-- dump date   	20120504_135139
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
1194526	probable pseudogene
1194705	This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GP:1421736 percent identity: 94.55; identified by sequence similarity; putative;hypothetical protein, paralogous family 141, authentic frameshift
1194706	This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GP:1421737 percent identity: 76.98; identified by sequence similarity; putative;conserved hypothetical protein, authentic frameshift
1194713	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact; similar to GP:2121281 percent identity: 93.98; identified by sequence similarity; putative
1194743	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to EGAD:19910
1194751	This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GP:520778 percent identity: 93.50; identified by sequence similarity; putative;protein p23, authentic frameshift
1194760	This region contains an authentic frame shift and is not the result of a sequencing artifact; similar to GP:1663564 percent identity: 99.22; identified by sequence similarity; putative;hypothetical protein, paralogous family 108, authentic frameshift
1194783	This region contains a pseudogene, one or more premature stops, and is not the result of a sequencing artifact; similar to GB:AE000787 percent identity: 71.71; identified by sequence similarity; putative;conserved hypothetical protein, pseudogene
1194784	This region contains a pseudogene, one or more premature stops, and is not the result of a sequencing artifact; similar to GB:AE000786 percent identity: 97.65; identified by sequence similarity; putative;conserved hypothetical protein, pseudogene
1194786	This region contains a pseudogene, one or more premature stops, and is not the result of a sequencing artifact; similar to GB:AE000789 percent identity: 93.39; identified by sequence similarity; putative;multidrug efflux transporter, pseudogene
1194788	This region contains a pseudogene, one or more premature stops, and is not the result of a sequencing artifact; similar to GB:AE000789 percent identity: 79.82; identified by sequence similarity; putative;conserved hypothetical protein, pseudogene
1194791	This region contains a pseudogene, one or more premature stops, and is not the result of a sequencing artifact; similar to GB:AE000789 percent identity: 75.00; identified by sequence similarity; putative;conserved hypothetical protein, pseudogene
1194839	UTP--glucose-1-phosphate uridylyltransferase subfamily, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAB93994.1; match to protein family HMM PF01704
1194854	ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D); this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
1194856	diphosphate--fructose-6-phosphate 1-phosphotransferase; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00365; match to protein family HMM TIGR02477
11493322	S-adenosylmethionine:tRNA ribosyltransferase-isomerase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:O51053; match to protein family HMM PF02547; match to protein family HMM TIGR00113
1194874	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
1194903	peptidase, putative; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00557; match to protein family HMM PF01321
1194907	membrane protein, putative; this gene contains a frame shift which may be the result of a sequencing error
1194913	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11493323	lipoprotein releasing factor, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAO85481.1
1194927	V-type ATP synthase subunit I (V-type ATPase subunit I); this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01496
1194930	V-type ATP synthase alpha chain (V-type ATPase subunitA); this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF00006; match to protein family HMM PF02874
1195711	phosphatidate cytidylyltransferase; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to EGAD:17459
1194975	acriflavine resistance protein, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to GB:AAU06999.1; match to protein family HMM PF00873
1194984	flagellar hook-associated protein 2 (HAP2) (Filament cap protein)(Flagellar cap protein); this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF02465; match to protein family HMM PF07195
1195008	von Willebrand factor type A domain protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00092
1195016	flagellar hook-associated protein FlgK; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF06429; match to protein family HMM PF07196; match to protein family HMM TIGR02492
1195017	flagellar hook-associated protein 3; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00669; match to protein family HMM PF07196; match to protein family HMM TIGR02550
1195023	ribosomal protein L20; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032
1195031	peptide chain release factor 1; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019
1195034	membrane protein, putative; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195044	UDP-glucose pyrophosphorylase; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF00483
1195045	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195047	LMP1; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF00515; match to protein family HMM PF01846; match to protein family HMM PF07719
1195060	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
1195061	lipoprotein, putative; this gene contains a frame shift which may be the result of a sequencing error
1195089	conserved hypothetical integral membrane protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195094	DNA translocase FtsK; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01580; match to protein family HMM PF09397
1195166	bacterial extracellular solute-binding proteins, family 5; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00496
1195173	P26; this gene contains a frame shift which may be the result of a sequencing error
11493324	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAU07210.1
1195196	carboxyl- protease; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
1195226	DNA-directed RNA polymerase, beta subunit; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013
11493325	DNA/RNA non-specific endonuclease, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:AAU07262.1; match to protein family HMM PF01223
1195277	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
1195287	inner membrane protein OxaA; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02096; match to protein family HMM TIGR03592
1195303	fibronectin type III domain protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00041
11493326	ribosomal RNA large subunit methyltransferase J; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01728; match to protein family HMM TIGR00478
11493327	conserved hypothetical protein, degenerate; this region contains one or more premature stops and/or frameshifts; identified by similarity to GB:ABH01781.1
1195359	phenylalanyl-tRNA synthetase alpha chain (Phenylalanine--tRNA ligase alpha chain) (PheRS); this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF01409; match to protein family HMM TIGR00468
1195361	thioredoxin-disulfide reductase; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
11493328	RNA methyltransferase, TrmH family, group 3, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to GB:ABH01786.1
11493329	putative membrane protein, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to GB:ABH01790.1
