-- dump date   	20120504_133334
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_945834.1	identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362
YP_945835.1	identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663
YP_945836.2	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_945837.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_945838.1	identified by match to protein family HMM PF05258
YP_945839.1	negatively supercoils closed circular double-stranded DNA
YP_945840.1	negatively supercoils closed circular double-stranded DNA
YP_945843.1	identified by match to protein family HMM PF00892
YP_945844.1	identified by match to protein family HMM PF00535
YP_945846.1	identified by match to protein family HMM PF00160
YP_945847.1	identified by match to protein family HMM PF01694
YP_945850.1	identified by match to protein family HMM PF03352
YP_945851.1	identified by similarity to SP:P05050; match to protein family HMM PF03171
YP_945852.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_945853.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_945854.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_945855.1	identified by match to protein family HMM PF06781
YP_945856.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_945858.1	identified by match to protein family HMM PF00117; match to protein family HMM TIGR00566
YP_945859.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793
YP_945860.1	identified by match to protein family HMM PF00069
YP_945861.1	identified by match to protein family HMM PF00905
YP_945862.1	identified by match to protein family HMM PF01098
YP_945863.1	identified by match to protein family HMM PF00481
YP_945864.1	identified by match to protein family HMM PF00498
YP_945865.1	identified by match to protein family HMM PF00498
YP_945866.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_945867.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_945868.1	identified by similarity to GB:CAB66283.1
YP_945869.1	identified by match to protein family HMM PF01453
YP_945870.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_945872.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02909
YP_945873.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_945874.1	identified by match to protein family HMM PF00582
YP_945875.1	identified by match to protein family HMM PF00324
YP_945877.1	identified by match to protein family HMM PF00903
YP_945879.1	identified by match to protein family HMM PF03466
YP_945880.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_945881.1	identified by match to protein family HMM PF03746
YP_945882.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_945883.1	identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724
YP_945884.1	Includes: Biotincarboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP); identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_945885.1	identified by match to protein family HMM PF00941; match to protein family HMM PF01565
YP_945886.1	identified by match to protein family HMM PF00532
YP_945887.1	identified by match to protein family HMM PF01758
YP_945888.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740
YP_945891.1	identified by match to protein family HMM PF00294
YP_945893.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_945895.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02558
YP_945897.1	identified by match to protein family HMM PF03009
YP_945898.1	identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837
YP_945899.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_945900.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_945908.1	identified by match to protein family HMM PF07690
YP_945909.1	identified by match to protein family HMM PF01022
YP_945910.1	identified by match to protein family HMM PF01872
YP_945911.1	identified by match to protein family HMM PF01839
YP_945912.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_945913.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_945914.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_945915.1	identified by match to protein family HMM PF00232
YP_945916.1	identified by match to protein family HMM PF00528
YP_945917.1	identified by match to protein family HMM PF00528
YP_945918.1	identified by match to protein family HMM PF01547
YP_945919.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01183
YP_945920.1	identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00801
YP_945921.1	identified by match to protein family HMM PF01757
YP_945922.1	identified by match to protein family HMM PF00881
YP_945924.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_945925.1	identified by match to protein family HMM PF00106
YP_945927.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_945928.1	identified by match to protein family HMM PF03575
YP_945929.1	identified by match to protein family HMM PF00581
YP_945930.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01842
YP_945931.1	identified by match to protein family HMM PF00781
YP_945932.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_945934.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_945937.1	identified by match to protein family HMM PF03861
YP_945938.1	identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_945939.1	identified by match to protein family HMM PF01075
YP_945940.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_945941.1	identified by match to protein family HMM PF01075
YP_945943.1	identified by match to protein family HMM PF00534
YP_945944.1	identified by match to protein family HMM PF01380; match to protein family HMM TIGR00441
YP_945945.1	identified by similarity to SP:P76658; match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_945946.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_945947.1	identified by match to protein family HMM PF01075
YP_945948.1	identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_945949.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_945952.1	identified by match to protein family HMM PF07332
YP_945959.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_945961.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432
YP_945962.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_945966.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_945967.1	identified by match to protein family HMM PF01227; match to protein family HMM TIGR00063
YP_945968.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_945969.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_945970.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_945972.1	identified by match to protein family HMM PF03703
YP_945973.1	identified by match to protein family HMM PF03703
YP_945974.1	identified by match to protein family HMM PF03807
YP_945975.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_945976.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_945979.1	identified by match to protein family HMM PF00730
YP_945980.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_945981.1	identified by match to protein family HMM PF01663
YP_945982.1	identified by match to protein family HMM PF00892
YP_945983.1	identified by match to protein family HMM PF00561
YP_945986.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_945989.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_945990.1	identified by match to protein family HMM PF03033
YP_945991.1	identified by match to protein family HMM PF00326
YP_945992.1	catalyzes the conversion of l-glutamate to a-N-acetyl-l-glutamate in arginine biosynthesis
YP_945993.1	identified by match to protein family HMM PF01565
YP_945995.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_945996.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365
YP_945997.1	identified by match to protein family HMM PF00381; match to protein family HMM PF03610; match to protein family HMM TIGR01003; match to protein family HMM TIGR02364
YP_945998.1	identified by match to protein family HMM PF05532
YP_946000.1	identified by match to protein family HMM PF00903
YP_946001.1	identified by match to protein family HMM PF00903
YP_946002.1	identified by match to protein family HMM PF00165
YP_946005.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730
YP_946007.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_946008.1	identified by match to protein family HMM PF01425; match to protein family HMM TIGR02713
YP_946009.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00724; match to protein family HMM TIGR02712
YP_946012.1	identified by match to protein family HMM PF00324
YP_946013.1	identified by match to protein family HMM PF00440
YP_946015.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_946017.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_946018.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_946019.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_946020.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_946021.1	identified by match to protein family HMM PF01384
YP_946025.1	identified by match to protein family HMM PF06964
YP_946028.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_946029.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_946031.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_946032.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946033.1	identified by match to protein family HMM PF01168
YP_946034.1	identified by match to protein family HMM PF01613
YP_946035.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_946036.1	identified by match to protein family HMM PF00699; match to protein family HMM TIGR00192
YP_946037.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_946038.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_946039.1	identified by match to protein family HMM PF01730
YP_946040.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_946041.1	identified by similarity to SP:Q07400; match to protein family HMM PF01774
YP_946042.1	identified by match to protein family HMM PF03824
YP_946043.1	identified by match to protein family HMM PF00144
YP_946044.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_946045.1	identified by match to protein family HMM PF00128
YP_946049.1	identified by match to protein family HMM PF00248
YP_946050.1	identified by match to protein family HMM PF01370
YP_946051.1	identified by match to protein family HMM PF00248
YP_946052.1	identified by match to protein family HMM PF00248
YP_946054.1	identified by match to protein family HMM PF07311
YP_946055.1	identified by match to protein family HMM PF00106
YP_946056.1	identified by match to protein family HMM PF00582
YP_946057.1	identified by match to protein family HMM PF00544
YP_946058.1	identified by match to protein family HMM PF00544; match to protein family HMM PF01095
YP_946059.1	identified by match to protein family HMM PF00528
YP_946060.1	identified by match to protein family HMM PF00528
YP_946062.1	identified by match to protein family HMM PF04616
YP_946063.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946064.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_946065.1	identified by match to protein family HMM PF04199
YP_946066.1	identified by match to protein family HMM PF01266
YP_946067.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01613
YP_946069.1	identified by match to protein family HMM PF00106
YP_946071.1	identified by match to protein family HMM PF00165
YP_946072.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946073.1	identified by match to protein family HMM PF00561
YP_946075.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03721
YP_946076.1	member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function
YP_946077.1	identified by match to protein family HMM PF01116
YP_946078.1	identified by match to protein family HMM PF06993
YP_946079.1	identified by match to protein family HMM PF00903
YP_946080.1	identified by match to protein family HMM PF01757
YP_946083.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_946086.1	identified by match to protein family HMM PF00282
YP_946089.1	identified by match to protein family HMM PF04183
YP_946091.1	identified by match to protein family HMM PF00106
YP_946095.1	identified by match to protein family HMM PF00583
YP_946097.1	identified by match to protein family HMM PF04299
YP_946098.1	identified by match to protein family HMM PF00892
YP_946099.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_946100.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946101.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_946103.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity
YP_946104.1	identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772
YP_946109.1	identified by match to protein family HMM PF00210
YP_946112.1	identified by match to protein family HMM PF00440
YP_946113.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_946114.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_946115.1	identified by match to protein family HMM PF00294
YP_946116.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_946119.1	identified by match to protein family HMM PF03861
YP_946120.1	ATP-dependent carboxylate-amine ligase
YP_946121.1	identified by match to protein family HMM PF00903
YP_946122.1	identified by match to protein family HMM PF00165
YP_946123.1	identified by match to protein family HMM PF02230
YP_946124.1	identified by match to protein family HMM PF00532
YP_946125.1	identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636
YP_946127.1	identified by match to protein family HMM PF01047
YP_946133.1	identified by match to protein family HMM PF01047
YP_946134.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_946135.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734
YP_946136.1	identified by match to protein family HMM PF00494
YP_946137.1	identified by match to protein family HMM PF00348
YP_946138.1	catalyzes the rearrangement of isopentenyl diphosphate to dimethylallyl phosphate
YP_946139.1	identified by match to protein family HMM PF01047
YP_946140.1	identified by match to protein family HMM PF02517
YP_946141.1	identified by match to protein family HMM PF00563
YP_946145.1	identified by match to protein family HMM PF00657
YP_946146.1	in Corynebacterium glutamicum this enzyme catalyzes the conversion of maleylpyruvate into fumarylpyruvate in a glutathione-independent gentisate pathway; dependent on mycothiol
YP_946147.1	identified by match to protein family HMM PF01557
YP_946148.1	identified by match to protein family HMM PF07883
YP_946149.1	identified by match to protein family HMM PF01614
YP_946150.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946151.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486
YP_946152.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946153.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946154.1	identified by match to protein family HMM PF00795
YP_946156.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_946157.1	identified by match to protein family HMM PF00248
YP_946159.1	identified by match to protein family HMM PF00107
YP_946160.1	identified by match to protein family HMM PF00795
YP_946162.1	identified by match to protein family HMM PF02653
YP_946163.1	identified by match to protein family HMM PF00005
YP_946165.1	identified by match to protein family HMM PF00294
YP_946166.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_946167.1	identified by match to protein family HMM PF00370
YP_946168.1	identified by match to protein family HMM PF01116
YP_946169.1	identified by match to protein family HMM PF01263
YP_946170.1	identified by match to protein family HMM PF01381
YP_946171.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_946172.1	catalyzes the formation of acetate from pyruvate
YP_946173.1	identified by match to protein family HMM PF03861
YP_946175.1	identified by match to protein family HMM PF03724
YP_946176.1	catalyzes the formation of glutamate from glutamine
YP_946178.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_946180.1	identified by match to protein family HMM PF03746
YP_946181.1	identified by match to protein family HMM PF02626
YP_946182.1	identified by match to protein family HMM PF00753
YP_946183.1	identified by match to protein family HMM PF00903
YP_946184.1	identified by match to protein family HMM PF04286
YP_946185.1	identified by match to protein family HMM PF03009
YP_946187.1	identified by match to protein family HMM PF03591
YP_946188.1	identified by match to protein family HMM PF05437
YP_946189.1	identified by match to protein family HMM PF01910
YP_946190.1	identified by match to protein family HMM PF01596
YP_946191.1	identified by match to protein family HMM PF00583
YP_946193.1	identified by match to protein family HMM PF08007
YP_946194.1	identified by match to protein family HMM PF06999
YP_946197.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_946198.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_946199.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_946200.1	identified by match to protein family HMM PF01032
YP_946201.1	identified by match to protein family HMM PF01032
YP_946202.1	identified by match to protein family HMM PF00005
YP_946203.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946204.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946205.1	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01963
YP_946207.1	identified by match to protein family HMM PF00324
YP_946208.1	identified by match to protein family HMM PF03752
YP_946209.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01614
YP_946211.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_946212.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_946216.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_946217.1	identified by match to protein family HMM PF00860
YP_946218.1	identified by match to protein family HMM PF04234
YP_946221.1	identified by match to protein family HMM PF00582
YP_946222.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01326
YP_946223.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_946224.1	identified by match to protein family HMM PF06262
YP_946225.1	identified by match to protein family HMM PF00294
YP_946226.1	identified by match to protein family HMM PF00892
YP_946228.1	identified by match to protein family HMM PF00239
YP_946229.1	identified by match to protein family HMM PF01230
YP_946235.1	identified by match to protein family HMM PF07512
YP_946243.1	identified by match to protein family HMM PF02518
YP_946245.1	identified by match to protein family HMM PF00440
YP_946246.1	identified by match to protein family HMM PF07080
YP_946247.1	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_946248.1	identified by match to protein family HMM PF01380
YP_946249.1	identified by match to protein family HMM PF00294
YP_946250.1	identified by match to protein family HMM PF00532
YP_946251.1	identified by match to protein family HMM PF01547
YP_946252.1	identified by match to protein family HMM PF00528
YP_946253.1	identified by match to protein family HMM PF00528
YP_946256.1	identified by match to protein family HMM PF03780
YP_946263.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_946266.1	identified by match to protein family HMM PF01381
YP_946267.1	identified by match to protein family HMM PF01547
YP_946268.1	identified by match to protein family HMM PF00528
YP_946269.1	identified by match to protein family HMM PF00528
YP_946270.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946272.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_946274.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_946275.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_946276.1	identified by match to protein family HMM PF03928
YP_946277.1	identified by match to protein family HMM PF00023
YP_946278.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_946279.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_946280.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_946281.1	identified by match to protein family HMM PF01614
YP_946282.1	identified by match to protein family HMM PF00583
YP_946283.1	identified by match to protein family HMM PF02469
YP_946285.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_946286.1	identified by match to protein family HMM PF01614
YP_946287.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454
YP_946288.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02819
YP_946289.1	identified by match to protein family HMM PF00384; match to protein family HMM TIGR01701
YP_946290.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_946291.1	identified by match to protein family HMM PF04961
YP_946292.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01571
YP_946293.1	identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655
YP_946294.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946295.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_946297.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946298.1	identified by match to protein family HMM PF00355
YP_946299.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_946300.1	identified by match to protein family HMM PF00196
YP_946301.1	identified by match to protein family HMM PF01380
YP_946302.1	identified by match to protein family HMM PF00215
YP_946305.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_946307.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_946308.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_946309.1	identified by match to protein family HMM PF03446; match to protein family HMM TIGR01692
YP_946310.1	identified by match to protein family HMM PF00378
YP_946313.1	identified by match to protein family HMM PF03070
YP_946314.1	identified by match to protein family HMM PF00582
YP_946315.1	identified by match to protein family HMM PF01844
YP_946316.1	identified by match to protein family HMM PF01047
YP_946317.1	identified by match to protein family HMM PF00501
YP_946318.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_946319.1	identified by match to protein family HMM PF00324
YP_946320.1	identified by similarity to GB:AAS99880.1; match to protein family HMM PF00732; match to protein family HMM PF05199
YP_946321.1	identified by match to protein family HMM PF00171
YP_946323.1	identified by match to protein family HMM PF00174; match to protein family HMM PF03404
YP_946324.1	identified by match to protein family HMM PF00440
YP_946325.1	identified by match to protein family HMM PF00376; match to protein family HMM PF07739
YP_946326.1	identified by match to protein family HMM PF03551
YP_946327.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_946328.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946329.1	identified by match to protein family HMM PF01547
YP_946330.1	identified by match to protein family HMM PF00528
YP_946331.1	identified by match to protein family HMM PF00528
YP_946332.1	identified by match to protein family HMM PF01261
YP_946333.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_946335.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_946336.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_946337.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_946338.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_946339.1	identified by match to protein family HMM PF00532
YP_946340.1	identified by match to protein family HMM PF00005
YP_946341.1	identified by match to protein family HMM PF02653
YP_946342.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946343.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_946344.1	identified by match to protein family HMM TIGR01409
YP_946345.1	identified by match to protein family HMM PF00005
YP_946352.1	identified by match to protein family HMM PF02441
YP_946356.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_946357.1	identified by match to protein family HMM PF07730
YP_946359.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460
YP_946361.1	identified by match to protein family HMM PF00588
YP_946363.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_946365.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02463
YP_946366.1	identified by match to protein family HMM PF01032
YP_946367.1	identified by match to protein family HMM PF01032
YP_946368.1	identified by match to protein family HMM PF01497
YP_946370.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_946372.1	identified by match to protein family HMM PF07690
YP_946373.1	identified by match to protein family HMM PF03758
YP_946375.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF02910; match to protein family HMM PF07992
YP_946376.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946377.1	catalyzes the oxidation of malate to oxaloacetate
YP_946378.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_946379.1	identified by match to protein family HMM PF00206
YP_946380.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_946381.1	identified by match to protein family HMM PF06267
YP_946382.1	identified by match to protein family HMM PF01042
YP_946383.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946384.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946385.1	catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine
YP_946387.1	identified by match to protein family HMM PF00171
YP_946388.1	identified by match to protein family HMM PF00324
YP_946389.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR01409
YP_946390.1	identified by similarity to GB:AAB84315.1; match to protein family HMM PF00561
YP_946391.1	identified by match to protein family HMM PF00440
YP_946392.1	identified by match to protein family HMM PF00999
YP_946396.1	identified by match to protein family HMM PF02517
YP_946397.1	identified by match to protein family HMM PF02811; match to protein family HMM TIGR01409
YP_946398.1	identified by match to protein family HMM PF00532
YP_946399.1	identified by match to protein family HMM PF00497
YP_946400.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_946401.1	identified by match to protein family HMM PF00005
YP_946402.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_946403.1	identified by match to protein family HMM PF01266
YP_946407.1	identified by match to protein family HMM PF01594
YP_946408.1	identified by match to protein family HMM PF03435
YP_946409.1	identified by match to protein family HMM PF00440
YP_946411.1	identified by match to protein family HMM PF01844
YP_946412.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_946414.1	identified by match to protein family HMM PF02629
YP_946415.1	identified by match to protein family HMM PF01522
YP_946416.1	identified by match to protein family HMM PF04237
YP_946418.1	identified by match to protein family HMM PF01547
YP_946419.1	identified by match to protein family HMM PF00528
YP_946420.1	identified by match to protein family HMM PF00528
