vap:Vapar_4773 protein of unknown function DUF461; nuclear export factor GLE1	complement(4443578..4444081)	Alicycliphilus denitrificans K601	10485320
YP_004390080.1	CDS	Alide2_4249	NC_015422.1	4444105	4446423	R	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: ctt:CtCNB1_0607 TonB-dependent receptor; TonB-dependent receptor	complement(4444105..4446423)	Alicycliphilus denitrificans K601	10485321
YP_004390081.1	CDS	Alide2_4250	NC_015422.1	4446583	4446930	R	KEGG: vap:Vapar_2119 hypothetical protein; hypothetical protein	complement(4446583..4446930)	Alicycliphilus denitrificans K601	10485322
YP_004390082.1	CDS	Alide2_4251	NC_015422.1	4447026	4447883	R	PFAM: Creatininase; KEGG: dia:Dtpsy_3125 creatininase; Creatininase	complement(4447026..4447883)	Alicycliphilus denitrificans K601	10485323
YP_004390083.1	CDS	Alide2_4252	NC_015422.1	4447900	4448880	R	KEGG: dac:Daci_0588 hypothetical protein; hypothetical protein	complement(4447900..4448880)	Alicycliphilus denitrificans K601	10485324
YP_004390084.1	CDS	Alide2_4253	NC_015422.1	4449161	4451263	D	KEGG: dia:Dtpsy_3127 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; protein-disulfide reductase	4449161..4451263	Alicycliphilus denitrificans K601	10485325
YP_004390085.1	CDS	Alide2_4254	NC_015422.1	4451283	4451879	D	PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; KEGG: vap:Vapar_0729 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen	4451283..4451879	Alicycliphilus denitrificans K601	10485326
YP_004390086.1	CDS	Alide2_4255	NC_015422.1	4451916	4452662	R	PFAM: Protein of unknown function DUF81; KEGG: har:HEAR3236 hypothetical protein; hypothetical protein	complement(4451916..4452662)	Alicycliphilus denitrificans K601	10485327
YP_004390087.1	CDS	Alide2_4256	NC_015422.1	4452926	4453954	D	PFAM: Peptidoglycan binding-like; YkuD domain; KEGG: bpt:Bpet1138 peptidoglycan binding-like domain-containing protein; peptidoglycan-binding domain 1 protein	4452926..4453954	Alicycliphilus denitrificans K601	10485328
YP_004390088.1	CDS	Alide2_4257	NC_015422.1	4453997	4455115	D	TIGRFAM: Uroporphyrinogen decarboxylase HemE; KEGG: ajs:Ajs_3861 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase	4453997..4455115	Alicycliphilus denitrificans K601	10485329
YP_004390089.1	CDS	Alide2_4258	NC_015422.1	4455731	4457839	D	TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; KEGG: dia:Dtpsy_3135 primosomal protein N'; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; primosomal protein N'	4455731..4457839	Alicycliphilus denitrificans K601	10485330
YP_004390090.1	CDS	Alide2_4259	NC_015422.1	4457902	4459089	R	TIGRFAM: Thiolase; KEGG: dia:Dtpsy_0032 beta-ketothiolase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	complement(4457902..4459089)	Alicycliphilus denitrificans K601	10485331
YP_004390091.1	CDS	Alide2_4260	NC_015422.1	4459101	4459880	R	PFAM: Crotonase, core; KEGG: dac:Daci_0026 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase	complement(4459101..4459880)	Alicycliphilus denitrificans K601	10485332
YP_004390092.1	CDS	Alide2_4261	NC_015422.1	4459942	4461741	R	KEGG: dac:Daci_0027 AMP-dependent synthetase/ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(4459942..4461741)	Alicycliphilus denitrificans K601	10485333
YP_004390093.1	CDS	Alide2_4262	NC_015422.1	4461738	4462559	R	KEGG: xtr:100489501 high-affinity branched-chain amino acid transport ATP-binding protein livF-like; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	complement(4461738..4462559)	Alicycliphilus denitrificans K601	10485334
YP_004390094.1	CDS	Alide2_4263	NC_015422.1	4462568	4463749	R	PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_0029 extracellular ligand-binding receptor; extracellular ligand-binding receptor	complement(4462568..4463749)	Alicycliphilus denitrificans K601	10485335
YP_004390095.1	CDS	Alide2_4264	NC_015422.1	4463761	4464798	R	PFAM: ABC transporter permease; KEGG: rfr:Rfer_4064 inner-membrane translocator; ABC transporter permease	complement(4463761..4464798)	Alicycliphilus denitrificans K601	10485336
YP_004390096.1	CDS	Alide2_4265	NC_015422.1	4464798	4465679	R	PFAM: ABC transporter permease; KEGG: dac:Daci_0031 inner-membrane translocator; ABC transporter permease	complement(4464798..4465679)	Alicycliphilus denitrificans K601	10485337
YP_004390097.1	CDS	Alide2_4266	NC_015422.1	4465676	4466530	R	PFAM: ABC transporter-like; KEGG: dac:Daci_0032 ABC transporter-like protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(4465676..4466530)	Alicycliphilus denitrificans K601	10485338
YP_004390098.1	CDS	Alide2_4267	NC_015422.1	4466664	4467371	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dac:Daci_0033 TetR family transcriptional regulator; TetR family transcriptional regulator	4466664..4467371	Alicycliphilus denitrificans K601	10485339
YP_004390099.1	CDS	Alide2_4268	NC_015422.1	4467366	4468370	R	PFAM: Auxin efflux carrier; KEGG: ajs:Ajs_3864 auxin efflux carrier; auxin efflux carrier	complement(4467366..4468370)	Alicycliphilus denitrificans K601	10485340
YP_004390100.1	CDS	Alide2_4269	NC_015422.1	4468473	4470533	D	PFAM: DNA helicase, UvrD/REP type; KEGG: dia:Dtpsy_3138 UvrD/REP helicase; UvrD/REP helicase	4468473..4470533	Alicycliphilus denitrificans K601	10485341
YP_004390101.1	CDS	Alide2_4270	NC_015422.1	4470539	4470964	D	manually curated; KEGG: dia:Dtpsy_3139 hypothetical protein; hypothetical protein	4470539..4470964	Alicycliphilus denitrificans K601	10485342
YP_004390102.1	CDS	Alide2_4271	NC_015422.1	4470961	4472130	D	KEGG: dia:Dtpsy_3140 phospholipase A1; PFAM: Phospholipase A1; phospholipase A(1)	4470961..4472130	Alicycliphilus denitrificans K601	10485343
YP_004390103.1	CDS	Alide2_4272	NC_015422.1	4472143	4473270	R	PFAM: Sulphatase-modifying factor; KEGG: axy:AXYL_03118 hypothetical protein; sulfatase-modifying factor protein	complement(4472143..4473270)	Alicycliphilus denitrificans K601	10485344
YP_004390104.1	CDS	Alide2_4273	NC_015422.1	4473302	4475101	R	PFAM: Sulfatase; KEGG: axy:AXYL_03117 arylsulfatase; sulfatase	complement(4473302..4475101)	Alicycliphilus denitrificans K601	10485345
YP_004390105.1	CDS	Alide2_4274	NC_015422.1	4475199	4476140	R	KEGG: axy:AXYL_03122 metapyrocatechase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; catechol 2,3-dioxygenase	complement(4475199..4476140)	Alicycliphilus denitrificans K601	10485346
YP_004390106.1	CDS	Alide2_4275	NC_015422.1	4476170	4477933	R	KEGG: reu:Reut_B4679 monooxygenase, FAD-binding; PFAM: Monooxygenase, FAD-binding; 2,4-dichlorophenol 6-monooxygenase	complement(4476170..4477933)	Alicycliphilus denitrificans K601	10485347
YP_004390107.1	CDS	Alide2_4276	NC_015422.1	4477973	4478821	R	KEGG: reu:Reut_B4678 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase; PFAM: Fumarylacetoacetase, C-terminal-like; Ureidoglycolate lyase	complement(4477973..4478821)	Alicycliphilus denitrificans K601	10485348
YP_004390108.1	CDS	Alide2_4277	NC_015422.1	4478895	4480037	R	KEGG: vap:Vapar_4252 porin; porin	complement(4478895..4480037)	Alicycliphilus denitrificans K601	10485349
YP_004390109.1	CDS	Alide2_4278	NC_015422.1	4480234	4480932	D	KEGG: axy:AXYL_03119 GntR family regulatory protein 35; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	4480234..4480932	Alicycliphilus denitrificans K601	10485350
YP_004390110.1	CDS	Alide2_4279	NC_015422.1	4481178	4481564	D	KEGG: dia:Dtpsy_3141 hypothetical protein; hypothetical protein	4481178..4481564	Alicycliphilus denitrificans K601	10485351
YP_004390111.1	CDS	Alide2_4280	NC_015422.1	4481642	4482118	R	PFAM: UspA; KEGG: dia:Dtpsy_3142 UspA domain protein; UspA domain-containing protein	complement(4481642..4482118)	Alicycliphilus denitrificans K601	10485352
YP_004390112.1	CDS	Alide2_4281	NC_015422.1	4482178	4483350	D	PFAM: Queuine/other tRNA-ribosyltransferase; TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: dia:Dtpsy_3143 queuine tRNA-ribosyltransferase; Queuine tRNA-ribosyltransferase	4482178..4483350	Alicycliphilus denitrificans K601	10485353
YP_004390113.1	CDS	Alide2_4282	NC_015422.1	4483355	4484398	R	KEGG: dia:Dtpsy_3145 hypothetical protein; hypothetical protein	complement(4483355..4484398)	Alicycliphilus denitrificans K601	10485354
YP_004390114.1	CDS	Alide2_4283	NC_015422.1	4484521	4484934	D	TIGRFAM: PAS; PFAM: PAS fold; KEGG: dar:Daro_3803 PAS; SMART: PAS; PAC motif; PAS sensor protein	4484521..4484934	Alicycliphilus denitrificans K601	10485355
YP_004390115.1	CDS	Alide2_4284	NC_015422.1	4485379	4486209	D	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: dac:Daci_4431 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase NAD-binding protein	4485379..4486209	Alicycliphilus denitrificans K601	10485356
YP_004390116.1	CDS	Alide2_4285	NC_015422.1	4486259	4487227	D	KEGG: dac:Daci_4430 hypothetical protein; hypothetical protein	4486259..4487227	Alicycliphilus denitrificans K601	10485357
YP_004390117.1	CDS	Alide2_4286	NC_015422.1	4487346	4488326	D	KEGG: dac:Daci_5794 hypothetical protein; hypothetical protein	4487346..4488326	Alicycliphilus denitrificans K601	10485358
YP_004390118.1	CDS	Alide2_4287	NC_015422.1	4488380	4489054	D	PFAM: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; KEGG: dac:Daci_4429 hypothetical protein; Dimethylmenaquinone methyltransferase	4488380..4489054	Alicycliphilus denitrificans K601	10485359
YP_004390119.1	CDS	Alide2_4288	NC_015422.1	4489023	4489718	R	KEGG: bpt:Bpet0387 GntR family transcriptional regulator; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(4489023..4489718)	Alicycliphilus denitrificans K601	10485360
YP_004390120.1	CDS	Alide2_4289	NC_015422.1	4489738	4491681	R	KEGG: ajs:Ajs_3878 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; Major facilitator superfamily MFS-1; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	complement(4489738..4491681)	Alicycliphilus denitrificans K601	10485361
YP_004390121.1	CDS	Alide2_4290	NC_015422.1	4491871	4493751	D	SMART: ATPase, AAA+ type, core; TIGRFAM: Peptidase M41, FtsH; KEGG: pna:Pnap_0392 ATP-dependent metalloprotease FtsH; PFAM: ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; Peptidase M41; ATP-dependent metalloprotease FtsH	4491871..4493751	Alicycliphilus denitrificans K601	10485362
YP_004390122.1	CDS	Alide2_4291	NC_015422.1	4493840	4494406	D	PFAM: Phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative; phosphoribosyltransferase	4493840..4494406	Alicycliphilus denitrificans K601	10485363
YP_004390123.1	CDS	Alide2_4292	NC_015422.1	4494403	4495053	D	KEGG: rfr:Rfer_0394 phosphoribosyltransferase; phosphoribosyltransferase	4494403..4495053	Alicycliphilus denitrificans K601	10485364
YP_004390124.1	CDS	Alide2_4293	NC_015422.1	4495055	4495705	R	PFAM: Dienelactone hydrolase; KEGG: rfr:Rfer_0395 dienelactone hydrolase; dienelactone hydrolase	complement(4495055..4495705)	Alicycliphilus denitrificans K601	10485365
YP_004390125.1	CDS	Alide2_4294	NC_015422.1	4495713	4496696	R	KEGG: azo:azo0111 putative alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase, zinc-binding type 2; PFAM: Alcohol dehydrogenase GroES-like; zinc-binding alcohol dehydrogenase family protein	complement(4495713..4496696)	Alicycliphilus denitrificans K601	10485366
YP_004390126.1	CDS	Alide2_4295	NC_015422.1	4496911	4497900	D	KEGG: dia:Dtpsy_3156 hypothetical protein; hypothetical protein	4496911..4497900	Alicycliphilus denitrificans K601	10485367
YP_004390127.1	CDS	Alide2_4296	NC_015422.1	4497923	4499389	D	PFAM: Monooxygenase, FAD-binding; KEGG: ajs:Ajs_3884 FAD dependent oxidoreductase; monooxygenase FAD-binding protein	4497923..4499389	Alicycliphilus denitrificans K601	10485368
YP_004390128.1	CDS	Alide2_4297	NC_015422.1	4499386	4500492	D	KEGG: ajs:Ajs_3885 uncharacterized peroxidase-related enzyme; TIGRFAM: Uncharacterised peroxidase-related; Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein	4499386..4500492	Alicycliphilus denitrificans K601	10485369
YP_004390129.1	CDS	Alide2_4298	NC_015422.1	4500552	4501802	R	KEGG: dia:Dtpsy_3160 domain of unknown function DUF1745; PFAM: FIST domain, N-terminal; FIST C domain; SMART: FIST domain, N-terminal; hypothetical protein	complement(4500552..4501802)	Alicycliphilus denitrificans K601	10485370
YP_004390130.1	CDS	Alide2_4299	NC_015422.1	4501827	4502609	R	KEGG: dia:Dtpsy_3161 hypothetical protein; hypothetical protein	complement(4501827..4502609)	Alicycliphilus denitrificans K601	10485371
YP_004390131.1	CDS	Alide2_4300	NC_015422.1	4502837	4503268	D	PFAM: Histone-like bacterial DNA-binding protein; KEGG: dia:Dtpsy_3162 histone family protein DNA-binding protein; histone family protein DNA-binding protein	4502837..4503268	Alicycliphilus denitrificans K601	10485372
YP_004390132.1	CDS	Alide2_4301	NC_015422.1	4503326	4504078	R	KEGG: ajs:Ajs_3890 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase	complement(4503326..4504078)	Alicycliphilus denitrificans K601	10485373
YP_004390133.1	CDS	Alide2_4303	NC_015422.1	4504874	4506151	R	KEGG: neu:NE1310 HipA protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; HipA N-terminal domain-containing protein	complement(4504874..4506151)	Alicycliphilus denitrificans K601	10485375
YP_004390134.1	CDS	Alide2_4304	NC_015422.1	4506148	4506393	R	TIGRFAM: Transcription regulator, HipB-like; PFAM: Helix-turn-helix type 3; KEGG: neu:NE1311 helix-hairpin-helix DNA-binding motif-containing protein; SMART: Helix-turn-helix type 3; y4mF family transcriptional regulator	complement(4506148..4506393)	Alicycliphilus denitrificans K601	10485376
YP_004390135.1	CDS	Alide2_4307	NC_015422.1	4508028	4509158	D	KEGG: pol:Bpro_2745 putative transposase; putative transposase	4508028..4509158	Alicycliphilus denitrificans K601	10485379
YP_004390136.1	CDS	Alide2_4308	NC_015422.1	4509124	4509417	D	KEGG: pol:Bpro_2744 hypothetical protein; hypothetical protein	4509124..4509417	Alicycliphilus denitrificans K601	10485380
YP_004390137.1	CDS	Alide2_4309	NC_015422.1	4509693	4510898	R	PFAM: Transposase, IS4-like; KEGG: bvi:Bcep1808_6138 transposase, IS4 family protein; transposase IS4 family protein	complement(4509693..4510898)	Alicycliphilus denitrificans K601	10485381
YP_004390138.1	CDS	Alide2_4310	NC_015422.1	4510974	4511732	D	KEGG: pna:Pnap_4724 transposase; hypothetical protein	4510974..4511732	Alicycliphilus denitrificans K601	10485382
YP_004390139.1	CDS	Alide2_4311	NC_015422.1	4511761	4512651	R	KEGG: ajs:Ajs_2099 putative signal peptide; hypothetical protein	complement(4511761..4512651)	Alicycliphilus denitrificans K601	10485383
YP_004390140.1	CDS	Alide2_4312	NC_015422.1	4512753	4513505	R	KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; Cyclopentanol dehydrogenase	complement(4512753..4513505)	Alicycliphilus denitrificans K601	10485384
YP_004390141.1	CDS	Alide2_4313	NC_015422.1	4513578	4514492	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(4513578..4514492)	Alicycliphilus denitrificans K601	10485385
YP_004390142.1	CDS	Alide2_4314	NC_015422.1	4514489	4514812	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(4514489..4514812)	Alicycliphilus denitrificans K601	10485386
YP_004390143.1	CDS	Alide2_4315	NC_015422.1	4514972	4516498	D	PFAM: Integrase, catalytic core; KEGG: axy:AXYL_06593 integrase family protein 10; integrase catalytic subunit	4514972..4516498	Alicycliphilus denitrificans K601	10485387
YP_004390144.1	CDS	Alide2_4316	NC_015422.1	4516488	4517291	D	KEGG: axy:AXYL_06594 IstB-like ATP binding family protein 3; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein	4516488..4517291	Alicycliphilus denitrificans K601	10485388
YP_004390145.1	CDS	Alide2_4317	NC_015422.1	4517418	4517810	R	KEGG: azc:AZC_0960 cytochrome c; manually curated; PFAM: Cytochrome c, class I; cytochrome c class I	complement(4517418..4517810)	Alicycliphilus denitrificans K601	10485389
YP_004390146.1	CDS	Alide2_4318	NC_015422.1	4518046	4519785	R	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: cwo:Cwoe_1511 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein	complement(4518046..4519785)	Alicycliphilus denitrificans K601	10485390
YP_004390147.1	CDS	Alide2_4319	NC_015422.1	4519890	4520486	R	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G	complement(4519890..4520486)	Alicycliphilus denitrificans K601	10485391
YP_004390148.1	CDS	Alide2_4320	NC_015422.1	4520535	4523009	R	KEGG: sti:Sthe_2310 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein; PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; carbon-monoxide dehydrogenase	complement(4520535..4523009)	Alicycliphilus denitrificans K601	10485392
YP_004390149.1	CDS	Alide2_4321	NC_015422.1	4523006	4523503	R	KEGG: tro:trd_0578 aldehyde oxidase small subunit; PFAM: [2Fe-2S]-binding; Ferredoxin; carbon-monoxide dehydrogenase	complement(4523006..4523503)	Alicycliphilus denitrificans K601	10485393
YP_004390150.1	CDS	Alide2_4322	NC_015422.1	4523537	4524415	R	KEGG: sti:Sthe_2813 molybdopterin dehydrogenase FAD-binding protein; PFAM: Molybdopterin dehydrogenase, FAD-binding; carbon-monoxide dehydrogenase	complement(4523537..4524415)	Alicycliphilus denitrificans K601	10485394
YP_004390151.1	CDS	Alide2_4323	NC_015422.1	4524957	4525880	D	KEGG: cwo:Cwoe_3936 peptidase S15; peptidase S15	4524957..4525880	Alicycliphilus denitrificans K601	10485395
YP_004390152.1	CDS	Alide2_4324	NC_015422.1	4526102	4527013	D	KEGG: ctt:CtCNB1_3512 ATPase associated with various cellular; PFAM: ATPase, AAA-5; SMART: ATPase, AAA+ type, core; ATPase	4526102..4527013	Alicycliphilus denitrificans K601	10485396
YP_004390153.1	CDS	Alide2_4325	NC_015422.1	4527031	4527519	D	KEGG: dac:Daci_2252 VWA containing CoxE family protein; hypothetical protein	4527031..4527519	Alicycliphilus denitrificans K601	10485397
YP_004390154.1	CDS	Alide2_4326	NC_015422.1	4527537	4528088	D	PFAM: Carbon monoxide dehydrogenase subunit G; KEGG: pol:Bpro_0573 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G	4527537..4528088	Alicycliphilus denitrificans K601	10485398
YP_004390155.1	CDS	Alide2_4327	NC_015422.1	4528091	4529131	D	PFAM: XdhC- CoxI; KEGG: pol:Bpro_0572 hypothetical protein; XshC-Cox1 family protein	4528091..4529131	Alicycliphilus denitrificans K601	10485399
YP_004390156.1	CDS	Alide2_4328	NC_015422.1	4529131	4529805	D	KEGG: aeh:Mlg_1568 molybdenum cofactor cytidylyltransferase; molybdenum cofactor cytidylyltransferase	4529131..4529805	Alicycliphilus denitrificans K601	10485400
YP_004390157.1	CDS	Alide2_4331	NC_015422.1	4530134	4530856	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: cak:Caul_0225 TetR family transcriptional regulator; TetR family transcriptional regulator	complement(4530134..4530856)	Alicycliphilus denitrificans K601	10485403
YP_004390158.1	CDS	Alide2_4332	NC_015422.1	4530853	4531764	R	KEGG: cti:RALTA_B1677 conserved hypothetical protein; UPF0065; hypothetical protein	complement(4530853..4531764)	Alicycliphilus denitrificans K601	10485404