11493330	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to GB:ABH01798.1
1195377	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
11493331	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAU07379.1
1195389	tetratricopeptide repeat domain protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195400	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195420	ABC transporter, ATP-binding protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00005
1195436	phosphate acetyltransferase; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01515; match to protein family HMM TIGR00651
1195478	probable M18-family aminopeptidase 2; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02127; match to protein family HMM PF05343
11493332	exodeoxyribonuclease V, gamma chain, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:ABH01908.1
1195500	serine/threonine kinase, putative; this gene contains a premature stop which may be the result of a sequencing error
11493333	DNA primase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAU07559.1; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391
1195574	threonyl-tRNA synthetase; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF07973; match to protein family HMM TIGR00418
1195577	adenylyl cyclase CyaB, putative; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01928; match to protein family HMM TIGR00318
1195578	K+ transport protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
1195593	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195608	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error
1195609	membrane spanning protein, putative; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01061
1195618	NlpD; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01476; match to protein family HMM PF01551
1195620	acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme); this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
1195652	conserved hypothetical protein; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF04357
1195673	RNA pseudouridine synthase family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAU07662.1; match to protein family HMM PF00849
1195694	excinuclease ABC, B subunit; this gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631
11493336	hypothetical protein, pseudogene; this region contains one or more premature stops and/or frameshifts;identified by glimmer; putative
11493337	hypothetical protein, pseudogene; this gene contains a frame shift which may be the result of a sequencing error; identified by glimmer; putative
11493338	hypothetical protein, pseudogene; this gene contains a frame shift which may be the result of a sequencing error; identified by glimmer; putative
11493339	conserved hypothetical protein, pseudogene; this gene contains a frame shift which may be the result of a sequencing error
11493340	hypothetical protein, pseudogene; this region contains one or more premature stops and/or frameshifts;identified by glimmer; putative
11493341	conserved hypothetical protein, pseudogene; this region contains one or more premature stops and/or frameshifts
11493342	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11493343	hypothetical protein, paralogous family 57, pseudogene; this gene contains a frame shift which may be the result of a sequencing error; identified by glimmer; putative
11473634	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11473635	identified by similarity to EGAD:112356; conserved hypothetical protein
1194021	CdsH; this gene contains a frame shift which may be the result of a sequencing error
1194016	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
11473631	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
1194042	This region contains an authentic frame shift and is not the result of a sequencing artifact.
11473646	conserved hypothetical protein, pseudogene; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to EGAD:112412
11473647	conserved hypothetical protein, pseudogene; this gene contains a premature stop which may be the result of a sequencing error; identified by similarity to EGAD:38216
1194093	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
11473648	hypothetical protein, paralogous family 71, authentic frameshift; this gene contains a frame shift which may be the result of a sequencing error; identified by glimmer; putative
1194089	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11473638	identified by similarity to EGAD:112572; conserved hypothetical protein
1194082	conserved hypothetical protein, authentic point mutation; this gene contains a premature stop which may be the result of a sequencing error; identified by similarity to EGAD:38160
1194069	identified by match to protein family HMM PF01656; conserved hypothetical protein
11473639	conserved hypothetical protein, paralogous family 65, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to EGAD:112578
11473640	conserved hypothetical protein; this gene contains a premature stop which may be the result of a sequencing error
1194080	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
1194084	transposase-like protein, authentic frameshift; this gene contains a premature stop which may be the result of a sequencing error; identified by similarity to GP:2228714
11473641	identified by similarity to EGAD:112589; conserved hypothetical protein
11473642	conserved hypothetical protein, pseudogene; this gene contains a frame shift which may be the result of a sequencing error; identified by similarity to EGAD:112402
1194083	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to EGAD:38153
1194097	conserved hypothetical protein; this region contains one or more premature stops and/or frameshifts
1194081	vls recombination cassettes Vls2-Vls16, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GP:2039282
1194111	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194112	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194135	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194147	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194145	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194220	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194234	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194271	This region contains an authentic frame shift and is not the result of a sequencing artifact.
1194280	This region contains an authentic point mutation, causing a premature stop, and is not the result of a sequencing artifact.
1194281	This region contains an authentic frame shift and is not the result of a sequencing artifact.
11473657	outer membrane protein P13; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF05628
11473658	borrelia orf-D family; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF02999
1194342	borrelia ORF-A superfamily; this gene contains a premature stop which may be the result of a sequencing error; identified by match to protein family HMM PF02414
11473659	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11473651	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF07094
11473652	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
1194379	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
1194365	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF05113
11473653	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error; identified by match to protein family HMM PF05606
11473654	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error
11473655	conserved hypothetical protein; this gene contains a frame shift which may be the result of a sequencing error