-- dump date   	20140619_011926
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
713600000001	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
713600000002	NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]; Region: Gid; COG1206
713600000003	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
713600000004	F0F1-type ATP synthase, subunit a [Energy production and conversion]; Region: AtpB; COG0356
713600000005	F0F1 ATP synthase subunit A; Validated; Region: PRK05815
713600000006	F0F1 ATP synthase subunit C; Validated; Region: PRK06876
713600000007	F0F1-type ATP synthase, subunit b [Energy production and conversion]; Region: AtpF; COG0711
713600000008	F0F1 ATP synthase subunit B; Validated; Region: PRK05759
713600000009	F0F1 ATP synthase subunit delta; Validated; Region: PRK05758
713600000010	ATP synthase delta (OSCP) subunit; Region: OSCP; pfam00213
713600000011	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
713600000012	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
713600000013	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
713600000014	beta subunit interaction interface [polypeptide binding]; other site
713600000015	Walker A motif; other site
713600000016	ATP binding site [chemical binding]; other site
713600000017	Walker B motif; other site
713600000018	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
713600000019	mitochondrial ATP synthase gamma subunit; Region: F1-ATPase_gamma; cd12151
713600000020	core domain interface [polypeptide binding]; other site
713600000021	delta subunit interface [polypeptide binding]; other site
713600000022	epsilon subunit interface [polypeptide binding]; other site
713600000023	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
713600000024	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; pfam02874
713600000025	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
713600000026	alpha subunit interaction interface [polypeptide binding]; other site
713600000027	Walker A motif; other site
713600000028	ATP binding site [chemical binding]; other site
713600000029	Walker B motif; other site
713600000030	inhibitor binding site; inhibition site
713600000031	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
713600000032	ATP synthase, F1 epsilon subunit (delta in mitochondria); Region: ATP_synt_epsi; TIGR01216
713600000033	mitochondrial ATP synthase delta subunit; Region: F1-ATPase_delta; cd12152
713600000034	gamma subunit interface [polypeptide binding]; other site
713600000035	epsilon subunit interface [polypeptide binding]; other site
713600000036	LBP interface [polypeptide binding]; other site
713600000037	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
713600000038	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
713600000039	ATP binding site [chemical binding]; other site
713600000040	Mg2+ binding site [ion binding]; other site
713600000041	G-X-G motif; other site
713600000042	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
713600000043	anchoring element; other site
713600000044	dimer interface [polypeptide binding]; other site
713600000045	ATP binding site [chemical binding]; other site
713600000046	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
713600000047	active site
713600000048	putative metal-binding site [ion binding]; other site
713600000049	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
713600000050	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
713600000051	DNA polymerase III subunit beta; Validated; Region: PRK05643
713600000052	putative DNA binding surface [nucleotide binding]; other site
713600000053	dimer interface [polypeptide binding]; other site
713600000054	beta-clamp/clamp loader binding surface; other site
713600000055	beta-clamp/translesion DNA polymerase binding surface; other site
713600000056	DnaA N-terminal domain; Region: DnaA_N; pfam11638
713600000057	chromosomal replication initiator protein DnaA; Region: DnaA; TIGR00362
713600000058	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
713600000059	Walker A motif; other site
713600000060	ATP binding site [chemical binding]; other site
713600000061	Walker B motif; other site
713600000062	arginine finger; other site
713600000063	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
713600000064	DnaA box-binding interface [nucleotide binding]; other site
713600000065	50S ribosomal protein L34; Reviewed; Region: rpmH; PRK00399
713600000066	Ribonuclease P; Region: Ribonuclease_P; cl00457
713600000067	potential frameshift: common BLAST hit: gi|219681959|ref|YP_002468343.1| 60 kDa inner-membrane protein
713600000068	potential frameshift: common BLAST hit: gi|219681403|ref|YP_002467788.1| 60 kDa inner-membrane protein
713600000069	potential frameshift: common BLAST hit: gi|219681959|ref|YP_002468343.1| 60 kDa inner-membrane protein
713600000070	Predicted GTPase [General function prediction only]; Region: ThdF; COG0486
713600000071	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
713600000072	trmE is a tRNA modification GTPase; Region: trmE; cd04164
713600000073	G1 box; other site
713600000074	GTP/Mg2+ binding site [chemical binding]; other site
713600000075	Switch I region; other site
713600000076	G2 box; other site
713600000077	Switch II region; other site
713600000078	G3 box; other site
713600000079	G4 box; other site
713600000080	G5 box; other site
713600000081	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
713600000082	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
713600000083	oligomerisation interface [polypeptide binding]; other site
713600000084	mobile loop; other site
713600000085	roof hairpin; other site
713600000086	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
713600000087	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
713600000088	ring oligomerisation interface [polypeptide binding]; other site
713600000089	ATP/Mg binding site [chemical binding]; other site
713600000090	stacking interactions; other site
713600000091	hinge regions; other site
713600000092	translation elongation factor P; Region: efp; TIGR00038
713600000093	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
713600000094	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
713600000095	RNA binding site [nucleotide binding]; other site
713600000096	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
713600000097	RNA binding site [nucleotide binding]; other site
713600000098	DNA replication protein DnaC; Validated; Region: PRK07952
713600000099	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
713600000100	Walker A motif; other site
713600000101	ATP binding site [chemical binding]; other site
713600000102	Walker B motif; other site
713600000103	potential frameshift: common BLAST hit: gi|219681965|ref|YP_002468349.1| primosomal protein I
713600000104	Conserved hypothetical protein 95; Region: Cons_hypoth95; pfam03602
713600000105	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
713600000106	S-adenosylmethionine binding site [chemical binding]; other site
713600000107	SRP54-type protein, helical bundle domain; Region: SRP54_N; pfam02881
713600000108	signal recognition particle-docking protein FtsY; Region: ftsY; TIGR00064
713600000109	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
713600000110	P loop; other site
713600000111	GTP binding site [chemical binding]; other site
713600000112	potential frameshift: common BLAST hit: gi|219681968|ref|YP_002468352.1| RNA polymerase sigma factor
713600000113	glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Region: glmS; TIGR01135
713600000114	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
713600000115	glutaminase active site [active]
713600000116	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
713600000117	dimer interface [polypeptide binding]; other site
713600000118	active site
713600000119	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
713600000120	dimer interface [polypeptide binding]; other site
713600000121	active site
713600000122	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase; Region: glmU; TIGR01173
713600000123	N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540
713600000124	Substrate binding site; other site
713600000125	Mg++ binding site; other site
713600000126	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
713600000127	active site
713600000128	substrate binding site [chemical binding]; other site
713600000129	CoA binding site [chemical binding]; other site
713600000130	putative hydrolase; Provisional; Region: PRK10976
713600000131	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
713600000132	active site
713600000133	motif I; other site
713600000134	motif II; other site
713600000135	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cl17915
713600000136	motif II; other site
713600000137	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222
713600000138	CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_N_terminal_like; cd03312
713600000139	THF binding site; other site
713600000140	CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_C_terminal_like; cd03311
713600000141	substrate binding site [chemical binding]; other site
713600000142	THF binding site; other site
713600000143	zinc-binding site [ion binding]; other site
713600000144	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
713600000145	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
713600000146	purine monophosphate binding site [chemical binding]; other site
713600000147	dimer interface [polypeptide binding]; other site
713600000148	putative catalytic residues [active]
713600000149	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; smart00798
713600000150	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; cl03362
713600000151	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
713600000152	IHF dimer interface [polypeptide binding]; other site
713600000153	IHF - DNA interface [nucleotide binding]; other site
713600000154	potential frameshift: common BLAST hit: gi|219681975|ref|YP_002468359.1| DNA-directed RNA polymerase beta' subunit
713600000155	potential frameshift: common BLAST hit: gi|219681975|ref|YP_002468359.1| DNA-directed RNA polymerase beta' subunit
713600000156	potential frameshift: common BLAST hit: gi|219681976|ref|YP_002468360.1| DNA-directed RNA polymerase beta chain
713600000157	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
713600000158	core dimer interface [polypeptide binding]; other site
713600000159	peripheral dimer interface [polypeptide binding]; other site
713600000160	L10 interface [polypeptide binding]; other site
713600000161	L11 interface [polypeptide binding]; other site
713600000162	putative EF-Tu interaction site [polypeptide binding]; other site
713600000163	putative EF-G interaction site [polypeptide binding]; other site
713600000164	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
713600000165	23S rRNA interface [nucleotide binding]; other site
713600000166	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
713600000167	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
713600000168	mRNA/rRNA interface [nucleotide binding]; other site
713600000169	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
713600000170	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
713600000171	23S rRNA interface [nucleotide binding]; other site
713600000172	L7/L12 interface [polypeptide binding]; other site
713600000173	putative thiostrepton binding site; other site
713600000174	L25 interface [polypeptide binding]; other site
713600000175	potential frameshift: common BLAST hit: gi|219681981|ref|YP_002468365.1| transcription antitermination protein NusG
713600000176	preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740
713600000177	potential frameshift: common BLAST hit: gi|219681983|ref|YP_002468367.1| UDP-N-acetylenolpyruvoylglucosamine reductase
713600000178	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
713600000179	FAD binding site [chemical binding]; other site
713600000180	acetylornithine deacetylase; Provisional; Region: PRK05111
713600000181	M20 Peptidase acetylornithine deacetylase; Region: M20_ArgE; cd03894
713600000182	metal binding site [ion binding]; metal-binding site
713600000183	putative dimer interface [polypeptide binding]; other site
713600000184	N-acetyl-gamma-glutamyl-phosphate reductase, common form; Region: argC; TIGR01850
713600000185	Semialdehyde dehydrogenase, NAD binding domain; Region: Semialdhyde_dh; smart00859
713600000186	potential frameshift: common BLAST hit: gi|219681431|ref|YP_002467816.1| acetylglutamate kinase
713600000187	argininosuccinate synthase; Provisional; Region: PRK13820
713600000188	Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In...; Region: Argininosuccinate_Synthase; cd01999
713600000189	ANP binding site [chemical binding]; other site
713600000190	Substrate Binding Site II [chemical binding]; other site
713600000191	Substrate Binding Site I [chemical binding]; other site
713600000192	argininosuccinate lyase; Provisional; Region: PRK04833
713600000193	Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359
713600000194	active sites [active]
713600000195	tetramer interface [polypeptide binding]; other site
713600000196	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
713600000197	active site residue [active]
713600000198	Preprotein translocase subunit SecB [Intracellular trafficking and secretion]; Region: SecB; COG1952
713600000199	SecA binding site; other site
713600000200	Preprotein binding site; other site
713600000201	serine acetyltransferase; Provisional; Region: cysE; PRK11132
713600000202	Serine acetyltransferase, N-terminal; Region: SATase_N; smart00971
713600000203	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
713600000204	trimer interface [polypeptide binding]; other site
713600000205	active site
713600000206	substrate binding site [chemical binding]; other site
713600000207	CoA binding site [chemical binding]; other site
713600000208	potential frameshift: common BLAST hit: gi|219681993|ref|YP_002468377.1| RNA polymerase sigma factor
713600000209	potential frameshift: common BLAST hit: gi|219681437|ref|YP_002467822.1| RNA polymerase sigma factor
713600000210	potential frameshift: common BLAST hit: gi|219681994|ref|YP_002468378.1| DNA primase
713600000211	30S ribosomal protein S21; Reviewed; Region: rpsU; PRK00270
713600000212	UGMP family protein; Validated; Region: PRK09604
713600000213	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl17884
713600000214	3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional; Region: ribB; PRK03353
713600000215	3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]; Region: RibB; COG0108
713600000216	potential frameshift: common BLAST hit: gi|219681998|ref|YP_002468382.1| kinase
713600000217	potential frameshift: common BLAST hit: gi|219681999|ref|YP_002468383.1| tRNA nucleotidyltransferase
713600000218	undecaprenyl pyrophosphate phosphatase; Reviewed; Region: PRK00281
713600000219	PTS system glucose-specific transporter subunit; Provisional; Region: PRK09439
713600000220	HPr interaction site; other site
713600000221	glycerol kinase (GK) interaction site [polypeptide binding]; other site
713600000222	active site
713600000223	phosphorylation site [posttranslational modification]
713600000224	potential frameshift: common BLAST hit: gi|219682002|ref|YP_002468386.1| phosphoenolpyruvate-protein phosphotransferase
