-- dump date 20120504_133456 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 521095000001 SEQ_END SEQ_END NC_013203.1 1543805 1543805 DR NC_013203.1; contig end 1543805..1543805 Atopobium parvulum DSM 20469 YP_003179032.1 CDS Apar_0001 NC_013203.1 250 1116 D PFAM: ATP-binding region ATPase domain protein; KEGG: rpb:RPB_3269 periplasmic sensor hybrid histidine kinase; ATPase domain-containing protein 250..1116 Atopobium parvulum DSM 20469 8414261 YP_003179033.1 CDS Apar_0002 NC_013203.1 1200 2729 D KEGG: wol:WD0001 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 1200..2729 Atopobium parvulum DSM 20469 8412840 YP_003179034.1 CDS Apar_0003 NC_013203.1 2964 4064 D KEGG: gur:Gura_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 2964..4064 Atopobium parvulum DSM 20469 8412841 YP_003179035.1 CDS Apar_0004 NC_013203.1 4080 5171 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bba:Bd0003 DNA repair and genetic recombination protein; DNA replication and repair protein RecF 4080..5171 Atopobium parvulum DSM 20469 8412842 YP_003179036.1 CDS Apar_0005 NC_013203.1 5164 5697 D hypothetical protein 5164..5697 Atopobium parvulum DSM 20469 8412843 YP_003179037.1 CDS Apar_0006 NC_013203.1 5858 7801 D KEGG: bsu:BSU00060 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 5858..7801 Atopobium parvulum DSM 20469 8412844 YP_003179038.1 CDS Apar_0007 NC_013203.1 7921 10626 D KEGG: gbm:Gbem_0005 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; Bombesin family protein; DNA gyrase repeat beta- propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 7921..10626 Atopobium parvulum DSM 20469 8412845 YP_003179039.1 CDS Apar_0008 NC_013203.1 10804 11310 R PFAM: protein of unknown function DUF151; KEGG: sat:SYN_02150 putative cytoplasmic protein; hypothetical protein complement(10804..11310) Atopobium parvulum DSM 20469 8412846 YP_003179040.1 CDS Apar_0009 NC_013203.1 11891 13030 D PFAM: extracellular solute-binding protein family 1; KEGG: msu:MS1583 TbpA protein; family 1 extracellular solute-binding protein 11891..13030 Atopobium parvulum DSM 20469 8412849 YP_003179041.1 CDS Apar_0010 NC_013203.1 13169 14878 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: msu:MS1586 ThiP protein; binding-protein-dependent transport system inner membrane protein 13169..14878 Atopobium parvulum DSM 20469 8412850 YP_003179042.1 CDS Apar_0011 NC_013203.1 14882 15961 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sfu:Sfum_3496 ABC transporter related; ABC transporter-like protein 14882..15961 Atopobium parvulum DSM 20469 8412851 YP_003179043.1 CDS Apar_0012 NC_013203.1 16020 17018 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: pat:Patl_0292 LacI family transcription regulator; LacI family transcriptional regulator complement(16020..17018) Atopobium parvulum DSM 20469 8412852 YP_003179044.1 CDS Apar_0014 NC_013203.1 18834 20114 D KEGG: asu:Asuc_0588 hypothetical protein; hypothetical protein 18834..20114 Atopobium parvulum DSM 20469 8412854 YP_003179045.1 CDS Apar_0015 NC_013203.1 20261 20719 D hypothetical protein 20261..20719 Atopobium parvulum DSM 20469 8412855 YP_003179046.1 CDS Apar_0016 NC_013203.1 20848 22686 D TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sat:SYN_00939 GTP-binding protein TypA/BipA; GTP-binding protein TypA 20848..22686 Atopobium parvulum DSM 20469 8412856 YP_003179047.1 CDS Apar_0017 NC_013203.1 22832 23575 R PFAM: protein of unknown function UPF0126; KEGG: ecq:ECED1_0164 conserved hypothetical protein; putative inner membrane protein; hypothetical protein complement(22832..23575) Atopobium parvulum DSM 20469 8412857 YP_003179048.1 CDS Apar_0018 NC_013203.1 24040 25455 D KEGG: hypothetical protein; hypothetical protein 24040..25455 Atopobium parvulum DSM 20469 8412860 YP_003179049.1 CDS Apar_0019 NC_013203.1 25759 26052 D TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: bcr:BCAH187_A5662 ribosomal protein S6; 30S ribosomal protein S6 25759..26052 Atopobium parvulum DSM 20469 8412861 YP_003179050.1 CDS Apar_0020 NC_013203.1 26105 26557 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: nis:NIS_1165 single-strand DNA binding protein; single-strand binding protein 26105..26557 Atopobium parvulum DSM 20469 8412862 YP_003179051.1 CDS Apar_0021 NC_013203.1 26606 26878 D TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: sat:SYN_00643 SSU ribosomal protein S18P; 30S ribosomal protein S18 26606..26878 Atopobium parvulum DSM 20469 8412863 YP_003179052.1 CDS Apar_0022 NC_013203.1 26911 27969 D KEGG: dol:Dole_0008 hypothetical protein; hypothetical protein 26911..27969 Atopobium parvulum DSM 20469 8412864 YP_003179053.1 CDS Apar_0023 NC_013203.1 28002 28526 D TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: dds:Ddes_2022 ribosomal protein L9; 50S ribosomal protein L9 28002..28526 Atopobium parvulum DSM 20469 8412865 YP_003179054.1 CDS Apar_0024 NC_013203.1 29027 30466 D KEGG: dvm:DvMF_1353 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 29027..30466 Atopobium parvulum DSM 20469 8412866 YP_003179055.1 CDS Apar_0025 NC_013203.1 30608 31888 D KEGG: gsu:GSU3308 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase 30608..31888 Atopobium parvulum DSM 20469 8412867 YP_003179056.1 CDS Apar_0026 NC_013203.1 31892 34006 D TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: glo:Glov_2759 phosphoribosylamine/glycine ligase; phosphoribosylamine/glycine ligase 31892..34006 Atopobium parvulum DSM 20469 8412868 YP_003179057.1 CDS Apar_0027 NC_013203.1 34022 34867 D PFAM: NUDIX hydrolase; KEGG: bha:BH1524 hypothetical protein; NUDIX hydrolase 34022..34867 Atopobium parvulum DSM 20469 8412869 YP_003179058.1 CDS Apar_0028 NC_013203.1 34874 36721 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bha:BH3891 ABC transporter ATP-binding protein; ABC transporter-like protein 34874..36721 Atopobium parvulum DSM 20469 8412870 YP_003179059.1 CDS Apar_0029 NC_013203.1 36912 37847 D KEGG: GE20196 gene product from transcript GE20196- RA; hypothetical protein 36912..37847 Atopobium parvulum DSM 20469 8412871 YP_003179060.1 CDS Apar_0030 NC_013203.1 37975 38844 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cco:CCC13826_1956 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1 complement(37975..38844) Atopobium parvulum DSM 20469 8412872 YP_003179061.1 CDS Apar_0031 NC_013203.1 38961 39422 D KEGG: hypothetical protein; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 38961..39422 Atopobium parvulum DSM 20469 8412873 YP_003179062.1 CDS Apar_0032 NC_013203.1 39656 40579 D TIGRFAM: sortase, SrtB family; PFAM: peptidase C60 sortase A and B; KEGG: bcz:BCZK4288 surface protein cell wall anchor; sortase 39656..40579 Atopobium parvulum DSM 20469 8412874 YP_003179063.1 CDS Apar_0033 NC_013203.1 40777 42270 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: ank:AnaeK_4338 amidophosphoribosyltransferase; amidophosphoribosyltransferase 40777..42270 Atopobium parvulum DSM 20469 8412875 YP_003179064.1 CDS Apar_0034 NC_013203.1 42281 43369 D KEGG: prw:PsycPRwf_1440 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 42281..43369 Atopobium parvulum DSM 20469 8412876 YP_003179065.1 CDS Apar_0035 NC_013203.1 43359 43973 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: phosphoribosylglycinamide formyltransferase ; K11175 phosphoribosylglycinamide formyltransferase 1; phosphoribosylglycinamide formyltransferase 43359..43973 Atopobium parvulum DSM 20469 8412877 YP_003179066.1 CDS Apar_0036 NC_013203.1 43974 45050 D PFAM: acyltransferase 3; KEGG: psa:PST_4158 sugar acetylase; acyltransferase 3 43974..45050 Atopobium parvulum DSM 20469 8412878 YP_003179067.1 CDS Apar_0037 NC_013203.1 45198 45416 R hypothetical protein complement(45198..45416) Atopobium parvulum DSM 20469 8412879 YP_003179068.1 CDS Apar_0039 NC_013203.1 45727 46251 R hypothetical protein complement(45727..46251) Atopobium parvulum DSM 20469 8412881 YP_003179069.1 CDS Apar_0041 NC_013203.1 46515 47288 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_0989 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(46515..47288) Atopobium parvulum DSM 20469 8412883 YP_003179070.1 CDS Apar_0042 NC_013203.1 47776 48399 D PFAM: protein of unknown function DUF47; KEGG: gsu:GSU0388 hypothetical protein; hypothetical protein 47776..48399 Atopobium parvulum DSM 20469 8412884 YP_003179071.1 CDS Apar_0043 NC_013203.1 48392 49387 D PFAM: phosphate transporter; KEGG: glo:Glov_0587 phosphate transporter; phosphate transporter 48392..49387 Atopobium parvulum DSM 20469 8412885 YP_003179072.1 CDS Apar_0044 NC_013203.1 49402 50064 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dps:DP1932 rRNA methylase homolog (CspR); tRNA/rRNA methyltransferase SpoU 49402..50064 Atopobium parvulum DSM 20469 8412886 YP_003179073.1 CDS Apar_0045 NC_013203.1 50207 50470 R KEGG: aci:ACIAD0111 hypothetical protein; hypothetical protein complement(50207..50470) Atopobium parvulum DSM 20469 8412887 YP_003179074.1 CDS Apar_0046 NC_013203.1 50610 51242 R KEGG: hhe:HH1060 hypothetical protein; hypothetical protein complement(50610..51242) Atopobium parvulum DSM 20469 8412888 YP_003179075.1 CDS Apar_0047 NC_013203.1 51279 51773 R PFAM: histidine triad (HIT) protein; KEGG: pfl:PFL_2782 hypothetical protein; histidine triad (HIT) protein complement(51279..51773) Atopobium parvulum DSM 20469 8412889 YP_003179076.1 CDS Apar_0048 NC_013203.1 51827 52816 R PFAM: Abortive infection protein; KEGG: bcr:BCAH187_A2522 CAAX amino terminal protease family protein; abortive infection protein complement(51827..52816) Atopobium parvulum DSM 20469 8412890 YP_003179077.1 CDS Apar_0049 NC_013203.1 52906 53514 R KEGG: scl:sce0203 hypothetical protein; hypothetical protein complement(52906..53514) Atopobium parvulum DSM 20469 8412891 YP_003179078.1 CDS Apar_0050 NC_013203.1 53595 54350 R KEGG: bar:GBAA1914 hypothetical protein; hypothetical protein complement(53595..54350) Atopobium parvulum DSM 20469 8412892 YP_003179079.1 CDS Apar_0051 NC_013203.1 54520 55026 R hypothetical protein complement(54520..55026) Atopobium parvulum DSM 20469 8412893 YP_003179080.1 CDS Apar_0053 NC_013203.1 55616 56863 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; KEGG: bha:BH0687 RNA methyltransferase; TrmA family RNA methyltransferase complement(55616..56863) Atopobium parvulum DSM 20469 8412895 YP_003179081.1 CDS Apar_0054 NC_013203.1 57034 58002 D PFAM: Lactate/malate dehydrogenase; KEGG: ent:Ent638_2002 malate dehydrogenase (NAD); lactate/malate dehydrogenase 57034..58002 Atopobium parvulum DSM 20469 8412896 YP_003179082.1 CDS Apar_0055 NC_013203.1 58519 59505 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: nar:Saro_3197 band 7 protein; hypothetical protein 58519..59505 Atopobium parvulum DSM 20469 8412897 YP_003179083.1 CDS Apar_0056 NC_013203.1 59523 59723 D KEGG: xac:XAC1234 hypothetical protein; hypothetical protein 59523..59723 Atopobium parvulum DSM 20469 8412898 YP_003179084.1 CDS Apar_0057 NC_013203.1 59725 60969 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcz:BCZK4584 ABC transporter, ATP-binding protein; ABC transporter-like protein 59725..60969 Atopobium parvulum DSM 20469 8412899 YP_003179085.1 CDS Apar_0058 NC_013203.1 60972 62816 D KEGG: bcz:BCZK4583 permease; hypothetical protein 60972..62816 Atopobium parvulum DSM 20469 8412900 YP_003179086.1 CDS Apar_0059 NC_013203.1 63091 65166 D TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: sfu:Sfum_0068 elongation factor G; small GTP-binding protein 63091..65166 Atopobium parvulum DSM 20469 8412901 YP_003179087.1 CDS Apar_0060 NC_013203.1 65966 67723 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: glo:Glov_2235 deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 65966..67723 Atopobium parvulum DSM 20469 8412902 YP_003179088.1 CDS Apar_0061 NC_013203.1 67997 69091 R PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: plu:plu4115 glycerol dehydrogenase; iron-containing alcohol dehydrogenase complement(67997..69091) Atopobium parvulum DSM 20469 8412903 YP_003179089.1 CDS Apar_0062 NC_013203.1 69295 70617 D KEGG: gsu:GSU0185 hypothetical protein; hypothetical protein 69295..70617 Atopobium parvulum DSM 20469 8412904 YP_003179090.1 CDS Apar_0063 NC_013203.1 70763 71965 D PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dal:Dalk_2373 beta-lactamase domain protein; beta-lactamase domain-containing protein 70763..71965 Atopobium parvulum DSM 20469 8412905 YP_003179091.1 CDS Apar_0064 NC_013203.1 72773 74116 D PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; KEGG: glo:Glov_2611 protein of unknown function DUF21; hypothetical protein 72773..74116 Atopobium parvulum DSM 20469 8412906 YP_003179092.1 CDS Apar_0065 NC_013203.1 74163 75017 D KEGG: hypothetical protein; hypothetical protein 74163..75017 Atopobium parvulum DSM 20469 8412907 YP_003179093.1 CDS Apar_0066 NC_013203.1 75075 75536 D KEGG: afr:AFE_2325 hypothetical protein; hypothetical protein 75075..75536 Atopobium parvulum DSM 20469 8412908 YP_003179094.1 CDS Apar_0067 NC_013203.1 75602 76576 D KEGG: smt:Smal_0268 hypothetical protein; hypothetical protein 75602..76576 Atopobium parvulum DSM 20469 8412909 YP_003179095.1 CDS Apar_0068 NC_013203.1 76677 78035 R PFAM: natural resistance-associated macrophage protein; KEGG: gbm:Gbem_3239 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(76677..78035) Atopobium parvulum DSM 20469 8412910 YP_003179096.1 CDS Apar_0069 NC_013203.1 78047 79924 R PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region; MgtE integral membrane protein complement(78047..79924) Atopobium parvulum DSM 20469 8412911 YP_003179097.1 CDS Apar_0070 NC_013203.1 80378 80923 R PFAM: LemA family protein; KEGG: sus:Acid_0971 LemA family protein; LemA family protein complement(80378..80923) Atopobium parvulum DSM 20469 8412912 YP_003179098.1 CDS Apar_0071 NC_013203.1 81481 81981 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pne:Pnec_0542 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase 81481..81981 Atopobium parvulum DSM 20469 8412914 YP_003179099.1 CDS Apar_0072 NC_013203.1 81984 83303 R KEGG: glo:Glov_1090 protein of unknown function Met10; SAM-dependent methyltransferase complement(81984..83303) Atopobium parvulum DSM 20469 8412915 YP_003179100.1 CDS Apar_0073 NC_013203.1 83388 83768 R PFAM: protein of unknown function DUF1304; KEGG: bba:Bd2510 transmembrane protein; hypothetical protein complement(83388..83768) Atopobium parvulum DSM 20469 8412916 YP_003179101.1 CDS Apar_0074 NC_013203.1 83810 85162 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ade:Adeh_2955 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase complement(83810..85162) Atopobium parvulum DSM 20469 8412917 YP_003179102.1 CDS Apar_0075 NC_013203.1 85209 86192 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 85209..86192 Atopobium parvulum DSM 20469 8412918 YP_003179103.1 CDS Apar_0076 NC_013203.1 86322 86882 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: swd:Swoo_0963 phosphodiesterase; phosphodiesterase 86322..86882 Atopobium parvulum DSM 20469 8412919 YP_003179104.1 CDS Apar_0077 NC_013203.1 87003 87722 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bsu:BSU05850 hypothetical protein; GntR family transcriptional regulator complement(87003..87722) Atopobium parvulum DSM 20469 8412920 YP_003179105.1 CDS Apar_0078 NC_013203.1 87861 89258 D PFAM: glycoside hydrolase family 1; KEGG: bha:BH3918 beta-glucosidase; glycoside hydrolase family protein 87861..89258 Atopobium parvulum DSM 20469 8412921 YP_003179106.1 CDS Apar_0079 NC_013203.1 89282 90721 D TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: ent:Ent638_1308 PTS system lactose/cellobiose family IIC subunit; PTS system lactose/cellobiose family transporter subunit IIC 89282..90721 Atopobium parvulum DSM 20469 8412922 YP_003179107.1 CDS Apar_0080 NC_013203.1 90798 91094 D PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: plu:plu2754 PTS system, cellobiose-specific IIB component; PTS system lactose/cellobiose-specific transporter subunit IIB 90798..91094 Atopobium parvulum DSM 20469 8412923 YP_003179108.1 CDS Apar_0081 NC_013203.1 91150 91485 D PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: bcy:Bcer98_3752 phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; PTS system lactose/cellobiose-specific transporter subunit IIA 91150..91485 Atopobium parvulum DSM 20469 8412924 YP_003179109.1 CDS Apar_0082 NC_013203.1 91647 93119 R KEGG: bmv:BMASAVP1_0601 hypothetical protein; hypothetical protein complement(91647..93119) Atopobium parvulum DSM 20469 8412925 YP_003179110.1 CDS Apar_0083 NC_013203.1 93207 93344 D hypothetical protein 93207..93344 Atopobium parvulum DSM 20469 8412926 YP_003179111.1 CDS Apar_0084 NC_013203.1 93286 94287 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(93286..94287) Atopobium parvulum DSM 20469 8412927 YP_003179112.1 CDS Apar_0085 NC_013203.1 94610 95041 D PFAM: Ferritin Dps family protein; KEGG: hhe:HH0210 starvation-inducible DNA-binding protein Dps; ferritin Dps family protein 94610..95041 Atopobium parvulum DSM 20469 8412928 YP_003179113.1 CDS Apar_0086 NC_013203.1 95323 95814 D hypothetical protein 95323..95814 Atopobium parvulum DSM 20469 8412929 YP_003179114.1 CDS Apar_0087 NC_013203.1 96620 96787 D hypothetical protein 96620..96787 Atopobium parvulum DSM 20469 8412930 YP_003179115.1 CDS Apar_0088 NC_013203.1 96798 97784 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pca:Pcar_1070 ferredoxin; 4Fe-4S ferredoxin 96798..97784 Atopobium parvulum DSM 20469 8412931 YP_003179116.1 CDS Apar_0089 NC_013203.1 97858 98505 D PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nma:NMA0493 putative periplasmic protein; redoxin domain-containing protein 97858..98505 Atopobium parvulum DSM 20469 8412932 YP_003179117.1 CDS Apar_0090 NC_013203.1 98683 99363 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: glo:Glov_0998 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 98683..99363 Atopobium parvulum DSM 20469 8412933 YP_003179118.1 CDS Apar_0091 NC_013203.1 99356 100516 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase; histidine kinase 99356..100516 Atopobium parvulum DSM 20469 8412934 YP_003179119.1 CDS Apar_0092 NC_013203.1 100639 101307 D PFAM: Transaldolase; KEGG: vpa:VPA1569 fructose-6-phosphate aldolase; Transaldolase 100639..101307 Atopobium parvulum DSM 20469 8412935 YP_003179120.1 CDS Apar_0093 NC_013203.1 101349 102767 D KEGG: tcx:Tcr_1102 hypothetical protein; hypothetical protein 101349..102767 Atopobium parvulum DSM 20469 8412936 YP_003179121.1 CDS Apar_0094 NC_013203.1 102983 104887 D KEGG: gme:Gmet_3532 chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 102983..104887 Atopobium parvulum DSM 20469 8412937 YP_003179122.1 CDS Apar_0095 NC_013203.1 105012 105860 D PFAM: GrpE protein; KEGG: scl:sce0004 chloroplast GrpE protein; GrpE protein HSP-70 cofactor 105012..105860 Atopobium parvulum DSM 20469 8412938 YP_003179123.1 CDS Apar_0096 NC_013203.1 105893 106825 D PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: chaperone DnaJ domain protein ; K05516 curved DNA-binding protein; chaperone DnaJ domain-containing protein 105893..106825 Atopobium parvulum DSM 20469 8412939 YP_003179124.1 CDS Apar_0097 NC_013203.1 106825 107298 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cha:CHAB381_0975 putative heat shock protein HspR; MerR family transcriptional regulator 106825..107298 Atopobium parvulum DSM 20469 8412940 YP_003179125.1 CDS Apar_0098 NC_013203.1 107464 107805 D hypothetical protein 107464..107805 Atopobium parvulum DSM 20469 8412941 YP_003179126.1 CDS Apar_0099 NC_013203.1 107789 108235 D KEGG: glo:Glov_1224 PilT protein domain protein; PilT protein domain-containing protein 107789..108235 Atopobium parvulum DSM 20469 8412942 YP_003179127.1 CDS Apar_0100 NC_013203.1 108428 111010 D KEGG: ank:AnaeK_0413 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Torsin; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 108428..111010 Atopobium parvulum DSM 20469 8412943 YP_003179128.1 CDS Apar_0101 NC_013203.1 111023 111262 D hypothetical protein 111023..111262 Atopobium parvulum DSM 20469 8412944 YP_003179129.1 CDS Apar_0102 NC_013203.1 111583 116928 D PFAM: glycoside hydrolase family 2 sugar binding; Ig domain protein; glycoside hydrolase family 2 TIM barrel; coagulation factor 5/8 type domain protein; KEGG: sus:Acid_4901 glycoside hydrolase family protein; glycoside hydrolase family protein 111583..116928 Atopobium parvulum DSM 20469 8412945 YP_003179130.1 CDS Apar_0103 NC_013203.1 117082 117645 R hypothetical protein complement(117082..117645) Atopobium parvulum DSM 20469 8412946 YP_003179131.1 CDS Apar_0104 NC_013203.1 117921 118355 D PFAM: heat shock protein Hsp20; KEGG: bcr:BCAH187_A2372 heat shock protein, HSP20 family; heat shock protein Hsp20 117921..118355 Atopobium parvulum DSM 20469 8412947 YP_003179132.1 CDS Apar_0105 NC_013203.1 118615 119457 R PFAM: beta-lactamase domain protein; KEGG: pau:PA14_51250 hypothetical protein; beta-lactamase domain-containing protein complement(118615..119457) Atopobium parvulum DSM 20469 8412948 YP_003179133.1 CDS Apar_0106 NC_013203.1 119701 121170 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: sat:SYN_02776 tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase 119701..121170 Atopobium parvulum DSM 20469 8412949 YP_003179134.1 CDS Apar_0107 NC_013203.1 121170 121718 D KEGG: bsu:BSU00680 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 121170..121718 Atopobium parvulum DSM 20469 8412950 YP_003179135.1 CDS Apar_0108 NC_013203.1 122006 123190 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 122006..123190 Atopobium parvulum DSM 20469 8412951 YP_003179136.1 CDS Apar_0109 NC_013203.1 123777 124589 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: ppr:PBPRB2022 putative hydrolase; PHP domain-containing protein complement(123777..124589) Atopobium parvulum DSM 20469 8412952 YP_003179137.1 CDS Apar_0110 NC_013203.1 124691 125470 R KEGG: bcz:BCZK3496 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(124691..125470) Atopobium parvulum DSM 20469 8412953 YP_003179138.1 CDS Apar_0111 NC_013203.1 125674 127146 D TIGRFAM: dihydropteroate synthase; 2-amino-4- hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: dihydropteroate synthase DHPS; 78-dihydro-6- hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: bbr:BB1461 dihydropteroate synthase; dihydropteroate synthase 125674..127146 Atopobium parvulum DSM 20469 8412954 YP_003179139.1 CDS Apar_0112 NC_013203.1 127137 127847 D hypothetical protein 127137..127847 Atopobium parvulum DSM 20469 8412955 YP_003179140.1 CDS Apar_0113 NC_013203.1 127883 128665 R TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: bcy:Bcer98_0061 pantothenate kinase; putative Baf family transcriptional acitvator complement(127883..128665) Atopobium parvulum DSM 20469 8412956 YP_003179141.1 CDS Apar_0114 NC_013203.1 128907 129326 D TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ade:Adeh_0689 50S ribosomal protein L31P; 50S ribosomal protein L31 128907..129326 Atopobium parvulum DSM 20469 8412957 YP_003179142.1 CDS Apar_0115 NC_013203.1 129463 131730 D KEGG: dal:Dalk_1998 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 129463..131730 Atopobium parvulum DSM 20469 8412958 YP_003179143.1 CDS Apar_0116 NC_013203.1 131826 132164 D PFAM: conserved hypothetical protein; KEGG: gme:Gmet_3421 hypothetical protein; hypothetical protein 131826..132164 Atopobium parvulum DSM 20469 8412959 YP_003179144.1 CDS Apar_0117 NC_013203.1 132168 132779 D KEGG: mxa:MXAN_1930 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 132168..132779 Atopobium parvulum DSM 20469 8412960 YP_003179145.1 CDS Apar_0118 NC_013203.1 132782 133453 D hypothetical protein 132782..133453 Atopobium parvulum DSM 20469 8412961 YP_003179146.1 CDS Apar_0119 NC_013203.1 134044 134757 D TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: mxa:MXAN_2679 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase 134044..134757 Atopobium parvulum DSM 20469 8412963 YP_003179147.1 CDS Apar_0120 NC_013203.1 134833 135429 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: hha:Hhal_0540 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 134833..135429 Atopobium parvulum DSM 20469 8412964 YP_003179148.1 CDS Apar_0121 NC_013203.1 135534 136535 D PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: gsu:GSU1613 A/G-specific adenine glycosylase, putative; HhH-GPD family protein 135534..136535 Atopobium parvulum DSM 20469 8412965 YP_003179149.1 CDS Apar_0122 NC_013203.1 136691 137236 D PFAM: Rubrerythrin; KEGG: gbm:Gbem_2313 rubrerythrin; rubrerythrin 136691..137236 Atopobium parvulum DSM 20469 8412966 YP_003179150.1 CDS Apar_0123 NC_013203.1 137433 138104 R KEGG: dds:Ddes_0198 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; iron-sulfur cluster loop; endonuclease III complement(137433..138104) Atopobium parvulum DSM 20469 8412967 YP_003179151.1 CDS Apar_0124 NC_013203.1 138305 141748 D KEGG: bsu:BSU00550 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; transcription-repair coupling factor 138305..141748 Atopobium parvulum DSM 20469 8412968 YP_003179152.1 CDS Apar_0125 NC_013203.1 141751 142833 D PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; KEGG: mmw:Mmwyl1_3508 oxidoreductase domain- containing protein; oxidoreductase domain-containing protein 141751..142833 Atopobium parvulum DSM 20469 8412969 YP_003179153.1 CDS Apar_0126 NC_013203.1 142839 143741 D TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: bsu:BSU00580 hypothetical protein; MazG family protein 142839..143741 Atopobium parvulum DSM 20469 8412970 YP_003179154.1 CDS Apar_0127 NC_013203.1 143919 144797 D KEGG: hypothetical protein; hypothetical protein 143919..144797 Atopobium parvulum DSM 20469 8412971 YP_003179155.1 CDS Apar_0128 NC_013203.1 144797 145840 D PFAM: Ppx/GppA phosphatase; KEGG: ank:AnaeK_0692 Ppx/GppA phosphatase; Ppx/GppA phosphatase 144797..145840 Atopobium parvulum DSM 20469 8412972 YP_003179156.1 CDS Apar_0129 NC_013203.1 146099 147838 D PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; Transketolase domain protein; SMART: regulatory protein GntR HTH; KEGG: gme:Gmet_0551 transketolase subunit A; UbiC transcription regulator-associated domain-containing protein 146099..147838 Atopobium parvulum DSM 20469 8412974 YP_003179157.1 CDS Apar_0130 NC_013203.1 147832 148887 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: gdi:GDI3010 putative transketolase; transketolase 147832..148887 Atopobium parvulum DSM 20469 8412975 YP_003179158.1 CDS Apar_0131 NC_013203.1 149076 150104 R hypothetical protein complement(149076..150104) Atopobium parvulum DSM 20469 8412977 YP_003179159.1 CDS Apar_0132 NC_013203.1 150101 151282 R response regulator receiver and SARP domain-containing protein complement(150101..151282) Atopobium parvulum DSM 20469 8412978 YP_003179160.1 CDS Apar_0133 NC_013203.1 151570 152784 D PFAM: iron-containing alcohol dehydrogenase; KEGG: alcohol dehydrogensae; iron-containing alcohol dehydrogenase 151570..152784 Atopobium parvulum DSM 20469 8412979 YP_003179161.1 CDS Apar_0134 NC_013203.1 153037 153678 D KEGG: bcr:BCAH187_A2002 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase 153037..153678 Atopobium parvulum DSM 20469 8412980 YP_003179162.1 CDS Apar_0135 NC_013203.1 153709 154593 R PFAM: Radical SAM domain protein; KEGG: sew:SeSA_A4819 pyruvate formate lyase activating enzyme; (formate-C-acetyltransferase)-activating protein complement(153709..154593) Atopobium parvulum DSM 20469 8412981 YP_003179163.1 CDS Apar_0136 NC_013203.1 154613 156115 R KEGG: hiq:CGSHiGG_05855 hypothetical protein; hypothetical protein complement(154613..156115) Atopobium parvulum DSM 20469 8412982 YP_003179164.1 CDS Apar_0137 NC_013203.1 156246 156977 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; KEGG: tgr:Tgr7_2797 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(156246..156977) Atopobium parvulum DSM 20469 8412983 YP_003179165.1 CDS Apar_0138 NC_013203.1 157251 158177 R PFAM: Indigoidine synthase A family protein; KEGG: slo:Shew_2724 indigoidine synthase A family protein; Indigoidine synthase A family protein complement(157251..158177) Atopobium parvulum DSM 20469 8412984 YP_003179166.1 CDS Apar_0139 NC_013203.1 158252 159334 R PFAM: PfkB domain protein; regulatory protein MarR; KEGG: slo:Shew_2725 ribokinase-like domain- containing protein; MarR family transcriptional regulator complement(158252..159334) Atopobium parvulum DSM 20469 8412985 YP_003179167.1 CDS Apar_0140 NC_013203.1 159752 160942 D KEGG: bcy:Bcer98_2786 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein; phosphopentomutase 159752..160942 Atopobium parvulum DSM 20469 8412986 YP_003179168.1 CDS Apar_0141 NC_013203.1 160942 161652 D TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: purine nucleoside phosphorylase ; K03784 purine-nucleoside phosphorylase; purine nucleoside phosphorylase 160942..161652 Atopobium parvulum DSM 20469 8412987 YP_003179169.1 CDS Apar_0142 NC_013203.1 161820 162893 D PFAM: basic membrane lipoprotein; KEGG: bcy:Bcer98_2443 basic membrane lipoprotein; basic membrane lipoprotein 161820..162893 Atopobium parvulum DSM 20469 8412988 YP_003179170.1 CDS Apar_0143 NC_013203.1 163045 164574 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A3838 sugar ABC transporter, ATP- binding protein; ABC transporter-like protein 163045..164574 Atopobium parvulum DSM 20469 8412989 YP_003179171.1 CDS Apar_0144 NC_013203.1 164571 165773 D PFAM: inner-membrane translocator; KEGG: bcz:BCZK3549 ABC transporter permease; inner-membrane translocator 164571..165773 Atopobium parvulum DSM 20469 8412990 YP_003179172.1 CDS Apar_0145 NC_013203.1 165763 166686 D PFAM: inner-membrane translocator; KEGG: bcb:BCB4264_A3887 sugar ABC transporter, permease protein; inner-membrane translocator 165763..166686 Atopobium parvulum DSM 20469 8412991 YP_003179173.1 CDS Apar_0146 NC_013203.1 166686 167231 D TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; KEGG: bha:BH1366 cytidine deaminase; cytidine deaminase 166686..167231 Atopobium parvulum DSM 20469 8412992 YP_003179174.1 CDS Apar_0147 NC_013203.1 167367 168692 D KEGG: bca:BCE_4154 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; pyrimidine-nucleoside phosphorylase 167367..168692 Atopobium parvulum DSM 20469 8412993 YP_003179175.1 CDS Apar_0148 NC_013203.1 169275 169982 D KEGG: bca:BCE_3136 TetR family transcriptional regulator; putative TetR family transcriptional regulator 169275..169982 Atopobium parvulum DSM 20469 8412994 YP_003179176.1 CDS Apar_0149 NC_013203.1 169975 174729 D TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: ccv:CCV52592_1797 CoA-substrate-specific enzyme activase domain-containing protein; CoA-substrate-specific enzyme activase 169975..174729 Atopobium parvulum DSM 20469 8412995 YP_003179177.1 CDS Apar_0150 NC_013203.1 174758 175768 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ppr:PBPRB1561 putative ribose operon repressor, RbsR; LacI family transcriptional regulator complement(174758..175768) Atopobium parvulum DSM 20469 8412996 YP_003179178.1 CDS Apar_0151 NC_013203.1 176020 176301 D PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: oan:Oant_4121 phosphotransferase system lactose/cellobiose-specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB 176020..176301 Atopobium parvulum DSM 20469 8412997 YP_003179179.1 CDS Apar_0152 NC_013203.1 176372 177796 D PFAM: PTS system Galactitol-specific IIC component; KEGG: vei:Veis_2223 PTS system galactitol-specific IIC component; PTS system Galactitol-specific IIC component 176372..177796 Atopobium parvulum DSM 20469 8412998 YP_003179180.1 CDS Apar_0153 NC_013203.1 177900 178472 D hypothetical protein 177900..178472 Atopobium parvulum DSM 20469 8412999 YP_003179181.1 CDS Apar_0154 NC_013203.1 178475 178948 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: oan:Oant_4120 putative PTS IIA-like nitrogen- regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 178475..178948 Atopobium parvulum DSM 20469 8413000 YP_003179182.1 CDS Apar_0155 NC_013203.1 179005 180267 D KEGG: bcb:BCB4264_A3843 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase T 179005..180267 Atopobium parvulum DSM 20469 8413001 YP_003179183.1 CDS Apar_0156 NC_013203.1 180487 181029 D hypothetical protein 180487..181029 Atopobium parvulum DSM 20469 8413002 YP_003179184.1 CDS Apar_0157 NC_013203.1 181155 182012 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase; KEGG: eca:ECA1906 putative hydrolase; HAD-superfamily hydrolase 181155..182012 Atopobium parvulum DSM 20469 8413003 YP_003179185.1 CDS Apar_0158 NC_013203.1 182014 182811 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: vha:VIBHAR_06933 hypothetical protein; cof family hydrolase 182014..182811 Atopobium parvulum DSM 20469 8413004 YP_003179186.1 CDS Apar_0159 NC_013203.1 183038 184099 D KEGG: vsa:VSAL_I0829 N-acetylglucosamine repressor; hypothetical protein 183038..184099 Atopobium parvulum DSM 20469 8413005 YP_003179187.1 CDS Apar_0160 NC_013203.1 184288 185589 D KEGG: asu:Asuc_1063 anaerobic C4-dicarboxylate antiporter; hypothetical protein 184288..185589 Atopobium parvulum DSM 20469 8413006 YP_003179188.1 CDS Apar_0161 NC_013203.1 185681 187828 D PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bpy:Bphyt_6536 5-oxoprolinase (ATP- hydrolyzing); hydantoinase/oxoprolinase 185681..187828 Atopobium parvulum DSM 20469 8413007 YP_003179189.1 CDS Apar_0162 NC_013203.1 187835 188488 D hypothetical protein 187835..188488 Atopobium parvulum DSM 20469 8413008 YP_003179190.1 CDS Apar_0163 NC_013203.1 188478 189857 D KEGG: shl:Shal_3319 FAD dependent oxidoreductase; hypothetical protein 188478..189857 Atopobium parvulum DSM 20469 8413009 YP_003179191.1 CDS Apar_0164 NC_013203.1 190158 191543 D PFAM: protein of unknown function DUF214; KEGG: ban:BA5084 ABC transporter, permease protein; hypothetical protein 190158..191543 Atopobium parvulum DSM 20469 8413011 YP_003179192.1 CDS Apar_0165 NC_013203.1 191706 192467 D TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; KEGG: hap:HAPS_1298 ribonuclease PH; ribonuclease PH 191706..192467 Atopobium parvulum DSM 20469 8413012 YP_003179193.1 CDS Apar_0166 NC_013203.1 192470 193120 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: gsu:GSU1794 HAM1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 192470..193120 Atopobium parvulum DSM 20469 8413013 YP_003179194.1 CDS Apar_0167 NC_013203.1 193275 194009 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: swd:Swoo_0943 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 193275..194009 Atopobium parvulum DSM 20469 8413014 YP_003179195.1 CDS Apar_0168 NC_013203.1 194242 194532 D PFAM: protein of unknown function DUF1021; KEGG: bcu:BCAH820_0048 veg protein; hypothetical protein 194242..194532 Atopobium parvulum DSM 20469 8413015 YP_003179196.1 CDS Apar_0169 NC_013203.1 194549 195451 D PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: rce:RC1_3179 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; 4-(cytidine 5'-diphospho)-2-C-methyl-D- erythritol kinase 194549..195451 Atopobium parvulum DSM 20469 8413016 YP_003179197.1 CDS Apar_0170 NC_013203.1 196055 197524 D PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: spq:SPAB_00632 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA 196055..197524 Atopobium parvulum DSM 20469 8413018 YP_003179198.1 CDS Apar_0171 NC_013203.1 197690 197974 D PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: stm:STM2343 putative cytoplasmic protein; PTS system lactose/cellobiose-specific transporter subunit IIB 197690..197974 Atopobium parvulum DSM 20469 8413019 YP_003179199.1 CDS Apar_0172 NC_013203.1 198078 198899 D PFAM: Transketolase domain protein; KEGG: transketolase domain protein ; K00615 transketolase; transketolase 198078..198899 Atopobium parvulum DSM 20469 8413020 YP_003179200.1 CDS Apar_0173 NC_013203.1 198901 199842 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: pca:Pcar_2719 transketolase, C-terminal subunit; transketolase 198901..199842 Atopobium parvulum DSM 20469 8413021 YP_003179201.1 CDS Apar_0174 NC_013203.1 200277 201224 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(200277..201224) Atopobium parvulum DSM 20469 8413022 YP_003179202.1 CDS Apar_0175 NC_013203.1 201563 201856 D KEGG: rpe:RPE_1573 hypothetical protein; hypothetical protein 201563..201856 Atopobium parvulum DSM 20469 8413023 YP_003179203.1 CDS Apar_0176 NC_013203.1 202008 204767 D KEGG: prw:PsycPRwf_2393 type II restriction enzyme methylase subunits-like protein; type II restriction enzyme methylase subunits- like protein 202008..204767 Atopobium parvulum DSM 20469 8413024 YP_003179204.1 CDS Apar_0177 NC_013203.1 204941 206914 R KEGG: pha:PSHAb0021 putative orphan protein; hypothetical protein complement(204941..206914) Atopobium parvulum DSM 20469 8413025 YP_003179205.1 CDS Apar_0178 NC_013203.1 207146 208333 D KEGG: ppr:PBPRB0411 hypothetical protein; protein tyrosine/serine phosphatase 207146..208333 Atopobium parvulum DSM 20469 8413026 YP_003179206.1 CDS Apar_0179 NC_013203.1 208482 208952 D PFAM: GCN5-related N-acetyltransferase; KEGG: vbsC; vicibactin acetylase protein; N-acetyltransferase GCN5 208482..208952 Atopobium parvulum DSM 20469 8413027 YP_003179207.1 CDS Apar_0180 NC_013203.1 208989 209516 D PFAM: GCN5-related N-acetyltransferase; KEGG: lpn:lpg1613 acetyltransferase; N-acetyltransferase GCN5 208989..209516 Atopobium parvulum DSM 20469 8413028 YP_003179208.1 CDS Apar_0181 NC_013203.1 209902 212400 D KEGG: bha:BH0548 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: GCN5-related N-acetyltransferase; peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 209902..212400 Atopobium parvulum DSM 20469 8413029 YP_003179209.1 CDS Apar_0182 NC_013203.1 212411 214441 D TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pca:Pcar_2216 NAD synthetase; NAD+ synthetase 