YP_946421.1	identified by match to protein family HMM PF03992
YP_946422.1	identified by match to protein family HMM PF01613
YP_946424.1	identified by match to protein family HMM PF03241
YP_946426.1	identified by match to protein family HMM PF00795
YP_946427.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946428.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946429.1	identified by match to protein family HMM PF04456
YP_946432.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_946434.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_946435.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_946436.1	identified by match to protein family HMM TIGR01737
YP_946437.1	identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302
YP_946440.1	identified by match to protein family HMM PF05067
YP_946441.1	identified by match to protein family HMM PF02826
YP_946442.1	identified by match to protein family HMM PF02012; match to protein family HMM TIGR01451
YP_946443.1	identified by match to protein family HMM PF00082; match to protein family HMM PF02225
YP_946447.1	identified by match to protein family HMM PF01047
YP_946449.1	identified by match to protein family HMM PF00528
YP_946450.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186
YP_946451.1	identified by match to protein family HMM PF00528
YP_946452.1	identified by match to protein family HMM PF04069
YP_946454.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_946455.1	identified by match to protein family HMM PF00171
YP_946456.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_946457.1	identified by match to protein family HMM PF00465
YP_946458.1	identified by match to protein family HMM PF00171
YP_946459.1	identified by match to protein family HMM PF00106
YP_946463.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_946464.1	identified by match to protein family HMM PF07690
YP_946465.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_946466.1	identified by match to protein family HMM PF04248
YP_946468.1	identified by match to protein family HMM PF01872
YP_946469.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_946470.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_946472.1	identified by match to protein family HMM PF01757
YP_946473.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946474.1	identified by match to protein family HMM PF00171; match to protein family HMM PF01619
YP_946476.1	identified by match to protein family HMM PF07690
YP_946477.1	identified by match to protein family HMM PF01047
YP_946478.1	identified by match to protein family HMM PF01551
YP_946479.1	identified by match to protein family HMM PF00255
YP_946480.1	identified by match to protein family HMM PF00149
YP_946486.1	identified by match to protein family HMM PF00440
YP_946487.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946488.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409
YP_946489.1	identified by match to protein family HMM PF00528
YP_946490.1	identified by match to protein family HMM PF00528
YP_946491.1	identified by match to protein family HMM PF06964
YP_946492.1	identified by match to protein family HMM PF01323
YP_946493.1	identified by match to protein family HMM PF00534
YP_946494.1	identified by match to protein family HMM PF06202
YP_946495.1	identified by match to protein family HMM PF00583
YP_946496.1	identified by match to protein family HMM PF00251
YP_946497.1	identified by match to protein family HMM PF00294
YP_946498.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946500.1	identified by match to protein family HMM PF00528
YP_946501.1	identified by match to protein family HMM PF00528
YP_946502.1	identified by match to protein family HMM PF01547
YP_946503.1	identified by match to protein family HMM PF00582
YP_946504.1	identified by match to protein family HMM PF01970
YP_946506.1	identified by match to protein family HMM PF03401
YP_946507.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518
YP_946508.1	identified by match to protein family HMM PF00072
YP_946509.1	identified by match to protein family HMM PF05016; match to protein family HMM TIGR02385
YP_946510.1	identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552
YP_946511.1	identified by match to protein family HMM PF00296
YP_946512.1	identified by match to protein family HMM PF01381
YP_946513.1	identified by match to protein family HMM PF07804; match to protein family HMM PF07805
YP_946514.1	identified by match to protein family HMM PF03928
YP_946515.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_946517.1	identified by match to protein family HMM PF01261; match to protein family HMM PF07582
YP_946518.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_946519.1	identified by match to protein family HMM PF01408
YP_946520.1	identified by match to protein family HMM PF01261
YP_946521.1	identified by match to protein family HMM PF00480
YP_946522.1	identified by match to protein family HMM PF07690
YP_946523.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_946524.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_946525.1	identified by match to protein family HMM PF01381; match to protein family HMM PF06114
YP_946526.1	identified by match to protein family HMM PF00079
YP_946528.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_946529.1	identified by match to protein family HMM TIGR02122
YP_946530.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_946531.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_946532.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946534.1	identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777
YP_946535.1	identified by match to protein family HMM PF00440
YP_946536.1	identified by match to protein family HMM PF02592; match to protein family HMM TIGR00697
YP_946537.1	identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449
YP_946541.1	identified by match to protein family HMM PF03737
YP_946542.1	identified by match to protein family HMM PF01042
YP_946543.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946545.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946546.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_946547.1	identified by match to protein family HMM PF00171
YP_946548.1	identified by match to protein family HMM PF07969
YP_946549.1	identified by match to protein family HMM PF01546; match to protein family HMM TIGR01879
YP_946552.1	identified by match to protein family HMM PF00005
YP_946553.1	identified by match to protein family HMM PF00528
YP_946554.1	identified by match to protein family HMM PF01547
YP_946556.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_946557.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_946558.1	identified by match to protein family HMM PF07920
YP_946560.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_946561.1	identified by match to protein family HMM PF02585
YP_946562.1	identified by match to protein family HMM PF02222; match to protein family HMM PF02655
YP_946563.1	identified by match to protein family HMM PF00535
YP_946565.1	identified by match to protein family HMM PF00311
YP_946568.1	identified by match to protein family HMM PF01661
YP_946570.1	identified by match to protein family HMM PF00849
YP_946571.1	identified by match to protein family HMM PF01022
YP_946574.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_946575.1	identified by match to protein family HMM PF02588
YP_946577.1	identified by match to protein family HMM PF01740
YP_946578.1	identified by match to protein family HMM PF00535
YP_946579.1	identified by match to protein family HMM PF00652; match to protein family HMM PF00722
YP_946580.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831
YP_946581.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_946583.1	identified by match to protein family HMM PF07987
YP_946590.1	identified by match to protein family HMM PF00534
YP_946592.1	identified by match to protein family HMM PF00903
YP_946593.1	identified by match to protein family HMM PF00383
YP_946594.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_946596.1	identified by match to protein family HMM PF00903
YP_946597.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_946598.1	identified by match to protein family HMM PF00282; match to protein family HMM PF01212
YP_946599.1	identified by match to protein family HMM PF00535
YP_946601.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_946602.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_946603.1	identified by match to protein family HMM PF00486
YP_946604.1	identified by match to protein family HMM PF00300
YP_946606.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946607.1	identified by match to protein family HMM PF00892
YP_946608.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_946609.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02909
YP_946610.1	identified by match to protein family HMM PF07969
YP_946611.1	identified by match to protein family HMM PF00496
YP_946612.1	identified by match to protein family HMM PF00528
YP_946613.1	identified by match to protein family HMM PF00528
YP_946614.1	identified by match to protein family HMM PF00005
YP_946615.1	identified by match to protein family HMM PF01266
YP_946617.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_946619.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_946620.1	identified by match to protein family HMM PF00581
YP_946621.1	Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate
YP_946622.1	identified by match to protein family HMM PF00480
YP_946623.1	identified by match to protein family HMM PF00701
YP_946624.1	identified by match to protein family HMM PF00005
YP_946625.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00528
YP_946626.1	identified by match to protein family HMM PF00528
YP_946627.1	identified by match to protein family HMM PF00496; match to protein family HMM TIGR01409
YP_946628.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946629.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_946630.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_946631.1	identified by match to protein family HMM PF02082
YP_946633.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_946634.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614
YP_946635.1	identified by match to protein family HMM PF07690
YP_946636.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_946638.1	identified by match to protein family HMM PF00324
YP_946639.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872; match to protein family HMM PF03372
YP_946640.1	identified by match to protein family HMM PF00903
YP_946641.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824
YP_946642.1	identified by match to protein family HMM PF03551
YP_946643.1	identified by match to protein family HMM PF02554
YP_946647.1	identified by match to protein family HMM PF00248
YP_946648.1	identified by match to protein family HMM PF01037
YP_946649.1	identified by match to protein family HMM PF01425
YP_946652.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_946654.1	identified by match to protein family HMM PF00171
YP_946655.1	identified by match to protein family HMM PF00456
YP_946656.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_946657.1	identified by match to protein family HMM PF00294
YP_946658.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370
YP_946659.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_946662.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_946663.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_946664.1	identified by match to protein family HMM PF00126; match to protein family HMM PF01047; match to protein family HMM PF03466
YP_946665.1	identified by match to protein family HMM PF04909
YP_946666.1	identified by match to protein family HMM PF01106
YP_946667.1	identified by match to protein family HMM PF00106
YP_946668.1	identified by match to protein family HMM PF00532
YP_946669.1	identified by match to protein family HMM PF00005
YP_946670.1	identified by match to protein family HMM PF02653
YP_946671.1	identified by match to protein family HMM PF00106
YP_946672.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_946673.1	identified by match to protein family HMM PF00296
YP_946674.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946675.1	identified by match to protein family HMM PF01047
YP_946676.1	identified by match to protein family HMM PF01590
YP_946677.1	identified by match to protein family HMM PF01965
YP_946678.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_946679.1	identified by match to protein family HMM PF00702
YP_946680.1	identified by match to protein family HMM PF00561
YP_946681.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_946682.1	identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041
YP_946683.1	identified by match to protein family HMM PF01053
YP_946686.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_946687.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_946688.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_946689.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_946691.1	identified by match to protein family HMM PF02559
YP_946692.1	identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453
YP_946693.1	identified by match to protein family HMM PF02542; match to protein family HMM TIGR00151
YP_946695.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_946696.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_946697.1	identified by match to protein family HMM PF00795
YP_946698.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_946699.1	identified by match to protein family HMM PF00545
YP_946701.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094
YP_946702.1	identified by match to protein family HMM PF00128
YP_946703.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456
YP_946704.2	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_946705.1	identified by similarity to RF:ZP_00863803.1
YP_946706.1	identified by match to protein family HMM PF00583
YP_946707.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946708.1	identified by match to protein family HMM PF00128
YP_946709.1	identified by match to protein family HMM PF01547
YP_946710.1	identified by match to protein family HMM PF00528
YP_946711.1	identified by match to protein family HMM PF00528
YP_946712.1	identified by match to protein family HMM PF00128
YP_946713.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_946714.1	identified by match to protein family HMM PF07690
YP_946716.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_946717.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946719.1	identified by match to protein family HMM PF00728; match to protein family HMM PF02838
YP_946720.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_946721.1	identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_946722.1	identified by similarity to GB:AAQ16095.1; similarity to GB:AAT89159.1; match to protein family HMM PF00982
YP_946723.1	identified by match to protein family HMM PF01323
YP_946726.1	identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00745
YP_946733.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946734.1	identified by match to protein family HMM PF00528
YP_946735.1	identified by match to protein family HMM PF00528
YP_946736.1	identified by match to protein family HMM PF01547
YP_946737.1	identified by match to protein family HMM PF00251
YP_946738.1	identified by match to protein family HMM PF00251; match to protein family HMM TIGR01409
YP_946740.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614
YP_946741.1	identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196
YP_946742.1	identified by match to protein family HMM PF00300
YP_946743.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF07992
YP_946745.1	identified by match to protein family HMM PF05853
YP_946746.1	identified by match to protein family HMM PF01904
YP_946750.1	identified by match to protein family HMM PF01047
YP_946751.1	identified by match to protein family HMM PF00106
YP_946752.1	identified by match to protein family HMM PF04909
YP_946753.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_946754.1	identified by match to protein family HMM PF01575
YP_946755.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946756.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR01923
YP_946757.1	identified by match to protein family HMM PF05656
YP_946758.1	catalyzed the formation of 2-ketoglutarate from 2-hydroxyglutarate
YP_946759.1	identified by match to protein family HMM PF02517
YP_946763.1	identified by match to protein family HMM PF00324
YP_946764.1	identified by match to protein family HMM PF04371
YP_946765.1	identified by match to protein family HMM PF01844
YP_946766.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_946767.1	identified by match to protein family HMM PF01381
YP_946768.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_946769.1	identified by match to protein family HMM PF07992
YP_946771.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_946775.1	identified by match to protein family HMM PF07690
YP_946776.1	identified by match to protein family HMM PF00440
YP_946777.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_946778.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_946779.1	identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_946780.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_946782.1	identified by match to protein family HMM PF01223
YP_946783.1	identified by match to protein family HMM PF02388
YP_946784.1	identified by match to protein family HMM PF02388
YP_946785.1	identified by match to protein family HMM PF06738
YP_946786.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_946787.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_946790.1	identified by match to protein family HMM PF00313
YP_946791.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_946792.1	identified by match to protein family HMM PF00075
YP_946793.1	identified by match to protein family HMM PF06013
YP_946794.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_946795.1	identified by match to protein family HMM PF01810
YP_946796.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_946798.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_946800.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_946802.1	identified by match to protein family HMM PF00313
YP_946804.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_946805.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_946806.1	identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_946807.1	identified by match to protein family HMM PF01551
YP_946808.1	identified by match to protein family HMM PF00877
YP_946809.1	identified by match to protein family HMM PF01844
YP_946811.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454
YP_946812.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701
YP_946813.1	identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129
YP_946814.1	identified by match to protein family HMM PF01074; match to protein family HMM PF07748
YP_946817.1	identified by match to protein family HMM PF00005
YP_946818.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_946819.1	identified by match to protein family HMM PF00497
YP_946822.1	identified by match to protein family HMM PF00005
YP_946823.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_946824.1	identified by match to protein family HMM PF00293
YP_946828.1	identified by match to protein family HMM PF00459
YP_946829.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_946832.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_946833.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_946834.1	identified by match to protein family HMM PF00754; match to protein family HMM PF01839
YP_946835.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_946839.1	identified by match to protein family HMM PF01988
YP_946842.1	identified by match to protein family HMM PF00474
YP_946843.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_946846.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_946847.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_946848.1	identified by match to protein family HMM PF01047
YP_946849.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_946850.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_946851.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_946853.1	identified by match to protein family HMM PF03932
YP_946855.1	identified by match to protein family HMM PF07721
YP_946860.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_946861.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_946862.1	identified by match to protein family HMM PF00037
YP_946863.1	identified by match to protein family HMM PF00171
YP_946864.1	identified by match to protein family HMM PF00106
YP_946865.1	identified by match to protein family HMM PF00701
YP_946866.1	identified by match to protein family HMM PF00378
YP_946867.1	identified by match to protein family HMM PF02515
YP_946868.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266
YP_946869.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946870.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_946873.1	identified by match to protein family HMM PF03852
YP_946875.1	identified by match to protein family HMM TIGR00347
YP_946876.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_946877.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00508
YP_946879.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_946880.1	identified by match to protein family HMM PF02133
YP_946881.1	identified by match to protein family HMM PF05532
YP_946882.1	identified by match to protein family HMM PF00106
YP_946883.1	identified by match to protein family HMM PF00107
YP_946887.1	identified by match to protein family HMM PF00724
YP_946888.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_946889.1	identified by match to protein family HMM PF01261
YP_946890.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_946891.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133
YP_946892.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737; match to protein family HMM PF03721
YP_946893.1	identified by match to protein family HMM PF00106
YP_946895.1	identified by match to protein family HMM PF07690
YP_946896.1	identified by match to protein family HMM PF00121
YP_946898.1	identified by match to protein family HMM PF00383
YP_946899.1	identified by match to protein family HMM PF00571
YP_946901.1	identified by match to protein family HMM PF00575
YP_946902.1	identified by match to protein family HMM PF00561
YP_946903.1	identified by match to protein family HMM PF07784
YP_946905.1	identified by match to protein family HMM PF00962; match to protein family HMM TIGR01430
YP_946907.1	catalyzes the hydrolysis of acylphosphate
YP_946908.1	identified by match to protein family HMM PF00440
YP_946909.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_946910.1	identified by match to protein family HMM PF00294
YP_946911.1	identified by match to protein family HMM PF00392
YP_946912.1	identified by match to protein family HMM PF07690
YP_946913.1	identified by match to protein family HMM PF01156
YP_946914.1	identified by match to protein family HMM PF01022
YP_946915.1	identified by match to protein family HMM PF02449
YP_946916.1	identified by match to protein family HMM PF00528
YP_946917.1	identified by match to protein family HMM PF00528
YP_946918.1	identified by match to protein family HMM PF01547
YP_946920.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_946921.1	identified by match to protein family HMM PF01844
YP_946923.1	identified by match to protein family HMM PF00903
YP_946926.1	identified by match to protein family HMM PF00583
YP_946927.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_946928.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_946930.1	identified by match to protein family HMM PF07883
YP_946931.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_946933.1	identified by match to protein family HMM PF03861
YP_946934.1	identified by match to protein family HMM PF07690
YP_946935.1	identified by match to protein family HMM PF00165
YP_946936.1	identified by match to protein family HMM PF00107
YP_946937.1	identified by match to protein family HMM PF00561
YP_946938.1	identified by match to protein family HMM PF00440
YP_946939.1	identified by match to protein family HMM PF03741
YP_946943.1	identified by match to protein family HMM PF01022
YP_946944.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_946945.1	identified by match to protein family HMM PF01047
YP_946946.1	identified by match to protein family HMM PF00892
YP_946950.1	identified by similarity to GB:BAC15296.1
YP_946951.1	identified by match to protein family HMM PF03235
YP_946953.1	identified by match to protein family HMM PF00324
YP_946954.1	identified by match to protein family HMM PF00106
YP_946956.1	identified by match to protein family HMM PF01266
YP_946960.1	identified by match to protein family HMM PF00313
YP_946962.1	identified by match to protein family HMM PF00005
YP_946963.1	identified by similarity to GB:AAD45617.1
YP_946964.1	identified by match to protein family HMM PF00196
YP_946965.1	identified by match to protein family HMM PF00324; match to protein family HMM PF01490; match to protein family HMM TIGR01409
YP_946966.1	identified by match to protein family HMM PF07690
YP_946967.1	identified by match to protein family HMM PF06821
YP_946968.1	identified by match to protein family HMM PF00984; match to protein family HMM PF02737; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_946969.1	identified by match to protein family HMM PF00534
YP_946970.1	identified by match to protein family HMM PF01844; match to protein family HMM TIGR02646
YP_946972.1	identified by match to protein family HMM PF00376
YP_946973.1	identified by match to protein family HMM PF00011
YP_946974.1	identified by match to protein family HMM PF00226
YP_946976.1	identified by match to protein family HMM PF00903
YP_946979.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_946980.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_946981.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_946984.1	involved in de novo purine biosynthesis
YP_946987.1	identified by match to protein family HMM PF03971; match to protein family HMM TIGR00178
YP_946988.1	identified by match to protein family HMM PF01266
YP_946989.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_946990.1	identified by match to protein family HMM PF00005
YP_946991.1	identified by match to protein family HMM TIGR01098
YP_946992.1	identified by match to protein family HMM PF01266