YP_004390159.1	CDS	Alide2_4333	NC_015422.1	4532155	4533081	D	KEGG: cwo:Cwoe_3936 peptidase S15; peptidase S15	4532155..4533081	Alicycliphilus denitrificans K601	10485405
YP_004390160.1	CDS	Alide2_4334	NC_015422.1	4533148	4534941	D	PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; KEGG: slo:Shew_2868 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein	4533148..4534941	Alicycliphilus denitrificans K601	10485406
YP_004390161.1	CDS	Alide2_4335	NC_015422.1	4534938	4537037	D	manually curated; KEGG: xtr:100493475 peroxisomal bifunctional enzyme-like; PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding; Crotonase, core; 3-hydroxyacyl-CoA dehydrogenase, C-terminal; 3-hydroxybutyryl-CoA epimerase	4534938..4537037	Alicycliphilus denitrificans K601	10485407
YP_004390162.1	CDS	Alide2_4336	NC_015422.1	4537034	4538221	D	TIGRFAM: Thiolase; KEGG: vap:Vapar_5357 acetyl-CoA acetyltransferase; PFAM: Thiolase, N-terminal; Thiolase, C-terminal; acetyl-CoA acetyltransferase	4537034..4538221	Alicycliphilus denitrificans K601	10485408
YP_004390163.1	CDS	Alide2_4337	NC_015422.1	4538218	4538991	D	KEGG: reu:Reut_C6403 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	4538218..4538991	Alicycliphilus denitrificans K601	10485409
YP_004390164.1	CDS	Alide2_4338	NC_015422.1	4538982	4540586	D	KEGG: psa:PST_1119 long-chain-fatty-acid--CoA ligase; PFAM: AMP-dependent synthetase/ligase; o-succinylbenzoate--CoA ligase	4538982..4540586	Alicycliphilus denitrificans K601	10485410
YP_004390165.1	CDS	Alide2_4339	NC_015422.1	4540583	4542118	D	PFAM: ABC transporter-like; KEGG: azc:AZC_1416 sugar ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	4540583..4542118	Alicycliphilus denitrificans K601	10485411
YP_004390166.1	CDS	Alide2_4340	NC_015422.1	4542120	4543064	D	PFAM: ABC transporter permease; KEGG: reu:Reut_B4134 inner-membrane translocator; ABC transporter permease	4542120..4543064	Alicycliphilus denitrificans K601	10485412
YP_004390167.1	CDS	Alide2_4341	NC_015422.1	4543061	4544011	D	PFAM: ABC transporter permease; KEGG: reu:Reut_B4135 inner-membrane translocator; ABC transporter permease	4543061..4544011	Alicycliphilus denitrificans K601	10485413
YP_004390168.1	CDS	Alide2_4342	NC_015422.1	4544051	4545031	D	PFAM: Periplasmic binding protein/LacI transcriptional regulator; KEGG: azc:AZC_1419 ABC transporter sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator	4544051..4545031	Alicycliphilus denitrificans K601	10485414
YP_004390169.1	CDS	Alide2_4344	NC_015422.1	4545748	4547127	D	PFAM: Transposase, IS4-like; KEGG: pol:Bpro_1661 IS4 family transposase; transposase IS4 family protein	4545748..4547127	Alicycliphilus denitrificans K601	10485416
YP_004390170.1	CDS	Alide2_4348	NC_015422.1	4550944	4551876	D	PFAM: Integrase, catalytic core, phage; KEGG: tmz:Tmz1t_0371 integrase family protein; integrase family protein	4550944..4551876	Alicycliphilus denitrificans K601	10485419
YP_004390171.1	CDS	Alide2_4349	NC_015422.1	4551873	4552868	D	PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; KEGG: tmz:Tmz1t_0370 integrase family protein; integrase family protein	4551873..4552868	Alicycliphilus denitrificans K601	10485420
YP_004390172.1	CDS	Alide2_4350	NC_015422.1	4553149	4554339	D	PFAM: Transposase, IS801/IS1294; KEGG: pol:Bpro_4805 putative transposase; transposase	4553149..4554339	Alicycliphilus denitrificans K601	10485421
YP_004390173.1	CDS	Alide2_4351	NC_015422.1	4554939	4555328	R	TIGRFAM: Ribosomal protein L17; HAMAP: Ribosomal protein L17; KEGG: dia:Dtpsy_0399 50S ribosomal protein L17; PFAM: Ribosomal protein L17; 50S ribosomal protein L17	complement(4554939..4555328)	Alicycliphilus denitrificans K601	10485423
YP_004390174.1	CDS	Alide2_4352	NC_015422.1	4555417	4556412	R	TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase, insert domain; DNA-directed RNA polymerase, dimerisation; KEGG: dia:Dtpsy_0398 DNA-directed RNA polymerase subunit alpha; SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha	complement(4555417..4556412)	Alicycliphilus denitrificans K601	10485424
YP_004390175.1	CDS	Alide2_4353	NC_015422.1	4556525	4557199	R	TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4/S9, N-terminal; RNA-binding S4; KEGG: aav:Aave_0625 30S ribosomal protein S4; SMART: RNA-binding S4; 30S ribosomal protein S4	complement(4556525..4557199)	Alicycliphilus denitrificans K601	10485425
YP_004390176.1	CDS	Alide2_4354	NC_015422.1	4557240	4557644	R	KEGG: aav:Aave_0624 30S ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; 30S ribosomal protein S11	complement(4557240..4557644)	Alicycliphilus denitrificans K601	10485426
YP_004390177.1	CDS	Alide2_4355	NC_015422.1	4557660	4558025	R	KEGG: dia:Dtpsy_0395 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13; 30S ribosomal protein S13	complement(4557660..4558025)	Alicycliphilus denitrificans K601	10485427
YP_004390178.1	CDS	Alide2_4356	NC_015422.1	4558049	4558162	R	TIGRFAM: Ribosomal protein L36; HAMAP: Ribosomal protein L36; KEGG: ctt:CtCNB1_4432 ribosomal protein L36; PFAM: Ribosomal protein L36; 50S ribosomal protein L36	complement(4558049..4558162)	Alicycliphilus denitrificans K601	10485428
YP_004390179.1	CDS	Alide2_4357	NC_015422.1	4558310	4559629	R	manually curated; TIGRFAM: SecY protein; KEGG: dia:Dtpsy_0393 preprotein translocase subunit SecY; PFAM: SecY protein; preprotein translocase subunit SecY	complement(4558310..4559629)	Alicycliphilus denitrificans K601	10485429
YP_004390180.1	CDS	Alide2_4358	NC_015422.1	4559653	4560084	R	KEGG: ctt:CtCNB1_4434 ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L18e/L15; 50S ribosomal protein L15	complement(4559653..4560084)	Alicycliphilus denitrificans K601	10485430
YP_004390181.1	CDS	Alide2_4359	NC_015422.1	4560095	4560277	R	KEGG: dia:Dtpsy_0391 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; 50S ribosomal protein L30	complement(4560095..4560277)	Alicycliphilus denitrificans K601	10485431
YP_004390182.1	CDS	Alide2_4360	NC_015422.1	4560290	4560811	R	KEGG: dia:Dtpsy_0390 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal; 30S ribosomal protein S5	complement(4560290..4560811)	Alicycliphilus denitrificans K601	10485432
YP_004390183.1	CDS	Alide2_4361	NC_015422.1	4560827	4561192	R	KEGG: dia:Dtpsy_0389 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5; 50S ribosomal protein L18	complement(4560827..4561192)	Alicycliphilus denitrificans K601	10485433
YP_004390184.1	CDS	Alide2_4362	NC_015422.1	4561204	4561737	R	KEGG: dia:Dtpsy_0388 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6	complement(4561204..4561737)	Alicycliphilus denitrificans K601	10485434
YP_004390185.1	CDS	Alide2_4363	NC_015422.1	4561762	4562157	R	PFAM: Ribosomal protein S8; KEGG: aav:Aave_0615 30S ribosomal protein S8; 30S ribosomal protein S8	complement(4561762..4562157)	Alicycliphilus denitrificans K601	10485435
YP_004390186.1	CDS	Alide2_4364	NC_015422.1	4562179	4562484	R	KEGG: dia:Dtpsy_0386 30S ribosomal protein S14; HAMAP: Ribosomal protein S14, bacterial/plastid; PFAM: Ribosomal protein S14; 30S ribosomal protein S14	complement(4562179..4562484)	Alicycliphilus denitrificans K601	10485436
YP_004390187.1	CDS	Alide2_4365	NC_015422.1	4562494	4563033	R	PFAM: Ribosomal protein L5; KEGG: dia:Dtpsy_0385 50S ribosomal protein L5; 50S ribosomal protein L5	complement(4562494..4563033)	Alicycliphilus denitrificans K601	10485437
YP_004390188.1	CDS	Alide2_4366	NC_015422.1	4563043	4563363	R	TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: dia:Dtpsy_0384 50S ribosomal protein L24; SMART: KOW; 50S ribosomal protein L24	complement(4563043..4563363)	Alicycliphilus denitrificans K601	10485438
YP_004390189.1	CDS	Alide2_4367	NC_015422.1	4563374	4563742	R	KEGG: dia:Dtpsy_0383 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e; 50S ribosomal protein L14	complement(4563374..4563742)	Alicycliphilus denitrificans K601	10485439
YP_004390190.1	CDS	Alide2_4368	NC_015422.1	4563950	4565548	R	KEGG: aav:Aave_0610 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase	complement(4563950..4565548)	Alicycliphilus denitrificans K601	10485440
YP_004390191.1	CDS	Alide2_4369	NC_015422.1	4565671	4566432	D	KEGG: ajs:Ajs_0383 DeoR family transcriptional regulator; PFAM: HTH transcriptional regulator, DeoR; HTH transcriptional regulator, DeoR N-terminal; SMART: HTH transcriptional regulator, DeoR N-terminal; DeoR family transcriptional regulator	4565671..4566432	Alicycliphilus denitrificans K601	10485441
YP_004390192.1	CDS	Alide2_4370	NC_015422.1	4566454	4567959	D	PFAM: Carbohydrate kinase, FGGY, N-terminal; Carbohydrate kinase, FGGY, C-terminal; TIGRFAM: Glycerol kinase; HAMAP: Glycerol kinase; KEGG: dia:Dtpsy_0373 glycerol kinase; glycerol kinase	4566454..4567959	Alicycliphilus denitrificans K601	10485442
YP_004390193.1	CDS	Alide2_4371	NC_015422.1	4568116	4568955	D	TIGRFAM: Pyrroline-5-carboxylate reductase; KEGG: dia:Dtpsy_0372 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase	4568116..4568955	Alicycliphilus denitrificans K601	10485443
YP_004390194.1	CDS	Alide2_4372	NC_015422.1	4569055	4570830	D	PFAM: Spore coat protein CotH; KEGG: glo:Glov_2109 spore coat protein CotH; Spore coat protein CotH	4569055..4570830	Alicycliphilus denitrificans K601	10485444
YP_004390195.1	CDS	Alide2_4373	NC_015422.1	4570837	4571709	R	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate polyprenyl transferase; KEGG: dia:Dtpsy_0371 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate octaprenyltransferase	complement(4570837..4571709)	Alicycliphilus denitrificans K601	10485445
YP_004390196.1	CDS	Alide2_4375	NC_015422.1	4574381	4574920	R	PFAM: Ferritin/Dps protein; KEGG: dia:Dtpsy_0369 ferritin Dps family protein; ferritin Dps family protein	complement(4574381..4574920)	Alicycliphilus denitrificans K601	10485447
YP_004390197.1	CDS	Alide2_4376	NC_015422.1	4575020	4575985	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0368 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4575020..4575985)	Alicycliphilus denitrificans K601	10485448
YP_004390198.1	CDS	Alide2_4377	NC_015422.1	4576031	4578148	R	TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; Helicase, C-terminal; KEGG: ajs:Ajs_0376 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; ATP-dependent DNA helicase RecG	complement(4576031..4578148)	Alicycliphilus denitrificans K601	10485449
YP_004390199.1	CDS	Alide2_4378	NC_015422.1	4578325	4579590	D	TIGRFAM: Uncharacterised protein family HDIG; PFAM: Metal-dependent phosphohydrolase, HD subdomain; KEGG: dia:Dtpsy_0366 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD domain; metal dependent phosphohydrolase	4578325..4579590	Alicycliphilus denitrificans K601	10485450
YP_004390200.1	CDS	Alide2_4379	NC_015422.1	4579679	4580782	D	KEGG: dia:Dtpsy_0365 S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; TIGRFAM: Queuosine biosynthesis protein; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase	4579679..4580782	Alicycliphilus denitrificans K601	10485451
YP_004390201.1	CDS	Alide2_4380	NC_015422.1	4580931	4581812	D	PFAM: Drug/metabolite transporter; KEGG: ajs:Ajs_0373 hypothetical protein; hypothetical protein	4580931..4581812	Alicycliphilus denitrificans K601	10485452
YP_004390202.1	CDS	Alide2_4381	NC_015422.1	4581871	4583478	R	KEGG: ctt:CtCNB1_4698 gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase; Gamma-glutamyltransferase	complement(4581871..4583478)	Alicycliphilus denitrificans K601	10485453
YP_004390203.1	CDS	Alide2_4382	NC_015422.1	4583484	4584446	R	KEGG: vei:Veis_0179 hypothetical protein; hypothetical protein	complement(4583484..4584446)	Alicycliphilus denitrificans K601	10485454
YP_004390204.1	CDS	Alide2_4383	NC_015422.1	4584573	4585478	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0178 LysR family transcriptional regulator; LysR family transcriptional regulator	4584573..4585478	Alicycliphilus denitrificans K601	10485455
YP_004390205.1	CDS	Alide2_4384	NC_015422.1	4585487	4586203	R	TIGRFAM: Uracil-DNA glycosylase; HAMAP: Uracil-DNA glycosylase; KEGG: dia:Dtpsy_0363 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase-like; Uracil-DNA glycosylase	complement(4585487..4586203)	Alicycliphilus denitrificans K601	10485456
YP_004390206.1	CDS	Alide2_4385	NC_015422.1	4586264	4587064	R	KEGG: dia:Dtpsy_0361 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; Indole-3-glycerol-phosphate synthase	complement(4586264..4587064)	Alicycliphilus denitrificans K601	10485457
YP_004390207.1	CDS	Alide2_4386	NC_015422.1	4587071	4587223	R	KEGG: ctt:CtCNB1_4464 hypothetical protein; hypothetical protein	complement(4587071..4587223)	Alicycliphilus denitrificans K601	10485458
YP_004390208.1	CDS	Alide2_4387	NC_015422.1	4587220	4588254	R	PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: dia:Dtpsy_0359 anthranilate phosphoribosyltransferase; Anthranilate phosphoribosyltransferase	complement(4587220..4588254)	Alicycliphilus denitrificans K601	10485459
YP_004390209.1	CDS	Alide2_4388	NC_015422.1	4588251	4588823	R	TIGRFAM: Anthranilate synthase, glutamine amidotransferase domain; KEGG: dia:Dtpsy_0358 anthranilate synthase component II; PFAM: Glutamine amidotransferase class-I, C-terminal; glutamine amidotransferase of anthranilate synthase	complement(4588251..4588823)	Alicycliphilus denitrificans K601	10485460
YP_004390210.1	CDS	Alide2_4389	NC_015422.1	4589621	4590535	R	PFAM: Integrase, catalytic core; KEGG: rpf:Rpic12D_2820 integrase catalytic region; integrase catalytic subunit	complement(4589621..4590535)	Alicycliphilus denitrificans K601	10485461
YP_004390211.1	CDS	Alide2_4390	NC_015422.1	4590532	4590855	R	PFAM: Transposase IS3/IS911family; KEGG: ajs:Ajs_0906 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein	complement(4590532..4590855)	Alicycliphilus denitrificans K601	10485462
YP_004390212.1	CDS	Alide2_4391	NC_015422.1	4590986	4591186	D	hypothetical protein	4590986..4591186	Alicycliphilus denitrificans K601	10485463
YP_004390213.1	CDS	Alide2_4392	NC_015422.1	4591168	4591716	R	KEGG: avn:Avin_32410 hypothetical protein; PFAM: RES; SMART: RES; RES domain-containing protein	complement(4591168..4591716)	Alicycliphilus denitrificans K601	10485464
YP_004390214.1	CDS	Alide2_4393	NC_015422.1	4591713	4592084	R	KEGG: avn:Avin_32400 hypothetical protein; hypothetical protein	complement(4591713..4592084)	Alicycliphilus denitrificans K601	10485465
YP_004390215.1	CDS	Alide2_4394	NC_015422.1	4592399	4592740	R	KEGG: dia:Dtpsy_0357 chorismate mutase; PFAM: Chorismate mutase, type II; SMART: Chorismate mutase; Chorismate mutase	complement(4592399..4592740)	Alicycliphilus denitrificans K601	10485466
YP_004390216.1	CDS	Alide2_4395	NC_015422.1	4592737	4594236	R	TIGRFAM: Anthranilate synthase component I, PabB-like; KEGG: dia:Dtpsy_0356 anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; anthranilate synthase component I	complement(4592737..4594236)	Alicycliphilus denitrificans K601	10485467
YP_004390217.1	CDS	Alide2_4396	NC_015422.1	4594579	4596339	D	KEGG: ajs:Ajs_0364 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	4594579..4596339	Alicycliphilus denitrificans K601	10485468
YP_004390218.1	CDS	Alide2_4397	NC_015422.1	4596502	4599267	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; HAMP linker domain; KEGG: slt:Slit_0879 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; HAMP linker domain; PAC motif; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase	4596502..4599267	Alicycliphilus denitrificans K601	10485469
YP_004390219.1	CDS	Alide2_4398	NC_015422.1	4599206	4599958	R	TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; KEGG: dia:Dtpsy_0352 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase	complement(4599206..4599958)	Alicycliphilus denitrificans K601	10485470
YP_004390220.1	CDS	Alide2_4399	NC_015422.1	4600147	4600521	D	KEGG: ajs:Ajs_0362 hypothetical protein; hypothetical protein	4600147..4600521	Alicycliphilus denitrificans K601	10485471
YP_004390221.1	CDS	Alide2_4400	NC_015422.1	4600538	4601218	R	TIGRFAM: Ribulose-phosphate 3-epimerase; KEGG: dia:Dtpsy_0350 ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase	complement(4600538..4601218)	Alicycliphilus denitrificans K601	10485472
YP_004390222.1	CDS	Alide2_4401	NC_015422.1	4601267	4601674	D	KEGG: dia:Dtpsy_0349 ApaG; HAMAP: Uncharacterised protein family ApaG; PFAM: ApaG domain; protein ApaG	4601267..4601674	Alicycliphilus denitrificans K601	10485473
YP_004390223.1	CDS	Alide2_4402	NC_015422.1	4601671	4603659	D	PFAM: Site-specific recombinase Gcr; KEGG: ajs:Ajs_0359 putative site-specific recombinase transmembrane protein; site-specific recombinase Gcr	4601671..4603659	Alicycliphilus denitrificans K601	10485474
YP_004390224.1	CDS	Alide2_4403	NC_015422.1	4603829	4605094	D	PFAM: Cation/H+ exchanger; KEGG: dia:Dtpsy_0347 sodium/hydrogen exchanger; sodium/hydrogen exchanger	4603829..4605094	Alicycliphilus denitrificans K601	10485475
YP_004390225.1	CDS	Alide2_4404	NC_015422.1	4605084	4606208	D	TIGRFAM: Carboxylate-amine ligase, predicted; HAMAP: Carboxylate-amine ligase, predicted; KEGG: dia:Dtpsy_0346 carboxylate-amine ligase; PFAM: Glutamate--cysteine ligase, GCS2; carboxylate-amine ligase ybdK	4605084..4606208	Alicycliphilus denitrificans K601	10485476
YP_004390226.1	CDS	Alide2_4405	NC_015422.1	4606211	4607197	D	TIGRFAM: Thiamine-monophosphate kinase; KEGG: xtr:100495996 thiamine-monophosphate kinase-like; PFAM: AIR synthase-related protein; AIR synthase-related protein, C-terminal; thiamine-monophosphate kinase	4606211..4607197	Alicycliphilus denitrificans K601	10485477
YP_004390227.1	CDS	Alide2_4406	NC_015422.1	4607182	4607634	R	KEGG: rfr:Rfer_2221 hypothetical protein; hypothetical protein	complement(4607182..4607634)	Alicycliphilus denitrificans K601	10485478
YP_004390228.1	CDS	Alide2_4407	NC_015422.1	4607738	4608214	D	KEGG: har:HEAR3117 putative type 4 fimbrial biogenesis transmembrane protein; putative type 4 fimbrial biogenesis transmembrane protein	4607738..4608214	Alicycliphilus denitrificans K601	10485479
YP_004390229.1	CDS	Alide2_4408	NC_015422.1	4608229	4608843	D	KEGG: lch:Lcho_2905 Tfp pilus assembly protein FimT; Tfp pilus assembly protein FimT	4608229..4608843	Alicycliphilus denitrificans K601	10485480
YP_004390230.1	CDS	Alide2_4409	NC_015422.1	4608864	4609319	D	TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: lch:Lcho_2906 hypothetical protein; type IV pilus modification protein PilV	4608864..4609319	Alicycliphilus denitrificans K601	10485481
YP_004390231.1	CDS	Alide2_4410	NC_015422.1	4609316	4610401	D	KEGG: lch:Lcho_2907 type IV pilus assembly protein PilW; type IV pilus assembly protein PilW	4609316..4610401	Alicycliphilus denitrificans K601	10485482
YP_004390232.1	CDS	Alide2_4411	NC_015422.1	4610386	4611066	D	KEGG: lch:Lcho_2908 type IV pilus assembly protein PilX; type IV pilus assembly protein PilX	4610386..4611066	Alicycliphilus denitrificans K601	10485483