212411..214441 Atopobium parvulum DSM 20469 8413030 YP_003179210.1 CDS Apar_0183 NC_013203.1 214707 214997 D PFAM: chaperonin Cpn10; KEGG: ppd:Ppro_2803 co-chaperonin GroES; chaperonin Cpn10 214707..214997 Atopobium parvulum DSM 20469 8413031 YP_003179211.1 CDS Apar_0184 NC_013203.1 215060 216697 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rso:RSc0642 chaperonin GroEL; chaperonin GroEL 215060..216697 Atopobium parvulum DSM 20469 8413032 YP_003179212.1 CDS Apar_0185 NC_013203.1 217040 218425 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sit:TM1040_0396 4Fe-4S ferredoxin, iron- sulfur binding; 4Fe-4S ferredoxin 217040..218425 Atopobium parvulum DSM 20469 8413033 YP_003179213.1 CDS Apar_0186 NC_013203.1 218518 219582 D TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dno:DNO_1325 GTP-binding protein; GTP-binding protein YchF 218518..219582 Atopobium parvulum DSM 20469 8413034 YP_003179214.1 CDS Apar_0187 NC_013203.1 219727 221418 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bca:BCE_5306 LytR family transcription antiterminator; cell envelope-related transcriptional attenuator complement(219727..221418) Atopobium parvulum DSM 20469 8413035 YP_003179215.1 CDS Apar_0188 NC_013203.1 221587 223113 R TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; surface protein from Gram-positive cocci anchor region; KEGG: bcr:BCAH187_E0033 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein complement(221587..223113) Atopobium parvulum DSM 20469 8413036 YP_003179216.1 CDS Apar_0189 NC_013203.1 223435 225024 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; ExsB family protein; KEGG: bcu:BCAH820_0294 GMP synthase; GMP synthase 223435..225024 Atopobium parvulum DSM 20469 8413037 YP_003179217.1 CDS Apar_0190 NC_013203.1 225189 226067 R KEGG: phage head-tail adaptor family protein; hypothetical protein complement(225189..226067) Atopobium parvulum DSM 20469 8413038 YP_003179218.1 CDS Apar_0193 NC_013203.1 227354 230041 D PFAM: SMC domain protein; PHP domain protein; KEGG: aeh:Mlg_1540 SMC domain-containing protein; SMC domain-containing protein 227354..230041 Atopobium parvulum DSM 20469 8413041 YP_003179219.1 CDS Apar_0194 NC_013203.1 230772 231335 R hypothetical protein complement(230772..231335) Atopobium parvulum DSM 20469 8413042 YP_003179220.1 CDS Apar_0196 NC_013203.1 232534 233520 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ade:Adeh_1687 tyrosine recombinase XerD subunit; integrase family protein complement(232534..233520) Atopobium parvulum DSM 20469 8413044 YP_003179221.1 CDS Apar_0197 NC_013203.1 233616 236993 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; KEGG: amc:MADE_03609 type I site-specific restriction-modification system, R (restriction) subunit and related helicase; type III restriction protein res subunit complement(233616..236993) Atopobium parvulum DSM 20469 8413045 YP_003179222.1 CDS Apar_0198 NC_013203.1 237003 238163 R PFAM: restriction modification system DNA specificity domain; KEGG: neu:NE2496 restriction modification system, type I; restriction modification system DNA specificity domain-containing protein complement(237003..238163) Atopobium parvulum DSM 20469 8413046 YP_003179223.1 CDS Apar_0199 NC_013203.1 238156 239676 R PFAM: N-6 DNA methylase; KEGG: gur:Gura_2095 N-6 DNA methylase; N-6 DNA methylase complement(238156..239676) Atopobium parvulum DSM 20469 8413047 YP_003179224.1 CDS Apar_0200 NC_013203.1 239719 240306 R KEGG: tdn:Suden_0941 restriction modification system DNA specificity subunit; hypothetical protein complement(239719..240306) Atopobium parvulum DSM 20469 8413048 YP_003179225.1 CDS Apar_0201 NC_013203.1 240440 241822 D hypothetical protein 240440..241822 Atopobium parvulum DSM 20469 8413049 YP_003179226.1 CDS Apar_0202 NC_013203.1 241993 242772 R hypothetical protein complement(241993..242772) Atopobium parvulum DSM 20469 8413050 YP_003179227.1 CDS Apar_0204 NC_013203.1 243326 243988 D hypothetical protein 243326..243988 Atopobium parvulum DSM 20469 8413052 YP_003179228.1 CDS Apar_0205 NC_013203.1 243990 245051 D KEGG: hypothetical protein; hypothetical protein 243990..245051 Atopobium parvulum DSM 20469 8413053 YP_003179229.1 CDS Apar_0206 NC_013203.1 245052 245471 D hypothetical protein 245052..245471 Atopobium parvulum DSM 20469 8413054 YP_003179230.1 CDS Apar_0207 NC_013203.1 245669 246568 D PFAM: filamentation induced by cAMP protein Fic; KEGG: hpa:HPAG1_p002 hypothetical protein; filamentation induced by cAMP protein fic 245669..246568 Atopobium parvulum DSM 20469 8413055 YP_003179231.1 CDS Apar_0208 NC_013203.1 246638 248467 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: sus:Acid_7303 glutamine--fructose-6-phosphate transaminase; glucosamine/fructose-6-phosphate aminotransferase 246638..248467 Atopobium parvulum DSM 20469 8413056 YP_003179232.1 CDS Apar_0209 NC_013203.1 248639 248977 D PFAM: transcriptional regulator PadR family protein; KEGG: bcr:BCAH187_A3051 hypothetical protein; PadR-like family transcriptional regulator 248639..248977 Atopobium parvulum DSM 20469 8413057 YP_003179233.1 CDS Apar_0210 NC_013203.1 248980 249531 D KEGG: bca:BCE_1074 hypothetical protein; hypothetical protein 248980..249531 Atopobium parvulum DSM 20469 8413058 YP_003179234.1 CDS Apar_0211 NC_013203.1 250314 251861 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0246 ABC transporter related; ABC transporter-like protein 250314..251861 Atopobium parvulum DSM 20469 8413059 YP_003179235.1 CDS Apar_0212 NC_013203.1 251933 253162 R KEGG: dal:Dalk_3047 protein of unknown function UPF0089; hypothetical protein complement(251933..253162) Atopobium parvulum DSM 20469 8413060 YP_003179236.1 CDS Apar_0213 NC_013203.1 253497 253997 D KEGG: noc:Noc_2817 S-isoprenylcysteine methyltransferase-like protein; Putative protein-S-isoprenylcysteine methyltransferase-like protein 253497..253997 Atopobium parvulum DSM 20469 8413061 YP_003179237.1 CDS Apar_0214 NC_013203.1 254105 254572 R KEGG: pca:Pcar_1078 putative flavodoxin; putative flavodoxin complement(254105..254572) Atopobium parvulum DSM 20469 8413062 YP_003179238.1 CDS Apar_0215 NC_013203.1 254575 255315 R PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: apa:APP7_1823 tetracycline repressor protein class B from transposon Tn10; TetR family transcriptional regulator complement(254575..255315) Atopobium parvulum DSM 20469 8413063 YP_003179239.1 CDS Apar_0216 NC_013203.1 255332 256105 R PFAM: ABC-2 type transporter; KEGG: sus:Acid_1494 ABC-2 type transporter; ABC-2 type transporter complement(255332..256105) Atopobium parvulum DSM 20469 8413064 YP_003179240.1 CDS Apar_0217 NC_013203.1 256092 257024 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0215 ABC transporter-related protein; ABC transporter-like protein complement(256092..257024) Atopobium parvulum DSM 20469 8413065 YP_003179241.1 CDS Apar_0218 NC_013203.1 257214 257831 R PFAM: peptidase S51 dipeptidase E; KEGG: Clan PC(S), family S51, peptidase E-like serine peptidase ; K05995 dipeptidase E; peptidase S51 dipeptidase E complement(257214..257831) Atopobium parvulum DSM 20469 8413066 YP_003179242.1 CDS Apar_0219 NC_013203.1 257917 259119 R KEGG: sun:SUN_0885 hypothetical protein; hypothetical protein complement(257917..259119) Atopobium parvulum DSM 20469 8413067 YP_003179243.1 CDS Apar_0220 NC_013203.1 259396 259785 D PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bam:Bamb_5788 GntR family transcriptional regulator; GntR family transcriptional regulator 259396..259785 Atopobium parvulum DSM 20469 8413068 YP_003179244.1 CDS Apar_0221 NC_013203.1 259801 260922 D PFAM: protein of unknown function DUF1648; hypothetical protein 259801..260922 Atopobium parvulum DSM 20469 8413069 YP_003179245.1 CDS Apar_0222 NC_013203.1 261120 261401 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: nmu:Nmul_A2034 RelB antitoxin; RelB/DinJ family addiction module antitoxin 261120..261401 Atopobium parvulum DSM 20469 8413070 YP_003179246.1 CDS Apar_0223 NC_013203.1 261404 261682 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: lpc:LPC_2177 hypothetical protein; RelE/StbE family addiction module toxin 261404..261682 Atopobium parvulum DSM 20469 8413071 YP_003179247.1 CDS Apar_0224 NC_013203.1 261742 262245 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bca:BCE_1071 hypothetical protein; BadM/Rrf2 family transcriptional regulator complement(261742..262245) Atopobium parvulum DSM 20469 8413072 YP_003179248.1 CDS Apar_0225 NC_013203.1 262382 262756 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: dvm:DvMF_2023 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 262382..262756 Atopobium parvulum DSM 20469 8413073 YP_003179249.1 CDS Apar_0226 NC_013203.1 262867 263319 D PFAM: isochorismatase hydrolase; KEGG: gbm:Gbem_0508 isochorismatase hydrolase; isochorismatase hydrolase 262867..263319 Atopobium parvulum DSM 20469 8413074 YP_003179250.1 CDS Apar_0227 NC_013203.1 263372 263818 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 263372..263818 Atopobium parvulum DSM 20469 8413075 YP_003179251.1 CDS Apar_0228 NC_013203.1 263971 265368 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: swi:Swit_2151 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 263971..265368 Atopobium parvulum DSM 20469 8413076 YP_003179252.1 CDS Apar_0229 NC_013203.1 265378 266172 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_7937 ABC transporter related; ABC transporter-like protein 265378..266172 Atopobium parvulum DSM 20469 8413077 YP_003179253.1 CDS Apar_0230 NC_013203.1 266169 267377 D PFAM: protein of unknown function DUF214; KEGG: rce:RC1_1640 macrolide-specific ABC-type efflux carrier; hypothetical protein 266169..267377 Atopobium parvulum DSM 20469 8413078 YP_003179254.1 CDS Apar_0231 NC_013203.1 267405 268238 R PFAM: protein of unknown function DUF364; KEGG: ccv:CCV52592_1453 sigma 54 modulation protein/ribosomal protein S30EA; hypothetical protein complement(267405..268238) Atopobium parvulum DSM 20469 8413079 YP_003179255.1 CDS Apar_0232 NC_013203.1 268497 269108 D KEGG: asu:Asuc_2076 hypothetical protein; hypothetical protein 268497..269108 Atopobium parvulum DSM 20469 8413080 YP_003179256.1 CDS Apar_0233 NC_013203.1 269150 270412 R PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mrd:Mrad2831_2432 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; peptidase M20 complement(269150..270412) Atopobium parvulum DSM 20469 8413081 YP_003179257.1 CDS Apar_0234 NC_013203.1 270610 272073 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: rme:Rmet_3725 uracil-xanthine permease; uracil-xanthine permease 270610..272073 Atopobium parvulum DSM 20469 8413082 YP_003179258.1 CDS Apar_0235 NC_013203.1 272177 272824 R PFAM: YheO domain protein; KEGG: dds:Ddes_2335 YheO domain protein; YheO domain-containing protein complement(272177..272824) Atopobium parvulum DSM 20469 8413083 YP_003179259.1 CDS Apar_0236 NC_013203.1 273176 274531 D in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; putative chlorohydrolase/aminohydrolase 273176..274531 Atopobium parvulum DSM 20469 8413084 YP_003179260.1 CDS Apar_0237 NC_013203.1 274659 277652 D with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; putative selenate reductase subunit YgfK 274659..277652 Atopobium parvulum DSM 20469 8413085 YP_003179261.1 CDS Apar_0238 NC_013203.1 277832 280603 D TIGRFAM: selenium-dependent molybdenum hydroxylase 1; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: mag:amb1483 aldehyde oxidoreductase; selenium-dependent molybdenum hydroxylase 1 277832..280603 Atopobium parvulum DSM 20469 8413086 YP_003179262.1 CDS Apar_0239 NC_013203.1 280803 282029 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 280803..282029 Atopobium parvulum DSM 20469 8413087 YP_003179263.1 CDS Apar_0240 NC_013203.1 282264 283646 D Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 282264..283646 Atopobium parvulum DSM 20469 8413088 YP_003179264.1 CDS Apar_0241 NC_013203.1 283698 284900 D TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: aha:AHA_2161 hypothetical protein; aspartate/ornithine carbamoyltransferase family protein 283698..284900 Atopobium parvulum DSM 20469 8413089 YP_003179265.1 CDS Apar_0242 NC_013203.1 285038 285979 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 285038..285979 Atopobium parvulum DSM 20469 8413090 YP_003179266.1 CDS Apar_0243 NC_013203.1 286047 286697 D KEGG: gme:Gmet_2140 molybdenum cofactor biosynthesis protein; MobA-like protein 286047..286697 Atopobium parvulum DSM 20469 8413091 YP_003179267.1 CDS Apar_0244 NC_013203.1 286697 288052 D KEGG: scl:sce6399 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase 286697..288052 Atopobium parvulum DSM 20469 8413092 YP_003179268.1 CDS Apar_0245 NC_013203.1 288145 288525 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dal:Dalk_4660 endoribonuclease L-PSP; endoribonuclease L-PSP 288145..288525 Atopobium parvulum DSM 20469 8413093 YP_003179269.1 CDS Apar_0246 NC_013203.1 288739 289371 D hypothetical protein 288739..289371 Atopobium parvulum DSM 20469 8413094 YP_003179270.1 CDS Apar_0247 NC_013203.1 289337 290041 R KEGG: hypothetical protein; hypothetical protein complement(289337..290041) Atopobium parvulum DSM 20469 8413095 YP_003179271.1 CDS Apar_0248 NC_013203.1 290141 290752 D PFAM: SirA family protein; KEGG: sat:SYN_01072 putative cytoplasmic protein; SirA family protein 290141..290752 Atopobium parvulum DSM 20469 8413096 YP_003179272.1 CDS Apar_0249 NC_013203.1 290763 291941 D PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ppd:Ppro_2495 cysteine desulfurase family protein; cysteine desulfurase 290763..291941 Atopobium parvulum DSM 20469 8413097 YP_003179273.1 CDS Apar_0251 NC_013203.1 292237 293043 D TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: sbo:SBO_3109 putative synthase; selenium-dependent molybdenum hydroxylase system protein 292237..293043 Atopobium parvulum DSM 20469 8413099 YP_003179274.1 CDS Apar_0252 NC_013203.1 293046 294104 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: ppd:Ppro_1707 selenide, water dikinase; selenide, water dikinase 293046..294104 Atopobium parvulum DSM 20469 8413100 YP_003179275.1 CDS Apar_0253 NC_013203.1 294157 295170 D PFAM: protein of unknown function DUF182; KEGG: sfu:Sfum_1316 protein of unknown function DUF182; hypothetical protein 294157..295170 Atopobium parvulum DSM 20469 8413101 YP_003179276.1 CDS Apar_0254 NC_013203.1 295274 296149 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: bsu:BSU33380 hypothetical protein; molybdenum ABC transporter periplasmic molybdate-binding protein 295274..296149 Atopobium parvulum DSM 20469 8413102 YP_003179277.1 CDS Apar_0255 NC_013203.1 296182 296871 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rso:RS05467 hypothetical protein; molybdate ABC transporter inner membrane subunit 296182..296871 Atopobium parvulum DSM 20469 8413103 YP_003179278.1 CDS Apar_0256 NC_013203.1 296874 297977 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: shl:Shal_0899 ABC transporter related; ABC transporter-like protein 296874..297977 Atopobium parvulum DSM 20469 8413104 YP_003179279.1 CDS Apar_0257 NC_013203.1 297970 298917 D KEGG: sat:SYN_00381 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 297970..298917 Atopobium parvulum DSM 20469 8413105 YP_003179280.1 CDS Apar_0258 NC_013203.1 298919 299398 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: hip:CGSHiEE_03685 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 298919..299398 Atopobium parvulum DSM 20469 8413106 YP_003179281.1 CDS Apar_0259 NC_013203.1 299395 299883 D PFAM: MOSC domain containing protein; KEGG: gme:Gmet_0302 MOSC; MOSC domain-containing protein 299395..299883 Atopobium parvulum DSM 20469 8413107 YP_003179282.1 CDS Apar_0260 NC_013203.1 299870 300904 D PFAM: molybdopterin binding domain; KEGG: dds:Ddes_1824 molybdopterin binding domain protein; molybdopterin binding domain-containing protein 299870..300904 Atopobium parvulum DSM 20469 8413108 YP_003179283.1 CDS Apar_0261 NC_013203.1 300907 301416 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sfu:Sfum_0070 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 300907..301416 Atopobium parvulum DSM 20469 8413109 YP_003179284.1 CDS Apar_0262 NC_013203.1 301485 302696 R PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(301485..302696) Atopobium parvulum DSM 20469 8413110 YP_003179285.1 CDS Apar_0263 NC_013203.1 302717 303325 R PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(302717..303325) Atopobium parvulum DSM 20469 8413111 YP_003179286.1 CDS Apar_0264 NC_013203.1 303343 304305 R PFAM: ApbE family lipoprotein; KEGG: eta:ETA_19250 putative thiamine biosynthesis protein; ApbE family lipoprotein complement(303343..304305) Atopobium parvulum DSM 20469 8413112 YP_003179287.1 CDS Apar_0265 NC_013203.1 304594 305370 D hypothetical protein 304594..305370 Atopobium parvulum DSM 20469 8413113 YP_003179288.1 CDS Apar_0266 NC_013203.1 305471 309523 R TIGRFAM: cell wall/surface repeat protein; PFAM: surface protein from Gram-positive cocci anchor region; KEGG: similar to zymogen granule membrane glycoprotein 2; cell wall/surface repeat-containing protein complement(305471..309523) Atopobium parvulum DSM 20469 8413114 YP_003179289.1 CDS Apar_0267 NC_013203.1 310048 310692 D KEGG: bcb:BCB4264_A2172 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 310048..310692 Atopobium parvulum DSM 20469 8413115 YP_003179290.1 CDS Apar_0268 NC_013203.1 310794 311921 D PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; KEGG: asu:Asuc_0713 methionine synthase vitamin-B12 independent; Methionine synthase vitamin-B12 independent 310794..311921 Atopobium parvulum DSM 20469 8413116 YP_003179291.1 CDS Apar_0269 NC_013203.1 312054 313046 D KEGG: bha:BH1815 hypothetical protein; transcriptional regulator protein-like protein 312054..313046 Atopobium parvulum DSM 20469 8413117 YP_003179292.1 CDS Apar_0270 NC_013203.1 313085 313408 R KEGG: gsu:GSU0050 hypothetical protein; hypothetical protein complement(313085..313408) Atopobium parvulum DSM 20469 8413118 YP_003179293.1 CDS Apar_0271 NC_013203.1 313527 314075 D PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt2135 putative acetyltransferase; N-acetyltransferase GCN5 313527..314075 Atopobium parvulum DSM 20469 8413119 YP_003179294.1 CDS Apar_0272 NC_013203.1 314280 316016 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hiq:CGSHiGG_06595 ABC transporter ATP-binding protein; ABC transporter-like protein 314280..316016 Atopobium parvulum DSM 20469 8413120 YP_003179295.1 CDS Apar_0273 NC_013203.1 316016 317716 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hit:NTHI0785 ABC transporter ATP-binding protein; ABC transporter-like protein 316016..317716 Atopobium parvulum DSM 20469 8413121 YP_003179296.1 CDS Apar_0274 NC_013203.1 317716 318033 D KEGG: vfi:VF_A0934 hypothetical protein; hypothetical protein 317716..318033 Atopobium parvulum DSM 20469 8413122 YP_003179297.1 CDS Apar_0275 NC_013203.1 318174 318833 D KEGG: mpo:Mpop_2236 hypothetical protein; hypothetical protein 318174..318833 Atopobium parvulum DSM 20469 8413123 YP_003179298.1 CDS Apar_0276 NC_013203.1 319011 319232 D hypothetical protein 319011..319232 Atopobium parvulum DSM 20469 8413124 YP_003179299.1 CDS Apar_0277 NC_013203.1 319237 320535 D KEGG: pde:Pden_2104 major facilitator superfamily MFS_1; hypothetical protein 319237..320535 Atopobium parvulum DSM 20469 8413125 YP_003179300.1 CDS Apar_0278 NC_013203.1 320528 320905 D hypothetical protein 320528..320905 Atopobium parvulum DSM 20469 8413126 YP_003179301.1 CDS Apar_0279 NC_013203.1 320976 321116 R hypothetical protein complement(320976..321116) Atopobium parvulum DSM 20469 8413127 YP_003179302.1 CDS Apar_0280 NC_013203.1 321130 321966 R PFAM: ABC-3 protein; transport system permease protein; KEGG: rpb:RPB_3405 hypothetical protein; ABC-3 protein complement(321130..321966) Atopobium parvulum DSM 20469 8413128 YP_003179303.1 CDS Apar_0281 NC_013203.1 321959 322711 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmr:PMI1026 iron ABC transporter, ATP-binding protein; ABC transporter-like protein complement(321959..322711) Atopobium parvulum DSM 20469 8413129 YP_003179304.1 CDS Apar_0282 NC_013203.1 322719 323759 R PFAM: periplasmic solute binding protein; KEGG: rle:RL3884 iron ABC transporter substrate binding protein; periplasmic solute binding protein complement(322719..323759) Atopobium parvulum DSM 20469 8413130 YP_003179305.1 CDS Apar_0283 NC_013203.1 324104 324856 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mno:Mnod_3070 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 324104..324856 Atopobium parvulum DSM 20469 8413131 YP_003179306.1 CDS Apar_0284 NC_013203.1 324867 325862 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 324867..325862 Atopobium parvulum DSM 20469 8413132 YP_003179307.1 CDS Apar_0285 NC_013203.1 325982 326791 R PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0989 AraC/XylS family transcriptional regulator; AraC family transcriptional regulator complement(325982..326791) Atopobium parvulum DSM 20469 8413133 YP_003179308.1 CDS Apar_0286 NC_013203.1 327164 329203 D PFAM: 60 kDa inner membrane insertion protein; KEGG: hhe:HH0112 putative inner membrane protein translocase component YidC; 60 kDa inner membrane insertion protein 327164..329203 Atopobium parvulum DSM 20469 8413134 YP_003179309.1 CDS Apar_0287 NC_013203.1 329196 331346 D hypothetical protein 329196..331346 Atopobium parvulum DSM 20469 8413135 YP_003179310.1 CDS Apar_0288 NC_013203.1 331500 333137 R KEGG: hypothetical protein; hypothetical protein complement(331500..333137) Atopobium parvulum DSM 20469 8413136 YP_003179311.1 CDS Apar_0289 NC_013203.1 333282 334685 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ccs:CCNA_02240 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 333282..334685 Atopobium parvulum DSM 20469 8413137 YP_003179312.1 CDS Apar_0290 NC_013203.1 334856 336751 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcu:BCAH820_0652 heavy metal-transporting ATPase; heavy metal translocating P-type ATPase 334856..336751 Atopobium parvulum DSM 20469 8413138 YP_003179313.1 CDS Apar_0291 NC_013203.1 336828 337655 R PFAM: putative methyltransferase; KEGG: bcy:Bcer98_3362 tRNA (guanine-N(7))- methyltransferase; putative methyltransferase complement(336828..337655) Atopobium parvulum DSM 20469 8413139 YP_003179314.1 CDS Apar_0292 NC_013203.1 337692 338309 R KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(337692..338309) Atopobium parvulum DSM 20469 8413140 YP_003179315.1 CDS Apar_0293 NC_013203.1 338589 339836 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase; amidohydrolase 338589..339836 Atopobium parvulum DSM 20469 8413141 YP_003179316.1 CDS Apar_0294 NC_013203.1 339962 341107 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bsu:BSU03360 hypothetical protein; cobalamin synthesis protein P47K 339962..341107 Atopobium parvulum DSM 20469 8413142 YP_003179317.1 CDS Apar_0295 NC_013203.1 341190 342041 D PFAM: Silent information regulator protein Sir2; KEGG: cvi:CV_0294 NAD-dependent deacetylase; silent information regulator protein Sir2 341190..342041 Atopobium parvulum DSM 20469 8413143 YP_003179318.1 CDS Apar_0296 NC_013203.1 342146 343813 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(342146..343813) Atopobium parvulum DSM 20469 8413144 YP_003179319.1 CDS Apar_0297 NC_013203.1 344065 344811 D PFAM: MORN repeat-containing protein; SMART: MORN repeat-containing protein; KEGG: sil:SPO0425 MORN repeat-containing protein; MORN repeat-containing protein 344065..344811 Atopobium parvulum DSM 20469 8413145 YP_003179320.1 CDS Apar_0298 NC_013203.1 344801 346612 D PFAM: acyltransferase 3; KEGG: bsu:BSU27140 hypothetical protein; acyltransferase 3 344801..346612 Atopobium parvulum DSM 20469 8413146 YP_003179321.1 CDS Apar_0299 NC_013203.1 346846 347112 R hypothetical protein complement(346846..347112) Atopobium parvulum DSM 20469 8413147 YP_003179322.1 CDS Apar_0300 NC_013203.1 347220 348899 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 347220..348899 Atopobium parvulum DSM 20469 8413148 YP_003179323.1 CDS Apar_0301 NC_013203.1 349067 349582 D PFAM: Ferritin Dps family protein; KEGG: gbm:Gbem_2519 ferritin Dps family protein; ferritin Dps family protein 349067..349582 Atopobium parvulum DSM 20469 8413149 YP_003179324.1 CDS Apar_0302 NC_013203.1 349598 350503 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bcy:Bcer98_0850 hypothetical protein; hypothetical protein complement(349598..350503) Atopobium parvulum DSM 20469 8413150 YP_003179325.1 CDS Apar_0303 NC_013203.1 350507 351529 R TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: bsu:BSU23580 L-asparaginase; type I L-asparaginase complement(350507..351529) Atopobium parvulum DSM 20469 8413151 YP_003179326.1 CDS Apar_0304 NC_013203.1 351680 352153 D hypothetical protein 351680..352153 Atopobium parvulum DSM 20469 8413152 YP_003179327.1 CDS Apar_0305 NC_013203.1 352235 353197 R PFAM: glycoside hydrolase family 25; KEGG: mlo:mlr7748 lysozyme precursor; glycoside hydrolase family protein complement(352235..353197) Atopobium parvulum DSM 20469 8413153 YP_003179328.1 CDS Apar_0306 NC_013203.1 353194 354675 R PFAM: Domain of unknown function DUF1846; KEGG: ATP-dependent Zn protease; hypothetical protein complement(353194..354675) Atopobium parvulum DSM 20469 8413154 YP_003179329.1 CDS Apar_0307 NC_013203.1 354780 355229 D hypothetical protein 354780..355229 Atopobium parvulum DSM 20469 8413155 YP_003179330.1 CDS Apar_0308 NC_013203.1 355311 355751 R PFAM: protein of unknown function UPF0099; KEGG: CG1307; K04794 peptidyl-tRNA hydrolase, PTH2 family; hypothetical protein complement(355311..355751) Atopobium parvulum DSM 20469 8413156 YP_003179331.1 CDS Apar_0309 NC_013203.1 355970 356458 D PFAM: peptidase A24A prepilin type IV; KEGG: sal:Sala_1131 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 355970..356458 Atopobium parvulum DSM 20469 8413157 YP_003179332.1 CDS Apar_0310 NC_013203.1 357127 357546 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 357127..357546 Atopobium parvulum DSM 20469 8413158 YP_003179333.1 CDS Apar_0311 NC_013203.1 357656 357904 D hypothetical protein 357656..357904 Atopobium parvulum DSM 20469 8413159 YP_003179334.1 CDS Apar_0312 NC_013203.1 358149 358769 D PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_02573 acrAB operon repressor; TetR family transcriptional regulator 358149..358769 Atopobium parvulum DSM 20469 8413160 YP_003179335.1 CDS Apar_0313 NC_013203.1 358856 359464 D hypothetical protein 358856..359464 Atopobium parvulum DSM 20469 8413161 YP_003179336.1 CDS Apar_0314 NC_013203.1 359642 360652 D KEGG: bsu:BSU35790 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase 359642..360652 Atopobium parvulum DSM 20469 8413162 YP_003179337.1 CDS Apar_0315 NC_013203.1 360740 361909 D KEGG: pin:Ping_2848 hemagglutinin/hemolysin-related protein; hypothetical protein 360740..361909 Atopobium parvulum DSM 20469 8413163 YP_003179338.1 CDS Apar_0316 NC_013203.1 362032 362481 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ppd:Ppro_1689 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(362032..362481) Atopobium parvulum DSM 20469 8413164 YP_003179339.1 CDS Apar_0317 NC_013203.1 362543 364099 R PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: bsu:BSU22080 hypothetical protein; Carboxypeptidase Taq complement(362543..364099) Atopobium parvulum DSM 20469 8413165 YP_003179340.1 CDS Apar_0318 NC_013203.1 364294 365592 D PFAM: aminotransferase class I and II; KEGG: mxa:MXAN_0212 aminotransferase, class I and II family protein; GntR family transcriptional regulator 364294..365592 Atopobium parvulum DSM 20469 8413166 YP_003179341.1 CDS Apar_0319 NC_013203.1 365595 366596 D PFAM: D-alanine--D-alanine ligase domain protein; KEGG: abo:ABO_0600 D-alanine-D-alanine ligase B; D-alanine--D-alanine ligase 365595..366596 Atopobium parvulum DSM 20469 8413167 YP_003179342.1 CDS Apar_0320 NC_013203.1 366605 367573 D PFAM: ROK family protein; KEGG: bcr:BCAH187_A4396 glucokinase; ROK family protein 366605..367573 Atopobium parvulum DSM 20469 8413168 YP_003179343.1 CDS Apar_0321 NC_013203.1 367770 369275 D TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; KEGG: stm:STM3255 putative phosphotransferase system fructose-specific component IIB; PTS system fructose subfamily transporter subunit IIC 367770..369275 Atopobium parvulum DSM 20469 8413169 YP_003179344.1 CDS Apar_0322 NC_013203.1 369447 370364 D KEGG: sek:SSPA2915 possible carbohydrate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 369447..370364 Atopobium parvulum DSM 20469 8413170 YP_003179345.1 CDS Apar_0323 NC_013203.1 370591 371388 D PFAM: protein of unknown function DUF28; KEGG: jan:Jann_3380 hypothetical protein; hypothetical protein 370591..371388 Atopobium parvulum DSM 20469 8413171 YP_003179346.1 CDS Apar_0324 NC_013203.1 371955 372719 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: hap:HAPS_0195 transcriptional repressor AgaR/DNA-binding transcriptional dual regulator; DeoR family transcriptional regulator complement(371955..372719) Atopobium parvulum DSM 20469 8413172 YP_003179347.1 CDS Apar_0325 NC_013203.1 373372 373830 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: pin:Ping_2057 putative PTS IIA-like nitrogen- regulatory protein PtsN; putative PTS IIA-like nitrogen-regulatory protein PtsN 373372..373830 Atopobium parvulum DSM 20469 8413173 YP_003179348.1 CDS ulaA NC_013203.1 373933 375444 D membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 373933..375444 Atopobium parvulum DSM 20469 8413174 YP_003179349.1 CDS Apar_0327 NC_013203.1 375610 375918 D PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: vsa:VSAL_II0823 PTS system, lactose/cellobiose specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB 375610..375918 Atopobium parvulum DSM 20469 8413175 YP_003179350.1 CDS Apar_0328 NC_013203.1 375948 377003 D PFAM: FG-GAP repeat protein; FG-GAP repeat-containing protein 375948..377003 Atopobium parvulum DSM 20469 8413176 YP_003179351.1 CDS Apar_0329 NC_013203.1 377127 378245 D KEGG: efe:EFER_4245 putative L-ascorbate 6- phosphate lactonase; putative L-ascorbate 6-phosphate lactonase 377127..378245 Atopobium parvulum DSM 20469 8413177 YP_003179352.1 CDS araD NC_013203.1 378258 378959 D catalyzes the formation of D-xylulose 5-phosphate from L-ribulose 5-phosphate in the L-arabinose and L-ascorbate degradation pathways; L-ribulose-5-phosphate 4-epimerase 378258..378959 Atopobium parvulum DSM 20469 8413178 YP_003179353.1 CDS Apar_0331 NC_013203.1 379035 379883 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 379035..379883 Atopobium parvulum DSM 20469 8413179 YP_003179354.1 CDS Apar_0332 NC_013203.1 380016 380696 D KEGG: acp:A2cp1_4211 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 380016..380696 Atopobium parvulum DSM 20469 8413180 YP_003179355.1 CDS Apar_0333 NC_013203.1 380810 381739 D PFAM: Transketolase domain protein; KEGG: gme:Gmet_0551 transketolase subunit A; transketolase 380810..381739 Atopobium parvulum DSM 20469 8413181 YP_003179356.1 CDS Apar_0334 NC_013203.1 381732 382658 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: gbm:Gbem_0280 transketolase central region; transketolase 381732..382658 Atopobium parvulum DSM 20469 8413182 YP_003179357.1 CDS Apar_0335 NC_013203.1 382706 383611 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcb:BCB4264_A1013 transcriptional regulator, XRE family; helix-turn-helix domain-containing protein 382706..383611 Atopobium parvulum DSM 20469 8413183 YP_003179358.1 CDS Apar_0336 NC_013203.1 383842 385467 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcz:BCZK1718 multidrug ABC transporter, ATP- binding protein; ABC transporter-like protein 383842..385467 Atopobium parvulum DSM 20469 8413184 YP_003179359.1 CDS Apar_0337 NC_013203.1 385625 387028 R TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dol:Dole_0317 glutamate synthase (NADPH), homotetrameric; glutamate synthase (NADPH), homotetrameric complement(385625..387028) Atopobium parvulum DSM 20469 8413185 YP_003179360.1 CDS Apar_0338 NC_013203.1 387010 387852 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sat:SYN_00607 ferredoxin--NADP(+) reductase subunit alpha; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(387010..387852) Atopobium parvulum DSM 20469 8413186 YP_003179361.1 CDS Apar_0339 NC_013203.1 388101 388640 R KEGG: rbe:RBE_0861 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(388101..388640) Atopobium parvulum DSM 20469 8413187 YP_003179362.1 CDS Apar_0340 NC_013203.1 388892 389542 D KEGG: spe:Spro_1260 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 388892..389542 Atopobium parvulum DSM 20469 8413188 YP_003179363.1 CDS Apar_0341 NC_013203.1 389645 390748 D hypothetical protein 389645..390748 Atopobium parvulum DSM 20469 8413189 YP_003179364.1 CDS Apar_0342 NC_013203.1 390961 391956 R KEGG: bsu:BSU00510 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(390961..391956) Atopobium parvulum DSM 20469 8413190 YP_003179365.1 CDS Apar_0343 NC_013203.1 391957 393345 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; 4-diphosphocytidyl- 2C-methyl-D-erythritol synthase; KEGG: bha:BH0065 UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(391957..393345) Atopobium parvulum DSM 20469 8413191 YP_003179366.1 CDS Apar_0344 NC_013203.1 393534 394463 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase; peptidoglycan-binding domain 1 protein complement(393534..394463) Atopobium parvulum DSM 20469 8413193 YP_003179367.1 CDS Apar_0345 NC_013203.1 394466 395509 R PFAM: Polyprenyl synthetase; KEGG: son:SO_3653 octaprenyl-diphosphate synthase; polyprenyl synthetase complement(394466..395509) Atopobium parvulum DSM 20469 8413194 YP_003179368.1 CDS Apar_0346 NC_013203.1 395517 396572 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: bce:BC5448 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(395517..396572) Atopobium parvulum DSM 20469 8413195 YP_003179369.1 CDS Apar_0347 NC_013203.1 397494 397805 D hypothetical protein 397494..397805 Atopobium parvulum DSM 20469 8413196 YP_003179370.1 CDS Apar_0348 NC_013203.1 397826 398521 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2210 ABC transporter related protein; ABC transporter-like protein 397826..398521 Atopobium parvulum DSM 20469 8413197 YP_003179371.1 CDS Apar_0349 NC_013203.1 398534 399736 D PFAM: protein of unknown function DUF214; KEGG: lpf:lpl2849 hypothetical protein; hypothetical protein 398534..399736 Atopobium parvulum DSM 20469 8413198 YP_003179372.1 CDS Apar_0350 NC_013203.1 399746 399940 D hypothetical protein 399746..399940 Atopobium parvulum DSM 20469 8413199 YP_003179373.1 CDS Apar_0351 NC_013203.1 400106 403861 R KEGG: dno:DNO_1110 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase complement(400106..403861) Atopobium parvulum DSM 20469 8413200 YP_003179374.1 CDS Apar_0352 NC_013203.1 404047 404841 R PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein; cobalt transport protein complement(404047..404841) Atopobium parvulum DSM 20469 8413201 YP_003179375.1 CDS Apar_0353 NC_013203.1 404831 406717 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfm:VFMJ11_1661 ABC-type cobalt transport system, ATP-binding protein; ABC transporter-like protein complement(404831..406717) Atopobium parvulum DSM 20469 8413202 YP_003179376.1 CDS Apar_0354 NC_013203.1 406710 407297 R KEGG: bca:BCE_1606 hypothetical protein; hypothetical protein complement(406710..407297) Atopobium parvulum DSM 20469 8413203 YP_003179377.1 CDS Apar_0355 NC_013203.1 407711 408637 D KEGG: bcb:BCB4264_A5216 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 407711..408637 Atopobium parvulum DSM 20469 8413204 YP_003179378.1 CDS Apar_0356 NC_013203.1 408660 410042 R PFAM: phosphofructokinase; KEGG: sml:Smlt3887 putative phosphofructokinase; phosphofructokinase complement(408660..410042) Atopobium parvulum DSM 20469 8413205 YP_003179379.1 CDS Apar_0357 NC_013203.1 410361 411704 R PFAM: phosphofructokinase; KEGG: dar:Daro_3204 6-phosphofructokinase; phosphofructokinase complement(410361..411704) Atopobium parvulum DSM 20469 8413206 YP_003179380.1 CDS Apar_0358 NC_013203.1 412330 413619 R KEGG: bcy:Bcer98_3678 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase complement(412330..413619) Atopobium parvulum DSM 20469 8413207 YP_003179381.1 CDS Apar_0359 NC_013203.1 413811 414167 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: dds:Ddes_1828 cupin 2 conserved barrel domain protein; cupin complement(413811..414167) Atopobium parvulum DSM 20469 8413208 YP_003179382.1 CDS Apar_0360 NC_013203.1 414270 416480 R KEGG: bca:BCE_3516 hypothetical protein; superfamily I DNA and RNA helicase-like protein complement(414270..416480) Atopobium parvulum DSM 20469 8413209 YP_003179383.1 CDS Apar_0361 NC_013203.1 416488 417072 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: bsu:BSU28190 GTPase EngB; small GTP-binding protein complement(416488..417072) Atopobium parvulum DSM 20469 8413210 YP_003179384.1 CDS Apar_0362 NC_013203.1 417194 417820 R hypothetical protein complement(417194..417820) Atopobium parvulum DSM 20469 8413211 YP_003179385.1 CDS Apar_0363 NC_013203.1 417817 418476 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU40620 hypothetical protein; ABC transporter-like protein complement(417817..418476) Atopobium parvulum DSM 20469 8413212 YP_003179386.1 CDS Apar_0364 NC_013203.1 418479 419342 R hypothetical protein complement(418479..419342) Atopobium parvulum DSM 20469 8413213 YP_003179387.1 CDS Apar_0365 NC_013203.1 419329 420147 R hypothetical protein complement(419329..420147) Atopobium parvulum DSM 20469 8413214 YP_003179388.1 CDS Apar_0366 NC_013203.1 420144 421031 R KEGG: bcy:Bcer98_0830 hypothetical protein; hypothetical protein complement(420144..421031) Atopobium parvulum DSM 20469 