YP_946993.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_946994.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_946995.1	identified by match to protein family HMM PF07681
YP_946996.1	identified by match to protein family HMM PF00005
YP_946997.1	identified by match to protein family HMM PF02687
YP_946999.1	identified by match to protein family HMM PF02653
YP_947000.1	identified by match to protein family HMM PF00005
YP_947001.1	identified by match to protein family HMM PF00480
YP_947002.1	identified by match to protein family HMM PF00795
YP_947003.1	identified by match to protein family HMM PF07905
YP_947004.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_947005.1	identified by match to protein family HMM PF00324
YP_947006.1	identified by match to protein family HMM PF01593
YP_947008.1	identified by match to protein family HMM PF03551
YP_947009.1	identified by match to protein family HMM PF00132
YP_947011.1	identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655
YP_947012.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_947013.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_947014.1	identified by match to protein family HMM PF00005
YP_947015.1	identified by match to protein family HMM PF01061
YP_947016.1	identified by match to protein family HMM PF01061
YP_947017.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947019.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_947021.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_947022.1	identified by match to protein family HMM PF00579; match to protein family HMM TIGR00233
YP_947023.1	identified by match to protein family HMM PF02834
YP_947024.1	identified by match to protein family HMM PF03631
YP_947026.1	identified by match to protein family HMM PF04616
YP_947027.1	identified by match to protein family HMM PF01547
YP_947028.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_947029.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_947031.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_947032.1	identified by match to protein family HMM PF00483
YP_947033.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_947034.1	identified by match to protein family HMM PF01047
YP_947035.1	identified by similarity to SP:O68390; match to protein family HMM PF02566
YP_947036.1	identified by match to protein family HMM PF00107
YP_947037.1	identified by match to protein family HMM PF02608
YP_947038.1	identified by match to protein family HMM PF00005
YP_947039.1	identified by match to protein family HMM PF02653
YP_947040.1	identified by match to protein family HMM PF02653
YP_947041.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354
YP_947042.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_947045.1	catalyzes the formation of inosine from adenosine
YP_947046.1	identified by match to protein family HMM PF03819
YP_947047.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_947048.1	identified by match to protein family HMM PF04977
YP_947049.1	identified by match to protein family HMM PF04417
YP_947050.1	identified by match to protein family HMM PF02541
YP_947051.1	identified by match to protein family HMM PF00082
YP_947052.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_947053.1	identified by match to protein family HMM PF00583
YP_947054.1	identified by match to protein family HMM PF01094
YP_947055.1	identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147
YP_947056.1	identified by match to protein family HMM PF00005
YP_947057.1	identified by match to protein family HMM PF00005
YP_947058.1	identified by match to protein family HMM PF02653
YP_947059.1	identified by match to protein family HMM PF02653
YP_947060.1	identified by match to protein family HMM PF06539
YP_947061.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_947062.1	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00131
YP_947063.1	identified by match to protein family HMM PF01087; match to protein family HMM PF02744; match to protein family HMM TIGR00209
YP_947064.1	identified by match to protein family HMM PF01263
YP_947065.1	identified by match to protein family HMM PF01594
YP_947066.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_947067.1	identified by match to protein family HMM PF01694
YP_947068.1	identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_947070.1	identified by match to protein family HMM PF02585
YP_947072.1	identified by match to protein family HMM PF03190
YP_947073.1	identified by match to protein family HMM PF03006
YP_947074.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_947075.1	related to phosphate starvation-inducible protein, PhoH family; identified by match to protein family HMM PF02562
YP_947078.1	identified by match to protein family HMM PF01478
YP_947079.1	identified by match to protein family HMM PF00293
YP_947080.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_947081.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_947082.1	identified by match to protein family HMM PF00484
YP_947084.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_947085.1	identified by match to protein family HMM PF02388
YP_947086.1	identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218
YP_947087.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_947088.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_947089.1	identified by match to protein family HMM PF02222; match to protein family HMM TIGR01161
YP_947090.1	identified by match to protein family HMM PF04138
YP_947091.1	identified by match to protein family HMM TIGR03089
YP_947092.1	identified by match to protein family HMM PF02467
YP_947093.1	identified by match to protein family HMM PF00535
YP_947097.1	identified by match to protein family HMM PF03966
YP_947098.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_947099.1	identified by match to protein family HMM PF03734
YP_947101.1	identified by match to protein family HMM PF00805
YP_947102.1	identified by match to protein family HMM PF06271
YP_947104.1	identified by match to protein family HMM TIGR01906
YP_947107.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_947109.1	identified by match to protein family HMM PF02985
YP_947110.1	identified by match to protein family HMM PF00501
YP_947111.1	identified by match to protein family HMM PF02366
YP_947112.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_947113.1	identified by match to protein family HMM PF00171
YP_947114.1	identified by match to protein family HMM PF01841
YP_947115.1	identified by match to protein family HMM PF01882
YP_947116.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_947117.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_947118.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06737; match to protein family HMM PF07501
YP_947119.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_947120.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis
YP_947121.1	identified by match to protein family HMM PF00005
YP_947123.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_947124.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_947125.1	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731
YP_947126.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_947127.1	identified by match to protein family HMM PF00196
YP_947128.1	identified by match to protein family HMM PF00196
YP_947130.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_947131.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_947132.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_947135.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_947136.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_947137.1	identified by match to protein family HMM PF04307
YP_947139.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_947140.1	identified by match to protein family HMM PF07992
YP_947142.1	identified by match to protein family HMM PF01872
YP_947143.1	identified by match to protein family HMM PF01022
YP_947144.1	identified by match to protein family HMM PF01545
YP_947145.1	identified by match to protein family HMM PF01323
YP_947146.1	identified by match to protein family HMM PF00717
YP_947147.1	identified by match to protein family HMM PF00532
YP_947148.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879
YP_947150.1	identified by similarity to SP:P06696; match to protein family HMM PF00589; match to protein family HMM PF02899
YP_947151.1	identified by similarity to SP:P06697; match to protein family HMM PF00589
YP_947153.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188
YP_947156.1	catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine
YP_947158.1	identified by match to protein family HMM PF00171
YP_947159.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947160.1	identified by match to protein family HMM PF00665
YP_947161.1	identified by match to protein family HMM PF01527
YP_947162.1	identified by match to protein family HMM PF05899
YP_947163.1	identified by match to protein family HMM PF01526
YP_947165.1	identified by match to protein family HMM PF00903
YP_947166.1	identified by match to protein family HMM PF00589
YP_947168.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_947169.1	identified by match to protein family HMM PF00817
YP_947170.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane
YP_947171.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_947172.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_947173.1	identified by match to protein family HMM TIGR02378
YP_947174.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_947175.1	identified by match to protein family HMM PF00251
YP_947176.1	identified by match to protein family HMM PF02435
YP_947177.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_947178.1	catalyzes the reduction of nonspecific electron acceptors such as 2,6-dimethyl-1,4-benzoquinone and 5-hydroxy-1,4-naphthaquinone; does not have lipoamide dehydrogenase activity
YP_947179.1	identified by match to protein family HMM PF00753
YP_947180.1	identified by match to protein family HMM PF00070; match to protein family HMM PF04324; match to protein family HMM PF07992
YP_947181.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_947182.1	identified by match to protein family HMM PF07690
YP_947183.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947184.1	Includes: Biotincarboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)]; identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_947185.1	identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172
YP_947186.1	identified by match to protein family HMM PF03176
YP_947187.1	identified by match to protein family HMM PF00440
YP_947188.1	identified by match to protein family HMM PF01906
YP_947189.1	identified by match to protein family HMM PF00375
YP_947190.1	identified by match to protein family HMM PF05960
YP_947192.1	identified by match to protein family HMM PF01039
YP_947193.1	identified by match to protein family HMM PF00106
YP_947194.1	identified by similarity to SP:P42975; match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121
YP_947196.1	identified by match to protein family HMM PF00211
YP_947197.1	identified by match to protein family HMM PF00041
YP_947198.1	identified by match to protein family HMM PF00041
YP_947199.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_947200.1	identified by match to protein family HMM PF01882
YP_947201.1	identified by match to protein family HMM PF01841
YP_947202.1	identified by match to protein family HMM PF06271
YP_947203.1	identified by match to protein family HMM PF00481
YP_947205.1	identified by match to protein family HMM PF00069
YP_947207.1	identified by match to protein family HMM PF00498; match to protein family HMM PF01580
YP_947208.1	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_947209.1	identified by match to protein family HMM PF00459
YP_947211.1	identified by match to protein family HMM PF00248
YP_947213.1	identified by match to protein family HMM PF00005
YP_947214.1	identified by match to protein family HMM PF00528
YP_947215.1	identified by match to protein family HMM TIGR01409
YP_947216.1	identified by match to protein family HMM PF00583
YP_947217.1	identified by match to protein family HMM PF01042
YP_947218.1	identified by match to protein family HMM PF00072
YP_947219.1	identified by match to protein family HMM PF02518
YP_947220.1	identified by match to protein family HMM PF03600; match to protein family HMM TIGR00784
YP_947222.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_947223.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_947224.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_947226.1	identified by match to protein family HMM PF03781
YP_947227.1	identified by match to protein family HMM PF00528
YP_947228.1	identified by match to protein family HMM PF00528
YP_947229.1	identified by match to protein family HMM TIGR01409
YP_947230.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_947231.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947232.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_947233.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_947234.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_947235.1	identified by match to protein family HMM PF01527
YP_947236.1	identified by match to protein family HMM PF00665
YP_947237.1	identified by match to protein family HMM PF01266
YP_947238.1	catalyzes the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_947240.1	identified by match to protein family HMM PF01380
YP_947241.1	identified by match to protein family HMM PF00480
YP_947242.1	identified by match to protein family HMM PF00294
YP_947243.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167
YP_947244.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_947245.1	identified by match to protein family HMM PF00300
YP_947246.1	identified by match to protein family HMM PF02517
YP_947248.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_947249.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392
YP_947252.1	identified by match to protein family HMM PF00657
YP_947253.1	identified by match to protein family HMM PF02230
YP_947254.1	identified by match to protein family HMM PF01479
YP_947255.1	identified by match to protein family HMM PF04657
YP_947256.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_947258.1	identified by match to protein family HMM PF07907
YP_947259.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_947260.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353
YP_947261.1	synthesizes RNA primers at the replication forks
YP_947263.1	identified by match to protein family HMM PF00756
YP_947264.1	identified by match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_947266.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_947267.1	identified by match to protein family HMM PF07332
YP_947268.1	identified by match to protein family HMM PF01066
YP_947270.1	identified by match to protein family HMM PF00534
YP_947271.1	identified by match to protein family HMM PF01551
YP_947272.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_947273.1	Catalyzes the phosphorylation of UMP to UDP
YP_947274.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_947275.1	identified by match to protein family HMM PF01148
YP_947278.1	identified by match to protein family HMM PF00474
YP_947280.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_947281.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_947282.1	identified by match to protein family HMM PF04341
YP_947283.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813
YP_947284.1	identified by match to protein family HMM PF02811
YP_947288.1	identified by match to protein family HMM PF01037
YP_947289.1	identified by match to protein family HMM PF00676
YP_947290.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_947291.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_947292.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321
YP_947293.1	identified by match to protein family HMM PF01844
YP_947295.1	identified by match to protein family HMM PF01039
YP_947296.1	Includes: Biotincarboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)]; identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_947297.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_947298.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_947299.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_947300.1	identified by match to protein family HMM PF01575
YP_947301.1	identified by match to protein family HMM PF03328
YP_947302.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947304.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947305.1	identified by match to protein family HMM PF00528
YP_947306.1	identified by match to protein family HMM PF00528
YP_947307.1	identified by match to protein family HMM PF01547
YP_947308.1	identified by match to protein family HMM PF00532
YP_947309.1	identified by match to protein family HMM PF06762
YP_947310.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_947311.1	identified by match to protein family HMM PF02163
YP_947312.1	identified by match to protein family HMM PF03795
YP_947313.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_947314.1	identified by match to protein family HMM PF00583
YP_947316.1	identified by match to protein family HMM PF00440
YP_947317.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR00025
YP_947318.1	identified by match to protein family HMM PF00005
YP_947320.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_947321.1	identified by match to protein family HMM PF01925
YP_947323.1	identified by match to protein family HMM PF01988
YP_947325.1	YhbC family COG0779 protein; identified by match to protein family HMM PF02576
YP_947326.1	identified by match to protein family HMM TIGR01953
YP_947327.1	identified by match to protein family HMM PF04296
YP_947328.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_947329.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_947330.1	identified by match to protein family HMM PF00383
YP_947331.1	identified by match to protein family HMM PF00155
YP_947332.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_947335.1	identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083
YP_947336.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_947337.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR02696
YP_947338.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_947340.1	identified by match to protein family HMM PF02597
YP_947341.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_947342.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_947343.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_947344.1	identified by match to protein family HMM PF00174; match to protein family HMM PF03404
YP_947345.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_947346.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_947347.1	identified by match to protein family HMM PF02391
YP_947348.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_947349.1	identified by match to protein family HMM PF07719
YP_947352.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_947353.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_947354.1	identified by match to protein family HMM PF01580
YP_947355.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_947356.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_947357.1	identified by match to protein family HMM PF01381
YP_947358.1	identified by match to protein family HMM PF01047
YP_947360.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_947361.1	identified by match to protein family HMM PF02631
YP_947362.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_947363.1	identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174
YP_947364.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_947365.1	identified by match to protein family HMM PF05175
YP_947366.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_947367.1	identified by similarity to GB:AAS04748.1
YP_947368.1	Represses a number of genes involved in the response to DNA damage
YP_947369.1	identified by match to protein family HMM PF01476
YP_947370.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_947371.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_947372.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_947374.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide and the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)anthranilate; involved in histidine and tryptophan biosynthesis
YP_947376.1	identified by match to protein family HMM PF07690
YP_947378.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168
YP_947379.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_947380.1	identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032
YP_947381.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_947382.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_947383.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947384.1	identified by match to protein family HMM PF00293
YP_947385.1	identified by match to protein family HMM PF04055
YP_947386.1	identified by match to protein family HMM PF01470; match to protein family HMM TIGR00504
YP_947387.1	identified by match to protein family HMM PF04402
YP_947389.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_947390.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_947391.1	identified by match to protein family HMM PF00089
YP_947393.1	identified by match to protein family HMM PF01433
YP_947394.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353
YP_947395.1	identified by match to protein family HMM PF00107
YP_947396.1	identified by match to protein family HMM PF00487
YP_947397.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_947398.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_947399.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_947400.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_947401.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_947402.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_947403.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_947404.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_947405.1	identified by match to protein family HMM TIGR03083
YP_947406.1	identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029
YP_947407.1	identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567
YP_947409.1	identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234
YP_947413.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460
YP_947415.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_947416.1	catalyzes the phosphorylation of NAD to NADP
YP_947417.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_947418.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_947419.1	identified by match to protein family HMM PF00293
YP_947420.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225
YP_947422.1	identified by match to protein family HMM PF00293
YP_947423.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_947424.1	identified by match to protein family HMM TIGR02317
YP_947425.1	identified by match to protein family HMM PF03972
YP_947426.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_947428.1	identified by match to protein family HMM PF00196
YP_947429.1	identified by match to protein family HMM PF00072
YP_947430.1	identified by match to protein family HMM PF02518
YP_947431.1	identified by match to protein family HMM PF00375
YP_947432.1	identified by match to protein family HMM PF01656
YP_947433.1	identified by match to protein family HMM PF02616
YP_947434.1	identified by match to protein family HMM PF04079
YP_947435.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_947436.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_947437.1	identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017
YP_947438.1	identified by match to protein family HMM PF01553
YP_947439.1	synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_947440.1	identified by match to protein family HMM PF01047
YP_947441.1	identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_947442.1	identified by match to protein family HMM PF00498
YP_947443.1	identified by match to protein family HMM PF00376
YP_947444.1	COG1259; identified by match to protein family HMM PF02577
YP_947446.1	identified by match to protein family HMM PF01656
YP_947447.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_947448.1	identified by match to protein family HMM PF00501
YP_947449.1	identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744
YP_947452.1	identified by match to protein family HMM PF01553
YP_947453.1	identified by match to protein family HMM PF01474; match to protein family HMM TIGR01358
YP_947454.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793
YP_947455.1	identified by match to protein family HMM PF01464; match to protein family HMM PF01476
YP_947457.1	identified by match to protein family HMM PF00348
YP_947459.1	identified by match to protein family HMM PF00817
YP_947461.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_947462.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_947464.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_947465.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085
YP_947466.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_947467.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_947468.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01087
YP_947469.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_947470.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_947471.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_947473.1	identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065
YP_947474.1	identified by match to protein family HMM PF02578
YP_947475.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_947476.1	identified by match to protein family HMM PF04472
YP_947478.1	identified by match to protein family HMM PF05103
YP_947479.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_947480.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_947481.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_947482.1	identified by match to protein family HMM PF01613
YP_947484.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_947485.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_947486.1	identified by match to protein family HMM PF00106
YP_947487.1	identified by match to protein family HMM PF00480
YP_947488.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_947490.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_947491.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_947492.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_947493.1	can hydrolyze p-nitrophenyl sulfate; contains a specific cysteine that is converted into C{alpha]-formylglycine upon activation with the anaerobic sulfatase-maturase