YP_004390233.1	CDS	Alide2_4412	NC_015422.1	4611144	4614704	D	KEGG: mep:MPQ_2531 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; Pyrrolo-quinoline quinone repeat-containing protein	4611144..4614704	Alicycliphilus denitrificans K601	10485484
YP_004390234.1	CDS	Alide2_4413	NC_015422.1	4614750	4615439	R	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: axy:AXYL_05659 TetR family regulatory protein 27; TetR family transcriptional regulator	complement(4614750..4615439)	Alicycliphilus denitrificans K601	10485485
YP_004390235.1	CDS	Alide2_4414	NC_015422.1	4615598	4617340	D	PFAM: Poly-beta-hydroxybutyrate polymerase, N-terminal; Alpha/beta hydrolase fold-1; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase; poly-beta-hydroxybutyrate polymerase domain-containing protein	4615598..4617340	Alicycliphilus denitrificans K601	10485486
YP_004390236.1	CDS	Alide2_4415	NC_015422.1	4617337	4618110	D	KEGG: aav:Aave_2051 enoyl-(acyl carrier protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; enoyl-ACP reductase (NADH)	4617337..4618110	Alicycliphilus denitrificans K601	10485487
YP_004390237.1	CDS	Alide2_4416	NC_015422.1	4618115	4619569	D	KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	4618115..4619569	Alicycliphilus denitrificans K601	10485488
YP_004390238.1	CDS	Alide2_4417	NC_015422.1	4619566	4620636	D	PFAM: Secretion protein HlyD; KEGG: axy:AXYL_05661 HlyD family secretion family protein 5; secretion protein HlyD family protein	4619566..4620636	Alicycliphilus denitrificans K601	10485489
YP_004390239.1	CDS	Alide2_4418	NC_015422.1	4620633	4623371	D	PFAM: ABC transporter-like; ABC-2 type transporter; KEGG: ajs:Ajs_2361 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	4620633..4623371	Alicycliphilus denitrificans K601	10485490
YP_004390240.1	CDS	Alide2_4419	NC_015422.1	4623376	4624512	D	PFAM: ABC-2 type transporter; KEGG: bav:BAV1815 ABC transporter, permease protein; ABC transporter	4623376..4624512	Alicycliphilus denitrificans K601	10485491
YP_004390241.1	CDS	Alide2_4420	NC_015422.1	4624590	4626029	D	KEGG: rpf:Rpic12D_4426 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; MaoC-like dehydratase; phosphate acetyltransferase	4624590..4626029	Alicycliphilus denitrificans K601	10485492
YP_004390242.1	CDS	Alide2_4421	NC_015422.1	4626026	4627216	D	TIGRFAM: Acetate kinase; KEGG: har:HEAR1515 acetate kinase (acetokinase); PFAM: Acetate/butyrate kinase; acetate kinase	4626026..4627216	Alicycliphilus denitrificans K601	10485493
YP_004390243.1	CDS	Alide2_4422	NC_015422.1	4627294	4627821	D	PFAM: Phosphatidylglycerophosphatase A; KEGG: dia:Dtpsy_0344 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A	4627294..4627821	Alicycliphilus denitrificans K601	10485494
YP_004390244.1	CDS	Alide2_4423	NC_015422.1	4627828	4628346	D	KEGG: ajs:Ajs_0354 CinA domain-containing protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; CinA domain-containing protein	4627828..4628346	Alicycliphilus denitrificans K601	10485495
YP_004390245.1	CDS	Alide2_4424	NC_015422.1	4628359	4629987	R	KEGG: lch:Lcho_3216 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	complement(4628359..4629987)	Alicycliphilus denitrificans K601	10485496
YP_004390246.1	CDS	Alide2_4425	NC_015422.1	4629990	4632230	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; KEGG: slt:Slit_1460 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; HAMP linker domain; extracellular sensor-containing diguanylate cyclase/phosphodiesterase	complement(4629990..4632230)	Alicycliphilus denitrificans K601	10485497
YP_004390247.1	CDS	Alide2_4426	NC_015422.1	4632508	4633113	R	KEGG: nhl:Nhal_1312 response regulator receiver; PFAM: Signal transduction response regulator, receiver domain; ANTAR; SMART: Signal transduction response regulator, receiver domain; response regulator receiver and ANTAR domain-containing protein	complement(4632508..4633113)	Alicycliphilus denitrificans K601	10485498
YP_004390248.1	CDS	Alide2_4427	NC_015422.1	4633110	4634546	R	KEGG: lch:Lcho_2722 putative signal transduction histidine kinase; TIGRFAM: PAS; PFAM: Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain; PAS fold-4; ATPase-like, ATP-binding domain; signal transduction histidine kinase	complement(4633110..4634546)	Alicycliphilus denitrificans K601	10485499
YP_004390249.1	CDS	Alide2_4428	NC_015422.1	4634849	4635664	R	PFAM: SEC-C motif; KEGG: dia:Dtpsy_0342 sec-C motif domain protein; SEC-C motif domain-containing protein	complement(4634849..4635664)	Alicycliphilus denitrificans K601	10485500
YP_004390250.1	CDS	Alide2_4430	NC_015422.1	4636097	4636582	R	KEGG: dia:Dtpsy_0340 hypothetical protein; TIGRFAM: Protein of unknown function DUF132; SMART: Nucleotide binding protein, PINc; hypothetical protein	complement(4636097..4636582)	Alicycliphilus denitrificans K601	10485502
YP_004390251.1	CDS	Alide2_4431	NC_015422.1	4636572	4637840	R	PFAM: Putative RNA methylase; THUMP; KEGG: ajs:Ajs_0350 putative RNA methylase; SMART: THUMP; rRNA (guanine-N(2)-)-methyltransferase	complement(4636572..4637840)	Alicycliphilus denitrificans K601	10485503
YP_004390252.1	CDS	Alide2_4432	NC_015422.1	4637953	4639776	D	KEGG: aav:Aave_0421 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; Cache; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; Cache sensor-containing methyl-accepting chemotaxis sensory transducer	4637953..4639776	Alicycliphilus denitrificans K601	10485504
YP_004390253.1	CDS	Alide2_4433	NC_015422.1	4639778	4640221	R	KEGG: ajs:Ajs_0349 hypothetical protein; hypothetical protein	complement(4639778..4640221)	Alicycliphilus denitrificans K601	10485505
YP_004390254.1	CDS	Alide2_4434	NC_015422.1	4640235	4641788	R	KEGG: dia:Dtpsy_0337 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma-54 subunit RpoN	complement(4640235..4641788)	Alicycliphilus denitrificans K601	10485506
YP_004390255.1	CDS	Alide2_4435	NC_015422.1	4641838	4642638	R	PFAM: ABC transporter-like; KEGG: aav:Aave_0418 ABC transporter-related protein; SMART: ATPase, AAA+ type, core; sulfate-transporting ATPase	complement(4641838..4642638)	Alicycliphilus denitrificans K601	10485507
YP_004390256.1	CDS	Alide2_4436	NC_015422.1	4642635	4643279	R	KEGG: dia:Dtpsy_0335 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: Lipopolysccharide assembly, LptA; PFAM: Organic solvent tolerance-like, N-terminal; lipopolysaccharide transport periplasmic protein LptA	complement(4642635..4643279)	Alicycliphilus denitrificans K601	10485508
YP_004390257.1	CDS	Alide2_4437	NC_015422.1	4643399	4644055	R	PFAM: DSBA-like thioredoxin domain; KEGG: dia:Dtpsy_0334 DsbA oxidoreductase; DSBA oxidoreductase	complement(4643399..4644055)	Alicycliphilus denitrificans K601	10485509
YP_004390258.1	CDS	Alide2_4438	NC_015422.1	4644135	4644770	R	PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_0333 sporulation domain protein; Sporulation domain-containing protein	complement(4644135..4644770)	Alicycliphilus denitrificans K601	10485510
YP_004390259.1	CDS	Alide2_4439	NC_015422.1	4644783	4646486	R	TIGRFAM: Arginyl-tRNA synthetase, class Ic; KEGG: ajs:Ajs_0343 arginyl-tRNA synthetase; arginyl-tRNA synthetase	complement(4644783..4646486)	Alicycliphilus denitrificans K601	10485511
YP_004390260.1	CDS	Alide2_4440	NC_015422.1	4646611	4646937	D	PFAM: Phosphate-starvation-induced PsiF repeat; KEGG: dia:Dtpsy_0331 PsiF repeat protein; PsiF repeat-containing protein	4646611..4646937	Alicycliphilus denitrificans K601	10485512
YP_004390261.1	CDS	Alide2_4441	NC_015422.1	4646995	4647450	R	PFAM: Protein of unknown function DUF2214, membrane; KEGG: ajs:Ajs_0341 putative transmembrane protein; hypothetical protein	complement(4646995..4647450)	Alicycliphilus denitrificans K601	10485513
YP_004390262.1	CDS	Alide2_4442	NC_015422.1	4647544	4648881	R	KEGG: dac:Daci_2923 sodium:dicarboxylate symporter; HAMAP: C4-dicarboxylate transport protein; PFAM: Sodium:dicarboxylate symporter; C4-dicarboxylate transport protein	complement(4647544..4648881)	Alicycliphilus denitrificans K601	10485514
YP_004390263.1	CDS	Alide2_4443	NC_015422.1	4649081	4651741	D	KEGG: dac:Daci_2922 PAS/PAC sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; PAS fold-4; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; Signal transduction response regulator, receiver domain; PAS/PAC sensor hybrid histidine kinase	4649081..4651741	Alicycliphilus denitrificans K601	10485515
YP_004390264.1	CDS	Alide2_4444	NC_015422.1	4651807	4652445	R	KEGG: dac:Daci_2921 two component LuxR family transcriptional regulator; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; two component LuxR family transcriptional regulator	complement(4651807..4652445)	Alicycliphilus denitrificans K601	10485516
YP_004390265.1	CDS	Alide2_4445	NC_015422.1	4652459	4653391	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_0328 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4652459..4653391)	Alicycliphilus denitrificans K601	10485517
YP_004390266.1	CDS	Alide2_4446	NC_015422.1	4653626	4655824	D	TIGRFAM: Malate synthase G; KEGG: dia:Dtpsy_0327 malate synthase G; PFAM: Malate synthase; malate synthase G	4653626..4655824	Alicycliphilus denitrificans K601	10485518
YP_004390267.1	CDS	Alide2_4447	NC_015422.1	4655901	4656185	D	manually curated; KEGG: ajs:Ajs_0337 hypothetical protein; hypothetical protein	4655901..4656185	Alicycliphilus denitrificans K601	10485519
YP_004390268.1	CDS	Alide2_4448	NC_015422.1	4656161	4656349	D	KEGG: dia:Dtpsy_0325 4-oxalocrotonate tautomerase; TIGRFAM: 4-oxalocrotonate tautomerase, bacteria/archaea; PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase family enzyme	4656161..4656349	Alicycliphilus denitrificans K601	10485520
YP_004390269.1	CDS	Alide2_4449	NC_015422.1	4656372	4657160	D	PFAM: Protein of unknown function DUF169; KEGG: bbt:BBta_4610 hypothetical protein; hypothetical protein	4656372..4657160	Alicycliphilus denitrificans K601	10485521
YP_004390270.1	CDS	Alide2_4450	NC_015422.1	4657185	4657952	D	PFAM: Glutamine amidotransferase, class-II; KEGG: ajs:Ajs_0335 glutamine amidotransferase, class-II; glutamine amidotransferase class-II	4657185..4657952	Alicycliphilus denitrificans K601	10485522
YP_004390271.1	CDS	Alide2_4451	NC_015422.1	4663791	4664810	R	TIGRFAM: Glutathione synthetase, prokaryotic; KEGG: dia:Dtpsy_3256 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; glutathione synthetase	complement(4663791..4664810)	Alicycliphilus denitrificans K601	10485528
YP_004390272.1	CDS	Alide2_4452	NC_015422.1	4664770	4666011	R	KEGG: dia:Dtpsy_3257 benzoate transporter; TIGRFAM: Benzoate membrane transport protein; PFAM: Benzoate membrane transport protein; benzoate transporter	complement(4664770..4666011)	Alicycliphilus denitrificans K601	10485529
YP_004390273.1	CDS	Alide2_4453	NC_015422.1	4666103	4667974	R	KEGG: aav:Aave_4541 K+ potassium transporter; HAMAP: Potassium uptake protein, low affinity, Kup; PFAM: K+ potassium transporter; Low affinity potassium transport system protein kup	complement(4666103..4667974)	Alicycliphilus denitrificans K601	10485530
YP_004390274.1	CDS	Alide2_4454	NC_015422.1	4668070	4669413	R	KEGG: dia:Dtpsy_3259 glutamate/cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA; glutamate/cysteine ligase	complement(4668070..4669413)	Alicycliphilus denitrificans K601	10485531
YP_004390275.1	CDS	Alide2_4455	NC_015422.1	4669433	4670899	R	PFAM: Cation transporter; KEGG: dac:Daci_5998 cation transporter; cation transporter	complement(4669433..4670899)	Alicycliphilus denitrificans K601	10485532
YP_004390276.1	CDS	Alide2_4456	NC_015422.1	4670901	4672376	R	PFAM: Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: dia:Dtpsy_3261 potassium transporter peripheral membrane component; TrkA-N domain-containing protein	complement(4670901..4672376)	Alicycliphilus denitrificans K601	10485533
YP_004390277.1	CDS	Alide2_4457	NC_015422.1	4672437	4673771	R	PFAM: Aldehyde dehydrogenase domain; TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: ajs:Ajs_3913 gamma-glutamyl phosphate reductase; Gamma-glutamyl phosphate reductase	complement(4672437..4673771)	Alicycliphilus denitrificans K601	10485534
YP_004390278.1	CDS	Alide2_4458	NC_015422.1	4673789	4674124	R	hypothetical protein	complement(4673789..4674124)	Alicycliphilus denitrificans K601	10485535
YP_004390279.1	CDS	Alide2_4459	NC_015422.1	4674066	4675127	R	KEGG: ank:AnaeK_1753 RimK domain protein ATP-grasp; RimK domain-containing protein ATP-grasp	complement(4674066..4675127)	Alicycliphilus denitrificans K601	10485536
YP_004390280.1	CDS	Alide2_4460	NC_015422.1	4675124	4676431	R	PFAM: Peptidase M12A, astacin; KEGG: cph:Cpha266_0056 peptidase M12A, astacin; SMART: Peptidase, metallopeptidase; Astacin	complement(4675124..4676431)	Alicycliphilus denitrificans K601	10485537
YP_004390281.1	CDS	Alide2_4461	NC_015422.1	4676744	4677028	D	KEGG: dia:Dtpsy_3263 hypothetical protein; hypothetical protein	4676744..4677028	Alicycliphilus denitrificans K601	10485538
YP_004390282.1	CDS	Alide2_4462	NC_015422.1	4677230	4678309	R	KEGG: dia:Dtpsy_3264 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta	complement(4677230..4678309)	Alicycliphilus denitrificans K601	10485539
YP_004390283.1	CDS	Alide2_4463	NC_015422.1	4678330	4678842	R	PFAM: Lipopolysccharide assembly, LptE; KEGG: dia:Dtpsy_3265 rare lipoprotein B; Rare lipoprotein B	complement(4678330..4678842)	Alicycliphilus denitrificans K601	10485540
YP_004390284.1	CDS	Alide2_4464	NC_015422.1	4678842	4681547	R	TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; KEGG: ajs:Ajs_3917 leucyl-tRNA synthetase; leucyl-tRNA synthetase	complement(4678842..4681547)	Alicycliphilus denitrificans K601	10485541
YP_004390285.1	CDS	Alide2_4465	NC_015422.1	4681704	4682948	D	PFAM: Mechanosensitive ion channel MscS; KEGG: ajs:Ajs_3919 MscS mechanosensitive ion channel; MscS Mechanosensitive ion channel	4681704..4682948	Alicycliphilus denitrificans K601	10485542
YP_004390286.1	CDS	Alide2_4466	NC_015422.1	4683253	4684779	D	PFAM: Aldehyde dehydrogenase domain; KEGG: bmj:BMULJ_03133 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase	4683253..4684779	Alicycliphilus denitrificans K601	10485543
YP_004390287.1	CDS	Alide2_4468	NC_015422.1	4685693	4687666	R	KEGG: pna:Pnap_0735 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; GAF modulated sigma54 specific transcriptional regulator	complement(4685693..4687666)	Alicycliphilus denitrificans K601	10485545
YP_004390288.1	CDS	Alide2_4469	NC_015422.1	4688034	4688516	D	PFAM: Cytochrome c, class I; KEGG: pna:Pnap_0736 cytochrome c-type protein; cytochrome c class I	4688034..4688516	Alicycliphilus denitrificans K601	10485546
YP_004390289.1	CDS	Alide2_4470	NC_015422.1	4688931	4691507	D	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate cyclase, predicted; PAS fold; GAF; Diguanylate phosphodiesterase, EAL domain; KEGG: bxe:Bxe_C0015 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS; PAC motif; GAF; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase	4688931..4691507	Alicycliphilus denitrificans K601	10485547
YP_004390290.1	CDS	Alide2_4471	NC_015422.1	4691514	4691933	R	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ajs:Ajs_3920 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR	complement(4691514..4691933)	Alicycliphilus denitrificans K601	10485548
YP_004390291.1	CDS	Alide2_4472	NC_015422.1	4691940	4692593	R	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dia:Dtpsy_3269 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel	complement(4691940..4692593)	Alicycliphilus denitrificans K601	10485549
YP_004390292.1	CDS	Alide2_4473	NC_015422.1	4692601	4693422	R	TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; KEGG: ajs:Ajs_3922 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, C-terminal; Dihydrodipicolinate reductase, N-terminal; dihydrodipicolinate reductase	complement(4692601..4693422)	Alicycliphilus denitrificans K601	10485550
YP_004390293.1	CDS	Alide2_4474	NC_015422.1	4693477	4694019	R	PFAM: Lipoprotein SmpA/OmlA; KEGG: dia:Dtpsy_3271 SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein	complement(4693477..4694019)	Alicycliphilus denitrificans K601	10485551
YP_004390294.1	CDS	Alide2_4475	NC_015422.1	4694131	4694550	D	PFAM: Ferric-uptake regulator; KEGG: dia:Dtpsy_3272 ferric uptake regulator, Fur family; Fur family ferric uptake regulator	4694131..4694550	Alicycliphilus denitrificans K601	10485552
YP_004390295.1	CDS	Alide2_4476	NC_015422.1	4694558	4695511	R	PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, N-terminal; KEGG: dia:Dtpsy_3273 HPr kinase/phosphorylase; HPr kinase	complement(4694558..4695511)	Alicycliphilus denitrificans K601	10485553
YP_004390296.1	CDS	Alide2_4477	NC_015422.1	4695805	4696272	R	PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: ajs:Ajs_3926 PTS IIA-like nitrogen-regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN	complement(4695805..4696272)	Alicycliphilus denitrificans K601	10485554
YP_004390297.1	CDS	Alide2_4478	NC_015422.1	4696413	4696760	R	KEGG: dia:Dtpsy_3275 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; sigma 54 modulation protein/ribosomal protein S30EA	complement(4696413..4696760)	Alicycliphilus denitrificans K601	10485555
YP_004390298.1	CDS	Alide2_4479	NC_015422.1	4697073	4697993	D	TIGRFAM: SAICAR synthetase; KEGG: dia:Dtpsy_3276 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase	4697073..4697993	Alicycliphilus denitrificans K601	10485556
YP_004390299.1	CDS	Alide2_4480	NC_015422.1	4698043	4698951	R	KEGG: dia:Dtpsy_3279 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin	complement(4698043..4698951)	Alicycliphilus denitrificans K601	10485557
YP_004390300.1	CDS	Alide2_4481	NC_015422.1	4699093	4699590	D	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, core; KEGG: dia:Dtpsy_3282 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: Phosphoribosylaminoimidazole carboxylase, core; phosphoribosylaminoimidazole carboxylase, catalytic subunit	4699093..4699590	Alicycliphilus denitrificans K601	10485558
YP_004390301.1	CDS	Alide2_4482	NC_015422.1	4699587	4700756	D	TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: dia:Dtpsy_3283 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylaminoimidazole carboxylase, ATPase subunit	4699587..4700756	Alicycliphilus denitrificans K601	10485559
YP_004390302.1	CDS	Alide2_4483	NC_015422.1	4700762	4701760	D	KEGG: ajs:Ajs_3936 translation factor SUA5; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; SUA5; Sua5/YciO/YrdC/YwlC family protein	4700762..4701760	Alicycliphilus denitrificans K601	10485560
YP_004390303.1	CDS	Alide2_4484	NC_015422.1	4701824	4702780	D	PFAM: Lipase, GDSL; KEGG: ajs:Ajs_3937 lipase; G-D-S-L family lipolytic protein	4701824..4702780	Alicycliphilus denitrificans K601	10485561
YP_004390304.1	CDS	Alide2_4485	NC_015422.1	4702849	4703544	R	PFAM: Outer membrane protein, OmpW; KEGG: pna:Pnap_1827 OmpW family protein; OmpW family protein	complement(4702849..4703544)	Alicycliphilus denitrificans K601	10485562