713600000225	Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367
713600000226	dimerization domain swap beta strand [polypeptide binding]; other site
713600000227	regulatory protein interface [polypeptide binding]; other site
713600000228	active site
713600000229	regulatory phosphorylation site [posttranslational modification]; other site
713600000230	Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031
713600000231	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
713600000232	dimer interface [polypeptide binding]; other site
713600000233	pyridoxal 5'-phosphate binding site [chemical binding]; other site
713600000234	catalytic residue [active]
713600000235	potential frameshift: common BLAST hit: gi|15616692|ref|NP_239904.1| DNA ligase (NAD+)
713600000236	potential frameshift: common BLAST hit: gi|219681449|ref|YP_002467834.1| DNA ligase (NAD+)
713600000237	potential frameshift: common BLAST hit: gi|219682005|ref|YP_002468389.1| DNA ligase (NAD+)
713600000238	potential frameshift: common BLAST hit: gi|219681450|ref|YP_002467835.1| glutamyl-tRNA synthetase
713600000239	Flagellar hook-basal body protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliE; COG1677
713600000240	Flagellar basal body M-ring protein [Cell motility and secretion]; Region: fliF; COG1766
713600000241	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
713600000242	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
713600000243	Flagellar motor switch protein [Cell motility and secretion]; Region: FliG; COG1536
713600000244	Catalytic NodB homology domain of the carbohydrate esterase 4 superfamily; Region: CE4_SF; cl15692
713600000245	FliG C-terminal domain; Region: FliG_C; pfam01706
713600000246	Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliH; COG1317
713600000247	Flagellar assembly protein FliH; Region: FliH; pfam02108
713600000248	flagellar protein export ATPase FliI; Region: FliI_clade1; TIGR03496
713600000249	RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and...; Region: RecA-like_NTPases; cl17233
713600000250	Walker A motif; other site
713600000251	ATP binding site [chemical binding]; other site
713600000252	Walker B motif; other site
713600000253	Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FliJ; COG2882
713600000254	flagellar biosynthesis chaperone; Validated; Region: fliJ; PRK05689
713600000255	Flagellar hook-length control protein [Cell motility and secretion]; Region: FliK; COG3144
713600000256	Flagellar hook-length control protein FliK; Region: Flg_hook; pfam02120
713600000257	Flagellar motor switch protein [Cell motility and secretion]; Region: FliM; COG1868
713600000258	Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]; Region: FliN; COG1886
713600000259	putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional; Region: PRK12430
713600000260	Flagellar biogenesis protein [Cell motility and secretion]; Region: FliO; COG3190
713600000261	flagellar biosynthesis protein FliP; Reviewed; Region: fliP; PRK05699
713600000262	flagellar biosynthesis protein FliQ; Validated; Region: fliQ; PRK05700
713600000263	potential frameshift: common BLAST hit: gi|219682018|ref|YP_002468402.1| flagellar biosynthetic protein FliR
713600000264	50S ribosomal protein L33; Validated; Region: rpmG; PRK00595
713600000265	50S ribosomal protein L28; Reviewed; Region: rpmB; PRK00359
713600000266	potential frameshift: common BLAST hit: gi|219682022|ref|YP_002468406.1| inorganic pyrophosphatase
713600000267	peptidase PmbA; Provisional; Region: PRK11040
713600000268	Predicted methyltransferases [General function prediction only]; Region: COG0313
713600000269	Ribosomal RNA small subunit methyltransferase I, also known as rRNA (cytidine-2'-O-)-methyltransferase RsmI; Region: RsmI; cd11648
713600000270	putative SAM binding site [chemical binding]; other site
713600000271	putative homodimer interface [polypeptide binding]; other site
713600000272	3-oxoacyl-(acyl carrier protein) synthase I; Reviewed; Region: PRK07967
713600000273	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
713600000274	dimer interface [polypeptide binding]; other site
713600000275	active site
713600000276	potential frameshift: common BLAST hit: gi|219682025|ref|YP_002468409.1| transaldolase
713600000277	transketolase; Reviewed; Region: PRK12753
713600000278	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
713600000279	TPP-binding site [chemical binding]; other site
713600000280	dimer interface [polypeptide binding]; other site
713600000281	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
713600000282	PYR/PP interface [polypeptide binding]; other site
713600000283	dimer interface [polypeptide binding]; other site
713600000284	TPP binding site [chemical binding]; other site
713600000285	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
713600000286	succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009
713600000287	M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891
713600000288	metal binding site [ion binding]; metal-binding site
713600000289	dimer interface [polypeptide binding]; other site
713600000290	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
713600000291	dihydrodipicolinate synthase; Region: dapA; TIGR00674
713600000292	dimer interface [polypeptide binding]; other site
713600000293	active site
713600000294	catalytic residue [active]
713600000295	potential frameshift: common BLAST hit: gi|219682029|ref|YP_002468413.1| chorismate synthase
713600000296	hypothetical protein; Provisional; Region: PRK04946
713600000297	Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor...; Region: Ribosomal_L24e_L24; cl00909
713600000298	Smr domain; Region: Smr; pfam01713
713600000299	ATP phosphoribosyltransferase; Reviewed; Region: hisG; PRK00489
713600000300	ATP phosphoribosyltransferase; Region: hisG; TIGR00070
713600000301	ATP phosphoribosyltransferase, C-terminal domain; Region: HisG_C-term; TIGR03455
713600000302	potential frameshift: common BLAST hit: gi|219682032|ref|YP_002468416.1| histidinol-dehydrogenase
713600000303	histidinol-phosphate aminotransferase; Provisional; Region: PRK01688
713600000304	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
713600000305	pyridoxal 5'-phosphate binding site [chemical binding]; other site
713600000306	homodimer interface [polypeptide binding]; other site
713600000307	catalytic residue [active]
713600000308	imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional; Region: PRK05446
713600000309	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
713600000310	active site
713600000311	motif I; other site
713600000312	motif II; other site
713600000313	Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914
713600000314	putative active site pocket [active]
713600000315	4-fold oligomerization interface [polypeptide binding]; other site
713600000316	metal binding residues [ion binding]; metal-binding site
713600000317	3-fold/trimer interface [polypeptide binding]; other site
713600000318	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13170
713600000319	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
713600000320	putative active site [active]
713600000321	oxyanion strand; other site
713600000322	catalytic triad [active]
713600000323	HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA; cd04732
713600000324	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
713600000325	catalytic residues [active]
713600000326	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
713600000327	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
713600000328	substrate binding site [chemical binding]; other site
713600000329	glutamase interaction surface [polypeptide binding]; other site
713600000330	potential frameshift: common BLAST hit: gi|219682038|ref|YP_002468422.1| phosphoribosyl-AMP cyclohydrolase
713600000331	potential frameshift: common BLAST hit: gi|219681483|ref|YP_002467868.1| 6-phosphogluconate dehydrogenase
713600000332	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
713600000333	trimer interface [polypeptide binding]; other site
713600000334	active site
713600000335	methionyl-tRNA synthetase; Reviewed; Region: PRK12268
713600000336	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
713600000337	active site
713600000338	HIGH motif; other site
713600000339	KMSKS motif; other site
713600000340	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
713600000341	tRNA binding surface [nucleotide binding]; other site
713600000342	anticodon binding site; other site
713600000343	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
713600000344	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
713600000345	Ligand Binding Site [chemical binding]; other site
713600000346	TilS substrate binding domain; Region: TilS; pfam09179
713600000347	TilS substrate C-terminal domain; Region: TilS_C; pfam11734
713600000348	Riboflavin synthase alpha chain [Coenzyme metabolism]; Region: RibC; COG0307
713600000349	Lumazine binding domain; Region: Lum_binding; pfam00677
713600000350	Lumazine binding domain; Region: Lum_binding; pfam00677
713600000351	electron transport complex protein RsxA; Provisional; Region: PRK05151
713600000352	ferredoxin; Provisional; Region: PRK08764
713600000353	Putative Fe-S cluster; Region: FeS; pfam04060
713600000354	RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409
713600000355	electron transport complex, RnfABCDGE type, C subunit; Region: rnfC; TIGR01945
713600000356	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
713600000357	potential frameshift: common BLAST hit: gi|219682047|ref|YP_002468431.1| integral membrane protein of SoxR-reducing complex (YdgO)
713600000358	potential frameshift: common BLAST hit: gi|219682047|ref|YP_002468431.1| integral membrane protein of SoxR-reducing complex (YdgO)
713600000359	Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion]; Region: RnfG; COG4659
713600000360	electron transport complex RsxE subunit; Provisional; Region: PRK12405
713600000361	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
713600000362	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
713600000363	minor groove reading motif; other site
713600000364	helix-hairpin-helix signature motif; other site
713600000365	substrate binding pocket [chemical binding]; other site
713600000366	active site
713600000367	Iron-sulfur binding domain of endonuclease III; Region: EndIII_4Fe-2S; cl15304
713600000368	potential frameshift: common BLAST hit: gi|219682051|ref|YP_002468435.1| primosomal protein N'
713600000369	potential frameshift: common BLAST hit: gi|219682051|ref|YP_002468435.1| primosomal protein N'
713600000370	potential frameshift: common BLAST hit: gi|219681496|ref|YP_002467881.1| tyrosyl-tRNA synthetase
713600000371	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
713600000372	potential frameshift: common BLAST hit: gi|15616743|ref|NP_239955.1| putative inner membrane protein
713600000373	potential frameshift: common BLAST hit: gi|219682055|ref|YP_002468439.1| 3-deoxy-7-phosphoheptulonate synthase
713600000374	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK00413
713600000375	The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information...; Region: TGS; cl15768
713600000376	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; pfam07973
713600000377	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
713600000378	active site
713600000379	dimer interface [polypeptide binding]; other site
713600000380	motif 1; other site
713600000381	motif 2; other site
713600000382	motif 3; other site
713600000383	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
713600000384	anticodon binding site; other site
713600000385	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
713600000386	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
713600000387	50S ribosomal protein L35; Reviewed; Region: rpmI; PRK00172
713600000388	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
713600000389	23S rRNA binding site [nucleotide binding]; other site
713600000390	L21 binding site [polypeptide binding]; other site
713600000391	L13 binding site [polypeptide binding]; other site
713600000392	potential frameshift: common BLAST hit: gi|219682060|ref|YP_002468444.1| phenylalanyl-tRNA synthetase alpha chain
713600000393	potential frameshift: common BLAST hit: gi|219682060|ref|YP_002468444.1| phenylalanyl-tRNA synthetase alpha chain
713600000394	phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629
713600000395	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
713600000396	putative tRNA-binding site [nucleotide binding]; other site
713600000397	B3/4 domain; Region: B3_4; pfam03483
713600000398	tRNA synthetase B5 domain; Region: B5; smart00874
713600000399	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
713600000400	dimer interface [polypeptide binding]; other site
713600000401	motif 1; other site
713600000402	motif 3; other site
713600000403	motif 2; other site
713600000404	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; pfam03147
713600000405	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
713600000406	IHF - DNA interface [nucleotide binding]; other site
713600000407	IHF dimer interface [polypeptide binding]; other site
713600000408	potential frameshift: common BLAST hit: gi|219681507|ref|YP_002467892.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase
713600000409	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; PRK00112
713600000410	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
713600000411	preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585
713600000412	Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; Region: GlyS; COG0751
713600000413	potential frameshift: common BLAST hit: gi|219682067|ref|YP_002468451.1| glycyl-tRNA synthetase alpha subunit
713600000414	AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of...; Region: AP2Ec; cd00019
713600000415	AP (apurinic/apyrimidinic) site pocket; other site
713600000416	endonuclease IV; Provisional; Region: PRK01060
713600000417	DNA interaction; other site
713600000418	Metal-binding active site; metal-binding site
713600000419	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
713600000420	5S rRNA interface [nucleotide binding]; other site
713600000421	CTC domain interface [polypeptide binding]; other site
713600000422	L16 interface [polypeptide binding]; other site
713600000423	Uncharacterized membrane-associated protein [Function unknown]; Region: DedA; COG0586
713600000424	SNARE associated Golgi protein; Region: SNARE_assoc; pfam09335
713600000425	peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770
713600000426	SurA N-terminal domain; Region: SurA_N; pfam09312
713600000427	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
713600000428	potential frameshift: common BLAST hit: gi|219681516|ref|YP_002467901.1| dimethyladenosine transferase
713600000429	diadenosine tetraphosphatase; Reviewed; Region: apaH; PRK00166
713600000430	Escherichia coli ApaH and related proteins, metallophosphatase domain; Region: MPP_ApaH; cd07422
713600000431	active site
713600000432	metal binding site [ion binding]; metal-binding site
713600000433	Dihydrofolate reductase [Coenzyme metabolism]; Region: FolA; COG0262
713600000434	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cd00209
713600000435	folate binding site [chemical binding]; other site
713600000436	NADP+ binding site [chemical binding]; other site