8413215 YP_003179389.1 CDS Apar_0367 NC_013203.1 421041 421784 R hypothetical protein complement(421041..421784) Atopobium parvulum DSM 20469 8413216 YP_003179390.1 CDS Apar_0368 NC_013203.1 422106 423020 R PFAM: regulatory protein LysR; KEGG: bba:Bd2619 LysR family transcriptional regulator; LysR family transcriptional regulator complement(422106..423020) Atopobium parvulum DSM 20469 8413217 YP_003179391.1 CDS pyrE NC_013203.1 423054 423734 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(423054..423734) Atopobium parvulum DSM 20469 8413218 YP_003179392.1 CDS asnC NC_013203.1 423977 425380 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 423977..425380 Atopobium parvulum DSM 20469 8413219 YP_003179393.1 CDS Apar_0371 NC_013203.1 425653 426993 D PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA; putative phosphohistidine phosphatase, SixA 425653..426993 Atopobium parvulum DSM 20469 8413220 YP_003179394.1 CDS Apar_0372 NC_013203.1 427063 428343 D KEGG: dds:Ddes_1040 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 427063..428343 Atopobium parvulum DSM 20469 8413221 YP_003179395.1 CDS Apar_0373 NC_013203.1 428482 429954 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: MATE efflux family protein; MATE efflux family protein complement(428482..429954) Atopobium parvulum DSM 20469 8413222 YP_003179396.1 CDS Apar_0374 NC_013203.1 430154 431311 D hypothetical protein 430154..431311 Atopobium parvulum DSM 20469 8413223 YP_003179397.1 CDS Apar_0375 NC_013203.1 431402 432847 R KEGG: bcr:BCAH187_A4839 Xaa-His dipeptidase; TIGRFAM: dipeptidase; PFAM: peptidase M20; dipeptidase complement(431402..432847) Atopobium parvulum DSM 20469 8413224 YP_003179398.1 CDS Apar_0376 NC_013203.1 432991 433512 D hypothetical protein 432991..433512 Atopobium parvulum DSM 20469 8413225 YP_003179399.1 CDS Apar_0377 NC_013203.1 433560 436952 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: pfo:Pfl01_2215 hypothetical protein; ABC transporter-like protein 433560..436952 Atopobium parvulum DSM 20469 8413226 YP_003179400.1 CDS Apar_0378 NC_013203.1 437076 440108 R PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: predicted protein; K06972; peptidase M16C associated domain-containing protein complement(437076..440108) Atopobium parvulum DSM 20469 8413227 YP_003179401.1 CDS Apar_0379 NC_013203.1 440259 441224 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ent:Ent638_0033 carboxylate/amino acid/amine transporter; hypothetical protein 440259..441224 Atopobium parvulum DSM 20469 8413228 YP_003179402.1 CDS Apar_0380 NC_013203.1 441371 442483 R KEGG: bsu:BSU34800 hypothetical protein; hypothetical protein complement(441371..442483) Atopobium parvulum DSM 20469 8413229 YP_003179403.1 CDS Apar_0381 NC_013203.1 442739 443671 D PFAM: Bacitracin resistance protein BacA; KEGG: rme:Rmet_2705 undecaprenyl pyrophosphate phosphatase; undecaprenyl-diphosphatase 442739..443671 Atopobium parvulum DSM 20469 8413230 YP_003179404.1 CDS Apar_0382 NC_013203.1 443825 446263 D PFAM: UvrD/REP helicase; KEGG: bcr:BCAH187_A0377 ATP-dependent DNA helicase PcrA; UvrD/REP helicase 443825..446263 Atopobium parvulum DSM 20469 8413231 YP_003179405.1 CDS Apar_0383 NC_013203.1 446266 447048 D PFAM: MscS Mechanosensitive ion channel; KEGG: pha:PSHAa0396 mechanosensitive channel protein; mechanosensitive ion channel MscS 446266..447048 Atopobium parvulum DSM 20469 8413232 YP_003179406.1 CDS Apar_0384 NC_013203.1 447050 447748 D PFAM: purine or other phosphorylase family 1; KEGG: bha:BH3238 5'-methylthioadenosine/S- adenosylhomocysteine nuclosidase; Adenosylhomocysteine nucleosidase 447050..447748 Atopobium parvulum DSM 20469 8413233 YP_003179407.1 CDS Apar_0385 NC_013203.1 447899 448948 D PFAM: phosphate transporter; KEGG: sfu:Sfum_2275 phosphate transporter; phosphate transporter 447899..448948 Atopobium parvulum DSM 20469 8413234 YP_003179408.1 CDS Apar_0386 NC_013203.1 449008 449628 D PFAM: protein of unknown function DUF47; KEGG: glo:Glov_0586 protein of unknown function DUF47; hypothetical protein 449008..449628 Atopobium parvulum DSM 20469 8413235 YP_003179409.1 CDS Apar_0387 NC_013203.1 449752 450447 D hypothetical protein 449752..450447 Atopobium parvulum DSM 20469 8413236 YP_003179410.1 CDS Apar_0388 NC_013203.1 450440 450682 D hypothetical protein 450440..450682 Atopobium parvulum DSM 20469 8413237 YP_003179411.1 CDS Apar_0389 NC_013203.1 450696 451184 D PFAM: protein of unknown function DUF322; KEGG: bha:BH2786 hypothetical protein; hypothetical protein 450696..451184 Atopobium parvulum DSM 20469 8413238 YP_003179412.1 CDS Apar_0390 NC_013203.1 451397 452161 D PFAM: aminoglycoside phosphotransferase; KEGG: bce:BC2521 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 451397..452161 Atopobium parvulum DSM 20469 8413239 YP_003179413.1 CDS Apar_0391 NC_013203.1 452514 453287 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: prw:PsycPRwf_1445 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 452514..453287 Atopobium parvulum DSM 20469 8413240 YP_003179414.1 CDS Apar_0392 NC_013203.1 453323 454378 D PFAM: NMT1/THI5 like domain protein; KEGG: prw:PsycPRwf_1444 NMT1/THI5-like protein; NMT1/THI5 like domain-containing protein 453323..454378 Atopobium parvulum DSM 20469 8413241 YP_003179415.1 CDS Apar_0393 NC_013203.1 454410 455255 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: prw:PsycPRwf_1443 ABC transporter related; ABC transporter-like protein 454410..455255 Atopobium parvulum DSM 20469 8413242 YP_003179416.1 CDS Apar_0394 NC_013203.1 455391 456812 R PFAM: peptidase M18 aminopeptidase I; KEGG: ppr:PBPRB1552 putative aminopeptidase 1; peptidase M18 aminopeptidase I complement(455391..456812) Atopobium parvulum DSM 20469 8413243 YP_003179417.1 CDS Apar_0395 NC_013203.1 456914 457858 R KEGG: hypothetical protein LOC100021983; hypothetical protein complement(456914..457858) Atopobium parvulum DSM 20469 8413244 YP_003179418.1 CDS Apar_0396 NC_013203.1 458165 459037 D KEGG: bcy:Bcer98_3856 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 458165..459037 Atopobium parvulum DSM 20469 8413245 YP_003179419.1 CDS Apar_0397 NC_013203.1 459292 459744 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pat:Patl_1237 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator complement(459292..459744) Atopobium parvulum DSM 20469 8413246 YP_003179420.1 CDS Apar_0398 NC_013203.1 459746 460273 R TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lpc:LPC_2694 nitrogen fixation protein (Fe-S cluster formation) NifU; NifU family SUF system FeS assembly protein complement(459746..460273) Atopobium parvulum DSM 20469 8413247 YP_003179421.1 CDS Apar_0399 NC_013203.1 460274 461563 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: bcy:Bcer98_3577 SufS subfamily cysteine desulfurase; SufS subfamily cysteine desulfurase complement(460274..461563) Atopobium parvulum DSM 20469 8413248 YP_003179422.1 CDS Apar_0400 NC_013203.1 461563 462702 R PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein; SufBD protein complement(461563..462702) Atopobium parvulum DSM 20469 8413249 YP_003179423.1 CDS Apar_0401 NC_013203.1 462702 464120 R TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcy:Bcer98_3575 FeS assembly protein SufB; FeS assembly protein SufB complement(462702..464120) Atopobium parvulum DSM 20469 8413250 YP_003179424.1 CDS Apar_0402 NC_013203.1 464120 464887 R TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: oca:OCAR_6000 FeS assembly ATPase SufC; FeS assembly ATPase SufC complement(464120..464887) Atopobium parvulum DSM 20469 8413251 YP_003179425.1 CDS Apar_0403 NC_013203.1 465219 466529 D KEGG: ade:Adeh_1510 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 465219..466529 Atopobium parvulum DSM 20469 8413252 YP_003179426.1 CDS Apar_0404 NC_013203.1 466619 467116 D KEGG: apa:APP7_1560 hypothetical protein; hypothetical protein 466619..467116 Atopobium parvulum DSM 20469 8413253 YP_003179427.1 CDS Apar_0405 NC_013203.1 467169 467987 D PFAM: Integrase catalytic region; KEGG: apj:APJL_1896 transposase; integrase catalytic subunit 467169..467987 Atopobium parvulum DSM 20469 8413254 YP_003179428.1 CDS Apar_0406 NC_013203.1 468232 470397 D KEGG: bcy:Bcer98_1389 bacteriocin-associated integral membrane protein; hypothetical protein 468232..470397 Atopobium parvulum DSM 20469 8413255 YP_003179429.1 CDS Apar_0407 NC_013203.1 470400 471053 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0281 ABC transporter ATP-binding protein; ABC transporter-like protein 470400..471053 Atopobium parvulum DSM 20469 8413256 YP_003179430.1 CDS Apar_0408 NC_013203.1 471129 472562 R PFAM: Na+/H+ antiporter NhaC; KEGG: sit:TM1040_2159 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC complement(471129..472562) Atopobium parvulum DSM 20469 8413257 YP_003179431.1 CDS Apar_0409 NC_013203.1 472679 473620 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: plu:plu0110 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 472679..473620 Atopobium parvulum DSM 20469 8413258 YP_003179432.1 CDS Apar_0410 NC_013203.1 473622 474362 D PFAM: pseudouridine synthase; KEGG: bcy:Bcer98_1014 RluA family pseudouridine synthase; pseudouridine synthase 473622..474362 Atopobium parvulum DSM 20469 8413259 YP_003179433.1 CDS Apar_0411 NC_013203.1 474447 476042 D PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2379 hydrogenase; ferredoxin hydrogenase 474447..476042 Atopobium parvulum DSM 20469 8413260 YP_003179434.1 CDS Apar_0412 NC_013203.1 476189 476497 R hypothetical protein complement(476189..476497) Atopobium parvulum DSM 20469 8413261 YP_003179435.1 CDS Apar_0413 NC_013203.1 476774 478741 D PFAM: Glucan-binding protein C; KEGG: similar to GTPase, IMAP family member 4; Glucan-binding protein C 476774..478741 Atopobium parvulum DSM 20469 8413262 YP_003179436.1 CDS Apar_0414 NC_013203.1 478840 479493 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dal:Dalk_1233 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase complement(478840..479493) Atopobium parvulum DSM 20469 8413263 YP_003179437.1 CDS Apar_0415 NC_013203.1 479696 479941 D hypothetical protein 479696..479941 Atopobium parvulum DSM 20469 8413264 YP_003179438.1 CDS Apar_0416 NC_013203.1 479938 481440 D KEGG: hypothetical protein; Dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein 479938..481440 Atopobium parvulum DSM 20469 8413265 YP_003179439.1 CDS Apar_0417 NC_013203.1 481701 482939 D SMART: serine/threonine protein kinase; KEGG: bcr:BCAH187_A4758 serine/threonine protein kinase, putative; serine/threonine protein kinase 481701..482939 Atopobium parvulum DSM 20469 8413266 YP_003179440.1 CDS Apar_0418 NC_013203.1 482941 483843 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: prw:PsycPRwf_0606 ABC transporter related; ABC transporter-like protein 482941..483843 Atopobium parvulum DSM 20469 8413267 YP_003179441.1 CDS Apar_0419 NC_013203.1 483833 484621 D PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0632 ABC-2 type transporter, NodJ family; ABC-2 type transporter 483833..484621 Atopobium parvulum DSM 20469 8413268 YP_003179442.1 CDS Apar_0420 NC_013203.1 484803 486629 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dal:Dalk_2756 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 484803..486629 Atopobium parvulum DSM 20469 8413269 YP_003179443.1 CDS Apar_0421 NC_013203.1 486675 488477 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2400 ABC transporter, permease/ATP-binding protein; ABC transporter-like protein 486675..488477 Atopobium parvulum DSM 20469 8413270 YP_003179444.1 CDS Apar_0422 NC_013203.1 488470 490290 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcy:Bcer98_1782 ABC transporter-related protein; ABC transporter-like protein 488470..490290 Atopobium parvulum DSM 20469 8413271 YP_003179445.1 CDS Apar_0423 NC_013203.1 490302 490673 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: bph:Bphy_1762 CrcB protein; CrcB protein 490302..490673 Atopobium parvulum DSM 20469 8413272 YP_003179446.1 CDS Apar_0424 NC_013203.1 490778 491623 D PFAM: transcription activator effector binding; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bce:BC4832 AraC family transcriptional regulator; AraC family transcriptional regulator 490778..491623 Atopobium parvulum DSM 20469 8413273 YP_003179447.1 CDS Apar_0425 NC_013203.1 491653 493110 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BSU02670 drug-export protein; EmrB/QacA subfamily drug resistance transporter complement(491653..493110) Atopobium parvulum DSM 20469 8413274 YP_003179448.1 CDS gpmA NC_013203.1 493285 494046 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(493285..494046) Atopobium parvulum DSM 20469 8413275 YP_003179449.1 CDS Apar_0427 NC_013203.1 494347 494550 D hypothetical protein 494347..494550 Atopobium parvulum DSM 20469 8413276 YP_003179450.1 CDS Apar_0428 NC_013203.1 494679 495992 D PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase; glutamine synthetase 494679..495992 Atopobium parvulum DSM 20469 8413277 YP_003179451.1 CDS Apar_0429 NC_013203.1 496355 497206 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: efe:EFER_1174 cystine transporter subunit ; periplasmic-binding component of ABC superfamily; family 3 extracellular solute-binding protein 496355..497206 Atopobium parvulum DSM 20469 8413278 YP_003179452.1 CDS Apar_0430 NC_013203.1 497392 498741 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1983 glutamine ABC-transporter, permease protein (GlnP); polar amino acid ABC transporter inner membrane subunit 497392..498741 Atopobium parvulum DSM 20469 8413279 YP_003179453.1 CDS Apar_0431 NC_013203.1 498741 499601 D PFAM: ABC transporter related; SMC domain protein; SMART: AAA ATPase; KEGG: rsh:Rsph17029_3103 ABC transporter related; ABC transporter-like protein 498741..499601 Atopobium parvulum DSM 20469 8413280 YP_003179454.1 CDS Apar_0432 NC_013203.1 499757 500431 D PFAM: transcriptional regulator domain protein; KEGG: glo:Glov_0588 two component transcriptional regulator, winged helix family; putative winged helix family two component transcriptional regulator 499757..500431 Atopobium parvulum DSM 20469 8413281 YP_003179455.1 CDS Apar_0433 NC_013203.1 500625 502040 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: dar:Daro_3371 peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF; peptidase S1 and S6 chymotrypsin/Hap 500625..502040 Atopobium parvulum DSM 20469 8413282 YP_003179456.1 CDS Apar_0434 NC_013203.1 502117 503466 D PFAM: protein of unknown function DUF195; KEGG: bte:BTH_I1701 RmuC domain-containing protein; hypothetical protein 502117..503466 Atopobium parvulum DSM 20469 8413283 YP_003179457.1 CDS Apar_0435 NC_013203.1 503556 504542 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU02750 Na+ ABC transporter ATP-binding protein; ABC transporter-like protein 503556..504542 Atopobium parvulum DSM 20469 8413284 YP_003179458.1 CDS Apar_0436 NC_013203.1 504526 505290 D PFAM: ABC-2 type transporter; KEGG: abc:ACICU_01702 ABC-type multidrug transport system, permease component; ABC-2 type transporter 504526..505290 Atopobium parvulum DSM 20469 8413285 YP_003179459.1 CDS Apar_0437 NC_013203.1 505293 506078 D KEGG: sus:Acid_0603 ABC-2 type transporter; hypothetical protein 505293..506078 Atopobium parvulum DSM 20469 8413286 YP_003179460.1 CDS Apar_0438 NC_013203.1 506157 506480 D PFAM: protein of unknown function DUF156; KEGG: bsu:BSU33520 hypothetical protein; hypothetical protein 506157..506480 Atopobium parvulum DSM 20469 8413287 YP_003179461.1 CDS Apar_0439 NC_013203.1 506490 509093 D TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: abu:Abu_0480 heavy-metal transporting P-type ATPase; heavy metal translocating P-type ATPase 506490..509093 Atopobium parvulum DSM 20469 8413288 YP_003179462.1 CDS Apar_0440 NC_013203.1 509083 510081 R KEGG: hdu:HD0377 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(509083..510081) Atopobium parvulum DSM 20469 8413289 YP_003179463.1 CDS Apar_0441 NC_013203.1 510127 511161 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: eum:ECUMN_2431 putative (phospho)hydrolase; ADP-ribosylation/Crystallin J1 complement(510127..511161) Atopobium parvulum DSM 20469 8413290 YP_003179464.1 CDS Apar_0442 NC_013203.1 511593 512555 D hypothetical protein 511593..512555 Atopobium parvulum DSM 20469 8413291 YP_003179465.1 CDS Apar_0443 NC_013203.1 512562 513341 D PFAM: metallophosphoesterase; KEGG: bbt:BBta_1036 putative serine/threonine protein phosphatase; metallophosphoesterase 512562..513341 Atopobium parvulum DSM 20469 8413292 YP_003179466.1 CDS Apar_0444 NC_013203.1 513344 513901 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: cff:CFF8240_1263 Mug G:T/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase 513344..513901 Atopobium parvulum DSM 20469 8413293 YP_003179467.1 CDS Apar_0445 NC_013203.1 514106 514759 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ccv:CCV52592_0287 ABC transporter membrane- spanning permease - glutamine transport; polar amino acid ABC transporter inner membrane subunit 514106..514759 Atopobium parvulum DSM 20469 8413294 YP_003179468.1 CDS Apar_0446 NC_013203.1 514746 515423 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: asu:Asuc_1950 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 514746..515423 Atopobium parvulum DSM 20469 8413295 YP_003179469.1 CDS Apar_0447 NC_013203.1 515416 516171 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hhe:HH0347 hypothetical protein; ABC transporter-like protein 515416..516171 Atopobium parvulum DSM 20469 8413296 YP_003179470.1 CDS Apar_0448 NC_013203.1 516230 517126 D PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: ccv:CCV52592_0290 acriflavine resistance protein; family 3 extracellular solute-binding protein 516230..517126 Atopobium parvulum DSM 20469 8413297 YP_003179471.1 CDS Apar_0449 NC_013203.1 517328 518323 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 517328..518323 Atopobium parvulum DSM 20469 8413298 YP_003179472.1 CDS Apar_0450 NC_013203.1 518470 519558 D PFAM: lipolytic protein G-D-S-L family; KEGG: ftn:FTN_0894 GDSL-like lipolytic enzyme; G-D-S-L family lipolytic protein 518470..519558 Atopobium parvulum DSM 20469 8413299 YP_003179473.1 CDS Apar_0451 NC_013203.1 519657 520898 D KEGG: dol:Dole_1124 metal-dependent phosphohydrolase; metal-dependent phosphohydrolase 519657..520898 Atopobium parvulum DSM 20469 8413300 YP_003179474.1 CDS Apar_0452 NC_013203.1 521005 522336 D PFAM: AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: gsu:GSU2067 recombination factor protein RarA; ATPase AAA 521005..522336 Atopobium parvulum DSM 20469 8413301 YP_003179475.1 CDS Apar_0453 NC_013203.1 522428 523039 D KEGG: similar to Adipophilin (Adipose differentiation-related protein) (ADRP); hypothetical protein 522428..523039 Atopobium parvulum DSM 20469 8413302 YP_003179476.1 CDS Apar_0454 NC_013203.1 523046 523429 D hypothetical protein 523046..523429 Atopobium parvulum DSM 20469 8413303 YP_003179477.1 CDS Apar_0455 NC_013203.1 523422 524276 D TIGRFAM: RNA polymerase sigma-70 factor, sigma- B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB; sigma-B/F/G subfamily RNA polymerase sigma-28 factor 523422..524276 Atopobium parvulum DSM 20469 8413304 YP_003179478.1 CDS Apar_0456 NC_013203.1 524276 525658 D PFAM: protein of unknown function UPF0118; KEGG: bsu:BSU27420 hypothetical protein; hypothetical protein 524276..525658 Atopobium parvulum DSM 20469 8413305 YP_003179479.1 CDS Apar_0457 NC_013203.1 525684 528329 D KEGG: rme:Rmet_0831 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 525684..528329 Atopobium parvulum DSM 20469 8413306 YP_003179480.1 CDS Apar_0458 NC_013203.1 528333 528755 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: afw:Anae109_2535 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 528333..528755 Atopobium parvulum DSM 20469 8413307 YP_003179481.1 CDS Apar_0459 NC_013203.1 528756 530111 D PFAM: aminodeoxychorismate lyase; KEGG: gme:Gmet_3021 aminodeoxychorismate lyase; aminodeoxychorismate lyase 528756..530111 Atopobium parvulum DSM 20469 8413308 YP_003179482.1 CDS Apar_0460 NC_013203.1 530123 530620 D TIGRFAM: HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: bcy:Bcer98_3062 HAD family phosphatase; HAD superfamily (subfamily IIIA) phosphatase 530123..530620 Atopobium parvulum DSM 20469 8413309 YP_003179483.1 CDS Apar_0461 NC_013203.1 530685 531233 D PFAM: shikimate kinase; KEGG: asu:Asuc_0264 shikimate kinase; shikimate kinase 530685..531233 Atopobium parvulum DSM 20469 8413310 YP_003179484.1 CDS Apar_0462 NC_013203.1 531230 532366 D PFAM: 3-dehydroquinate synthase; KEGG: ccs:CCNA_03104 3-dehydroquinate synthase; 3-dehydroquinate synthase 531230..532366 Atopobium parvulum DSM 20469 8413311 YP_003179485.1 CDS Apar_0463 NC_013203.1 532459 533583 D PFAM: peptidase M24; creatinase; KEGG: bcb:BCB4264_A4308 X-Pro dipeptidase; peptidase M24 532459..533583 Atopobium parvulum DSM 20469 8413312 YP_003179486.1 CDS Apar_0464 NC_013203.1 533833 534831 D PFAM: PTS system sorbose subfamily IIB component; PTS system fructose subfamily IIA component; KEGG: ypi:YpsIP31758_2368 PTS system mannose/fructose/sorbose family IIB subunit; Protein-N(pi)-phosphohistidine--sugar phosphotransferase 533833..534831 Atopobium parvulum DSM 20469 8413313 YP_003179487.1 CDS Apar_0465 NC_013203.1 534848 535663 D PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: stm:STM1831 mannose-specific enzyme IIC; PTS sorbose-specific transporter subunit IIC 534848..535663 Atopobium parvulum DSM 20469 8413314 YP_003179488.1 CDS Apar_0466 NC_013203.1 535685 536602 D TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: asu:Asuc_0288 PTS system mannose/fructose/sorbose family IID subunit; PTS system mannose/fructose/sorbose family transporter subunit IID 535685..536602 Atopobium parvulum DSM 20469 8413315 YP_003179489.1 CDS Apar_0467 NC_013203.1 536689 537096 D PFAM: protein of unknown function DUF956; hypothetical protein 536689..537096 Atopobium parvulum DSM 20469 8413316 YP_003179490.1 CDS Apar_0468 NC_013203.1 537233 537796 D TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: aeh:Mlg_0684 translation elongation factor P (EF-P); translation elongation factor P 537233..537796 Atopobium parvulum DSM 20469 8413317 YP_003179491.1 CDS Apar_0469 NC_013203.1 537878 538243 D KEGG: bsu:BSU15830 hypothetical protein; hypothetical protein 537878..538243 Atopobium parvulum DSM 20469 8413318 YP_003179492.1 CDS Apar_0470 NC_013203.1 538246 538749 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mgm:Mmc1_0164 NusB antitermination factor; NusB antitermination factor 538246..538749 Atopobium parvulum DSM 20469 8413319 YP_003179493.1 CDS Apar_0471 NC_013203.1 538752 539090 D hypothetical protein 538752..539090 Atopobium parvulum DSM 20469 8413320 YP_003179494.1 CDS Apar_0472 NC_013203.1 539090 539896 D TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pca:Pcar_1058 rRNA methylase; hemolysin A 539090..539896 Atopobium parvulum DSM 20469 8413321 YP_003179495.1 CDS Apar_0473 NC_013203.1 540015 540872 D PFAM: ATP-NAD/AcoX kinase; KEGG: nmu:Nmul_A2422 NAD(+) kinase; ATP-NAD/AcoX kinase 540015..540872 Atopobium parvulum DSM 20469 8413322 YP_003179496.1 CDS Apar_0474 NC_013203.1 540884 542515 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: dal:Dalk_3718 DNA repair protein RecN; DNA repair protein RecN 540884..542515 Atopobium parvulum DSM 20469 8413323 YP_003179497.1 CDS pyrG NC_013203.1 542650 544299 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 542650..544299 Atopobium parvulum DSM 20469 8413324 YP_003179498.1 CDS Apar_0476 NC_013203.1 544328 545236 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bsu:BSU23510 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD 544328..545236 Atopobium parvulum DSM 20469 8413325 YP_003179499.1 CDS Apar_0477 NC_013203.1 545644 546078 D PFAM: protein of unknown function UPF0040; KEGG: cvi:CV_4352 hypothetical protein; hypothetical protein 545644..546078 Atopobium parvulum DSM 20469 8413326 YP_003179500.1 CDS Apar_0478 NC_013203.1 546094 547077 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: gsu:GSU3077 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 546094..547077 Atopobium parvulum DSM 20469 8413327 YP_003179501.1 CDS Apar_0479 NC_013203.1 547136 547555 D hypothetical protein 547136..547555 Atopobium parvulum DSM 20469 8413328 YP_003179502.1 CDS Apar_0480 NC_013203.1 547647 549371 D PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: aba:Acid345_3635 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 547647..549371 Atopobium parvulum DSM 20469 8413329 YP_003179503.1 CDS Apar_0481 NC_013203.1 549380 550816 D TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bsu:BSU04570 UDP-N-acetylmuramoylalanyl-D- glutamyl-2,6-diaminopimelate-D-alanyl-D -alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanyl ligase 549380..550816 Atopobium parvulum DSM 20469 8413330 YP_003179504.1 CDS Apar_0482 NC_013203.1 550816 551847 D KEGG: bcy:Bcer98_2563 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase 550816..551847 Atopobium parvulum DSM 20469 8413331 YP_003179505.1 CDS Apar_0483 NC_013203.1 551877 553280 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: aba:Acid345_3631 UDP-N-acetylmuramoylalanine-- D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 551877..553280 Atopobium parvulum DSM 20469 8413332 YP_003179506.1 CDS Apar_0484 NC_013203.1 553280 554809 D PFAM: cell cycle protein; KEGG: bcy:Bcer98_2561 stage V sporulation protein E; cell cycle protein 553280..554809 Atopobium parvulum DSM 20469 8413333 YP_003179507.1 CDS Apar_0485 NC_013203.1 554833 555966 D KEGG: bha:BH2565 N-acetylglucosaminyl transferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 554833..555966 Atopobium parvulum DSM 20469 8413334 YP_003179508.1 CDS Apar_0486 NC_013203.1 555994 557463 D TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: UDP-N-acetylmuramate/alanine ligase ; K01924 UDP-N-acetylmuramate--alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 555994..557463 Atopobium parvulum DSM 20469 8413335 YP_003179509.1 CDS Apar_0487 NC_013203.1 557474 558388 D KEGG: bha:BH2564 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 557474..558388 Atopobium parvulum DSM 20469 8413336 YP_003179510.1 CDS Apar_0488 NC_013203.1 558396 559484 D PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: ppd:Ppro_3285 polypeptide-transport- associated domain-containing protein; Polypeptide-transport-associated domain-containing protein FtsQ-type 558396..559484 Atopobium parvulum DSM 20469 8413337 YP_003179511.1 CDS Apar_0489 NC_013203.1 559732 560868 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bcy:Bcer98_2555 cell division protein FtsZ; cell division protein FtsZ 559732..560868 Atopobium parvulum DSM 20469 8413338 YP_003179512.1 CDS Apar_0490 NC_013203.1 560916 561680 D PFAM: protein of unknown function DUF152; KEGG: mxa:MXAN_2999 conserved hypothetical protein TIGR00726; hypothetical protein 560916..561680 Atopobium parvulum DSM 20469 8413339 YP_003179513.1 CDS Apar_0491 NC_013203.1 561741 562475 D PFAM: alanine racemase domain protein; KEGG: bba:Bd0466 hypothetical protein; alanine racemase domain-containing protein 561741..562475 Atopobium parvulum DSM 20469 8413340 YP_003179514.1 CDS Apar_0492 NC_013203.1 562536 563216 D PFAM: protein of unknown function DUF552; KEGG: bha:BH2549 hypothetical protein; hypothetical protein 562536..563216 Atopobium parvulum DSM 20469 8413341 YP_003179515.1 CDS Apar_0493 NC_013203.1 563229 563507 D PFAM: protein of unknown function YGGT; KEGG: bcy:Bcer98_2547 protein of unknown function YGGT; hypothetical protein 563229..563507 Atopobium parvulum DSM 20469 8413342 YP_003179516.1 CDS Apar_0494 NC_013203.1 563587 564222 D PFAM: DivIVA family protein; KEGG: bha:BH2546 cell-division initiation protein (septum placement); DivIVA family protein 563587..564222 Atopobium parvulum DSM 20469 8413343 YP_003179517.1 CDS Apar_0495 NC_013203.1 564299 565339 R KEGG: abb:ABBFA_000396 hypothetical protein; hypothetical protein complement(564299..565339) Atopobium parvulum DSM 20469 8413344 YP_003179518.1 CDS Apar_0496 NC_013203.1 565311 566720 R KEGG: gme:Gmet_0124 radical SAM family protein; radical SAM family protein complement(565311..566720) Atopobium parvulum DSM 20469 8413345 YP_003179519.1 CDS Apar_0497 NC_013203.1 566845 568323 D KEGG: scl:sce1090 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 566845..568323 Atopobium parvulum DSM 20469 8413346 YP_003179520.1 CDS Apar_0498 NC_013203.1 568367 570547 R TIGRFAM: YhgE/Pip C-terminal domain protein; YhgE/Pip N-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter; YhgE/Pip C-terminal domain-containing protein complement(568367..570547) Atopobium parvulum DSM 20469 8413347 YP_003179521.1 CDS Apar_0499 NC_013203.1 570549 573179 R TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: bcy:Bcer98_0357 ABC-2 type transporter; YhgE/Pip N-terminal domain-containing protein complement(570549..573179) Atopobium parvulum DSM 20469 8413348 YP_003179522.1 CDS Apar_0500 NC_013203.1 573405 574130 D PFAM: regulatory protein TetR; KEGG: afw:Anae109_2507 TetR family transcriptional regulator; TetR family transcriptional regulator 573405..574130 Atopobium parvulum DSM 20469 8413349 YP_003179523.1 CDS Apar_0501 NC_013203.1 574248 575510 D KEGG: bcr:BCAH187_A4904 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 574248..575510 Atopobium parvulum DSM 20469 8413350 YP_003179524.1 CDS Apar_0502 NC_013203.1 575516 577702 R hypothetical protein complement(575516..577702) Atopobium parvulum DSM 20469 8413351 YP_003179525.1 CDS Apar_0503 NC_013203.1 578144 579793 R TIGRFAM: L-serine dehydratase, iron-sulfur- dependent, alpha subunit; L-serine dehydratase, iron- sulfur-dependent, beta subunit; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; amino acid-binding ACT domain protein; KEGG: bha:BH2496 L-serine dehydratase alpha subunit; L-serine dehydratase, iron-sulfur-dependent subunit alpha complement(578144..579793) Atopobium parvulum DSM 20469 8413354 YP_003179526.1 CDS Apar_0504 NC_013203.1 579927 581441 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: GTS2; non-discriminatory gln-glu-trna synthetase; K01885 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase complement(579927..581441) Atopobium parvulum DSM 20469 8413355 YP_003179527.1 CDS Apar_0505 NC_013203.1 581534 582502 R hypothetical protein complement(581534..582502) Atopobium parvulum DSM 20469 8413356 YP_003179528.1 CDS Apar_0506 NC_013203.1 582659 584017 D catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 582659..584017 Atopobium parvulum DSM 20469 8413357 YP_003179529.1 CDS Apar_0507 NC_013203.1 584091 584846 D KEGG: sfu:Sfum_1332 spermine synthase; spermine synthase 584091..584846 Atopobium parvulum DSM 20469 8413358 YP_003179530.1 CDS Apar_0508 NC_013203.1 585039 586670 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hhe:HH0684 multidrug resistance protein MsbA; ABC transporter-like protein 585039..586670 Atopobium parvulum DSM 20469 8413359 YP_003179531.1 CDS Apar_0509 NC_013203.1 586737 587999 R PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_1701 major facilitator transporter; major facilitator superfamily protein complement(586737..587999) Atopobium parvulum DSM 20469 8413360 YP_003179532.1 CDS Apar_0510 NC_013203.1 588153 589751 R PFAM: Domain of unknown function DUF1858; PAS fold- 4 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: dvm:DvMF_1059 putative PAS/PAC sensor protein; putative PAS/PAC sensor protein complement(588153..589751) Atopobium parvulum DSM 20469 8413361 YP_003179533.1 CDS Apar_0511 NC_013203.1 589911 590189 R TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: sun:SUN_2119 DNA-damage-inducible protein J; RelB/DinJ family addiction module antitoxin complement(589911..590189) Atopobium parvulum DSM 20469 8413362 YP_003179534.1 CDS Apar_0512 NC_013203.1 590308 591483 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bcz:BCZK4801 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase complement(590308..591483) Atopobium parvulum DSM 20469 8413363 YP_003179535.1 CDS Apar_0513 NC_013203.1 591561 592712 D PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class V; KEGG: bsu:BSU31400 hypothetical protein; class I and II aminotransferase 591561..592712 Atopobium parvulum DSM 20469 8413364 YP_003179536.1 CDS Apar_0514 NC_013203.1 592941 594245 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ddcA; Orn/DAP/Arg decarboxylase 2 domain- containing protein; diaminopimelate decarboxylase 592941..594245 Atopobium parvulum DSM 20469 8413365 YP_003179537.1 CDS Apar_0515 NC_013203.1 594261 595154 D KEGG: pap:PSPA7_4387 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 594261..595154 Atopobium parvulum DSM 20469 8413366 YP_003179538.1 CDS Apar_0516 NC_013203.1 595147 595863 D KEGG: nis:NIS_1548 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 595147..595863 Atopobium parvulum DSM 20469 8413367 YP_003179539.1 CDS Apar_0517 NC_013203.1 595918 596619 D PFAM: Tetrahydrodipicolinate succinyltransferase domain protein; transferase hexapeptide repeat containing protein; KEGG: bha:BH2669 tetrahydrodipicolinate succinylase; tetrahydrodipicolinate succinyltransferase domain-containing protein 595918..596619 Atopobium parvulum DSM 20469 8413368 YP_003179540.1 CDS Apar_0518 NC_013203.1 596630 597847 D KEGG: gur:Gura_1716 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 596630..597847 Atopobium parvulum DSM 20469 8413369 YP_003179541.1 CDS Apar_0519 NC_013203.1 598042 601404 D KEGG: bsu:BSU27620 hypothetical protein; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; phosphoesterase DHHA1; SMART: helicase domain protein; DEAD-like helicase; single-stranded-DNA-specific exonuclease RecJ 598042..601404 Atopobium parvulum DSM 20469 8413370 YP_003179542.1 CDS Apar_0520 NC_013203.1 601397 603742 D KEGG: bha:BH1242 GTP pyrophosphokinase (stringent response); TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 601397..603742 Atopobium parvulum DSM 20469 8413371 YP_003179543.1 CDS Apar_0521 NC_013203.1 603735 604511 D PFAM: beta-lactamase domain protein; KEGG: dol:Dole_2072 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 603735..604511 Atopobium parvulum DSM 20469 8413372 YP_003179544.1 CDS Apar_0522 NC_013203.1 604917 605498 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: dde:Dde_2638 translation initiation factor IF- 3; translation initiation factor IF-3 604917..605498 Atopobium parvulum DSM 20469 8413374 YP_003179545.1 CDS Apar_0523 NC_013203.1 605500 605700 D TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: bsu:BSU28860 50S ribosomal protein L35; 50S ribosomal protein L35 605500..605700 Atopobium parvulum DSM 20469 8413375 YP_003179546.1 CDS Apar_0524 NC_013203.1 605742 606101 D TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: ilo:IL1396 50S ribosomal protein L20; 50S ribosomal protein L20 605742..606101 Atopobium parvulum DSM 20469 8413376 YP_003179547.1 CDS Apar_0525 NC_013203.1 606675 607895 R PFAM: glycosyl transferase family 4; KEGG: bcb:BCB4264_A5322 glycosyl transferase, group 4 family protein; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(606675..607895) Atopobium parvulum DSM 20469 8413377 YP_003179548.1 CDS Apar_0526 NC_013203.1 608466 609500 D PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0616 radical SAM domain protein; radical SAM protein 608466..609500 Atopobium parvulum DSM 20469 8413380 YP_003179549.1 CDS Apar_0527 NC_013203.1 609503 609922 D KEGG: oan:Oant_3509 OmpA/MotB domain protein; hypothetical protein 609503..609922 Atopobium parvulum DSM 20469 8413381 YP_003179550.1 CDS Apar_0528 NC_013203.1 609983 611479 D TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: acp:A2cp1_3805 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 609983..611479 Atopobium parvulum DSM 20469 8413382 YP_003179551.1 CDS Apar_0529 NC_013203.1 611551 613395 D KEGG: bha:BH3808 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 611551..613395 Atopobium parvulum DSM 20469 8413383 YP_003179552.1 CDS Apar_0530 NC_013203.1 613726 614406 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family; MarR family transcriptional regulator 613726..614406 Atopobium parvulum DSM 20469 8413384 YP_003179553.1 CDS Apar_0531 NC_013203.1 614647 616752 D KEGG: nis:NIS_1455 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; HMG-I and HMG-Y DNA-binding domain protein; Rho termination factor RNA-binding; SMART: AAA ATPase; Cold shock protein; HMG-I and HMG-Y DNA-binding domain protein; transcription termination factor Rho 614647..616752 Atopobium parvulum DSM 20469 8413385 YP_003179554.1 CDS Apar_0532 NC_013203.1 617114 618496 D KEGG: hypothetical protein; hypothetical protein 617114..618496 Atopobium parvulum DSM 20469 8413386 YP_003179555.1 CDS Apar_0533 NC_013203.1 618688 619869 D PFAM: Extracellular ligand-binding receptor; KEGG: mxa:MXAN_6665 putative branched chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 618688..619869 Atopobium parvulum DSM 20469 8413387 YP_003179556.1 CDS Apar_0534 NC_013203.1 619885 620757 D PFAM: inner-membrane translocator; KEGG: gbm:Gbem_1943 inner-membrane translocator; inner-membrane translocator 619885..620757 Atopobium parvulum DSM 20469 8413388 YP_003179557.1 CDS Apar_0535 NC_013203.1 620768 621973 D PFAM: inner-membrane translocator; KEGG: bba:Bd3387 branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 620768..621973 Atopobium parvulum DSM 20469 8413389 YP_003179558.1 CDS Apar_0536 NC_013203.1 621979 622824 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd3388 branched-chain amino acid transport system; ABC transporter-like protein 621979..622824 Atopobium parvulum DSM 20469 8413390 YP_003179559.1 CDS Apar_0537 NC_013203.1 622824 623573 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_1946 ABC transporter related protein; ABC transporter-like