YP_004390305.1	CDS	Alide2_4486	NC_015422.1	4703573	4705132	R	KEGG: pna:Pnap_1828 hypothetical protein; hypothetical protein	complement(4703573..4705132)	Alicycliphilus denitrificans K601	10485563
YP_004390306.1	CDS	Alide2_4487	NC_015422.1	4705235	4706707	R	TIGRFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: dia:Dtpsy_3288 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	complement(4705235..4706707)	Alicycliphilus denitrificans K601	10485564
YP_004390307.1	CDS	Alide2_4488	NC_015422.1	4706783	4707511	D	KEGG: ajs:Ajs_3940 peptidase M22, glycoprotease; TIGRFAM: Conserved hypothetical protein CHP03725, YeaZ; PFAM: Peptidase M22, glycoprotease; hypothetical protein	4706783..4707511	Alicycliphilus denitrificans K601	10485565
YP_004390308.1	CDS	Alide2_4489	NC_015422.1	4707508	4707984	D	KEGG: dia:Dtpsy_3290 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; ribosomal-protein-alanine acetyltransferase	4707508..4707984	Alicycliphilus denitrificans K601	10485566
YP_004390309.1	CDS	Alide2_4490	NC_015422.1	4707981	4708718	D	KEGG: dia:Dtpsy_3291 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein	4707981..4708718	Alicycliphilus denitrificans K601	10485567
YP_004390310.1	CDS	Alide2_4491	NC_015422.1	4708889	4709875	D	KEGG: dac:Daci_0973 magnesium and cobalt transport protein CorA; TIGRFAM: Magnesium/cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; magnesium and cobalt transport protein CorA	4708889..4709875	Alicycliphilus denitrificans K601	10485568
YP_004390311.1	CDS	Alide2_4492	NC_015422.1	4710170	4710379	D	hypothetical protein	4710170..4710379	Alicycliphilus denitrificans K601	10485569
YP_004390312.1	CDS	Alide2_4493	NC_015422.1	4710679	4710861	D	hypothetical protein	4710679..4710861	Alicycliphilus denitrificans K601	10485570
YP_004390313.1	CDS	Alide2_4494	NC_015422.1	4710930	4711697	R	TIGRFAM: MTA/SAH nucleosidase; KEGG: dia:Dtpsy_3298 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; PFAM: Nucleoside phosphorylase domain; MTA/SAH nucleosidase	complement(4710930..4711697)	Alicycliphilus denitrificans K601	10485571
YP_004390314.1	CDS	Alide2_4495	NC_015422.1	4711757	4713433	R	KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; Long-chain-fatty-acid--CoA ligase	complement(4711757..4713433)	Alicycliphilus denitrificans K601	10485572
YP_004390315.1	CDS	Alide2_4496	NC_015422.1	4713524	4714936	R	KEGG: ctt:CtCNB1_0258 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase	complement(4713524..4714936)	Alicycliphilus denitrificans K601	10485573
YP_004390316.1	CDS	Alide2_4497	NC_015422.1	4714973	4716583	R	KEGG: bpt:Bpet4170 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: Alanine dehydrogenase/PNT, C-terminal; Alanine dehydrogenase/PNT, N-terminal; NAD(P) transhydrogenase subunit alpha	complement(4714973..4716583)	Alicycliphilus denitrificans K601	10485574
YP_004390317.1	CDS	Alide2_4498	NC_015422.1	4716638	4717357	R	KEGG: dia:Dtpsy_3302 hypothetical protein; hypothetical protein	complement(4716638..4717357)	Alicycliphilus denitrificans K601	10485575
YP_004390318.1	CDS	Alide2_4499	NC_015422.1	4717481	4718545	R	TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; KEGG: dia:Dtpsy_3304 fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: Ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase	complement(4717481..4718545)	Alicycliphilus denitrificans K601	10485576
YP_004390319.1	CDS	Alide2_4500	NC_015422.1	4718683	4720125	R	TIGRFAM: Pyruvate kinase; KEGG: dia:Dtpsy_3305 pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, C-terminal-like; pyruvate kinase	complement(4718683..4720125)	Alicycliphilus denitrificans K601	10485577
YP_004390320.1	CDS	Alide2_4501	NC_015422.1	4720201	4721583	R	KEGG: dia:Dtpsy_3306 peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; Xaa-Pro aminopeptidase	complement(4720201..4721583)	Alicycliphilus denitrificans K601	10485578
YP_004390321.1	CDS	Alide2_4502	NC_015422.1	4721805	4722584	R	PFAM: Crotonase, core; KEGG: dac:Daci_0802 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase	complement(4721805..4722584)	Alicycliphilus denitrificans K601	10485579
YP_004390322.1	CDS	Alide2_4503	NC_015422.1	4722584	4723555	R	KEGG: dac:Daci_0801 hypothetical protein; hypothetical protein	complement(4722584..4723555)	Alicycliphilus denitrificans K601	10485580
YP_004390323.1	CDS	Alide2_4504	NC_015422.1	4723556	4724734	R	KEGG: xtr:100495402 caiB/baiF CoA-transferase family protein DDB_G0269880-like; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(4723556..4724734)	Alicycliphilus denitrificans K601	10485581
YP_004390324.1	CDS	Alide2_4505	NC_015422.1	4724745	4725908	R	PFAM: Thiolase, C-terminal; KEGG: rme:Rmet_5111 thiolase; thiolase domain-containing protein	complement(4724745..4725908)	Alicycliphilus denitrificans K601	10485582
YP_004390325.1	CDS	Alide2_4506	NC_015422.1	4725905	4726306	R	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal; KEGG: axy:AXYL_04666 hypothetical protein; hypothetical protein	complement(4725905..4726306)	Alicycliphilus denitrificans K601	10485583
YP_004390326.1	CDS	Alide2_4507	NC_015422.1	4726311	4727318	R	KEGG: axy:AXYL_04659 extra-cytoplasmic solute receptor family protein 120; extra-cytoplasmic solute receptor family protein	complement(4726311..4727318)	Alicycliphilus denitrificans K601	10485584
YP_004390327.1	CDS	Alide2_4508	NC_015422.1	4727478	4728386	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: xtr:100494792 uncharacterized HTH-type transcriptional regulator ywbI-like; LysR family transcriptional regulator	complement(4727478..4728386)	Alicycliphilus denitrificans K601	10485585
YP_004390328.1	CDS	Alide2_4509	NC_015422.1	4728392	4729168	R	PFAM: Nucleotidyl transferase; KEGG: ajs:Ajs_3958 nucleotidyl transferase; nucleotidyl transferase	complement(4728392..4729168)	Alicycliphilus denitrificans K601	10485586
YP_004390329.1	CDS	Alide2_4510	NC_015422.1	4729243	4731279	D	SMART: Transketolase-like, pyrimidine-binding domain; TIGRFAM: Transketolase, bacterial-like; KEGG: dia:Dtpsy_3309 transketolase; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase	4729243..4731279	Alicycliphilus denitrificans K601	10485587
YP_004390330.1	CDS	Alide2_4511	NC_015422.1	4731310	4732311	D	SMART: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: ajs:Ajs_3960 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; type I glyceraldehyde-3-phosphate dehydrogenase	4731310..4732311	Alicycliphilus denitrificans K601	10485588
YP_004390331.1	CDS	Alide2_4512	NC_015422.1	4732473	4732817	R	PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; KEGG: dia:Dtpsy_3312 ribosomal subunit interface protein, putative; sigma 54 modulation protein/ribosomal protein S30EA	complement(4732473..4732817)	Alicycliphilus denitrificans K601	10485589
YP_004390332.1	CDS	Alide2_4513	NC_015422.1	4732991	4733872	D	PFAM: Peptidase C26; KEGG: dia:Dtpsy_3313 peptidase C26; peptidase C26	4732991..4733872	Alicycliphilus denitrificans K601	10485590
YP_004390333.1	CDS	Alide2_4514	NC_015422.1	4733873	4734757	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pol:Bpro_2148 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4733873..4734757)	Alicycliphilus denitrificans K601	10485591
YP_004390334.1	CDS	Alide2_4515	NC_015422.1	4734878	4735768	D	PFAM: Amidohydrolase 2; KEGG: pol:Bpro_2147 amidohydrolase 2; amidohydrolase 2	4734878..4735768	Alicycliphilus denitrificans K601	10485592
YP_004390335.1	CDS	Alide2_4516	NC_015422.1	4735811	4736641	D	KEGG: pol:Bpro_2146 short-chain dehydrogenase/reductase SDR; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	4735811..4736641	Alicycliphilus denitrificans K601	10485593
YP_004390336.1	CDS	Alide2_4517	NC_015422.1	4736698	4737669	D	KEGG: pol:Bpro_2145 hypothetical protein; hypothetical protein	4736698..4737669	Alicycliphilus denitrificans K601	10485594
YP_004390337.1	CDS	Alide2_4518	NC_015422.1	4737693	4738214	D	PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_2144 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase	4737693..4738214	Alicycliphilus denitrificans K601	10485595
YP_004390338.1	CDS	Alide2_4519	NC_015422.1	4738211	4738924	D	KEGG: pol:Bpro_2143 hypothetical protein; hypothetical protein	4738211..4738924	Alicycliphilus denitrificans K601	10485596
YP_004390339.1	CDS	Alide2_4520	NC_015422.1	4738949	4740163	R	KEGG: dac:Daci_2267 PepSY-associated TM helix domain-containing protein; PepSY-associated TM helix domain-containing protein	complement(4738949..4740163)	Alicycliphilus denitrificans K601	10485597
YP_004390340.1	CDS	Alide2_4521	NC_015422.1	4740163	4742370	R	KEGG: ctt:CtCNB1_3496 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; TonB-dependent siderophore receptor	complement(4740163..4742370)	Alicycliphilus denitrificans K601	10485598
YP_004390341.1	CDS	Alide2_4522	NC_015422.1	4742511	4742984	R	KEGG: dia:Dtpsy_3314 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase	complement(4742511..4742984)	Alicycliphilus denitrificans K601	10485599
YP_004390342.1	CDS	Alide2_4523	NC_015422.1	4743039	4744010	R	KEGG: ctt:CtCNB1_4653 TctC; hypothetical protein	complement(4743039..4744010)	Alicycliphilus denitrificans K601	10485600
YP_004390343.1	CDS	Alide2_4524	NC_015422.1	4744042	4744395	R	KEGG: ctt:CtCNB1_4654 hypothetical protein; hypothetical protein	complement(4744042..4744395)	Alicycliphilus denitrificans K601	10485601
YP_004390344.1	CDS	Alide2_4525	NC_015422.1	4744414	4745775	R	PFAM: Protein of unknown function DUF1446; KEGG: ctt:CtCNB1_4655 NAD-dependent aldehyde dehydrogenase; hypothetical protein	complement(4744414..4745775)	Alicycliphilus denitrificans K601	10485602
YP_004390345.1	CDS	Alide2_4526	NC_015422.1	4745884	4746774	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: ctt:CtCNB1_4656 transcriptional regulator, LysR family; LysR family transcriptional regulator	4745884..4746774	Alicycliphilus denitrificans K601	10485603
YP_004390346.1	CDS	Alide2_4527	NC_015422.1	4746874	4747350	R	KEGG: aav:Aave_4607 transcription activator, effector binding; PFAM: Bacterial transcription activator, effector binding; SMART: Bacterial transcription activator, effector binding; transcriptional activator ligand binding domain-containing protein	complement(4746874..4747350)	Alicycliphilus denitrificans K601	10485604
YP_004390347.1	CDS	Alide2_4528	NC_015422.1	4747652	4748707	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: dia:Dtpsy_3318 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(4747652..4748707)	Alicycliphilus denitrificans K601	10485605
YP_004390348.1	CDS	Alide2_4529	NC_015422.1	4748804	4749427	R	KEGG: dia:Dtpsy_3319 hypothetical protein; hypothetical protein	complement(4748804..4749427)	Alicycliphilus denitrificans K601	10485606
YP_004390349.1	CDS	Alide2_4530	NC_015422.1	4749455	4750201	R	PFAM: DTW; KEGG: ajs:Ajs_3970 DTW domain-containing protein; DTW domain-containing protein	complement(4749455..4750201)	Alicycliphilus denitrificans K601	10485607
YP_004390350.1	CDS	Alide2_4531	NC_015422.1	4750379	4751221	D	KEGG: ajs:Ajs_3971 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	4750379..4751221	Alicycliphilus denitrificans K601	10485608
YP_004390351.1	CDS	Alide2_4532	NC_015422.1	4751218	4752369	D	KEGG: ajs:Ajs_3972 thiolase; thiolase	4751218..4752369	Alicycliphilus denitrificans K601	10485609
YP_004390352.1	CDS	Alide2_4533	NC_015422.1	4752372	4752731	D	PFAM: Domain of unknown function DUF35, OB-fold, C-terminal; KEGG: ajs:Ajs_3973 hypothetical protein; hypothetical protein	4752372..4752731	Alicycliphilus denitrificans K601	10485610
YP_004390353.1	CDS	Alide2_4534	NC_015422.1	4752754	4753731	D	KEGG: dia:Dtpsy_3324 hypothetical protein; hypothetical protein	4752754..4753731	Alicycliphilus denitrificans K601	10485611
YP_004390354.1	CDS	Alide2_4535	NC_015422.1	4753740	4755827	D	KEGG: dia:Dtpsy_3325 CoA-binding domain protein; PFAM: CoA-binding; ATP-grasp fold, succinyl-CoA synthetase-type; SMART: CoA-binding; CoA-binding domain-containing protein	4753740..4755827	Alicycliphilus denitrificans K601	10485612
YP_004390355.1	CDS	Alide2_4536	NC_015422.1	4755876	4756574	R	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: ajs:Ajs_3976 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein	complement(4755876..4756574)	Alicycliphilus denitrificans K601	10485613
YP_004390356.1	CDS	Alide2_4537	NC_015422.1	4756577	4757338	R	KEGG: ajs:Ajs_3977 3-ketoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase	complement(4756577..4757338)	Alicycliphilus denitrificans K601	10485614
YP_004390357.1	CDS	Alide2_4538	NC_015422.1	4757366	4757767	R	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase	complement(4757366..4757767)	Alicycliphilus denitrificans K601	10485615
YP_004390358.1	CDS	Alide2_4539	NC_015422.1	4757812	4760733	R	SMART: DNA topoisomerase, type IA, DNA-binding; SWIB domain; DNA topoisomerase, type IA, domain 2; Toprim domain; TIGRFAM: DNA topoisomerase III, bacterial-type; KEGG: ajs:Ajs_3990 DNA topoisomerase III; PFAM: DNA topoisomerase, type IA, central; SWIB/MDM2 domain; Toprim domain; DNA topoisomerase III	complement(4757812..4760733)	Alicycliphilus denitrificans K601	10485616
YP_004390359.1	CDS	Alide2_4540	NC_015422.1	4760834	4761385	D	KEGG: dia:Dtpsy_3340 nuclear protein SET; PFAM: SET domain; SMART: SET domain; Post-SET domain; nuclear protein SET	4760834..4761385	Alicycliphilus denitrificans K601	10485617
YP_004390360.1	CDS	Alide2_4541	NC_015422.1	4761382	4762212	D	KEGG: dia:Dtpsy_3341 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; Biotin protein ligase, C-terminal; biotin/acetyl-CoA-carboxylase ligase	4761382..4762212	Alicycliphilus denitrificans K601	10485618
YP_004390361.1	CDS	Alide2_4542	NC_015422.1	4762369	4763040	D	PFAM: Sporulation-related domain; KEGG: dia:Dtpsy_3342 sporulation domain protein; Sporulation domain-containing protein	4762369..4763040	Alicycliphilus denitrificans K601	10485619
YP_004390362.1	CDS	Alide2_4543	NC_015422.1	4763048	4764085	R	KEGG: pna:Pnap_2134 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase, C-terminal; Alcohol dehydrogenase GroES-like; NADPH:quinone reductase	complement(4763048..4764085)	Alicycliphilus denitrificans K601	10485620
YP_004390363.1	CDS	Alide2_4544	NC_015422.1	4764082	4764537	R	PFAM: MaoC-like dehydratase; KEGG: axy:AXYL_04788 MaoC-like domain-containing protein 10; MaoC domain-containing protein dehydratase	complement(4764082..4764537)	Alicycliphilus denitrificans K601	10485621
YP_004390364.1	CDS	Alide2_4545	NC_015422.1	4764524	4764994	R	KEGG: axy:AXYL_04789 acyl dehydratase 3; acyl dehydratase 3	complement(4764524..4764994)	Alicycliphilus denitrificans K601	10485622
YP_004390365.1	CDS	Alide2_4546	NC_015422.1	4765005	4766201	R	PFAM: Extracellular ligand-binding receptor; KEGG: xtr:100489190 leu/Ile/Val-binding protein homolog 6-like; extracellular ligand-binding receptor	complement(4765005..4766201)	Alicycliphilus denitrificans K601	10485623
YP_004390366.1	CDS	Alide2_4547	NC_015422.1	4766261	4768243	R	KEGG: bur:Bcep18194_C7155 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase	complement(4766261..4768243)	Alicycliphilus denitrificans K601	10485624
YP_004390367.1	CDS	Alide2_4548	NC_015422.1	4768375	4768881	D	KEGG: vei:Veis_4103 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator	4768375..4768881	Alicycliphilus denitrificans K601	10485625
YP_004390368.1	CDS	Alide2_4549	NC_015422.1	4768963	4769334	D	KEGG: afw:Anae109_4130 hypothetical protein; hypothetical protein	4768963..4769334	Alicycliphilus denitrificans K601	10485626
YP_004390369.1	CDS	Alide2_4550	NC_015422.1	4769602	4770300	D	KEGG: azo:azo2874 hypothetical protein; PFAM: RES; SMART: RES; RES domain-containing protein	4769602..4770300	Alicycliphilus denitrificans K601	10485627
YP_004390370.1	CDS	Alide2_4551	NC_015422.1	4770311	4771384	R	PFAM: Opine dehydrogenase; Ketopantoate reductase ApbA/PanE, N-terminal; KEGG: vap:Vapar_0420 NAD/NADP octopine/nopaline dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase	complement(4770311..4771384)	Alicycliphilus denitrificans K601	10485628
YP_004390371.1	CDS	Alide2_4552	NC_015422.1	4771381	4772409	R	KEGG: vap:Vapar_0421 hypothetical protein; hypothetical protein	complement(4771381..4772409)	Alicycliphilus denitrificans K601	10485629
YP_004390372.1	CDS	Alide2_4553	NC_015422.1	4772441	4773886	R	KEGG: dia:Dtpsy_3348 histidine kinase; PFAM: Two-component sensor kinase N-terminal; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(4772441..4773886)	Alicycliphilus denitrificans K601	10485630
YP_004390373.1	CDS	Alide2_4554	NC_015422.1	4773952	4774626	R	KEGG: ajs:Ajs_3999 two component transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(4773952..4774626)	Alicycliphilus denitrificans K601	10485631
YP_004390374.1	CDS	Alide2_4555	NC_015422.1	4774754	4775884	R	PFAM: Aminotransferase, class V/Cysteine desulfurase; TIGRFAM: 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate aminotransferase; HAMAP: 2-aminoethylphosphonate--pyruvate transaminase; KEGG: bcj:BCAL0446 2-aminoethylphosphonate--pyruvate transaminase; 2-aminoethylphosphonate--pyruvate transaminase	complement(4774754..4775884)	Alicycliphilus denitrificans K601	10485632
YP_004390375.1	CDS	Alide2_4556	NC_015422.1	4775919	4777640	R	KEGG: reu:Reut_B5872 binding-protein dependent transport system inner membrane protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, permease protein, putative; PFAM: Binding-protein-dependent transport systems inner membrane component; 2-aminoethylphosphonate ABC transporter permease	complement(4775919..4777640)	Alicycliphilus denitrificans K601	10485633
YP_004390376.1	CDS	Alide2_4557	NC_015422.1	4777637	4778770	R	SMART: ATPase, AAA+ type, core; TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2; KEGG: reu:Reut_B5873 ABC transporter related; PFAM: ABC transporter-like; 2-aminoethylphosphonate ABC transporter ATP-binding protein	complement(4777637..4778770)	Alicycliphilus denitrificans K601	10485634
YP_004390377.1	CDS	Alide2_4558	NC_015422.1	4778848	4779885	R	KEGG: reu:Reut_B5874 extracellular solute-binding protein; TIGRFAM: 2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component; PFAM: Bacterial extracellular solute-binding, family 1; 2-aminoethylphosphonate ABC transporter substrate-binding protein	complement(4778848..4779885)	Alicycliphilus denitrificans K601	10485635
YP_004390378.1	CDS	Alide2_4559	NC_015422.1	4780028	4780756	D	TIGRFAM: Transcription regulator, 2-aminoethylphosphonate utilisation-associated; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; KEGG: reu:Reut_B5875 GntR family transcriptional regulator; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	4780028..4780756	Alicycliphilus denitrificans K601	10485636