713600000437	potential frameshift: common BLAST hit: gi|219681519|ref|YP_002467904.1| carbamoyl-phosphate synthase large chain
713600000438	potential frameshift: common BLAST hit: gi|219681519|ref|YP_002467904.1| carbamoyl-phosphate synthase large chain
713600000439	potential frameshift: common BLAST hit: gi|219682076|ref|YP_002468460.1| carbamoyl-phosphate synthase small subunit
713600000440	Dihydrodipicolinate reductase, N-terminus; Region: DapB_N; pfam01113
713600000441	Dihydrodipicolinate reductase [Amino acid transport and metabolism]; Region: DapB; COG0289
713600000442	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
713600000443	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045
713600000444	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]; Region: lytB; COG0761
713600000445	lipoprotein signal peptidase; Reviewed; Region: lspA; PRK00376
713600000446	potential frameshift: common BLAST hit: gi|15616769|ref|NP_239981.1| isoleucyl-tRNA synthetase
713600000447	potential frameshift: common BLAST hit: gi|219682080|ref|YP_002468464.1| isoleucyl-tRNA synthetase
713600000448	FAD synthase [Coenzyme metabolism]; Region: RibF; COG0196
713600000449	FAD synthetase, N-terminal domain of the bifunctional enzyme; Region: FAD_synthetase_N; cd02064
713600000450	active site
713600000451	Riboflavin kinase; Region: Flavokinase; smart00904
713600000452	30S ribosomal protein S20; Reviewed; Region: rpsT; PRK00239
713600000453	potential frameshift: common BLAST hit: gi|219681527|ref|YP_002467912.1| DnaJ protein
713600000454	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
713600000455	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cl17037
713600000456	nucleotide binding site [chemical binding]; other site
713600000457	NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602
713600000458	NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]; Region: NuoB; COG0377
713600000459	bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional; Region: PRK11742
713600000460	NADH (or F420H2) dehydrogenase, subunit C; Region: NuoC_fam; TIGR01961
713600000461	NADH dehydrogenase subunit D; Validated; Region: PRK06075
713600000462	potential frameshift: common BLAST hit: gi|219682088|ref|YP_002468472.1| ATP synthase subunit E
713600000463	potential frameshift: common BLAST hit: gi|219681533|ref|YP_002467918.1| NADH dehydrogenase I chain F
713600000464	potential frameshift: common BLAST hit: gi|219682089|ref|YP_002468473.1| NADH dehydrogenase I chain F
713600000465	NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973
713600000466	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
713600000467	catalytic loop [active]
713600000468	iron binding site [ion binding]; other site
713600000469	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; pfam10588
713600000470	MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory...; Region: MopB_NDH-1_NuoG2-N7; cd02771
713600000471	[4Fe-4S] binding site [ion binding]; other site
713600000472	MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex...; Region: MopB_CT_NDH-1_NuoG2-N7; cd02788
713600000473	NADH:ubiquinone oxidoreductase subunit H; Provisional; Region: PRK06076
713600000474	NADH dehydrogenase subunit I; Provisional; Region: PRK05888
713600000475	4Fe-4S binding domain; Region: Fer4; pfam00037
713600000476	4Fe-4S binding domain; Region: Fer4; pfam00037
713600000477	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
713600000478	NADH dehydrogenase subunit 6; Provisional; Region: ND6; MTH00213
713600000479	NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; Region: NuoK; COG0713
713600000480	proton-translocating NADH-quinone oxidoreductase, chain L; Region: NDH_I_L; TIGR01974
713600000481	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
713600000482	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
713600000483	potential frameshift: common BLAST hit: gi|219682096|ref|YP_002468480.1| NADH dehydrogenase I chain M
713600000484	NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; Region: NuoN; COG1007
713600000485	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; pfam00361
713600000486	potential frameshift: common BLAST hit: gi|219681542|ref|YP_002467927.1| dihydrofolate synthase
713600000487	potential frameshift: common BLAST hit: gi|219681542|ref|YP_002467927.1| dihydrofolate synthase
713600000488	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
713600000489	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
713600000490	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
713600000491	active site
713600000492	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: ipk; PRK00343
713600000493	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
713600000494	potential frameshift: common BLAST hit: gi|219682101|ref|YP_002468485.1| peptide chain release factor 1
713600000495	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
713600000496	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
713600000497	S-adenosylmethionine binding site [chemical binding]; other site
713600000498	hypothetical protein; Provisional; Region: PRK10941
713600000499	Transglutaminase-like superfamily; Region: Transglut_core2; pfam13369
713600000500	NAD synthase [Coenzyme metabolism]; Region: NadE; COG0171
713600000501	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
713600000502	homodimer interface [polypeptide binding]; other site
713600000503	NAD binding pocket [chemical binding]; other site
713600000504	ATP binding pocket [chemical binding]; other site
713600000505	Mg binding site [ion binding]; other site
713600000506	active-site loop [active]
713600000507	acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180
713600000508	propionate/acetate kinase; Provisional; Region: PRK12379
713600000509	potential frameshift: common BLAST hit: gi|219682106|ref|YP_002468490.1| phosphate acetyltransferase
713600000510	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
713600000511	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
713600000512	catalytic loop [active]
713600000513	iron binding site [ion binding]; other site
713600000514	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
713600000515	dimer interface [polypeptide binding]; other site
713600000516	putative radical transfer pathway; other site
713600000517	diiron center [ion binding]; other site
713600000518	tyrosyl radical; other site
713600000519	potential frameshift: common BLAST hit: gi|219682109|ref|YP_002468493.1| ribonucleotide-diphosphate reductase alpha subunit
713600000520	potential frameshift: common BLAST hit: gi|15616799|ref|NP_240011.1| DNA gyrase subunit A
713600000521	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3416
713600000522	peroxidase; Provisional; Region: PRK15000
713600000523	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
713600000524	dimer interface [polypeptide binding]; other site
713600000525	decamer (pentamer of dimers) interface [polypeptide binding]; other site
713600000526	catalytic triad [active]
713600000527	peroxidatic and resolving cysteines [active]
713600000528	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
713600000529	ligand binding site [chemical binding]; other site
713600000530	active site
713600000531	UGI interface [polypeptide binding]; other site
713600000532	catalytic site [active]
713600000533	potential frameshift: common BLAST hit: gi|219682114|ref|YP_002468498.1| heat shock protein GrpE2
713600000534	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cl03075
713600000535	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
713600000536	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03378
713600000537	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK02231
713600000538	Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]; Region: OlmA; COG2913
713600000539	SmpA / OmlA family; Region: SmpA_OmlA; pfam04355
713600000540	Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain...; Region: GRX_PICOT_like; cd03028
713600000541	putative GSH binding site [chemical binding]; other site
713600000542	catalytic residues [active]
713600000543	ribonuclease T; Provisional; Region: PRK05168
713600000544	DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]; Region: DnaQ; COG0847
713600000545	active site
713600000546	catalytic site [active]
713600000547	substrate binding site [chemical binding]; other site
713600000548	superoxide dismutase; Provisional; Region: PRK10925
713600000549	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
713600000550	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
713600000551	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
713600000552	putative active site [active]
713600000553	catalytic residue [active]
713600000554	GTP-binding protein YchF; Reviewed; Region: PRK09601
713600000555	YchF GTPase; Region: YchF; cd01900
713600000556	G1 box; other site
713600000557	GTP/Mg2+ binding site [chemical binding]; other site
713600000558	Switch I region; other site
713600000559	G2 box; other site
713600000560	Switch II region; other site
713600000561	G3 box; other site
713600000562	G4 box; other site
713600000563	G5 box; other site
713600000564	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
713600000565	threonine synthase; Validated; Region: PRK09225
713600000566	Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498
713600000567	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
713600000568	catalytic residue [active]
713600000569	potential frameshift: common BLAST hit: gi|219682123|ref|YP_002468507.1| homoserine kinase
713600000570	potential frameshift: common BLAST hit: gi|219682124|ref|YP_002468508.1| bifunctional aspartokinase I/homeserine dehydrogenase I
713600000571	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
713600000572	active site
713600000573	pantoate--beta-alanine ligase; Region: panC; TIGR00018
713600000574	Pantoate-beta-alanine ligase; Region: PanC; cd00560
713600000575	active site
713600000576	ATP-binding site [chemical binding]; other site
713600000577	pantoate-binding site; other site
713600000578	HXXH motif; other site
713600000579	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
713600000580	oligomerization interface [polypeptide binding]; other site
713600000581	active site
713600000582	metal binding site [ion binding]; metal-binding site
713600000583	Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755
713600000584	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
713600000585	Eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA; Region: PseudoU_synth_EcTruA; cd02570
713600000586	dimerization interface 3.5A [polypeptide binding]; other site
713600000587	active site
713600000588	penicillin-binding protein 1B; Region: PBP_1b; TIGR02071
713600000589	Transglycosylase; Region: Transgly; pfam00912
713600000590	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl17760
713600000591	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
713600000592	SecA preprotein cross-linking domain; Region: SecA_PP_bind; smart00958
713600000593	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cl17351
713600000594	nucleotide binding region [chemical binding]; other site
713600000595	ATP-binding site [chemical binding]; other site
713600000596	SEC-C motif; Region: SEC-C; pfam02810
713600000597	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
713600000598	dephospho-CoA kinase; Region: TIGR00152
713600000599	CoA-binding site [chemical binding]; other site
713600000600	ATP-binding [chemical binding]; other site
713600000601	guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05096
713600000602	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of...; Region: IMPDH; cd00381
713600000603	active site
713600000604	potential frameshift: common BLAST hit: gi|219682135|ref|YP_002468519.1| pyruvate dehydrogenase E1 component
713600000605	branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed; Region: PRK11856
713600000606	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
713600000607	E3 interaction surface; other site
713600000608	lipoyl attachment site [posttranslational modification]; other site
713600000609	e3 binding domain; Region: E3_binding; pfam02817
713600000610	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
713600000611	dihydrolipoamide dehydrogenase; Reviewed; Region: PRK06467
713600000612	NAD(P)-binding Rossmann-like domain; Region: NAD_binding_8; cl17500
713600000613	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
713600000614	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Region: Pyr_redox_dim; pfam02852
713600000615	S-adenosylmethionine decarboxylase; Provisional; Region: PRK05462
713600000616	potential frameshift: common BLAST hit: gi|219682139|ref|YP_002468523.1| spermidine synthase
713600000617	potential frameshift: common BLAST hit: gi|219682140|ref|YP_002468524.1| 5'-methylthioadenosine nucleosidase
713600000618	iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623
713600000619	cell division protein FtsZ; Validated; Region: PRK09330
713600000620	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
713600000621	nucleotide binding site [chemical binding]; other site
713600000622	SulA interaction site; other site
713600000623	cell division protein FtsA; Reviewed; Region: ftsA; PRK09472
713600000624	Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily; Region: NBD_sugar-kinase_HSP70_actin; cd00012
713600000625	nucleotide binding site [chemical binding]; other site
713600000626	Cell division protein FtsA; Region: FtsA; pfam14450
713600000627	potential frameshift: common BLAST hit: gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase
713600000628	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
713600000629	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
713600000630	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
713600000631	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
713600000632	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Region: murG; TIGR01133
713600000633	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
713600000634	active site
713600000635	homodimer interface [polypeptide binding]; other site
713600000636	potential frameshift: common BLAST hit: gi|219681588|ref|YP_002467974.1| cell division protein FtsW
713600000637	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK03806
713600000638	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
713600000639	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
713600000640	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
713600000641	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
713600000642	Mg++ binding site [ion binding]; other site
713600000643	putative catalytic motif [active]
713600000644	putative substrate binding site [chemical binding]; other site
713600000645	potential frameshift: common BLAST hit: gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
713600000646	potential frameshift: common BLAST hit: gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
713600000647	potential frameshift: common BLAST hit: gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
713600000648	potential frameshift: common BLAST hit: gi|219682150|ref|YP_002468534.1| cell division protein FtsI
713600000649	potential frameshift: common BLAST hit: gi|219682151|ref|YP_002468535.1| cell division protein
713600000650	MraW methylase family; Region: Methyltransf_5; cl17771