protein 622824..623573 Atopobium parvulum DSM 20469 8413391 YP_003179560.1 CDS Apar_0538 NC_013203.1 623685 624614 R KEGG: sus:Acid_0902 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; homoserine kinase complement(623685..624614) Atopobium parvulum DSM 20469 8413392 YP_003179561.1 CDS Apar_0539 NC_013203.1 624637 626145 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(624637..626145) Atopobium parvulum DSM 20469 8413393 YP_003179562.1 CDS Apar_0540 NC_013203.1 626380 627519 D PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: abu:Abu_0158 homoserine dehydrogenase; Homoserine dehydrogenase 626380..627519 Atopobium parvulum DSM 20469 8413394 YP_003179563.1 CDS Apar_0541 NC_013203.1 627522 628850 D KEGG: bha:BH1500 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 627522..628850 Atopobium parvulum DSM 20469 8413395 YP_003179564.1 CDS Apar_0542 NC_013203.1 628853 629875 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; KEGG: bha:BH2401 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 628853..629875 Atopobium parvulum DSM 20469 8413396 YP_003179565.1 CDS Apar_0543 NC_013203.1 630294 630713 D KEGG: pmu:PM1699 hypothetical protein; hypothetical protein 630294..630713 Atopobium parvulum DSM 20469 8413397 YP_003179566.1 CDS Apar_0544 NC_013203.1 630726 631343 D KEGG: vei:Veis_2445 hypothetical protein; hypothetical protein 630726..631343 Atopobium parvulum DSM 20469 8413398 YP_003179567.1 CDS Apar_0545 NC_013203.1 631452 631616 D hypothetical protein 631452..631616 Atopobium parvulum DSM 20469 8413399 YP_003179568.1 CDS Apar_0546 NC_013203.1 632060 633271 D PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; integrase family protein 632060..633271 Atopobium parvulum DSM 20469 8413400 YP_003179569.1 CDS Apar_0547 NC_013203.1 633282 633824 R hypothetical protein complement(633282..633824) Atopobium parvulum DSM 20469 8413401 YP_003179570.1 CDS Apar_0548 NC_013203.1 633868 634785 R hypothetical protein complement(633868..634785) Atopobium parvulum DSM 20469 8413402 YP_003179571.1 CDS Apar_0549 NC_013203.1 634907 635935 R KEGG: vvu:VV2_1003 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; BRCT domain protein; SMART: Exonuclease; BRCT domain protein; DNA polymerase III subunit epsilon complement(634907..635935) Atopobium parvulum DSM 20469 8413403 YP_003179572.1 CDS Apar_0550 NC_013203.1 635981 636181 R KEGG: zmo:ZMO0901 hypothetical protein; hypothetical protein complement(635981..636181) Atopobium parvulum DSM 20469 8413404 YP_003179573.1 CDS Apar_0551 NC_013203.1 636290 636922 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; SMART: helix-turn-helix domain protein; KEGG: btr:Btr_0553 hypothetical protein; XRE family transcriptional regulator complement(636290..636922) Atopobium parvulum DSM 20469 8413405 YP_003179574.1 CDS Apar_0552 NC_013203.1 637062 637277 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sbn:Sbal195_3495 putative phage repressor; XRE family transcriptional regulator 637062..637277 Atopobium parvulum DSM 20469 8413406 YP_003179575.1 CDS Apar_0553 NC_013203.1 637841 638044 D hypothetical protein 637841..638044 Atopobium parvulum DSM 20469 8413407 YP_003179576.1 CDS Apar_0554 NC_013203.1 638113 638922 D PFAM: BRO domain protein; phage antirepressor protein; KEGG: bpm:BURPS1710b_1644 BRO domain-containing protein; prophage antirepressor 638113..638922 Atopobium parvulum DSM 20469 8413408 YP_003179577.1 CDS Apar_0556 NC_013203.1 639117 639311 D hypothetical protein 639117..639311 Atopobium parvulum DSM 20469 8413410 YP_003179578.1 CDS Apar_0557 NC_013203.1 639301 639669 D hypothetical protein 639301..639669 Atopobium parvulum DSM 20469 8413411 YP_003179579.1 CDS Apar_0558 NC_013203.1 639659 640159 D hypothetical protein 639659..640159 Atopobium parvulum DSM 20469 8413412 YP_003179580.1 CDS Apar_0559 NC_013203.1 640152 640481 D hypothetical protein 640152..640481 Atopobium parvulum DSM 20469 8413413 YP_003179581.1 CDS Apar_0560 NC_013203.1 640474 640803 D hypothetical protein 640474..640803 Atopobium parvulum DSM 20469 8413414 YP_003179582.1 CDS Apar_0561 NC_013203.1 640796 641338 D KEGG: ent:Ent638_1018 putative methyltransferase; putative methyltransferase 640796..641338 Atopobium parvulum DSM 20469 8413415 YP_003179583.1 CDS Apar_0562 NC_013203.1 641349 641540 D hypothetical protein 641349..641540 Atopobium parvulum DSM 20469 8413416 YP_003179584.1 CDS Apar_0563 NC_013203.1 641709 642149 D KEGG: pag:PLES_25081 hypothetical protein; hypothetical protein 641709..642149 Atopobium parvulum DSM 20469 8413417 YP_003179585.1 CDS Apar_0564 NC_013203.1 642308 642499 D hypothetical protein 642308..642499 Atopobium parvulum DSM 20469 8413418 YP_003179586.1 CDS Apar_0565 NC_013203.1 642499 642675 D hypothetical protein 642499..642675 Atopobium parvulum DSM 20469 8413419 YP_003179587.1 CDS Apar_0566 NC_013203.1 642675 642902 D hypothetical protein 642675..642902 Atopobium parvulum DSM 20469 8413420 YP_003179588.1 CDS Apar_0567 NC_013203.1 642899 644074 D PFAM: integrase family protein; KEGG: bcb:BCB4264_A2589 DNA integration/recombination/invertion protein; integrase family protein 642899..644074 Atopobium parvulum DSM 20469 8413421 YP_003179589.1 CDS Apar_0568 NC_013203.1 644240 644545 D hypothetical protein 644240..644545 Atopobium parvulum DSM 20469 8413422 YP_003179590.1 CDS Apar_0569 NC_013203.1 644532 644777 D hypothetical protein 644532..644777 Atopobium parvulum DSM 20469 8413423 YP_003179591.1 CDS Apar_0570 NC_013203.1 644787 645209 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: nis:NIS_1165 single-strand DNA binding protein; single-strand binding protein 644787..645209 Atopobium parvulum DSM 20469 8413424 YP_003179592.1 CDS Apar_0571 NC_013203.1 645661 646140 D hypothetical protein 645661..646140 Atopobium parvulum DSM 20469 8413425 YP_003179593.1 CDS Apar_0572 NC_013203.1 646404 646511 D hypothetical protein 646404..646511 Atopobium parvulum DSM 20469 8413426 YP_003179594.1 CDS Apar_0573 NC_013203.1 646498 646680 D hypothetical protein 646498..646680 Atopobium parvulum DSM 20469 8413427 YP_003179595.1 CDS Apar_0574 NC_013203.1 646812 647120 D SMART: HNH nuclease; HNH nuclease 646812..647120 Atopobium parvulum DSM 20469 8413428 YP_003179596.1 CDS Apar_0575 NC_013203.1 647226 647471 D hypothetical protein 647226..647471 Atopobium parvulum DSM 20469 8413429 YP_003179597.1 CDS Apar_0576 NC_013203.1 647471 648961 D hypothetical protein 647471..648961 Atopobium parvulum DSM 20469 8413430 YP_003179598.1 CDS Apar_0577 NC_013203.1 648958 650424 D PFAM: protein of unknown function DUF1483; hypothetical protein 648958..650424 Atopobium parvulum DSM 20469 8413431 YP_003179599.1 CDS Apar_0578 NC_013203.1 650405 651589 D hypothetical protein 650405..651589 Atopobium parvulum DSM 20469 8413432 YP_003179600.1 CDS Apar_0579 NC_013203.1 651785 652237 D KEGG: bce:BC1893 scaffold protein; hypothetical protein 651785..652237 Atopobium parvulum DSM 20469 8413433 YP_003179601.1 CDS Apar_0580 NC_013203.1 652253 653137 D PFAM: major capsid protein HK97; KEGG: mes:Meso_1895 phage major capsid protein, HK97 family; major capsid protein HK97 652253..653137 Atopobium parvulum DSM 20469 8413434 YP_003179602.1 CDS Apar_0581 NC_013203.1 653153 653572 D hypothetical protein 653153..653572 Atopobium parvulum DSM 20469 8413435 YP_003179603.1 CDS Apar_0582 NC_013203.1 653559 653897 D hypothetical protein 653559..653897 Atopobium parvulum DSM 20469 8413436 YP_003179604.1 CDS Apar_0583 NC_013203.1 653890 654186 D hypothetical protein 653890..654186 Atopobium parvulum DSM 20469 8413437 YP_003179605.1 CDS Apar_0584 NC_013203.1 654183 654533 D hypothetical protein 654183..654533 Atopobium parvulum DSM 20469 8413438 YP_003179606.1 CDS Apar_0585 NC_013203.1 654542 655183 D hypothetical protein 654542..655183 Atopobium parvulum DSM 20469 8413439 YP_003179607.1 CDS Apar_0586 NC_013203.1 655206 655607 D hypothetical protein 655206..655607 Atopobium parvulum DSM 20469 8413440 YP_003179608.1 CDS Apar_0587 NC_013203.1 655739 655981 D hypothetical protein 655739..655981 Atopobium parvulum DSM 20469 8413441 YP_003179609.1 CDS Apar_0588 NC_013203.1 655992 658871 D TIGRFAM: phage tape measure protein; KEGG: bcz:BCZK3413 prophage membrane protein; phage tape measure protein 655992..658871 Atopobium parvulum DSM 20469 8413442 YP_003179610.1 CDS Apar_0589 NC_013203.1 658864 659694 D hypothetical protein 658864..659694 Atopobium parvulum DSM 20469 8413443 YP_003179611.1 CDS Apar_0590 NC_013203.1 659682 661247 D KEGG: bpl:BURPS1106A_A2802 haemagglutinin; hypothetical protein 659682..661247 Atopobium parvulum DSM 20469 8413444 YP_003179612.1 CDS Apar_0591 NC_013203.1 661247 661471 D hypothetical protein 661247..661471 Atopobium parvulum DSM 20469 8413445 YP_003179613.1 CDS Apar_0592 NC_013203.1 661473 662279 D hypothetical protein 661473..662279 Atopobium parvulum DSM 20469 8413446 YP_003179614.1 CDS Apar_0593 NC_013203.1 662291 662620 D hypothetical protein 662291..662620 Atopobium parvulum DSM 20469 8413447 YP_003179615.1 CDS Apar_0594 NC_013203.1 662661 662963 D TIGRFAM: holin, phage phi LC3 family; PFAM: Holin phage phi LC3; holin, phage phi LC3 family 662661..662963 Atopobium parvulum DSM 20469 8413448 YP_003179616.1 CDS Apar_0595 NC_013203.1 662966 664018 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; putative cell wall binding repeat-containing protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease; N-acetylmuramoyl-L-alanine amidase family 2 protein 662966..664018 Atopobium parvulum DSM 20469 8413449 YP_003179617.1 CDS Apar_0596 NC_013203.1 664233 664544 D hypothetical protein 664233..664544 Atopobium parvulum DSM 20469 8413450 YP_003179618.1 CDS Apar_0597 NC_013203.1 664596 665024 D hypothetical protein 664596..665024 Atopobium parvulum DSM 20469 8413451 YP_003179619.1 CDS Apar_0598 NC_013203.1 665604 666794 D PFAM: aminotransferase class I and II; KEGG: bsu:BSU31440 aminotransferase; class I and II aminotransferase 665604..666794 Atopobium parvulum DSM 20469 8413453 YP_003179620.1 CDS Apar_0599 NC_013203.1 667324 668340 D TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: bcb:BCB4264_A3817 1-phosphofructokinase; 1-phosphofructokinase 667324..668340 Atopobium parvulum DSM 20469 8413456 YP_003179621.1 CDS Apar_0600 NC_013203.1 668626 670329 D KEGG: bsu:BSU13910 phosphotransferase system (PTS) enzyme I; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; phosphoenolpyruvate-protein phosphotransferase 668626..670329 Atopobium parvulum DSM 20469 8413457 YP_003179622.1 CDS Apar_0601 NC_013203.1 670463 671392 R PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: bha:BH1953 hypothetical protein; diacylglycerol kinase catalytic subunit complement(670463..671392) Atopobium parvulum DSM 20469 8413458 YP_003179623.1 CDS Apar_0602 NC_013203.1 671565 672419 D PFAM: ABC-2 type transporter; KEGG: apl:APL_1463 putative ABC-transporter; ABC-2 type transporter 671565..672419 Atopobium parvulum DSM 20469 8413459 YP_003179624.1 CDS Apar_0603 NC_013203.1 672427 673146 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bha:BH0873 transcriptional repressor of the trehalose operon; GntR family transcriptional regulator complement(672427..673146) Atopobium parvulum DSM 20469 8413460 YP_003179625.1 CDS Apar_0604 NC_013203.1 673442 674752 D PFAM: extracellular solute-binding protein family 1; KEGG: rec:RHECIAT_CH0001624 putative sugar ABC transporter, substrate-binding protein; family 1 extracellular solute-binding protein 673442..674752 Atopobium parvulum DSM 20469 8413461 YP_003179626.1 CDS Apar_0605 NC_013203.1 674836 675690 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30280 sugar transport; binding-protein-dependent transport system inner membrane protein 674836..675690 Atopobium parvulum DSM 20469 8413462 YP_003179627.1 CDS Apar_0606 NC_013203.1 675690 676529 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120383 putative permease component of ABC transporter; binding-protein-dependent transport system inner membrane protein 675690..676529 Atopobium parvulum DSM 20469 8413463 YP_003179628.1 CDS Apar_0607 NC_013203.1 676577 677770 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ban:BA4232 sugar ABC transporter, ATP-binding protein; ABC transporter-like protein 676577..677770 Atopobium parvulum DSM 20469 8413464 YP_003179629.1 CDS Apar_0608 NC_013203.1 677836 679329 D KEGG: 4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 677836..679329 Atopobium parvulum DSM 20469 8413465 YP_003179630.1 CDS Apar_0609 NC_013203.1 679329 681593 D KEGG: ftn:FTN_0517 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 679329..681593 Atopobium parvulum DSM 20469 8413466 YP_003179631.1 CDS Apar_0610 NC_013203.1 682139 683470 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 682139..683470 Atopobium parvulum DSM 20469 8413469 YP_003179632.1 CDS Apar_0611 NC_013203.1 683700 684299 R TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cja:CJA_0666 possible DNA-3-methyladenine glycosidase; DNA-3-methyladenine glycosylase complement(683700..684299) Atopobium parvulum DSM 20469 8413470 YP_003179633.1 CDS Apar_0612 NC_013203.1 684466 685719 D KEGG: pca:Pcar_1613 carbamoyl phosphate synthase small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; carbamoyl-phosphate synthase small subunit 684466..685719 Atopobium parvulum DSM 20469 8413471 YP_003179634.1 CDS Apar_0613 NC_013203.1 685719 688940 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: mgm:Mmc1_3018 carbamoyl-phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 685719..688940 Atopobium parvulum DSM 20469 8413472 YP_003179635.1 CDS Apar_0614 NC_013203.1 689231 690655 D TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; KEGG: bha:BH3053 trigger factor; trigger factor 689231..690655 Atopobium parvulum DSM 20469 8413474 YP_003179636.1 CDS Apar_0615 NC_013203.1 690787 691395 D PFAM: peptidase S14 ClpP; KEGG: bpt:Bpet2791 ATP-dependent Clp protease proteolytic subunit; endopeptidase Clp 690787..691395 Atopobium parvulum DSM 20469 8413475 YP_003179637.1 CDS Apar_0616 NC_013203.1 691422 692720 D KEGG: bcr:BCAH187_A4608 ATP-dependent Clp protease, ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX 691422..692720 Atopobium parvulum DSM 20469 8413476 YP_003179638.1 CDS Apar_0617 NC_013203.1 692763 693839 R PFAM: glycosyl transferase family 8; KEGG: eta:ETA_13400 glycosyl transferase; glycosyl transferase family protein complement(692763..693839) Atopobium parvulum DSM 20469 8413477 YP_003179639.1 CDS Apar_0618 NC_013203.1 693926 694696 R PFAM: TatD-related deoxyribonuclease; KEGG: atc:AGR_pAT_25 putative Mg-dependent DNase; TatD-related deoxyribonuclease complement(693926..694696) Atopobium parvulum DSM 20469 8413478 YP_003179640.1 CDS Apar_0619 NC_013203.1 694689 695423 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: tbd:Tbd_0522 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein complement(694689..695423) Atopobium parvulum DSM 20469 8413479 YP_003179641.1 CDS Apar_0620 NC_013203.1 695607 698294 D TIGRFAM: valyl-tRNA synthetase; KEGG: gsu:GSU2045 valyl-tRNA synthetase; valyl-tRNA synthetase 695607..698294 Atopobium parvulum DSM 20469 8413480 YP_003179642.1 CDS Apar_0621 NC_013203.1 698372 700045 D PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: nme:NMB1839 formate--tetrahydrofolate ligase; Formate--tetrahydrofolate ligase 698372..700045 Atopobium parvulum DSM 20469 8413481 YP_003179643.1 CDS Apar_0622 NC_013203.1 700045 700698 D PFAM: Formiminotransferase-cyclodeaminase; KEGG: gbe:GbCGDNIH1_0051 methenyltetrahydrofolate cyclohydrolase; formiminotransferase-cyclodeaminase 700045..700698 Atopobium parvulum DSM 20469 8413482 YP_003179644.1 CDS Apar_0623 NC_013203.1 700700 701569 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: bac:BamMC406_2050 methenyltetrahydrofolate cyclohydrolase; tetrahydrofolate dehydrogenase/cyclohydrolase 700700..701569 Atopobium parvulum DSM 20469 8413483 YP_003179645.1 CDS Apar_0624 NC_013203.1 701591 702178 D KEGG: bsu:BSU22780 GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I 701591..702178 Atopobium parvulum DSM 20469 8413484 YP_003179646.1 CDS Apar_0625 NC_013203.1 702193 703617 D KEGG: gur:Gura_3277 FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 702193..703617 Atopobium parvulum DSM 20469 8413485 YP_003179647.1 CDS Apar_0626 NC_013203.1 703703 704134 D KEGG: gme:Gmet_3473 response regulator receiver domain-containing protein; hypothetical protein 703703..704134 Atopobium parvulum DSM 20469 8413486 YP_003179648.1 CDS Apar_0627 NC_013203.1 704272 706038 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: bcr:BCAH187_A2489 threonyl-tRNA synthetase; threonyl-tRNA synthetase 704272..706038 Atopobium parvulum DSM 20469 8413487 YP_003179649.1 CDS Apar_0628 NC_013203.1 706031 706798 D KEGG: mrd:Mrad2831_4408 O-succinylhomoserine (thiol)-lyase; hypothetical protein 706031..706798 Atopobium parvulum DSM 20469 8413488 YP_003179650.1 CDS Apar_0629 NC_013203.1 706866 709484 D PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_02199 bifunctional acetaldehyde- CoA/alcohol dehydrogenase; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 706866..709484 Atopobium parvulum DSM 20469 8413489 YP_003179651.1 CDS Apar_0630 NC_013203.1 709855 710898 R hypothetical protein complement(709855..710898) Atopobium parvulum DSM 20469 8413490 YP_003179652.1 CDS Apar_0631 NC_013203.1 711113 711601 R PFAM: dihydrofolate reductase region; KEGG: mmw:Mmwyl1_3741 dihydrofolate reductase; dihydrofolate reductase subunit complement(711113..711601) Atopobium parvulum DSM 20469 8413491 YP_003179653.1 CDS Apar_0632 NC_013203.1 711674 712522 R KEGG: bsu:BSU17680 thymidylate synthase; TIGRFAM: thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase complement(711674..712522) Atopobium parvulum DSM 20469 8413492 YP_003179654.1 CDS Apar_0633 NC_013203.1 712613 712861 R hypothetical protein complement(712613..712861) Atopobium parvulum DSM 20469 8413493 YP_003179655.1 CDS Apar_0634 NC_013203.1 713063 713494 R PFAM: NUDIX hydrolase; KEGG: gbm:Gbem_3270 NUDIX hydrolase; NUDIX hydrolase complement(713063..713494) Atopobium parvulum DSM 20469 8413494 YP_003179656.1 CDS Apar_0635 NC_013203.1 713496 714212 R PFAM: acyl-ACP thioesterase; KEGG: acyl-ACP thioesterase; acyl-ACP thioesterase complement(713496..714212) Atopobium parvulum DSM 20469 8413495 YP_003179657.1 CDS Apar_0636 NC_013203.1 714273 715100 R PFAM: protein of unknown function DUF1113; KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein complement(714273..715100) Atopobium parvulum DSM 20469 8413496 YP_003179658.1 CDS Apar_0637 NC_013203.1 715097 715720 R KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein complement(715097..715720) Atopobium parvulum DSM 20469 8413497 YP_003179659.1 CDS Apar_0638 NC_013203.1 715843 716772 R PFAM: diacylglycerol kinase catalytic region; KEGG: oan:Oant_2074 diacylglycerol kinase catalytic region; diacylglycerol kinase catalytic subunit complement(715843..716772) Atopobium parvulum DSM 20469 8413498 YP_003179660.1 CDS Apar_0639 NC_013203.1 716862 718001 D KEGG: mag:amb2836 ribonuclease D; TIGRFAM: ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 716862..718001 Atopobium parvulum DSM 20469 8413499 YP_003179661.1 CDS Apar_0640 NC_013203.1 718211 718897 D PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: bca:BCE_1656 neutral zinc metallopeptidase, putative; peptidase membrane zinc metallopeptidase putative 718211..718897 Atopobium parvulum DSM 20469 8413500 YP_003179662.1 CDS Apar_0641 NC_013203.1 718900 720249 D KEGG: pap:PSPA7_1339 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 718900..720249 Atopobium parvulum DSM 20469 8413501 YP_003179663.1 CDS Apar_0642 NC_013203.1 720264 720527 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sse:Ssed_3327 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 720264..720527 Atopobium parvulum DSM 20469 8413502 YP_003179664.1 CDS Apar_0643 NC_013203.1 720538 720882 D PFAM: histidine triad (HIT) protein; KEGG: abu:Abu_2054 HIT family protein; histidine triad (HIT) protein 720538..720882 Atopobium parvulum DSM 20469 8413503 YP_003179665.1 CDS Apar_0644 NC_013203.1 721019 722188 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: hhe:HH1308 acetate kinase; acetate kinase 721019..722188 Atopobium parvulum DSM 20469 8413504 YP_003179666.1 CDS Apar_0645 NC_013203.1 722258 723199 R PFAM: Aldose 1-epimerase; KEGG: bcz:BCZK1470 LacX protein; aldose 1-epimerase complement(722258..723199) Atopobium parvulum DSM 20469 8413505 YP_003179667.1 CDS Apar_0646 NC_013203.1 723329 724309 R TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; KEGG: phosphate acetyltransferase; phosphate acetyltransferase complement(723329..724309) Atopobium parvulum DSM 20469 8413506 YP_003179668.1 CDS Apar_0647 NC_013203.1 724550 725752 D KEGG: pat:Patl_3069 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 724550..725752 Atopobium parvulum DSM 20469 8413507 YP_003179669.1 CDS Apar_0648 NC_013203.1 725764 726798 D PFAM: glycosyl transferase family 2; KEGG: cko:CKO_05082 hypothetical protein; glycosyl transferase family protein 725764..726798 Atopobium parvulum DSM 20469 8413508 YP_003179670.1 CDS Apar_0649 NC_013203.1 726876 727538 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bat:BAS4352 Maf-like protein; maf protein complement(726876..727538) Atopobium parvulum DSM 20469 8413509 YP_003179671.1 CDS Apar_0650 NC_013203.1 727648 727833 R KEGG: gme:Gmet_0148 4Fe-4S ferredoxin, iron-sulfur binding protein; 4Fe-4S ferredoxin complement(727648..727833) Atopobium parvulum DSM 20469 8413510 YP_003179672.1 CDS Apar_0652 NC_013203.1 728234 729559 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; deoxyribonuclease/rho motif-related TRAM; KEGG: bsu:BSU08020 hypothetical protein; TrmA family RNA methyltransferase complement(728234..729559) Atopobium parvulum DSM 20469 8413512 YP_003179673.1 CDS Apar_0653 NC_013203.1 729560 730609 R KEGG: ppd:Ppro_0579 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase complement(729560..730609) Atopobium parvulum DSM 20469 8413513 YP_003179674.1 CDS Apar_0654 NC_013203.1 730651 731433 R KEGG: swd:Swoo_2884 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme complement(730651..731433) Atopobium parvulum DSM 20469 8413514 YP_003179675.1 CDS Apar_0655 NC_013203.1 731468 731719 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(731468..731719) Atopobium parvulum DSM 20469 8413515 YP_003179676.1 CDS Apar_0656 NC_013203.1 731785 733941 R KEGG: bar:GBAA0509 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate acetyltransferase complement(731785..733941) Atopobium parvulum DSM 20469 8413516 YP_003179677.1 CDS Apar_0657 NC_013203.1 734004 734102 D hypothetical protein 734004..734102 Atopobium parvulum DSM 20469 8413517 YP_003179678.1 CDS Apar_0658 NC_013203.1 734312 734893 D TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: bcb:BCB4264_A4379 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 734312..734893 Atopobium parvulum DSM 20469 8413518 YP_003179679.1 CDS Apar_0659 NC_013203.1 734960 735850 R PFAM: dehydroquinase class II; phosphotransferase system PTS EIIB protein; KEGG: rde:RD1_2651 3-dehydroquinate dehydratase; dehydroquinase class II complement(734960..735850) Atopobium parvulum DSM 20469 8413519 YP_003179680.1 CDS Apar_0660 NC_013203.1 736032 737342 R PFAM: shikimate kinase; Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5- dehydrogenase; KEGG: sat:SYN_01937 shikimate 5-dehydrogenase; shikimate kinase complement(736032..737342) Atopobium parvulum DSM 20469 8413520 YP_003179681.1 CDS Apar_0661 NC_013203.1 737332 737604 R PFAM: Chorismate mutase; KEGG: vfm:VFMJ11_0566 T-protein; Chorismate mutase complement(737332..737604) Atopobium parvulum DSM 20469 8413521 YP_003179682.1 CDS Apar_0662 NC_013203.1 737597 738739 R KEGG: hypothetical protein ; K01736 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase complement(737597..738739) Atopobium parvulum DSM 20469 8413522 YP_003179683.1 CDS Apar_0663 NC_013203.1 738740 740020 R KEGG: neu:NE1964 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase complement(738740..740020) Atopobium parvulum DSM 20469 8413523 YP_003179684.1 CDS Apar_0664 NC_013203.1 740124 740750 D PFAM: KDPG and KHG aldolase; KEGG: scl:sce5154 KDPG and KHG aldolase; KDPG and KHG aldolase 740124..740750 Atopobium parvulum DSM 20469 8413524 YP_003179685.1 CDS Apar_0665 NC_013203.1 740747 741826 R KEGG: gme:Gmet_0978 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(740747..741826) Atopobium parvulum DSM 20469 8413525 YP_003179686.1 CDS Apar_0666 NC_013203.1 742054 744498 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ypb:YPTS_0616 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 742054..744498 Atopobium parvulum DSM 20469 8413527 YP_003179687.1 CDS Apar_0667 NC_013203.1 744532 745653 D KEGG: bur:Bcep18194_C6723 adenylate/guanylate cyclase; hypothetical protein 744532..745653 Atopobium parvulum DSM 20469 8413528 YP_003179688.1 CDS Apar_0668 NC_013203.1 745786 746325 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: wsu:WS0363 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 745786..746325 Atopobium parvulum DSM 20469 8413529 YP_003179689.1 CDS Apar_0669 NC_013203.1 746357 747760 D SMART: Tetratricopeptide domain protein; KEGG: ubiquitously transcribed sex (x/y) chromosome tetratricopeptide repeat protein ; K11447 histone demethylase; hypothetical protein 746357..747760 Atopobium parvulum DSM 20469 8413530 YP_003179690.1 CDS Apar_0670 NC_013203.1 747832 748875 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; cell division protein FtsA; KEGG: gme:Gmet_0918 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 747832..748875 Atopobium parvulum DSM 20469 8413531 YP_003179691.1 CDS Apar_0671 NC_013203.1 748878 749951 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: gbm:Gbem_2462 rod shape-determining protein MreC; rod shape-determining protein MreC 748878..749951 Atopobium parvulum DSM 20469 8413532 YP_003179692.1 CDS Apar_0672 NC_013203.1 749961 750521 D TIGRFAM: rod shape-determining protein MreD; rod shape-determining protein MreD 749961..750521 Atopobium parvulum DSM 20469 8413533 YP_003179693.1 CDS Apar_0673 NC_013203.1 750531 752540 D KEGG: penicillin-binding protein 2; K05515 penicillin binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 750531..752540 Atopobium parvulum DSM 20469 8413534 YP_003179694.1 CDS Apar_0674 NC_013203.1 752556 753782 D PFAM: cell cycle protein; KEGG: sfu:Sfum_2588 rod shape-determining protein RodA; cell cycle protein 752556..753782 Atopobium parvulum DSM 20469 8413535 YP_003179695.1 CDS Apar_0675 NC_013203.1 753786 754760 D KEGG: sus:Acid_2702 hypothetical protein; hypothetical protein 753786..754760 Atopobium parvulum DSM 20469 8413536 YP_003179696.1 CDS Apar_0676 NC_013203.1 754774 756639 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: glo:Glov_0470 radical SAM domain protein; radical SAM protein 754774..756639 Atopobium parvulum DSM 20469 8413537 YP_003179697.1 CDS Apar_0677 NC_013203.1 756645 757457 D KEGG: afw:Anae109_0737 radical SAM domain- containing protein; hypothetical protein 756645..757457 Atopobium parvulum DSM 20469 8413538 YP_003179698.1 CDS Apar_0678 NC_013203.1 757653 758003 D TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: dal:Dalk_4114 ribosomal protein L21; 50S ribosomal protein L21 757653..758003 Atopobium parvulum DSM 20469 8413539 YP_003179699.1 CDS Apar_0679 NC_013203.1 758042 758296 D TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: aba:Acid345_0019 50S ribosomal protein L27; 50S ribosomal protein L27 758042..758296 Atopobium parvulum DSM 20469 8413540 YP_003179700.1 CDS Apar_0680 NC_013203.1 758687 759280 D KEGG: bsu:BSU10010 hypothetical protein; hypothetical protein 758687..759280 Atopobium parvulum DSM 20469 8413541 YP_003179701.1 CDS Apar_0681 NC_013203.1 759316 761241 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vha:VIBHAR_05108 ATP-binding ABC transporter; ABC transporter-like protein 759316..761241 Atopobium parvulum DSM 20469 8413542 YP_003179702.1 CDS Apar_0682 NC_013203.1 761234 761980 D PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein; cobalt transport protein 761234..761980 Atopobium parvulum DSM 20469 8413543 YP_003179703.1 CDS Apar_0683 NC_013203.1 762053 763501 D TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: bsu:BSU27920 GTPase ObgE; GTP-binding protein Obg/CgtA 762053..763501 Atopobium parvulum DSM 20469 8413544 YP_003179704.1 CDS Apar_0684 NC_013203.1 763505 764191 D KEGG: bcy:Bcer98_3058 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 763505..764191 Atopobium parvulum DSM 20469 8413545 YP_003179705.1 CDS Apar_0685 NC_013203.1 764296 764934 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bcr:BCAH187_A4464 conserved hypothetical protein TIGR00488; metal dependent phosphohydrolase 764296..764934 Atopobium parvulum DSM 20469 8413546 YP_003179706.1 CDS Apar_0686 NC_013203.1 764964 765440 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: bsu:BSU25620 hypothetical protein; iojap family protein 764964..765440 Atopobium parvulum DSM 20469 8413547 YP_003179707.1 CDS Apar_0687 NC_013203.1 765451 766785 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sfu:Sfum_0738 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(765451..766785) Atopobium parvulum DSM 20469 8413548 YP_003179708.1 CDS Apar_0688 NC_013203.1 766958 767344 D TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: sit:TM1040_2607 30S ribosomal protein S16; 30S ribosomal protein S16 766958..767344 Atopobium parvulum DSM 20469 8413549 YP_003179709.1 CDS Apar_0689 NC_013203.1 767348 767650 D KEGG: mxa:MXAN_3546 KH domain protein; RNA-binding domain-containing protein 767348..767650 Atopobium parvulum DSM 20469 8413550 YP_003179710.1 CDS Apar_0690 NC_013203.1 767716 768174 D KEGG: bar:GBAA3980 16S rRNA-processing protein; 16S rRNA-processing protein 767716..768174 Atopobium parvulum DSM 20469 8413551 YP_003179711.1 CDS Apar_0691 NC_013203.1 768176 768925 D KEGG: pca:Pcar_2221 tRNA(guanine-N1)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 768176..768925 Atopobium parvulum DSM 20469 8413552 YP_003179712.1 CDS Apar_0692 NC_013203.1 768918 769472 D KEGG: sat:SYN_01527 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 768918..769472 Atopobium parvulum DSM 20469 8413553 YP_003179713.1 CDS glyQ NC_013203.1 769506 770420 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 769506..770420 Atopobium parvulum DSM 20469 8413554 YP_003179714.1 CDS Apar_0694 NC_013203.1 770421 772508 D KEGG: msu:MS1956 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit; glycyl-tRNA synthetase subunit beta 770421..772508 Atopobium parvulum DSM 20469 8413555 YP_003179715.1 CDS Apar_0695 NC_013203.1 772571 772969 D KEGG: bha:BH1373 hypothetical protein; hypothetical protein 772571..772969 Atopobium parvulum DSM 20469 8413556 YP_003179716.1 CDS Apar_0696 NC_013203.1 773252 776014 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 773252..776014 Atopobium parvulum DSM 20469 8413557 YP_003179717.1 CDS Apar_0697 NC_013203.1 776129 777187 D KEGG: ade:Adeh_2590 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 776129..777187 Atopobium parvulum DSM 20469 8413558 YP_003179718.1 CDS Apar_0698 NC_013203.1 777301 777642 D TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: bsu:BSU16040 50S ribosomal protein L19; 50S ribosomal protein L19 777301..777642 Atopobium parvulum DSM 20469 8413559 YP_003179719.1 CDS Apar_0699 NC_013203.1 777717 778490 D PFAM: ribonuclease HII/HIII; KEGG: bcz:BCZK3596 ribonuclease HII; Ribonuclease H 777717..778490 Atopobium parvulum DSM 20469 8413560 YP_003179720.1 CDS Apar_0700 NC_013203.1 778703 779221 D PFAM: protein of unknown function UPF0102; KEGG: gsu:GSU0650 hypothetical protein; hypothetical protein 778703..779221 Atopobium parvulum DSM 20469 8413561 YP_003179721.1 CDS Apar_0701 NC_013203.1 779218 780714 D KEGG: aba:Acid345_3233 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 779218..780714 Atopobium parvulum DSM 20469 8413562 YP_003179722.1 CDS Apar_0702 NC_013203.1 780717 781592 D PFAM: SMF family protein; KEGG: dar:Daro_0019 smf protein; SMF family protein 780717..781592 Atopobium parvulum DSM 20469 8413563 YP_003179723.1 CDS Apar_0703 NC_013203.1 781610 782944 D TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; KEGG: bcy:Bcer98_2484 tRNA (uracil-5-)- methyltransferase Gid; hypothetical protein 781610..782944 Atopobium parvulum DSM 20469 8413564 YP_003179724.1 CDS Apar_0704 NC_013203.1 782946 783863 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pen:PSEEN4254 site-specific tyrosine recombinase XerD; integrase family protein 782946..783863 Atopobium parvulum DSM 20469 8413565 YP_003179725.1 CDS Apar_0705 NC_013203.1 784125 784877 D TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bcb:BCB4264_A3925 ribosomal protein S2; 30S ribosomal protein S2 784125..784877 Atopobium parvulum DSM 20469 8413566 YP_003179726.1 CDS Apar_0706 NC_013203.1 784931 785803 D TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: glo:Glov_2709 translation elongation factor Ts; translation elongation factor Ts 784931..785803 Atopobium parvulum DSM 20469 8413567 YP_003179727.1 CDS Apar_0707 NC_013203.1 785833 786657 D TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: gur:Gura_3731 uridylate kinase; uridylate kinase 785833..786657 Atopobium parvulum DSM 20469 8413568 YP_003179728.1 CDS Apar_0708 NC_013203.1 786657 787202 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dde:Dde_1128 ribosome recycling factor; ribosome recycling factor 786657..787202 Atopobium parvulum DSM 20469 8413569 YP_003179729.1 CDS Apar_0709 NC_013203.1 787203 787982 D KEGG: bha:BH2423 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 787203..787982 Atopobium parvulum DSM 20469 8413570 YP_003179730.1 CDS Apar_0710 NC_013203.1 787985 789010 D PFAM: phosphatidate cytidylyltransferase; KEGG: mxa:MXAN_2556 putative phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 787985..789010 Atopobium parvulum DSM 20469 8413571 YP_003179731.1 CDS Apar_0711 NC_013203.1 789014 790201 D KEGG: bcb:BCB4264_A3919 1-deoxy-D-xylulose 5- phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 789014..790201 Atopobium parvulum DSM 20469 8413572 YP_003179732.1 CDS Apar_0712 NC_013203.1 790209 791579 D PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: bsu:BSU16560 hypothetical protein; peptidase M50 790209..791579 Atopobium parvulum DSM 20469 8413573 YP_003179733.1 CDS Apar_0713 NC_013203.1 791588 792661 D KEGG: gsu:GSU1459 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 791588..792661 Atopobium parvulum DSM 20469 8413574 YP_003179734.1 CDS Apar_0714 NC_013203.1 792720 794417 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; KEGG: dde:Dde_2206 prolyl-tRNA synthetase; prolyl-tRNA synthetase 792720..794417 Atopobium parvulum DSM 20469 8413575 YP_003179735.1 CDS Apar_0715 NC_013203.1 794435 795223 R PFAM: zinc/iron permease; KEGG: dvm:DvMF_1916 zinc/iron permease; zinc/iron permease complement(794435..795223) Atopobium parvulum DSM 20469 8413576 YP_003179736.1 CDS Apar_0716 NC_013203.1 795707 796084 D hypothetical protein 795707..796084 Atopobium parvulum DSM 20469 8413579 YP_003179737.1 CDS Apar_0717 NC_013203.1 796152 796559 D hypothetical protein 796152..796559 Atopobium parvulum DSM 20469 8413580 YP_003179738.1 CDS Apar_0718 NC_013203.1 796795 797187 D hypothetical protein 796795..797187 Atopobium parvulum DSM 20469 8413582 YP_003179739.1 CDS Apar_0719 NC_013203.1 797256 799274 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2545 ABC transporter-related protein; ABC transporter-like protein 797256..799274 Atopobium parvulum DSM 20469 8413583 YP_003179740.1 CDS Apar_0720 NC_013203.1 799379 800059 D PFAM: peptidase M50; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative; peptidase M50 799379..800059 Atopobium parvulum DSM 20469 8413584 YP_003179741.1 CDS Apar_0721 NC_013203.1 800059 800973 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: bcy:Bcer98_2757 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 800059..800973 Atopobium parvulum DSM 20469 8413585 YP_003179742.1 CDS Apar_0722 NC_013203.1 800992 801669 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pca:Pcar_1300 hypothetical protein; chromosome segregation and condensation protein ScpB 800992..801669 Atopobium parvulum DSM 20469 8413586 YP_003179743.1 CDS Apar_0723 NC_013203.1 801673 802512 D PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: gsu:GSU1403 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase 801673..802512 Atopobium parvulum DSM 20469 8413587 YP_003179744.1 CDS Apar_0724 NC_013203.1 802562 803272 D PFAM: Phosphoglycerate mutase; KEGG: bcr:BCAH187_A2175 phosphoglycerate mutase family protein; phosphoglycerate mutase 802562..803272 Atopobium parvulum DSM 20469 8413588 YP_003179745.1 CDS Apar_0725 NC_013203.1 803272 804816 D KEGG: bca:BCE_1623 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; cytidylate kinase 803272..804816 Atopobium parvulum DSM 20469 8413589 YP_003179746.1 CDS Apar_0726 NC_013203.1 804820 805674 D KEGG: gsu:GSU2604 penicillin tolerance protein LytB; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 804820..805674 Atopobium parvulum DSM 20469 8413590 YP_003179747.1 CDS Apar_0727 NC_013203.1 805676 807058 D PFAM: protein of unknown function DUF512; KEGG: glo:Glov_0990 protein of unknown function DUF512; hypothetical protein 805676..807058 Atopobium parvulum DSM 20469 8413591 YP_003179748.1 CDS Apar_0728 NC_013203.1 807105 808430 D KEGG: bcy:Bcer98_1227 GTP-binding protein EngA; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; Ras family protein; SMART: AAA ATPase; small GTP-binding protein 807105..808430 Atopobium parvulum DSM 20469 8413592 YP_003179749.1 CDS Apar_0729 NC_013203.1 808430 809092 D PFAM: protein of unknown function DUF205; KEGG: aba:Acid345_2138 acyl-phosphate glycerol-3- phosphate