YP_004390379.1	CDS	Alide2_4560	NC_015422.1	4780758	4781993	D	KEGG: reu:Reut_B5876 type I phosphodiesterase/nucleotide pyrophosphatase; TIGRFAM: Phosphonoacetate hydrolase; PFAM: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; phosphonoacetate hydrolase	4780758..4781993	Alicycliphilus denitrificans K601	10485637
YP_004390380.1	CDS	Alide2_4561	NC_015422.1	4782028	4783476	D	TIGRFAM: Putative phosphonoacetaldehyde dehydrogenase; KEGG: cti:RALTA_B0682 NAD+ dependent acetaldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; phosphonoacetaldehyde dehydrogenase	4782028..4783476	Alicycliphilus denitrificans K601	10485638
YP_004390381.1	CDS	Alide2_4562	NC_015422.1	4783482	4784021	D	TIGRFAM: Phosphonate degradation operon associated HDIG domain protein; KEGG: vei:Veis_1186 HD phosphohydrolase-like protein; phosphonate degradation operons associated HDIG domain-containing protein	4783482..4784021	Alicycliphilus denitrificans K601	10485639
YP_004390382.1	CDS	Alide2_4563	NC_015422.1	4784121	4785509	D	KEGG: bcm:Bcenmc03_3163 aminophosphonate oxidoreductase; TIGRFAM: Putative aminophosphonate oxidoreductase; PFAM: FAD dependent oxidoreductase; aminophosphonate oxidoreductase	4784121..4785509	Alicycliphilus denitrificans K601	10485640
YP_004390383.1	CDS	Alide2_4564	NC_015422.1	4785648	4786724	R	TIGRFAM: Alanine racemase; KEGG: tmz:Tmz1t_3995 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; alanine racemase	complement(4785648..4786724)	Alicycliphilus denitrificans K601	10485641
YP_004390384.1	CDS	Alide2_4565	NC_015422.1	4786721	4788031	R	HAMAP: D-amino acid dehydrogenase small subunit, DadA; KEGG: dac:Daci_3117 D-amino acid dehydrogenase small subunit; PFAM: FAD dependent oxidoreductase; D-amino acid dehydrogenase small subunit	complement(4786721..4788031)	Alicycliphilus denitrificans K601	10485642
YP_004390385.1	CDS	Alide2_4566	NC_015422.1	4788158	4788670	D	KEGG: vap:Vapar_3966 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	4788158..4788670	Alicycliphilus denitrificans K601	10485643
YP_004390386.1	CDS	Alide2_4567	NC_015422.1	4788655	4789134	R	PFAM: HTH transcriptional regulator, MarR; KEGG: ajs:Ajs_4000 MarR family transcriptional regulator; regulatory protein MarR	complement(4788655..4789134)	Alicycliphilus denitrificans K601	10485644
YP_004390387.1	CDS	Alide2_4568	NC_015422.1	4789281	4790390	D	TIGRFAM: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; KEGG: dia:Dtpsy_3351 RecA protein; SMART: ATPase, AAA+ type, core; recA protein	4789281..4790390	Alicycliphilus denitrificans K601	10485645
YP_004390388.1	CDS	Alide2_4569	NC_015422.1	4790471	4790929	D	PFAM: Regulatory protein RecX; KEGG: dia:Dtpsy_3352 regulatory protein RecX; regulatory protein RecX	4790471..4790929	Alicycliphilus denitrificans K601	10485646
YP_004390389.1	CDS	Alide2_4570	NC_015422.1	4790985	4793279	R	PFAM: Protein of unknown function DUF1631; KEGG: dia:Dtpsy_3353 hypothetical protein; hypothetical protein	complement(4790985..4793279)	Alicycliphilus denitrificans K601	10485647
YP_004390390.1	CDS	Alide2_4571	NC_015422.1	4793336	4794289	R	KEGG: dia:Dtpsy_3354 preprotein translocase subunit SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecF	complement(4793336..4794289)	Alicycliphilus denitrificans K601	10485648
YP_004390391.1	CDS	Alide2_4572	NC_015422.1	4794301	4796196	R	KEGG: dia:Dtpsy_3355 preprotein translocase subunit SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein, bacteria; PFAM: Preprotein translocase, SecD/SecF/SecDF; SecD/SecF/SecDF export membrane protein, GG motif, N-terminal; protein-export membrane protein SecD	complement(4794301..4796196)	Alicycliphilus denitrificans K601	10485649
YP_004390392.1	CDS	Alide2_4573	NC_015422.1	4796279	4796611	R	KEGG: dia:Dtpsy_3356 preprotein translocase, YajC subunit; TIGRFAM: Preprotein translocase YajC; PFAM: Preprotein translocase YajC; preprotein translocase subunit YajC	complement(4796279..4796611)	Alicycliphilus denitrificans K601	10485650
YP_004390393.1	CDS	Alide2_4574	NC_015422.1	4796815	4800432	R	PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; KEGG: ajs:Ajs_4008 indolepyruvate ferredoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase	complement(4796815..4800432)	Alicycliphilus denitrificans K601	10485651
YP_004390394.1	CDS	Alide2_4575	NC_015422.1	4800612	4801085	D	KEGG: dia:Dtpsy_3359 transcriptional regulator, AsnC family; PFAM: Transcription regulator AsnC-type, C-terminal; SMART: Transcription regulator AsnC-type; AsnC family transcriptional regulator	4800612..4801085	Alicycliphilus denitrificans K601	10485652
YP_004390395.1	CDS	Alide2_4576	NC_015422.1	4801228	4802937	D	PFAM: Major facilitator superfamily, enterobactin exporter EntS; KEGG: dia:Dtpsy_3362 protein of unknown function DUF894 DitE; hypothetical protein	4801228..4802937	Alicycliphilus denitrificans K601	10485653
YP_004390396.1	CDS	Alide2_4577	NC_015422.1	4803046	4804245	R	manually curated; PFAM: Lytic transglycosylase MltA; 3D; KEGG: ajs:Ajs_4013 MltA domain-containing protein; SMART: Lytic transglycosylase MltA; MltA domain-containing protein	complement(4803046..4804245)	Alicycliphilus denitrificans K601	10485654
YP_004390397.1	CDS	Alide2_4578	NC_015422.1	4804428	4805072	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: dia:Dtpsy_3364 OmpA/MotB domain protein; OmpA/MotB domain-containing protein	4804428..4805072	Alicycliphilus denitrificans K601	10485655
YP_004390398.1	CDS	Alide2_4579	NC_015422.1	4805130	4805765	R	KEGG: ajs:Ajs_4015 response regulator receiver protein; PFAM: Transcription regulator LuxR, C-terminal; Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	complement(4805130..4805765)	Alicycliphilus denitrificans K601	10485656
YP_004390399.1	CDS	Alide2_4580	NC_015422.1	4805765	4807858	R	TIGRFAM: PAS; PFAM: ATPase-like, ATP-binding domain; PAS fold; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; KEGG: dia:Dtpsy_3366 PAS/PAC sensor signal transduction histidine kinase; SMART: ATPase-like, ATP-binding domain; PAS; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; multi-sensor signal transduction histidine kinase	complement(4805765..4807858)	Alicycliphilus denitrificans K601	10485657
YP_004390400.1	CDS	Alide2_4581	NC_015422.1	4807882	4808697	R	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dia:Dtpsy_3367 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase	complement(4807882..4808697)	Alicycliphilus denitrificans K601	10485658
YP_004390401.1	CDS	Alide2_4582	NC_015422.1	4808694	4812782	R	TIGRFAM: Conserved hypothetical protein CHP02099; KEGG: dia:Dtpsy_3368 hypothetical protein; hypothetical protein	complement(4808694..4812782)	Alicycliphilus denitrificans K601	10485659
YP_004390402.1	CDS	Alide2_4583	NC_015422.1	4812876	4815623	D	KEGG: dia:Dtpsy_3369 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase, repeated domain; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase	4812876..4815623	Alicycliphilus denitrificans K601	10485660
YP_004390403.1	CDS	Alide2_4584	NC_015422.1	4815852	4816994	D	KEGG: dia:Dtpsy_3372 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	4815852..4816994	Alicycliphilus denitrificans K601	10485661
YP_004390404.1	CDS	Alide2_4585	NC_015422.1	4817007	4820066	D	PFAM: Acriflavin resistance protein; KEGG: ajs:Ajs_4023 acriflavin resistance protein; acriflavin resistance protein	4817007..4820066	Alicycliphilus denitrificans K601	10485662
YP_004390405.1	CDS	Alide2_4586	NC_015422.1	4820460	4821074	R	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: dia:Dtpsy_3375 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein	complement(4820460..4821074)	Alicycliphilus denitrificans K601	10485663
YP_004390406.1	CDS	Alide2_4587	NC_015422.1	4821187	4822566	D	TIGRFAM: Adenylosuccinate lyase; KEGG: dia:Dtpsy_3376 adenylosuccinate lyase; PFAM: Lyase 1, N-terminal; Adenylosuccinate lyase C-terminal/plant; adenylosuccinate lyase	4821187..4822566	Alicycliphilus denitrificans K601	10485664
YP_004390407.1	CDS	Alide2_4588	NC_015422.1	4822636	4823196	D	PFAM: YaeQ; KEGG: dia:Dtpsy_3377 YaeQ family protein; YaeQ family protein	4822636..4823196	Alicycliphilus denitrificans K601	10485665
YP_004390408.1	CDS	Alide2_4589	NC_015422.1	4823466	4823771	R	KEGG: dia:Dtpsy_3378 hypothetical protein; hypothetical protein	complement(4823466..4823771)	Alicycliphilus denitrificans K601	10485666
YP_004390409.1	CDS	Alide2_4590	NC_015422.1	4823812	4824216	R	PFAM: Protein of unknown function DUF1289; KEGG: dia:Dtpsy_3379 protein of unknown function DUF1289; hypothetical protein	complement(4823812..4824216)	Alicycliphilus denitrificans K601	10485667
YP_004390410.1	CDS	Alide2_4591	NC_015422.1	4824624	4825361	D	KEGG: ajs:Ajs_4030 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein	4824624..4825361	Alicycliphilus denitrificans K601	10485668
YP_004390411.1	CDS	Alide2_4592	NC_015422.1	4825396	4825866	D	KEGG: ajs:Ajs_4031 hypothetical protein; hypothetical protein	4825396..4825866	Alicycliphilus denitrificans K601	10485669
YP_004390412.1	CDS	Alide2_4593	NC_015422.1	4825868	4826788	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: rme:Rmet_4070 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4825868..4826788)	Alicycliphilus denitrificans K601	10485670
YP_004390413.1	CDS	Alide2_4595	NC_015422.1	4828290	4828646	D	PFAM: Membrane protein of unknown function; KEGG: dia:Dtpsy_3382 membrane protein of unknown function; hypothetical protein	4828290..4828646	Alicycliphilus denitrificans K601	10485672
YP_004390414.1	CDS	Alide2_4596	NC_015422.1	4828614	4830140	R	PFAM: Peptidase M48; KEGG: dia:Dtpsy_3383 peptidase M48 Ste24p; peptidase M48 Ste24p	complement(4828614..4830140)	Alicycliphilus denitrificans K601	10485673
YP_004390415.1	CDS	Alide2_4597	NC_015422.1	4830290	4830775	D	KEGG: ajs:Ajs_4034 GTP cyclohydrolase subunit MoaC; TIGRFAM: Molybdenum cofactor biosynthesis C; PFAM: Molybdopterin cofactor biosynthesis C (MoaC) domain; molybdenum cofactor biosynthesis protein C	4830290..4830775	Alicycliphilus denitrificans K601	10485674
YP_004390416.1	CDS	Alide2_4598	NC_015422.1	4831077	4832501	R	KEGG: nla:NLA_7720 hypothetical protein; hypothetical protein	complement(4831077..4832501)	Alicycliphilus denitrificans K601	10485675
YP_004390417.1	CDS	Alide2_4599	NC_015422.1	4832520	4833290	R	KEGG: dia:Dtpsy_3386 FimB; hypothetical protein	complement(4832520..4833290)	Alicycliphilus denitrificans K601	10485676
YP_004390418.1	CDS	Alide2_4600	NC_015422.1	4833400	4833978	R	manually curated; KEGG: pau:PA14_58730 type IV pilin structural subunit; type IV pilin structural subunit	complement(4833400..4833978)	Alicycliphilus denitrificans K601	10485677
YP_004390419.1	CDS	Alide2_4601	NC_015422.1	4834263	4835051	R	KEGG: pol:Bpro_4676 cyclic-AMP phosphodiesterase; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; cyclic-AMP phosphodiesterase	complement(4834263..4835051)	Alicycliphilus denitrificans K601	10485678
YP_004390420.1	CDS	Alide2_4602	NC_015422.1	4835119	4835745	R	KEGG: ajs:Ajs_4043 FHA domain-containing protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; FHA domain-containing protein	complement(4835119..4835745)	Alicycliphilus denitrificans K601	10485679
YP_004390421.1	CDS	Alide2_4603	NC_015422.1	4835807	4836613	R	KEGG: ajs:Ajs_4044 protein phosphatase 2C domain-containing protein; PFAM: Protein phosphatase 2C, N-terminal; SMART: Protein phosphatase 2C-like; protein serine/threonine phosphatase	complement(4835807..4836613)	Alicycliphilus denitrificans K601	10485680
YP_004390422.1	CDS	Alide2_4604	NC_015422.1	4836840	4837523	R	KEGG: ajs:Ajs_4045 integral membrane protein TerC; TIGRFAM: Integral membrane protein YjbE; PFAM: Integral membrane protein TerC; YjbE family integral membrane protein	complement(4836840..4837523)	Alicycliphilus denitrificans K601	10485681
YP_004390423.1	CDS	Alide2_4605	NC_015422.1	4837665	4838558	R	SMART: CoA-binding; TIGRFAM: Succinyl-CoA ligase, alpha subunit; KEGG: dia:Dtpsy_3391 succinyl-CoA synthetase subunit alpha; PFAM: CoA-binding; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha	complement(4837665..4838558)	Alicycliphilus denitrificans K601	10485682
YP_004390424.1	CDS	Alide2_4606	NC_015422.1	4838580	4839740	R	TIGRFAM: Succinyl-CoA synthetase, beta subunit; KEGG: dia:Dtpsy_3392 succinyl-CoA synthetase subunit beta; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta	complement(4838580..4839740)	Alicycliphilus denitrificans K601	10485683
YP_004390425.1	CDS	Alide2_4607	NC_015422.1	4839914	4840846	D	SMART: Semialdehyde dehydrogenase, NAD-binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, type 2; KEGG: dia:Dtpsy_3393 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; N-acetyl-gamma-glutamyl-phosphate reductase	4839914..4840846	Alicycliphilus denitrificans K601	10485684
YP_004390426.1	CDS	Alide2_4608	NC_015422.1	4840955	4842094	R	KEGG: ajs:Ajs_4049 fis family transcriptional regulator; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; DNA protecting protein DprA	complement(4840955..4842094)	Alicycliphilus denitrificans K601	10485685
YP_004390427.1	CDS	Alide2_4609	NC_015422.1	4842117	4843337	R	KEGG: ajs:Ajs_4050 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidoglycan-binding lysin domain-containing protein	complement(4842117..4843337)	Alicycliphilus denitrificans K601	10485686
YP_004390428.1	CDS	Alide2_4610	NC_015422.1	4843537	4844052	D	TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: dia:Dtpsy_3396 peptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase	4843537..4844052	Alicycliphilus denitrificans K601	10485687
YP_004390429.1	CDS	Alide2_4611	NC_015422.1	4844049	4844534	D	KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane; hypothetical protein	4844049..4844534	Alicycliphilus denitrificans K601	10485688
YP_004390430.1	CDS	Alide2_4612	NC_015422.1	4844545	4845516	D	PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: ajs:Ajs_4053 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase	4844545..4845516	Alicycliphilus denitrificans K601	10485689
YP_004390431.1	CDS	Alide2_4613	NC_015422.1	4845513	4846262	D	PFAM: Branched-chain amino acid transport, permease; KEGG: ajs:Ajs_4054 AzlC family protein; AzlC family protein	4845513..4846262	Alicycliphilus denitrificans K601	10485690
YP_004390432.1	CDS	Alide2_4614	NC_015422.1	4846259	4846594	D	PFAM: Branched-chain amino acid transport, AzlD; KEGG: dia:Dtpsy_3400 branched-chain amino acid transport; branched-chain amino acid transport	4846259..4846594	Alicycliphilus denitrificans K601	10485691
YP_004390433.1	CDS	Alide2_4615	NC_015422.1	4846665	4847858	D	HAMAP: Phosphoglycerate kinase; KEGG: dia:Dtpsy_3401 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase	4846665..4847858	Alicycliphilus denitrificans K601	10485692
YP_004390434.1	CDS	Alide2_4616	NC_015422.1	4848018	4848704	D	KEGG: dac:Daci_0827 hypothetical protein; hypothetical protein	4848018..4848704	Alicycliphilus denitrificans K601	10485693
YP_004390435.1	CDS	Alide2_4617	NC_015422.1	4848701	4849255	D	KEGG: dac:Daci_0826 hypothetical protein; hypothetical protein	4848701..4849255	Alicycliphilus denitrificans K601	10485694
YP_004390436.1	CDS	Alide2_4618	NC_015422.1	4849369	4850250	R	PFAM: Drug/metabolite transporter; KEGG: dia:Dtpsy_3402 protein of unknown function DUF6 transmembrane; hypothetical protein	complement(4849369..4850250)	Alicycliphilus denitrificans K601	10485695
YP_004390437.1	CDS	Alide2_4619	NC_015422.1	4850300	4851124	D	SMART: Orotidine 5'-phosphate decarboxylase domain; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; KEGG: dia:Dtpsy_3403 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; orotidine 5'-phosphate decarboxylase	4850300..4851124	Alicycliphilus denitrificans K601	10485696
YP_004390438.1	CDS	Alide2_4620	NC_015422.1	4851141	4852037	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3404 transcriptional regulator, LysR family; LysR family transcriptional regulator	4851141..4852037	Alicycliphilus denitrificans K601	10485697
YP_004390439.1	CDS	Alide2_4621	NC_015422.1	4852157	4853149	D	KEGG: ajs:Ajs_4060 hypothetical protein; hypothetical protein	4852157..4853149	Alicycliphilus denitrificans K601	10485698
YP_004390440.1	CDS	Alide2_4622	NC_015422.1	4853146	4854120	D	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: dia:Dtpsy_3406 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase	4853146..4854120	Alicycliphilus denitrificans K601	10485699
YP_004390441.1	CDS	Alide2_4623	NC_015422.1	4854250	4856217	D	KEGG: aav:Aave_4703 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer	4854250..4856217	Alicycliphilus denitrificans K601	10485700
YP_004390442.1	CDS	Alide2_4624	NC_015422.1	4856252	4859320	R	TIGRFAM: Excinuclease ABC, A subunit; HAMAP: Excinuclease ABC, A subunit; KEGG: dia:Dtpsy_3409 excinuclease ABC, A subunit; PFAM: ABC transporter-like; UvrABC system protein A	complement(4856252..4859320)	Alicycliphilus denitrificans K601	10485701
YP_004390443.1	CDS	Alide2_4625	NC_015422.1	4859503	4860681	D	PFAM: Major facilitator superfamily MFS-1; KEGG: ajs:Ajs_4065 major facilitator superfamily transporter; major facilitator superfamily protein	4859503..4860681	Alicycliphilus denitrificans K601	10485702
YP_004390444.1	CDS	Alide2_4626	NC_015422.1	4860824	4861357	D	KEGG: ajs:Ajs_4066 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein	4860824..4861357	Alicycliphilus denitrificans K601	10485703
YP_004390445.1	CDS	Alide2_4627	NC_015422.1	4861464	4863125	R	KEGG: ajs:Ajs_4067 L-lactate transport; TIGRFAM: L-lactate permease; PFAM: L-lactate permease; L-lactate transport	complement(4861464..4863125)	Alicycliphilus denitrificans K601	10485704
YP_004390446.1	CDS	Alide2_4628	NC_015422.1	4863365	4864486	R	TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: dia:Dtpsy_3413 tRNA-specific 2-thiouridylase MnmA; PFAM: tRNA-specific 2-thiouridylase; tRNA-specific 2-thiouridylase mnmA	complement(4863365..4864486)	Alicycliphilus denitrificans K601	10485705
YP_004390447.1	CDS	Alide2_4629	NC_015422.1	4864483	4865469	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_0298 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4864483..4865469)	Alicycliphilus denitrificans K601	10485706
YP_004390448.1	CDS	Alide2_4630	NC_015422.1	4865528	4866616	D	PFAM: PrpF protein; KEGG: vei:Veis_0299 hypothetical protein; PrpF protein	4865528..4866616	Alicycliphilus denitrificans K601	10485707
YP_004390449.1	CDS	Alide2_4631	NC_015422.1	4866669	4867658	D	KEGG: vei:Veis_0300 hypothetical protein; hypothetical protein	4866669..4867658	Alicycliphilus denitrificans K601	10485708
YP_004390450.1	CDS	Alide2_4632	NC_015422.1	4867680	4868765	D	PFAM: Porin, Gram-negative type; KEGG: vei:Veis_0301 porin; porin	4867680..4868765	Alicycliphilus denitrificans K601	10485709
YP_004390451.1	CDS	Alide2_4633	NC_015422.1	4868843	4869787	D	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: pna:Pnap_3816 LysR family transcriptional regulator; LysR family transcriptional regulator	4868843..4869787	Alicycliphilus denitrificans K601	10485710