YP_947494.1	identified by match to protein family HMM PF00583
YP_947499.1	identified by match to protein family HMM PF00583
YP_947500.1	identified by match to protein family HMM PF00665
YP_947501.1	identified by match to protein family HMM PF01527
YP_947503.1	identified by match to protein family HMM PF00589
YP_947504.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_947505.1	identified by match to protein family HMM PF06271
YP_947507.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_947508.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_947509.1	identified by match to protein family HMM PF00069
YP_947510.1	identified by match to protein family HMM PF01370; match to protein family HMM TIGR01777
YP_947511.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572
YP_947512.1	identified by match to protein family HMM PF02566
YP_947513.1	identified by match to protein family HMM PF00903
YP_947515.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR02927
YP_947516.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_947517.1	identified by match to protein family HMM PF00883; match to protein family HMM PF02789
YP_947518.1	identified by match to protein family HMM PF01908
YP_947519.1	identified by match to protein family HMM PF07690
YP_947521.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937
YP_947523.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_947524.1	identified by match to protein family HMM PF07690
YP_947526.1	identified by match to protein family HMM PF01435
YP_947527.1	identified by match to protein family HMM PF03965
YP_947528.1	identified by match to protein family HMM PF01654
YP_947529.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_947530.1	identified by match to protein family HMM PF00583
YP_947533.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_947534.1	identified by match to protein family HMM PF00583; match to protein family HMM PF02629
YP_947536.1	identified by match to protein family HMM PF01663
YP_947537.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_947541.1	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576
YP_947544.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF03807
YP_947545.1	identified by match to protein family HMM PF02254
YP_947547.1	identified by match to protein family HMM PF01938; match to protein family HMM PF05958
YP_947548.1	identified by match to protein family HMM PF00330; match to protein family HMM PF00694; match to protein family HMM TIGR01341
YP_947549.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_947553.1	identified by match to protein family HMM PF00248
YP_947554.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_947555.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_947556.1	identified by match to protein family HMM PF00570; match to protein family HMM PF01612
YP_947558.1	identified by match to protein family HMM PF01212
YP_947559.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_947561.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_947564.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_947565.1	identified by match to protein family HMM PF02657
YP_947566.1	identified by match to protein family HMM PF00581
YP_947567.1	identified by match to protein family HMM PF03969
YP_947568.1	identified by match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_947570.1	identified by match to protein family HMM PF00324
YP_947573.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_947574.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460
YP_947575.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189
YP_947576.1	identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163
YP_947577.1	identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528
YP_947578.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326
YP_947579.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_947580.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_947581.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_947582.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_947583.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_947584.1	identified by match to protein family HMM TIGR03083; match to protein family HMM TIGR03085
YP_947585.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_947586.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564
YP_947589.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_947590.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_947591.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_947592.1	identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544
YP_947593.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_947594.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_947595.1	identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_947596.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_947598.1	identified by match to protein family HMM PF03894
YP_947600.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_947601.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_947602.1	identified by match to protein family HMM PF06772
YP_947604.1	identified by match to protein family HMM PF01613
YP_947605.1	catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate
YP_947607.1	identified by match to protein family HMM PF00126
YP_947610.1	identified by match to protein family HMM PF00248
YP_947612.1	identified by match to protein family HMM PF06736
YP_947613.1	identified by match to protein family HMM PF00199; match to protein family HMM PF01965; match to protein family HMM PF06628
YP_947615.1	identified by match to protein family HMM PF00107
YP_947616.1	identified by match to protein family HMM PF00107
YP_947618.1	identified by match to protein family HMM PF00563
YP_947622.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00070; match to protein family HMM PF07992
YP_947623.1	identified by similarity to RF:ZP_00572214.1
YP_947625.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_947626.1	identified by match to protein family HMM PF01025
YP_947627.1	identified by match to protein family HMM PF00226; match to protein family HMM PF01556
YP_947629.1	identified by similarity to SP:P53533; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_947630.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_947633.1	identified by match to protein family HMM PF00165
YP_947634.1	identified by match to protein family HMM PF00480
YP_947635.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947636.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_947637.1	identified by match to protein family HMM PF02653
YP_947638.1	identified by match to protein family HMM PF00532
YP_947639.1	identified by match to protein family HMM PF01261
YP_947640.1	identified by match to protein family HMM PF01261
YP_947641.1	identified by match to protein family HMM PF00005
YP_947642.1	identified by match to protein family HMM PF01261; match to protein family HMM PF07582
YP_947643.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_947644.1	identified by similarity to SP:Q9I2X0
YP_947645.1	identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550
YP_947646.1	identified by match to protein family HMM PF00165
YP_947648.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_947650.1	identified by match to protein family HMM PF00781
YP_947651.1	identified by match to protein family HMM PF00107
YP_947652.1	identified by match to protein family HMM PF07005
YP_947653.1	identified by similarity to GB:AAK14332.1; match to protein family HMM PF00016
YP_947654.1	transports degraded pectin products into the bacterial cell
YP_947655.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_947656.1	identified by match to protein family HMM PF05738; match to protein family HMM TIGR01451
YP_947657.1	identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_947658.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_947659.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_947661.1	identified by match to protein family HMM PF01212
YP_947662.1	identified by match to protein family HMM PF00005
YP_947663.1	identified by match to protein family HMM PF00528
YP_947664.1	identified by match to protein family HMM PF01547
YP_947665.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947666.1	identified by match to protein family HMM PF00941
YP_947667.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_947668.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_947669.1	identified by match to protein family HMM PF02625
YP_947670.1	identified by match to protein family HMM PF00171
YP_947671.1	identified by match to protein family HMM PF01042
YP_947672.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_947673.1	identified by match to protein family HMM PF00903
YP_947674.1	identified by match to protein family HMM PF00561
YP_947675.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_947676.1	identified by match to protein family HMM PF00106
YP_947677.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_947680.1	identified by match to protein family HMM PF00355
YP_947681.1	identified by match to protein family HMM PF07883
YP_947682.1	identified by match to protein family HMM PF01047
YP_947683.1	identified by match to protein family HMM PF01958; match to protein family HMM PF03447
YP_947684.1	identified by match to protein family HMM PF00202
YP_947685.1	identified by match to protein family HMM PF07905
YP_947686.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_947687.1	catalyzes the reduction of mycothione or glutathione to mycothione or glutathione disulfide
YP_947689.1	identified by match to protein family HMM PF00454
YP_947691.1	identified by match to protein family HMM PF00300
YP_947692.1	identified by match to protein family HMM PF00004
YP_947693.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_947694.1	identified by match to protein family HMM PF00155
YP_947695.1	identified by match to protein family HMM PF05661
YP_947696.1	identified by match to protein family HMM PF01965
YP_947697.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_947698.1	identified by match to protein family HMM PF00496
YP_947699.1	identified by match to protein family HMM PF00528
YP_947700.1	identified by match to protein family HMM PF00528
YP_947701.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_947702.1	identified by match to protein family HMM PF00005
YP_947703.1	identified by match to protein family HMM PF00251
YP_947704.1	identified by match to protein family HMM PF00251; match to protein family HMM TIGR01409
YP_947705.1	identified by match to protein family HMM PF00294
YP_947706.1	identified by match to protein family HMM PF00005
YP_947707.1	identified by match to protein family HMM PF00950
YP_947709.1	identified by match to protein family HMM PF01297
YP_947711.1	identified by match to protein family HMM PF03600; match to protein family HMM PF07158
YP_947712.1	identified by match to protein family HMM PF04303
YP_947713.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_947714.1	identified by match to protein family HMM PF00496
YP_947715.1	identified by match to protein family HMM PF00528
YP_947716.1	identified by match to protein family HMM PF00528
YP_947717.1	identified by match to protein family HMM PF00005
YP_947718.1	identified by match to protein family HMM PF00487
YP_947719.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_947721.1	identified by match to protein family HMM PF01361
YP_947722.1	identified by match to protein family HMM PF00294
YP_947724.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_947725.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_947726.1	identified by match to protein family HMM PF01261
YP_947727.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947728.1	identified by match to protein family HMM PF01261
YP_947729.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947730.1	identified by match to protein family HMM PF01261
YP_947731.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947732.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_947733.1	identified by match to protein family HMM PF00532
YP_947734.1	identified by match to protein family HMM PF02653
YP_947735.1	identified by match to protein family HMM PF00005
YP_947736.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947737.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_947738.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947739.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_947740.1	identified by match to protein family HMM PF06845
YP_947741.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_947742.1	identified by match to protein family HMM PF06150
YP_947743.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_947744.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00561
YP_947745.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_947746.1	identified by match to protein family HMM PF00324
YP_947749.1	identified by match to protein family HMM PF07992
YP_947751.1	identified by match to protein family HMM PF00999
YP_947752.1	identified by match to protein family HMM PF01872
YP_947753.1	identified by match to protein family HMM TIGR02778
YP_947755.1	catalyzes the formation of acetate from pyruvate
YP_947756.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_947757.1	identified by match to protein family HMM PF07366
YP_947758.1	identified by match to protein family HMM PF01042
YP_947760.1	identified by match to protein family HMM PF00005
YP_947761.1	identified by match to protein family HMM PF01497
YP_947762.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_947764.1	identified by match to protein family HMM PF01872
YP_947766.1	identified by match to protein family HMM PF01243
YP_947769.1	identified by match to protein family HMM TIGR01926
YP_947770.1	identified by match to protein family HMM PF01872
YP_947771.1	identified by match to protein family HMM PF07690
YP_947772.1	identified by match to protein family HMM PF05762
YP_947774.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_947776.1	identified by match to protein family HMM PF04434
YP_947777.1	catalyzes the formation of catechol from phenol
YP_947778.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_947780.1	identified by match to protein family HMM PF04946
YP_947781.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_947782.1	identified by similarity to RF:YP_481916.1
YP_947785.1	identified by match to protein family HMM PF00107
YP_947786.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970
YP_947787.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_947788.1	identified by match to protein family HMM PF00324
YP_947790.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_947791.1	identified by match to protein family HMM PF01738
YP_947792.1	identified by match to protein family HMM TIGR02778
YP_947793.1	identified by match to protein family HMM PF00144
YP_947794.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_947796.1	identified by match to protein family HMM PF00005
YP_947798.1	identified by match to protein family HMM PF01869
YP_947799.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_947800.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_947801.1	identified by match to protein family HMM PF00266
YP_947802.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_947804.1	identified by match to protein family HMM PF01384
YP_947808.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_947809.1	identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593
YP_947811.1	identified by match to protein family HMM PF01522
YP_947812.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_947813.1	identified by match to protein family HMM PF01205
YP_947814.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; in Mycobacterium tuberculosis the C-terminal UPF0157 domain appears to be necessary for proper folding of the N-terminal domain
YP_947815.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_947816.1	identified by match to protein family HMM PF03741
YP_947817.1	identified by match to protein family HMM PF07690
YP_947818.1	identified by match to protein family HMM PF00561
YP_947819.1	identified by match to protein family HMM PF00583
YP_947820.1	identified by match to protein family HMM PF02515
YP_947821.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_947823.1	identified by match to protein family HMM PF00392
YP_947824.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_947825.1	identified by match to protein family HMM PF00702
YP_947826.1	identified by match to protein family HMM PF01553
YP_947827.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_947828.1	identified by match to protein family HMM PF03668
YP_947829.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_947830.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_947831.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_947832.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_947833.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_947834.1	identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419
YP_947835.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_947836.1	identified by match to protein family HMM PF01182; match to protein family HMM TIGR01198
YP_947838.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_947839.1	identified by match to protein family HMM PF00342
YP_947840.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate
YP_947841.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_947842.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_947844.1	identified by match to protein family HMM PF02628
YP_947845.1	identified by match to protein family HMM PF01061
YP_947846.1	identified by match to protein family HMM PF00005
YP_947847.1	identified by match to protein family HMM PF01022
YP_947848.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_947849.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_947850.1	identified by match to protein family HMM PF00355
YP_947851.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_947852.1	identified by match to protein family HMM PF01883
YP_947853.1	identified by match to protein family HMM PF04228
YP_947854.1	identified by match to protein family HMM PF00501
YP_947855.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_947856.1	identified by match to protein family HMM PF02361
YP_947857.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02463
YP_947858.1	identified by match to protein family HMM PF02632
YP_947859.1	identified by match to protein family HMM PF00005
YP_947860.1	identified by match to protein family HMM PF04073
YP_947864.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830
YP_947865.1	identified by match to protein family HMM PF00106
YP_947866.1	identified by match to protein family HMM PF00005
YP_947868.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_947869.1	identified by match to protein family HMM PF00005
YP_947870.1	identified by match to protein family HMM PF01925
YP_947871.1	identified by match to protein family HMM PF00588
YP_947872.1	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105
YP_947873.1	identified by match to protein family HMM PF03099
YP_947874.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412
YP_947875.1	identified by match to protein family HMM PF03601
YP_947876.1	identified by match to protein family HMM PF04169; match to protein family HMM PF04174
YP_947877.1	identified by match to protein family HMM PF04168
YP_947878.1	identified by match to protein family HMM PF01841
YP_947880.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_947881.1	identified by match to protein family HMM PF00534; match to protein family HMM TIGR02149
YP_947882.1	identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770
YP_947883.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_947884.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_947885.1	identified by match to protein family HMM PF01575
YP_947886.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_947887.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_947888.1	identified by similarity to RF:ZP_00619294.1
YP_947891.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025
YP_947892.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408
YP_947893.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_947894.1	identified by match to protein family HMM PF01041
YP_947895.1	identified by match to protein family HMM PF00132
YP_947896.1	identified by match to protein family HMM PF00534
YP_947897.1	identified by match to protein family HMM PF00535; match to protein family HMM PF01943
YP_947900.1	identified by match to protein family HMM PF04932
YP_947901.1	identified by match to protein family HMM PF02706
YP_947902.1	identified by match to protein family HMM PF00534
YP_947904.1	identified by match to protein family HMM PF00535
YP_947905.1	identified by match to protein family HMM PF00535; match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_947906.1	identified by similarity to GB:BAC17153.1; match to protein family HMM PF00908; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_947907.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_947908.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_947909.1	identified by match to protein family HMM PF00248
YP_947910.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_947911.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_947912.1	identified by match to protein family HMM PF01908
YP_947913.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_947914.1	identified by match to protein family HMM PF02163
YP_947916.1	identified by match to protein family HMM PF00004
YP_947917.1	identified by match to protein family HMM PF03136; match to protein family HMM PF03316
YP_947919.1	identified by match to protein family HMM PF00227
YP_947920.1	identified by match to protein family HMM PF00227
YP_947921.1	identified by match to protein family HMM PF03136; match to protein family HMM PF03316
YP_947922.1	identified by match to protein family HMM PF00254
YP_947923.1	identified by similarity to SP:P25138; match to protein family HMM PF00254
YP_947926.1	identified by match to protein family HMM PF02416
YP_947927.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_947928.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF08148
YP_947929.1	identified by match to protein family HMM PF07969
YP_947930.1	identified by match to protein family HMM PF00535
YP_947932.1	identified by match to protein family HMM PF01145
YP_947933.1	identified by match to protein family HMM PF01957
YP_947935.1	identified by match to protein family HMM PF00326; match to protein family HMM PF05448; match to protein family HMM PF07676
YP_947936.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_947938.1	identified by match to protein family HMM PF01494
YP_947940.1	identified by match to protein family HMM PF00195; match to protein family HMM PF02797
YP_947941.1	identified by match to protein family HMM PF00005
YP_947943.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_947944.1	identified by match to protein family HMM PF00903
YP_947946.1	identified by match to protein family HMM PF01037
YP_947947.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_947949.1	identified by match to protein family HMM PF00034
YP_947950.1	identified by match to protein family HMM PF00355
YP_947951.1	identified by match to protein family HMM PF00033
YP_947952.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_947953.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_947955.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_947956.1	identified by match to protein family HMM PF00116; match to protein family HMM TIGR02866
YP_947957.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_947958.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_947960.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_947961.1	proposed role in polysaccahride synthesis
YP_947962.1	identified by match to protein family HMM PF00561
YP_947963.1	identified by match to protein family HMM PF00561
YP_947964.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_947965.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_947966.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_947967.1	identified by match to protein family HMM PF01431; match to protein family HMM PF05649
YP_947968.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_947969.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_947970.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_947971.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_947972.1	related to phosphate starvation-inducible protein, PhoH family; identified by match to protein family HMM PF02562
YP_947974.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_947975.1	identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349
YP_947976.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_947979.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_947980.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_947982.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_947983.1	identified by match to protein family HMM PF06144; match to protein family HMM TIGR01128
YP_947984.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_947985.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_947986.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_947987.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_947988.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311
YP_947989.1	identified by match to protein family HMM PF00230
YP_947990.1	identified by match to protein family HMM PF01266
YP_947991.1	identified by match to protein family HMM PF04198
YP_947992.1	identified by match to protein family HMM PF00248
YP_947993.1	identified by match to protein family HMM PF00561
YP_947994.1	identified by match to protein family HMM PF00534
YP_947995.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_947996.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_947997.1	identified by match to protein family HMM PF03551
YP_947999.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_948000.1	identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521
YP_948001.1	identified by match to protein family HMM TIGR00690
YP_948002.1	Essential for recycling GMP and indirectly, cGMP
YP_948004.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_948005.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_948006.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_948008.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_948009.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_948010.1	Includes: Pyrimidine operon regulatory protein; Uracil phosphoribosyltransferase (UPRTase); identified by match to protein family HMM PF00156