713600000651	16S rRNA m(4)C1402 methyltranserfase; Provisional; Region: PRK00050
713600000652	acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895
713600000653	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
713600000654	putative valine binding site [chemical binding]; other site
713600000655	dimer interface [polypeptide binding]; other site
713600000656	Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369
713600000657	potential frameshift: common BLAST hit: gi|219682154|ref|YP_002468538.1| acetolactate synthase large subunit
713600000658	thiamine biosynthesis lipoprotein ApbE; Provisional; Region: PRK10461
713600000659	ApbE family; Region: ApbE; pfam02424
713600000660	serine endoprotease; Provisional; Region: PRK10942
713600000661	Trypsin-like peptidase domain; Region: Trypsin_2; pfam13365
713600000662	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
713600000663	protein binding site [polypeptide binding]; other site
713600000664	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
713600000665	protein binding site [polypeptide binding]; other site
713600000666	potential frameshift: common BLAST hit: gi|219681599|ref|YP_002467985.1| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
713600000667	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
713600000668	active site
713600000669	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
713600000670	rRNA interaction site [nucleotide binding]; other site
713600000671	S8 interaction site; other site
713600000672	putative laminin-1 binding site; other site
713600000673	potential frameshift: common BLAST hit: gi|219682159|ref|YP_002468543.1| elongation factor Ts
713600000674	potential frameshift: common BLAST hit: gi|219682160|ref|YP_002468544.1| uridylate kinase
713600000675	ribosome recycling factor; Reviewed; Region: frr; PRK00083
713600000676	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are "recycled" and ready for another...; Region: RRF; cd00520
713600000677	hinge region; other site
713600000678	1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]; Region: Dxr; COG0743
713600000679	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
713600000680	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
713600000681	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
713600000682	Undecaprenyl pyrophosphate synthase [Lipid metabolism]; Region: UppS; COG0020
713600000683	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
713600000684	catalytic residue [active]
713600000685	putative FPP diphosphate  binding site; other site
713600000686	putative FPP binding hydrophobic cleft; other site
713600000687	dimer interface [polypeptide binding]; other site
713600000688	putative IPP diphosphate binding site; other site
713600000689	potential frameshift: common BLAST hit: gi|219682164|ref|YP_002468548.1| YaeT
713600000690	potential frameshift: common BLAST hit: gi|219682164|ref|YP_002468548.1| YaeT
713600000691	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
713600000692	potential frameshift: common BLAST hit: gi|219682166|ref|YP_002468550.1| DNA polymerase III alpha chain
713600000693	potential frameshift: common BLAST hit: gi|219681609|ref|YP_002467995.1| DNA polymerase III alpha chain
713600000694	prolyl-tRNA synthetase; Provisional; Region: PRK09194
713600000695	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ProRS_core_prok; cd00779
713600000696	dimer interface [polypeptide binding]; other site
713600000697	motif 1; other site
713600000698	active site
713600000699	motif 2; other site
713600000700	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
713600000701	putative deacylase active site [active]
713600000702	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
713600000703	active site
713600000704	motif 3; other site
713600000705	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
713600000706	anticodon binding site; other site
713600000707	flagellar biosynthetic protein FlhB; Region: flhB; TIGR00328
713600000708	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
713600000709	potential frameshift: common BLAST hit: gi|219682169|ref|YP_002468553.1| flagellar biosynthetic protein FlhA
713600000710	potential frameshift: common BLAST hit: gi|219682169|ref|YP_002468553.1| flagellar biosynthetic protein FlhA
713600000711	potential frameshift: common BLAST hit: gi|219682170|ref|YP_002468554.1| arginyl-tRNA synthetase
713600000712	hydroxyacylglutathione hydrolase; Region: GSH_gloB; TIGR03413
713600000713	RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner; Region: RNase_H; cl14782
713600000714	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
713600000715	active site
713600000716	RNA/DNA hybrid binding site [nucleotide binding]; other site
713600000717	DNA polymerase III, epsilon subunit, Proteobacterial; Region: dnaQ_proteo; TIGR01406
713600000718	DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins; Region: DNA_pol_III_epsilon_Ecoli_like; cd06131
713600000719	active site
713600000720	catalytic site [active]
713600000721	substrate binding site [chemical binding]; other site
713600000722	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
713600000723	dimer interface [polypeptide binding]; other site
713600000724	active site
713600000725	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
713600000726	active site
713600000727	Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576
713600000728	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
713600000729	dimer interface [polypeptide binding]; other site
713600000730	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
713600000731	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2914
713600000732	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
713600000733	SmpB-tmRNA interface; other site
713600000734	Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a...; Region: nucleoside_deaminase; cd01285
713600000735	nucleoside/Zn binding site; other site
713600000736	dimer interface [polypeptide binding]; other site
713600000737	catalytic motif [active]
713600000738	Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]; Region: AcpS; COG0736
713600000739	GTPase [General function prediction only]; Region: Era; COG1159
713600000740	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
713600000741	G1 box; other site
713600000742	GTP/Mg2+ binding site [chemical binding]; other site
713600000743	Switch I region; other site
713600000744	G2 box; other site
713600000745	Switch II region; other site
713600000746	G3 box; other site
713600000747	G4 box; other site
713600000748	G5 box; other site
713600000749	ribonuclease III; Reviewed; Region: rnc; PRK00102
713600000750	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
713600000751	dimerization interface [polypeptide binding]; other site
713600000752	active site
713600000753	metal binding site [ion binding]; metal-binding site
713600000754	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
713600000755	dsRNA binding site [nucleotide binding]; other site
713600000756	potential frameshift: common BLAST hit: gi|219682182|ref|YP_002468566.1| signal peptidase I
713600000757	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
713600000758	GTP-binding protein LepA; Provisional; Region: PRK05433
713600000759	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
713600000760	G1 box; other site
713600000761	putative GEF interaction site [polypeptide binding]; other site
713600000762	GTP/Mg2+ binding site [chemical binding]; other site
713600000763	Switch I region; other site
713600000764	G2 box; other site
713600000765	G3 box; other site
713600000766	Switch II region; other site
713600000767	G4 box; other site
713600000768	G5 box; other site
713600000769	lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu...; Region: lepA_II; cd03699
713600000770	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
713600000771	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
713600000772	Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: TrmU; COG0482
713600000773	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
713600000774	Ligand Binding Site [chemical binding]; other site
713600000775	Uncharacterized protein involved in purine metabolism [General function prediction only]; Region: COG2915
713600000776	potential frameshift: common BLAST hit: gi|219681629|ref|YP_002468015.1| adenylosuccinate lyase
713600000777	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL).  LTs...; Region: LT_GEWL; cd00254
713600000778	N-acetyl-D-glucosamine binding site [chemical binding]; other site
713600000779	catalytic residue [active]
713600000780	Enoyl-[acyl-carrier-protein]; Region: FabI; COG0623
713600000781	Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372
713600000782	NAD binding site [chemical binding]; other site
713600000783	homotetramer interface [polypeptide binding]; other site
713600000784	homodimer interface [polypeptide binding]; other site
713600000785	substrate binding site [chemical binding]; other site
713600000786	active site
713600000787	Exoribonuclease II [Transcription]; Region: Rnb; COG4776
713600000788	Ribonuclease B OB domain; Region: OB_RNB; pfam08206
713600000789	RNB domain; Region: RNB; pfam00773
713600000790	hypothetical protein; Provisional; Region: PRK11111
713600000791	potential frameshift: common BLAST hit: gi|219682191|ref|YP_002468575.1| lipoate-protein ligase B
713600000792	potential frameshift: common BLAST hit: gi|15616880|ref|NP_240093.1| lipoyl synthase
713600000793	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase...; Region: OMP_decarboxylase_like; cd04725
713600000794	active site
713600000795	dimer interface [polypeptide binding]; other site
713600000796	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
713600000797	dimerization interface [polypeptide binding]; other site
713600000798	active site
713600000799	global DNA-binding transcriptional dual regulator H-NS; Provisional; Region: PRK10947
713600000800	Domain in histone-like proteins of HNS family; Region: HNS; smart00528
713600000801	cardiolipin synthetase; Reviewed; Region: cls; PRK01642
713600000802	Phospholipase_D-nuclease N-terminal; Region: PLDc_N; pfam13396
713600000803	Catalytic domain, repeat 1, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_1; cd09152
713600000804	putative active site [active]
713600000805	catalytic site [active]
713600000806	Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase and similar proteins; Region: PLDc_EcCLS_like_2; cd09158
713600000807	putative active site [active]
713600000808	catalytic site [active]
713600000809	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
713600000810	Intracellular septation protein A [Cell division and chromosome partitioning]; Region: COG2917
713600000811	potential frameshift: common BLAST hit: gi|219681642|ref|YP_002468028.1| predicted inner membrane protein (YciC)
713600000812	potential frameshift: common BLAST hit: gi|219682200|ref|YP_002468584.1| tryptophan synthase alpha chain
713600000813	tryptophan synthase, beta subunit; Region: trpB; TIGR00263
713600000814	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
713600000815	pyridoxal 5'-phosphate binding site [chemical binding]; other site
713600000816	catalytic residue [active]
713600000817	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional; Region: PRK09427
713600000818	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
713600000819	active site
713600000820	ribulose/triose binding site [chemical binding]; other site
713600000821	phosphate binding site [ion binding]; other site
713600000822	substrate (anthranilate) binding pocket [chemical binding]; other site
713600000823	product (indole) binding pocket [chemical binding]; other site
713600000824	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are...; Region: PRAI; cd00405
713600000825	active site
713600000826	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
713600000827	anthranilate phosphoribosyltransferase; Region: trpD; TIGR01245
713600000828	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
713600000829	EamA-like transporter family; Region: EamA; pfam00892
713600000830	EamA-like transporter family; Region: EamA; pfam00892
713600000831	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
713600000832	Pseudouridine synthase, Escherichia coli RluB like; Region: PseudoU_synth_RluB; cd02556
713600000833	probable active site [active]
713600000834	Peptidase family S49 N-terminal; Region: Peptidase_S49_N; pfam08496
713600000835	putative inner membrane peptidase; Provisional; Region: PRK11778
713600000836	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
713600000837	tandem repeat interface [polypeptide binding]; other site
713600000838	oligomer interface [polypeptide binding]; other site
713600000839	active site residues [active]
713600000840	potential frameshift: common BLAST hit: gi|219682206|ref|YP_002468590.1| DNA topoisomerase I
713600000841	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]; Region: SuhB; COG0483
713600000842	IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be...; Region: IMPase; cd01639
713600000843	active site
713600000844	dimerization interface [polypeptide binding]; other site
713600000845	ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194
713600000846	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
713600000847	FeS/SAM binding site; other site
713600000848	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366
713600000849	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
713600000850	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
713600000851	potential frameshift: common BLAST hit: gi|219681653|ref|YP_002468039.1| histidyl-tRNA synthetase
713600000852	serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011
713600000853	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
713600000854	dimer interface [polypeptide binding]; other site
713600000855	active site
713600000856	glycine-pyridoxal phosphate binding site [chemical binding]; other site
713600000857	folate binding site [chemical binding]; other site
713600000858	Dethiobiotin synthetase [Coenzyme metabolism]; Region: BioD; COG0132
713600000859	AAA domain; Region: AAA_26; pfam13500
713600000860	biotin synthase; Provisional; Region: PRK15108
713600000861	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
713600000862	FeS/SAM binding site; other site
713600000863	Biotin and Thiamin Synthesis associated domain; Region: BATS; smart00876
713600000864	adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated; Region: PRK07986
713600000865	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
713600000866	inhibitor-cofactor binding pocket; inhibition site
713600000867	pyridoxal 5'-phosphate binding site [chemical binding]; other site
713600000868	catalytic residue [active]
713600000869	6-phosphogluconolactonase; Provisional; Region: PRK11028
713600000870	CarD-like/TRCF domain; Region: CarD_TRCF; smart01058
713600000871	DEAD-like helicases superfamily; Region: DEXDc; smart00487
713600000872	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
713600000873	ATP binding site [chemical binding]; other site
713600000874	putative Mg++ binding site [ion binding]; other site
713600000875	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
713600000876	nucleotide binding region [chemical binding]; other site