YP_004390452.1	CDS	Alide2_4634	NC_015422.1	4870025	4871461	D	KEGG: dia:Dtpsy_3415 tricarballylate dehydrogenase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobZ, precorrin 3B synthase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; precorrin 3B synthase CobZ	4870025..4871461	Alicycliphilus denitrificans K601	10485711
YP_004390453.1	CDS	Alide2_4635	NC_015422.1	4871448	4872635	D	TIGRFAM: Citrate utilization protein B; KEGG: ajs:Ajs_4071 CitB domain-containing protein; CitB domain-containing protein	4871448..4872635	Alicycliphilus denitrificans K601	10485712
YP_004390454.1	CDS	Alide2_4636	NC_015422.1	4872721	4873698	D	KEGG: dia:Dtpsy_3417 hypothetical protein; hypothetical protein	4872721..4873698	Alicycliphilus denitrificans K601	10485713
YP_004390455.1	CDS	Alide2_4637	NC_015422.1	4873741	4875417	R	KEGG: dia:Dtpsy_3418 sigma54 specific transcriptional regulator, fis family; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma54 specific transcriptional regulator	complement(4873741..4875417)	Alicycliphilus denitrificans K601	10485714
YP_004390456.1	CDS	Alide2_4638	NC_015422.1	4875579	4877126	D	KEGG: dia:Dtpsy_3419 propionyl-CoA carboxylase; PFAM: Carboxyl transferase; Propionyl-CoA carboxylase	4875579..4877126	Alicycliphilus denitrificans K601	10485715
YP_004390457.1	CDS	Alide2_4639	NC_015422.1	4877156	4878166	D	KEGG: dac:Daci_1098 hypothetical protein; hypothetical protein	4877156..4878166	Alicycliphilus denitrificans K601	10485716
YP_004390458.1	CDS	Alide2_4640	NC_015422.1	4878176	4880254	D	KEGG: dia:Dtpsy_3421 CoA-binding domain protein; PFAM: CoA-binding; SMART: CoA-binding; CoA-binding domain-containing protein	4878176..4880254	Alicycliphilus denitrificans K601	10485717
YP_004390459.1	CDS	Alide2_4641	NC_015422.1	4880251	4881618	D	PFAM: Carbamoyl-phosphate synthetase, large subunit, ATP-binding; Biotin carboxylase, C-terminal; Carbamoyl-phosphate synthase, large subunit, N-terminal; KEGG: dac:Daci_1096 carbamoyl-phosphate synthase subunit L; SMART: Biotin carboxylase, C-terminal; biotin carboxylase	4880251..4881618	Alicycliphilus denitrificans K601	10485718
YP_004390460.1	CDS	Alide2_4642	NC_015422.1	4881630	4881842	D	PFAM: Biotin/lipoyl attachment; KEGG: dia:Dtpsy_3423 biotin/lipoyl attachment domain-containing protein; biotin/lipoyl attachment domain-containing protein	4881630..4881842	Alicycliphilus denitrificans K601	10485719
YP_004390461.1	CDS	Alide2_4643	NC_015422.1	4881839	4882273	D	KEGG: dia:Dtpsy_3424 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	4881839..4882273	Alicycliphilus denitrificans K601	10485720
YP_004390462.1	CDS	Alide2_4644	NC_015422.1	4882300	4882785	R	PFAM: NUDIX hydrolase domain; KEGG: dia:Dtpsy_3425 NUDIX hydrolase; NUDIX hydrolase	complement(4882300..4882785)	Alicycliphilus denitrificans K601	10485721
YP_004390463.1	CDS	Alide2_4645	NC_015422.1	4882882	4883265	D	KEGG: dia:Dtpsy_3426 hypothetical protein; hypothetical protein	4882882..4883265	Alicycliphilus denitrificans K601	10485722
YP_004390464.1	CDS	Alide2_4646	NC_015422.1	4883375	4885492	D	KEGG: ajs:Ajs_4075 TonB-dependent copper receptor; TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; TonB-dependent copper receptor	4883375..4885492	Alicycliphilus denitrificans K601	10485723
YP_004390465.1	CDS	Alide2_4647	NC_015422.1	4885713	4886177	D	KEGG: met:M446_5737 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; phenylacetic acid degradation-like protein	4885713..4886177	Alicycliphilus denitrificans K601	10485724
YP_004390466.1	CDS	Alide2_4648	NC_015422.1	4886227	4887105	D	KEGG: bxe:Bxe_C0866 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	4886227..4887105	Alicycliphilus denitrificans K601	10485725
YP_004390467.1	CDS	Alide2_4649	NC_015422.1	4887140	4888117	R	KEGG: aav:Aave_3937 hypothetical protein; hypothetical protein	complement(4887140..4888117)	Alicycliphilus denitrificans K601	10485726
YP_004390468.1	CDS	Alide2_4650	NC_015422.1	4888153	4889346	R	KEGG: rpf:Rpic12D_1541 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; formyl-CoA transferase	complement(4888153..4889346)	Alicycliphilus denitrificans K601	10485727
YP_004390469.1	CDS	Alide2_4651	NC_015422.1	4889348	4890487	R	KEGG: pzu:PHZ_c2530 hypothetical protein; hypothetical protein	complement(4889348..4890487)	Alicycliphilus denitrificans K601	10485728
YP_004390470.1	CDS	Alide2_4652	NC_015422.1	4890527	4892077	R	KEGG: gka:GK2759 acetyl-CoA synthetase (acetate-CoA ligase); PFAM: AMP-dependent synthetase/ligase; acetate--CoA ligase	complement(4890527..4892077)	Alicycliphilus denitrificans K601	10485729
YP_004390471.1	CDS	Alide2_4653	NC_015422.1	4892324	4893031	R	TIGRFAM: Lumazine-binding protein; KEGG: ajs:Ajs_4077 riboflavin synthase subunit alpha; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha	complement(4892324..4893031)	Alicycliphilus denitrificans K601	10485730
YP_004390472.1	CDS	Alide2_4654	NC_015422.1	4893161	4893775	D	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: axy:AXYL_05416 LysE type translocator family protein 14; lysine exporter protein LysE/YggA	4893161..4893775	Alicycliphilus denitrificans K601	10485731
YP_004390473.1	CDS	Alide2_4655	NC_015422.1	4893782	4895155	R	KEGG: ajs:Ajs_4082 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; integral membrane sensor signal transduction histidine kinase	complement(4893782..4895155)	Alicycliphilus denitrificans K601	10485732
YP_004390474.1	CDS	Alide2_4656	NC_015422.1	4895408	4896085	R	KEGG: dia:Dtpsy_3431 two component transcriptional regulator, winged helix family; PFAM: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver domain; Signal transduction response regulator, C-terminal; winged helix family two component transcriptional regulator	complement(4895408..4896085)	Alicycliphilus denitrificans K601	10485733
YP_004390475.1	CDS	Alide2_4657	NC_015422.1	4896085	4896402	R	PFAM: Peptidase M4, propeptide, PepSY; KEGG: dia:Dtpsy_3432 propeptide PepSY amd peptidase M4; Propeptide PepSY amd peptidase M4	complement(4896085..4896402)	Alicycliphilus denitrificans K601	10485734
YP_004390476.1	CDS	Alide2_4658	NC_015422.1	4896541	4896852	D	KEGG: axy:AXYL_05206 hypothetical protein; hypothetical protein	4896541..4896852	Alicycliphilus denitrificans K601	10485735
YP_004390477.1	CDS	Alide2_4659	NC_015422.1	4896886	4898268	D	PFAM: Flavoprotein transmembrane component; FAD-binding 8; KEGG: dia:Dtpsy_3433 ferric reductase domain protein transmembrane component; ferric reductase domain-containing protein transmembrane component domain-containing protein	4896886..4898268	Alicycliphilus denitrificans K601	10485736
YP_004390478.1	CDS	Alide2_4660	NC_015422.1	4898344	4898898	D	PFAM: Cytochrome b/b6, N-terminal; KEGG: pag:PLES_43981 cytochrome b561; cytochrome b/b6 domain-containing protein	4898344..4898898	Alicycliphilus denitrificans K601	10485737
YP_004390479.1	CDS	Alide2_4661	NC_015422.1	4898947	4899315	D	KEGG: dia:Dtpsy_3434 hypothetical protein; hypothetical protein	4898947..4899315	Alicycliphilus denitrificans K601	10485738
YP_004390480.1	CDS	Alide2_4662	NC_015422.1	4899338	4899817	D	KEGG: ajs:Ajs_4087 hypothetical protein; hypothetical protein	4899338..4899817	Alicycliphilus denitrificans K601	10485739
YP_004390481.1	CDS	Alide2_4663	NC_015422.1	4899814	4902024	D	PFAM: Oxidoreductase FAD/NAD(P)-binding; Flavodoxin/nitric oxide synthase; PepSY-associated TM helix; Oxidoreductase, FAD-binding domain; KEGG: ajs:Ajs_4088 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein	4899814..4902024	Alicycliphilus denitrificans K601	10485740
YP_004390482.1	CDS	Alide2_4664	NC_015422.1	4902005	4902982	D	PFAM: Thiamine synthesis ApbE/UPF0280; KEGG: dia:Dtpsy_3437 ApbE family lipoprotein; ApbE family lipoprotein	4902005..4902982	Alicycliphilus denitrificans K601	10485741
YP_004390483.1	CDS	Alide2_4665	NC_015422.1	4903084	4903389	D	KEGG: ajs:Ajs_4090 hypothetical protein; hypothetical protein	4903084..4903389	Alicycliphilus denitrificans K601	10485742
YP_004390484.1	CDS	Alide2_4666	NC_015422.1	4903405	4903872	R	KEGG: ajs:Ajs_4091 hypothetical protein; hypothetical protein	complement(4903405..4903872)	Alicycliphilus denitrificans K601	10485743
YP_004390485.1	CDS	Alide2_4667	NC_015422.1	4903944	4906493	D	SMART: ATPase, P-type cation-transporter, N-terminal; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; KEGG: dia:Dtpsy_3444 ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: ATPase, P-type, ATPase-associated domain; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type (transporting) HAD superfamily ATPase	4903944..4906493	Alicycliphilus denitrificans K601	10485744
YP_004390486.1	CDS	Alide2_4668	NC_015422.1	4907159	4907299	D	hypothetical protein	4907159..4907299	Alicycliphilus denitrificans K601	10485745
YP_004390487.1	CDS	Alide2_4670	NC_015422.1	4907984	4909078	R	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bpt:Bpet0267 hypothetical protein; 2-nitropropane dioxygenase NPD	complement(4907984..4909078)	Alicycliphilus denitrificans K601	10485747
YP_004390488.1	CDS	Alide2_4671	NC_015422.1	4909080	4910051	R	KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein	complement(4909080..4910051)	Alicycliphilus denitrificans K601	10485748
YP_004390489.1	CDS	Alide2_4672	NC_015422.1	4910081	4911235	R	KEGG: bpt:Bpet0266 acyl-CoA dehydrogenase; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; butyryl-CoA dehydrogenase	complement(4910081..4911235)	Alicycliphilus denitrificans K601	10485749
YP_004390490.1	CDS	Alide2_4673	NC_015422.1	4911254	4912063	R	KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(4911254..4912063)	Alicycliphilus denitrificans K601	10485750
YP_004390491.1	CDS	Alide2_4674	NC_015422.1	4912253	4913593	D	KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase	4912253..4913593	Alicycliphilus denitrificans K601	10485751
YP_004390492.1	CDS	Alide2_4675	NC_015422.1	4913611	4914612	D	TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, C-terminal; KEGG: bpt:Bpet0263 alcohol dehydrogenase III; SMART: Polyketide synthase, enoylreductase; YhdH/YhfP family quinone oxidoreductase	4913611..4914612	Alicycliphilus denitrificans K601	10485752
YP_004390493.1	CDS	Alide2_4677	NC_015422.1	4914842	4916074	R	KEGG: sth:STH2463 acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase	complement(4914842..4916074)	Alicycliphilus denitrificans K601	10485754
YP_004390494.1	CDS	Alide2_4678	NC_015422.1	4916088	4917074	R	KEGG: bpt:Bpetpseudo_01 hypothetical protein; hypothetical protein	complement(4916088..4917074)	Alicycliphilus denitrificans K601	10485755
YP_004390495.1	CDS	Alide2_4679	NC_015422.1	4917112	4917972	R	KEGG: bpt:Bpet0265 IclR family transcriptional regulator; PFAM: Transcription regulator IclR, N-terminal; Transcription regulator IclR, C-terminal; SMART: Transcription regulator IclR, N-terminal; IclR family transcriptional regulator	complement(4917112..4917972)	Alicycliphilus denitrificans K601	10485756
YP_004390496.1	CDS	Alide2_4680	NC_015422.1	4918057	4919292	D	KEGG: bpt:Bpet0264 acyl_CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; formyl-CoA transferase	4918057..4919292	Alicycliphilus denitrificans K601	10485757
YP_004390497.1	CDS	Alide2_4681	NC_015422.1	4919289	4920230	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: vei:Veis_4196 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4919289..4920230)	Alicycliphilus denitrificans K601	10485758
YP_004390498.1	CDS	Alide2_4682	NC_015422.1	4920337	4921323	D	KEGG: vap:Vapar_1641 hypothetical protein; hypothetical protein	4920337..4921323	Alicycliphilus denitrificans K601	10485759
YP_004390499.1	CDS	Alide2_4683	NC_015422.1	4921335	4922954	D	TIGRFAM: Gamma-glutamyltranspeptidase; KEGG: vap:Vapar_1640 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase	4921335..4922954	Alicycliphilus denitrificans K601	10485760
YP_004390500.1	CDS	Alide2_4684	NC_015422.1	4922970	4923632	R	hypothetical protein	complement(4922970..4923632)	Alicycliphilus denitrificans K601	10485761
YP_004390501.1	CDS	Alide2_4685	NC_015422.1	4923785	4925452	R	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: ajs:Ajs_4093 twin-arginine translocation pathway signal; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein	complement(4923785..4925452)	Alicycliphilus denitrificans K601	10485762
YP_004390502.1	CDS	Alide2_4686	NC_015422.1	4925452	4927005	R	HAMAP: Spermine synthase; KEGG: dia:Dtpsy_3446 spermidine synthase; PFAM: Spermine synthase; spermidine synthase	complement(4925452..4927005)	Alicycliphilus denitrificans K601	10485763
YP_004390503.1	CDS	Alide2_4687	NC_015422.1	4927019	4927240	R	PFAM: Protein of unknown function DUF350; KEGG: dia:Dtpsy_3447 protein of unknown function DUF350; hypothetical protein	complement(4927019..4927240)	Alicycliphilus denitrificans K601	10485764
YP_004390504.1	CDS	Alide2_4688	NC_015422.1	4927277	4928761	R	KEGG: dia:Dtpsy_3448 putative transmembrane protein; putative transmembrane protein	complement(4927277..4928761)	Alicycliphilus denitrificans K601	10485765
YP_004390505.1	CDS	Alide2_4689	NC_015422.1	4928830	4929867	R	PFAM: Band 7 protein; KEGG: ajs:Ajs_4099 putative transmembrane protein; hypothetical protein	complement(4928830..4929867)	Alicycliphilus denitrificans K601	10485766
YP_004390506.1	CDS	Alide2_4690	NC_015422.1	4930036	4930344	D	PFAM: Protein of unknown function DUF2061, membrane; KEGG: dia:Dtpsy_3450 hypothetical protein; hypothetical protein	4930036..4930344	Alicycliphilus denitrificans K601	10485767
YP_004390507.1	CDS	Alide2_4691	NC_015422.1	4930266	4930589	R	PFAM: Flagellar basal body rod protein, N-terminal; Domain of unknown function DUF1078, C-terminal; KEGG: dia:Dtpsy_3453 flagellar basal body rod protein; flagellar basal body rod protein	complement(4930266..4930589)	Alicycliphilus denitrificans K601	10485768
YP_004390508.1	CDS	Alide2_4692	NC_015422.1	4930651	4931595	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: dia:Dtpsy_3454 transcriptional regulator, LysR family; LysR family transcriptional regulator	complement(4930651..4931595)	Alicycliphilus denitrificans K601	10485769
YP_004390509.1	CDS	Alide2_4693	NC_015422.1	4931687	4933042	D	KEGG: xtr:100492879 omega-amino acid--pyruvate aminotransferase-like; PFAM: Aminotransferase class-III; beta-alanine--pyruvate transaminase	4931687..4933042	Alicycliphilus denitrificans K601	10485770
YP_004390510.1	CDS	Alide2_4694	NC_015422.1	4933112	4934629	D	TIGRFAM: Methylmalonate-semialdehyde dehydrogenase; KEGG: dia:Dtpsy_3456 methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde dehydrogenase domain; methylmalonate-semialdehyde dehydrogenase	4933112..4934629	Alicycliphilus denitrificans K601	10485771
YP_004390511.1	CDS	Alide2_4695	NC_015422.1	4934721	4935854	D	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; MASE2; KEGG: aav:Aave_4748 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	4934721..4935854	Alicycliphilus denitrificans K601	10485772
YP_004390512.1	CDS	Alide2_4696	NC_015422.1	4935867	4936706	R	KEGG: dia:Dtpsy_3457 GntR domain protein; PFAM: GntR, C-terminal; HTH transcriptional regulator, GntR; SMART: GntR, C-terminal; HTH transcriptional regulator, GntR; GntR family transcriptional regulator	complement(4935867..4936706)	Alicycliphilus denitrificans K601	10485773
YP_004390513.1	CDS	Alide2_4697	NC_015422.1	4936928	4938133	D	KEGG: dia:Dtpsy_3458 extracellular ligand-binding receptor; extracellular ligand-binding receptor	4936928..4938133	Alicycliphilus denitrificans K601	10485774
YP_004390514.1	CDS	Alide2_4698	NC_015422.1	4938168	4939028	D	PFAM: ABC transporter permease; KEGG: dia:Dtpsy_3459 inner-membrane translocator; ABC transporter permease	4938168..4939028	Alicycliphilus denitrificans K601	10485775
YP_004390515.1	CDS	Alide2_4699	NC_015422.1	4939034	4940029	D	PFAM: ABC transporter permease; KEGG: dac:Daci_6025 inner-membrane translocator; ABC transporter permease	4939034..4940029	Alicycliphilus denitrificans K601	10485776
YP_004390516.1	CDS	Alide2_4700	NC_015422.1	4940026	4940808	D	PFAM: ABC transporter-like; KEGG: dia:Dtpsy_3461 ABC transporter related; SMART: ATPase, AAA+ type, core; monosaccharide-transporting ATPase	4940026..4940808	Alicycliphilus denitrificans K601	10485777
YP_004390517.1	CDS	Alide2_4701	NC_015422.1	4940805	4941581	D	KEGG: dac:Daci_6027 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter	4940805..4941581	Alicycliphilus denitrificans K601	10485778
YP_004390518.1	CDS	Alide2_4702	NC_015422.1	4941595	4942851	D	TIGRFAM: Amidase, hydantoinase/carbamoylase; KEGG: dia:Dtpsy_3463 amidase, hydantoinase/carbamoylase family; PFAM: Peptidase M20; Peptidase M20, dimerisation; hydantoinase/carbamoylase family amidase	4941595..4942851	Alicycliphilus denitrificans K601	10485779
YP_004390519.1	CDS	Alide2_4703	NC_015422.1	4942848	4944314	D	PFAM: Microcystin LR degradation protein MlrC, N-terminal; Microcystin LR degradation protein MlrC, C-terminal; KEGG: dia:Dtpsy_3464 microcystin LR degradation protein MlrC-like protein; Microcystin LR degradation protein MlrC	4942848..4944314	Alicycliphilus denitrificans K601	10485780
YP_004390520.1	CDS	Alide2_4704	NC_015422.1	4944462	4946771	D	KEGG: dia:Dtpsy_3465 malic enzyme; PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD-binding; Malic enzyme, N-terminal; SMART: Malic enzyme, NAD-binding; phosphate acetyl/butaryl transferase	4944462..4946771	Alicycliphilus denitrificans K601	10485781
YP_004390521.1	CDS	Alide2_4705	NC_015422.1	4946905	4947309	D	PFAM: Guanine-specific ribonuclease N1/T1; KEGG: dia:Dtpsy_3466 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1	4946905..4947309	Alicycliphilus denitrificans K601	10485782
YP_004390522.1	CDS	Alide2_4706	NC_015422.1	4947450	4947875	D	PFAM: Barstar (barnase inhibitor); KEGG: dia:Dtpsy_3467 barstar (barnase inhibitor); Barstar (barnase inhibitor)	4947450..4947875	Alicycliphilus denitrificans K601	10485783
YP_004390523.1	CDS	Alide2_4707	NC_015422.1	4948105	4948872	R	TIGRFAM: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; KEGG: dia:Dtpsy_3468 dimethyladenosine transferase; SMART: Ribosomal RNA adenine methylase transferase, N-terminal; dimethyladenosine transferase	complement(4948105..4948872)	Alicycliphilus denitrificans K601	10485784
YP_004390524.1	CDS	Alide2_4708	NC_015422.1	4948869	4950284	R	KEGG: dia:Dtpsy_3469 SurA domain protein; HAMAP: Peptidyl-prolyl isomerase SurA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; chaperone surA	complement(4948869..4950284)	Alicycliphilus denitrificans K601	10485785
YP_004390525.1	CDS	Alide2_4709	NC_015422.1	4950318	4952762	R	KEGG: dia:Dtpsy_3470 organic solvent tolerance protein; HAMAP: Lipopolysccharide assembly, LptD; PFAM: Organic solvent tolerance protein, C-terminal; LPS-assembly protein lptD	complement(4950318..4952762)	Alicycliphilus denitrificans K601	10485786