YP_948012.1	identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951
YP_948013.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_948015.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_948016.1	identified by match to protein family HMM PF01202
YP_948017.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_948018.1	identified by match to protein family HMM PF01488
YP_948019.1	YceG family COG1559 protein; identified by match to protein family HMM PF02618
YP_948020.1	identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250
YP_948021.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_948024.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_948025.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_948027.1	identified by match to protein family HMM PF00583
YP_948028.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_948029.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_948030.1	identified by match to protein family HMM PF00160
YP_948031.1	identified by match to protein family HMM PF03993
YP_948033.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_948034.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_948035.1	identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739
YP_948036.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_948037.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_948038.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_948039.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_948040.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_948042.1	identified by match to protein family HMM PF07685
YP_948044.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_948045.1	identified by match to protein family HMM PF01066
YP_948046.1	identified by match to protein family HMM PF01230
YP_948047.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_948048.1	identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
YP_948050.1	identified by match to protein family HMM PF01494
YP_948052.1	COG2135; identified by match to protein family HMM PF02586
YP_948053.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02200
YP_948054.1	identified by match to protein family HMM PF00107
YP_948055.1	identified by match to protein family HMM PF00753
YP_948056.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701
YP_948061.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00890; match to protein family HMM PF01266
YP_948063.1	identified by match to protein family HMM PF06250
YP_948064.1	identified by match to protein family HMM PF01738
YP_948065.1	identified by match to protein family HMM PF00005
YP_948066.1	identified by match to protein family HMM PF01061
YP_948067.1	identified by match to protein family HMM PF00698
YP_948068.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_948070.1	identified by match to protein family HMM PF07977
YP_948071.1	identified by match to protein family HMM PF00583
YP_948072.1	identified by match to protein family HMM PF01571
YP_948073.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_948075.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_948076.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_948077.1	identified by match to protein family HMM PF07972; match to protein family HMM TIGR00333
YP_948078.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02194
YP_948079.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_948083.1	identified by match to protein family HMM PF00092; match to protein family HMM PF05762
YP_948084.1	identified by match to protein family HMM PF01882
YP_948085.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_948087.1	identified by match to protein family HMM PF00528
YP_948088.1	identified by match to protein family HMM PF00528
YP_948089.1	identified by match to protein family HMM PF01547
YP_948090.1	identified by match to protein family HMM PF00480
YP_948091.1	identified by match to protein family HMM PF05175
YP_948092.1	identified by match to protein family HMM PF07883
YP_948093.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_948095.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_948097.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_948098.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_948099.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_948100.1	involved in the peptidyltransferase reaction during translation
YP_948101.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_948102.1	catalyzes the formation of 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate with the subsequent phosphorylation to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate and catalyzes the hydrolysis of 4-amino-5-aminomethyl-2-methylpyrimidine to form hydroxy-pyrimidine
YP_948103.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_948104.1	identified by match to protein family HMM PF07884
YP_948105.1	identified by match to protein family HMM PF00334
YP_948107.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_948108.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_948109.1	identified by match to protein family HMM PF03372
YP_948110.1	identified by match to protein family HMM PF00106
YP_948111.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_948112.1	identified by match to protein family HMM PF06831
YP_948113.1	identified by match to protein family HMM PF01323
YP_948114.1	binds and unfolds substrates as part of the ClpXP protease
YP_948115.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_948116.1	identified by match to protein family HMM PF00574
YP_948117.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_948118.1	identified by match to protein family HMM PF01149; match to protein family HMM PF06831
YP_948119.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_948120.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412
YP_948121.1	identified by match to protein family HMM PF02566
YP_948122.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_948123.1	identified by match to protein family HMM PF00924
YP_948124.1	identified by match to protein family HMM PF01152
YP_948126.1	identified by match to protein family HMM PF02551
YP_948127.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_948130.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_948131.1	identified by match to protein family HMM PF00583
YP_948132.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_948135.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_948136.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_948140.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent
YP_948141.1	identified by match to protein family HMM PF03883
YP_948143.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_948144.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_948145.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_948146.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_948147.1	identified by match to protein family HMM PF00106
YP_948148.1	identified by match to protein family HMM PF00393; match to protein family HMM PF03446; match to protein family HMM TIGR00873
YP_948149.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_948150.1	identified by match to protein family HMM PF00107
YP_948151.1	identified by match to protein family HMM PF00106
YP_948152.1	identified by match to protein family HMM PF03446
YP_948153.1	identified by match to protein family HMM PF02826
YP_948154.1	identified by match to protein family HMM PF01757
YP_948155.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_948156.1	identified by match to protein family HMM PF01614
YP_948158.1	identified by match to protein family HMM PF02146
YP_948159.1	identified by match to protein family HMM PF00578
YP_948161.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_948163.1	identified by match to protein family HMM PF00698
YP_948164.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_948165.1	carries the fatty acid chain in fatty acid biosynthesis
YP_948166.1	identified by match to protein family HMM PF00109; match to protein family HMM PF02801
YP_948168.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_948169.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_948170.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_948171.1	identified by match to protein family HMM PF02021
YP_948173.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_948174.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_948175.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_948176.1	Essential for efficient processing of 16S rRNA
YP_948178.1	identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002
YP_948180.1	identified by match to protein family HMM PF00903
YP_948181.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_948182.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_948184.1	identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_948185.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_948186.1	identified by match to protein family HMM PF00543
YP_948187.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_948188.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_948189.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_948190.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_948193.1	identified by match to protein family HMM PF07690
YP_948195.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_948196.1	identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191
YP_948197.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_948198.1	identified by match to protein family HMM PF02620
YP_948199.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_948200.1	identified by match to protein family HMM PF00155; match to protein family HMM PF01053; match to protein family HMM PF01212
YP_948202.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_948203.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336
YP_948204.1	identified by match to protein family HMM PF02734
YP_948205.1	identified by match to protein family HMM TIGR01379
YP_948207.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_948208.1	identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM PF07479
YP_948209.1	identified by match to protein family HMM PF01553
YP_948210.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_948211.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_948212.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_948213.1	identified by match to protein family HMM PF01614
YP_948214.1	identified by match to protein family HMM PF08002
YP_948215.1	identified by match to protein family HMM PF01926
YP_948217.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_948218.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_948219.1	identified by match to protein family HMM PF01557
YP_948220.1	identified by match to protein family HMM PF00753
YP_948221.1	identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123
YP_948222.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_948223.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_948224.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_948225.1	identified by match to protein family HMM PF00005
YP_948226.1	identified by match to protein family HMM PF02687
YP_948227.1	identified by match to protein family HMM PF01406; match to protein family HMM TIGR00398
YP_948228.1	identified by match to protein family HMM PF00005
YP_948229.1	identified by match to protein family HMM PF02687
YP_948230.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_948231.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_948232.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_948233.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_948234.2	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_948235.1	identified by match to protein family HMM PF00126; match to protein family HMM PF01022; match to protein family HMM PF03466
YP_948237.1	identified by match to protein family HMM PF07995
YP_948238.1	identified by match to protein family HMM PF01047
YP_948239.1	identified by match to protein family HMM PF00578
YP_948240.1	identified by match to protein family HMM PF00496
YP_948241.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_948242.1	identified by match to protein family HMM PF00873
YP_948243.1	identified by match to protein family HMM PF00296
YP_948244.1	identified by match to protein family HMM PF01047
YP_948245.1	identified by match to protein family HMM PF01841
YP_948247.1	identified by match to protein family HMM PF07920
YP_948248.1	identified by match to protein family HMM PF02040; match to protein family HMM PF03600
YP_948250.1	identified by match to protein family HMM PF01557
YP_948251.1	identified by match to protein family HMM PF04138
YP_948252.1	identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF00282; match to protein family HMM PF01212
YP_948253.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_948254.1	identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551
YP_948255.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_948256.1	identified by match to protein family HMM PF00293
YP_948257.1	identified by match to protein family HMM PF01037
YP_948258.1	identified by match to protein family HMM PF00324
YP_948259.1	identified by match to protein family HMM PF00676
YP_948260.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_948261.1	identified by match to protein family HMM PF00364
YP_948262.1	identified by match to protein family HMM PF00561
YP_948264.1	identified by match to protein family HMM PF00156
YP_948265.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_948268.1	identified by match to protein family HMM PF00324
YP_948269.1	identified by match to protein family HMM PF00165
YP_948270.1	identified by match to protein family HMM PF00884; match to protein family HMM PF01663
YP_948271.1	identified by match to protein family HMM PF00005
YP_948272.1	identified by match to protein family HMM PF00528
YP_948273.1	identified by match to protein family HMM PF00528
YP_948275.1	identified by match to protein family HMM PF07969
YP_948276.1	identified by match to protein family HMM PF00440
YP_948277.1	identified by match to protein family HMM PF07690
YP_948278.1	identified by match to protein family HMM PF02463
YP_948279.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_948280.1	identified by match to protein family HMM PF00230
YP_948282.1	identified by match to protein family HMM PF02656
YP_948283.1	identified by match to protein family HMM PF03747
YP_948285.1	identified by match to protein family HMM PF00533; match to protein family HMM PF00929
YP_948287.1	identified by match to protein family HMM PF00005
YP_948290.1	identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042
YP_948291.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_948293.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_948295.1	identified by match to protein family HMM PF02617
YP_948296.1	identified by match to protein family HMM PF04095; match to protein family HMM TIGR01513
YP_948297.1	identified by match to protein family HMM PF00857
YP_948298.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04851
YP_948300.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_948302.1	identified by match to protein family HMM PF00005
YP_948303.1	identified by match to protein family HMM PF00724
YP_948304.1	identified by match to protein family HMM PF00085
YP_948306.1	identified by match to protein family HMM PF01594
YP_948309.1	identified by match to protein family HMM PF01939
YP_948310.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221
YP_948311.1	identified by match to protein family HMM PF00313
YP_948312.1	identified by similarity to GB:AAN24394.1; match to protein family HMM PF04329; match to protein family HMM PF04330
YP_948313.1	identified by match to protein family HMM PF00756
YP_948315.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_948316.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_948317.2	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_948318.1	identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144
YP_948319.1	identified by match to protein family HMM PF00137
YP_948320.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_948322.1	identified by match to protein family HMM PF00953
YP_948323.1	identified by match to protein family HMM PF00535
YP_948324.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_948325.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_948326.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_948327.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_948329.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_948330.1	identified by match to protein family HMM PF00288; match to protein family HMM TIGR00191
YP_948331.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_948332.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_948333.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_948334.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_948337.1	identified by match to protein family HMM PF00175
YP_948338.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868
YP_948340.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_948341.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_948342.1	identified by match to protein family HMM PF01230
YP_948343.1	identified by match to protein family HMM PF00107
YP_948344.1	identified by match to protein family HMM PF00581
YP_948345.1	identified by match to protein family HMM PF00291
YP_948347.1	identified by match to protein family HMM PF01475
YP_948348.1	identified by match to protein family HMM PF00950
YP_948349.1	identified by match to protein family HMM PF00005
YP_948350.1	identified by match to protein family HMM PF01297
YP_948351.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_948352.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_948353.1	kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth
YP_948355.1	identified by match to protein family HMM PF00144
YP_948357.1	identified by match to protein family HMM PF03551
YP_948358.1	identified by match to protein family HMM TIGR02949
YP_948359.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02947
YP_948360.1	identified by match to protein family HMM PF07681
YP_948361.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_948362.1	identified by match to protein family HMM PF03193
YP_948363.1	identified by match to protein family HMM PF00459; match to protein family HMM TIGR02067
YP_948364.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_948365.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_948366.1	identified by match to protein family HMM PF07690
YP_948368.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_948369.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_948370.1	identified by match to protein family HMM PF01551
YP_948371.1	identified by match to protein family HMM PF02687
YP_948372.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673
YP_948373.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
YP_948376.1	identified by match to protein family HMM PF07811
YP_948378.1	identified by match to protein family HMM PF00482
YP_948379.1	identified by match to protein family HMM PF00482
YP_948380.1	identified by match to protein family HMM PF00437
YP_948381.1	identified by match to protein family HMM PF01183; match to protein family HMM PF01839
YP_948385.1	identified by match to protein family HMM PF01839
YP_948386.1	identified by match to protein family HMM PF00535
YP_948389.1	identified by match to protein family HMM PF00005
YP_948390.1	identified by match to protein family HMM PF01061
YP_948392.1	identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031
YP_948393.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_948394.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212
YP_948396.1	identified by match to protein family HMM PF00498; match to protein family HMM PF01580
YP_948398.1	identified by match to protein family HMM PF02467
YP_948399.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07568
YP_948402.1	identified by match to protein family HMM TIGR01764
YP_948406.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_948407.1	identified by match to protein family HMM PF06224
YP_948408.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_948409.1	identified by match to protein family HMM PF00156
YP_948411.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_948412.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_948416.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_948417.1	identified by match to protein family HMM PF01882
YP_948420.1	identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795
YP_948421.1	identified by match to protein family HMM PF00005
YP_948422.1	identified by match to protein family HMM PF00528
YP_948423.1	identified by match to protein family HMM PF00528
YP_948424.1	identified by match to protein family HMM PF00496
YP_948425.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_948426.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992
YP_948427.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_948430.1	identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147
YP_948432.1	identified by match to protein family HMM PF00588
YP_948433.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_948435.1	identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791
YP_948436.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_948437.1	identified by match to protein family HMM PF02585
YP_948438.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_948439.1	identified by match to protein family HMM PF01012
YP_948440.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_948442.1	identified by match to protein family HMM PF04012
YP_948444.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_948445.1	identified by match to protein family HMM PF03699
YP_948448.1	identified by match to protein family HMM PF01863
YP_948449.1	identified by match to protein family HMM PF00570; match to protein family HMM PF00580
YP_948450.1	identified by match to protein family HMM PF00293
YP_948451.1	identified by match to protein family HMM PF01636
YP_948452.1	identified by match to protein family HMM PF00580
YP_948453.1	identified by match to protein family HMM PF00580
YP_948454.1	identified by match to protein family HMM PF01035
YP_948455.1	3'-5' exonuclease of DNA polymerase III
YP_948456.1	identified by match to protein family HMM PF00497
YP_948457.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_948458.1	identified by match to protein family HMM PF00005
YP_948459.1	identified by match to protein family HMM PF00933
YP_948460.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_948461.1	identified by match to protein family HMM PF00296
YP_948462.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_948463.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_948464.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_948465.1	identified by match to protein family HMM PF06778
YP_948466.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR00562
YP_948467.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_948468.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_948469.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00899; match to protein family HMM PF05237
YP_948470.1	identified by match to protein family HMM PF00440
YP_948473.1	identified by match to protein family HMM PF01329
YP_948474.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_948475.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683
YP_948476.1	identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352
YP_948477.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_948479.1	identified by match to protein family HMM PF05154
YP_948480.1	identified by match to protein family HMM PF00773
YP_948481.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_948482.1	identified by match to protein family HMM PF01555
YP_948483.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_948484.1	identified by match to protein family HMM PF02811
YP_948485.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_948487.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448
YP_948488.1	identified by match to protein family HMM PF06210
YP_948489.1	identified by match to protein family HMM PF01883
YP_948492.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_948493.1	identified by match to protein family HMM PF01596; match to protein family HMM PF05175
YP_948496.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_948497.1	identified by match to protein family HMM PF00005
YP_948498.1	identified by match to protein family HMM PF00497
YP_948499.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_948500.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_948501.1	catalyzes the formation of succinate and diaminoheptanedioate from succinyldiaminoheptanedioate
YP_948502.1	identified by similarity to GB:CAA06232.1
YP_948505.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_948506.1	identified by match to protein family HMM PF00285; match to protein family HMM TIGR01798
YP_948507.1	catalyzes the formation of N-succinyl-LL-2,6-diaminopimelate from N-succinyl-L-2-amino-6-oxopimelate in lysine biosynthesis
YP_948508.1	identified by match to protein family HMM PF00037
YP_948510.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_948511.1	identified by match to protein family HMM PF00657
YP_948512.1	identified by match to protein family HMM PF00005
YP_948513.1	identified by match to protein family HMM PF00528
YP_948514.1	identified by match to protein family HMM PF00528
YP_948515.1	identified by match to protein family HMM PF00496
YP_948517.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_948518.1	identified by match to protein family HMM PF02646
YP_948520.1	identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237
YP_948521.1	identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280
YP_948522.1	identified by match to protein family HMM PF03976
YP_948523.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_948524.1	identified by match to protein family HMM PF04069
YP_948525.1	identified by match to protein family HMM PF00528
YP_948526.1	identified by match to protein family HMM PF00528
YP_948527.1	identified by match to protein family HMM PF00005
YP_948528.1	identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157
YP_948530.1	identified by match to protein family HMM PF00293
YP_948531.1	identified by similarity to PIR:JC5618; match to protein family HMM PF01301; match to protein family HMM PF02449
YP_948532.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_948533.1	identified by match to protein family HMM PF01869
YP_948534.1	identified by match to protein family HMM PF03060
