; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Atta_cephalotes.Attacep1.0.34/genome/Atta_cephalotes.Attacep1.0.34_stop_codons.wc -o $RSAT/public_html/data/genomes/Atta_cephalotes.Attacep1.0.34/genome/Atta_cephalotes.Attacep1.0.34_stop_codon_frequencies.tab ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Atta_cephalotes.Attacep1.0.34/genome/Atta_cephalotes.Attacep1.0.34_stop_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Atta_cephalotes.Attacep1.0.34/genome/Atta_cephalotes.Attacep1.0.34_stop_codon_frequencies.tab ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 72363 ; Sum of sequence lengths 217089 ; discarded residues 10 (other letters than ACGT) ; discarded occurrences 4 (contain discarded residues) ; nb possible positions 72359 ; total oligo occurrences 72359 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ aag aag 0.1381307093796 9995 cag cag 0.1179811771860 8537 gag gag 0.0618858745975 4478 aaa aaa 0.0485219530397 3511 atg atg 0.0406031039677 2938 tag tag 0.0383780870382 2777 caa caa 0.0372863085449 2698 ttg ttg 0.0289943199878 2098 acg acg 0.0241020467392 1744 aat aat 0.0229411683412 1660 gaa gaa 0.0227891485510 1649 tcg tcg 0.0220566895618 1596 ctg ctg 0.0219737696762 1590 agg agg 0.0163628574193 1184 tgg tgg 0.0162937575146 1179 gat gat 0.0151328791166 1095 gtg gtg 0.0141516604707 1024 aca aca 0.0130737019583 946 aga aga 0.0125623626639 909 ccg ccg 0.0120510233696 872 att att 0.0117469837892 850 taa taa 0.0115811440180 838 tat tat 0.0112909244185 817 aac aac 0.0110836247046 802 cat cat 0.0107243052005 776 gcg gcg 0.0106413853149 770 ata ata 0.0099642062494 721 cgg cgg 0.0097016266118 702 ttt ttt 0.0090382675272 654 cga cga 0.0080294089194 581 tca tca 0.0079050290911 572 tta tta 0.0075457095869 546 agt agt 0.0069376304261 502 act act 0.0069099904642 500 tct tct 0.0067717906549 490 cac cac 0.0066197708647 479 tac tac 0.0065230309982 472 gca gca 0.0064262911317 465 atc atc 0.0063710112080 461 gac gac 0.0062880913224 455 gtt gtt 0.0061637114941 446 ggg ggg 0.0060116917039 435 ctt ctt 0.0059840517420 433 cca cca 0.0059425917992 430 gct gct 0.0058043919899 420 ttc ttc 0.0054588924667 395 tga tga 0.0052101328100 377 cct cct 0.0050995729626 369 gta gta 0.0050857529817 368 tgt tgt 0.0047817134012 346 agc agc 0.0045467737255 329 gga gga 0.0043532939925 315 cta cta 0.0040354344311 292 acc acc 0.0037866747744 274 cgt cgt 0.0036899349079 267 ctc ctc 0.0036761149270 266 tgc tgc 0.0035517350986 257 tcc tcc 0.0034688152130 251 gtc gtc 0.0034549952321 250 ggt ggt 0.0031233156898 226 cgc cgc 0.0025705164527 186 ggc ggc 0.0024461366243 177 gcc gcc 0.0022941168341 166 ccc ccc 0.0020868171202 151 ; Host name n85 ; Job started 2017-04-15.083655 ; Job done 2017-04-15.083657 ; Seconds 1.64 ; user 1.64 ; system 0.05 ; cuser 0 ; csystem 0