acyltransferase; hypothetical protein 808430..809092 Atopobium parvulum DSM 20469 8413593 YP_003179750.1 CDS Apar_0730 NC_013203.1 809095 810105 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: bha:BH1640 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 809095..810105 Atopobium parvulum DSM 20469 8413594 YP_003179751.1 CDS Apar_0731 NC_013203.1 810115 810789 D KEGG: bcr:BCAH187_A3908 ribulose-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 810115..810789 Atopobium parvulum DSM 20469 8413595 YP_003179752.1 CDS Apar_0732 NC_013203.1 810856 812004 D PFAM: aminotransferase class V; KEGG: mgm:Mmc1_3063 aminotransferase, class V; class V aminotransferase 810856..812004 Atopobium parvulum DSM 20469 8413596 YP_003179753.1 CDS Apar_0733 NC_013203.1 812102 812821 D PFAM: protein of unknown function DUF164; KEGG: sfu:Sfum_1209 protein of unknown function DUF164; hypothetical protein 812102..812821 Atopobium parvulum DSM 20469 8413597 YP_003179754.1 CDS Apar_0734 NC_013203.1 812836 814062 D KEGG: ank:AnaeK_1492 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 812836..814062 Atopobium parvulum DSM 20469 8413598 YP_003179755.1 CDS Apar_0735 NC_013203.1 814064 814915 D KEGG: bat:BAS4186 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 814064..814915 Atopobium parvulum DSM 20469 8413599 YP_003179756.1 CDS Apar_0736 NC_013203.1 814915 816807 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcb:BCB4264_A2173 ABC transporter, ATP- binding protein; ABC transporter-like protein 814915..816807 Atopobium parvulum DSM 20469 8413600 YP_003179757.1 CDS Apar_0737 NC_013203.1 816808 818553 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: scl:sce5644 carbohydrate ABC transporter; ABC transporter-like protein 816808..818553 Atopobium parvulum DSM 20469 8413601 YP_003179758.1 CDS Apar_0738 NC_013203.1 818553 820397 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bca:BCE_2475 ABC transporter, ATP- binding/permease protein; ABC transporter-like protein 818553..820397 Atopobium parvulum DSM 20469 8413602 YP_003179759.1 CDS Apar_0739 NC_013203.1 820680 820991 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 820680..820991 Atopobium parvulum DSM 20469 8413604 YP_003179760.1 CDS Apar_0740 NC_013203.1 821055 821543 R TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ccv:CCV52592_1839 peptide methionine sulfoxide reductase MsrA/MsrB; peptide methionine sulfoxide reductase complement(821055..821543) Atopobium parvulum DSM 20469 8413605 YP_003179761.1 CDS Apar_0741 NC_013203.1 821570 822238 R PFAM: cyclic nucleotide-binding; KEGG: dds:Ddes_1827 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(821570..822238) Atopobium parvulum DSM 20469 8413606 YP_003179762.1 CDS Apar_0742 NC_013203.1 822371 823966 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 822371..823966 Atopobium parvulum DSM 20469 8413607 YP_003179763.1 CDS Apar_0743 NC_013203.1 824213 825556 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: NADH oxidase lateral transfer candidate; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 824213..825556 Atopobium parvulum DSM 20469 8413608 YP_003179764.1 CDS Apar_0744 NC_013203.1 825684 826430 R PFAM: Methyltransferase type 11; Methyltransferase type 12; putative RNA methylase; KEGG: apa:APP7_0823 hypothetical protein; type 11 methyltransferase complement(825684..826430) Atopobium parvulum DSM 20469 8413609 YP_003179765.1 CDS Apar_0745 NC_013203.1 826724 828517 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 826724..828517 Atopobium parvulum DSM 20469 8413610 YP_003179766.1 CDS Apar_0746 NC_013203.1 828826 829590 D PFAM: Methyltransferase type 11; KEGG: ban:BA2485 hypothetical protein; type 11 methyltransferase 828826..829590 Atopobium parvulum DSM 20469 8413611 YP_003179767.1 CDS Apar_0747 NC_013203.1 829593 830483 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ecl:EcolC_2822 Cof-like hydrolase; HAD-superfamily hydrolase complement(829593..830483) Atopobium parvulum DSM 20469 8413612 YP_003179768.1 CDS Apar_0748 NC_013203.1 830613 832010 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rpt:Rpal_0416 peptidase M20; hypothetical protein 830613..832010 Atopobium parvulum DSM 20469 8413613 YP_003179769.1 CDS Apar_0749 NC_013203.1 832077 832808 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dps:DP0426 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 832077..832808 Atopobium parvulum DSM 20469 8413614 YP_003179770.1 CDS Apar_0750 NC_013203.1 832821 834044 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: bcb:BCB4264_A4185 serine-type D-Ala-D-Ala carboxypeptidase DacF; serine-type D-Ala-D-Ala carboxypeptidase 832821..834044 Atopobium parvulum DSM 20469 8413615 YP_003179771.1 CDS Apar_0751 NC_013203.1 834044 834886 D hypothetical protein 834044..834886 Atopobium parvulum DSM 20469 8413616 YP_003179772.1 CDS Apar_0752 NC_013203.1 834883 835263 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: Os07g0516200; hypothetical protein; endoribonuclease L-PSP 834883..835263 Atopobium parvulum DSM 20469 8413617 YP_003179773.1 CDS Apar_0753 NC_013203.1 835303 835719 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: afw:Anae109_4141 diguanylate cyclase; FHA domain-containing protein 835303..835719 Atopobium parvulum DSM 20469 8413618 YP_003179774.1 CDS Apar_0754 NC_013203.1 835737 836600 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: hpj:jhp0399 putative transcriptional regulator; MerR family transcriptional regulator 835737..836600 Atopobium parvulum DSM 20469 8413619 YP_003179775.1 CDS Apar_0755 NC_013203.1 836653 837186 D PFAM: phosphoribosyltransferase; KEGG: asa:ASA_2089 adenine phosphoribosyltransferase; Adenine phosphoribosyltransferase 836653..837186 Atopobium parvulum DSM 20469 8413620 YP_003179776.1 CDS Apar_0756 NC_013203.1 837579 838775 D PFAM: NLP/P60 protein; KEGG: bsu:BSU34800 hypothetical protein; NLP/P60 protein 837579..838775 Atopobium parvulum DSM 20469 8413621 YP_003179777.1 CDS Apar_0757 NC_013203.1 838905 840491 D PFAM: Chloride channel core; TrkA-C domain protein; KEGG: vsp:VS_II0566 chloride channel protein EriC; chloride channel protein 838905..840491 Atopobium parvulum DSM 20469 8413622 YP_003179778.1 CDS Apar_0758 NC_013203.1 841136 841897 D PFAM: Methyltransferase type 11; KEGG: bcr:BCAH187_A3106 methyltransferase domain family; type 11 methyltransferase 841136..841897 Atopobium parvulum DSM 20469 8413623 YP_003179779.1 CDS Apar_0759 NC_013203.1 841945 842517 D PFAM: protein of unknown function UPF0157; KEGG: ppd:Ppro_1483 hypothetical protein; hypothetical protein 841945..842517 Atopobium parvulum DSM 20469 8413624 YP_003179780.1 CDS Apar_0760 NC_013203.1 842560 842943 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: msu:MS0597 GloA protein; Glyoxalase/bleomycin resistance protein/dioxygenase 842560..842943 Atopobium parvulum DSM 20469 8413625 YP_003179781.1 CDS Apar_0761 NC_013203.1 842973 843569 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tgr:Tgr7_2811 methyltransferase type 11; type 11 methyltransferase 842973..843569 Atopobium parvulum DSM 20469 8413626 YP_003179782.1 CDS Apar_0762 NC_013203.1 843647 844489 D KEGG: bca:BCE_2437 O-methyltransferase domain- containing protein; O-methyltransferase domain-containing protein 843647..844489 Atopobium parvulum DSM 20469 8413627 YP_003179783.1 CDS Apar_0763 NC_013203.1 844525 845052 D PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH0503 hypothetical protein; N-acetyltransferase GCN5 844525..845052 Atopobium parvulum DSM 20469 8413628 YP_003179784.1 CDS Apar_0764 NC_013203.1 845142 845810 D KEGG: ccv:CCV52592_1508 hypothetical protein; hypothetical protein 845142..845810 Atopobium parvulum DSM 20469 8413629 YP_003179785.1 CDS Apar_0765 NC_013203.1 845915 846865 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpc:RPC_3838 thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(845915..846865) Atopobium parvulum DSM 20469 8413630 YP_003179786.1 CDS Apar_0766 NC_013203.1 847029 848345 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: dvl:Dvul_1118 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(847029..848345) Atopobium parvulum DSM 20469 8413631 YP_003179787.1 CDS Apar_0767 NC_013203.1 848415 848864 R KEGG: nar:Saro_0590 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(848415..848864) Atopobium parvulum DSM 20469 8413632 YP_003179788.1 CDS Apar_0768 NC_013203.1 848864 849310 R PFAM: ATP-cone domain protein; KEGG: aba:Acid345_4041 hypothetical protein; ATP-cone domain-containing protein complement(848864..849310) Atopobium parvulum DSM 20469 8413633 YP_003179789.1 CDS Apar_0769 NC_013203.1 849408 849854 R PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: bsu:BSU09370 gamma-D-glutamate-meso- diaminopimelate muropeptidase (major autolysin) (CWBP49'); peptidoglycan-binding LysM complement(849408..849854) Atopobium parvulum DSM 20469 8413634 YP_003179790.1 CDS Apar_0770 NC_013203.1 850041 850694 D KEGG: bcb:BCB4264_A3799 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA 850041..850694 Atopobium parvulum DSM 20469 8413635 YP_003179791.1 CDS Apar_0771 NC_013203.1 850702 851466 D PFAM: protein of unknown function DUF1624; KEGG: atc:AGR_C_2846 hypothetical protein; hypothetical protein 850702..851466 Atopobium parvulum DSM 20469 8413636 YP_003179792.1 CDS Apar_0772 NC_013203.1 851437 852750 R TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: GTP-binding family protein ; K03665 GTP- binding protein HflX; GTP-binding proten HflX complement(851437..852750) Atopobium parvulum DSM 20469 8413637 YP_003179793.1 CDS Apar_0773 NC_013203.1 852831 853769 R KEGG: bcy:Bcer98_2391 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(852831..853769) Atopobium parvulum DSM 20469 8413638 YP_003179794.1 CDS Apar_0774 NC_013203.1 853766 855133 R KEGG: bat:BAS3621 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein complement(853766..855133) Atopobium parvulum DSM 20469 8413639 YP_003179795.1 CDS Apar_0775 NC_013203.1 855136 855459 R PFAM: Stage V sporulation protein S; KEGG: bha:BH2375 stage V sporulation protein S; Stage V sporulation protein S complement(855136..855459) Atopobium parvulum DSM 20469 8413640 YP_003179796.1 CDS Apar_0776 NC_013203.1 855487 856572 R PFAM: ATP-binding region ATPase domain protein; KEGG: tgr:Tgr7_0895 DNA mismatch repair protein MutL; ATPase domain-containing protein complement(855487..856572) Atopobium parvulum DSM 20469 8413641 YP_003179797.1 CDS Apar_0777 NC_013203.1 856576 858129 R KEGG: bsu:BSU16960 phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KH type 1 domain protein; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; RNA binding metal dependent phosphohydrolase complement(856576..858129) Atopobium parvulum DSM 20469 8413642 YP_003179798.1 CDS Apar_0778 NC_013203.1 858413 859087 R PFAM: regulatory protein RecX; KEGG: hch:HCH_02189 hypothetical protein; regulatory protein RecX complement(858413..859087) Atopobium parvulum DSM 20469 8413643 YP_003179799.1 CDS Apar_0779 NC_013203.1 859087 860175 R KEGG: reh:H16_A0544 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein complement(859087..860175) Atopobium parvulum DSM 20469 8413644 YP_003179800.1 CDS Apar_0780 NC_013203.1 860249 860353 R hypothetical protein complement(860249..860353) Atopobium parvulum DSM 20469 8413645 YP_003179801.1 CDS Apar_0781 NC_013203.1 860407 860904 R PFAM: CinA domain protein; KEGG: gbe:GbCGDNIH1_1192 putative competence-damage protein; CinA domain-containing protein complement(860407..860904) Atopobium parvulum DSM 20469 8413646 YP_003179802.1 CDS Apar_0782 NC_013203.1 860998 861609 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: gme:Gmet_1952 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(860998..861609) Atopobium parvulum DSM 20469 8413647 YP_003179803.1 CDS Apar_0783 NC_013203.1 861623 863029 R KEGG: glo:Glov_3199 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG complement(861623..863029) Atopobium parvulum DSM 20469 8413648 YP_003179804.1 CDS Apar_0784 NC_013203.1 862995 863492 R PFAM: protein of unknown function DUF520; KEGG: sus:Acid_3194 nucleotide-binding protein; hypothetical protein complement(862995..863492) Atopobium parvulum DSM 20469 8413649 YP_003179805.1 CDS Apar_0785 NC_013203.1 863540 865045 R SMART: helix-turn-helix domain protein; KEGG: hypothetical protein LOC752473; XRE family transcriptional regulator complement(863540..865045) Atopobium parvulum DSM 20469 8413650 YP_003179806.1 CDS Apar_0786 NC_013203.1 865048 867540 R PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: bcy:Bcer98_2445 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(865048..867540) Atopobium parvulum DSM 20469 8413651 YP_003179807.1 CDS Apar_0787 NC_013203.1 867546 869210 R PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: bha:BH2398 hypothetical protein; beta-lactamase domain-containing protein complement(867546..869210) Atopobium parvulum DSM 20469 8413652 YP_003179808.1 CDS Apar_0788 NC_013203.1 869462 871660 R KEGG: bcy:Bcer98_2459 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; Polyribonucleotide nucleotidyltransferase complement(869462..871660) Atopobium parvulum DSM 20469 8413653 YP_003179809.1 CDS Apar_0789 NC_013203.1 871745 872023 R TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: mag:amb4116 ribosomal protein S15P/S13E; 30S ribosomal protein S15 complement(871745..872023) Atopobium parvulum DSM 20469 8413654 YP_003179810.1 CDS Apar_0790 NC_013203.1 872159 872908 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: DNA repair protein RecO ; K03584 DNA repair protein RecO (recombination protein O); DNA repair protein RecO complement(872159..872908) Atopobium parvulum DSM 20469 8413655 YP_003179811.1 CDS Apar_0791 NC_013203.1 872911 873849 R TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bcr:BCAH187_A4433 GTP-binding protein Era; GTP-binding protein Era complement(872911..873849) Atopobium parvulum DSM 20469 8413656 YP_003179812.1 CDS Apar_0792 NC_013203.1 873862 874239 R PFAM: diacylglycerol kinase; KEGG: pin:Ping_1713 diacylglycerol kinase; diacylglycerol kinase complement(873862..874239) Atopobium parvulum DSM 20469 8413657 YP_003179813.1 CDS Apar_0793 NC_013203.1 874239 874748 R PFAM: protein of unknown function UPF0054; KEGG: ftm:FTM_0691 hypothetical protein; hypothetical protein complement(874239..874748) Atopobium parvulum DSM 20469 8413658 YP_003179814.1 CDS Apar_0794 NC_013203.1 874750 875709 R PFAM: PhoH family protein; KEGG: bha:BH1361 phosphate starvation-induced protein; PhoH family protein complement(874750..875709) Atopobium parvulum DSM 20469 8413659 YP_003179815.1 CDS Apar_0795 NC_013203.1 875721 876992 R KEGG: gbm:Gbem_1643 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein complement(875721..876992) Atopobium parvulum DSM 20469 8413660 YP_003179816.1 CDS Apar_0796 NC_013203.1 876992 878185 R KEGG: bha:BH1348 heat-shock protein (activation of DnaK); TIGRFAM: chaperone protein DnaJ; PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ complement(876992..878185) Atopobium parvulum DSM 20469 8413661 YP_003179817.1 CDS Apar_0797 NC_013203.1 878219 879328 R PFAM: heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: spe:Spro_0693 chaperone protein DnaJ; heat shock protein DnaJ domain-containing protein complement(878219..879328) Atopobium parvulum DSM 20469 8413662 YP_003179818.1 CDS Apar_0798 NC_013203.1 879520 880137 R KEGG: vei:Veis_2445 hypothetical protein; hypothetical protein complement(879520..880137) Atopobium parvulum DSM 20469 8413663 YP_003179819.1 CDS Apar_0799 NC_013203.1 880218 881465 R KEGG: ppd:Ppro_1304 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(880218..881465) Atopobium parvulum DSM 20469 8413664 YP_003179820.1 CDS Apar_0800 NC_013203.1 881475 882566 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: gbm:Gbem_2807 TIM-barrel protein, nifR3 family; nifR3 family TIM-barrel protein complement(881475..882566) Atopobium parvulum DSM 20469 8413665 YP_003179821.1 CDS Apar_0801 NC_013203.1 882576 884432 R TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; KEGG: bcy:Bcer98_3046 GTP-binding protein LepA; GTP-binding protein LepA complement(882576..884432) Atopobium parvulum DSM 20469 8413666 YP_003179822.1 CDS Apar_0802 NC_013203.1 884496 884759 D TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: pha:PSHAa0914 30S ribosomal subunit protein S20; 30S ribosomal protein S20 884496..884759 Atopobium parvulum DSM 20469 8413667 YP_003179823.1 CDS Apar_0803 NC_013203.1 884831 885802 R TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gbm:Gbem_0755 DNA polymerase III, delta subunit; DNA polymerase III subunit delta complement(884831..885802) Atopobium parvulum DSM 20469 8413668 YP_003179824.1 CDS Apar_0804 NC_013203.1 885786 888173 R TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: bcb:BCB4264_A4445 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein complement(885786..888173) Atopobium parvulum DSM 20469 8413669 YP_003179825.1 CDS Apar_0805 NC_013203.1 888166 888918 R TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; competence protein ComEA complement(888166..888918) Atopobium parvulum DSM 20469 8413670 YP_003179826.1 CDS Apar_0806 NC_013203.1 889185 890429 R TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; ExsB family protein; KEGG: bca:BCE_4784 thiamine biosynthesis protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI complement(889185..890429) Atopobium parvulum DSM 20469 8413671 YP_003179827.1 CDS Apar_0807 NC_013203.1 890435 890719 R hypothetical protein complement(890435..890719) Atopobium parvulum DSM 20469 8413672 YP_003179828.1 CDS Apar_0808 NC_013203.1 890719 891297 R KEGG: sfu:Sfum_3630 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(890719..891297) Atopobium parvulum DSM 20469 8413673 YP_003179829.1 CDS Apar_0809 NC_013203.1 891297 891605 R hypothetical protein complement(891297..891605) Atopobium parvulum DSM 20469 8413674 YP_003179830.1 CDS Apar_0810 NC_013203.1 891769 892500 R KEGG: hha:Hhal_0559 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(891769..892500) Atopobium parvulum DSM 20469 8413675 YP_003179831.1 CDS Apar_0811 NC_013203.1 892494 893420 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: bsu:BSU15540 dihydroorotate dehydrogenase 1B; dihydroorotate dehydrogenase family protein complement(892494..893420) Atopobium parvulum DSM 20469 8413676 YP_003179832.1 CDS Apar_0812 NC_013203.1 893414 894208 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dal:Dalk_1941 oxidoreductase FAD/NAD(P)- binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(893414..894208) Atopobium parvulum DSM 20469 8413677 YP_003179833.1 CDS Apar_0813 NC_013203.1 894208 895515 R KEGG: gur:Gura_1857 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type complement(894208..895515) Atopobium parvulum DSM 20469 8413678 YP_003179834.1 CDS Apar_0814 NC_013203.1 895499 896434 R TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: pca:Pcar_1615 aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(895499..896434) Atopobium parvulum DSM 20469 8413679 YP_003179835.1 CDS Apar_0815 NC_013203.1 896434 897009 R PFAM: phosphoribosyltransferase; KEGG: bha:BH2541 pyrimidine regulatory protein PyrR; uracil phosphoribosyltransferase complement(896434..897009) Atopobium parvulum DSM 20469 8413680 YP_003179836.1 CDS Apar_0816 NC_013203.1 897163 897927 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: apl:APL_1464 ABC transporter integral membrane subunit; ABC transporter-like protein complement(897163..897927) Atopobium parvulum DSM 20469 8413681 YP_003179837.1 CDS Apar_0817 NC_013203.1 898343 899371 R KEGG: scl:sce3081 lactose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator complement(898343..899371) Atopobium parvulum DSM 20469 8413682 YP_003179838.1 CDS Apar_0818 NC_013203.1 899639 900697 D PFAM: Aldose 1-epimerase; KEGG: predicted protein ; K01785 aldose 1-epimerase; aldose 1-epimerase 899639..900697 Atopobium parvulum DSM 20469 8413683 YP_003179839.1 CDS Apar_0819 NC_013203.1 900739 901950 D PFAM: GHMP kinase; KEGG: dde:Dde_3653 galactokinase; galactokinase 900739..901950 Atopobium parvulum DSM 20469 8413684 YP_003179840.1 CDS Apar_0820 NC_013203.1 901941 903560 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 901941..903560 Atopobium parvulum DSM 20469 8413685 YP_003179841.1 CDS Apar_0821 NC_013203.1 904154 905809 R PFAM: inner-membrane translocator; KEGG: apj:APJL_1450 beta-methylgalactoside transporter inner membrane component; monosaccharide-transporting ATPase complement(904154..905809) Atopobium parvulum DSM 20469 8413686 YP_003179842.1 CDS Apar_0822 NC_013203.1 905825 907333 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hap:HAPS_0443 galactose ABC transporter transporter ATP-binding protein; ABC transporter-like protein complement(905825..907333) Atopobium parvulum DSM 20469 8413687 YP_003179843.1 CDS Apar_0823 NC_013203.1 907438 908739 R KEGG: asa:ASA_0214 ABC-type galactose transporter, periplasmic binding protein; sugar ABC transporter periplasmic protein complement(907438..908739) Atopobium parvulum DSM 20469 8413688 YP_003179844.1 CDS Apar_0824 NC_013203.1 909231 910598 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bcr:BCAH187_A4426 RNA polymerase sigma-43 factor; RpoD subfamily RNA polymerase sigma-70 subunit complement(909231..910598) Atopobium parvulum DSM 20469 8413690 YP_003179845.1 CDS Apar_0825 NC_013203.1 910719 912686 R KEGG: pca:Pcar_2679 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase complement(910719..912686) Atopobium parvulum DSM 20469 8413691 YP_003179846.1 CDS Apar_0826 NC_013203.1 912676 913713 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: rso:RSc2457 bifunctional riboflavin kinase/FMN adenylyltransferase; riboflavin biosynthesis protein RibF complement(912676..913713) Atopobium parvulum DSM 20469 8413692 YP_003179847.1 CDS Apar_0827 NC_013203.1 913723 914664 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: pca:Pcar_1559 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(913723..914664) Atopobium parvulum DSM 20469 8413693 YP_003179848.1 CDS Apar_0828 NC_013203.1 914665 915684 R PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pca:Pcar_1558 exopolyphosphatase related protein; phosphoesterase RecJ domain-containing protein complement(914665..915684) Atopobium parvulum DSM 20469 8413694 YP_003179849.1 CDS Apar_0829 NC_013203.1 915689 916099 R TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: aha:AHA_3302 ribosome-binding factor A; ribosome-binding factor A complement(915689..916099) Atopobium parvulum DSM 20469 8413695 YP_003179850.1 CDS Apar_0830 NC_013203.1 916111 918750 R TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; GTP-binding protein HSR1-related; KEGG: gme:Gmet_1586 translation initiation factor IF-2; translation initiation factor IF-2 complement(916111..918750) Atopobium parvulum DSM 20469 8413696 YP_003179851.1 CDS Apar_0831 NC_013203.1 918794 920035 R KEGG: bha:BH2416 transcription elongation factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; SMART: KH domain protein; NusA antitermination factor complement(918794..920035) Atopobium parvulum DSM 20469 8413697 YP_003179852.1 CDS Apar_0832 NC_013203.1 920052 920546 R PFAM: protein of unknown function DUF150; KEGG: aeh:Mlg_1950 hypothetical protein; hypothetical protein complement(920052..920546) Atopobium parvulum DSM 20469 8413698 YP_003179853.1 CDS Apar_0833 NC_013203.1 920671 923244 R TIGRFAM: leucyl-tRNA synthetase; KEGG: gme:Gmet_2300 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(920671..923244) Atopobium parvulum DSM 20469 8413699 YP_003179854.1 CDS Apar_0834 NC_013203.1 923320 924843 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(923320..924843) Atopobium parvulum DSM 20469 8413700 YP_003179855.1 CDS Apar_0835 NC_013203.1 924919 926226 R PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_1099 glycosyl transferase family protein; glycosyl transferase family protein complement(924919..926226) Atopobium parvulum DSM 20469 8413701 YP_003179856.1 CDS Apar_0836 NC_013203.1 926352 927950 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mgm:Mmc1_0732 ABC transporter related; ABC transporter-like protein complement(926352..927950) Atopobium parvulum DSM 20469 8413702 YP_003179857.1 CDS Apar_0837 NC_013203.1 927970 929553 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pau:PA14_40240 putative ATP-binding/permease fusion ABC transporter; ABC transporter-like protein complement(927970..929553) Atopobium parvulum DSM 20469 8413703 YP_003179858.1 CDS Apar_0838 NC_013203.1 929724 930545 D PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0793 two-component sensor response regulator; AraC family transcriptional regulator 929724..930545 Atopobium parvulum DSM 20469 8413704 YP_003179859.1 CDS Apar_0839 NC_013203.1 930551 931561 R KEGG: bsu:BSU15460 hypothetical protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase complement(930551..931561) Atopobium parvulum DSM 20469 8413705 YP_003179860.1 CDS Apar_0840 NC_013203.1 931554 932072 R TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: btr:Btr_0010 hypothetical protein; lipoprotein signal peptidase complement(931554..932072) Atopobium parvulum DSM 20469 8413706 YP_003179861.1 CDS Apar_0841 NC_013203.1 932073 934871 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: dde:Dde_2142 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(932073..934871) Atopobium parvulum DSM 20469 8413707 YP_003179862.1 CDS Apar_0842 NC_013203.1 935340 937274 D KEGG: pca:Pcar_0997 ATP-dependent zinc protease/cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; peptidase M41 FtsH extracellular; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 935340..937274 Atopobium parvulum DSM 20469 8413708 YP_003179863.1 CDS Apar_0843 NC_013203.1 937360 938202 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mlo:mlr2808 hypothetical protein; tRNA/rRNA methyltransferase SpoU complement(937360..938202) Atopobium parvulum DSM 20469 8413709 YP_003179864.1 CDS Apar_0844 NC_013203.1 938199 938627 R KEGG: bar:GBAA1022 DNA-binding protein; TIGRFAM: transcriptional regulator, AbrB family; PFAM: helix-turn-helix domain protein; SpoVT/AbrB domain protein; SMART: helix-turn-helix domain protein; XRE family transcriptional regulator complement(938199..938627) Atopobium parvulum DSM 20469 8413710 YP_003179865.1 CDS Apar_0845 NC_013203.1 938624 939700 R KEGG: bja:blr4337 hypothetical protein; hypothetical protein complement(938624..939700) Atopobium parvulum DSM 20469 8413711 YP_003179866.1 CDS Apar_0846 NC_013203.1 940301 941980 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bcr:BCAH187_A3259 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 940301..941980 Atopobium parvulum DSM 20469 8413712 YP_003179867.1 CDS Apar_0847 NC_013203.1 942048 942701 R hypothetical protein complement(942048..942701) Atopobium parvulum DSM 20469 8413713 YP_003179868.1 CDS Apar_0848 NC_013203.1 942765 943145 R KEGG: hso:HS_0795 hypothetical protein; hypothetical protein complement(942765..943145) Atopobium parvulum DSM 20469 8413714 YP_003179869.1 CDS Apar_0849 NC_013203.1 943255 944634 R KEGG: bha:BH2484 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(943255..944634) Atopobium parvulum DSM 20469 8413715 YP_003179870.1 CDS Apar_0850 NC_013203.1 944634 945539 R KEGG: tgr:Tgr7_2988 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(944634..945539) Atopobium parvulum DSM 20469 8413716 YP_003179871.1 CDS Apar_0851 NC_013203.1 945539 949078 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: bha:BH2487 chromosome segregation SMC protein; chromosome segregation protein SMC complement(945539..949078) Atopobium parvulum DSM 20469 8413717 YP_003179872.1 CDS Apar_0852 NC_013203.1 949096 949827 R KEGG: glo:Glov_1945 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III complement(949096..949827) Atopobium parvulum DSM 20469 8413718 YP_003179873.1 CDS Apar_0853 NC_013203.1 949841 950077 R PFAM: phosphopantetheine-binding; KEGG: bsu:BSU15920 acyl carrier protein; phosphopantetheine-binding protein complement(949841..950077) Atopobium parvulum DSM 20469 8413719 YP_003179874.1 CDS Apar_0854 NC_013203.1 950231 951214 R TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: bcb:BCB4264_A3952 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX complement(950231..951214) Atopobium parvulum DSM 20469 8413720 YP_003179875.1 CDS Apar_0855 NC_013203.1 951291 951470 R TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: gur:Gura_1873 50S ribosomal protein L32; 50S ribosomal protein L32 complement(951291..951470) Atopobium parvulum DSM 20469 8413721 YP_003179876.1 CDS Apar_0856 NC_013203.1 951618 952187 R PFAM: protein of unknown function DUF177; KEGG: dde:Dde_2426 hypothetical protein; hypothetical protein complement(951618..952187) Atopobium parvulum DSM 20469 8413722 YP_003179877.1 CDS Apar_0857 NC_013203.1 952193 952690 R KEGG: hypothetical protein; hypothetical protein complement(952193..952690) Atopobium parvulum DSM 20469 8413723 YP_003179878.1 CDS Apar_0858 NC_013203.1 952817 953329 R KEGG: tgr:Tgr7_0298 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(952817..953329) Atopobium parvulum DSM 20469 8413724 YP_003179879.1 CDS Apar_0859 NC_013203.1 953335 953913 R TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: pzu:PHZ_c3166 N6-adenine-specific methylase; methyltransferase complement(953335..953913) Atopobium parvulum DSM 20469 8413725 YP_003179880.1 CDS Apar_0860 NC_013203.1 953964 956156 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicase ; helicase domain protein; KEGG: ret:RHE_CH02093 ATP-dependent DNA helicase protein; helicase domain-containing protein complement(953964..956156) Atopobium parvulum DSM 20469 8413726 YP_003179881.1 CDS Apar_0861 NC_013203.1 956160 957824 R PFAM: Dak phosphatase; KEGG: bha:BH2498 hypothetical protein; Dak phosphatase complement(956160..957824) Atopobium parvulum DSM 20469 8413727 YP_003179882.1 CDS Apar_0862 NC_013203.1 957863 958210 R PFAM: protein of unknown function DUF322; KEGG: bsu:BSU15830 hypothetical protein; hypothetical protein complement(957863..958210) Atopobium parvulum DSM 20469 8413728 YP_003179883.1 CDS Apar_0863 NC_013203.1 958494 958682 D TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dal:Dalk_2403 ribosomal protein L28; 50S ribosomal protein L28 958494..958682 Atopobium parvulum DSM 20469 8413729 YP_003179884.1 CDS Apar_0864 NC_013203.1 958827 960191 R TIGRFAM: thiamine pyrophosphokinase; HAD- superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; Thiamin pyrophosphokinase catalytic region; KEGG: psb:Psyr_5006 HAD family hydrolase; thiamine pyrophosphokinase complement(958827..960191) Atopobium parvulum DSM 20469 8413730 YP_003179885.1 CDS Apar_0865 NC_013203.1 960291 960476 D TIGRFAM: regulatory protein, FmdB family; KEGG: lip:LI0996 hypothetical protein; FmdB family regulatory protein 960291..960476 Atopobium parvulum DSM 20469 8413731 YP_003179886.1 CDS Apar_0866 NC_013203.1 960553 961944 R PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: aba:Acid345_4229 sun protein; NusB/RsmB/TIM44 complement(960553..961944) Atopobium parvulum DSM 20469 8413732 YP_003179887.1 CDS Apar_0867 NC_013203.1 961947 962867 R KEGG: mca:MCA2844 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase complement(961947..962867) Atopobium parvulum DSM 20469 8413733 YP_003179888.1 CDS Apar_0868 NC_013203.1 962876 963418 R KEGG: hiq:CGSHiGG_06235 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(962876..963418) Atopobium parvulum DSM 20469 8413734 YP_003179889.1 CDS Apar_0869 NC_013203.1 963427 965739 R KEGG: bsu:BSU15710 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; PhnA protein ; type III restriction protein res subunit; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' complement(963427..965739) Atopobium parvulum DSM 20469 8413735 YP_003179890.1 CDS Apar_0870 NC_013203.1 965753 969250 R PFAM: UvrD/REP helicase; KEGG: bcr:BCAH187_A1297 ATP-dependent nuclease, subunit A; UvrD/REP helicase complement(965753..969250) Atopobium parvulum DSM 20469 8413736 YP_003179891.1 CDS Apar_0871 NC_013203.1 969257 972385 R KEGG: sus:Acid_0029 ATP-dependent nuclease subunit B-like protein; hypothetical protein complement(969257..972385) Atopobium parvulum DSM 20469 8413737 YP_003179892.1 CDS Apar_0872 NC_013203.1 972492 973331 D PFAM: protein of unknown function DUF328; KEGG: cjd:JJD26997_0804 hypothetical protein; hypothetical protein 972492..973331 Atopobium parvulum DSM 20469 8413738 YP_003179893.1 CDS Apar_0873 NC_013203.1 973351 974481 R PFAM: acyltransferase 3; KEGG: ban:BA5704 hypothetical protein; acyltransferase 3 complement(973351..974481) Atopobium parvulum DSM 20469 8413739 YP_003179894.1 CDS Apar_0874 NC_013203.1 974554 975780 D hypothetical protein 974554..975780 Atopobium parvulum DSM 20469 8413740 YP_003179895.1 CDS Apar_0875 NC_013203.1 975749 976126 R PFAM: membrane protein of unknown function; KEGG: gur:Gura_2280 membrane protein of unknown function; hypothetical protein complement(975749..976126) Atopobium parvulum DSM 20469 8413741 YP_003179896.1 CDS Apar_0876 NC_013203.1 976195 976467 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: vsa:VSAL_II0090 PTS system, fructose-specific IIA/FPR component; phosphotransferase system, phosphocarrier protein HPr complement(976195..976467) Atopobium parvulum DSM 20469 8413742 YP_003179897.1 CDS Apar_0877 NC_013203.1 976651 977961 D KEGG: viral A-type inclusion protein; hypothetical protein 976651..977961 Atopobium parvulum DSM 20469 8413743 YP_003179898.1 CDS Apar_0878 NC_013203.1 978070 979233 R TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: bcb:BCB4264_A4537 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase complement(978070..979233) Atopobium parvulum DSM 20469 8413744 YP_003179899.1 CDS Apar_0879 NC_013203.1 979223 979843 R PFAM: protein of unknown function DUF208; KEGG: ppd:Ppro_1651 hypothetical protein; hypothetical protein complement(979223..979843) Atopobium parvulum DSM 20469 8413745 YP_003179900.1 CDS Apar_0880 NC_013203.1 979855 980721 R PFAM: Abortive infection protein; KEGG: bcy:Bcer98_1778 abortive infection protein; abortive infection protein complement(979855..980721) Atopobium parvulum DSM 20469 8413746 YP_003179901.1 CDS Apar_0881 NC_013203.1 980849 982888 D PFAM: tRNA synthetase class I (M); KEGG: scl:sce8081 hypothetical protein; Methionine--tRNA ligase 980849..982888 Atopobium parvulum DSM 20469 8413747 YP_003179902.1 CDS Apar_0882 NC_013203.1 982910 983806 D PFAM: alpha/beta hydrolase fold; KEGG: bam:Bamb_6102 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 982910..983806 Atopobium parvulum DSM 20469 8413748 YP_003179903.1 CDS Apar_0883 NC_013203.1 983950 984414 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dvm:DvMF_2265 transcriptional regulator, MarR family; MarR family transcriptional regulator 983950..984414 Atopobium parvulum DSM 20469 8413749 YP_003179904.1 CDS Apar_0884 NC_013203.1 984399 986300 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: ban:BA2443 ABC transporter, ATP- binding/permease protein; ABC transporter-like protein 984399..986300 Atopobium parvulum DSM 20469 8413750 YP_003179905.1 CDS Apar_0885 NC_013203.1 986293 988209 D PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: bcr:BCAH187_A2539 ABC transporter, permease/ATP-binding protein; ABC transporter-like protein 986293..988209 Atopobium parvulum DSM 20469 8413751 YP_003179906.1 CDS Apar_0886 NC_013203.1 988284 988994 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gph1; phosphoglycolate phosphatase protein ; K01091 phosphoglycolate phosphatase; haloacid dehalogenase domain-containing protein hydrolase complement(988284..988994) Atopobium parvulum DSM 20469 8413752 YP_003179907.1 CDS Apar_0887 NC_013203.1 989169 991436 D KEGG: TPR Domain containing protein; hypothetical protein 989169..991436 Atopobium parvulum DSM 20469 8413753 YP_003179908.1 CDS Apar_0888 NC_013203.1 991538 994210 R PFAM: cell wall hydrolase/autolysin; putative cell wall binding repeat-containing protein; KEGG: hypothetical protein; cell wall hydrolase/autolysin complement(991538..994210) Atopobium parvulum DSM 20469 8413754 YP_003179909.1 CDS Apar_0889 NC_013203.1 994325 994987 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: haloacid dehalogenase-like hydrolase family protein; HAD-superfamily hydrolase 994325..994987 Atopobium parvulum DSM 20469 8413755 YP_003179910.1 CDS Apar_0890 NC_013203.1 995076 995279 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bha:BH3610 cold-shock protein; cold-shock DNA-binding domain-containing protein complement(995076..995279) Atopobium parvulum DSM 20469 8413756 YP_003179911.1 CDS Apar_0891 NC_013203.1 995616 997904 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; putative cell wall binding repeat-containing protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease; ErfK/YbiS/YcfS/YnhG family protein 995616..997904 Atopobium parvulum DSM 20469 8413757 YP_003179912.1 CDS Apar_0892 NC_013203.1 997986 998381 R hypothetical protein complement(997986..998381) Atopobium parvulum DSM 20469 8413758 YP_003179913.1 CDS Apar_0893 NC_013203.1 998396 999463 R KEGG: ppd:Ppro_2321 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB complement(998396..999463) Atopobium parvulum DSM 20469 8413759 YP_003179914.1 CDS Apar_0894 NC_013203.1 999463 1000095 R KEGG: ppg:PputGB1_4202 Holliday junction DNA helicase motor protein; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA complement(999463..1000095) Atopobium parvulum DSM 20469 8413760 YP_003179915.1 CDS Apar_0895 NC_013203.1 1000092 1000595 R KEGG: mgm:Mmc1_0478 Holliday junction endonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC complement(1000092..1000595) Atopobium parvulum DSM 20469 8413761 YP_003179916.1 CDS Apar_0896 NC_013203.1 1000657 1002444 R KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase; amidohydrolase complement(1000657..1002444) Atopobium parvulum DSM 20469 8413762 YP_003179917.1 CDS Apar_0897 NC_013203.1 1002575 1002940 R PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: glo:Glov_2591 desulfoferrodoxin; Desulfoferrodoxin ferrous iron-binding subunit complement(1002575..1002940) Atopobium parvulum DSM 20469 8413763 YP_003179918.1 CDS Apar_0898 NC_013203.1 1003050 1006886 R KEGG: dps:DP1663 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1003050..1006886) Atopobium parvulum DSM 20469 8413764 YP_003179919.1 CDS Apar_0899 NC_013203.1 1007215 1008573 D PFAM: peptidase C1B bleomycin hydrolase; KEGG: BLMH; bleomycin hydrolase; K01372 bleomycin hydrolase; Bleomycin hydrolase 1007215..1008573 Atopobium parvulum DSM 20469 8413765 YP_003179920.1 CDS Apar_0900 NC_013203.1 1008648 1010117 D PFAM: peptidase C1B bleomycin hydrolase; KEGG: YALI0F17974p ; K01372 bleomycin hydrolase; Bleomycin hydrolase 1008648..1010117 Atopobium parvulum DSM 20469 8413766 YP_003179921.1 CDS Apar_0901 NC_013203.1 1010352 1010996 D hypothetical protein 1010352..1010996 Atopobium parvulum DSM 20469 8413767 YP_003179922.1 CDS Apar_0902 NC_013203.1 1010993 1011172 D hypothetical protein 1010993..1011172 Atopobium parvulum DSM 20469 8413768 YP_003179923.1 CDS Apar_0903 NC_013203.1 1011232 1011873 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bsu:BSU35510 hypothetical protein; hypothetical protein complement(1011232..1011873) Atopobium parvulum DSM 20469 8413769 YP_003179924.1 CDS Apar_0904 NC_013203.1 1011895 1012425 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: bcz:BCZK0859 PTS system, beta-glucoside- specific enzyme II, ABC component; PTS system glucose subfamily transporter subunit IIA complement(1011895..1012425) Atopobium parvulum DSM 20469 8413770 YP_003179925.1 CDS Apar_0905 NC_013203.1 1013067 1013876 R PFAM: Methyltransferase type 12; KEGG: GK17905 gene product from transcript GK17905- RA; type 12 methyltransferase complement(1013067..1013876) Atopobium parvulum DSM 20469 8413772 YP_003179926.1 CDS Apar_0906 NC_013203.1 1013945 1015798 D KEGG: histone acethyltransferase-like protein; PFAM: Radical SAM domain protein; GCN5-related N- acetyltransferase; SMART: Elongator protein 3/MiaB/NifB; Histone acetyltransferase 1013945..1015798 Atopobium parvulum DSM 20469 8413773 YP_003179927.1 CDS Apar_0907 NC_013203.1 1015936 1017579 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; tryptophan halogenase; FAD dependent oxidoreductase; KEGG: ppr:PBPRB1551 putative thioredoxin reductase; thioredoxin-disulfide reductase complement(1015936..1017579) Atopobium parvulum DSM 20469 8413774 YP_003179928.1 CDS Apar_0908 NC_013203.1 1017596 1018159 R KEGG: bpy:Bphyt_5403 peroxiredoxin; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin complement(1017596..1018159) Atopobium parvulum DSM 20469 8413775 YP_003179929.1 CDS Apar_0909 NC_013203.1 1018664 1019224 D hypothetical protein 1018664..1019224 Atopobium parvulum DSM 20469 8413777 YP_003179930.1 CDS Apar_0910 NC_013203.1 1019219 1019422 R hypothetical protein complement(1019219..1019422) Atopobium parvulum DSM 20469 8413778 YP_003179931.1 CDS Apar_0911 NC_013203.1 1019509 1020807 R PFAM: conserved hypothetical protein; KEGG: ilo:IL0119 hypothetical protein; hypothetical protein complement(1019509..1020807) Atopobium parvulum DSM 20469 8413779 YP_003179932.1 CDS Apar_0912 NC_013203.1 1020915 1022000 R KEGG: sdn:Sden_1828 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase complement(1020915..1022000) Atopobium parvulum DSM 20469 8413780 YP_003179933.1 CDS Apar_0913 NC_013203.1 1021988 1023193 R PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afe:Lferr_0188 aminotransferase class V; class V aminotransferase complement(1021988..1023193) Atopobium parvulum DSM 20469 8413781 YP_003179934.1 CDS Apar_0914 NC_013203.1 1023286 1024224 R PFAM: protein of unknown function DUF1113; KEGG: glo:Glov_2883 metal dependent phosphohydrolase; hypothetical protein complement(1023286..1024224) Atopobium parvulum DSM 20469 8413782 YP_003179935.1 CDS Apar_0915 NC_013203.1 1024869 1025600 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; KEGG: ppr:PBPRA0351 anti-anti-sigma regulatory factor; anti-sigma-factor antagonist complement(1024869..1025600) Atopobium parvulum DSM 20469 8413785 YP_003179936.1 CDS Apar_0916 NC_013203.1 1025666 1028011 R PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; KEGG: gme:Gmet_2062 serine phosphatase; putative PAS/PAC sensor protein complement(1025666..1028011) Atopobium parvulum DSM 20469 8413786 YP_003179937.1 CDS Apar_0917 NC_013203.1 1028299 1030077 R PFAM: extracellular solute-binding protein family 5; KEGG: mes:Meso_1835 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(1028299..1030077) Atopobium parvulum DSM 20469 8413788 YP_003179938.1 CDS Apar_0918 NC_013203.1 1030237 1032270 R KEGG: oca:OCAR_7522 glutathione import ATP-binding protein GsiA; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1030237..1032270) Atopobium parvulum DSM 20469 8413789 YP_003179939.1 CDS Apar_0919 NC_013203.1 1032270 1033340 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1032270..1033340) Atopobium parvulum DSM 20469 8413790 YP_003179940.1 CDS Apar_0920 NC_013203.1 1033351 1034343 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1834 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1033351..1034343) Atopobium parvulum DSM 20469 8413791 YP_003179941.1 CDS Apar_0921 NC_013203.1 1034768 1035019 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: vsa:VSAL_I0595 protein-export membrane protein SecG (preprotein translocase band subunit); preprotein translocase subunit SecG complement(1034768..1035019) Atopobium parvulum DSM 20469 8413792 YP_003179942.1 CDS Apar_0922 NC_013203.1 1035193 1035960 R KEGG: ank:AnaeK_2335 triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase complement(1035193..1035960) Atopobium parvulum DSM 20469 8413793 YP_003179943.1 CDS Apar_0923 NC_013203.1 1035953 1037143 R PFAM: phosphoglycerate kinase; KEGG: bsu:BSU33930 phosphoglycerate kinase; phosphoglycerate kinase complement(1035953..1037143) Atopobium parvulum DSM 20469 8413794 YP_003179944.1 CDS Apar_0924 NC_013203.1 1037230 1038255 R KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1037230..1038255) Atopobium parvulum DSM 20469 8413795 YP_003179945.1 CDS Apar_0925 NC_013203.1 1038348 1039316 R PFAM: protein of unknown function DUF199; KEGG: bcr:BCAH187_A5314 hypothetical protein; hypothetical protein complement(1038348..1039316) Atopobium parvulum DSM 20469 8413796 YP_003179946.1 CDS Apar_0926 NC_013203.1 1039330 1040247 R PFAM: conserved hypothetical protein; KEGG: bcr:BCAH187_A5316 hypothetical protein; hypothetical protein complement(1039330..1040247) Atopobium parvulum DSM 20469 8413797 YP_003179947.1 CDS Apar_0927 NC_013203.1 1040294 1040983 R PFAM: putative N-acetylmannosamine-6-phosphate epimerase; KEGG: ent:Ent638_3230 N-acetylmannosamine-6- phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase complement(1040294..1040983) Atopobium parvulum DSM 20469 8413798 YP_003179948.1 CDS Apar_0928 NC_013203.1 1041080 1042069 R PFAM: ROK family protein; KEGG: aba:Acid345_0003 glucokinase; ROK family protein complement(1041080..1042069) Atopobium parvulum DSM 20469 8413799 YP_003179949.1 CDS Apar_0929 NC_013203.1 1042085 1043008 R PFAM: dihydrodipicolinate synthetase; KEGG: rlt:Rleg2_4793 dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(1042085..1043008) Atopobium parvulum DSM 20469 8413800 YP_003179950.1 CDS Apar_0930 NC_013203.1 1043135 1044076 R PFAM: Acetyl xylan esterase; KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C deacetylase); Acetyl xylan esterase complement(1043135..1044076) Atopobium parvulum DSM 20469 8413801 YP_003179951.1 CDS Apar_0931 NC_013203.1 1044073 1045113 R PFAM: Acetyl xylan esterase; KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C deacetylase); Acetyl xylan esterase complement(1044073..1045113) Atopobium parvulum DSM 20469 8413802 YP_003179952.1 CDS Apar_0932 NC_013203.1 1045180 1046001 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: apa:APP7_0909 ABC transporter, ATP-binding subunit; ABC transporter-like protein complement(1045180..1046001) Atopobium parvulum DSM 20469 8413803 YP_003179953.1 CDS Apar_0933 NC_013203.1 1046002 1048041 R PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: hap:HAPS_1116 ABC-type oligopeptide transport systems, ATP-binding/permease; ABC transporter-like protein complement(1046002..1048041) Atopobium parvulum DSM 20469 8413804 YP_003179954.1 CDS Apar_0934 NC_013203.1 1048046 1049002 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hsm:HSM_0787 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1048046..1049002) Atopobium parvulum DSM 20469 8413805 YP_003179955.1 CDS Apar_0935 NC_013203.1 1049159 1050760 R PFAM: extracellular solute-binding protein family 5; KEGG: hdu:HD1669 putative ABC transporter periplasmic binding protein; family 5 extracellular solute-binding protein complement(1049159..1050760) Atopobium parvulum DSM 20469 8413806 YP_003179956.1 CDS Apar_0936 NC_013203.1 1051181 1051825 R hypothetical protein complement(1051181..1051825) Atopobium parvulum DSM 20469 8413807 YP_003179957.1 CDS Apar_0937 NC_013203.1 1052032 1052265 R hypothetical protein complement(1052032..1052265) Atopobium parvulum DSM 20469 8413808 YP_003179958.1 CDS Apar_0938 NC_013203.1 1052258 1054192 R KEGG: dal:Dalk_0774 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; excinuclease ABC subunit C complement(1052258..1054192) Atopobium parvulum DSM 20469 8413809 YP_003179959.1 CDS Apar_0939 NC_013203.1 1054317 1055951 R PFAM: virulence factor MVIN family protein; KEGG: dol:Dole_2327 integral membrane protein MviN; virulence factor MVIN family protein complement(1054317..1055951) Atopobium parvulum DSM 20469 8413810 YP_003179960.1 CDS Apar_0940 NC_013203.1 1055951 1056460 R TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sus:Acid_5432 YbaK/EbsC protein; ybaK/ebsC protein complement(1055951..1056460) Atopobium parvulum DSM 20469 8413811 YP_003179961.1 CDS Apar_0941 NC_013203.1 1056462 1059356 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bsu:BSU35160 excinuclease ABC subunit A; excinuclease ABC subunit A complement(1056462..1059356) Atopobium parvulum DSM 20469 8413812 YP_003179962.1 CDS Apar_0942 NC_013203.1 1059513 1059974 R PFAM: conserved hypothetical protein; KEGG: ppr:PBPRA2282 hypothetical protein; hypothetical protein complement(1059513..1059974) Atopobium parvulum DSM 20469 8413813 YP_003179963.1 CDS Apar_0943 NC_013203.1 1060093 1060941 D KEGG: par:Psyc_1426 ATP-binding protein; ATP-binding protein 1060093..1060941 Atopobium parvulum DSM 20469 8413814 YP_003179964.1 CDS Apar_0944 NC_013203.1 1060988 1062241 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: sun:SUN_2357 hypothetical protein; hypothetical protein 1060988..1062241 Atopobium parvulum DSM 20469 8413815 YP_003179965.1 CDS Apar_0945 NC_013203.1 1062243 1063913 D PFAM: FAD dependent oxidoreductase; KEGG: acr:Acry_0945 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1062243..1063913 Atopobium parvulum DSM 20469 8413816 YP_003179966.1 CDS Apar_0946 NC_013203.1 1063910 1066150 R KEGG: bcy:Bcer98_3710 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein; excinuclease ABC subunit B complement(1063910..1066150) Atopobium parvulum DSM 20469 8413817 YP_003179967.1 CDS Apar_0947 NC_013203.1 1066327 1068411 D SMART: Tetratricopeptide domain protein; hypothetical protein 1066327..1068411 Atopobium parvulum DSM 20469 8413818 YP_003179968.1 CDS Apar_0948 NC_013203.1 1068435 1069049 R KEGG: hypothetical protein LOC100024122; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(1068435..1069049) Atopobium parvulum DSM 20469 8413819 YP_003179969.1 CDS Apar_0949 NC_013203.1 1069061 1069690 R PFAM: ABC transporter related; KEGG: sil:SPO2689 iron ABC transporter, ATP-binding protein, putative; ABC transporter-like protein complement(1069061..1069690) Atopobium parvulum DSM 20469 8413820 YP_003179970.1 CDS Apar_0950 NC_013203.1 1069687 1070568 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nis:NIS_1592 sulfonate/nitrate ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(1069687..1070568) Atopobium parvulum DSM 20469 8413821 YP_003179971.1 CDS Apar_0951 NC_013203.1 1070558 1071574 R KEGG: tdn:Suden_1346 putative sulfonate/nitrate transport system substrate-binding protein; nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein complement(1070558..1071574) Atopobium parvulum DSM 20469 8413822 YP_003179972.1 CDS Apar_0952 NC_013203.1 1071708 1072769 R PFAM: peptidase M42 family protein; KEGG: bcy:Bcer98_0723 peptidase M42 family protein; peptidase M42 family protein complement(1071708..1072769) Atopobium parvulum DSM 20469 8413823 YP_003179973.1 CDS Apar_0953 NC_013203.1 1072779 1074029 R KEGG: vpa:VPA1193 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20; peptidase T complement(1072779..1074029) Atopobium parvulum DSM 20469 8413824 YP_003179974.1 CDS Apar_0954 NC_013203.1 1074092 1074886 R PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: mxa:MXAN_5086 class I glutamine amidotransferase family protein; peptidase C26 complement(1074092..1074886) Atopobium parvulum DSM 20469 8413825 YP_003179975.1 CDS Apar_0955 NC_013203.1 1075121 1076725 D PFAM: extracellular solute-binding protein family 5; KEGG: rsp:RSP_3255 ABC peptide transporter, periplasmic binding protein; 4-phytase 1075121..1076725 Atopobium parvulum DSM 20469 8413826 YP_003179976.1 CDS Apar_0956 NC_013203.1 1076820 1077932 R KEGG: bsu:BSU11370 oligopeptide ABC transporter ATP- binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1076820..1077932) Atopobium parvulum DSM 20469 8413827 YP_003179977.1 CDS Apar_0957 NC_013203.1 1077935 1079101 R KEGG: dde:Dde_1182 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1077935..1079101) Atopobium parvulum DSM 20469 8413828 YP_003179978.1 CDS Apar_0958 NC_013203.1 1079118 1080074 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cja:CJA_2055 oligopeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein complement(1079118..1080074) Atopobium parvulum DSM 20469 8413829 YP_003179979.1 CDS Apar_0959 NC_013203.1 1080074 1081009 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK4245 oligopeptide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein complement(1080074..1081009) Atopobium parvulum DSM 20469 8413830 YP_003179980.1 CDS Apar_0960 NC_013203.1 1081093 1082736 R PFAM: extracellular solute-binding protein family 5; KEGG: sme:SMa0104 ABC transporter, periplasmic solute-binding protein; family 5 extracellular solute-binding protein complement(1081093..1082736) Atopobium parvulum DSM 20469 8413831 YP_003179981.1 CDS Apar_0961 NC_013203.1 1083159 1086218 R TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; surface protein from Gram-positive cocci anchor region; KEGG: similar to zymogen granule membrane glycoprotein 2; LPXTG-motif cell wall anchor domain-containing protein complement(1083159..1086218) Atopobium parvulum DSM 20469 8413832 YP_003179982.1 CDS Apar_0962 NC_013203.1 1086608 1087864 R PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: bha:BH1636 30S ribosomal protein S1; RNA binding S1 domain-containing protein complement(1086608..1087864) Atopobium parvulum DSM 20469 8413833 YP_003179983.1 CDS Apar_0963 NC_013203.1 1088121 1088513 R PFAM: Heavy metal transport/detoxification protein; KEGG: bmj:BMULJ_05226 Cu2+-exporting ATPase; heavy metal transport/detoxification protein complement(1088121..1088513) Atopobium parvulum DSM 20469 8413834 YP_003179984.1 CDS Apar_0964 NC_013203.1 1088624 1089028 R PFAM: flavodoxin/nitric oxide synthase; KEGG: dde:Dde_3667 flavodoxin, short chain; flavodoxin/nitric oxide synthase complement(1088624..1089028) Atopobium parvulum DSM 20469 8413835 YP_003179985.1 CDS Apar_0965 NC_013203.1 1089113 1089859 R KEGG: pca:Pcar_0068 hypothetical protein; hypothetical protein complement(1089113..1089859) Atopobium parvulum DSM 20469 8413836 YP_003179986.1 CDS Apar_0966 NC_013203.1 1090178 1092346 R TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: dvu:DVU3332 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(1090178..1092346) Atopobium parvulum DSM 20469 8413837 YP_003179987.1 CDS Apar_0967 NC_013203.1 1092350 1092652 R hypothetical protein complement(1092350..1092652) Atopobium parvulum DSM 20469 8413838 YP_003179988.1 CDS Apar_0968 NC_013203.1 1093052 1093606 D PFAM: glutathione peroxidase; KEGG: nmn:NMCC_1530 glutathione peroxidase; glutathione peroxidase 1093052..1093606 Atopobium parvulum DSM 20469 8413839 YP_003179989.1 CDS Apar_0969 NC_013203.1 1093628 1094143 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: cps:CPS_3331 MarR family transcriptional regulator; MarR family transcriptional regulator 1093628..1094143 Atopobium parvulum DSM 20469 8413840 YP_003179990.1 CDS Apar_0970 NC_013203.1 1094151 1095323 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: msu:MS1293 MMT1 protein; cation diffusion facilitator family transporter 1094151..1095323 Atopobium parvulum DSM 20469 8413841 YP_003179991.1 CDS Apar_0971 NC_013203.1 1095668 1098328 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; nucleoside recognition domain protein; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; KEGG: ppr:PBPRB1904 ferrous ion transport protein B; ferrous iron transport protein B complement(1095668..1098328) Atopobium parvulum DSM 20469 8413842 YP_003179992.1 CDS Apar_0972 NC_013203.1 1098328 1098573 R PFAM: FeoA family protein; KEGG: ank:AnaeK_3367 FeoA family protein; FeoA family protein complement(1098328..1098573) Atopobium parvulum DSM 20469 8413843 YP_003179993.1 CDS Apar_0973 NC_013203.1 1098643 1098909 R PFAM: FeoA family protein; KEGG: dal:Dalk_1640 ferric uptake regulator, Fur family; FeoA family protein complement(1098643..1098909) Atopobium parvulum DSM 20469 8413844 YP_003179994.1 CDS Apar_0974 NC_013203.1 1099151 1102018 R PFAM: phosphoenolpyruvate carboxylase; KEGG: gme:Gmet_0304 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(1099151..1102018) Atopobium parvulum DSM 20469 8413845 YP_003179995.1 CDS Apar_0975 NC_013203.1 1102329 1103633 D PFAM: polysaccharide biosynthesis protein; KEGG: sus:Acid_4856 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1102329..1103633 Atopobium parvulum DSM 20469 8413846 YP_003179996.1 CDS Apar_0976 NC_013203.1 1103747 1104064 R PFAM: glutaredoxin; Glutathione S-transferase domain; KEGG: csa:Csal_3222 glutaredoxin; glutaredoxin complement(1103747..1104064) Atopobium parvulum DSM 20469 8413847 YP_003179997.1 CDS Apar_0977 NC_013203.1 1104358 1105548 R PFAM: protein of unknown function DUF523; purine or other phosphorylase family 1; KEGG: bsu:BSU23490 purine nucleoside phosphorylase; hypothetical protein complement(1104358..1105548) Atopobium parvulum DSM 20469 8413849 YP_003179998.1 CDS Apar_0978 NC_013203.1 1105562 1106410 R hypothetical protein complement(1105562..1106410) Atopobium parvulum DSM 20469 8413850 YP_003179999.1 CDS Apar_0979 NC_013203.1 1106545 1107231 R KEGG: scl:sce1707 histone H1 protein; hypothetical protein complement(1106545..1107231) Atopobium parvulum DSM 20469 8413851 YP_003180000.1 CDS Apar_0980 NC_013203.1 1107260 1108042 R PFAM: protein of unknown function DUF88; KEGG: nmu:Nmul_A2205 hypothetical protein; hypothetical protein complement(1107260..1108042) Atopobium parvulum DSM 20469 8413852 YP_003180001.1 CDS Apar_0981 NC_013203.1 1108069 1109133 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; Shikimate/quinate 5-dehydrogenase; NADP oxidoreductase coenzyme F420-dependent; KEGG: bsu:BSU13960 hypothetical protein; 3-hydroxyisobutyrate dehydrogenase complement(1108069..1109133) Atopobium parvulum DSM 20469 8413853 YP_003180002.1 CDS Apar_0982 NC_013203.1 1109209 1110237 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1951 DegV family protein; degV family protein complement(1109209..1110237) Atopobium parvulum DSM 20469 8413854 YP_003180003.1 CDS Apar_0983 NC_013203.1 1110227 1110817 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bcb:BCB4264_A5308 ribosomal subunit interface protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1110227..1110817) Atopobium parvulum DSM 20469 8413855 YP_003180004.1 CDS Apar_0984 NC_013203.1 1110955 1111887 R PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: bcn:Bcen_2527 extracellular solute-binding protein; family 3 extracellular solute-binding protein complement(1110955..1111887) Atopobium parvulum DSM 20469 8413856 YP_003180005.1 CDS Apar_0985 NC_013203.1 1112203 1112952 R KEGG: spe:Spro_4633 gluconate periplasmic binding protein; amidophosphoribosyltransferase-like protein complement(1112203..1112952) Atopobium parvulum DSM 20469 8413857 YP_003180006.1 CDS Apar_0986 NC_013203.1 1113046 1113807 R KEGG: bcy:Bcer98_2113 hypothetical protein; hypothetical protein complement(1113046..1113807) Atopobium parvulum DSM 20469 8413858 YP_003180007.1 CDS Apar_0987 NC_013203.1 1113901 1114368 D hypothetical protein 1113901..1114368 Atopobium parvulum DSM 20469 8413859 YP_003180008.1 CDS Apar_0988 NC_013203.1 1114391 1115875 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3323 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1114391..1115875) Atopobium parvulum DSM 20469 8413860 YP_003180009.1 CDS Apar_0989 NC_013203.1 1115872 1116786 R KEGG: bcz:BCZK3009 ABC transporter, permease; cobalt transport protein; hypothetical protein complement(1115872..1116786) Atopobium parvulum DSM 20469 8413861 YP_003180010.1 CDS Apar_0990 NC_013203.1 1116786 1117451 R KEGG: bcy:Bcer98_2116 hypothetical protein; hypothetical protein complement(1116786..1117451) Atopobium parvulum DSM 20469 8413862 YP_003180011.1 CDS Apar_0991 NC_013203.1 1117448 1121233 R SMART: Pyrrolo-quinoline quinone; KEGG: GK12566 gene product from transcript GK12566- RA; Pyrrolo-quinoline quinone complement(1117448..1121233) Atopobium parvulum DSM 20469 8413863 YP_003180012.1 CDS Apar_0992 NC_013203.1 1121238 1122053 R TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: gme:Gmet_1227 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(1121238..1122053) Atopobium parvulum DSM 20469 8413864 YP_003180013.1 CDS Apar_0993 NC_013203.1 1122075 1122632 R TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: ypm:YP_1414 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(1122075..1122632) Atopobium parvulum DSM 20469 8413865 YP_003180014.1 CDS Apar_0994 NC_013203.1 1122862 1123098 R PFAM: nitrogen-fixing NifU domain protein; KEGG: dal:Dalk_0569 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(1122862..1123098) Atopobium parvulum DSM 20469 8413866 YP_003180015.1 CDS Apar_0995 NC_013203.1 1123190 1125820 R PFAM: peptidase U32; KEGG: scl:sce2217 proteinase; peptidase U32 complement(1123190..1125820) Atopobium parvulum DSM 20469 8413867 YP_003180016.1 CDS Apar_0996 NC_013203.1 1125847 1126452 R KEGG: dal:Dalk_1489 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1125847..1126452) Atopobium parvulum DSM 20469 8413868 YP_003180017.1 CDS Apar_0997 NC_013203.1 1126569 1127249 D PFAM: glycosyl transferase family 2; KEGG: bcy:Bcer98_3944 glycosyl transferase family protein; glycosyl transferase family protein 1126569..1127249 Atopobium parvulum DSM 20469 8413869 YP_003180018.1 CDS Apar_0998 NC_013203.1 1127259 1127645 D KEGG: ade:Adeh_3052 hypothetical protein; hypothetical protein 1127259..1127645 Atopobium parvulum DSM 20469 8413870 YP_003180019.1 CDS Apar_0999 NC_013203.1 1127704 1128954 R PFAM: polysaccharide biosynthesis protein; KEGG: bcb:BCB4264_A5393 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1127704..1128954) Atopobium parvulum DSM 20469 8413871 YP_003180020.1 CDS Apar_1000 NC_013203.1 1128957 1129880 R PFAM: LicD family protein; KEGG: vpa:VP1322 putative LicD1 protein; LicD family protein complement(1128957..1129880) Atopobium parvulum DSM 20469 8413872 YP_003180021.1 CDS Apar_1001 NC_013203.1 1129956 1130747 D PFAM: glycosyl transferase family 2; KEGG: sse:Ssed_2991 glycosyl transferase family protein; glycosyl transferase family protein 1129956..1130747 Atopobium parvulum DSM 20469 8413873 YP_003180022.1 CDS Apar_1002 NC_013203.1 1130826 1131773 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: pca:Pcar_0941 hypothetical protein; hypothetical protein complement(1130826..1131773) Atopobium parvulum DSM 20469 8413874 YP_003180023.1 CDS Apar_1003 NC_013203.1 1131792 1133582 R PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; regulatory protein MarR; KEGG: mlo:mll5367 hypothetical protein; MarR family transcriptional regulator complement(1131792..1133582) Atopobium parvulum DSM 20469 8413875 YP_003180024.1 CDS Apar_1004 NC_013203.1 1133795 1134640 R PFAM: LicD family protein; KEGG: hiq:CGSHiGG_00265 lic-1 operon protein; LicD family protein complement(1133795..1134640) Atopobium parvulum DSM 20469 8413876 YP_003180025.1 CDS Apar_1005 NC_013203.1 1134640 1135707 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: maq:Maqu_2631 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1134640..1135707) Atopobium parvulum DSM 20469 8413877 YP_003180026.1 CDS Apar_1006 NC_013203.1 1135709 1136608 R KEGG: dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; polysaccharide biosynthesis protein CapD; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD- dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase complement(1135709..1136608) Atopobium parvulum DSM 20469 8413878 YP_003180027.1 CDS Apar_1007 NC_013203.1 1136610 1137512 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pmy:Pmen_4290 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(1136610..1137512) Atopobium parvulum DSM 20469 8413879 YP_003180028.1 CDS Apar_1008 NC_013203.1 1137588 1139765 R hypothetical protein complement(1137588..1139765) Atopobium parvulum DSM 20469 8413880 YP_003180029.1 CDS Apar_1009 NC_013203.1 1139799 1141010 R TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; KEGG: glo:Glov_3502 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(1139799..1141010) Atopobium parvulum DSM 20469 8413881 YP_003180030.1 CDS Apar_1010 NC_013203.1 1141173 1143305 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase; penicillin-binding protein 1141173..1143305 Atopobium parvulum DSM 20469 8413882 YP_003180031.1 CDS Apar_1011 NC_013203.1 1143417 1143857 R PFAM: arginine repressor; KEGG: sus:Acid_2503 ArgR family transcriptional regulator; arginine repressor ArgR complement(1143417..1143857) Atopobium parvulum DSM 20469 8413883 YP_003180032.1 CDS Apar_1012 NC_013203.1 1144080 1145129 D hypothetical protein 1144080..1145129 Atopobium parvulum DSM 20469 8413884 YP_003180033.1 CDS Apar_1013 NC_013203.1 1145177 1146898 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcb:BCB4264_A5051 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(1145177..1146898) Atopobium parvulum DSM 20469 8413885 YP_003180034.1 CDS Apar_1014 NC_013203.1 1147246 1149528 D PFAM: THUMP domain protein; putative RNA methylase; KEGG: mca:MCA0712 23S rRNA m(2)G2445 methyltransferase; THUMP domain-containing protein 1147246..1149528 Atopobium parvulum DSM 20469 8413886 YP_003180035.1 CDS Apar_1015 NC_013203.1 1149645 1151927 D PFAM: K potassium transporter; KEGG: lpp:lpp2446 hypothetical protein; K potassium transporter 1149645..1151927 Atopobium parvulum DSM 20469 8413887 YP_003180036.1 CDS Apar_1016 NC_013203.1 1152055 1152957 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: bsu:BSU36290 hypothetical protein; HAD-superfamily hydrolase complement(1152055..1152957) Atopobium parvulum DSM 20469 8413888 YP_003180037.1 CDS Apar_1017 NC_013203.1 1152970 1153257 R PFAM: amino acid-binding ACT domain protein; KEGG: ppd:Ppro_0612 hypothetical protein; ACT domain-containing protein complement(1152970..1153257) Atopobium parvulum DSM 20469 8413889 YP_003180038.1 CDS Apar_1018 NC_013203.1 1153295 1153795 R hypothetical protein complement(1153295..1153795) Atopobium parvulum DSM 20469 8413890 YP_003180039.1 CDS Apar_1019 NC_013203.1 1153917 1154639 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: swi:Swit_0024 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1153917..1154639) Atopobium parvulum DSM 20469 8413891 YP_003180040.1 CDS Apar_1020 NC_013203.1 1154650 1156473 R KEGG: asu:Asuc_1998 hypothetical protein; hypothetical protein complement(1154650..1156473) Atopobium parvulum DSM 20469 8413892 YP_003180041.1 CDS Apar_1021 NC_013203.1 1156602 1156871 D hypothetical protein 1156602..1156871 Atopobium parvulum DSM 20469 8413893 YP_003180042.1 CDS Apar_1022 NC_013203.1 1157148 1157375 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bte:BTH_I2731 DNA-binding protein; XRE family transcriptional regulator complement(1157148..1157375) Atopobium parvulum DSM 20469 8413895 YP_003180043.1 CDS Apar_1023 NC_013203.1 1157517 1159499 R KEGG: rec:RHECIAT_CH0000976 hypothetical protein; hypothetical protein complement(1157517..1159499) Atopobium parvulum DSM 20469 8413896 YP_003180044.1 CDS Apar_1024 NC_013203.1 1159555 1159827 R hypothetical protein complement(1159555..1159827) Atopobium parvulum DSM 20469 8413897 YP_003180045.1 CDS Apar_1026 NC_013203.1 1160203 1160661 R hypothetical protein complement(1160203..1160661) Atopobium parvulum DSM 20469 8413899 YP_003180046.1 CDS Apar_1027 NC_013203.1 1160658 1162655 R hypothetical protein complement(1160658..1162655) Atopobium parvulum DSM 20469 8413900 YP_003180047.1 CDS Apar_1028 NC_013203.1 1162678 1163154 R PFAM: TadE family protein; TadE family protein complement(1162678..1163154) Atopobium parvulum DSM 20469 8413901 YP_003180048.1 CDS Apar_1029 NC_013203.1 1163138 1163308 R hypothetical protein complement(1163138..1163308) Atopobium parvulum DSM 20469 8413902 YP_003180049.1 CDS Apar_1030 NC_013203.1 1163335 1163799 R hypothetical protein complement(1163335..1163799) Atopobium parvulum DSM 20469 8413903 YP_003180050.1 CDS Apar_1031 NC_013203.1 1163796 1163987 R hypothetical protein complement(1163796..1163987) Atopobium parvulum DSM 20469 8413904 YP_003180051.1 CDS Apar_1032 NC_013203.1 1163999 1164613 R PFAM: type II secretion system protein; KEGG: dps:DP1528 hypothetical protein; type II secretion system protein complement(1163999..1164613) Atopobium parvulum DSM 20469 8413905 YP_003180052.1 CDS Apar_1033 NC_013203.1 1164610 1165428 R PFAM: type II secretion system protein; KEGG: mxa:MXAN_4651 type II secretion system protein F domain protein; type II secretion system protein complement(1164610..1165428) Atopobium parvulum DSM 20469 8413906 YP_003180053.1 CDS Apar_1034 NC_013203.1 1165500 1166852 R PFAM: type II secretion system protein E; KEGG: swd:Swoo_0748 FHA domain-containing protein; type II secretion system protein E complement(1165500..1166852) Atopobium parvulum DSM 20469 8413907 YP_003180054.1 CDS Apar_1035 NC_013203.1 1166852 1168150 R KEGG: ppr:PBPRA0938 putative MinD-related protein; chromosome partitioning ATPase-like protein complement(1166852..1168150) Atopobium parvulum DSM 20469 8413908 YP_003180055.1 CDS Apar_1036 NC_013203.1 1168150 1168977 R PFAM: SAF domain protein; KEGG: bvi:Bcep1808_6475 SAF domain-containing protein; SAF domain-containing protein complement(1168150..1168977) Atopobium parvulum DSM 20469 8413909 YP_003180056.1 CDS Apar_1037 NC_013203.1 1169281 1170465 R PFAM: GTPase EngC; KEGG: dps:DP1382 hypothetical protein; GTPase EngC complement(1169281..1170465) Atopobium parvulum DSM 20469 8413910 YP_003180057.1 CDS Apar_1038 NC_013203.1 1170480 1173164 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcr:BCAH187_A0519 cation-transporting ATPase, E1-E2 family; P-type HAD superfamily ATPase complement(1170480..1173164) Atopobium parvulum DSM 20469 8413911 YP_003180058.1 CDS Apar_1039 NC_013203.1 1173418 1174422 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vha:VIBHAR_06767 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 1173418..1174422 Atopobium parvulum DSM 20469 8413912 YP_003180059.1 CDS Apar_1040 NC_013203.1 1174502 1175944 D KEGG: bcy:Bcer98_3282 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase 1174502..1175944 Atopobium parvulum DSM 20469 8413913 YP_003180060.1 CDS Apar_1041 NC_013203.1 1176037 1177770 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: rso:RSc1809 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1176037..1177770) Atopobium parvulum DSM 20469 8413914 YP_003180061.1 CDS Apar_1042 NC_013203.1 1177785 1179584 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: pde:Pden_1493 ABC transporter related; ABC transporter-like protein complement(1177785..1179584) Atopobium parvulum DSM 20469 8413915 YP_003180062.1 CDS Apar_1043 NC_013203.1 1179914 1180456 D PFAM: ubiquitin-associated- domain-containing protein; KEGG: mmr:Mmar10_1381 elongation factor Ts; ubiquitin-associated- domain-containing protein 1179914..1180456 Atopobium parvulum DSM 20469 8413916 YP_003180063.1 CDS Apar_1044 NC_013203.1 1180510 1181214 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A2673 DNA-binding response regulator; winged helix family two component transcriptional regulator 1180510..1181214 Atopobium parvulum DSM 20469 8413917 YP_003180064.1 CDS Apar_1045 NC_013203.1 1181195 1182568 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bha:BH0373 two-component sensor histidine kinase; histidine kinase 1181195..1182568 Atopobium parvulum DSM 20469 8413918 YP_003180065.1 CDS Apar_1046 NC_013203.1 1182660 1186097 R KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 4-alpha-glucanotransferase complement(1182660..1186097) Atopobium parvulum DSM 20469 8413919 YP_003180066.1 CDS Apar_1047 NC_013203.1 1186100 1187599 R TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: bat:BAS4758 glycogen synthase; glycogen/starch synthase complement(1186100..1187599) Atopobium parvulum DSM 20469 8413920 YP_003180067.1 CDS Apar_1048 NC_013203.1 1187602 1188705 R TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; KEGG: bha:BH1086 required for glycogen biosynthesis; glucose-1-phosphate adenylyltransferase, GlgD subunit complement(1187602..1188705) Atopobium parvulum DSM 20469 8413921 YP_003180068.1 CDS Apar_1049 NC_013203.1 1188705 1189853 R TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: bca:BCE_5027 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase complement(1188705..1189853) Atopobium parvulum DSM 20469 8413922 YP_003180069.1 CDS Apar_1050 NC_013203.1 1189929 1192358 R KEGG: bcb:BCB4264_A4995 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(1189929..1192358) Atopobium parvulum DSM 20469 8413923 YP_003180070.1 CDS Apar_1051 NC_013203.1 1192345 1194357 R KEGG: noc:Noc_0904 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(1192345..1194357) Atopobium parvulum DSM 20469 8413924 YP_003180071.1 CDS Apar_1052 NC_013203.1 1194672 1195898 R PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: shw:Sputw3181_0997 glycerol dehydrogenase; iron-containing alcohol dehydrogenase complement(1194672..1195898) Atopobium parvulum DSM 20469 8413925 YP_003180072.1 CDS Apar_1053 NC_013203.1 1195950 1196696 R hypothetical protein complement(1195950..1196696) Atopobium parvulum DSM 20469 8413926 YP_003180073.1 CDS Apar_1054 NC_013203.1 1196709 1199168 R KEGG: ppd:Ppro_2303 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(1196709..1199168) Atopobium parvulum DSM 20469 8413927 YP_003180074.1 CDS Apar_1055 NC_013203.1 1199199 1200266 R TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: phenylalanyl-tRNA synthetase, alpha subunit ; K01889 phenylalanyl-tRNA synthetase alpha chain; phenylalanyl-tRNA synthetase subunit alpha complement(1199199..1200266) Atopobium parvulum DSM 20469 8413928 YP_003180075.1 CDS Apar_1056 NC_013203.1 1200551 1201363 R PFAM: ABC-3 protein; transport system permease protein; KEGG: bcy:Bcer98_3008 ABC-3 protein; ABC-3 protein complement(1200551..1201363) Atopobium parvulum DSM 20469 8413929 YP_003180076.1 CDS Apar_1057 NC_013203.1 1201364 1202218 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00955 ABC-type Mn/Zn transport system ATPase component; ABC transporter-like protein complement(1201364..1202218) Atopobium parvulum DSM 20469 8413930 YP_003180077.1 CDS Apar_1058 NC_013203.1 1202256 1203257 R PFAM: periplasmic solute binding protein; KEGG: bsu:BSU02850 hypothetical protein; periplasmic solute binding protein complement(1202256..1203257) Atopobium parvulum DSM 20469 8413931 YP_003180078.1 CDS Apar_1059 NC_013203.1 1203579 1204226 R PFAM: protein of unknown function DUF421; KEGG: pmr:PMI0251 hypothetical protein; hypothetical protein complement(1203579..1204226) Atopobium parvulum DSM 20469 8413932 YP_003180079.1 CDS Apar_1060 NC_013203.1 1204231 1204674 R hypothetical protein complement(1204231..1204674) Atopobium parvulum DSM 20469 8413933 YP_003180080.1 CDS Apar_1061 NC_013203.1 1204714 1205880 R KEGG: bcr:BCAH187_A2109 N-acetylglucosamine-6- phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase complement(1204714..1205880) Atopobium parvulum DSM 20469 8413934 YP_003180081.1 CDS Apar_1062 NC_013203.1 1205938 1207104 R PFAM: sugar isomerase (SIS); KEGG: bcr:BCAH187_A2108 putative tagatose-6- phosphate ketose/aldose isomerase; sugar isomerase (SIS) complement(1205938..1207104) Atopobium parvulum DSM 20469 8413935 YP_003180082.1 CDS Apar_1063 NC_013203.1 1207127 1207855 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bca:BCE_1903 GntR family transcriptional regulator; GntR family transcriptional regulator complement(1207127..1207855) Atopobium parvulum DSM 20469 8413936 YP_003180083.1 CDS Apar_1064 NC_013203.1 1207910 1208989 R PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: plu:plu0837 PTS system, N-acetylgalactosamine- specific IID component (EIID-AGA) (N-acetylgalactosamine- permease IID component) (phosphotransferase enzyme II, D component); PTS system mannose/fructose/sorbose family transporter subunit IID