713600000877	ATP-binding site [chemical binding]; other site
713600000878	TRCF domain; Region: TRCF; pfam03461
713600000879	lipoprotein releasing system, transmembrane protein, LolC/E family; Region: lolCE; TIGR02212
713600000880	lipoprotein releasing system, ATP-binding protein; Region: LolD_lipo_ex; TIGR02211
713600000881	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein; Region: ABC_MJ0796_LolCDE_FtsE; cd03255
713600000882	Walker A/P-loop; other site
713600000883	ATP binding site [chemical binding]; other site
713600000884	Q-loop/lid; other site
713600000885	ABC transporter signature motif; other site
713600000886	Walker B; other site
713600000887	D-loop; other site
713600000888	H-loop/switch region; other site
713600000889	potential frameshift: common BLAST hit: gi|85059056|ref|YP_454758.1| outer membrane-specific lipoprotein transporter subunit LolE
713600000890	glyceraldehyde-3-phosphate dehydrogenase A; Provisional; Region: gapA; PRK15425
713600000891	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Region: Gp_dh_N; pfam00044
713600000892	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; pfam02800
713600000893	flavodoxin FldA; Validated; Region: PRK09267
713600000894	Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]; Region: PhrB; COG0415
713600000895	DNA photolyase; Region: DNA_photolyase; pfam00875
713600000896	Uncharacterized conserved protein [Function unknown]; Region: COG0327
713600000897	NIF3 (NGG1p interacting factor 3); Region: NIF3; cl15371
713600000898	2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404
713600000899	Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of...; Region: TPP_E1_OGDC_like; cd02016
713600000900	TPP-binding site [chemical binding]; other site
713600000901	Transketolase, pyrimidine binding domain; Region: Transket_pyr; pfam02779
713600000902	2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); Region: sucB; TIGR01347
713600000903	Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid...; Region: lipoyl_domain; cd06849
713600000904	E3 interaction surface; other site
713600000905	lipoyl attachment site [posttranslational modification]; other site
713600000906	2-oxoacid dehydrogenases acyltransferase (catalytic domain); Region: 2-oxoacid_dh; pfam00198
713600000907	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
713600000908	catalytic core [active]
713600000909	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
713600000910	potential frameshift: common BLAST hit: gi|219682224|ref|YP_002468608.1| 6-phosphofructokinase
713600000911	potential frameshift: common BLAST hit: gi|219681670|ref|YP_002468056.1| glycerol uptake facilitator protein
713600000912	triosephosphate isomerase; Provisional; Region: PRK14567
713600000913	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
713600000914	substrate binding site [chemical binding]; other site
713600000915	dimer interface [polypeptide binding]; other site
713600000916	catalytic triad [active]
713600000917	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
713600000918	IHF dimer interface [polypeptide binding]; other site
713600000919	IHF - DNA interface [nucleotide binding]; other site
713600000920	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
713600000921	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
713600000922	RNA binding site [nucleotide binding]; other site
713600000923	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
713600000924	RNA binding site [nucleotide binding]; other site
713600000925	S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec3; cd05688
713600000926	RNA binding site [nucleotide binding]; other site
713600000927	S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec4; cd05689
713600000928	RNA binding site [nucleotide binding]; other site
713600000929	S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec5; cd05690
713600000930	RNA binding site [nucleotide binding]; other site
713600000931	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
713600000932	RNA binding site [nucleotide binding]; other site
713600000933	Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor; Region: CMPK; cd02020
713600000934	CMP-binding site; other site
713600000935	The sites determining sugar specificity; other site
713600000936	Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190
713600000937	active site
713600000938	potential frameshift: common BLAST hit: gi|219682229|ref|YP_002468613.1| 3-phosphoshikimate 1-carboxyvinyltransferase
713600000939	potential frameshift: common BLAST hit: gi|219682230|ref|YP_002468614.1| phosphoserine aminotransferase
713600000940	potential frameshift: common BLAST hit: gi|219682231|ref|YP_002468615.1| seryl-tRNA synthetase
713600000941	potential frameshift: common BLAST hit: gi|219682232|ref|YP_002468616.1| thioredoxin reductase
713600000942	potential frameshift: common BLAST hit: gi|15616923|ref|NP_240136.1| thioredoxin reductase
713600000943	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
713600000944	rRNA binding site [nucleotide binding]; other site
713600000945	predicted 30S ribosome binding site; other site
713600000946	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
713600000947	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
713600000948	dimer interface [polypeptide binding]; other site
713600000949	anticodon binding site; other site
713600000950	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of...; Region: AspRS_core; cd00777
713600000951	homodimer interface [polypeptide binding]; other site
713600000952	motif 1; other site
713600000953	active site
713600000954	motif 2; other site
713600000955	GAD domain; Region: GAD; pfam02938
713600000956	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
713600000957	active site
713600000958	motif 3; other site
713600000959	ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108
713600000960	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
713600000961	ABC-ATPase subunit  interface; other site
713600000962	dimer interface [polypeptide binding]; other site
713600000963	putative PBP binding regions; other site
713600000964	high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544
713600000965	ATP-binding cassette domain of the metal-type transporters; Region: ABC_Metallic_Cations; cd03235
713600000966	pyruvate kinase; Provisional; Region: PRK05826
713600000967	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl17342
713600000968	domain interfaces; other site
713600000969	active site
713600000970	potential frameshift: common BLAST hit: gi|219682238|ref|YP_002468622.1| glucose-6-phosphate 1-dehydrogenase
713600000971	heat shock protein HtpX; Provisional; Region: PRK05457
713600000972	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
713600000973	DNA-binding site [nucleotide binding]; DNA binding site
713600000974	RNA-binding motif; other site
713600000975	Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]; Region: TerC; COG0861
713600000976	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
713600000977	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
713600000978	Transporter associated domain; Region: CorC_HlyC; smart01091
713600000979	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214
713600000980	Glycoprotease family; Region: Peptidase_M22; pfam00814
713600000981	cell division topological specificity factor MinE; Reviewed; Region: minE; PRK00296
713600000982	cell division inhibitor MinD; Provisional; Region: PRK10818
713600000983	Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal...; Region: MinD; cd02036
713600000984	Switch I; other site
713600000985	Switch II; other site
713600000986	potential frameshift: common BLAST hit: gi|219682245|ref|YP_002468629.1| cell division inhibitor MinC
713600000987	Methyltransferase small domain N-terminal; Region: MTS_N; pfam08468
713600000988	potential frameshift: common BLAST hit: gi|219682246|ref|YP_002468630.1| 16S rRNA m(2)G 1207 methyltransferase
713600000989	outer membrane protein A; Reviewed; Region: PRK10808
713600000990	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl17254
713600000991	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
713600000992	ligand binding site [chemical binding]; other site
713600000993	Uncharacterized membrane protein, putative virulence factor [General function prediction only]; Region: MviN; COG0728
713600000994	MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_MurJ_like; cd13123
713600000995	Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294
713600000996	active site
713600000997	substrate binding pocket [chemical binding]; other site
713600000998	dimer interface [polypeptide binding]; other site
713600000999	Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3418
713600001000	Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: FlgA; COG1261
713600001001	SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB; Region: SAF_CpaB_FlgA_like; cd11614
713600001002	flagellar basal-body rod protein FlgB; Region: FlgB; TIGR01396
713600001003	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK07182
713600001004	Flagellar basal body rod protein [Cell motility and secretion]; Region: FlgC; COG1558
713600001005	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
713600001006	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
713600001007	Flagellar hook capping protein [Cell motility and secretion]; Region: FlgD; COG1843
713600001008	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
713600001009	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
713600001010	Flagellar hook protein FlgE [Cell motility and secretion]; Region: FlgE; COG1749
713600001011	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
713600001012	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
713600001013	Flagellar basal body rod protein [Cell motility and secretion]; Region: FlgF; COG4787
713600001014	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
713600001015	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
713600001016	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
713600001017	Flagella basal body rod protein; Region: Flg_bb_rod; pfam00460
713600001018	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; pfam06429
713600001019	Flagellar basal body L-ring protein [Cell motility and secretion]; Region: FlgH; COG2063
713600001020	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK00249
713600001021	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
713600001022	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
713600001023	Rod binding protein [Cell envelope biogenesis, outer membrane / Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]; Region: COG3951
713600001024	potential frameshift: common BLAST hit: gi|15616952|ref|NP_240165.1| flagellar hook-associated protein 1
713600001025	potential frameshift: common BLAST hit: gi|15616953|ref|NP_240166.1| ribonuclease E
713600001026	23S rRNA pseudouridylate synthase C; Provisional; Region: PRK11025
713600001027	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
713600001028	RNA binding surface [nucleotide binding]; other site
713600001029	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
713600001030	active site
713600001031	50S ribosomal protein L32; Validated; Region: rpmF; PRK01110
713600001032	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
713600001033	(acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]; Region: FabD; COG0331
713600001034	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
713600001035	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
713600001036	NAD(P) binding site [chemical binding]; other site
713600001037	active site
713600001038	thymidylate kinase; Validated; Region: tmk; PRK00698
713600001039	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
713600001040	TMP-binding site; other site
713600001041	ATP-binding site [chemical binding]; other site
713600001042	DNA polymerase III subunit delta'; Validated; Region: PRK07993
713600001043	DNA polymerase III, delta subunit, C terminal; Region: DNApol3-delta_C; pfam09115
713600001044	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
713600001045	active site
713600001046	PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089
713600001047	Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism]; Region: PtsG; COG1263
713600001048	PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_glc; cd00212
713600001049	active site turn [active]
713600001050	phosphorylation site [posttranslational modification]
713600001051	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
713600001052	nucleotide binding site/active site [active]
713600001053	HIT family signature motif; other site
713600001054	catalytic residue [active]
713600001055	Protein of unknown function (DUF3897); Region: DUF3897; cl17494
713600001056	potential frameshift: common BLAST hit: gi|15616964|ref|NP_240177.1| OmpF-like porin
713600001057	asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932
713600001058	EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB...; Region: EcAsnRS_like_N; cd04318
713600001059	putative dimer interface [polypeptide binding]; other site
713600001060	putative anticodon binding site; other site
713600001061	Asx tRNA synthetase (AspRS/AsnRS) class II core domain.  Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as...; Region: AsxRS_core; cd00776
713600001062	homodimer interface [polypeptide binding]; other site
713600001063	motif 1; other site
713600001064	motif 2; other site
713600001065	active site
713600001066	motif 3; other site
713600001067	nicotinate phosphoribosyltransferase; Region: NAPRTase; TIGR01514
713600001068	Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting; Region: PncB_like; cd01401
713600001069	active site
713600001070	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl17186
713600001071	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
713600001072	active site
713600001073	catalytic residues [active]
713600001074	quinone interaction residues [chemical binding]; other site
713600001075	substrate binding site [chemical binding]; other site
713600001076	potential frameshift: common BLAST hit: gi|219681721|ref|YP_002468107.1| 23S rRNA m2G2445 methyltransferase (YcbY)
713600001077	potential frameshift: common BLAST hit: gi|219682276|ref|YP_002468660.1| 23S rRNA m2G2445 methyltransferase (YcbY)
713600001078	potential frameshift: common BLAST hit: gi|219682276|ref|YP_002468660.1| 23S rRNA m2G2445 methyltransferase (YcbY)
713600001079	potential frameshift: common BLAST hit: gi|15616969|ref|NP_240182.1| ABC transporter ATP-binding protein Uup
713600001080	potential frameshift: common BLAST hit: gi|15616969|ref|NP_240182.1| ABC transporter ATP-binding protein Uup
713600001081	putative rhodanese-related sulfurtransferase; Provisional; Region: PRK00142
713600001082	Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins; Region: RHOD_YceA; cd01518
713600001083	active site residue [active]
713600001084	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
713600001085	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
713600001086	active site
713600001087	HIGH motif; other site
713600001088	nucleotide binding site [chemical binding]; other site
713600001089	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
713600001090	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
713600001091	active site
713600001092	KMSKS motif; other site