YP_004390526.1	CDS	Alide2_4710	NC_015422.1	4952836	4953951	D	PFAM: Aminoglycoside phosphotransferase; KEGG: ajs:Ajs_4113 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase	4952836..4953951	Alicycliphilus denitrificans K601	10485787
YP_004390527.1	CDS	Alide2_4711	NC_015422.1	4954019	4954732	D	KEGG: dia:Dtpsy_3472 16S ribosomal RNA methyltransferase RsmE; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; PFAM: Ribosomal RNA small subunit methyltransferase E; ribosomal RNA small subunit methyltransferase E	4954019..4954732	Alicycliphilus denitrificans K601	10485788
YP_004390528.1	CDS	Alide2_4712	NC_015422.1	4954732	4956066	D	KEGG: dia:Dtpsy_3473 hypothetical protein; hypothetical protein	4954732..4956066	Alicycliphilus denitrificans K601	10485789
YP_004390529.1	CDS	Alide2_4713	NC_015422.1	4956059	4956763	D	KEGG: ajs:Ajs_4116 hypothetical protein; hypothetical protein	4956059..4956763	Alicycliphilus denitrificans K601	10485790
YP_004390530.1	CDS	Alide2_4714	NC_015422.1	4956764	4959601	D	PFAM: RecF/RecN/SMC; KEGG: dia:Dtpsy_3475 SMC domain protein; SMC domain-containing protein	4956764..4959601	Alicycliphilus denitrificans K601	10485791
YP_004390531.1	CDS	Alide2_4715	NC_015422.1	4959674	4961137	R	PFAM: Peptidase M20; Peptidase M20, dimerisation; KEGG: dia:Dtpsy_3479 peptidase M20; peptidase M20	complement(4959674..4961137)	Alicycliphilus denitrificans K601	10485792
YP_004390532.1	CDS	Alide2_4716	NC_015422.1	4961211	4962398	R	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: dia:Dtpsy_3480 diguanylate cyclase; SMART: Diguanylate cyclase, predicted; diguanylate cyclase	complement(4961211..4962398)	Alicycliphilus denitrificans K601	10485793
YP_004390533.1	CDS	Alide2_4717	NC_015422.1	4962608	4963192	R	KEGG: dia:Dtpsy_3482 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW; methionine biosynthesis protein MetW	complement(4962608..4963192)	Alicycliphilus denitrificans K601	10485794
YP_004390534.1	CDS	Alide2_4718	NC_015422.1	4963189	4964319	R	TIGRFAM: Homoserine acetyltransferase; KEGG: ajs:Ajs_4125 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; homoserine O-acetyltransferase	complement(4963189..4964319)	Alicycliphilus denitrificans K601	10485795
YP_004390535.1	CDS	Alide2_4719	NC_015422.1	4964452	4965030	R	PFAM: Uncharacterised protein family UPF0016; KEGG: dia:Dtpsy_3484 protein of unknown function UPF0016; hypothetical protein	complement(4964452..4965030)	Alicycliphilus denitrificans K601	10485796
YP_004390536.1	CDS	Alide2_4720	NC_015422.1	4965502	4965852	D	KEGG: dia:Dtpsy_3485 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein	4965502..4965852	Alicycliphilus denitrificans K601	10485797
YP_004390537.1	CDS	Alide2_4721	NC_015422.1	4966088	4966522	D	KEGG: ajs:Ajs_4128 RNP-1 like RNA-binding protein; PFAM: RNA recognition motif domain; SMART: RNA recognition motif domain; RNP-1 like RNA-binding protein	4966088..4966522	Alicycliphilus denitrificans K601	10485798
YP_004390538.1	CDS	Alide2_4722	NC_015422.1	4966609	4967403	R	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_4129 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR	complement(4966609..4967403)	Alicycliphilus denitrificans K601	10485799
YP_004390539.1	CDS	Alide2_4723	NC_015422.1	4967414	4968055	R	PFAM: Lipopolysccharide assembly, LptC-related; KEGG: dia:Dtpsy_3488 protein of unknown function DUF1239; hypothetical protein	complement(4967414..4968055)	Alicycliphilus denitrificans K601	10485800
YP_004390540.1	CDS	Alide2_4724	NC_015422.1	4968052	4968624	R	TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; KEGG: dia:Dtpsy_3489 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; PFAM: HAD superfamily hydrolase-like, type 3; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	complement(4968052..4968624)	Alicycliphilus denitrificans K601	10485801
YP_004390541.1	CDS	Alide2_4725	NC_015422.1	4968624	4969625	R	SMART: Cystathionine beta-synthase, core; TIGRFAM: KpsF/GutQ; KEGG: ajs:Ajs_4132 KpsF/GutQ family protein; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; KpsF/GutQ family protein	complement(4968624..4969625)	Alicycliphilus denitrificans K601	10485802
YP_004390542.1	CDS	Alide2_4726	NC_015422.1	4969674	4971659	D	PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: ajs:Ajs_4133 potassium efflux system protein; sodium/hydrogen exchanger	4969674..4971659	Alicycliphilus denitrificans K601	10485803
YP_004390543.1	CDS	Alide2_4727	NC_015422.1	4971697	4972251	D	TIGRFAM: Adenine phosphoribosyl transferase; HAMAP: Adenine phosphoribosyl transferase; KEGG: dia:Dtpsy_3492 adenine phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; adenine phosphoribosyltransferase	4971697..4972251	Alicycliphilus denitrificans K601	10485804
YP_004390544.1	CDS	Alide2_4728	NC_015422.1	4972298	4973185	R	KEGG: ajs:Ajs_4136 hypothetical protein; hypothetical protein	complement(4972298..4973185)	Alicycliphilus denitrificans K601	10485805
YP_004390545.1	CDS	Alide2_4729	NC_015422.1	4973308	4973793	R	KEGG: dia:Dtpsy_3494 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain; SMART: Cyclic nucleotide-binding domain; putative Crp/Fnr family transcriptional regulator	complement(4973308..4973793)	Alicycliphilus denitrificans K601	10485806
YP_004390546.1	CDS	Alide2_4730	NC_015422.1	4973876	4975273	R	TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: ajs:Ajs_4138 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; tRNA modification GTPase mnmE	complement(4973876..4975273)	Alicycliphilus denitrificans K601	10485807
YP_004390547.1	CDS	Alide2_4731	NC_015422.1	4975351	4976238	R	KEGG: aav:Aave_1937 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein	complement(4975351..4976238)	Alicycliphilus denitrificans K601	10485808
YP_004390548.1	CDS	Alide2_4732	NC_015422.1	4976508	4977704	D	KEGG: vap:Vapar_1545 D-amino-acid dehydrogenase; PFAM: FAD dependent oxidoreductase; D-amino-acid dehydrogenase	4976508..4977704	Alicycliphilus denitrificans K601	10485809
YP_004390549.1	CDS	Alide2_4733	NC_015422.1	4977708	4978613	R	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: aav:Aave_1935 LysR family transcriptional regulator; LysR family transcriptional regulator	complement(4977708..4978613)	Alicycliphilus denitrificans K601	10485810
YP_004390550.1	CDS	Alide2_4734	NC_015422.1	4978642	4979382	R	KEGG: aav:Aave_1663 aspartate racemase; TIGRFAM: Aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; aspartate racemase	complement(4978642..4979382)	Alicycliphilus denitrificans K601	10485811
YP_004390551.1	CDS	Alide2_4735	NC_015422.1	4979379	4980197	R	PFAM: Peptidase M55, D-aminopeptidase; KEGG: aav:Aave_1662 D-aminopeptidase DppA; peptidase M55 D-aminopeptidase	complement(4979379..4980197)	Alicycliphilus denitrificans K601	10485812
YP_004390552.1	CDS	Alide2_4736	NC_015422.1	4980262	4981299	R	PFAM: Peptidase S58, DmpA; KEGG: aav:Aave_1661 aminopeptidase DmpA; peptidase S58 DmpA	complement(4980262..4981299)	Alicycliphilus denitrificans K601	10485813
YP_004390553.1	CDS	Alide2_4737	NC_015422.1	4981296	4982204	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1660 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(4981296..4982204)	Alicycliphilus denitrificans K601	10485814
YP_004390554.1	CDS	Alide2_4738	NC_015422.1	4982212	4983132	R	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1659 binding-protein-dependent transport systems inner membrane component; ABC transporter permease	complement(4982212..4983132)	Alicycliphilus denitrificans K601	10485815
YP_004390555.1	CDS	Alide2_4739	NC_015422.1	4983201	4984745	R	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: aav:Aave_1658 extracellular solute-binding protein; ABC transporter substrate-binding protein	complement(4983201..4984745)	Alicycliphilus denitrificans K601	10485816
YP_004390556.1	CDS	Alide2_4740	NC_015422.1	4984837	4986711	R	TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; KEGG: aav:Aave_1657 oligopeptide/dipeptide ABC transporter, ATPase subunit; SMART: ATPase, AAA+ type, core; peptide ABC transporter ATPase	complement(4984837..4986711)	Alicycliphilus denitrificans K601	10485817
YP_004390557.1	CDS	Alide2_4741	NC_015422.1	4986728	4987726	R	KEGG: aav:Aave_1656 asparaginase; PFAM: Peptidase T2, asparaginase 2; beta-aspartyl-peptidase	complement(4986728..4987726)	Alicycliphilus denitrificans K601	10485818
YP_004390558.1	CDS	Alide2_4742	NC_015422.1	4987723	4988655	R	PFAM: Sugar isomerase (SIS); Helix-turn-helix protein RpiR; KEGG: aav:Aave_1655 RpiR family transcriptional regulator; RpiR family transcriptional regulator	complement(4987723..4988655)	Alicycliphilus denitrificans K601	10485819
YP_004390559.1	CDS	Alide2_4745	NC_015422.1	4990775	4992361	R	PFAM: Bacterial extracellular solute-binding protein, family 5; KEGG: ajs:Ajs_4139 extracellular solute-binding protein; ABC transporter substrate-binding protein	complement(4990775..4992361)	Alicycliphilus denitrificans K601	10485822
YP_004390560.1	CDS	Alide2_4746	NC_015422.1	4992469	4994163	R	KEGG: dia:Dtpsy_3542 YidC translocase/secretase; TIGRFAM: Membrane insertion protein, OxaA/YidC, bacterial; Membrane insertion protein, OxaA/YidC; PFAM: Membrane insertion protein, OxaA/YidC; membrane protein insertase, YidC/Oxa1 family domain-containing	complement(4992469..4994163)	Alicycliphilus denitrificans K601	10485823
YP_004390561.1	CDS	Alide2_4747	NC_015422.1	4994160	4994453	R	KEGG: ajs:Ajs_4141 hypothetical protein; TIGRFAM: Protein of unknown function DUF37; PFAM: Protein of unknown function DUF37; hypothetical protein	complement(4994160..4994453)	Alicycliphilus denitrificans K601	10485824
YP_004390562.1	CDS	Alide2_4748	NC_015422.1	4994450	4994890	R	PFAM: Ribonuclease P; KEGG: dia:Dtpsy_3544 hypothetical protein; ribonuclease P protein	complement(4994450..4994890)	Alicycliphilus denitrificans K601	10485825
YP_004390563.1	CDS	Alide2_4749	NC_015422.1	4994933	4995067	R	TIGRFAM: Ribosomal protein L34; HAMAP: Ribosomal protein L34; KEGG: vei:Veis_5015 50S ribosomal protein L34; PFAM: Ribosomal protein L34; 50S ribosomal protein L34	complement(4994933..4995067)	Alicycliphilus denitrificans K601	10485826
YP_004390564.1	CDS	Alide2_4750	NC_015423.1	17	394	D	KEGG: ajs:Ajs_4195 hypothetical protein; hypothetical protein	17..394	Alicycliphilus denitrificans K601	10485917
YP_004390565.1	CDS	Alide2_4751	NC_015423.1	396	2393	D	PFAM: Type IV secretion system, TraD, DNA-binding domain; Ti-type conjugative transfer system, TraG-like; KEGG: ajs:Ajs_4194 hypothetical protein; type IV secretion system protein TraD	396..2393	Alicycliphilus denitrificans K601	10485829
YP_004390566.1	CDS	Alide2_4752	NC_015423.1	2405	2860	D	KEGG: ajs:Ajs_4193 putative thiol:disulfide interchange transmembrane protein; putative thiol:disulfide interchange transmembrane protein	2405..2860	Alicycliphilus denitrificans K601	10485830
YP_004390567.1	CDS	Alide2_4753	NC_015423.1	2857	5742	D	KEGG: ajs:Ajs_4192 TrwC protein; TIGRFAM: Conjugative relaxase, N-terminal; PFAM: TrwC relaxase; conjugative relaxase domain-containing protein	2857..5742	Alicycliphilus denitrificans K601	10485831
YP_004390568.1	CDS	Alide2_4754	NC_015423.1	5884	6096	D	hypothetical protein	5884..6096	Alicycliphilus denitrificans K601	10485832
YP_004390569.1	CDS	Alide2_4755	NC_015423.1	6187	7041	D	PFAM: YheO-like; KEGG: ajs:Ajs_4191 hypothetical protein; YheO-like domain-containing protein	6187..7041	Alicycliphilus denitrificans K601	10485833
YP_004390570.1	CDS	Alide2_4756	NC_015423.1	7074	7349	D	PFAM: Protein of unknown function DUF1805; KEGG: ajs:Ajs_4190 hypothetical protein; hypothetical protein	7074..7349	Alicycliphilus denitrificans K601	10485834
YP_004390571.1	CDS	Alide2_4757	NC_015423.1	7358	8326	D	KEGG: ajs:Ajs_4189 integral membrane sensor signal transduction histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; integral membrane sensor signal transduction histidine kinase	7358..8326	Alicycliphilus denitrificans K601	10485835
YP_004390572.1	CDS	Alide2_4758	NC_015423.1	8295	8954	R	KEGG: ajs:Ajs_4188 two component LuxR family transcriptional regulator; PFAM: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; SMART: Signal transduction response regulator, receiver domain; Transcription regulator LuxR, C-terminal; two component LuxR family transcriptional regulator	complement(8295..8954)	Alicycliphilus denitrificans K601	10485836
YP_004390573.1	CDS	Alide2_4759	NC_015423.1	9438	9938	D	PFAM: Lytic transglycosylase-like, catalytic; KEGG: ajs:Ajs_4187 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit	9438..9938	Alicycliphilus denitrificans K601	10485837
YP_004390574.1	CDS	Alide2_4760	NC_015423.1	9940	10323	D	KEGG: ajs:Ajs_4186 hypothetical protein; hypothetical protein	9940..10323	Alicycliphilus denitrificans K601	10485838
YP_004390575.1	CDS	Alide2_4761	NC_015423.1	10418	10750	D	PFAM: Conjugal transfer,TrbC; KEGG: ajs:Ajs_4185 hypothetical protein; Conjugal transfer protein TrbC	10418..10750	Alicycliphilus denitrificans K601	10485839
YP_004390576.1	CDS	Alide2_4762	NC_015423.1	10766	11059	D	KEGG: ajs:Ajs_4184 hypothetical protein; TIGRFAM: Type IV conjugative transfer system, protein TraL; PFAM: Type IV conjugative transfer system, protein TraL; type IV conjugative transfer system protein TraL	10766..11059	Alicycliphilus denitrificans K601	10485840
YP_004390577.1	CDS	Alide2_4763	NC_015423.1	11074	11667	D	KEGG: ajs:Ajs_4183 hypothetical protein; hypothetical protein	11074..11667	Alicycliphilus denitrificans K601	10485841
YP_004390578.1	CDS	Alide2_4764	NC_015423.1	11777	12340	D	KEGG: ajs:Ajs_4182 hypothetical protein; hypothetical protein	11777..12340	Alicycliphilus denitrificans K601	10485842
YP_004390579.1	CDS	Alide2_4765	NC_015423.1	12333	13682	D	PFAM: Type IV secretion system, VirB10 / TraB / TrbI; KEGG: ajs:Ajs_4181 TraB pilus assembly family protein; conjugation TrbI family protein	12333..13682	Alicycliphilus denitrificans K601	10485843
YP_004390580.1	CDS	Alide2_4766	NC_015423.1	13675	14424	D	PFAM: Disulphide bond isomerase, DsbC/G, N-terminal; KEGG: ajs:Ajs_4180 protein-disulfide isomerase; disulfide bond isomerase, DsbC/G	13675..14424	Alicycliphilus denitrificans K601	10485844
YP_004390581.1	CDS	Alide2_4767	NC_015423.1	14421	14570	D	hypothetical protein	14421..14570	Alicycliphilus denitrificans K601	10485845
YP_004390582.1	CDS	Alide2_4768	NC_015423.1	14567	15217	D	KEGG: ajs:Ajs_4179 membrane lipoprotein lipid attachment site; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV	14567..15217	Alicycliphilus denitrificans K601	10485846
YP_004390583.1	CDS	Alide2_4769	NC_015423.1	15255	17879	D	TIGRFAM: Type-IV secretion system protein TraC; KEGG: ajs:Ajs_4178 hypothetical protein; type-IV secretion system protein TraC	15255..17879	Alicycliphilus denitrificans K601	10485847
YP_004390584.1	CDS	Alide2_4770	NC_015423.1	17869	18297	D	KEGG: ajs:Ajs_4177 hypothetical protein; hypothetical protein	17869..18297	Alicycliphilus denitrificans K601	10485848
YP_004390585.1	CDS	Alide2_4771	NC_015423.1	18297	18773	D	PFAM: Peptidase S26, conserved region; KEGG: ajs:Ajs_4176 hypothetical protein; peptidase S26	18297..18773	Alicycliphilus denitrificans K601	10485849
YP_004390586.1	CDS	Alide2_4772	NC_015423.1	18760	19398	D	TIGRFAM: Type-F conjugative transfer system protein TraW; KEGG: ajs:Ajs_4175 hypothetical protein; type-F conjugative transfer system protein TraW	18760..19398	Alicycliphilus denitrificans K601	10485850
YP_004390587.1	CDS	Alide2_4773	NC_015423.1	19395	20396	D	PFAM: TraU; KEGG: ajs:Ajs_4174 TraU family protein; TraU family protein	19395..20396	Alicycliphilus denitrificans K601	10485851
YP_004390588.1	CDS	Alide2_4774	NC_015423.1	20396	21172	D	KEGG: ajs:Ajs_4173 hypothetical protein; TIGRFAM: Type-F conjugative transfer system pilin assembly protein TrbC, subgroup; PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; type-F conjugative transfer system pilin assembly protein TrbC	20396..21172	Alicycliphilus denitrificans K601	10485852
YP_004390589.1	CDS	Alide2_4775	NC_015423.1	21169	22467	D	KEGG: ajs:Ajs_4172 hypothetical protein; hypothetical protein	21169..22467	Alicycliphilus denitrificans K601	10485853
YP_004390590.1	CDS	Alide2_4776	NC_015423.1	22464	23708	D	PFAM: Mating pair stabilisation TraN; KEGG: ajs:Ajs_4171 conjugal transfer mating pair stabilization protein TraN; Mating pair stabilization TraN	22464..23708	Alicycliphilus denitrificans K601	10485854
YP_004390591.1	CDS	Alide2_4777	NC_015423.1	23705	24067	D	KEGG: ajs:Ajs_4170 hypothetical protein; hypothetical protein	23705..24067	Alicycliphilus denitrificans K601	10485855
YP_004390592.1	CDS	Alide2_4778	NC_015423.1	24072	24884	D	KEGG: ajs:Ajs_4169 hypothetical protein; hypothetical protein	24072..24884	Alicycliphilus denitrificans K601	10485856
YP_004390593.1	CDS	Alide2_4779	NC_015423.1	24895	26301	D	PFAM: Type IV conjugative transfer system protein TraH; KEGG: ajs:Ajs_4168 TraH family protein; TraH family protein	24895..26301	Alicycliphilus denitrificans K601	10485857
YP_004390594.1	CDS	Alide2_4780	NC_015423.1	26313	29360	D	PFAM: TraG-like, N-terminal; KEGG: ajs:Ajs_4167 TraG domain-containing protein; TraG domain-containing protein	26313..29360	Alicycliphilus denitrificans K601	10485858
YP_004390595.1	CDS	Alide2_4781	NC_015423.1	29696	29950	R	KEGG: ajs:Ajs_4166 hypothetical protein; hypothetical protein	complement(29696..29950)	Alicycliphilus denitrificans K601	10485859
YP_004390596.1	CDS	Alide2_4782	NC_015423.1	30439	31164	D	PFAM: Peptidase M48; KEGG: ajs:Ajs_4164 peptidase M48, Ste24p; peptidase M48 Ste24p	30439..31164	Alicycliphilus denitrificans K601	10485860
YP_004390597.1	CDS	Alide2_4783	NC_015423.1	31172	31432	D	KEGG: ajs:Ajs_4163 hypothetical protein; hypothetical protein	31172..31432	Alicycliphilus denitrificans K601	10485861
YP_004390598.1	CDS	Alide2_4784	NC_015423.1	31432	31851	D	KEGG: ajs:Ajs_4247 hypothetical protein; hypothetical protein	31432..31851	Alicycliphilus denitrificans K601	10485862
YP_004390599.1	CDS	Alide2_4785	NC_015423.1	31848	32372	D	KEGG: ajs:Ajs_4246 hypothetical protein; hypothetical protein	31848..32372	Alicycliphilus denitrificans K601	10485863
YP_004390600.1	CDS	Alide2_4786	NC_015423.1	32396	32764	D	KEGG: ajs:Ajs_4245 hypothetical protein; hypothetical protein	32396..32764	Alicycliphilus denitrificans K601	10485864
YP_004390601.1	CDS	Alide2_4787	NC_015423.1	32890	33135	D	KEGG: ajs:Ajs_4244 hypothetical protein; hypothetical protein	32890..33135	Alicycliphilus denitrificans K601	10485865
YP_004390602.1	CDS	Alide2_4788	NC_015423.1	33148	33375	D	KEGG: ajs:Ajs_4243 hypothetical protein; hypothetical protein	33148..33375	Alicycliphilus denitrificans K601	10485866
YP_004390603.1	CDS	Alide2_4789	NC_015423.1	33372	34460	D	PFAM: Filamentation induced by cAMP/death on curing-related; KEGG: ajs:Ajs_4242 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic	33372..34460	Alicycliphilus denitrificans K601	10485867