complement(1207910..1208989) Atopobium parvulum DSM 20469 8413937 YP_003180084.1 CDS Apar_1065 NC_013203.1 1208979 1209785 R PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: vvy:VVA1513 phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC; PTS sorbose-specific transporter subunit IIC complement(1208979..1209785) Atopobium parvulum DSM 20469 8413938 YP_003180085.1 CDS Apar_1066 NC_013203.1 1209924 1210406 R KEGG: plu:plu0835 PTS system, N-acetylgalactosamine- specific IIB component 2 (EIIB-AGA') (N- acetylgalactosamine-permease IIB component 2) (phosphotransferase enzyme II, B component 2); TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB complement(1209924..1210406) Atopobium parvulum DSM 20469 8413939 YP_003180086.1 CDS Apar_1067 NC_013203.1 1210502 1210792 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: fph:Fphi_1512 preprotein translocase family protein; preprotein translocase subunit YajC complement(1210502..1210792) Atopobium parvulum DSM 20469 8413940 YP_003180087.1 CDS Apar_1068 NC_013203.1 1210826 1211266 R PFAM: PTS system fructose subfamily IIA component; KEGG: vfm:VFMJ11_A1119 PTS system, N- acetylgalactosamine-specific IIA component; PTS system fructose subfamily transporter subunit IIA complement(1210826..1211266) Atopobium parvulum DSM 20469 8413941 YP_003180088.1 CDS Apar_1069 NC_013203.1 1211804 1212739 D TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: bca:BCE_1907 tagatose-6-phosphate kinase; 1-phosphofructokinase 1211804..1212739 Atopobium parvulum DSM 20469 8413942 YP_003180089.1 CDS Apar_1070 NC_013203.1 1212876 1213727 D KEGG: spe:Spro_2579 tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 1212876..1213727 Atopobium parvulum DSM 20469 8413943 YP_003180090.1 CDS Apar_1071 NC_013203.1 1213830 1214876 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1213830..1214876) Atopobium parvulum DSM 20469 8413944 YP_003180091.1 CDS Apar_1072 NC_013203.1 1215013 1215372 D PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 hypothetical protein; hypothetical protein 1215013..1215372 Atopobium parvulum DSM 20469 8413945 YP_003180092.1 CDS Apar_1073 NC_013203.1 1215391 1216224 R KEGG: pfl:PFL_5156 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(1215391..1216224) Atopobium parvulum DSM 20469 8413946 YP_003180093.1 CDS Apar_1074 NC_013203.1 1216337 1216765 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dps:DP3115 peptidyl-prolyl cis-trans isomerase (FKBP-type); FKBP-type peptidylprolyl isomerase 1216337..1216765 Atopobium parvulum DSM 20469 8413947 YP_003180094.1 CDS Apar_1075 NC_013203.1 1216906 1218147 R KEGG: bha:BH3600 cell wall-binding protein; hypothetical protein complement(1216906..1218147) Atopobium parvulum DSM 20469 8413948 YP_003180095.1 CDS Apar_1076 NC_013203.1 1218304 1219365 R hypothetical protein complement(1218304..1219365) Atopobium parvulum DSM 20469 8413949 YP_003180096.1 CDS Apar_1077 NC_013203.1 1219410 1219973 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: kpn:KPN_02578 beta-glucoside-specific PTS system components IIABC; PTS system glucose subfamily transporter subunit IIA complement(1219410..1219973) Atopobium parvulum DSM 20469 8413950 YP_003180097.1 CDS Apar_1078 NC_013203.1 1220111 1222222 R PFAM: protein of unknown function DUF214; KEGG: bca:BCE_4984 ABC transporter, permease protein; hypothetical protein complement(1220111..1222222) Atopobium parvulum DSM 20469 8413951 YP_003180098.1 CDS Apar_1079 NC_013203.1 1222212 1223042 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcr:BCAH187_A4972 efflux ABC transporter, ATP- binding protein; ABC transporter-like protein complement(1222212..1223042) Atopobium parvulum DSM 20469 8413952 YP_003180099.1 CDS Apar_1080 NC_013203.1 1223195 1224190 D PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family protein; prolyl aminopeptidase 1223195..1224190 Atopobium parvulum DSM 20469 8413953 YP_003180100.1 CDS Apar_1081 NC_013203.1 1224200 1225240 R PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: bce:BC2539 two-component sensor kinase YxdK; histidine kinase complement(1224200..1225240) Atopobium parvulum DSM 20469 8413954 YP_003180101.1 CDS Apar_1082 NC_013203.1 1225247 1225918 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bha:BH3911 two-component response regulator; winged helix family two component transcriptional regulator complement(1225247..1225918) Atopobium parvulum DSM 20469 8413955 YP_003180102.1 CDS Apar_1083 NC_013203.1 1225940 1226959 R PFAM: TatD-related deoxyribonuclease; KEGG: hydrolase, TatD family protein ; K03424 Mg- dependent DNase; TatD-related deoxyribonuclease complement(1225940..1226959) Atopobium parvulum DSM 20469 8413956 YP_003180103.1 CDS Apar_1084 NC_013203.1 1226952 1227896 R KEGG: mgm:Mmc1_2325 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase complement(1226952..1227896) Atopobium parvulum DSM 20469 8413957 YP_003180104.1 CDS Apar_1085 NC_013203.1 1227899 1229509 R TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: glo:Glov_1949 methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(1227899..1229509) Atopobium parvulum DSM 20469 8413958 YP_003180105.1 CDS Apar_1086 NC_013203.1 1229659 1229769 D hypothetical protein 1229659..1229769 Atopobium parvulum DSM 20469 8413959 YP_003180106.1 CDS Apar_1087 NC_013203.1 1230325 1231230 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dal:Dalk_4641 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(1230325..1231230) Atopobium parvulum DSM 20469 8413960 YP_003180107.1 CDS Apar_1088 NC_013203.1 1231230 1232270 R KEGG: tmz:Tmz1t_0862 glucan 1,3-beta-glucosidase; glucan 1,3-beta-glucosidase complement(1231230..1232270) Atopobium parvulum DSM 20469 8413961 YP_003180108.1 CDS Apar_1089 NC_013203.1 1232363 1232791 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: hap:HAPS_1386 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl-tetrahydropterin synthase complement(1232363..1232791) Atopobium parvulum DSM 20469 8413962 YP_003180109.1 CDS Apar_1090 NC_013203.1 1232791 1234344 R PFAM: PSP1 domain protein; KEGG: pca:Pcar_1693 PSP-like protein; PSP1 domain-containing protein complement(1232791..1234344) Atopobium parvulum DSM 20469 8413963 YP_003180110.1 CDS Apar_1091 NC_013203.1 1234323 1235492 R KEGG: gsu:GSU2230 DNA polymerase III, delta prime subunit; DNA-directed DNA polymerase complement(1234323..1235492) Atopobium parvulum DSM 20469 8413964 YP_003180111.1 CDS Apar_1092 NC_013203.1 1235500 1236159 R KEGG: gme:Gmet_2318 thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(1235500..1236159) Atopobium parvulum DSM 20469 8413965 YP_003180112.1 CDS Apar_1093 NC_013203.1 1236350 1238863 R PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; KEGG: DNA topoisomerase III; K03165 DNA topoisomerase III; DNA topoisomerase type IA central domain-containing protein complement(1236350..1238863) Atopobium parvulum DSM 20469 8413966 YP_003180113.1 CDS Apar_1094 NC_013203.1 1238898 1239686 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dds:Ddes_1808 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC complement(1238898..1239686) Atopobium parvulum DSM 20469 8413967 YP_003180114.1 CDS Apar_1095 NC_013203.1 1239705 1240328 R PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dds:Ddes_1807 twin-arginine translocation protein, TatB subunit; sec-independent translocation protein mttA/Hcf106 complement(1239705..1240328) Atopobium parvulum DSM 20469 8413968 YP_003180115.1 CDS Apar_1096 NC_013203.1 1240404 1240715 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bha:BH0527 positive regulator of sigma-B activity (anti-anti-sigma factor); anti-sigma-factor antagonist complement(1240404..1240715) Atopobium parvulum DSM 20469 8413969 YP_003180116.1 CDS Apar_1097 NC_013203.1 1240725 1241501 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_1298 TPR repeat-containing protein; hypothetical protein complement(1240725..1241501) Atopobium parvulum DSM 20469 8413970 YP_003180117.1 CDS Apar_1098 NC_013203.1 1241590 1242981 R KEGG: scl:sce6239 hypothetical protein; GntR family transcriptional regulator complement(1241590..1242981) Atopobium parvulum DSM 20469 8413971 YP_003180118.1 CDS Apar_1099 NC_013203.1 1243054 1243323 D hypothetical protein 1243054..1243323 Atopobium parvulum DSM 20469 8413972 YP_003180119.1 CDS Apar_1100 NC_013203.1 1243400 1243684 D hypothetical protein 1243400..1243684 Atopobium parvulum DSM 20469 8413973 YP_003180120.1 CDS Apar_1101 NC_013203.1 1243687 1245063 R TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; KEGG: hpg:HPG27_1490 Na+/H+ antiporter; Na+/H+ antiporter NhaA complement(1243687..1245063) Atopobium parvulum DSM 20469 8413974 YP_003180121.1 CDS Apar_1102 NC_013203.1 1245269 1246126 D TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bcy:Bcer98_1951 DegV family protein; degV family protein 1245269..1246126 Atopobium parvulum DSM 20469 8413975 YP_003180122.1 CDS Apar_1103 NC_013203.1 1246233 1246745 R PFAM: ribonuclease H; KEGG: pat:Patl_2365 ribonuclease H; ribonuclease H complement(1246233..1246745) Atopobium parvulum DSM 20469 8413976 YP_003180123.1 CDS Apar_1104 NC_013203.1 1246780 1249518 R KEGG: bsu:BSU29090 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(1246780..1249518) Atopobium parvulum DSM 20469 8413977 YP_003180124.1 CDS Apar_1105 NC_013203.1 1249766 1251859 D PFAM: glutamine synthetase catalytic region; KEGG: ppd:Ppro_1682 glutamine synthetase, catalytic region; glutamine synthetase 1249766..1251859 Atopobium parvulum DSM 20469 8413978 YP_003180125.1 CDS Apar_1106 NC_013203.1 1251982 1253268 R KEGG: bcr:BCAH187_A5430 putative lipoprotein; hypothetical protein complement(1251982..1253268) Atopobium parvulum DSM 20469 8413979 YP_003180126.1 CDS Apar_1107 NC_013203.1 1253313 1253891 R PFAM: protein of unknown function DUF204; KEGG: cha:CHAB381_1654 membrane protein; hypothetical protein complement(1253313..1253891) Atopobium parvulum DSM 20469 8413980 YP_003180127.1 CDS Apar_1108 NC_013203.1 1253997 1254962 D hypothetical protein 1253997..1254962 Atopobium parvulum DSM 20469 8413981 YP_003180128.1 CDS Apar_1109 NC_013203.1 1255087 1255455 R PFAM: arsenate reductase and related; KEGG: mxa:MXAN_5496 ArsC family protein; arsenate reductase-like protein complement(1255087..1255455) Atopobium parvulum DSM 20469 8413982 YP_003180129.1 CDS Apar_1110 NC_013203.1 1255476 1255658 R hypothetical protein complement(1255476..1255658) Atopobium parvulum DSM 20469 8413983 YP_003180130.1 CDS Apar_1111 NC_013203.1 1255728 1257845 R KEGG: aeh:Mlg_0681 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase complement(1255728..1257845) Atopobium parvulum DSM 20469 8413984 YP_003180131.1 CDS Apar_1112 NC_013203.1 1257901 1260945 R PFAM: glycosyl transferase family 8; glycosyl transferase family 2; KEGG: ecm:EcSMS35_2266 glycosyl transferase family 8; glycosyl transferase family protein complement(1257901..1260945) Atopobium parvulum DSM 20469 8413985 YP_003180132.1 CDS Apar_1113 NC_013203.1 1261027 1264359 R PFAM: protein of unknown function DUF214; KEGG: hha:Hhal_1917 protein of unknown function DUF214; hypothetical protein complement(1261027..1264359) Atopobium parvulum DSM 20469 8413986 YP_003180133.1 CDS Apar_1114 NC_013203.1 1264362 1265063 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1576 ABC transporter related; ABC transporter-like protein complement(1264362..1265063) Atopobium parvulum DSM 20469 8413987 YP_003180134.1 CDS Apar_1115 NC_013203.1 1265118 1265750 R KEGG: afr:AFE_2072 hypothetical protein; hypothetical protein complement(1265118..1265750) Atopobium parvulum DSM 20469 8413988 YP_003180135.1 CDS Apar_1116 NC_013203.1 1265800 1266021 R hypothetical protein complement(1265800..1266021) Atopobium parvulum DSM 20469 8413989 YP_003180136.1 CDS Apar_1117 NC_013203.1 1266011 1267354 R PFAM: UMUC domain protein DNA-repair protein; KEGG: UV damage repair protein, ImpB/MucB/SamB family; UMUC domain-containing protein DNA-repair protein complement(1266011..1267354) Atopobium parvulum DSM 20469 8413990 YP_003180137.1 CDS Apar_1118 NC_013203.1 1267358 1267930 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: hypothetical protein; DJ-1 family protein complement(1267358..1267930) Atopobium parvulum DSM 20469 8413991 YP_003180138.1 CDS Apar_1119 NC_013203.1 1268083 1268541 R TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ecl:EcolC_2925 PTS system, fructose subfamily, IIC subunit; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(1268083..1268541) Atopobium parvulum DSM 20469 8413992 YP_003180139.1 CDS Apar_1120 NC_013203.1 1268634 1269827 R PFAM: iron-containing alcohol dehydrogenase; KEGG: apa:APP7_1949 probable NADH-dependent butanol dehydrogenase 1; iron-containing alcohol dehydrogenase complement(1268634..1269827) Atopobium parvulum DSM 20469 8413993 YP_003180140.1 CDS Apar_1121 NC_013203.1 1269863 1270747 R TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: bsu:BSU11110 hypothetical protein; degV family protein complement(1269863..1270747) Atopobium parvulum DSM 20469 8413994 YP_003180141.1 CDS Apar_1122 NC_013203.1 1270913 1271854 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ppu:PP_2231 hypothetical protein; hypothetical protein 1270913..1271854 Atopobium parvulum DSM 20469 8413995 YP_003180142.1 CDS Apar_1123 NC_013203.1 1271926 1272468 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: son:SO_2833 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(1271926..1272468) Atopobium parvulum DSM 20469 8413996 YP_003180143.1 CDS Apar_1124 NC_013203.1 1272582 1274804 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1272582..1274804) Atopobium parvulum DSM 20469 8413997 YP_003180144.1 CDS Apar_1125 NC_013203.1 1275228 1276217 R PFAM: glycosyl transferase family 2; KEGG: bpy:Bphyt_0850 glycosyl transferase family 2; glycosyl transferase family protein complement(1275228..1276217) Atopobium parvulum DSM 20469 8413998 YP_003180145.1 CDS Apar_1126 NC_013203.1 1276292 1277464 D PFAM: glycosyl transferase family 2; KEGG: bcj:BCAL3239 glucosyltransferase; glycosyl transferase family protein 1276292..1277464 Atopobium parvulum DSM 20469 8413999 YP_003180146.1 CDS Apar_1127 NC_013203.1 1277524 1278567 R PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1729 glycosyl transferase family protein; glycosyl transferase family protein complement(1277524..1278567) Atopobium parvulum DSM 20469 8414000 YP_003180147.1 CDS Apar_1128 NC_013203.1 1278739 1279479 R hypothetical protein complement(1278739..1279479) Atopobium parvulum DSM 20469 8414001 YP_003180148.1 CDS Apar_1129 NC_013203.1 1279675 1280559 R KEGG: tcx:Tcr_0801 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(1279675..1280559) Atopobium parvulum DSM 20469 8414002 YP_003180149.1 CDS Apar_1130 NC_013203.1 1280651 1281427 R PFAM: cobalt transport protein; KEGG: bsu:BSU01470 hypothetical protein; cobalt transport protein complement(1280651..1281427) Atopobium parvulum DSM 20469 8414003 YP_003180150.1 CDS Apar_1131 NC_013203.1 1281420 1283132 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4065 ABC transporter related; ABC transporter-like protein complement(1281420..1283132) Atopobium parvulum DSM 20469 8414004 YP_003180151.1 CDS Apar_1132 NC_013203.1 1283207 1283692 R TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: dal:Dalk_1888 ribosomal protein L17; 50S ribosomal protein L17 complement(1283207..1283692) Atopobium parvulum DSM 20469 8414005 YP_003180152.1 CDS Apar_1133 NC_013203.1 1283726 1284667 R KEGG: bar:GBAA0137 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha complement(1283726..1284667) Atopobium parvulum DSM 20469 8414006 YP_003180153.1 CDS Apar_1134 NC_013203.1 1284692 1285285 R KEGG: gbm:Gbem_0959 ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(1284692..1285285) Atopobium parvulum DSM 20469 8414007 YP_003180154.1 CDS Apar_1135 NC_013203.1 1285303 1285704 R PFAM: ribosomal protein S11; KEGG: bha:BH0161 30S ribosomal protein S11; 30S ribosomal protein S11 complement(1285303..1285704) Atopobium parvulum DSM 20469 8414008 YP_003180155.1 CDS Apar_1136 NC_013203.1 1285719 1286087 R PFAM: ribosomal protein S13; KEGG: ribosomal protein S13 ; K02952 small subunit ribosomal protein S13; 30S ribosomal protein S13 complement(1285719..1286087) Atopobium parvulum DSM 20469 8414009 YP_003180156.1 CDS Apar_1137 NC_013203.1 1286103 1286216 R TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpmJ; 50S ribosomal protein L36; 50S ribosomal protein L36 complement(1286103..1286216) Atopobium parvulum DSM 20469 8414010 YP_003180157.1 CDS Apar_1138 NC_013203.1 1286362 1286580 R KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 complement(1286362..1286580) Atopobium parvulum DSM 20469 8414011 YP_003180158.1 CDS Apar_1139 NC_013203.1 1286694 1287482 R TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: bha:BH0156 methionine aminopeptidase; methionine aminopeptidase complement(1286694..1287482) Atopobium parvulum DSM 20469 8414012 YP_003180159.1 CDS Apar_1140 NC_013203.1 1287479 1288105 R TIGRFAM: adenylate kinase; PFAM: adenylate kinase; KEGG: bcu:BCAH820_0144 adenylate kinase; adenylate kinase complement(1287479..1288105) Atopobium parvulum DSM 20469 8414013 YP_003180160.1 CDS Apar_1141 NC_013203.1 1288173 1289453 R TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sfu:Sfum_1575 preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(1288173..1289453) Atopobium parvulum DSM 20469 8414014 YP_003180161.1 CDS Apar_1142 NC_013203.1 1289453 1289899 R TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: bsu:BSU01350 50S ribosomal protein L15; 50S ribosomal protein L15 complement(1289453..1289899) Atopobium parvulum DSM 20469 8414015 YP_003180162.1 CDS Apar_1143 NC_013203.1 1289911 1290096 R TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: bar:GBAA0128 50S ribosomal protein L30; 50S ribosomal protein L30 complement(1289911..1290096) Atopobium parvulum DSM 20469 8414016 YP_003180163.1 CDS Apar_1144 NC_013203.1 1290099 1290620 R TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: glo:Glov_1363 ribosomal protein S5; 30S ribosomal protein S5 complement(1290099..1290620) Atopobium parvulum DSM 20469 8414017 YP_003180164.1 CDS Apar_1145 NC_013203.1 1290630 1290998 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: bcy:Bcer98_0120 50S ribosomal protein L18; 50S ribosomal protein L18 complement(1290630..1290998) Atopobium parvulum DSM 20469 8414018 YP_003180165.1 CDS Apar_1146 NC_013203.1 1291067 1291603 R PFAM: ribosomal protein L6; KEGG: bha:BH0149 50S ribosomal protein L6; 50S ribosomal protein L6 complement(1291067..1291603) Atopobium parvulum DSM 20469 8414019 YP_003180166.1 CDS Apar_1147 NC_013203.1 1291631 1292029 R PFAM: ribosomal protein S8; KEGG: bha:BH0148 30S ribosomal protein S8; 30S ribosomal protein S8 complement(1291631..1292029) Atopobium parvulum DSM 20469 8414020 YP_003180167.1 CDS Apar_1148 NC_013203.1 1292119 1292304 R PFAM: ribosomal protein S14; KEGG: bcu:BCAH820_0135 ribosomal protein S14; 30S ribosomal protein S14 complement(1292119..1292304) Atopobium parvulum DSM 20469 8414021 YP_003180168.1 CDS Apar_1149 NC_013203.1 1292429 1292989 R PFAM: ribosomal protein L5; KEGG: hso:HS_0072 50S ribosomal protein L5; 50S ribosomal protein L5 complement(1292429..1292989) Atopobium parvulum DSM 20469 8414022 YP_003180169.1 CDS Apar_1150 NC_013203.1 1293294 1293611 R KEGG: bar:GBAA0121 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; 50S ribosomal protein L24 complement(1293294..1293611) Atopobium parvulum DSM 20469 8414023 YP_003180170.1 CDS Apar_1151 NC_013203.1 1293623 1293991 R TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: sat:SYN_03257 50S ribosomal protein L14P; 50S ribosomal protein L14 complement(1293623..1293991) Atopobium parvulum DSM 20469 8414024 YP_003180171.1 CDS Apar_1152 NC_013203.1 1294102 1294368 R PFAM: ribosomal protein S17; KEGG: mmw:Mmwyl1_4267 ribosomal protein S17; 30S ribosomal protein S17 complement(1294102..1294368) Atopobium parvulum DSM 20469 8414025 YP_003180172.1 CDS Apar_1153 NC_013203.1 1294386 1294601 R TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: bsu:BSU01240 50S ribosomal protein L29; 50S ribosomal protein L29 complement(1294386..1294601) Atopobium parvulum DSM 20469 8414026 YP_003180173.1 CDS Apar_1154 NC_013203.1 1294601 1295026 R TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: bsu:BSU01230 50S ribosomal protein L16; 50S ribosomal protein L16 complement(1294601..1295026) Atopobium parvulum DSM 20469 8414027 YP_003180174.1 CDS Apar_1155 NC_013203.1 1295026 1295736 R KEGG: sfu:Sfum_1561 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 complement(1295026..1295736) Atopobium parvulum DSM 20469 8414028 YP_003180175.1 CDS Apar_1156 NC_013203.1 1295739 1296101 R TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: bsu:BSU01210 50S ribosomal protein L22; 50S ribosomal protein L22 complement(1295739..1296101) Atopobium parvulum DSM 20469 8414029 YP_003180176.1 CDS Apar_1157 NC_013203.1 1296116 1296376 R TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bcy:Bcer98_0108 30S ribosomal protein S19; 30S ribosomal protein S19 complement(1296116..1296376) Atopobium parvulum DSM 20469 8414030 YP_003180177.1 CDS Apar_1158 NC_013203.1 1296398 1297234 R TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: dvu:DVU1306 50S ribosomal protein L2; 50S ribosomal protein L2 complement(1296398..1297234) Atopobium parvulum DSM 20469 8414031 YP_003180178.1 CDS Apar_1159 NC_013203.1 1297373 1297672 R PFAM: Ribosomal protein L25/L23; KEGG: pzu:PHZ_c1232 ribosomal protein L23; 50S ribosomal protein L25 complement(1297373..1297672) Atopobium parvulum DSM 20469 8414032 YP_003180179.1 CDS Apar_1160 NC_013203.1 1297672 1298298 R PFAM: ribosomal protein L4/L1e; KEGG: bha:BH0135 50S ribosomal protein L4; 50S ribosomal protein L4 complement(1297672..1298298) Atopobium parvulum DSM 20469 8414033 YP_003180180.1 CDS Apar_1161 NC_013203.1 1298338 1298958 R PFAM: ribosomal protein L3; KEGG: vfm:VFMJ11_0225 50S ribosomal protein L3; 50S ribosomal protein L3 complement(1298338..1298958) Atopobium parvulum DSM 20469 8414034 YP_003180181.1 CDS Apar_1162 NC_013203.1 1299266 1299766 R PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: bha:BH2238 protein-tyrosine-phosphatase; protein tyrosine phosphatase complement(1299266..1299766) Atopobium parvulum DSM 20469 8414035 YP_003180182.1 CDS Apar_1163 NC_013203.1 1299954 1300262 R TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: bha:BH0133 30S ribosomal protein S10; 30S ribosomal protein S10 complement(1299954..1300262) Atopobium parvulum DSM 20469 8414036 YP_003180183.1 CDS Apar_1164 NC_013203.1 1300306 1302402 R TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: gsu:GSU2860 elongation factor G; translation elongation factor G complement(1300306..1302402) Atopobium parvulum DSM 20469 8414037 YP_003180184.1 CDS Apar_1165 NC_013203.1 1302427 1302897 R TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: bcu:BCAH820_0118 ribosomal protein S7; 30S ribosomal protein S7 complement(1302427..1302897) Atopobium parvulum DSM 20469 8414038 YP_003180185.1 CDS Apar_1166 NC_013203.1 1302936 1303364 R TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dvm:DvMF_0075 ribosomal protein S12; 30S ribosomal protein S12 complement(1302936..1303364) Atopobium parvulum DSM 20469 8414039 YP_003180186.1 CDS Apar_1167 NC_013203.1 1303681 1304556 R PFAM: GCN5-related N-acetyltransferase; KEGG: spc:Sputcn32_1375 GCN5-related N- acetyltransferase; N-acetyltransferase GCN5 complement(1303681..1304556) Atopobium parvulum DSM 20469 8414040 YP_003180187.1 CDS Apar_1168 NC_013203.1 1304619 1304987 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: abu:Abu_1860 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(1304619..1304987) Atopobium parvulum DSM 20469 8414041 YP_003180188.1 CDS Apar_1169 NC_013203.1 1305186 1309613 R KEGG: bcb:BCB4264_A0124 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase alpha subunit domain protein; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' complement(1305186..1309613) Atopobium parvulum DSM 20469 8414042 YP_003180189.1 CDS Apar_1170 NC_013203.1 1309619 1313134 R TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; KEGG: DNA-directed RNA polymerase beta chain; DNA-directed RNA polymerase subunit beta complement(1309619..1313134) Atopobium parvulum DSM 20469 8414043 YP_003180190.1 CDS Apar_1171 NC_013203.1 1313500 1313880 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: dds:Ddes_1635 ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(1313500..1313880) Atopobium parvulum DSM 20469 8414044 YP_003180191.1 CDS Apar_1172 NC_013203.1 1314013 1314534 R PFAM: ribosomal protein L10; KEGG: bcu:BCAH820_0110 ribosomal protein L10; 50S ribosomal protein L10 complement(1314013..1314534) Atopobium parvulum DSM 20469 8414045 YP_003180192.1 CDS Apar_1173 NC_013203.1 1314971 1315678 R TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: bha:BH0120 50S ribosomal protein L1; 50S ribosomal protein L1 complement(1314971..1315678) Atopobium parvulum DSM 20469 8414046 YP_003180193.1 CDS Apar_1174 NC_013203.1 1315835 1316263 R KEGG: bsu:BSU01020 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 complement(1315835..1316263) Atopobium parvulum DSM 20469 8414047 YP_003180194.1 CDS Apar_1175 NC_013203.1 1316360 1316905 R KEGG: bsu:BSU01010 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein; NusG antitermination factor complement(1316360..1316905) Atopobium parvulum DSM 20469 8414048 YP_003180195.1 CDS Apar_1176 NC_013203.1 1316909 1317271 R TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dal:Dalk_1927 preprotein translocase, SecE subunit; preprotein translocase subunit SecE complement(1316909..1317271) Atopobium parvulum DSM 20469 8414049 YP_003180196.1 CDS Apar_1177 NC_013203.1 1317436 1317585 R TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dvl:Dvul_0446 50S ribosomal protein L33; 50S ribosomal protein L33 complement(1317436..1317585) Atopobium parvulum DSM 20469 8414051 YP_003180197.1 CDS Apar_1178 NC_013203.1 1317770 1318975 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: bcc:BCc_343 elongation factor Tu; translation elongation factor Tu complement(1317770..1318975) Atopobium parvulum DSM 20469 8414052 YP_003180198.1 CDS Apar_1179 NC_013203.1 1320020 1320598 R PFAM: protein of unknown function DUF901; KEGG: sat:SYN_01764 putative cytoplasmic protein; hypothetical protein complement(1320020..1320598) Atopobium parvulum DSM 20469 8414057 YP_003180199.1 CDS Apar_1180 NC_013203.1 1320602 1321618 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mxa:MXAN_3063 RNA methyltransferase, TrmH family, group 3; TrmH family RNA methyltransferase complement(1320602..1321618) Atopobium parvulum DSM 20469 8414058 YP_003180200.1 CDS Apar_1181 NC_013203.1 1321621 1323102 R TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); KEGG: sgl:SG0705 cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase complement(1321621..1323102) Atopobium parvulum DSM 20469 8414059 YP_003180201.1 CDS Apar_1182 NC_013203.1 1323346 1324986 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: abu:Abu_0469 ABC transporter, ATP-binding protein; ABC transporter-like protein 1323346..1324986 Atopobium parvulum DSM 20469 8414060 YP_003180202.1 CDS Apar_1183 NC_013203.1 1324991 1325476 R KEGG: gbm:Gbem_3798 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1324991..1325476) Atopobium parvulum DSM 20469 8414061 YP_003180203.1 CDS Apar_1184 NC_013203.1 1325479 1326252 R KEGG: dal:Dalk_4391 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1325479..1326252) Atopobium parvulum DSM 20469 8414062 YP_003180204.1 CDS Apar_1185 NC_013203.1 1326282 1327361 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(1326282..1327361) Atopobium parvulum DSM 20469 8414063 YP_003180205.1 CDS Apar_1186 NC_013203.1 1327595 1330225 R PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; UvrB/UvrC protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: bha:BH0103 class III stress response-related ATPase; ATPase AAA-2 domain-containing protein complement(1327595..1330225) Atopobium parvulum DSM 20469 8414064 YP_003180206.1 CDS Apar_1187 NC_013203.1 1330477 1332078 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: pca:Pcar_1248 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(1330477..1332078) Atopobium parvulum DSM 20469 8414065 YP_003180207.1 CDS Apar_1188 NC_013203.1 1332145 1332624 R TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: bha:BH1276 transcriptional elongation factor; transcription elongation factor GreA complement(1332145..1332624) Atopobium parvulum DSM 20469 8414066 YP_003180208.1 CDS Apar_1189 NC_013203.1 1332675 1332887 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: thylakoid assembly protein, putative ; K03116 sec-independent protein translocase protein TatA; twin-arginine translocation protein, TatA/E family subunit complement(1332675..1332887) Atopobium parvulum DSM 20469 8414067 YP_003180209.1 CDS Apar_1190 NC_013203.1 1332984 1333814 D KEGG: dvm:DvMF_1238 spermine synthase; spermidine synthase 1332984..1333814 Atopobium parvulum DSM 20469 8414068 YP_003180210.1 CDS Apar_1191 NC_013203.1 1333903 1335537 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1333903..1335537 Atopobium parvulum DSM 20469 8414069 YP_003180211.1 CDS Apar_1192 NC_013203.1 1335586 1336572 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: esa:ESA_03308 ribonucleoside hydrolase RihC; inosine/uridine-preferring nucleoside hydrolase complement(1335586..1336572) Atopobium parvulum DSM 20469 8414070 YP_003180212.1 CDS Apar_1193 NC_013203.1 1336647 1337567 R PFAM: PfkB domain protein; KEGG: pst:PSPTO_2371 ribokinase; PfkB domain-containing protein complement(1336647..1337567) Atopobium parvulum DSM 20469 8414071 YP_003180213.1 CDS Apar_1194 NC_013203.1 1338122 1341037 D TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: bcb:BCB4264_A4254 magnesium-translocating P- type ATPase; magnesium-translocating P-type ATPase 1338122..1341037 Atopobium parvulum DSM 20469 8414072 YP_003180214.1 CDS Apar_1195 NC_013203.1 1341060 1341830 D PFAM: nitroreductase; nitroreductase 1341060..1341830 Atopobium parvulum DSM 20469 8414073 YP_003180215.1 CDS Apar_1196 NC_013203.1 1341922 1342629 D PFAM: nitroreductase; KEGG: bsu:BSU07830 hypothetical protein; nitroreductase 1341922..1342629 Atopobium parvulum DSM 20469 8414074 YP_003180216.1 CDS Apar_1197 NC_013203.1 1342729 1343784 R PFAM: protein of unknown function DUF871; KEGG: bcb:BCB4264_A0878 hypothetical protein; hypothetical protein complement(1342729..1343784) Atopobium parvulum DSM 20469 8414075 YP_003180217.1 CDS Apar_1198 NC_013203.1 1343908 1345395 R PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: bcb:BCB4264_A0877 PTS system, sucrose- specific IIBC component; PTS system transporter subunit IIC complement(1343908..1345395) Atopobium parvulum DSM 20469 8414076 YP_003180218.1 CDS Apar_1199 NC_013203.1 1345637 1346530 R TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: esa:ESA_00699 N-acetylmuramic acid-6- phosphate etherase; RpiR family transcriptional regulator complement(1345637..1346530) Atopobium parvulum DSM 20469 8414077 YP_003180219.1 CDS Apar_1200 NC_013203.1 1346556 1347470 R PFAM: sugar isomerase (SIS); helix-turn-helix protein RpiR; KEGG: msu:MS0198 DNA-binding transcriptional repressor RpiR; RpiR family transcriptional regulator complement(1346556..1347470) Atopobium parvulum DSM 20469 8414078 YP_003180220.1 CDS Apar_1201 NC_013203.1 1347949 1349946 D PFAM: beta-lactamase; KEGG: sea:SeAg_B2622 beta-lactamase; beta-lactamase 1347949..1349946 Atopobium parvulum DSM 20469 8414079 YP_003180221.1 CDS Apar_1202 NC_013203.1 1350286 1350834 R PFAM: NADPH-dependent FMN reductase; KEGG: dar:Daro_2073 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(1350286..1350834) Atopobium parvulum DSM 20469 8414080 YP_003180222.1 CDS Apar_1203 NC_013203.1 1350962 1351492 R PFAM: GAF domain protein; KEGG: pha:PSHAa1681 hypothetical protein; putative GAF sensor protein complement(1350962..1351492) Atopobium parvulum DSM 20469 8414081 YP_003180223.1 CDS Apar_1204 NC_013203.1 1351495 1351863 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dsh:Dshi_2070 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1351495..1351863) Atopobium parvulum DSM 20469 8414082 YP_003180224.1 CDS Apar_1205 NC_013203.1 1351941 1353734 R TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bsu:BSU11540 hypothetical protein; oligoendopeptidase F complement(1351941..1353734) Atopobium parvulum DSM 20469 8414083 YP_003180225.1 CDS Apar_1206 NC_013203.1 1353935 1354312 R hypothetical protein complement(1353935..1354312) Atopobium parvulum DSM 20469 8414084 YP_003180226.1 CDS Apar_1207 NC_013203.1 1354548 1354859 D hypothetical protein 1354548..1354859 Atopobium parvulum DSM 20469 8414085 YP_003180227.1 CDS Apar_1208 NC_013203.1 1354959 1355882 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shw:Sputw3181_1637 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(1354959..1355882) Atopobium parvulum DSM 20469 8414086 YP_003180228.1 CDS Apar_1209 NC_013203.1 1356288 1356641 D KEGG: sfu:Sfum_3046 protein of unknown function UPF0102; hypothetical protein 1356288..1356641 Atopobium parvulum DSM 20469 8414087 YP_003180229.1 CDS Apar_1210 NC_013203.1 1356826 1357656 R hypothetical protein complement(1356826..1357656) Atopobium parvulum DSM 20469 8414088 YP_003180230.1 CDS Apar_1211 NC_013203.1 1357646 1358107 R KEGG: vvy:VV1934 hypothetical protein; hypothetical protein complement(1357646..1358107) Atopobium parvulum DSM 20469 8414089 YP_003180231.1 CDS Apar_1212 NC_013203.1 1358097 1358525 R KEGG: mpo:Mpop_3052 hypothetical protein; hypothetical protein complement(1358097..1358525) Atopobium parvulum DSM 20469 8414090 YP_003180232.1 CDS Apar_1213 NC_013203.1 1358518 1359573 R McrC protein together with McrB forms the McrBC restriction system; recognizes N4- and C5-methylcytosine (and 5-hydroxy-methylcytosines); appears to act against 5-methylcytosine preceded by a purine residue; MrcC modulates the specificty of McrB and has DNA cleavage activity; 5-methylcytosine-specific restriction enzyme subunit McrC complement(1358518..1359573) Atopobium parvulum DSM 20469 8414091 YP_003180233.1 CDS Apar_1214 NC_013203.1 1359570 1361768 R Contains selenocysteine; PFAM: ATPase associated with various cellular activities AAA_5; KEGG: efe:EFER_3083 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB; ATPase complement(1359570..1361768) Atopobium parvulum DSM 20469 8414092 YP_003180234.1 CDS Apar_1215 NC_013203.1 1361780 1363027 R KEGG: dal:Dalk_1289 hypothetical protein; hypothetical protein complement(1361780..1363027) Atopobium parvulum DSM 20469 8414093 YP_003180235.1 CDS Apar_1217 NC_013203.1 1363401 1363574 R hypothetical protein complement(1363401..1363574) Atopobium parvulum DSM 20469 8414095 YP_003180236.1 CDS Apar_1218 NC_013203.1 1363950 1365503 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: bce:BC3914 UDP-N-acetylmuramoylalanyl-D- glutamate--2,6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 1363950..1365503 Atopobium parvulum DSM 20469 8414097 YP_003180237.1 CDS Apar_1219 NC_013203.1 1365893 1368364 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: bms:BRA0385 putative phosphoketolase; putative phosphoketolase complement(1365893..1368364) Atopobium parvulum DSM 20469 8414098 YP_003180238.1 CDS Apar_1220 NC_013203.1 1368700 1369830 R PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bpy:Bphyt_2260 transcriptional regulator, LacI family; LacI family transcriptional regulator complement(1368700..1369830) Atopobium parvulum DSM 20469 8414099 YP_003180239.1 CDS Apar_1221 NC_013203.1 1369959 1371323 D PFAM: protein of unknown function DUF711; KEGG: ppd:Ppro_0613 hypothetical protein; hypothetical protein 1369959..1371323 Atopobium parvulum DSM 20469 8414100 YP_003180240.1 CDS Apar_1222 NC_013203.1 1371425 1371604 R hypothetical protein complement(1371425..1371604) Atopobium parvulum DSM 20469 8414101 YP_003180241.1 CDS Apar_1223 NC_013203.1 1371999 1372592 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bha:BH1443 transcriptional regulator; XRE family plasmid maintenance system antidote protein 1371999..1372592 Atopobium parvulum DSM 20469 8414102 YP_003180242.1 CDS Apar_1224 NC_013203.1 1372648 1375038 D PFAM: N-6 DNA methylase; protein of unknown function DUF450; KEGG: abu:Abu_1717 type I restriction-modification system, M subunit, putative; N-6 DNA methylase 1372648..1375038 Atopobium parvulum DSM 20469 8414103 YP_003180243.1 CDS Apar_1225 NC_013203.1 1375039 1376418 D KEGG: dol:Dole_2093 restriction modification system DNA specificity subunit; hypothetical protein 1375039..1376418 Atopobium parvulum DSM 20469 8414104 YP_003180244.1 CDS Apar_1227 NC_013203.1 1377014 1378039 R PFAM: cobalamin synthesis protein P47K; KEGG: acr:Acry_1304 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(1377014..1378039) Atopobium parvulum DSM 20469 8414106 YP_003180245.1 CDS Apar_1228 NC_013203.1 1378152 1379210 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hypothetical protein; Alcohol dehydrogenase zinc-binding domain-containing protein complement(1378152..1379210) Atopobium parvulum DSM 20469 8414107 YP_003180246.1 CDS Apar_1229 NC_013203.1 1379629 1380765 D PFAM: protein of unknown function DUF218; KEGG: bce:BC4795 hypothetical protein; hypothetical protein 1379629..1380765 Atopobium parvulum DSM 20469 8414108 YP_003180247.1 CDS Apar_1230 NC_013203.1 1380812 1383085 D PFAM: sodium/hydrogen exchanger; KEGG: bsu:BSU33420 hypothetical protein; sodium/hydrogen exchanger 1380812..1383085 Atopobium parvulum DSM 20469 8414109 YP_003180248.1 CDS Apar_1231 NC_013203.1 1383216 1383938 D KEGG: ccv:CCV52592_1537 30S ribosomal protein S12; 30S ribosomal protein S12 1383216..1383938 Atopobium parvulum DSM 20469 8414110 YP_003180249.1 CDS