YP_948535.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_948536.1	identified by match to protein family HMM PF07690
YP_948537.1	identified by match to protein family HMM PF06736
YP_948538.1	identified by match to protein family HMM PF01037
YP_948539.1	identified by match to protein family HMM PF07690
YP_948540.1	identified by match to protein family HMM PF01037
YP_948542.1	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383
YP_948543.1	identified by match to protein family HMM PF03969
YP_948544.1	identified by match to protein family HMM PF00210; match to protein family HMM PF02915
YP_948545.1	identified by match to protein family HMM PF02537
YP_948546.1	identified by match to protein family HMM PF02537
YP_948547.1	identified by match to protein family HMM PF00582
YP_948548.1	identified by match to protein family HMM PF03109
YP_948549.1	identified by match to protein family HMM PF03551
YP_948550.1	identified by match to protein family HMM PF03551
YP_948558.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368
YP_948560.1	identified by match to protein family HMM PF00583
YP_948561.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_948562.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_948563.1	identified by match to protein family HMM TIGR02605
YP_948564.1	identified by match to protein family HMM PF06981
YP_948565.1	identified by similarity to GB:AAT88548.1
YP_948566.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_948569.1	identified by match to protein family HMM PF00359
YP_948570.1	identified by match to protein family HMM PF01266
YP_948574.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_948575.1	identified by match to protein family HMM PF00005
YP_948576.1	identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302
YP_948577.1	identified by match to protein family HMM PF01757
YP_948578.1	identified by match to protein family HMM PF01757
YP_948579.1	identified by match to protein family HMM PF07992
YP_948580.1	identified by similarity to RF:ZP_00615625.1
YP_948582.1	identified by match to protein family HMM PF00196
YP_948583.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_948584.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_948587.1	catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_948588.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_948589.1	identified by match to protein family HMM PF07683
YP_948590.1	ATP-dependent carboxylate-amine ligase
YP_948592.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_948593.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_948594.1	identified by match to protein family HMM PF00814
YP_948595.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_948596.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_948597.1	identified by match to protein family HMM PF00294
YP_948598.1	identified by match to protein family HMM PF02056
YP_948599.1	identified by match to protein family HMM PF00583
YP_948600.1	identified by match to protein family HMM PF00534
YP_948601.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_948602.1	identified by match to protein family HMM PF01658; match to protein family HMM PF07994
YP_948603.1	identified by match to protein family HMM PF00248
YP_948604.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402
YP_948605.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401
YP_948606.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_948607.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196
YP_948608.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_948609.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_948610.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_948611.1	identified by match to protein family HMM PF02557
YP_948612.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_948613.1	forms a direct contact with the tRNA during translation
YP_948614.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_948615.1	identified by match to protein family HMM PF01478
YP_948617.1	identified by match to protein family HMM PF07811
YP_948619.1	identified by match to protein family HMM PF06981
YP_948621.1	identified by match to protein family HMM PF00437
YP_948622.1	identified by match to protein family HMM PF00482
YP_948623.1	identified by match to protein family HMM PF00482
YP_948625.1	identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071
YP_948626.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_948627.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_948628.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_948629.2	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_948630.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_948631.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_948632.1	identified by match to protein family HMM PF03576
YP_948633.1	identified by match to protein family HMM PF00528
YP_948634.1	identified by match to protein family HMM PF00528
YP_948635.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409
YP_948636.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_948637.1	identified by match to protein family HMM PF00406; match to protein family HMM TIGR01351
YP_948638.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_948639.1	identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071
YP_948640.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_948641.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_948642.1	identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060
YP_948643.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_948644.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_948645.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_948646.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_948647.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_948648.1	identified by match to protein family HMM PF00366
YP_948649.1	identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012
YP_948650.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_948651.1	identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009
YP_948652.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_948653.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_948654.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_948655.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_948656.1	identified by match to protein family HMM PF00573
YP_948657.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_948658.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_948659.1	identified by match to protein family HMM PF00232
YP_948661.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_948662.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_948663.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_948664.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_948665.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_948666.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_948667.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_948668.1	identified by match to protein family HMM PF04073
YP_948669.1	identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855
YP_948670.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_948671.1	identified by match to protein family HMM PF00583
YP_948672.1	identified by match to protein family HMM PF00583
YP_948673.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_948674.1	binds directly to 23S ribosomal RNA
YP_948675.1	identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922
YP_948676.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_948677.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_948678.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_948679.1	identified by match to protein family HMM PF02518; match to protein family HMM PF04024
YP_948683.1	identified by match to protein family HMM PF04024
YP_948684.1	identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483
YP_948685.1	identified by match to protein family HMM PF00583
YP_948686.1	identified by match to protein family HMM PF03551
YP_948687.1	identified by match to protein family HMM PF00023
YP_948688.1	identified by match to protein family HMM PF01571
YP_948693.1	identified by match to protein family HMM PF00486
YP_948694.1	identified by match to protein family HMM PF00583
YP_948695.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_948696.1	identified by match to protein family HMM PF00293; match to protein family HMM PF00300
YP_948699.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_948700.1	identified by match to protein family HMM PF00186
YP_948702.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_948706.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02873
YP_948707.1	identified by match to protein family HMM PF07690
YP_948708.1	identified by match to protein family HMM PF01575
YP_948712.1	identified by match to protein family HMM PF03328
YP_948714.1	identified by match to protein family HMM PF00005
YP_948715.1	identified by match to protein family HMM PF00528
YP_948716.1	identified by match to protein family HMM PF02668
YP_948717.1	identified by match to protein family HMM PF00128
YP_948718.1	identified by match to protein family HMM PF00528
YP_948719.1	identified by match to protein family HMM PF00528
YP_948720.1	identified by match to protein family HMM PF01547
YP_948721.1	identified by match to protein family HMM PF00480
YP_948722.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_948723.1	identified by match to protein family HMM PF01370
YP_948724.1	identified by match to protein family HMM PF01476
YP_948725.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_948726.1	identified by match to protein family HMM PF03473
YP_948727.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_948728.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_948729.1	identified by match to protein family HMM TIGR01409
YP_948730.1	identified by match to protein family HMM PF03738
YP_948731.1	identified by match to protein family HMM PF00324
YP_948732.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_948733.1	identified by match to protein family HMM PF00440
YP_948734.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409
YP_948735.1	identified by match to protein family HMM PF00528
YP_948736.1	identified by match to protein family HMM PF00528
YP_948737.1	identified by match to protein family HMM PF07690
YP_948738.1	identified by match to protein family HMM PF01638
YP_948739.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409
YP_948740.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_948741.1	identified by match to protein family HMM PF00291; match to protein family HMM PF00571; match to protein family HMM TIGR01137
YP_948742.1	identified by match to protein family HMM PF00903
YP_948744.1	identified by match to protein family HMM PF00005
YP_948745.1	identified by match to protein family HMM PF01061
YP_948746.1	identified by match to protein family HMM PF00501
YP_948747.1	identified by match to protein family HMM PF03992
YP_948748.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_948749.1	identified by match to protein family HMM PF00005
YP_948753.1	identified by match to protein family HMM PF00520; match to protein family HMM PF07885
YP_948755.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_948756.1	metalloprotease
YP_948757.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_948759.1	identified by match to protein family HMM PF01475
YP_948760.1	identified by match to protein family HMM PF00199
YP_948761.1	identified by match to protein family HMM TIGR02453
YP_948762.1	identified by match to protein family HMM PF00324
YP_948764.1	identified by match to protein family HMM PF00107
YP_948765.1	identified by match to protein family HMM PF00171
YP_948766.1	identified by match to protein family HMM PF00486; match to protein family HMM PF01590
YP_948767.1	identified by match to protein family HMM PF07992
YP_948768.1	identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688
YP_948769.1	identified by match to protein family HMM PF02278; match to protein family HMM PF08124; match to protein family HMM TIGR01409
YP_948770.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_948771.1	identified by match to protein family HMM PF00171
YP_948772.1	identified by match to protein family HMM PF07905
YP_948773.1	identified by match to protein family HMM PF07690
YP_948774.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_948775.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_948776.1	identified by match to protein family HMM PF07992
YP_948777.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470
YP_948780.1	catalyzes the formation of glutamate from glutamine
YP_948782.1	identified by match to protein family HMM PF00296
YP_948783.1	identified by match to protein family HMM PF01872
YP_948785.1	identified by match to protein family HMM PF03713
YP_948787.1	identified by match to protein family HMM PF00528
YP_948788.1	identified by match to protein family HMM PF00005
YP_948789.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR01728
YP_948790.1	converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines
YP_948791.1	identified by match to protein family HMM PF00009; match to protein family HMM TIGR02034
YP_948792.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_948793.1	identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434
YP_948796.1	identified by match to protein family HMM PF01903
YP_948797.1	identified by match to protein family HMM PF03458
YP_948800.1	identified by match to protein family HMM PF00348
YP_948801.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; match to protein family HMM TIGR02032
YP_948802.1	identified by match to protein family HMM PF01209; match to protein family HMM TIGR01934
YP_948803.1	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543
YP_948804.1	identified by match to protein family HMM PF00497
YP_948805.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_948806.1	identified by match to protein family HMM PF00005
YP_948808.1	identified by match to protein family HMM PF02776
YP_948810.1	identified by match to protein family HMM PF00665
YP_948811.1	identified by match to protein family HMM PF01527
YP_948812.1	identified by match to protein family HMM PF01527
YP_948813.1	identified by match to protein family HMM PF00665
YP_948814.1	identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409
YP_948815.1	identified by match to protein family HMM PF01188
YP_948818.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_948819.1	identified by match to protein family HMM PF00251
YP_948820.1	identified by match to protein family HMM PF00528
YP_948821.1	identified by match to protein family HMM PF00528
YP_948822.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409
YP_948823.1	identified by match to protein family HMM PF01569
YP_948825.1	identified by match to protein family HMM PF01757
YP_948826.1	identified by match to protein family HMM PF00082
YP_948827.1	identified by match to protein family HMM PF07690
YP_948828.1	identified by match to protein family HMM TIGR01167
YP_948831.1	identified by match to protein family HMM PF04230
YP_948832.1	identified by match to protein family HMM PF00395; match to protein family HMM PF07676
YP_948834.1	identified by match to protein family HMM PF05345
YP_948835.1	identified by match to protein family HMM PF04932
YP_948836.1	identified by match to protein family HMM PF00395
YP_948837.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_948839.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_948840.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_948842.1	identified by match to protein family HMM PF00395; match to protein family HMM PF00415
YP_948843.1	identified by match to protein family HMM PF00082; match to protein family HMM PF00395
YP_948844.1	identified by match to protein family HMM PF00395; match to protein family HMM PF00415
YP_948846.1	identified by match to protein family HMM PF07883
YP_948848.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_948850.1	identified by match to protein family HMM PF01638
YP_948852.1	identified by match to protein family HMM PF00665
YP_948853.1	identified by match to protein family HMM PF01527
YP_948854.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_948855.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_948856.1	identified by match to protein family HMM PF01037
YP_948857.1	identified by match to protein family HMM PF02698
YP_948858.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_948859.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_948860.1	identified by match to protein family HMM PF00908; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_948861.1	identified by match to protein family HMM PF02706
YP_948863.1	identified by match to protein family HMM PF00535
YP_948867.1	identified by match to protein family HMM PF00534
YP_948868.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025
YP_948869.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_948872.1	identified by match to protein family HMM PF00665
YP_948873.1	identified by similarity to SP:P24580; match to protein family HMM PF01527
YP_948875.1	identified by match to protein family HMM PF00561
YP_948876.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764
YP_948877.1	identified by match to protein family HMM PF00487
YP_948878.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_948880.1	identified by match to protein family HMM PF00498
YP_948881.1	identified by match to protein family HMM PF00905
YP_948896.1	identified by match to protein family HMM PF00583
YP_948898.1	identified by match to protein family HMM PF07081
YP_948900.1	identified by match to protein family HMM PF01839
YP_948901.1	identified by match to protein family HMM PF01047
YP_948902.1	identified by match to protein family HMM PF02696
YP_948906.1	identified by match to protein family HMM PF00082
YP_948907.1	identified by match to protein family HMM PF00395
YP_948909.1	identified by match to protein family HMM PF00395
YP_948911.1	identified by match to protein family HMM PF00395
YP_948913.1	identified by match to protein family HMM PF00395
YP_948915.1	identified by match to protein family HMM PF02839
YP_948918.1	identified by match to protein family HMM PF00378
YP_948919.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021; match to protein family HMM TIGR02160
YP_948920.1	identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159
YP_948921.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_948922.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_948923.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_948924.1	identified by match to protein family HMM PF01451
YP_948925.1	identified by match to protein family HMM PF01476
YP_948926.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_948927.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_948929.1	identified by match to protein family HMM PF04892
YP_948930.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_948931.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_948932.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_948935.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_948937.1	identified by match to protein family HMM PF07719
YP_948938.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_948939.1	identified by match to protein family HMM PF00583
YP_948940.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_948941.1	identified by match to protein family HMM TIGR02155
YP_948942.1	catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA
YP_948943.1	identified by match to protein family HMM PF00395
YP_948944.1	identified by match to protein family HMM PF00535
YP_948947.1	identified by match to protein family HMM PF01547
YP_948948.1	identified by match to protein family HMM PF00528
YP_948949.1	identified by match to protein family HMM PF00528
YP_948950.1	identified by match to protein family HMM PF06283
YP_948951.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_948954.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_948955.1	identified by match to protein family HMM PF00378
YP_948956.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_948959.1	identified by match to protein family HMM PF00324
YP_948960.1	identified by match to protein family HMM PF00355
YP_948961.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_948963.1	identified by match to protein family HMM PF00005
YP_948966.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_948967.1	identified by match to protein family HMM PF00005
YP_948968.1	identified by match to protein family HMM PF01297
YP_948969.1	identified by match to protein family HMM PF02517
YP_948971.1	identified by match to protein family HMM PF00378; match to protein family HMM TIGR01929
YP_948972.1	identified by match to protein family HMM PF00501
YP_948973.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_948977.1	identified by match to protein family HMM PF01926
YP_948980.1	identified by match to protein family HMM PF00196
YP_948981.1	identified by match to protein family HMM PF00012
YP_948982.1	identified by match to protein family HMM PF01578
YP_948983.1	identified by match to protein family HMM PF05140
YP_948984.1	identified by match to protein family HMM PF02683
YP_948985.1	identified by match to protein family HMM TIGR01409
YP_948986.1	identified by match to protein family HMM PF00300
YP_948987.1	identified by match to protein family HMM PF04264
YP_948990.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_948991.1	identified by match to protein family HMM PF05768
YP_948992.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_948994.1	identified by match to protein family HMM PF01527
YP_948995.1	identified by match to protein family HMM PF00665
YP_948998.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_948999.1	identified by match to protein family HMM PF05448
YP_949000.1	identified by match to protein family HMM PF01408
YP_949001.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_949003.1	identified by match to protein family HMM PF00528
YP_949004.1	identified by match to protein family HMM PF00528
YP_949005.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01409
YP_949006.1	identified by match to protein family HMM PF02449
YP_949007.1	identified by match to protein family HMM PF01547
YP_949008.1	identified by match to protein family HMM PF00528
YP_949009.1	identified by match to protein family HMM PF00528
YP_949011.1	identified by match to protein family HMM PF01408
YP_949013.1	identified by match to protein family HMM PF00171
YP_949014.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_949015.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_949016.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_949017.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_949018.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949019.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949020.1	identified by match to protein family HMM PF01070
YP_949021.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_949022.1	identified by match to protein family HMM PF01022
YP_949023.1	identified by match to protein family HMM PF00850
YP_949024.1	identified by match to protein family HMM PF02386
YP_949025.1	identified by match to protein family HMM PF02254
YP_949026.1	identified by match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00112
YP_949027.1	identified by match to protein family HMM PF01261
YP_949028.1	identified by match to protein family HMM PF02541
YP_949030.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01051
YP_949031.1	identified by match to protein family HMM PF01022
YP_949032.1	identified by match to protein family HMM PF05175
YP_949035.1	identified by match to protein family HMM PF00581
YP_949036.1	identified by match to protein family HMM PF00583
YP_949037.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_949039.1	identified by match to protein family HMM PF07811
YP_949041.1	identified by match to protein family HMM PF00482
YP_949042.1	identified by match to protein family HMM PF00437
YP_949044.1	identified by match to protein family HMM PF00476
YP_949046.1	identified by match to protein family HMM PF00293
YP_949047.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_949049.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188
YP_949050.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_949051.1	identified by match to protein family HMM PF00005
YP_949052.1	identified by match to protein family HMM PF02687
YP_949053.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949054.1	identified by match to protein family HMM PF01408
YP_949055.1	identified by match to protein family HMM PF00528
YP_949056.1	identified by match to protein family HMM PF00528
YP_949057.1	identified by match to protein family HMM PF01547
YP_949058.1	identified by match to protein family HMM PF02065
YP_949059.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_949060.1	identified by match to protein family HMM PF00089; match to protein family HMM PF02674
YP_949061.1	identified by match to protein family HMM PF00027
YP_949062.1	identified by match to protein family HMM PF00293
YP_949063.1	identified by match to protein family HMM PF01042
YP_949065.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_949066.1	identified by match to protein family HMM PF00149
YP_949067.1	identified by match to protein family HMM PF01047
YP_949068.1	identified by match to protein family HMM PF03176
YP_949070.1	identified by match to protein family HMM PF01494
YP_949071.1	identified by match to protein family HMM PF00702
YP_949073.1	identified by match to protein family HMM PF00248
YP_949074.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_949075.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_949077.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_949078.1	identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081
YP_949079.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_949080.1	identified by match to protein family HMM PF06089
YP_949082.1	identified by match to protein family HMM PF00375
YP_949083.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_949084.1	identified by match to protein family HMM PF01177
YP_949085.1	identified by match to protein family HMM PF02133
YP_949086.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_949088.1	identified by match to protein family HMM PF00583
YP_949089.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738
YP_949090.1	identified by match to protein family HMM PF00941
YP_949091.1	identified by match to protein family HMM PF02625
YP_949092.1	identified by match to protein family HMM PF00860
YP_949093.1	identified by match to protein family HMM PF00383
YP_949094.1	catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.
