; oligo-analysis -type dna -l 3 -return occ,freq -v -format wc -1str -sort -i $RSAT/public_html/data/genomes/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827/genome/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827_start_codons.wc -o $RSAT/public_html/data/genomes/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827/genome/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827_start_codon_frequencies ; Citation: van Helden et al. (1998). J Mol Biol 281(5), 827-42. ; Program version 1.169 ; Slow counting mode ; Oligomer length 3 ; Input file $RSAT/public_html/data/genomes/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827/genome/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827_start_codons.wc ; Input format wc ; Output file $RSAT/public_html/data/genomes/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827/genome/Buchnera_aphidicola_Bp__Baizongia_pistaciae__uid57827_start_codon_frequencies ; Count overlapping matches ; Counted on a single strand ; Background model Bernoulli ; Background estimation method ; Sequence type DNA ; Nb of sequences 507 ; Sum of sequence lengths 1521 ; discarded residues (other letters than ACGT) ; discarded occurrences (contain discarded residues) ; nb possible positions 507 ; total oligo occurrences 507 ; alphabet size 4 ; nb possible oligomers 64 ; oligomers tested for significance 0 ; ; column headers ; 1 seq oligomer sequence ; 2 id oligomer identifier ; 3 obs_freq observed relative frequency ; 4 occ observed occurrences #seq id obs_freq occ atg atg 0.9191321499014 466 gtg gtg 0.0473372781065 24 ttg ttg 0.0236686390533 12 att att 0.0078895463511 4 ata ata 0.0019723865878 1 ; Host name rsat-tagc ; Job started 2014-06-19.011848 ; Job done 2014-06-19.011848 ; Seconds 0.23 ; user 0.23 ; system 0.01 ; cuser 0 ; csystem 0