YP_004390604.1	CDS	Alide2_4790	NC_015423.1	34493	34954	D	KEGG: ajs:Ajs_4241 hypothetical protein; hypothetical protein	34493..34954	Alicycliphilus denitrificans K601	10485868
YP_004390605.1	CDS	Alide2_4791	NC_015423.1	34967	35227	D	KEGG: ajs:Ajs_4240 hypothetical protein; hypothetical protein	34967..35227	Alicycliphilus denitrificans K601	10485869
YP_004390606.1	CDS	Alide2_4792	NC_015423.1	35245	36927	D	PFAM: Zeta toxin; KEGG: ajs:Ajs_4239 zeta toxin family protein; Zeta toxin family protein	35245..36927	Alicycliphilus denitrificans K601	10485870
YP_004390607.1	CDS	Alide2_4793	NC_015423.1	36943	38154	D	PFAM: Protein of unknown function DUF1173; KEGG: ajs:Ajs_4238 hypothetical protein; hypothetical protein	36943..38154	Alicycliphilus denitrificans K601	10485871
YP_004390608.1	CDS	Alide2_4794	NC_015423.1	38151	38675	D	KEGG: ajs:Ajs_4237 hypothetical protein; hypothetical protein	38151..38675	Alicycliphilus denitrificans K601	10485872
YP_004390609.1	CDS	Alide2_4795	NC_015423.1	38831	39106	D	KEGG: ajs:Ajs_4236 histone family protein DNA-binding protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein	38831..39106	Alicycliphilus denitrificans K601	10485873
YP_004390610.1	CDS	Alide2_4796	NC_015423.1	39110	40165	D	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: ajs:Ajs_4235 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein	39110..40165	Alicycliphilus denitrificans K601	10485874
YP_004390611.1	CDS	Alide2_4797	NC_015423.1	40223	40993	D	KEGG: azo:azo0081 hypothetical protein; hypothetical protein	40223..40993	Alicycliphilus denitrificans K601	10485875
YP_004390612.1	CDS	Alide2_4798	NC_015423.1	41020	41781	D	KEGG: ajs:Ajs_4232 hypothetical protein; hypothetical protein	41020..41781	Alicycliphilus denitrificans K601	10485876
YP_004390613.1	CDS	Alide2_4799	NC_015423.1	41778	42179	D	PFAM: Protein of unknown function DUF1294; KEGG: dac:Daci_5254 cold-shock DNA-binding domain-containing protein; hypothetical protein	41778..42179	Alicycliphilus denitrificans K601	10485877
YP_004390614.1	CDS	Alide2_4800	NC_015423.1	42176	42703	D	KEGG: ajs:Ajs_4231 aspartyl protease-like protein; aspartyl protease-like protein	42176..42703	Alicycliphilus denitrificans K601	10485878
YP_004390615.1	CDS	Alide2_4801	NC_015423.1	42700	43347	D	KEGG: ajs:Ajs_4230 metal dependent phosphohydrolase; metal dependent phosphohydrolase	42700..43347	Alicycliphilus denitrificans K601	10485879
YP_004390616.1	CDS	Alide2_4802	NC_015423.1	44064	44336	D	KEGG: gsu:GSU2163 hypothetical protein; hypothetical protein	44064..44336	Alicycliphilus denitrificans K601	10485880
YP_004390617.1	CDS	Alide2_4803	NC_015423.1	44346	44723	D	KEGG: ajs:Ajs_4227 hypothetical protein; hypothetical protein	44346..44723	Alicycliphilus denitrificans K601	10485881
YP_004390618.1	CDS	Alide2_4804	NC_015423.1	44727	45713	D	KEGG: eba:ebA4367 DNA primase; PFAM: DNA primase, catalytic core, N-terminal; Toprim domain; DNA primase, DnaB-helicase binding domain; SMART: Toprim domain; DNA primase catalytic core domain-containing protein	44727..45713	Alicycliphilus denitrificans K601	10485882
YP_004390619.1	CDS	Alide2_4805	NC_015423.1	45869	46288	D	KEGG: ajs:Ajs_4225 hypothetical protein; hypothetical protein	45869..46288	Alicycliphilus denitrificans K601	10485883
YP_004390620.1	CDS	Alide2_4806	NC_015423.1	46317	47099	D	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ajs:Ajs_4224 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase	46317..47099	Alicycliphilus denitrificans K601	10485884
YP_004390621.1	CDS	Alide2_4807	NC_015423.1	47112	48404	D	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: ajs:Ajs_4223 ParB-like partition proteins; SMART: ParB-like nuclease; parB-like partition protein	47112..48404	Alicycliphilus denitrificans K601	10485885
YP_004390622.1	CDS	Alide2_4808	NC_015423.1	48485	48865	D	KEGG: ajs:Ajs_4222 hypothetical protein; hypothetical protein	48485..48865	Alicycliphilus denitrificans K601	10485886
YP_004390623.1	CDS	Alide2_4809	NC_015423.1	48939	49262	D	KEGG: ajs:Ajs_4221 hypothetical protein; TIGRFAM: Addiction module killer protein, HI1419; PFAM: Protein of unknown function DUF891; addiction module killer protein	48939..49262	Alicycliphilus denitrificans K601	10485887
YP_004390624.1	CDS	Alide2_4810	NC_015423.1	49259	49570	D	TIGRFAM: Addiction module antidote protein, HI1420; KEGG: vei:Veis_3350 putative transcriptional regulator; addiction module antidote protein	49259..49570	Alicycliphilus denitrificans K601	10485888
YP_004390625.1	CDS	Alide2_4811	NC_015423.1	49684	50646	D	PFAM: Replication initiator protein A; KEGG: ajs:Ajs_4219 hypothetical protein; Replication initiator protein A	49684..50646	Alicycliphilus denitrificans K601	10485889
YP_004390626.1	CDS	Alide2_4812	NC_015423.1	52151	53188	D	KEGG: ajs:Ajs_4218 hypothetical protein; hypothetical protein	52151..53188	Alicycliphilus denitrificans K601	10485890
YP_004390627.1	CDS	Alide2_4813	NC_015423.1	53185	53685	D	KEGG: ajs:Ajs_4216 hypothetical protein; hypothetical protein	53185..53685	Alicycliphilus denitrificans K601	10485891
YP_004390628.1	CDS	Alide2_4814	NC_015423.1	53896	54117	D	KEGG: ajs:Ajs_4215 hypothetical protein; hypothetical protein	53896..54117	Alicycliphilus denitrificans K601	10485892
YP_004390629.1	CDS	Alide2_4815	NC_015423.1	54121	55035	D	PFAM: C-5 cytosine methyltransferase; KEGG: ajs:Ajs_4214 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase	54121..55035	Alicycliphilus denitrificans K601	10485893
YP_004390630.1	CDS	Alide2_4816	NC_015423.1	55058	55675	D	SMART: Phospholipase D/Transphosphatidylase; KEGG: ajs:Ajs_4213 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme; phospholipase D/transphosphatidylase	55058..55675	Alicycliphilus denitrificans K601	10485894
YP_004390631.1	CDS	Alide2_4817	NC_015423.1	55816	57345	R	KEGG: dac:Daci_0165 RND efflux system outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein	complement(55816..57345)	Alicycliphilus denitrificans K601	10485895
YP_004390632.1	CDS	Alide2_4818	NC_015423.1	57410	60577	R	KEGG: kpe:KPK_1162 RND family multidrug efflux permease protein OqxB; TIGRFAM: Hydrophobe/amphiphile efflux-1 HAE1; PFAM: Acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter	complement(57410..60577)	Alicycliphilus denitrificans K601	10485896
YP_004390633.1	CDS	Alide2_4819	NC_015423.1	60597	61796	R	KEGG: xac:XAC1482 RND multidrug efflux membrane fusion protein; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit	complement(60597..61796)	Alicycliphilus denitrificans K601	10485897
YP_004390634.1	CDS	Alide2_4820	NC_015423.1	61938	62543	D	PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: smd:Smed_3783 TetR family transcriptional regulator; TetR family transcriptional regulator	61938..62543	Alicycliphilus denitrificans K601	10485898
YP_004390635.1	CDS	Alide2_4821	NC_015423.1	62613	63308	D	KEGG: ajs:Ajs_4212 hypothetical protein; hypothetical protein	62613..63308	Alicycliphilus denitrificans K601	10485899
YP_004390636.1	CDS	Alide2_4822	NC_015423.1	64078	64518	D	KEGG: ajs:Ajs_4211 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein	64078..64518	Alicycliphilus denitrificans K601	10485900
YP_004390637.1	CDS	Alide2_4823	NC_015423.1	64521	64700	D	hypothetical protein	64521..64700	Alicycliphilus denitrificans K601	10485901
YP_004390638.1	CDS	Alide2_4824	NC_015423.1	64783	65610	D	PFAM: Protein of unknown function DUF932; KEGG: ajs:Ajs_4210 hypothetical protein; hypothetical protein	64783..65610	Alicycliphilus denitrificans K601	10485902
YP_004390639.1	CDS	Alide2_4825	NC_015423.1	65680	65988	D	KEGG: ajs:Ajs_4208 hypothetical protein; hypothetical protein	65680..65988	Alicycliphilus denitrificans K601	10485903
YP_004390640.1	CDS	Alide2_4826	NC_015423.1	66096	66326	D	KEGG: ajs:Ajs_4207 hypothetical protein; hypothetical protein	66096..66326	Alicycliphilus denitrificans K601	10485904
YP_004390641.1	CDS	Alide2_4827	NC_015423.1	67366	69405	D	KEGG: ajs:Ajs_4206 methyltransferase type 11; manually curated; PFAM: Methyltransferase type 11; type 11 methyltransferase	67366..69405	Alicycliphilus denitrificans K601	10485905
YP_004390642.1	CDS	Alide2_4828	NC_015423.1	69459	69926	D	KEGG: ajs:Ajs_4205 hypothetical protein; hypothetical protein	69459..69926	Alicycliphilus denitrificans K601	10485906
YP_004390643.1	CDS	Alide2_4829	NC_015423.1	69940	70389	D	KEGG: ajs:Ajs_4204 hypothetical protein; hypothetical protein	69940..70389	Alicycliphilus denitrificans K601	10485907
YP_004390644.1	CDS	Alide2_4830	NC_015423.1	70433	70651	D	KEGG: ajs:Ajs_4203 hypothetical protein; hypothetical protein	70433..70651	Alicycliphilus denitrificans K601	10485908
YP_004390645.1	CDS	Alide2_4831	NC_015423.1	71211	71705	D	KEGG: ajs:Ajs_4202 DNA repair protein RadC; TIGRFAM: Uncharacterised protein family UPF0758; PFAM: Uncharacterised protein family UPF0758; DNA repair protein RadC	71211..71705	Alicycliphilus denitrificans K601	10485909
YP_004390646.1	CDS	Alide2_4832	NC_015423.1	71878	72207	D	KEGG: ajs:Ajs_4201 hypothetical protein; hypothetical protein	71878..72207	Alicycliphilus denitrificans K601	10485910
YP_004390647.1	CDS	Alide2_4833	NC_015423.1	72222	72548	D	KEGG: ajs:Ajs_4200 hypothetical protein; hypothetical protein	72222..72548	Alicycliphilus denitrificans K601	10485911
YP_004390648.1	CDS	Alide2_4834	NC_015423.1	72561	72797	D	KEGG: ajs:Ajs_4199 hypothetical protein; hypothetical protein	72561..72797	Alicycliphilus denitrificans K601	10485912
YP_004390649.1	CDS	Alide2_4835	NC_015423.1	72805	73422	D	KEGG: ajs:Ajs_4198 resolvase domain-containing protein; PFAM: Resolvase, N-terminal; SMART: Resolvase, N-terminal; resolvase domain-containing protein	72805..73422	Alicycliphilus denitrificans K601	10485913
YP_004390650.1	CDS	Alide2_4836	NC_015423.1	74058	74279	R	KEGG: ajs:Ajs_4197 hypothetical protein; hypothetical protein	complement(74058..74279)	Alicycliphilus denitrificans K601	10485914
YP_004390651.1	CDS	Alide2_4837	NC_015423.1	74285	74875	R	hypothetical protein	complement(74285..74875)	Alicycliphilus denitrificans K601	10485915
YP_004390652.1	CDS	Alide2_4838	NC_015423.1	74872	75192	R	KEGG: ajs:Ajs_4196 hypothetical protein; hypothetical protein	complement(74872..75192)	Alicycliphilus denitrificans K601	10485916
Alide2_R0001	tRNA	Alide2_R0001	NC_015422.1	420292	420367	D	tRNA-Arg	420292..420367	Alicycliphilus denitrificans K601	10481418
Alide2_R0002	tRNA	Alide2_R0002	NC_015422.1	420516	420601	D	tRNA-Tyr	420516..420601	Alicycliphilus denitrificans K601	10481419
Alide2_R0003	tRNA	Alide2_R0003	NC_015422.1	420650	420723	D	tRNA-Gly	420650..420723	Alicycliphilus denitrificans K601	10481420
Alide2_R0004	tRNA	Alide2_R0004	NC_015422.1	420764	420838	D	tRNA-Thr	420764..420838	Alicycliphilus denitrificans K601	10481421
Alide2_R0005	tRNA	Alide2_R0005	NC_015422.1	422117	422192	D	tRNA-Trp	422117..422192	Alicycliphilus denitrificans K601	10481423
Alide2_R0006	tRNA	Alide2_R0006	NC_015422.1	440092	440167	D	tRNA-Phe	440092..440167	Alicycliphilus denitrificans K601	10481437
Alide2_R0007	tRNA	Alide2_R0007	NC_015422.1	904642	904717	D	tRNA-Thr	904642..904717	Alicycliphilus denitrificans K601	10481884
Alide2_R0008	tRNA	Alide2_R0008	NC_015422.1	928037	928113	R	tRNA-Pro	complement(928037..928113)	Alicycliphilus denitrificans K601	10481909
Alide2_R0009	tRNA	Alide2_R0009	NC_015422.1	988675	988751	R	tRNA-Gln	complement(988675..988751)	Alicycliphilus denitrificans K601	10481968
Alide2_R0010	tRNA	Alide2_R0010	NC_015422.1	1000521	1000597	D	tRNA-Met	1000521..1000597	Alicycliphilus denitrificans K601	10481979
Alide2_R0011	tRNA	Alide2_R0011	NC_015422.1	1122490	1122574	D	tRNA-Ser	1122490..1122574	Alicycliphilus denitrificans K601	10482101
Alide2_R0012	tRNA	Alide2_R0012	NC_015422.1	1134494	1134583	D	tRNA-Ser	1134494..1134583	Alicycliphilus denitrificans K601	10482114
Alide2_R0014	tRNA	Alide2_R0014	NC_015422.1	1225217	1225306	R	tRNA-Ser	complement(1225217..1225306)	Alicycliphilus denitrificans K601	10482200
Alide2_R0016	tRNA	Alide2_R0016	NC_015422.1	1502128	1502204	D	tRNA-Ile	1502128..1502204	Alicycliphilus denitrificans K601	10482453
Alide2_R0017	tRNA	Alide2_R0017	NC_015422.1	1502235	1502310	D	tRNA-Ala	1502235..1502310	Alicycliphilus denitrificans K601	10482454
Alide2_R0020	tRNA	Alide2_R0020	NC_015422.1	1546785	1546871	D	tRNA-Leu	1546785..1546871	Alicycliphilus denitrificans K601	10482491
Alide2_R0021	tRNA	Alide2_R0021	NC_015422.1	1552987	1553062	D	tRNA-Gly	1552987..1553062	Alicycliphilus denitrificans K601	10482496
Alide2_R0022	tRNA	Alide2_R0022	NC_015422.1	1553120	1553193	D	tRNA-Cys	1553120..1553193	Alicycliphilus denitrificans K601	10482497
Alide2_R0023	tRNA	Alide2_R0023	NC_015422.1	1645555	1645630	D	tRNA-Gly	1645555..1645630	Alicycliphilus denitrificans K601	10482587
Alide2_R0024	tRNA	Alide2_R0024	NC_015422.1	1713545	1713620	D	tRNA-Val	1713545..1713620	Alicycliphilus denitrificans K601	10482660
Alide2_R0025	tRNA	Alide2_R0025	NC_015422.1	1727592	1727676	R	tRNA-Leu	complement(1727592..1727676)	Alicycliphilus denitrificans K601	10482672
Alide2_R0026	tRNA	Alide2_R0026	NC_015422.1	2066808	2066881	R	tRNA-Gly	complement(2066808..2066881)	Alicycliphilus denitrificans K601	10483006
Alide2_R0027	tRNA	Alide2_R0027	NC_015422.1	2071264	2071340	D	tRNA-Pro	2071264..2071340	Alicycliphilus denitrificans K601	10483012
Alide2_R0029	tRNA	Alide2_R0029	NC_015422.1	2231627	2231711	R	tRNA-Leu	complement(2231627..2231711)	Alicycliphilus denitrificans K601	10483173
Alide2_R0030	tRNA	Alide2_R0030	NC_015422.1	2231888	2231972	R	tRNA-Leu	complement(2231888..2231972)	Alicycliphilus denitrificans K601	10483174
Alide2_R0031	tRNA	Alide2_R0031	NC_015422.1	2317441	2317516	D	tRNA-Ala	2317441..2317516	Alicycliphilus denitrificans K601	10483263
Alide2_R0032	tRNA	Alide2_R0032	NC_015422.1	2416746	2416838	D	tRNA-Ser	2416746..2416838	Alicycliphilus denitrificans K601	10483360
Alide2_R0033	tRNA	Alide2_R0033	NC_015422.1	2504108	2504182	D	tRNA-Val	2504108..2504182	Alicycliphilus denitrificans K601	10483449
Alide2_R0034	tRNA	Alide2_R0034	NC_015422.1	2504217	2504291	D	tRNA-Val	2504217..2504291	Alicycliphilus denitrificans K601	10483450
Alide2_R0036	tRNA	Alide2_R0036	NC_015422.1	2952152	2952228	R	tRNA-Pro	complement(2952152..2952228)	Alicycliphilus denitrificans K601	10483870
Alide2_R0037	tRNA	Alide2_R0037	NC_015422.1	3066554	3066629	D	tRNA-Asn	3066554..3066629	Alicycliphilus denitrificans K601	10483982
Alide2_R0038	tRNA	Alide2_R0038	NC_015422.1	3066682	3066757	D	tRNA-Asn	3066682..3066757	Alicycliphilus denitrificans K601	10483983
Alide2_R0039	tRNA	Alide2_R0039	NC_015422.1	3188650	3188740	D	tRNA-Ser	3188650..3188740	Alicycliphilus denitrificans K601	10484098
Alide2_R0040	tRNA	Alide2_R0040	NC_015422.1	3314746	3314821	R	tRNA-Lys	complement(3314746..3314821)	Alicycliphilus denitrificans K601	10484230
Alide2_R0041	tRNA	Alide2_R0041	NC_015422.1	3378201	3378276	R	tRNA-His	complement(3378201..3378276)	Alicycliphilus denitrificans K601	10484291
Alide2_R0042	tRNA	Alide2_R0042	NC_015422.1	3420810	3420886	R	tRNA-Asp	complement(3420810..3420886)	Alicycliphilus denitrificans K601	10484332
Alide2_R0043	tRNA	Alide2_R0043	NC_015422.1	3420934	3421009	R	tRNA-Glu	complement(3420934..3421009)	Alicycliphilus denitrificans K601	10484333
Alide2_R0044	tRNA	Alide2_R0044	NC_015422.1	3421033	3421108	R	tRNA-Ala	complement(3421033..3421108)	Alicycliphilus denitrificans K601	10484334
Alide2_R0045	tRNA	Alide2_R0045	NC_015422.1	3549674	3549750	R	tRNA-Asp	complement(3549674..3549750)	Alicycliphilus denitrificans K601	10484467
Alide2_R0046	tRNA	Alide2_R0046	NC_015422.1	3549798	3549873	R	tRNA-Glu	complement(3549798..3549873)	Alicycliphilus denitrificans K601	10484468
Alide2_R0047	tRNA	Alide2_R0047	NC_015422.1	3549894	3549969	R	tRNA-Ala	complement(3549894..3549969)	Alicycliphilus denitrificans K601	10484469
Alide2_R0048	tRNA	Alide2_R0048	NC_015422.1	3586712	3586787	D	tRNA-Thr	3586712..3586787	Alicycliphilus denitrificans K601	10484502
Alide2_R0049	tRNA	Alide2_R0049	NC_015422.1	3632868	3632944	D	tRNA-Arg	3632868..3632944	Alicycliphilus denitrificans K601	10484549
Alide2_R0050	tRNA	Alide2_R0050	NC_015422.1	3752446	3752522	R	tRNA-Val	complement(3752446..3752522)	Alicycliphilus denitrificans K601	10484674
Alide2_R0051	tRNA	Alide2_R0051	NC_015422.1	3792373	3792448	D	tRNA-Lys	3792373..3792448	Alicycliphilus denitrificans K601	10484707
Alide2_R0052	tRNA	Alide2_R0052	NC_015422.1	4001418	4001494	R	tRNA-Met	complement(4001418..4001494)	Alicycliphilus denitrificans K601	10484908
Alide2_R0053	tRNA	Alide2_R0053	NC_015422.1	4074769	4074843	R	tRNA-Arg	complement(4074769..4074843)	Alicycliphilus denitrificans K601	10484975
Alide2_R0054	tRNA	Alide2_R0054	NC_015422.1	4171785	4171861	R	tRNA-Arg	complement(4171785..4171861)	Alicycliphilus denitrificans K601	10485068
Alide2_R0055	tRNA	Alide2_R0055	NC_015422.1	4177598	4177682	D	tRNA-Leu	4177598..4177682	Alicycliphilus denitrificans K601	10485075
Alide2_R0059	tRNA	Alide2_R0059	NC_015422.1	4370290	4370365	R	tRNA-Ala	complement(4370290..4370365)	Alicycliphilus denitrificans K601	10485250
Alide2_R0060	tRNA	Alide2_R0060	NC_015422.1	4370396	4370472	R	tRNA-Ile	complement(4370396..4370472)	Alicycliphilus denitrificans K601	10485251
Alide2_R0062	tRNA	Alide2_R0062	NC_015422.1	4554837	4554913	R	tRNA-Met	complement(4554837..4554913)	Alicycliphilus denitrificans K601	10485422
Alide2_R0065	tRNA	Alide2_R0065	NC_015422.1	4661520	4661595	R	tRNA-Ala	complement(4661520..4661595)	Alicycliphilus denitrificans K601	10485525
Alide2_R0066	tRNA	Alide2_R0066	NC_015422.1	4661626	4661702	R	tRNA-Ile	complement(4661626..4661702)	Alicycliphilus denitrificans K601	10485526
Alide2_R0015	rRNA	Alide2_R0015	NC_015422.1	1500507	1502023	D	16S ribosomal RNA	1500507..1502023	Alicycliphilus denitrificans K601	10482452
Alide2_R0018	rRNA	Alide2_R0018	NC_015422.1	1502672	1505548	D	23S ribosomal RNA	1502672..1505548	Alicycliphilus denitrificans K601	10482455
Alide2_R0019	rRNA	Alide2_R0019	NC_015422.1	1505665	1505777	D	5S ribosomal RNA	1505665..1505777	Alicycliphilus denitrificans K601	10482456
Alide2_R0057	rRNA	Alide2_R0057	NC_015422.1	4366822	4366934	R	5S ribosomal RNA	complement(4366822..4366934)	Alicycliphilus denitrificans K601	10485248
Alide2_R0058	rRNA	Alide2_R0058	NC_015422.1	4367051	4369928	R	23S ribosomal RNA	complement(4367051..4369928)	Alicycliphilus denitrificans K601	10485249
Alide2_R0061	rRNA	Alide2_R0061	NC_015422.1	4370577	4372093	R	16S ribosomal RNA	complement(4370577..4372093)	Alicycliphilus denitrificans K601	10485252
Alide2_R0063	rRNA	Alide2_R0063	NC_015422.1	4658053	4658165	R	5S ribosomal RNA	complement(4658053..4658165)	Alicycliphilus denitrificans K601	10485523
Alide2_R0064	rRNA	Alide2_R0064	NC_015422.1	4658282	4661158	R	23S ribosomal RNA	complement(4658282..4661158)	Alicycliphilus denitrificans K601	10485524
Alide2_R0067	rRNA	Alide2_R0067	NC_015422.1	4661807	4663323	R	16S ribosomal RNA	complement(4661807..4663323)	Alicycliphilus denitrificans K601	10485527