713600001093	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
713600001094	tRNA binding surface [nucleotide binding]; other site
713600001095	anticodon binding site; other site
713600001096	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
713600001097	multifunctional aminopeptidase A; Provisional; Region: PRK00913
713600001098	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
713600001099	interface (dimer of trimers) [polypeptide binding]; other site
713600001100	Substrate-binding/catalytic site; other site
713600001101	Zn-binding sites [ion binding]; other site
713600001102	potential frameshift: common BLAST hit: gi|15616973|ref|NP_240186.1| ornithine carbamoyltransferase subunit I
713600001103	Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]; Region: PyrB; COG0540
713600001104	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
713600001105	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; Region: OTCace; pfam00185
713600001106	Aspartate carbamoyltransferase, regulatory subunit [Nucleotide transport and metabolism]; Region: PyrI; COG1781
713600001107	Aspartate carbamoyltransferase regulatory chain, allosteric domain; Region: PyrI; pfam01948
713600001108	Aspartate carbamoyltransferase regulatory chain, metal binding domain; Region: PyrI_C; pfam02748
713600001109	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
713600001110	homotrimer interaction site [polypeptide binding]; other site
713600001111	putative active site [active]
713600001112	ATP-dependent RNA helicase DeaD; Provisional; Region: PRK11634
713600001113	DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker  B motif; Region: DEADc; cd00268
713600001114	ATP binding site [chemical binding]; other site
713600001115	Mg++ binding site [ion binding]; other site
713600001116	motif III; other site
713600001117	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
713600001118	nucleotide binding region [chemical binding]; other site
713600001119	ATP-binding site [chemical binding]; other site
713600001120	RNA recognition motif in Escherichia coli cold-shock DEAD box protein A (CsdA) and similar proteins; Region: RRM_EcCsdA_like; cd12499
713600001121	putative RNA binding site [nucleotide binding]; other site
713600001122	potential frameshift: common BLAST hit: gi|219682286|ref|YP_002468670.1| polyribonucleotide nucleotidyltransferase
713600001123	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
713600001124	16S/18S rRNA binding site [nucleotide binding]; other site
713600001125	S13e-L30e interaction site [polypeptide binding]; other site
713600001126	25S rRNA binding site [nucleotide binding]; other site
713600001127	potential frameshift: common BLAST hit: gi|219682288|ref|YP_002468672.1| tRNA pseudouridine 55 synthase
713600001128	Ribosome-binding factor A; Region: RBFA; pfam02033
713600001129	Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364
713600001130	translation initiation factor IF-2; Validated; Region: infB; PRK05306
713600001131	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
713600001132	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
713600001133	G1 box; other site
713600001134	putative GEF interaction site [polypeptide binding]; other site
713600001135	GTP/Mg2+ binding site [chemical binding]; other site
713600001136	Switch I region; other site
713600001137	G2 box; other site
713600001138	G3 box; other site
713600001139	Switch II region; other site
713600001140	G4 box; other site
713600001141	G5 box; other site
713600001142	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
713600001143	Translation-initiation factor 2; Region: IF-2; pfam11987
713600001144	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
713600001145	potential frameshift: common BLAST hit: gi|219681736|ref|YP_002468122.1| transcription elongation factor NusA
713600001146	phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887
713600001147	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
713600001148	active site
713600001149	substrate binding site [chemical binding]; other site
713600001150	metal binding site [ion binding]; metal-binding site
713600001151	potential frameshift: common BLAST hit: gi|28952053|ref|NP_240199.2| cell division protein FtsH
713600001152	23S rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: FtsJ; COG0293
713600001153	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
713600001154	S-adenosylmethionine binding site [chemical binding]; other site
713600001155	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
713600001156	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
713600001157	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
713600001158	Predicted transcriptional regulator, BolA superfamily [Transcription]; Region: COG5007
713600001159	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
713600001160	hinge; other site
713600001161	active site
713600001162	50S ribosomal protein L21/unknown domain fusion protein; Provisional; Region: PRK12278
713600001163	Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]; Region: RplU; COG0261
713600001164	Ribosomal L27 protein; Region: Ribosomal_L27; cl00359
713600001165	GTPase CgtA; Reviewed; Region: obgE; PRK12299
713600001166	GTP1/OBG; Region: GTP1_OBG; pfam01018
713600001167	Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Region: Ras_like_GTPase; cl17170
713600001168	G1 box; other site
713600001169	GTP/Mg2+ binding site [chemical binding]; other site
713600001170	G2 box; other site
713600001171	Switch I region; other site
713600001172	G3 box; other site
713600001173	Switch II region; other site
713600001174	30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132
713600001175	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
713600001176	23S rRNA interface [nucleotide binding]; other site
713600001177	L3 interface [polypeptide binding]; other site
713600001178	bifunctional chorismate mutase/prephenate dehydratase; Provisional; Region: pheA; PRK10622
713600001179	chorismate mutase domain of proteobacterial P-protein, clade 1; Region: CM_P_1; TIGR01797
713600001180	Prephenate dehydratase; Region: PDT; pfam00800
713600001181	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
713600001182	putative L-Phe binding site [chemical binding]; other site
713600001183	potential frameshift: common BLAST hit: gi|219682304|ref|YP_002468688.1| signal recognition particle protein
713600001184	30S ribosomal protein S16; Reviewed; Region: rpsP; PRK00040
713600001185	PRC-barrel domain; Region: PRC; pfam05239
713600001186	potential frameshift: common BLAST hit: gi|219682307|ref|YP_002468691.1| tRNA (guanine-N1)-methyltransferase
713600001187	50S ribosomal protein L19; Provisional; Region: rplS; PRK05338
713600001188	protease TldD; Provisional; Region: tldD; PRK10735
713600001189	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
713600001190	Dehydroquinase class II; Region: DHquinase_II; pfam01220
713600001191	active site
713600001192	trimer interface [polypeptide binding]; other site
713600001193	dimer interface [polypeptide binding]; other site
713600001194	Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]; Region: Fis; COG2901
713600001195	Bacterial regulatory protein, Fis family; Region: HTH_8; cl17420
713600001196	23S rRNA pseudouridine synthase D; Provisional; Region: rluD; PRK11180
713600001197	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
713600001198	RNA binding surface [nucleotide binding]; other site
713600001199	Pseudouridine synthase, RsuA/RluD family; Region: PseudoU_synth_RluCD_like; cd02869
713600001200	active site
713600001201	Outer membrane lipoprotein; Region: YfiO; pfam13525
713600001202	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
713600001203	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: AlaRS_core; cd00673
713600001204	motif 1; other site
713600001205	active site
713600001206	motif 2; other site
713600001207	motif 3; other site
713600001208	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; smart00863
713600001209	carbon storage regulator; Provisional; Region: PRK01712
713600001210	potential frameshift: common BLAST hit: gi|219682316|ref|YP_002468700.1| glutamate-cysteine ligase
713600001211	potential frameshift: common BLAST hit: gi|219682317|ref|YP_002468701.1| S-adenosylmethionine synthetase
713600001212	Endonuclease I; Region: Endonuclease_1; cl01003
713600001213	RNA methyltransferase, RsmE family; Region: TIGR00046
713600001214	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1385
713600001215	RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the...; Region: RPI_A; cd01398
713600001216	tetramer (dimer of dimers) interface [polypeptide binding]; other site
713600001217	active site
713600001218	dimer interface [polypeptide binding]; other site
713600001219	potential protein location (hypothetical protein CWU_02670 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]) that overlaps RNA (tRNA-L)
713600001220	potential frameshift: common BLAST hit: gi|219682321|ref|YP_002468705.1| glutaminyl-tRNA synthetase
713600001221	CTP synthetase; Validated; Region: pyrG; PRK05380
713600001222	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
713600001223	Catalytic site [active]
713600001224	active site
713600001225	UTP binding site [chemical binding]; other site
713600001226	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
713600001227	active site
713600001228	putative oxyanion hole; other site
713600001229	catalytic triad [active]
713600001230	enolase; Provisional; Region: eno; PRK00077
713600001231	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
713600001232	dimer interface [polypeptide binding]; other site
713600001233	metal binding site [ion binding]; metal-binding site
713600001234	substrate binding pocket [chemical binding]; other site
713600001235	potential frameshift: common BLAST hit: gi|219682324|ref|YP_002468708.1| lipoprotein NlpD precursor
713600001236	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
713600001237	homotrimer interaction site [polypeptide binding]; other site
713600001238	zinc binding site [ion binding]; other site
713600001239	CDP-binding sites; other site
713600001240	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
713600001241	substrate binding site; other site
713600001242	dimer interface; other site
713600001243	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form...; Region: APSK; cd02027
713600001244	ligand-binding site [chemical binding]; other site
713600001245	potential frameshift: common BLAST hit: gi|15617022|ref|NP_240235.1| sulfate adenylate transferase subunit 1
713600001246	sulfate adenylyltransferase, small subunit; Region: CysD; TIGR02039
713600001247	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
713600001248	Active Sites [active]
713600001249	siroheme synthase; Provisional; Region: cysG; PRK10637
713600001250	Putative NAD(P)-binding; Region: NAD_binding_7; pfam13241
713600001251	Sirohaem synthase dimerisation region; Region: CysG_dimeriser; pfam10414
713600001252	Uroporphyrin-III C-methyltransferase (S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT); Region: SUMT; cd11642
713600001253	active site
713600001254	SAM binding site [chemical binding]; other site
713600001255	homodimer interface [polypeptide binding]; other site
713600001256	potential frameshift: common BLAST hit: gi|219682332|ref|YP_002468716.1| phosphoadenosine phosphosulfate reductase
713600001257	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]; Region: CysH; COG0175
713600001258	This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly...; Region: PAPS_reductase; cd01713
713600001259	Active Sites [active]
713600001260	sulfite reductase (NADPH) hemoprotein, beta-component; Region: CysI; TIGR02041
713600001261	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
713600001262	Nitrite/Sulfite reductase ferredoxin-like half domain; Region: NIR_SIR_ferr; pfam03460
713600001263	potential frameshift: common BLAST hit: gi|219681779|ref|YP_002468165.1| sulfite reductase (NADPH) flavoprotein alpha-component
713600001264	potential frameshift: common BLAST hit: gi|219681780|ref|YP_002468166.1| DNA mismatch repair protein
713600001265	DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019
713600001266	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
713600001267	catalytic residues [active]
713600001268	hinge region; other site
713600001269	alpha helical domain; other site
713600001270	5'-3' exonuclease; Provisional; Region: PRK14976
713600001271	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
713600001272	active site
713600001273	metal binding site 1 [ion binding]; metal-binding site
713600001274	putative 5' ssDNA interaction site; other site
713600001275	metal binding site 3; metal-binding site
713600001276	metal binding site 2 [ion binding]; metal-binding site
713600001277	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
713600001278	putative DNA binding site [nucleotide binding]; other site
713600001279	putative metal binding site [ion binding]; other site
713600001280	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
713600001281	G1 box; other site
713600001282	GTP/Mg2+ binding site [chemical binding]; other site
713600001283	Switch I region; other site
713600001284	G2 box; other site
713600001285	G3 box; other site
713600001286	Switch II region; other site
713600001287	G4 box; other site
713600001288	G5 box; other site
713600001289	potential frameshift: common BLAST hit: gi|219682339|ref|YP_002468723.1| GTP-binding protein BipA
713600001290	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
713600001291	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
713600001292	catalytic site [active]
713600001293	G-X2-G-X-G-K; other site
713600001294	putative global regulator; Reviewed; Region: PRK09559
713600001295	folate-binding protein YgfZ; Region: ygfZ_signature; TIGR03317
713600001296	peptide chain release factor 2; Validated; Region: prfB; PRK00578
713600001297	This domain is found in peptide chain release factors; Region: PCRF; smart00937
713600001298	RF-1 domain; Region: RF-1; pfam00472
713600001299	potential frameshift: common BLAST hit: gi|219682343|ref|YP_002468727.1| lysyl-tRNA synthetase
713600001300	potential frameshift: common BLAST hit: gi|219682344|ref|YP_002468728.1| diaminopimelate decarboxylase
713600001301	prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052
713600001302	thymidylate synthase; Reviewed; Region: thyA; PRK01827
713600001303	Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the...; Region: TS_Pyrimidine_HMase; cd00351
713600001304	dimerization interface [polypeptide binding]; other site
713600001305	active site
713600001306	potential frameshift: common BLAST hit: gi|219681792|ref|YP_002468178.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA)
713600001307	potential frameshift: common BLAST hit: gi|219682347|ref|YP_002468731.1| isopentenyl-adenosine A37 tRNA methylthiolase MiaB (YleA)
713600001308	Uncharacterized protein family UPF0054; Region: UPF0054; cl00402
713600001309	Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]; Region: CorC; COG4535
713600001310	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
713600001311	Transporter associated domain; Region: CorC_HlyC; smart01091
713600001312	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
713600001313	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