YP_949097.1	identified by match to protein family HMM PF01014
YP_949098.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_949100.1	identified by match to protein family HMM PF01614
YP_949101.1	identified by match to protein family HMM PF00390; match to protein family HMM PF01842; match to protein family HMM PF03949
YP_949102.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_949103.1	identified by similarity to GB:CAB95299.1
YP_949104.1	identified by match to protein family HMM PF05899; match to protein family HMM PF07883
YP_949107.1	identified by match to protein family HMM PF04978
YP_949108.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949110.1	identified by match to protein family HMM PF02518
YP_949111.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_949112.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_949113.1	identified by match to protein family HMM PF07690
YP_949114.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_949116.1	identified by match to protein family HMM PF00484; match to protein family HMM PF00860; match to protein family HMM PF00916
YP_949117.1	identified by match to protein family HMM PF01839
YP_949119.1	identified by match to protein family HMM PF02585; match to protein family HMM PF05401
YP_949120.1	identified by match to protein family HMM PF00535
YP_949121.1	identified by match to protein family HMM PF00406; match to protein family HMM TIGR01351
YP_949124.1	identified by match to protein family HMM PF01380
YP_949125.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949127.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_949128.1	identified by match to protein family HMM PF03364
YP_949129.1	identified by match to protein family HMM PF01839
YP_949130.1	identified by match to protein family HMM PF00005
YP_949131.1	identified by match to protein family HMM PF00528
YP_949132.1	identified by match to protein family HMM PF00528
YP_949133.1	identified by match to protein family HMM PF00496
YP_949136.1	identified by match to protein family HMM PF00581
YP_949137.1	identified by match to protein family HMM PF07690
YP_949138.1	identified by match to protein family HMM PF00296
YP_949139.1	identified by match to protein family HMM PF00528
YP_949140.1	identified by match to protein family HMM PF00005
YP_949141.1	identified by match to protein family HMM PF03180
YP_949143.1	identified by match to protein family HMM PF00583
YP_949145.1	identified by match to protein family HMM PF00535
YP_949147.1	identified by match to protein family HMM PF00293
YP_949151.1	identified by match to protein family HMM PF00561
YP_949156.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_949157.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_949158.1	identified by match to protein family HMM PF02525
YP_949159.1	identified by match to protein family HMM PF01638
YP_949160.1	identified by match to protein family HMM PF00561
YP_949161.1	identified by match to protein family HMM PF01928; match to protein family HMM PF05235
YP_949162.1	identified by match to protein family HMM PF03364
YP_949166.1	identified by match to protein family HMM PF01614
YP_949167.1	identified by match to protein family HMM PF02515
YP_949168.1	identified by match to protein family HMM PF00378
YP_949171.1	identified by match to protein family HMM PF00293
YP_949175.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_949179.1	identified by match to protein family HMM PF00005
YP_949180.1	identified by match to protein family HMM PF02163
YP_949186.1	identified by match to protein family HMM PF00202
YP_949190.1	identified by match to protein family HMM PF06283
YP_949191.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_949192.1	identified by match to protein family HMM PF00528
YP_949193.1	identified by match to protein family HMM PF00528
YP_949194.1	identified by match to protein family HMM PF01547
YP_949195.1	phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway
YP_949196.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949199.1	identified by match to protein family HMM PF01261
YP_949200.1	identified by match to protein family HMM PF02737; match to protein family HMM PF03446; match to protein family HMM PF03721; match to protein family HMM PF03807; match to protein family HMM TIGR01505
YP_949201.1	catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate
YP_949202.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_949203.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_949204.1	identified by match to protein family HMM PF00486
YP_949205.1	identified by match to protein family HMM PF00578
YP_949206.1	identified by match to protein family HMM PF00072; match to protein family HMM PF07228
YP_949207.1	identified by match to protein family HMM PF00535
YP_949208.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_949211.1	identified by match to protein family HMM PF00266
YP_949212.1	identified by match to protein family HMM PF07690
YP_949213.1	identified by match to protein family HMM PF01638
YP_949214.1	identified by match to protein family HMM PF01569
YP_949216.1	identified by match to protein family HMM PF00576
YP_949218.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_949219.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_949220.1	identified by match to protein family HMM PF00903
YP_949221.1	identified by match to protein family HMM PF00903
YP_949224.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_949225.1	identified by match to protein family HMM PF01243
YP_949226.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_949227.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; match to protein family HMM TIGR02141
YP_949228.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_949229.1	identified by match to protein family HMM PF00376
YP_949230.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_949232.1	identified by match to protein family HMM PF02012
YP_949233.1	identified by match to protein family HMM PF03733
YP_949235.1	identified by match to protein family HMM PF00697
YP_949236.1	identified by match to protein family HMM PF05962
YP_949237.1	identified by match to protein family HMM PF00893
YP_949238.1	identified by similarity to SP:P30743
YP_949239.1	identified by match to protein family HMM PF00248
YP_949240.1	identified by match to protein family HMM PF00753
YP_949241.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_949242.1	identified by match to protein family HMM PF07690
YP_949243.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01950
YP_949244.1	identified by match to protein family HMM PF03848; match to protein family HMM PF05175; match to protein family HMM PF05724
YP_949246.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_949247.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949248.1	identified by match to protein family HMM PF07690
YP_949250.1	identified by match to protein family HMM PF02390; match to protein family HMM TIGR00091
YP_949254.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_949255.1	identified by match to protein family HMM PF03640
YP_949258.1	identified by match to protein family HMM PF00005
YP_949259.1	identified by match to protein family HMM PF06182
YP_949260.1	identified by match to protein family HMM PF06182
YP_949262.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434
YP_949263.1	identified by match to protein family HMM PF07690
YP_949264.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949266.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_949267.1	identified by match to protein family HMM PF04371
YP_949272.1	identified by match to protein family HMM PF01614
YP_949273.1	identified by match to protein family HMM PF01614
YP_949274.1	identified by match to protein family HMM PF00107
YP_949275.1	identified by match to protein family HMM PF00456
YP_949276.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_949278.1	identified by match to protein family HMM PF00106
YP_949280.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949281.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_949282.1	identified by match to protein family HMM PF00376
YP_949283.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_949285.1	identified by match to protein family HMM PF05675
YP_949287.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368
YP_949288.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_949289.1	identified by match to protein family HMM PF00561
YP_949292.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_949294.1	identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409
YP_949295.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_949298.1	identified by match to protein family HMM PF04984
YP_949299.1	identified by match to protein family HMM TIGR02241
YP_949303.1	identified by match to protein family HMM PF04965
YP_949305.1	identified by match to protein family HMM TIGR02242
YP_949306.1	identified by match to protein family HMM PF03793
YP_949307.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_949309.1	identified by match to protein family HMM PF02368
YP_949312.1	identified by match to protein family HMM PF00440
YP_949313.1	identified by match to protein family HMM PF01810
YP_949314.1	identified by match to protein family HMM PF00171
YP_949315.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01842
YP_949316.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_949317.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_949318.1	identified by match to protein family HMM PF01451
YP_949319.1	identified by match to protein family HMM PF01451
YP_949320.1	identified by match to protein family HMM PF00230
YP_949322.1	identified by match to protein family HMM PF01022
YP_949323.1	identified by match to protein family HMM PF00583
YP_949324.1	identified by match to protein family HMM PF03176
YP_949325.1	identified by match to protein family HMM PF01047
YP_949326.1	identified by match to protein family HMM PF01209
YP_949327.1	identified by match to protein family HMM PF04946
YP_949328.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_949329.1	identified by match to protein family HMM PF00248
YP_949330.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_949331.1	identified by match to protein family HMM PF01810
YP_949333.1	identified by match to protein family HMM PF00532
YP_949334.1	identified by match to protein family HMM PF01156
YP_949335.1	identified by match to protein family HMM PF07690
YP_949336.1	identified by match to protein family HMM PF00294
YP_949338.1	identified by match to protein family HMM PF01451
YP_949339.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553
YP_949340.1	identified by match to protein family HMM PF00614
YP_949341.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_949342.1	identified by match to protein family HMM PF00324
YP_949343.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_949345.1	identified by match to protein family HMM PF00291
YP_949346.1	identified by match to protein family HMM PF00221
YP_949348.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_949351.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01325
YP_949353.1	ATP-dependent carboxylate-amine ligase
YP_949355.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_949356.1	identified by match to protein family HMM PF01804
YP_949358.1	identified by match to protein family HMM PF02361
YP_949359.1	identified by match to protein family HMM PF00005
YP_949361.1	identified by match to protein family HMM PF00293
YP_949363.1	identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300
YP_949364.1	identified by similarity to RF:ZP_00618213.1
YP_949365.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_949366.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_949367.1	identified by match to protein family HMM PF00420
YP_949368.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_949369.1	identified by match to protein family HMM PF07690
YP_949370.1	identified by match to protein family HMM PF02080
YP_949371.1	identified by match to protein family HMM PF00999
YP_949373.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_949374.1	identified by match to protein family HMM PF01839
YP_949376.1	identified by match to protein family HMM PF01839; match to protein family HMM PF02557
YP_949379.1	identified by match to protein family HMM PF01262
YP_949380.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_949381.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_949382.1	identified by match to protein family HMM PF00583
YP_949383.1	identified by match to protein family HMM PF01261
YP_949385.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949386.1	identified by match to protein family HMM PF06187
YP_949387.1	identified by match to protein family HMM PF01261
YP_949390.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_949391.1	identified by match to protein family HMM PF00480
YP_949392.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_949393.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_949394.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949395.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_949396.1	catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate
YP_949397.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_949398.1	identified by match to protein family HMM PF01263
YP_949399.1	identified by match to protein family HMM PF00532
YP_949400.1	identified by match to protein family HMM PF05336
YP_949401.1	identified by match to protein family HMM TIGR02635
YP_949402.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00596; match to protein family HMM TIGR02632
YP_949403.1	identified by match to protein family HMM PF00370
YP_949404.1	identified by match to protein family HMM PF01381
YP_949406.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_949407.1	identified by match to protein family HMM PF03547
YP_949408.1	identified by match to protein family HMM PF00723; match to protein family HMM TIGR00685
YP_949409.1	identified by match to protein family HMM PF00296
YP_949410.1	identified by match to protein family HMM PF00497
YP_949411.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_949412.1	identified by match to protein family HMM PF00583
YP_949413.1	identified by match to protein family HMM PF01839
YP_949417.1	identified by match to protein family HMM PF07920
YP_949418.1	identified by match to protein family HMM PF00296
YP_949419.1	identified by match to protein family HMM PF00497
YP_949420.1	identified by match to protein family HMM PF00005
YP_949421.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_949423.1	identified by match to protein family HMM PF00583
YP_949424.1	identified by match to protein family HMM PF05872
YP_949427.1	identified by match to protein family HMM PF01436
YP_949428.1	identified by match to protein family HMM PF05425
YP_949429.1	identified by match to protein family HMM PF00216
YP_949430.1	identified by match to protein family HMM PF00583
YP_949431.1	identified by match to protein family HMM PF01734
YP_949432.1	identified by match to protein family HMM PF00561
YP_949433.1	identified by match to protein family HMM PF00486; match to protein family HMM PF03704
YP_949434.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_949435.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_949436.1	required for 70S ribosome assembly
YP_949437.1	identified by match to protein family HMM PF00657
YP_949438.1	identified by match to protein family HMM PF01047
YP_949439.1	identified by match to protein family HMM PF03795
YP_949440.1	identified by match to protein family HMM PF00657
YP_949441.1	identified by match to protein family HMM PF00657
YP_949442.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_949443.1	identified by match to protein family HMM PF00005
YP_949444.1	identified by match to protein family HMM PF01032
YP_949445.1	identified by match to protein family HMM PF01032
YP_949446.1	identified by match to protein family HMM PF01497
YP_949452.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_949453.1	identified by match to protein family HMM PF02810
YP_949455.1	identified by match to protein family HMM PF01613
YP_949456.1	identified by match to protein family HMM PF00248
YP_949457.1	identified by match to protein family HMM PF00174; match to protein family HMM PF03404
YP_949458.1	identified by match to protein family HMM PF00248
YP_949460.1	identified by match to protein family HMM PF00106
YP_949461.1	identified by match to protein family HMM PF01596
YP_949465.1	identified by match to protein family HMM PF00491
YP_949467.1	identified by match to protein family HMM PF01479
YP_949472.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949473.1	identified by match to protein family HMM PF06089
YP_949474.1	identified by match to protein family HMM PF00206
YP_949475.1	identified by match to protein family HMM PF00324
YP_949476.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949477.1	identified by match to protein family HMM PF04909
YP_949478.1	identified by match to protein family HMM PF00248
YP_949479.1	identified by match to protein family HMM PF05336
YP_949480.1	identified by match to protein family HMM PF01120
YP_949481.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_949482.1	identified by match to protein family HMM PF01557
YP_949483.1	identified by match to protein family HMM PF00106
YP_949484.1	identified by match to protein family HMM PF01839
YP_949486.1	identified by match to protein family HMM PF00004; match to protein family HMM PF00583
YP_949487.1	identified by match to protein family HMM PF06772
YP_949489.1	identified by match to protein family HMM PF00440
YP_949490.1	identified by match to protein family HMM PF00144
YP_949491.1	identified by match to protein family HMM PF00749
YP_949493.1	identified by match to protein family HMM PF01037
YP_949494.1	identified by match to protein family HMM PF01037
YP_949495.1	identified by match to protein family HMM PF01810
YP_949497.1	identified by match to protein family HMM PF01022
YP_949500.1	identified by match to protein family HMM PF01614
YP_949501.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_949502.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949503.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949504.1	identified by match to protein family HMM PF00464
YP_949505.1	identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373
YP_949506.1	identified by match to protein family HMM PF04267; match to protein family HMM TIGR01374
YP_949507.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372
YP_949508.1	identified by match to protein family HMM PF04268
YP_949509.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_949510.1	identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655
YP_949511.1	identified by match to protein family HMM PF07905
YP_949512.1	identified by match to protein family HMM PF02133
YP_949513.1	identified by match to protein family HMM PF01522
YP_949515.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_949516.1	identified by match to protein family HMM PF01839
YP_949517.1	identified by match to protein family HMM PF01839
YP_949518.1	identified by match to protein family HMM PF01839
YP_949519.1	identified by match to protein family HMM PF07690
YP_949520.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_949521.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_949522.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879
YP_949523.1	identified by match to protein family HMM PF07690
YP_949524.1	identified by match to protein family HMM PF01047
YP_949525.1	identified by match to protein family HMM PF00583
YP_949526.1	identified by match to protein family HMM PF03551
YP_949528.1	identified by match to protein family HMM PF00005
YP_949529.1	identified by match to protein family HMM PF01061
YP_949530.1	identified by match to protein family HMM PF00324
YP_949531.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451
YP_949532.1	identified by match to protein family HMM PF00005
YP_949533.1	identified by match to protein family HMM PF01032
YP_949534.1	identified by match to protein family HMM PF01032
YP_949535.1	identified by match to protein family HMM PF01497
YP_949536.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_949537.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02302; match to protein family HMM PF02378; match to protein family HMM TIGR00851
YP_949538.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_949539.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_949540.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764
YP_949541.1	identified by match to protein family HMM TIGR03083
YP_949542.1	identified by match to protein family HMM PF00561
YP_949544.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth
YP_949547.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_949549.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_949550.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_949552.1	identified by match to protein family HMM PF00496
YP_949553.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_949554.1	identified by match to protein family HMM PF00528
YP_949555.1	identified by match to protein family HMM PF00528
YP_949556.1	identified by match to protein family HMM PF00440
YP_949557.1	identified by match to protein family HMM PF03358
YP_949562.1	identified by match to protein family HMM PF00155
YP_949563.1	identified by match to protein family HMM PF00582
YP_949565.1	identified by match to protein family HMM PF00324
YP_949566.1	identified by match to protein family HMM PF07969
YP_949568.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_949569.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_949570.1	identified by match to protein family HMM PF00676
YP_949571.1	identified by match to protein family HMM PF00155
YP_949572.1	identified by match to protein family HMM PF04020
YP_949574.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_949575.1	identified by match to protein family HMM PF00300
YP_949576.1	identified by match to protein family HMM PF00583
YP_949577.1	identified by match to protein family HMM PF03061
YP_949578.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949579.1	identified by match to protein family HMM PF02626
YP_949580.1	identified by match to protein family HMM PF02682
YP_949581.1	identified by match to protein family HMM PF03746
YP_949582.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_949584.1	identified by match to protein family HMM PF03737
YP_949585.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_949588.1	identified by match to protein family HMM PF03328
YP_949589.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_949590.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299
YP_949591.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949592.1	identified by match to protein family HMM PF01557; match to protein family HMM PF03737
YP_949596.1	identified by match to protein family HMM PF05532
YP_949599.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_949600.1	identified by match to protein family HMM PF00857
YP_949601.1	identified by match to protein family HMM PF00106
YP_949606.1	identified by match to protein family HMM PF03780
YP_949612.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_949615.1	identified by match to protein family HMM PF00532; match to protein family HMM PF08220
YP_949616.1	identified by match to protein family HMM PF01547
YP_949617.1	identified by match to protein family HMM PF00528
YP_949618.1	identified by match to protein family HMM PF00528
YP_949619.1	identified by match to protein family HMM PF02826
YP_949621.1	identified by match to protein family HMM PF07690
YP_949622.1	identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518
YP_949624.1	identified by match to protein family HMM PF01522
YP_949625.1	identified by match to protein family HMM PF00069
YP_949626.1	identified by match to protein family HMM PF02133
YP_949627.1	identified by match to protein family HMM PF00144
YP_949628.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_949629.1	identified by match to protein family HMM PF00561
YP_949630.1	identified by match to protein family HMM PF00300
YP_949632.1	identified by match to protein family HMM PF00440
YP_949633.1	identified by match to protein family HMM PF00324
YP_949634.1	identified by match to protein family HMM PF02535
YP_949636.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_949637.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_949638.1	identified by match to protein family HMM PF00892
YP_949639.1	identified by match to protein family HMM PF00701
YP_949640.1	identified by match to protein family HMM PF00107
YP_949641.1	identified by match to protein family HMM PF00723
YP_949642.1	identified by match to protein family HMM TIGR02271
YP_949643.1	identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788
YP_949644.1	identified by match to protein family HMM PF00310
YP_949645.1	identified by match to protein family HMM PF07690
YP_949646.1	identified by match to protein family HMM PF01381
YP_949648.1	identified by match to protein family HMM PF00903
YP_949649.1	identified by match to protein family HMM PF00376
YP_949651.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_949652.1	identified by match to protein family HMM PF01614
YP_949653.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949660.1	identified by match to protein family HMM PF01594
YP_949661.1	identified by match to protein family HMM PF00614
YP_949663.1	identified by match to protein family HMM PF00196
YP_949665.1	identified by match to protein family HMM PF00069
YP_949667.1	identified by match to protein family HMM PF01047
YP_949674.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_949675.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_949676.1	identified by match to protein family HMM PF00464
YP_949677.1	identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_949678.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_949679.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_949680.1	identified by match to protein family HMM PF07905
YP_949681.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_949682.1	identified by match to protein family HMM PF02133
YP_949683.1	identified by match to protein family HMM PF00171
YP_949684.1	identified by match to protein family HMM PF01565
YP_949685.1	identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220
YP_949687.1	identified by match to protein family HMM PF01872
YP_949690.1	identified by match to protein family HMM PF02233
YP_949691.1	identified by match to protein family HMM PF03358
YP_949692.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_949693.1	identified by match to protein family HMM PF03807
YP_949694.1	identified by match to protein family HMM PF00903
YP_949695.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_949698.1	identified by match to protein family HMM PF03061
YP_949699.1	identified by match to protein family HMM PF00501
YP_949700.1	identified by match to protein family HMM PF02551
YP_949701.1	identified by match to protein family HMM PF07883
YP_949702.1	identified by match to protein family HMM PF01557
YP_949703.1	identified by match to protein family HMM PF01042
YP_949705.1	identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431