Apar_1232 NC_013203.1 1383977 1385338 D PFAM: beta-lactamase domain protein; KEGG: bcr:BCAH187_A2853 putative S-layer protein; beta-lactamase domain-containing protein 1383977..1385338 Atopobium parvulum DSM 20469 8414111 YP_003180250.1 CDS Apar_1233 NC_013203.1 1385338 1385613 D KEGG: ban:BA2804 hypothetical protein; hypothetical protein 1385338..1385613 Atopobium parvulum DSM 20469 8414112 YP_003180251.1 CDS Apar_1234 NC_013203.1 1385749 1387068 R KEGG: hypothetical protein; hypothetical protein complement(1385749..1387068) Atopobium parvulum DSM 20469 8414113 YP_003180252.1 CDS Apar_1235 NC_013203.1 1387367 1388671 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sensory histidine protein kinase; histidine kinase complement(1387367..1388671) Atopobium parvulum DSM 20469 8414114 YP_003180253.1 CDS Apar_1236 NC_013203.1 1388712 1389386 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A0608 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(1388712..1389386) Atopobium parvulum DSM 20469 8414115 YP_003180254.1 CDS Apar_1238 NC_013203.1 1389819 1390160 D hypothetical protein 1389819..1390160 Atopobium parvulum DSM 20469 8414117 YP_003180255.1 CDS Apar_1239 NC_013203.1 1390386 1391093 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: bcr:BCAH187_A3349 DNA-binding protein; XRE family transcriptional regulator complement(1390386..1391093) Atopobium parvulum DSM 20469 8414118 YP_003180256.1 CDS Apar_1240 NC_013203.1 1391342 1391731 D hypothetical protein 1391342..1391731 Atopobium parvulum DSM 20469 8414119 YP_003180257.1 CDS Apar_1241 NC_013203.1 1391783 1392142 R hypothetical protein complement(1391783..1392142) Atopobium parvulum DSM 20469 8414120 YP_003180258.1 CDS Apar_1242 NC_013203.1 1392142 1392720 R PFAM: isochorismatase hydrolase; KEGG: bcz:BCZK2041 pyrazinamidase; isochorismatase hydrolase complement(1392142..1392720) Atopobium parvulum DSM 20469 8414121 YP_003180259.1 CDS Apar_1243 NC_013203.1 1392898 1393452 R PFAM: protein of unknown function UPF0079; KEGG: protein of unknown function UPF0079 ; K06925; hypothetical protein complement(1392898..1393452) Atopobium parvulum DSM 20469 8414122 YP_003180260.1 CDS Apar_1244 NC_013203.1 1393445 1394110 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gur:Gura_2925 phage SPO1 DNA polymerase- related protein; phage SPO1 DNA polymerase-like protein complement(1393445..1394110) Atopobium parvulum DSM 20469 8414123 YP_003180261.1 CDS Apar_1245 NC_013203.1 1394110 1395264 R KEGG: bcy:Bcer98_1563 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(1394110..1395264) Atopobium parvulum DSM 20469 8414124 YP_003180262.1 CDS Apar_1246 NC_013203.1 1395274 1396899 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; KEGG: acp:A2cp1_2453 carbohydrate kinase, YjeF related protein; carbohydrate kinase complement(1395274..1396899) Atopobium parvulum DSM 20469 8414125 YP_003180263.1 CDS Apar_1247 NC_013203.1 1396903 1397433 R TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: holo-acyl-carrier-protein synthase ; K00997 holo-; holo-acyl-carrier-protein synthase complement(1396903..1397433) Atopobium parvulum DSM 20469 8414126 YP_003180264.1 CDS Apar_1248 NC_013203.1 1397458 1398801 R TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: bcy:Bcer98_0150 phosphoglucosamine mutase; phosphoglucosamine mutase complement(1397458..1398801) Atopobium parvulum DSM 20469 8414127 YP_003180265.1 CDS Apar_1249 NC_013203.1 1399028 1399423 R PFAM: ribosomal protein S9; KEGG: bsu:BSU01500 30S ribosomal protein S9; 30S ribosomal protein S9 complement(1399028..1399423) Atopobium parvulum DSM 20469 8414128 YP_003180266.1 CDS Apar_1250 NC_013203.1 1399427 1399867 R TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: bha:BH0168 50S ribosomal protein L13; 50S ribosomal protein L13 complement(1399427..1399867) Atopobium parvulum DSM 20469 8414129 YP_003180267.1 CDS Apar_1251 NC_013203.1 1400239 1401264 D PFAM: putative esterase; KEGG: bma:BMAA1289 putative esterase; putative esterase 1400239..1401264 Atopobium parvulum DSM 20469 8414130 YP_003180268.1 CDS Apar_1252 NC_013203.1 1401364 1402302 D KEGG: mpo:Mpop_1188 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 1401364..1402302 Atopobium parvulum DSM 20469 8414131 YP_003180269.1 CDS Apar_1253 NC_013203.1 1402546 1403460 R PFAM: Patatin; KEGG: asu:Asuc_1370 patatin; patatin complement(1402546..1403460) Atopobium parvulum DSM 20469 8414132 YP_003180270.1 CDS Apar_1254 NC_013203.1 1403776 1404870 D PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: swp:swp_1457 helix-turn-helix motif protein; XRE family transcriptional regulator 1403776..1404870 Atopobium parvulum DSM 20469 8414133 YP_003180271.1 CDS Apar_1255 NC_013203.1 1404973 1406067 R PFAM: protein of unknown function DUF871; KEGG: bcy:Bcer98_0651 hypothetical protein; hypothetical protein complement(1404973..1406067) Atopobium parvulum DSM 20469 8414134 YP_003180272.1 CDS Apar_1256 NC_013203.1 1406158 1407444 R KEGG: bcb:BCB4264_A2418 putative PTS system, cellobiose-specific IIC component; TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system EIIC; PTS system lactose/cellobiose family transporter subunit IIC complement(1406158..1407444) Atopobium parvulum DSM 20469 8414135 YP_003180273.1 CDS Apar_1257 NC_013203.1 1407514 1407828 R PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: vfm:VFMJ11_0618 BglE; PTS system lactose/cellobiose-specific transporter subunit IIB complement(1407514..1407828) Atopobium parvulum DSM 20469 8414136 YP_003180274.1 CDS Apar_1258 NC_013203.1 1408035 1412291 R KEGG: bsu:BSU27030 levanase; TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Glycosyl hydrolase family 32 domain protein; Ig domain protein group 2 domain protein; G5 domain protein; sugar-binding domain protein; SMART: glycoside hydrolase family 32; Ig domain protein group 2 domain protein; LPXTG-motif cell wall anchor domain-containing protein complement(1408035..1412291) Atopobium parvulum DSM 20469 8414137 YP_003180275.1 CDS Apar_1259 NC_013203.1 1412646 1413164 R hypothetical protein complement(1412646..1413164) Atopobium parvulum DSM 20469 8414138 YP_003180276.1 CDS Apar_1260 NC_013203.1 1413237 1413680 R PFAM: LytTr DNA-binding region; KEGG: bcr:BCAH187_A5380 response regulator, LytTR family; response regulator receiver protein complement(1413237..1413680) Atopobium parvulum DSM 20469 8414139 YP_003180277.1 CDS Apar_1261 NC_013203.1 1414174 1415148 R TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bca:BCE_1804 sortase family protein; sortase family protein complement(1414174..1415148) Atopobium parvulum DSM 20469 8414140 YP_003180278.1 CDS Apar_1262 NC_013203.1 1415174 1416601 R TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: Cna B domain protein; KEGG: bce:BC2508 collagen adhesion protein; LPXTG-motif cell wall anchor domain-containing protein complement(1415174..1416601) Atopobium parvulum DSM 20469 8414141 YP_003180279.1 CDS Apar_1263 NC_013203.1 1416740 1419331 R PFAM: Cna B domain protein; von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: ppf:Pput_0188 hypothetical protein; Cna B domain-containing protein complement(1416740..1419331) Atopobium parvulum DSM 20469 8414142 YP_003180280.1 CDS Apar_1264 NC_013203.1 1419596 1421656 R TIGRFAM: conserved repeat domain protein; KEGG: bca:BCE_3690 hypothetical protein; hypothetical protein complement(1419596..1421656) Atopobium parvulum DSM 20469 8414143 YP_003180281.1 CDS Apar_1266 NC_013203.1 1422218 1423906 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH- dependent FMN reductase; KEGG: dal:Dalk_1123 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(1422218..1423906) Atopobium parvulum DSM 20469 8414145 YP_003180282.1 CDS Apar_1267 NC_013203.1 1423887 1424444 R PFAM: transcriptional regulator PadR family protein; KEGG: scl:sce6005 transcriptional regulator; PadR-like family transcriptional regulator complement(1423887..1424444) Atopobium parvulum DSM 20469 8414146 YP_003180283.1 CDS Apar_1268 NC_013203.1 1424688 1425554 R PFAM: beta-lactamase domain protein; KEGG: gsu:GSU2769 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein complement(1424688..1425554) Atopobium parvulum DSM 20469 8414147 YP_003180284.1 CDS Apar_1269 NC_013203.1 1425570 1426361 R PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: bcz:pE33L466_0386 methyltransferase; type 11 methyltransferase complement(1425570..1426361) Atopobium parvulum DSM 20469 8414148 YP_003180285.1 CDS Apar_1270 NC_013203.1 1427122 1427814 R PFAM: protein of unknown function DUF1275; KEGG: bur:Bcep18194_A6355 hypothetical protein; hypothetical protein complement(1427122..1427814) Atopobium parvulum DSM 20469 8414150 YP_003180286.1 CDS Apar_1271 NC_013203.1 1427986 1428123 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: dds:Ddes_2011 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(1427986..1428123) Atopobium parvulum DSM 20469 8414151 YP_003180287.1 CDS Apar_1272 NC_013203.1 1428383 1428868 R TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: ppd:Ppro_1314 SsrA-binding protein; SsrA-binding protein complement(1428383..1428868) Atopobium parvulum DSM 20469 8414152 YP_003180288.1 CDS Apar_1273 NC_013203.1 1428871 1429806 R SMART: Tetratricopeptide domain protein; KEGG: ppd:Ppro_2478 TPR repeat-containing protein; hypothetical protein complement(1428871..1429806) Atopobium parvulum DSM 20469 8414153 YP_003180289.1 CDS Apar_1274 NC_013203.1 1429888 1431900 R KEGG: bha:BH3553 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; VacB and RNase II family 3'-5' exoribonuclease complement(1429888..1431900) Atopobium parvulum DSM 20469 8414154 YP_003180290.1 CDS Apar_1275 NC_013203.1 1432133 1433380 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: swi:Swit_0681 amidohydrolase; amidohydrolase complement(1432133..1433380) Atopobium parvulum DSM 20469 8414155 YP_003180291.1 CDS Apar_1276 NC_013203.1 1433516 1434958 R PFAM: amino acid permease-associated region; KEGG: prw:PsycPRwf_1531 amino acid permease- associated region; amino acid permease-associated protein complement(1433516..1434958) Atopobium parvulum DSM 20469 8414156 YP_003180292.1 CDS Apar_1277 NC_013203.1 1435183 1436031 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bha:BH2117 LysR family transcriptional regulator; LysR family transcriptional regulator complement(1435183..1436031) Atopobium parvulum DSM 20469 8414157 YP_003180293.1 CDS Apar_1278 NC_013203.1 1436229 1437164 R PFAM: protein of unknown function DUF214; KEGG: bha:BH3601 cell-division protein; cell division protein FtsX complement(1436229..1437164) Atopobium parvulum DSM 20469 8414158 YP_003180294.1 CDS Apar_1279 NC_013203.1 1437142 1438170 R KEGG: bsu:BSU35260 cell-division ATP-binding protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(1437142..1438170) Atopobium parvulum DSM 20469 8414159 YP_003180295.1 CDS Apar_1280 NC_013203.1 1438783 1439433 R PFAM: KDPG and KHG aldolase; KEGG: bcz:pE33L466_0341 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase; KDPG and KHG aldolase complement(1438783..1439433) Atopobium parvulum DSM 20469 8414160 YP_003180296.1 CDS Apar_1281 NC_013203.1 1439506 1440402 R PFAM: dihydrodipicolinate synthetase; KEGG: asu:Asuc_1954 dihydrodipicolinate synthase; dihydrodipicolinate synthetase complement(1439506..1440402) Atopobium parvulum DSM 20469 8414161 YP_003180297.1 CDS Apar_1282 NC_013203.1 1440442 1441050 R PFAM: sugar isomerase (SIS); KEGG: apl:APL_0387 arabinose-5-phosphate isomerase; sugar isomerase (SIS) complement(1440442..1441050) Atopobium parvulum DSM 20469 8414162 YP_003180298.1 CDS Apar_1283 NC_013203.1 1441107 1441706 R hypothetical protein complement(1441107..1441706) Atopobium parvulum DSM 20469 8414163 YP_003180299.1 CDS Apar_1284 NC_013203.1 1441805 1443112 R PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: bca:BCE_2981 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA complement(1441805..1443112) Atopobium parvulum DSM 20469 8414164 YP_003180300.1 CDS Apar_1285 NC_013203.1 1443271 1443570 R PFAM: phosphotransferase system lactose/cellobiose- specific IIB subunit; KEGG: pin:Ping_2056 phosphotransferase system, lactose/cellobiose-specific IIB subunit; PTS system lactose/cellobiose-specific transporter subunit IIB complement(1443271..1443570) Atopobium parvulum DSM 20469 8414165 YP_003180301.1 CDS Apar_1286 NC_013203.1 1443570 1444025 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: vvy:VVA1331 phosphotransferase system mannitol/fructose-specific IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(1443570..1444025) Atopobium parvulum DSM 20469 8414166 YP_003180302.1 CDS Apar_1287 NC_013203.1 1444405 1445187 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; regulatory protein ArsR; SMART: regulatory protein DeoR; KEGG: pmr:PMI2141 aga operon transcriptional repressor (DeoR-family transcriptional regulator); DeoR family transcriptional regulator 1444405..1445187 Atopobium parvulum DSM 20469 8414167 YP_003180303.1 CDS Apar_1288 NC_013203.1 1445345 1446226 R PFAM: protein of unknown function DUF161; KEGG: bha:BH1678 hypothetical protein; hypothetical protein complement(1445345..1446226) Atopobium parvulum DSM 20469 8414168 YP_003180304.1 CDS Apar_1289 NC_013203.1 1446228 1447337 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: hypothetical protein ; K02836 peptide chain release factor RF-2; peptide chain release factor 2 complement(1446228..1447337) Atopobium parvulum DSM 20469 8414169 YP_003180305.1 CDS Apar_1290 NC_013203.1 1447340 1450090 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; SEC-C motif domain protein; KEGG: ajs:Ajs_0796 preprotein translocase subunit SecA; preprotein translocase subunit SecA complement(1447340..1450090) Atopobium parvulum DSM 20469 8414170 YP_003180306.1 CDS Apar_1291 NC_013203.1 1450181 1453216 R KEGG: afw:Anae109_3347 transcriptional activator domain-containing protein; SARP family transcriptional regulator complement(1450181..1453216) Atopobium parvulum DSM 20469 8414171 YP_003180307.1 CDS Apar_1292 NC_013203.1 1459146 1460561 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gme:Gmet_0135 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(1459146..1460561) Atopobium parvulum DSM 20469 8414176 YP_003180308.1 CDS Apar_1293 NC_013203.1 1460542 1461435 R PFAM: Nucleotidyl transferase; KEGG: bha:BH3717 UTP-glucose-1-phosphate uridylyltransferase; nucleotidyl transferase complement(1460542..1461435) Atopobium parvulum DSM 20469 8414177 YP_003180309.1 CDS Apar_1294 NC_013203.1 1461556 1461984 R PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor; DtxR family iron (metal) dependent repressor complement(1461556..1461984) Atopobium parvulum DSM 20469 8414178 YP_003180310.1 CDS Apar_1295 NC_013203.1 1462093 1463316 R TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcy:Bcer98_3735 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator complement(1462093..1463316) Atopobium parvulum DSM 20469 8414179 YP_003180311.1 CDS Apar_1296 NC_013203.1 1463320 1464603 R TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: glo:Glov_0818 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; UDP-N-acetylglucosamine1- carboxyvinyltransferase complement(1463320..1464603) Atopobium parvulum DSM 20469 8414180 YP_003180312.1 CDS Apar_1297 NC_013203.1 1464631 1465053 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: amc:MADE_04082 membrane-bound ATP synthase, F1 sector, epsilon-subunit; ATP synthase F1 subunit epsilon complement(1464631..1465053) Atopobium parvulum DSM 20469 8414181 YP_003180313.1 CDS Apar_1298 NC_013203.1 1465062 1466543 R KEGG: bcy:Bcer98_3825 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(1465062..1466543) Atopobium parvulum DSM 20469 8414182 YP_003180314.1 CDS Apar_1299 NC_013203.1 1466543 1467460 R KEGG: bsu:BSU36820 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma complement(1466543..1467460) Atopobium parvulum DSM 20469 8414183 YP_003180315.1 CDS Apar_1300 NC_013203.1 1467467 1469140 R KEGG: bcb:BCB4264_A5429 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha complement(1467467..1469140) Atopobium parvulum DSM 20469 8414184 YP_003180316.1 CDS Apar_1301 NC_013203.1 1469140 1469613 R PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: vha:VIBHAR_06107 ATP synthase F1, delta subunit; H+-transporting two-sector ATPase subunit delta complement(1469140..1469613) Atopobium parvulum DSM 20469 8414185 YP_003180317.1 CDS Apar_1302 NC_013203.1 1469603 1470214 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bcy:Bcer98_3829 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B complement(1469603..1470214) Atopobium parvulum DSM 20469 8414186 YP_003180318.1 CDS Apar_1303 NC_013203.1 1470257 1470451 R PFAM: H+transporting two-sector ATPase C subunit; KEGG: dde:Dde_2701 ATP synthase F0, C subunit; H+transporting two-sector ATPase subunit C complement(1470257..1470451) Atopobium parvulum DSM 20469 8414187 YP_003180319.1 CDS Apar_1304 NC_013203.1 1470588 1471388 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: mxa:MXAN_0402 ATP synthase F0, A subunit; ATP synthase F0 subunit A complement(1470588..1471388) Atopobium parvulum DSM 20469 8414188 YP_003180320.1 CDS Apar_1305 NC_013203.1 1471436 1471591 R hypothetical protein complement(1471436..1471591) Atopobium parvulum DSM 20469 8414189 YP_003180321.1 CDS Apar_1306 NC_013203.1 1471897 1472541 R KEGG: bcb:BCB4264_A5437 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(1471897..1472541) Atopobium parvulum DSM 20469 8414190 YP_003180322.1 CDS Apar_1307 NC_013203.1 1472664 1473128 R KEGG: sus:Acid_7018 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(1472664..1473128) Atopobium parvulum DSM 20469 8414191 YP_003180323.1 CDS Apar_1308 NC_013203.1 1473218 1473868 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: mxa:MXAN_1545 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(1473218..1473868) Atopobium parvulum DSM 20469 8414192 YP_003180324.1 CDS Apar_1309 NC_013203.1 1473925 1474818 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; HemK family modification methylase complement(1473925..1474818) Atopobium parvulum DSM 20469 8414193 YP_003180325.1 CDS Apar_1310 NC_013203.1 1474831 1475898 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sus:Acid_6670 peptide chain release factor 1; peptide chain release factor 1 complement(1474831..1475898) Atopobium parvulum DSM 20469 8414194 YP_003180326.1 CDS Apar_1311 NC_013203.1 1476114 1477802 D KEGG: hypothetical protein; hypothetical protein 1476114..1477802 Atopobium parvulum DSM 20469 8414195 YP_003180327.1 CDS Apar_1312 NC_013203.1 1477875 1478564 R PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_2386 hypothetical protein; hypothetical protein complement(1477875..1478564) Atopobium parvulum DSM 20469 8414196 YP_003180328.1 CDS Apar_1313 NC_013203.1 1478776 1479114 R hypothetical protein complement(1478776..1479114) Atopobium parvulum DSM 20469 8414198 YP_003180329.1 CDS Apar_1314 NC_013203.1 1479207 1480025 R PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: aha:AHA_2339 fructose permease IID component; PTS system mannose/fructose/sorbose family transporter subunit IID complement(1479207..1480025) Atopobium parvulum DSM 20469 8414199 YP_003180330.1 CDS Apar_1315 NC_013203.1 1480028 1480894 R PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: spe:Spro_4279 phosphotransferase system PTS sorbose-specific IIC subunit; PTS sorbose-specific transporter subunit IIC complement(1480028..1480894) Atopobium parvulum DSM 20469 8414200 YP_003180331.1 CDS Apar_1316 NC_013203.1 1480914 1481408 R PFAM: PTS system sorbose subfamily IIB component; KEGG: spe:Spro_4280 PTS system sorbose subfamily IIB component; PTS system sorbose subfamily transporter subunit IIB complement(1480914..1481408) Atopobium parvulum DSM 20469 8414201 YP_003180332.1 CDS Apar_1317 NC_013203.1 1481463 1481894 R PFAM: PTS system fructose subfamily IIA component; KEGG: ent:Ent638_2386 PTS system mannose/fructose/sorbose family IIA subunit; PTS system fructose subfamily transporter subunit IIA complement(1481463..1481894) Atopobium parvulum DSM 20469 8414202 YP_003180333.1 CDS pgi NC_013203.1 1482271 1483977 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1482271..1483977) Atopobium parvulum DSM 20469 8414203 YP_003180334.1 CDS Apar_1319 NC_013203.1 1484074 1484601 R hypothetical protein complement(1484074..1484601) Atopobium parvulum DSM 20469 8414204 YP_003180335.1 CDS Apar_1320 NC_013203.1 1484753 1485070 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dds:Ddes_1199 thioredoxin; thioredoxin 1484753..1485070 Atopobium parvulum DSM 20469 8414205 YP_003180336.1 CDS Apar_1321 NC_013203.1 1485170 1485886 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: net:Neut_0532 phosphoesterase, PA-phosphatase- related protein; PA-phosphatase-like phosphoesterase 1485170..1485886 Atopobium parvulum DSM 20469 8414206 YP_003180337.1 CDS Apar_1322 NC_013203.1 1485846 1486343 R TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pst:PSPTO_2610 phosphoesterase, putative; phosphodiesterase complement(1485846..1486343) Atopobium parvulum DSM 20469 8414207 YP_003180338.1 CDS Apar_1323 NC_013203.1 1486396 1487109 R PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: gme:Gmet_2697 LytR/AlgR family transcriptional regulator; LytTR family two component transcriptional regulator complement(1486396..1487109) Atopobium parvulum DSM 20469 8414208 YP_003180339.1 CDS Apar_1324 NC_013203.1 1487158 1488459 R PFAM: histidine kinase internal region; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dde:Dde_0160 ATP-binding region, ATPase-like; signal transduction histidine kinase LytS complement(1487158..1488459) Atopobium parvulum DSM 20469 8414209 YP_003180340.1 CDS Apar_1325 NC_013203.1 1488505 1489131 R PFAM: protein of unknown function DUF988; KEGG: bcr:BCAH187_A1767 hypothetical protein; hypothetical protein complement(1488505..1489131) Atopobium parvulum DSM 20469 8414210 YP_003180341.1 CDS Apar_1326 NC_013203.1 1489348 1490094 R PFAM: CobB/CobQ domain protein glutamine amidotransferase; CobB/CobQ domain-containing protein glutamine amidotransferase complement(1489348..1490094) Atopobium parvulum DSM 20469 8414211 YP_003180342.1 CDS Apar_1327 NC_013203.1 1490087 1491499 R PFAM: Mur ligase middle domain protein; KEGG: met:M446_1685 UDP-N-acetylmuramoylalanine--D- glutamate ligase; Mur ligase middle domain-containing protein complement(1490087..1491499) Atopobium parvulum DSM 20469 8414212 YP_003180343.1 CDS Apar_1328 NC_013203.1 1491648 1495202 R TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: eca:ECA2957 pyruvate-flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase complement(1491648..1495202) Atopobium parvulum DSM 20469 8414213 YP_003180344.1 CDS Apar_1329 NC_013203.1 1495596 1496258 R hypothetical protein complement(1495596..1496258) Atopobium parvulum DSM 20469 8414214 YP_003180345.1 CDS Apar_1330 NC_013203.1 1496311 1497900 R KEGG: gsu:GSU0609 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1496311..1497900) Atopobium parvulum DSM 20469 8414215 YP_003180346.1 CDS Apar_1331 NC_013203.1 1498041 1498670 D PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family; N-acetyltransferase GCN5 1498041..1498670 Atopobium parvulum DSM 20469 8414216 YP_003180347.1 CDS Apar_1332 NC_013203.1 1498673 1499608 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dds:Ddes_1769 glutamyl-tRNA synthetase class Ic; Glutamate--tRNA ligase 1498673..1499608 Atopobium parvulum DSM 20469 8414217 YP_003180348.1 CDS Apar_1333 NC_013203.1 1499605 1500285 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase; histidine kinase 1499605..1500285 Atopobium parvulum DSM 20469 8414218 YP_003180349.1 CDS Apar_1334 NC_013203.1 1500260 1500979 R KEGG: bcr:BCAH187_A0759 trehalose operon repressor; TIGRFAM: trehalose operon repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator complement(1500260..1500979) Atopobium parvulum DSM 20469 8414219 YP_003180350.1 CDS Apar_1335 NC_013203.1 1501196 1502689 D TIGRFAM: PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS EIIB protein; KEGG: pin:Ping_0522 trehalose(maltose)-specific PTS system components IIBC; PTS system trehalose-specific transporter subunit IIBC 1501196..1502689 Atopobium parvulum DSM 20469 8414220 YP_003180351.1 CDS Apar_1336 NC_013203.1 1502713 1504410 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: stt:t4488 trehalose-6-phosphate hydrolase; alpha amylase 1502713..1504410 Atopobium parvulum DSM 20469 8414221 YP_003180352.1 CDS Apar_1337 NC_013203.1 1505118 1505438 R hypothetical protein complement(1505118..1505438) Atopobium parvulum DSM 20469 8414224 YP_003180353.1 CDS Apar_1338 NC_013203.1 1505583 1506866 R KEGG: dal:Dalk_4396 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(1505583..1506866) Atopobium parvulum DSM 20469 8414225 YP_003180354.1 CDS Apar_1339 NC_013203.1 1506977 1507198 D hypothetical protein 1506977..1507198 Atopobium parvulum DSM 20469 8414226 YP_003180355.1 CDS Apar_1340 NC_013203.1 1507460 1509253 D PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: pol:Bpro_1235 serine/threonine protein kinase; serine/threonine protein kinase 1507460..1509253 Atopobium parvulum DSM 20469 8414228 YP_003180356.1 CDS Apar_1341 NC_013203.1 1509240 1510364 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein; FHA domain-containing protein 1509240..1510364 Atopobium parvulum DSM 20469 8414229 YP_003180357.1 CDS Apar_1342 NC_013203.1 1510364 1510777 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce3771 sigma-54 dependent transcriptional regulator; FHA domain-containing protein 1510364..1510777 Atopobium parvulum DSM 20469 8414230 YP_003180358.1 CDS Apar_1343 NC_013203.1 1510860 1512044 D PFAM: Protein phosphatase 2C-like; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: dps:DP2574 serine/threonine protein phosphatase; protein serine/threonine phosphatase 1510860..1512044 Atopobium parvulum DSM 20469 8414231 YP_003180359.1 CDS Apar_1344 NC_013203.1 1512047 1514911 D PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: dps:DP2425 cell division protein (FtsW); peptidoglycan glycosyltransferase 1512047..1514911 Atopobium parvulum DSM 20469 8414232 YP_003180360.1 CDS Apar_1345 NC_013203.1 1515012 1516937 D PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: bsu:BSU15770 protein kinase; serine/threonine protein kinase with PASTA sensor(s) 1515012..1516937 Atopobium parvulum DSM 20469 8414233 YP_003180361.1 CDS Apar_1346 NC_013203.1 1517703 1518326 R hypothetical protein complement(1517703..1518326) Atopobium parvulum DSM 20469 8414235 YP_003180362.1 CDS Apar_1347 NC_013203.1 1518313 1519209 R KEGG: dds:Ddes_1050 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1518313..1519209) Atopobium parvulum DSM 20469 8414236 YP_003180363.1 CDS Apar_1348 NC_013203.1 1519285 1520790 R KEGG: gbm:Gbem_2673 heavy metal sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; histidine kinase complement(1519285..1520790) Atopobium parvulum DSM 20469 8414237 YP_003180364.1 CDS Apar_1349 NC_013203.1 1520802 1521515 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2145 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(1520802..1521515) Atopobium parvulum DSM 20469 8414238 YP_003180365.1 CDS Apar_1350 NC_013203.1 1521616 1522827 R hypothetical protein complement(1521616..1522827) Atopobium parvulum DSM 20469 8414239 YP_003180366.1 CDS Apar_1351 NC_013203.1 1522831 1524177 R TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: glo:Glov_2695 adenylosuccinate lyase; adenylosuccinate lyase complement(1522831..1524177) Atopobium parvulum DSM 20469 8414240 YP_003180367.1 CDS Apar_1352 NC_013203.1 1524370 1525632 R PFAM: peptidase M29 aminopeptidase II; KEGG: bsu:BSU14450 aminopeptidase; peptidase M29 aminopeptidase II complement(1524370..1525632) Atopobium parvulum DSM 20469 8414242 YP_003180368.1 CDS Apar_1353 NC_013203.1 1526096 1526305 D hypothetical protein 1526096..1526305 Atopobium parvulum DSM 20469 8414244 YP_003180369.1 CDS Apar_1354 NC_013203.1 1526362 1526763 R PFAM: ferric-uptake regulator; KEGG: dvm:DvMF_2366 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(1526362..1526763) Atopobium parvulum DSM 20469 8414245 YP_003180370.1 CDS Apar_1355 NC_013203.1 1526910 1529165 D PFAM: Cna B domain protein; KEGG: bce:BC3526 collagen adhesion protein; Cna B domain-containing protein 1526910..1529165 Atopobium parvulum DSM 20469 8414246 YP_003180371.1 CDS Apar_1356 NC_013203.1 1529252 1531177 R KEGG: ACRC; acidic repeat containing; hypothetical protein complement(1529252..1531177) Atopobium parvulum DSM 20469 8414247 YP_003180372.1 CDS Apar_1357 NC_013203.1 1531367 1532347 D KEGG: mxa:MXAN_1359 hypothetical protein; transcriptional regulator protein-like protein 1531367..1532347 Atopobium parvulum DSM 20469 8414248 YP_003180373.1 CDS Apar_1358 NC_013203.1 1532337 1533326 D hypothetical protein 1532337..1533326 Atopobium parvulum DSM 20469 8414249 YP_003180374.1 CDS Apar_1359 NC_013203.1 1533427 1536363 R KEGG: bha:BH1691 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DNA polymerase III subunit epsilon complement(1533427..1536363) Atopobium parvulum DSM 20469 8414250 YP_003180375.1 CDS Apar_1360 NC_013203.1 1536456 1537415 R KEGG: sfu:Sfum_4102 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP- grasp; RimK domain protein ATP-grasp; phosphoribosylglycinamide synthetase; D-alanine--D-alanine ligase complement(1536456..1537415) Atopobium parvulum DSM 20469 8414251 YP_003180376.1 CDS Apar_1361 NC_013203.1 1537515 1538633 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: bsu:BSU15750 hypothetical protein; radical SAM enzyme, Cfr family 1537515..1538633 Atopobium parvulum DSM 20469 8414252 YP_003180377.1 CDS Apar_1362 NC_013203.1 1538961 1539821 R KEGG: gur:Gura_4257 ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein complement(1538961..1539821) Atopobium parvulum DSM 20469 8414253 YP_003180378.1 CDS Apar_1363 NC_013203.1 1539814 1540614 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bsu:BSU40970 chromosome partitioning protein; transcriptional regulator; Cobyrinic acid ac-diamide synthase complement(1539814..1540614) Atopobium parvulum DSM 20469 8414254 YP_003180379.1 CDS Apar_1364 NC_013203.1 1540679 1541437 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: bcb:BCB4264_A5609 16S rRNA methyltransferase GidB; methyltransferase GidB complement(1540679..1541437) Atopobium parvulum DSM 20469 8414255 YP_003180380.1 CDS Apar_1365 NC_013203.1 1541541 1542125 R PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: dvl:Dvul_1916 single-stranded nucleic acid binding R3H domain-containing protein; single-stranded nucleic acid binding R3H domain-containing protein complement(1541541..1542125) Atopobium parvulum DSM 20469 8414256 YP_003180381.1 CDS Apar_1366 NC_013203.1 1542210 1542968 R PFAM: 60 kDa inner membrane insertion protein; KEGG: cja:CJA_3823 inner membrane protein, 60 kDa; 60 kDa inner membrane insertion protein complement(1542210..1542968) Atopobium parvulum DSM 20469 8414257 YP_003180382.1 CDS Apar_1367 NC_013203.1 1542989 1543225 R PFAM: protein of unknown function DUF37; KEGG: mgm:Mmc1_3758 protein of unknown function DUF37; hypothetical protein complement(1542989..1543225) Atopobium parvulum DSM 20469 8414258 YP_003180383.1 CDS Apar_1368 NC_013203.1 1543222 1543545 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: gdi:GDI2137 ribonuclease P protein component; ribonuclease P protein component complement(1543222..1543545) Atopobium parvulum DSM 20469 8414259 YP_003180384.1 CDS Apar_1369 NC_013203.1 1543557 1543691 R TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: cbg:CbuG_0026 LSU ribosomal protein L34P; 50S ribosomal protein L34 complement(1543557..1543691) Atopobium parvulum DSM 20469 8414260 Apar_R0001 tRNA Apar_R0001 NC_013203.1 11464 11540 D tRNA-Ile 11464..11540 Atopobium parvulum DSM 20469 8412847 Apar_R0002 tRNA Apar_R0002 NC_013203.1 11629 11704 D tRNA-Ala 11629..11704 Atopobium parvulum DSM 20469 8412848 Apar_R0003 tRNA Apar_R0003 NC_013203.1 23703 23793 D tRNA-Ser 23703..23793 Atopobium parvulum DSM 20469 8412858 Apar_R0004 tRNA Apar_R0004 NC_013203.1 23832 23922 D tRNA-Ser 23832..23922 Atopobium parvulum DSM 20469 8412859 Apar_R0005 tRNA Apar_R0005 NC_013203.1 81200 81290 R tRNA-Ser complement(81200..81290) Atopobium parvulum DSM 20469 8412913 Apar_R0006 tRNA Apar_R0006 NC_013203.1 133722 133798 D tRNA-Asp 133722..133798 Atopobium parvulum DSM 20469 8412962 Apar_R0007 tRNA Apar_R0007 NC_013203.1 145864 145948 D tRNA-Leu 145864..145948 Atopobium parvulum DSM 20469 8412973 Apar_R0008 tRNA Apar_R0008 NC_013203.1 148933 149007 R tRNA-Glu complement(148933..149007) Atopobium parvulum DSM 20469 8412976 Apar_R0009 tRNA Apar_R0009 NC_013203.1 189904 189979 D tRNA-Val 189904..189979 Atopobium parvulum DSM 20469 8413010 Apar_R0010 tRNA Apar_R0010 NC_013203.1 195620 195696 D tRNA-Pro 195620..195696 Atopobium parvulum DSM 20469 8413017 Apar_R0011 tRNA Apar_R0011 NC_013203.1 393415 393489 R tRNA-Gln complement(393415..393489) Atopobium parvulum DSM 20469 8413192 Apar_R0012 tRNA Apar_R0012 NC_013203.1 577858 577934 R tRNA-Glu complement(577858..577934) Atopobium parvulum DSM 20469 8413352 Apar_R0013 tRNA Apar_R0013 NC_013203.1 577954 578027 R tRNA-Gln complement(577954..578027) Atopobium parvulum DSM 20469 8413353 Apar_R0014 tRNA Apar_R0014 NC_013203.1 604585 604668 D tRNA-Leu 604585..604668 Atopobium parvulum DSM 20469 8413373 Apar_R0016 tRNA Apar_R0016 NC_013203.1 608309 608384 D tRNA-Ala 608309..608384 Atopobium parvulum DSM 20469 8413379 Apar_R0017 tRNA Apar_R0017 NC_013203.1 665382 665458 R tRNA-Arg complement(665382..665458) Atopobium parvulum DSM 20469 8413452 Apar_R0018 tRNA Apar_R0018 NC_013203.1 667027 667102 D tRNA-His 667027..667102 Atopobium parvulum DSM 20469 8413454 Apar_R0019 tRNA Apar_R0019 NC_013203.1 667118 667193 D tRNA-Lys 667118..667193 Atopobium parvulum DSM 20469 8413455 Apar_R0020 tRNA Apar_R0020 NC_013203.1 681808 681883 R tRNA-Gly complement(681808..681883) Atopobium parvulum DSM 20469 8413467 Apar_R0021 tRNA Apar_R0021 NC_013203.1 681907 681983 R tRNA-Pro complement(681907..681983) Atopobium parvulum DSM 20469 8413468 Apar_R0022 tRNA Apar_R0022 NC_013203.1 689086 689171 D tRNA-Leu 689086..689171 Atopobium parvulum DSM 20469 8413473 Apar_R0023 tRNA Apar_R0023 NC_013203.1 741937 742013 D tRNA-Arg 741937..742013 Atopobium parvulum DSM 20469 8413526 Apar_R0024 tRNA Apar_R0024 NC_013203.1 795375 795450 D tRNA-Ala 795375..795450 Atopobium parvulum DSM 20469 8413577 Apar_R0025 tRNA Apar_R0025 NC_013203.1 795491 795566 D tRNA-Met 795491..795566 Atopobium parvulum DSM 20469 8413578 Apar_R0026 tRNA Apar_R0026 NC_013203.1 796591 796665 D tRNA-Val 796591..796665 Atopobium parvulum DSM 20469 8413581 Apar_R0027 tRNA Apar_R0027 NC_013203.1 820524 820600 R tRNA-Pro complement(820524..820600) Atopobium parvulum DSM 20469 8413603 Apar_R0028 tRNA Apar_R0028 NC_013203.1 909039 909113 R tRNA-Asn complement(909039..909113) Atopobium parvulum DSM 20469 8413689 Apar_R0030 tRNA Apar_R0030 NC_013203.1 1018306 1018381 R tRNA-Val complement(1018306..1018381) Atopobium parvulum DSM 20469 8413776 Apar_R0031 tRNA Apar_R0031 NC_013203.1 1024427 1024502 D tRNA-Gly 1024427..1024502 Atopobium parvulum DSM 20469 8413783 Apar_R0032 tRNA Apar_R0032 NC_013203.1 1024541 1024614 D tRNA-Cys 1024541..1024614 Atopobium parvulum DSM 20469 8413784 Apar_R0033 tRNA Apar_R0033 NC_013203.1 1028102 1028191 R tRNA-Leu complement(1028102..1028191) Atopobium parvulum DSM 20469 8413787 Apar_R0034 tRNA Apar_R0034 NC_013203.1 1104227 1104302 R tRNA-Thr complement(1104227..1104302) Atopobium parvulum DSM 20469 8413848 Apar_R0035 tRNA Apar_R0035 NC_013203.1 1156933 1157008 D tRNA-Phe 1156933..1157008 Atopobium parvulum DSM 20469 8413894 Apar_R0036 tRNA Apar_R0036 NC_013203.1 1317342 1317417 R tRNA-Trp complement(1317342..1317417) Atopobium parvulum DSM 20469 8414050 Apar_R0037 tRNA Apar_R0037 NC_013203.1 1319081 1319157 R tRNA-Met complement(1319081..1319157) Atopobium parvulum DSM 20469 8414053 Apar_R0038 tRNA Apar_R0038 NC_013203.1 1319177 1319252 R tRNA-Thr complement(1319177..1319252) Atopobium parvulum DSM 20469 8414054 Apar_R0039 tRNA Apar_R0039 NC_013203.1 1319254 1319337 R tRNA-Tyr complement(1319254..1319337) Atopobium parvulum DSM 20469 8414055 Apar_R0040 tRNA Apar_R0040 NC_013203.1 1319597 1319672 R tRNA-Thr complement(1319597..1319672) Atopobium parvulum DSM 20469 8414056 Apar_R0041 tRNA Apar_R0041 NC_013203.1 1363657 1363733 R tRNA-Met complement(1363657..1363733) Atopobium parvulum DSM 20469 8414096 Apar_R0048 tRNA Apar_R0048 NC_013203.1 1504801 1504891 D tRNA-Ser 1504801..1504891 Atopobium parvulum DSM 20469 8414222 Apar_R0049 tRNA Apar_R0049 NC_013203.1 1505005 1505081 D tRNA-Arg 1505005..1505081 Atopobium parvulum DSM 20469 8414223 Apar_R0050 tRNA Apar_R0050 NC_013203.1 1507240 1507326 R tRNA-Leu complement(1507240..1507326) Atopobium parvulum DSM 20469 8414227 Apar_R0051 tRNA Apar_R0051 NC_013203.1 1517479 1517554 R tRNA-Arg complement(1517479..1517554) Atopobium parvulum DSM 20469 8414234 Apar_R0052 tRNA Apar_R0052 NC_013203.1 1524246 1524321 R tRNA-Lys complement(1524246..1524321) Atopobium parvulum DSM 20469 8414241 Apar_R0053 tRNA Apar_R0053 NC_013203.1 1525814 1525888 R tRNA-Gly complement(1525814..1525888) Atopobium parvulum DSM 20469 8414243 Apar_R0043 rRNA Apar_R0043 NC_013203.1 1453619 1453733 R 5S ribosomal RNA complement(1453619..1453733) Atopobium parvulum DSM 20469 8414172 Apar_R0044 rRNA Apar_R0044 NC_013203.1 1453620 1453735 R 5S ribosomal RNA complement(1453620..1453735) Atopobium parvulum DSM 20469 8414173 Apar_R0045 rRNA Apar_R0045 NC_013203.1 1453848 1456782 R 23S ribosomal RNA complement(1453848..1456782) Atopobium parvulum DSM 20469 8414174 Apar_R0046 rRNA Apar_R0046 NC_013203.1 1457029 1458528 R 16S ribosomal RNA complement(1457029..1458528) Atopobium parvulum DSM 20469 8414175