713600001314	HIGH motif; other site
713600001315	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
713600001316	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
713600001317	active site
713600001318	KMSKS motif; other site
713600001319	Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases; Region: Anticodon_Ia_Leu_BEm; cd07958
713600001320	tRNA binding surface [nucleotide binding]; other site
713600001321	potential frameshift: common BLAST hit: gi|219681796|ref|YP_002468182.1| DNA polymerase III delta subunit
713600001322	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
713600001323	nicotinate (nicotinamide) nucleotide adenylyltransferase; Region: TIGR00482
713600001324	active site
713600001325	(T/H)XGH motif; other site
713600001326	SirA (also known as UvrY,  and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA.  A...; Region: SirA; cd03423
713600001327	CPxP  motif; other site
713600001328	potential frameshift: common BLAST hit: gi|219681799|ref|YP_002468185.1| aspartate-semialdehyde dehydrogenase
713600001329	MarC family integral membrane protein; Region: MarC; cl00919
713600001330	potential frameshift: common BLAST hit: gi|219682356|ref|YP_002468740.1| phosphoglycerate kinase
713600001331	potential frameshift: common BLAST hit: gi|219682357|ref|YP_002468741.1| fructose-bisphosphate aldolase
713600001332	mechanosensitive channel MscS; Provisional; Region: PRK10334
713600001333	Conserved TM helix; Region: TM_helix; pfam05552
713600001334	Mechanosensitive ion channel; Region: MS_channel; pfam00924
713600001335	potential frameshift: common BLAST hit: gi|219681804|ref|YP_002468190.1| exodeoxyribonuclease V 125 kDa polypeptide
713600001336	potential frameshift: common BLAST hit: gi|219682359|ref|YP_002468743.1| exodeoxyribonuclease V 125 kDa polypeptide
713600001337	potential frameshift: common BLAST hit: gi|219681805|ref|YP_002468191.1| exodeoxyribonuclease V 135 kDa polypeptide
713600001338	potential frameshift: common BLAST hit: gi|15617053|ref|NP_240266.1| exodeoxyribonuclease V 135 kDa polypeptide
713600001339	exodeoxyribonuclease V, alpha subunit; Region: recD; TIGR01447
713600001340	AAA domain; Region: AAA_30; pfam13604
713600001341	Family description; Region: UvrD_C_2; pfam13538
713600001342	N-acetylglutamate synthase; Validated; Region: PRK05279
713600001343	AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an...; Region: AAK_NAGS-ABP; cd04237
713600001344	putative feedback inhibition sensing region; other site
713600001345	putative nucleotide binding site [chemical binding]; other site
713600001346	putative substrate binding site [chemical binding]; other site
713600001347	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
713600001348	Coenzyme A binding pocket [chemical binding]; other site
713600001349	potential frameshift: common BLAST hit: gi|219682363|ref|YP_002468747.1| membrane-bound lytic murein transglycosylase A precursor
713600001350	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
713600001351	homopentamer interface [polypeptide binding]; other site
713600001352	active site
713600001353	thiamine-monophosphate kinase; Region: thiL; TIGR01379
713600001354	ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the...; Region: ThiL; cd02194
713600001355	ATP binding site [chemical binding]; other site
713600001356	dimerization interface [polypeptide binding]; other site
713600001357	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
713600001358	catalytic motif [active]
713600001359	Zn binding site [ion binding]; other site
713600001360	Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]; Region: RibD; COG1985
713600001361	RibD C-terminal domain; Region: RibD_C; cl17279
713600001362	potential frameshift: common BLAST hit: gi|219682368|ref|YP_002468752.1| transcription antitermination protein NusB
713600001363	1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444
713600001364	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
713600001365	TPP-binding site; other site
713600001366	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
713600001367	PYR/PP interface [polypeptide binding]; other site
713600001368	dimer interface [polypeptide binding]; other site
713600001369	TPP binding site [chemical binding]; other site
713600001370	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
713600001371	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
713600001372	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
713600001373	substrate binding pocket [chemical binding]; other site
713600001374	chain length determination region; other site
713600001375	substrate-Mg2+ binding site; other site
713600001376	catalytic residues [active]
713600001377	aspartate-rich region 1; other site
713600001378	active site lid residues [active]
713600001379	aspartate-rich region 2; other site
713600001380	potential frameshift: common BLAST hit: gi|219682371|ref|YP_002468755.1| putative molybdenum cofactor-binding oxidoreductase (YagR)
713600001381	Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]; Region: DsrC; COG2920
713600001382	DsrC like protein; Region: DsrC; pfam04358
713600001383	protoheme IX farnesyltransferase; Region: cyoE_ctaB; TIGR01473
713600001384	UbiA prenyltransferase family; Region: UbiA; pfam01040
713600001385	cytochrome o ubiquinol oxidase subunit IV; Region: CyoD; TIGR02847
713600001386	Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane.  It catalyzes the reduction of O2 and simultaneously...; Region: Ubiquinol_oxidase_III; cd02863
713600001387	Subunit I/III interface [polypeptide binding]; other site
713600001388	Subunit III/IV interface [polypeptide binding]; other site
713600001389	potential frameshift: common BLAST hit: gi|15617069|ref|NP_240282.1| cytochrome O ubiquinol oxidase subunit I
713600001390	potential frameshift: common BLAST hit: gi|219682376|ref|YP_002468760.1| cytochrome O ubiquinol oxidase subunit I
713600001391	cytochrome o ubiquinol oxidase subunit II; Region: CyoA; TIGR01433
713600001392	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; pfam00116
713600001393	COX Aromatic Rich Motif; Region: COX_ARM; pfam06481
713600001394	Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]; Region: BolA; COG0271
713600001395	potential frameshift: common BLAST hit: gi|219681824|ref|YP_002468210.1| trigger factor
713600001396	Bacterial trigger factor protein (TF); Region: Trigger_N; pfam05697
713600001397	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
713600001398	Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: ClpP; COG0740
713600001399	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
713600001400	oligomer interface [polypeptide binding]; other site
713600001401	active site residues [active]
713600001402	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
713600001403	ClpX C4-type zinc finger; Region: zf-C4_ClpX; pfam06689
713600001404	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
713600001405	Walker A motif; other site
713600001406	ATP binding site [chemical binding]; other site
713600001407	Walker B motif; other site
713600001408	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; smart01086
713600001409	DNA-binding ATP-dependent protease La; Provisional; Region: PRK10787
713600001410	Found in ATP-dependent protease La (LON); Region: LON; smart00464
713600001411	Found in ATP-dependent protease La (LON); Region: LON; smart00464
713600001412	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
713600001413	Walker A motif; other site
713600001414	ATP binding site [chemical binding]; other site
713600001415	Walker B motif; other site
713600001416	arginine finger; other site
713600001417	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
713600001418	Lon protease (S16) C-terminal proteolytic domain; Region: Lon_C; pfam05362
713600001419	SurA N-terminal domain; Region: SurA_N_3; cl07813
713600001420	periplasmic folding chaperone; Provisional; Region: PRK10788
713600001421	PPIC-type PPIASE domain; Region: Rotamase; pfam00639
713600001422	potential frameshift: common BLAST hit: gi|219682384|ref|YP_002468768.1| multidrug resistance-like ATP-binding protein Mdl
713600001423	potential frameshift: common BLAST hit: gi|219682385|ref|YP_002468769.1| multidrug resistance-like ATP-binding protein MdlB
713600001424	DNA polymerase III subunits gamma and tau; Provisional; Region: PRK14961
713600001425	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
713600001426	Walker A motif; other site
713600001427	ATP binding site [chemical binding]; other site
713600001428	Walker B motif; other site
713600001429	arginine finger; other site
713600001430	DNA polymerase III subunits gamma and tau domain III; Region: DNA_pol3_gamma3; pfam12169
713600001431	hypothetical protein; Validated; Region: PRK00153
713600001432	potential frameshift: common BLAST hit: gi|219682388|ref|YP_002468772.1| heat shock protein 90
713600001433	adenylate kinase; Reviewed; Region: adk; PRK00279
713600001434	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
713600001435	AMP-binding site [chemical binding]; other site
713600001436	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
713600001437	potential frameshift: common BLAST hit: gi|219682390|ref|YP_002468774.1| methenyltetrahydrofolate cyclohydrolase
713600001438	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
713600001439	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
713600001440	active site
713600001441	HIGH motif; other site
713600001442	nucleotide binding site [chemical binding]; other site
713600001443	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
713600001444	KMSKS motif; other site
713600001445	Anticodon-binding domain of cysteinyl tRNA synthetases; Region: Anticodon_Ia_Cys; cd07963
713600001446	tRNA binding surface [nucleotide binding]; other site
713600001447	anticodon binding site; other site
713600001448	hypothetical protein; Provisional; Region: PRK04998
713600001449	Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea.  CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box...; Region: CSP_CDS; cd04458
713600001450	DNA-binding site [nucleotide binding]; DNA binding site
713600001451	RNA-binding motif; other site
713600001452	shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258
713600001453	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
713600001454	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
713600001455	shikimate binding site; other site
713600001456	NAD(P) binding site [chemical binding]; other site
713600001457	Telomere recombination; Region: Sua5_yciO_yrdC; cl00305
713600001458	Uncharacterized protein conserved in bacteria [Function unknown]; Region: Smg; COG2922
713600001459	potential frameshift: common BLAST hit: gi|219682397|ref|YP_002468781.1| polypeptide deformylase
713600001460	Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]; Region: Fmt; COG0223
713600001461	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
713600001462	putative active site [active]
713600001463	substrate binding site [chemical binding]; other site
713600001464	putative cosubstrate binding site; other site
713600001465	catalytic site [active]
713600001466	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
713600001467	substrate binding site [chemical binding]; other site
713600001468	Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]; Region: RplQ; COG0203
713600001469	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
713600001470	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
713600001471	alphaNTD homodimer interface [polypeptide binding]; other site
713600001472	alphaNTD - beta interaction site [polypeptide binding]; other site
713600001473	alphaNTD - beta' interaction site [polypeptide binding]; other site
713600001474	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; pfam03118
713600001475	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
713600001476	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
713600001477	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
713600001478	RNA binding surface [nucleotide binding]; other site
713600001479	30S ribosomal protein S11; Validated; Region: PRK05309
713600001480	30S ribosomal protein S13; Validated; Region: rpsM; PRK05179
713600001481	30S ribosomal protein S13; Region: bact_S13; TIGR03631
713600001482	50S ribosomal protein L36; Reviewed; Region: rpmJ; PRK00465
713600001483	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
713600001484	SecY translocase; Region: SecY; pfam00344
713600001485	potential frameshift: common BLAST hit: gi|219682406|ref|YP_002468790.1| 50S ribosomal protein L15
713600001486	Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that...; Region: Ribosomal_L30; cd01658
713600001487	23S rRNA binding site [nucleotide binding]; other site
713600001488	30S ribosomal protein S5; Validated; Region: rpsE; PRK00550
713600001489	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
713600001490	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
713600001491	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
713600001492	5S rRNA interface [nucleotide binding]; other site
713600001493	23S rRNA interface [nucleotide binding]; other site
713600001494	L5 interface [polypeptide binding]; other site
713600001495	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
713600001496	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
713600001497	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
713600001498	30S ribosomal protein S8; Validated; Region: rpsH; PRK00136
713600001499	30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881
713600001500	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
713600001501	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
713600001502	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
713600001503	50S ribosomal protein L24; Reviewed; Region: rplX; PRK00004
713600001504	KOW motif of Ribosomal Protein L26; Region: KOW_RPL26; cd06089
713600001505	RNA binding site [nucleotide binding]; other site
713600001506	50S ribosomal protein L14; Validated; Region: rplN; PRK05483
713600001507	30S ribosomal protein S17; Reviewed; Region: rpsQ; PRK05610
713600001508	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
713600001509	23S rRNA interface [nucleotide binding]; other site
713600001510	putative translocon interaction site; other site
713600001511	signal recognition particle (SRP54) interaction site; other site
713600001512	L23 interface [polypeptide binding]; other site
713600001513	trigger factor interaction site; other site
713600001514	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
713600001515	23S rRNA interface [nucleotide binding]; other site
713600001516	5S rRNA interface [nucleotide binding]; other site
713600001517	putative antibiotic binding site [chemical binding]; other site
713600001518	L25 interface [polypeptide binding]; other site
713600001519	L27 interface [polypeptide binding]; other site
713600001520	potential frameshift: common BLAST hit: gi|219682419|ref|YP_002468803.1| 30S ribosomal protein S3
713600001521	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
713600001522	protein-rRNA interface [nucleotide binding]; other site
713600001523	putative translocon binding site; other site
713600001524	30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357
713600001525	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