YP_949706.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_949707.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_949708.1	identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930
YP_949709.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425
YP_949710.1	identified by match to protein family HMM PF00206
YP_949711.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_949712.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_949713.1	identified by match to protein family HMM PF01261
YP_949714.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_949715.1	identified by match to protein family HMM PF01614
YP_949716.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949717.1	identified by match to protein family HMM PF01839
YP_949719.1	identified by match to protein family HMM PF02597
YP_949720.1	identified by match to protein family HMM PF02012
YP_949721.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_949723.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_949726.1	identified by match to protein family HMM PF00582
YP_949727.1	identified by match to protein family HMM PF02447; match to protein family HMM TIGR00791
YP_949728.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_949729.1	identified by match to protein family HMM PF07908; match to protein family HMM PF07969
YP_949731.1	identified by match to protein family HMM PF00294
YP_949732.1	identified by match to protein family HMM PF01614
YP_949733.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_949734.1	identified by match to protein family HMM PF03547
YP_949736.1	identified by match to protein family HMM PF01370
YP_949737.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02455
YP_949738.1	identified by match to protein family HMM PF01476
YP_949739.1	identified by match to protein family HMM PF03976
YP_949741.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_949742.1	identified by match to protein family HMM PF07075; match to protein family HMM TIGR01409
YP_949743.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_949744.1	identified by match to protein family HMM PF02698
YP_949746.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_949747.1	identified by match to protein family HMM PF00528
YP_949748.1	identified by match to protein family HMM PF00528
YP_949749.1	identified by match to protein family HMM PF01547
YP_949750.1	identified by match to protein family HMM PF02449
YP_949753.1	identified by match to protein family HMM PF00165
YP_949756.1	identified by match to protein family HMM PF01614
YP_949757.1	identified by match to protein family HMM PF00728
YP_949758.1	identified by match to protein family HMM PF00528
YP_949759.1	identified by match to protein family HMM PF00528
YP_949760.1	identified by match to protein family HMM PF01547
YP_949761.1	identified by match to protein family HMM PF02583
YP_949762.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_949765.1	identified by match to protein family HMM PF00892
YP_949766.1	identified by match to protein family HMM PF07336
YP_949769.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_949771.1	identified by match to protein family HMM PF07681
YP_949772.1	identified by match to protein family HMM PF00391
YP_949774.1	identified by match to protein family HMM PF03061
YP_949775.1	identified by match to protein family HMM PF00196
YP_949777.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_949779.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321
YP_949780.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472
YP_949781.1	identified by match to protein family HMM PF00534
YP_949783.1	identified by similarity to SP:P0ACD3
YP_949787.1	identified by match to protein family HMM PF00534
YP_949788.1	identified by match to protein family HMM PF00534
YP_949789.1	identified by match to protein family HMM PF00534
YP_949791.1	identified by match to protein family HMM PF02706
YP_949792.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025
YP_949796.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_949797.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_949798.1	identified by match to protein family HMM PF00456
YP_949799.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_949801.1	identified by match to protein family HMM PF00106
YP_949802.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_949803.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR02133
YP_949806.1	identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665
YP_949809.1	identified by match to protein family HMM TIGR01409
YP_949811.1	identified by match to protein family HMM PF03358
YP_949812.1	identified by match to protein family HMM PF07859
YP_949813.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM PF06808
YP_949814.1	identified by match to protein family HMM PF02515
YP_949815.1	identified by match to protein family HMM PF00682
YP_949816.1	identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826
YP_949817.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_949821.1	identified by match to protein family HMM PF00781
YP_949824.1	identified by match to protein family HMM PF01614
YP_949825.1	identified by match to protein family HMM PF00005
YP_949827.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_949829.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_949830.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_949831.1	identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_949832.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_949833.1	identified by similarity to SP:P67147; match to protein family HMM PF02694
YP_949835.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_949836.1	catalyzes the removal of amino acids from the N termini of peptides
YP_949837.1	identified by match to protein family HMM PF00775
YP_949838.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_949839.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_949841.1	identified by match to protein family HMM PF00005
YP_949842.1	identified by match to protein family HMM PF00781; match to protein family HMM PF01569
YP_949843.1	identified by match to protein family HMM PF01569
YP_949844.1	identified by match to protein family HMM PF07690
YP_949845.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_949846.1	identified by match to protein family HMM PF00005
YP_949847.1	identified by match to protein family HMM PF00144
YP_949848.1	identified by match to protein family HMM PF00905; match to protein family HMM PF05223
YP_949849.1	identified by match to protein family HMM PF01055
YP_949850.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_949851.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_949852.1	identified by match to protein family HMM PF02687
YP_949853.1	identified by match to protein family HMM PF00005
YP_949854.1	identified by match to protein family HMM PF01638
YP_949856.1	identified by match to protein family HMM PF01266
YP_949859.1	identified by match to protein family HMM PF00300
YP_949860.1	identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR02692
YP_949861.1	identified by match to protein family HMM PF00293
YP_949862.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_949864.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_949868.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_949869.1	identified by match to protein family HMM PF01656
YP_949870.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_949871.1	identified by match to protein family HMM PF01424
YP_949872.1	identified by match to protein family HMM PF02096
YP_949873.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_949874.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_949875.1	identified by match to protein family HMM PF01656
YP_949876.1	identified by similarity to GB:CAE46815.1
YP_949882.1	identified by match to protein family HMM PF01022
YP_949888.1	identified by match to protein family HMM PF00437
YP_949892.1	identified by match to protein family HMM PF07811
YP_949893.1	identified by match to protein family HMM PF07811
YP_949895.1	identified by match to protein family HMM PF01476
YP_949902.1	identified by similarity to GB:CAD47984.1
YP_949904.1	identified by match to protein family HMM PF00583
YP_949905.1	identified by similarity to RF:NP_826790.1
YP_949908.1	identified by similarity to SP:P22885; match to protein family HMM PF00589
YP_949909.1	identified by match to protein family HMM PF01464
YP_949914.1	identified by similarity to PIR:A86909
YP_949919.1	identified by match to protein family HMM PF00589
YP_949920.1	identified by match to protein family HMM PF00589
YP_949921.1	identified by similarity to GB:AAO61163.1
YP_949922.1	identified by match to protein family HMM PF02633
YP_949925.1	identified by match to protein family HMM PF01695
YP_949926.1	identified by similarity to PIR:D70668; match to protein family HMM PF00665
YP_949928.1	identified by match to protein family HMM PF00561; match to protein family HMM PF06441
YP_949929.1	identified by match to protein family HMM PF07883
YP_949930.1	identified by match to protein family HMM PF00324
YP_949931.1	identified by match to protein family HMM PF00037
YP_949932.1	identified by match to protein family HMM PF00107
YP_949934.1	identified by match to protein family HMM PF00501
YP_949935.1	identified by similarity to SP:P80668; match to protein family HMM PF00171
YP_949936.1	identified by match to protein family HMM PF00117
YP_949937.1	identified by match to protein family HMM PF00171
YP_949938.1	identified by match to protein family HMM PF00106
YP_949939.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_949940.1	identified by match to protein family HMM PF00067
YP_949941.1	identified by similarity to SP:P29603
YP_949942.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_949943.1	identified by similarity to GB:CAC81335.1; match to protein family HMM PF00120
YP_949944.1	identified by match to protein family HMM PF01590
YP_949945.1	identified by match to protein family HMM PF01037
YP_949946.1	identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_949947.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_949948.1	identified by match to protein family HMM PF02467
YP_949952.1	identified by match to protein family HMM PF01751
YP_949955.1	identified by similarity to GB:AAS20181.1
YP_949958.1	identified by match to protein family HMM PF01751
YP_949960.1	identified by similarity to SP:P00644; match to protein family HMM PF00565
YP_949961.1	identified by similarity to GB:AAL39016.1; match to protein family HMM PF01979; match to protein family HMM PF07969
YP_949965.1	identified by match to protein family HMM PF01751
YP_949967.1	identified by match to protein family HMM PF01656
YP_949974.1	identified by match to protein family HMM PF00665
YP_949975.1	identified by match to protein family HMM PF01527
YP_949978.1	identified by match to protein family HMM PF01551
YP_949992.1	identified by match to protein family HMM PF05534
YP_949996.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_949997.1	identified by match to protein family HMM PF02371
YP_950001.1	identified by similarity to SP:P75757; match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_950002.1	identified by match to protein family HMM PF01022
YP_950003.1	identified by match to protein family HMM PF00403
YP_950004.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_950005.1	identified by match to protein family HMM PF04945
YP_950006.1	identified by match to protein family HMM PF02583
YP_950008.1	identified by match to protein family HMM PF03860
YP_950010.1	identified by match to protein family HMM PF00403
YP_950011.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_950013.1	identified by match to protein family HMM PF03713
YP_950014.1	identified by match to protein family HMM PF02012
YP_950015.1	identified by match to protein family HMM PF00583
YP_950016.1	identified by match to protein family HMM PF02683
YP_950021.1	identified by match to protein family HMM PF00877; match to protein family HMM PF01476
YP_950027.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733; match to protein family HMM TIGR02353
YP_950038.1	identified by match to protein family HMM PF03713
YP_950040.1	identified by similarity to SP:P77145; match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_950043.1	identified by match to protein family HMM TIGR01409
YP_950045.1	identified by match to protein family HMM PF01578
YP_950046.1	identified by match to protein family HMM PF05140
YP_950050.1	identified by match to protein family HMM PF01551
YP_950052.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409
YP_950054.1	identified by match to protein family HMM PF01522
YP_950059.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_950060.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_950061.1	identified by match to protein family HMM PF01022
YP_950062.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01978
YP_950063.1	identified by similarity to SP:P13512; match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_950064.1	identified by match to protein family HMM PF01323
YP_950066.1	identified by match to protein family HMM PF05425
YP_950068.1	identified by match to protein family HMM PF04234
YP_950069.1	identified by match to protein family HMM PF02683
YP_950071.1	identified by match to protein family HMM PF07884
YP_950072.1	identified by match to protein family HMM PF02535
YP_950074.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_950076.1	identified by match to protein family HMM PF00892
YP_950079.1	identified by match to protein family HMM PF00440
YP_950081.1	identified by match to protein family HMM PF01609
YP_950082.1	identified by match to protein family HMM PF03600
YP_950083.1	identified by match to protein family HMM PF01609
YP_950084.1	identified by similarity to GB:AAS20048.1; match to protein family HMM PF01979; match to protein family HMM PF07969
YP_950085.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_950086.1	identified by similarity to SP:P77221; match to protein family HMM PF06545
YP_950087.1	identified by similarity to GB:AAS20043.1; match to protein family HMM PF01979
YP_950088.1	identified by match to protein family HMM PF00440
YP_950090.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_950092.1	identified by match to protein family HMM PF04986
YP_950093.1	identified by match to protein family HMM PF01526
YP_950094.1	identified by match to protein family HMM PF00239
YP_950095.1	identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544
YP_950097.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_950099.1	identified by match to protein family HMM PF00753
YP_950101.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_950102.1	identified by match to protein family HMM PF00581
YP_950103.1	identified by match to protein family HMM PF00581
YP_950104.1	identified by match to protein family HMM PF01925
YP_950105.1	identified by match to protein family HMM PF00581
YP_950106.1	identified by match to protein family HMM PF02583
YP_950107.1	identified by match to protein family HMM PF03625
YP_950109.1	identified by similarity to SP:P22853; match to protein family HMM PF00376
YP_950110.1	identified by similarity to GB:AAS20018.1; match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053
YP_950111.1	identified by match to protein family HMM PF00239
YP_950112.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_950113.1	identified by match to protein family HMM PF06189
YP_950116.1	identified by match to protein family HMM PF00005
YP_950117.1	identified by match to protein family HMM PF00528
YP_950118.1	identified by match to protein family HMM PF00528
YP_950119.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_950120.1	identified by match to protein family HMM PF04166
YP_950121.1	identified by similarity to GB:AAD20005.1; match to protein family HMM PF00866
YP_950122.1	identified by similarity to GB:AAD20006.1; match to protein family HMM PF00355; match to protein family HMM PF00848
YP_950123.1	identified by match to protein family HMM PF01614
YP_950124.1	identified by match to protein family HMM PF01425
YP_950130.1	identified by match to protein family HMM PF01527
YP_950131.1	identified by match to protein family HMM PF00665
YP_950132.1	identified by match to protein family HMM PF00004
YP_950133.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_950134.1	identified by similarity to SP:P24094
YP_950135.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_950136.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_950137.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_950139.1	identified by match to protein family HMM PF03741
YP_950140.1	identified by match to protein family HMM PF03741
YP_950145.1	identified by match to protein family HMM PF00665
YP_950146.1	identified by similarity to GB:BAD60591.1
YP_950147.1	identified by similarity to GB:BAD60590.1
YP_950154.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_950156.1	identified by match to protein family HMM PF06666
YP_950158.1	identified by match to protein family HMM PF00271
YP_950165.1	identified by match to protein family HMM PF01381
YP_950166.1	identified by match to protein family HMM PF07804; match to protein family HMM PF07805
YP_950167.1	identified by match to protein family HMM PF01656
YP_950168.1	identified by similarity to GB:BAD60633.1; match to protein family HMM PF00271
YP_950174.1	identified by match to protein family HMM PF00239
YP_950181.1	identified by match to protein family HMM PF00440
YP_950189.1	identified by match to protein family HMM PF03860
YP_950190.1	identified by match to protein family HMM PF02012
YP_950191.1	identified by match to protein family HMM PF03713
YP_950193.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_950195.1	identified by match to protein family HMM PF01022
YP_950196.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_950197.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_950198.1	identified by match to protein family HMM PF02683
YP_950200.1	identified by match to protein family HMM PF07884
YP_950201.1	identified by match to protein family HMM PF01551
YP_950204.1	identified by match to protein family HMM PF05140
YP_950206.1	identified by match to protein family HMM PF01022
YP_950207.1	identified by match to protein family HMM PF05425
YP_950208.1	identified by match to protein family HMM PF01022
YP_950209.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_950210.1	identified by match to protein family HMM PF01323
YP_950212.1	identified by match to protein family HMM PF04234
YP_950214.1	identified by match to protein family HMM PF01325; match to protein family HMM PF02742; match to protein family HMM PF04023
YP_950215.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_950216.1	identified by match to protein family HMM PF01758
YP_950217.1	identified by match to protein family HMM PF07690
YP_950218.1	identified by match to protein family HMM PF01022
YP_950219.1	identified by match to protein family HMM PF00583
YP_950220.1	identified by match to protein family HMM PF01022
YP_950221.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01451
YP_950222.1	identified by similarity to SP:Q01257; match to protein family HMM PF01451
YP_950223.1	identified by similarity to SP:P52215; match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_950224.1	identified by match to protein family HMM PF01266
YP_950225.1	identified by similarity to SP:P45947; match to protein family HMM PF01451
YP_950226.1	identified by similarity to SP:P45947; match to protein family HMM PF01451
YP_950232.1	identified by match to protein family HMM PF02371
YP_950233.1	identified by match to protein family HMM PF02195
YP_950235.1	identified by similarity to GB:CAA70763.1; match to protein family HMM PF00462
YP_950237.1	identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621
YP_950245.1	catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine
YP_950246.1	identified by match to protein family HMM PF00440
YP_950247.1	identified by match to protein family HMM PF07690
YP_950248.1	identified by match to protein family HMM PF07969
YP_950250.1	identified by match to protein family HMM PF00324
YP_950251.1	catalyzes the formation of catechol from phenol
YP_950252.1	identified by match to protein family HMM PF01557; match to protein family HMM PF03737
YP_950253.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_950254.1	identified by similarity to GB:BAC14825.1; match to protein family HMM PF00171; match to protein family HMM TIGR02299
YP_950255.1	identified by match to protein family HMM PF01689
YP_950256.1	identified by match to protein family HMM PF03328
YP_950257.1	identified by match to protein family HMM PF00171
YP_950258.1	identified by match to protein family HMM PF00171
YP_950259.1	identified by match to protein family HMM PF00106
YP_950260.1	identified by match to protein family HMM PF00324
YP_950261.1	identified by match to protein family HMM PF01636
YP_950262.1	identified by match to protein family HMM PF00440
YP_950263.1	identified by match to protein family HMM PF00202
YP_950264.1	identified by match to protein family HMM PF00171
YP_950265.1	identified by match to protein family HMM PF00165
YP_950267.1	identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118
YP_950269.1	identified by match to protein family HMM PF01614
YP_950270.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_950271.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_950272.1	identified by match to protein family HMM PF03737
YP_950273.1	identified by match to protein family HMM PF00857
YP_950274.1	identified by match to protein family HMM PF00296
YP_950275.1	identified by match to protein family HMM PF07336
YP_950276.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_950279.1	identified by match to protein family HMM PF07929
YP_950281.1	identified by match to protein family HMM PF00324
YP_950282.1	identified by similarity to GB:BAA94833.1; match to protein family HMM PF08028
YP_950283.1	identified by match to protein family HMM PF07859
YP_950284.1	identified by match to protein family HMM PF01613
YP_950285.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_950288.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_950290.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_950291.1	identified by match to protein family HMM PF01547
YP_950292.1	identified by match to protein family HMM PF00528
YP_950293.1	identified by match to protein family HMM PF00528
YP_950294.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_950295.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_950297.1	identified by match to protein family HMM PF01022
YP_950300.1	identified by match to protein family HMM PF00300
YP_950303.1	identified by similarity to GB:BAA12062.1
YP_950304.1	identified by match to protein family HMM PF02979; match to protein family HMM TIGR01323
YP_950305.1	identified by match to protein family HMM PF02211
YP_950306.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_950307.1	identified by similarity to SP:P27142; match to protein family HMM PF00406; match to protein family HMM TIGR01351
YP_950308.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_950309.1	identified by match to protein family HMM TIGR02317
YP_950310.1	identified by match to protein family HMM PF03972
YP_950311.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_950312.1	identified by similarity to SP:P55912; match to protein family HMM PF00501
YP_950313.1	identified by match to protein family HMM PF07690
YP_950314.1	identified by similarity to GB:AAC38196.1; match to protein family HMM PF00933; match to protein family HMM PF01915
YP_950315.1	identified by match to protein family HMM PF00440
YP_950316.1	identified by match to protein family HMM PF01243
YP_950318.1	identified by match to protein family HMM PF02656
YP_950321.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_950322.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_950324.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02558; match to protein family HMM PF03807
YP_950328.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_950329.1	identified by match to protein family HMM PF00557
YP_950330.1	identified by match to protein family HMM PF02633
YP_950331.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_950332.1	identified by match to protein family HMM PF00291
YP_950333.1	identified by match to protein family HMM PF01042
YP_950334.1	identified by match to protein family HMM PF07992
YP_950335.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_950336.1	identified by match to protein family HMM PF01925
YP_950339.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188
YP_950341.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908
YP_950342.1	catalyzes the formation of phenylacetaldehyde from 2-phenylethylamine
YP_950343.1	identified by match to protein family HMM PF00665
YP_950344.1	identified by match to protein family HMM PF01527
YP_950346.1	identified by match to protein family HMM PF00171
YP_950347.1	identified by match to protein family HMM PF00324
YP_950348.1	identified by match to protein family HMM PF01614
YP_950350.1	identified by match to protein family HMM PF00857
YP_950351.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_950352.1	identified by match to protein family HMM PF01037
YP_950353.1	identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_950354.1	identified by match to protein family HMM PF04213
YP_950355.1	identified by match to protein family HMM PF00117
YP_950356.1	identified by match to protein family HMM PF01590
YP_950357.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_950359.1	identified by match to protein family HMM PF00067
YP_950360.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_950361.1	identified by match to protein family HMM PF00106
YP_950362.1	identified by match to protein family HMM PF00120
YP_950363.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667
YP_950364.1	identified by match to protein family HMM PF00171
YP_950365.1	identified by match to protein family HMM PF00324
YP_950366.1	identified by match to protein family HMM PF00202
YP_950367.1	identified by match to protein family HMM PF00107
YP_950368.1	identified by match to protein family HMM PF00171
YP_950369.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_950370.1	identified by match to protein family HMM PF01638
YP_950373.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_950374.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_950375.1	identified by match to protein family HMM PF00483
YP_950377.1	identified by match to protein family HMM PF00534
YP_950379.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_950384.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_950385.1	identified by similarity to SP:P37979; match to protein family HMM PF07228
YP_950390.1	identified by match to protein family HMM PF01590; match to protein family HMM PF03861
YP_950391.1	identified by match to protein family HMM PF01047
YP_950392.1	identified by match to protein family HMM PF00294
YP_950401.1	identified by match to protein family HMM PF00589
YP_950402.1	identified by match to protein family HMM PF06250
YP_950403.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_950404.1	identified by match to protein family HMM PF06250
YP_950405.1	identified by match to protein family HMM PF00089
YP_950413.1	identified by similarity to GB:CAD47988.1
YP_950416.1	identified by match to protein family HMM PF05257