713600001526	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
713600001527	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
713600001528	50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738
713600001529	50S ribosomal protein L4; Provisional; Region: rplD; PRK05319
713600001530	50S ribosomal protein L3, bacterial; Region: L3_bact; TIGR03625
713600001531	30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596
713600001532	elongation factor Tu; Reviewed; Region: PRK00049
713600001533	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
713600001534	G1 box; other site
713600001535	GEF interaction site [polypeptide binding]; other site
713600001536	GTP/Mg2+ binding site [chemical binding]; other site
713600001537	Switch I region; other site
713600001538	G2 box; other site
713600001539	G3 box; other site
713600001540	Switch II region; other site
713600001541	G4 box; other site
713600001542	G5 box; other site
713600001543	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
713600001544	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
713600001545	Antibiotic Binding Site [chemical binding]; other site
713600001546	potential frameshift: common BLAST hit: gi|219682428|ref|YP_002468812.1| elongation factor G
713600001547	potential frameshift: common BLAST hit: gi|219682428|ref|YP_002468812.1| elongation factor G
713600001548	30S ribosomal protein S7; Validated; Region: PRK05302
713600001549	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
713600001550	S17 interaction site [polypeptide binding]; other site
713600001551	S8 interaction site; other site
713600001552	16S rRNA interaction site [nucleotide binding]; other site
713600001553	streptomycin interaction site [chemical binding]; other site
713600001554	23S rRNA interaction site [nucleotide binding]; other site
713600001555	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
713600001556	sulfur transfer complex subunit TusB; Provisional; Region: PRK13510
713600001557	sulfur relay protein TusC; Validated; Region: PRK00211
713600001558	sulfur transfer complex subunit TusD; Validated; Region: PRK00207
713600001559	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Region: FKBP_N; pfam01346
713600001560	FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]; Region: FkpA; COG0545
713600001561	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; pfam00254
713600001562	potential frameshift: common BLAST hit: gi|219682435|ref|YP_002468819.1| bifunctional
713600001563	putative transporter; Provisional; Region: PRK03699
713600001564	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
713600001565	putative substrate translocation pore; other site
713600001566	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
713600001567	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
713600001568	active site
713600001569	HIGH motif; other site
713600001570	dimer interface [polypeptide binding]; other site
713600001571	KMSKS motif; other site
713600001572	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
713600001573	ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163
713600001574	substrate binding site [chemical binding]; other site
713600001575	hexamer interface [polypeptide binding]; other site
713600001576	metal binding site [ion binding]; metal-binding site
713600001577	potential frameshift: common BLAST hit: gi|219682439|ref|YP_002468823.1| 3-dehydroquinate synthase
713600001578	shikimate kinase; Reviewed; Region: aroK; PRK00131
713600001579	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
713600001580	ADP binding site [chemical binding]; other site
713600001581	magnesium binding site [ion binding]; other site
713600001582	putative shikimate binding site; other site
713600001583	purine nucleoside phosphorylase; Reviewed; Region: deoD; PRK05819
713600001584	potential frameshift: common BLAST hit: gi|15617135|ref|NP_240348.1| phosphopentomutase
713600001585	potential frameshift: common BLAST hit: gi|219681888|ref|YP_002468274.1| peptide chain release factor 3
713600001586	Fe/S biogenesis protein NfuA; Provisional; Region: PRK11190
713600001587	Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]; Region: sufA; COG0316
713600001588	Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]; Region: COG0694
713600001589	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
713600001590	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
713600001591	dimer interface [polypeptide binding]; other site
713600001592	ssDNA binding site [nucleotide binding]; other site
713600001593	tetramer (dimer of dimers) interface [polypeptide binding]; other site
713600001594	replicative DNA helicase; Provisional; Region: PRK08006
713600001595	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
713600001596	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
713600001597	Walker A motif; other site
713600001598	ATP binding site [chemical binding]; other site
713600001599	Walker B motif; other site
713600001600	DNA binding loops [nucleotide binding]
713600001601	glutathione synthetase; Provisional; Region: PRK05246
713600001602	Prokaryotic glutathione synthetase, N-terminal domain; Region: GSH-S_N; pfam02951
713600001603	Prokaryotic glutathione synthetase, ATP-grasp domain; Region: GSH-S_ATP; pfam02955
713600001604	Holliday junction resolvase-like protein; Reviewed; Region: PRK00109
713600001605	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
713600001606	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
713600001607	catalytic residue [active]
713600001608	HemN family oxidoreductase; Provisional; Region: PRK05660
713600001609	HemN C-terminal domain; Region: HemN_C; pfam06969
713600001610	Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]; Region: COG0220
713600001611	A/G-specific DNA glycosylase [DNA replication, recombination, and repair]; Region: MutY; COG1194
713600001612	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
713600001613	minor groove reading motif; other site
713600001614	helix-hairpin-helix signature motif; other site
713600001615	substrate binding pocket [chemical binding]; other site
713600001616	active site
713600001617	iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3); Region: FES; smart00525
713600001618	DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important...; Region: DNA_Glycosylase_C; cd03431
713600001619	DNA binding and oxoG recognition site [nucleotide binding]
713600001620	Bacterial Fe(2+) trafficking; Region: Iron_traffic; cl01104
713600001621	Glutamate racemase [Cell envelope biogenesis, outer membrane]; Region: MurI; COG0796
713600001622	potential frameshift: common BLAST hit: gi|15617148|ref|NP_240361.1| exonuclease I
713600001623	hypothetical protein; Provisional; Region: PRK05423
713600001624	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
713600001625	active site
713600001626	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
713600001627	trimer interface [polypeptide binding]; other site
713600001628	active site
713600001629	potential frameshift: common BLAST hit: gi|219682458|ref|YP_002468842.1| CysQ protein
713600001630	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
713600001631	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
713600001632	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
713600001633	30S ribosomal protein S18; Reviewed; Region: rpsR; PRK00391
713600001634	30S ribosomal protein S6; Reviewed; Region: rpsF; PRK00453
713600001635	potential frameshift: common BLAST hit: gi|219681907|ref|YP_002468293.1| VacB protein
713600001636	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
713600001637	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
713600001638	GDP-binding site [chemical binding]; other site
713600001639	ACT binding site; other site
713600001640	IMP binding site; other site
713600001641	FtsH protease regulator HflC; Provisional; Region: PRK11029
713600001642	Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflC; cd03405
713600001643	Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma...; Region: Band_7_HflK; cd03404
713600001644	HflK protein; Region: hflK; TIGR01933
713600001645	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
713600001646	tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed; Region: miaA; PRK00091
713600001647	potential frameshift: common BLAST hit: gi|219681912|ref|YP_002468298.1| DNA mismatch repair protein MutL
713600001648	mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318
713600001649	Mannitol dehydrogenase Rossmann domain; Region: Mannitol_dh; pfam01232
713600001650	Mannitol dehydrogenase C-terminal domain; Region: Mannitol_dh_C; pfam08125
713600001651	potential frameshift: common BLAST hit: gi|219681914|ref|YP_002468300.1| PTS system mannitol-specific IIABC component
713600001652	potential frameshift: common BLAST hit: gi|219682469|ref|YP_002468853.1| PTS system mannitol-specific IIABC component
713600001653	glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179
713600001654	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
713600001655	active site
713600001656	dimer interface [polypeptide binding]; other site
713600001657	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
713600001658	dimer interface [polypeptide binding]; other site
713600001659	active site
713600001660	DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins; Region: Orn; cd06135
713600001661	catalytic site [active]
713600001662	putative active site [active]
713600001663	putative substrate binding site [chemical binding]; other site
713600001664	dimer interface [polypeptide binding]; other site
713600001665	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
713600001666	active site
713600001667	metal binding site [ion binding]; metal-binding site
713600001668	50S ribosomal protein L31; Reviewed; Region: rpmE; PRK00019
713600001669	Sporulation related domain; Region: SPOR; cl10051
713600001670	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
713600001671	active site
713600001672	HslU subunit interaction site [polypeptide binding]; other site
713600001673	potential frameshift: common BLAST hit: gi|219682475|ref|YP_002468859.1| ATP-dependent protease ATP-binding subunit
713600001674	Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: IbpA; COG0071
713600001675	Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins.  IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470
713600001676	putative dimer interface [polypeptide binding]; other site
713600001677	ferredoxin-NADP reductase; Provisional; Region: PRK10926
713600001678	Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently...; Region: FNR1; cd06195
713600001679	FAD binding pocket [chemical binding]; other site
713600001680	FAD binding motif [chemical binding]; other site
713600001681	phosphate binding motif [ion binding]; other site
713600001682	beta-alpha-beta structure motif; other site
713600001683	NAD binding pocket [chemical binding]; other site
713600001684	Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]; Region: COG2269
713600001685	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it...; Region: class_II_aaRS-like_core; cl00268
713600001686	motif 1; other site
713600001687	dimer interface [polypeptide binding]; other site
713600001688	active site
713600001689	motif 2; other site
713600001690	motif 3; other site
713600001691	Phosphopantetheine adenylyltransferase [Coenzyme metabolism]; Region: CoaD; COG0669
713600001692	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
713600001693	active site
713600001694	(T/H)XGH motif; other site
713600001695	potential frameshift: common BLAST hit: gi|219682482|ref|YP_002468866.1| predicted SAM-dependent methyltransferase (YhiQ)
713600001696	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
713600001697	Phosphate/sulphate permeases [Inorganic ion transport and metabolism]; Region: PitA; COG0306
713600001698	potential frameshift: common BLAST hit: gi|27905003|ref|NP_778129.1| putative transport protein
713600001699	Diaminopimelate epimerase [Amino acid transport and metabolism]; Region: DapF; COG0253
713600001700	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
713600001701	Diaminopimelate epimerase; Region: DAP_epimerase; pfam01678
713600001702	Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate...; Region: Frataxin; cd00503
713600001703	putative iron binding site [ion binding]; other site
713600001704	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
713600001705	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494
713600001706	domain interfaces; other site
713600001707	active site
713600001708	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
713600001709	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
713600001710	active site
713600001711	potential frameshift: common BLAST hit: gi|219682487|ref|YP_002468871.1| transcription termination factor Rho
713600001712	ATP-dependent DNA helicase Rep; Region: rep; TIGR01074
713600001713	Part of AAA domain; Region: AAA_19; pfam13245
713600001714	Family description; Region: UvrD_C_2; pfam13538
713600001715	ketol-acid reductoisomerase; Validated; Region: PRK05225
713600001716	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvN; pfam07991
713600001717	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
713600001718	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
713600001719	potential frameshift: common BLAST hit: gi|219682491|ref|YP_002468875.1| dihydroxy-acid dehydratase
713600001720	cysteine desulfurase; Provisional; Region: PRK14012
713600001721	cysteine desulfurase NifS; Region: FeS_nifS; TIGR03402
713600001722	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
713600001723	catalytic residue [active]
713600001724	NifU homolog involved in Fe-S cluster formation [Energy production and conversion]; Region: IscU; COG0822
713600001725	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
713600001726	trimerization site [polypeptide binding]; other site
713600001727	active site
713600001728	DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]; Region: DjlA; COG1076
713600001729	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cl02542
713600001730	potential frameshift: common BLAST hit: gi|219682495|ref|YP_002468879.1| heat shock protein HscA
713600001731	Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633
713600001732	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
713600001733	catalytic loop [active]
713600001734	iron binding site [ion binding]; other site
713600001735	ribosome-associated GTPase EngA; Region: GTPase_EngA; TIGR03594
713600001736	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
713600001737	G1 box; other site
713600001738	GTP/Mg2+ binding site [chemical binding]; other site
713600001739	Switch I region; other site
713600001740	G2 box; other site
713600001741	Switch II region; other site
713600001742	G3 box; other site
713600001743	G4 box; other site
713600001744	G5 box; other site
713600001745	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
713600001746	G1 box; other site
713600001747	GTP/Mg2+ binding site [chemical binding]; other site
713600001748	Switch I region; other site
713600001749	G2 box; other site
713600001750	G3 box; other site
713600001751	Switch II region; other site
713600001752	G4 box; other site
713600001753	G5 box; other site
713600001754	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2976