-- dump date 20120504_140043 -- class Genbank::CDS -- table cds_note -- id note YP_001064286.1 ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity YP_001064287.1 identified by match to protein family HMM PF00999 YP_001064288.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_001064289.1 identified by match to protein family HMM PF00216 YP_001064290.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_001064291.1 identified by match to protein family HMM PF01464 YP_001064292.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517 YP_001064293.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533 YP_001064294.1 identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 YP_001064297.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532 YP_001064298.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532 YP_001064299.1 identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532 YP_001064300.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001064301.1 identified by match to protein family HMM PF03934 YP_001064302.1 identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709 YP_001064303.1 identified by match to protein family HMM PF04612 YP_001064305.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001064307.1 identified by match to protein family HMM PF01047 YP_001064308.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001064309.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064310.1 identified by match to protein family HMM PF03788 YP_001064311.1 identified by match to protein family HMM PF04172 YP_001064313.1 interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001064314.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_001064315.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480 YP_001064316.1 identified by match to protein family HMM PF04347 YP_001064317.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001064318.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_001064319.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400 YP_001064320.1 identified by match to protein family HMM PF00376 YP_001064321.1 identified by match to protein family HMM PF05175 YP_001064324.1 identified by match to protein family HMM PF00005 YP_001064325.1 identified by match to protein family HMM PF00528 YP_001064326.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001064327.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001064331.1 identified by match to protein family HMM PF01555 YP_001064332.1 identified by match to protein family HMM PF04851 YP_001064335.1 identified by match to protein family HMM PF00165 YP_001064336.1 identified by match to protein family HMM PF00005 YP_001064338.1 identified by match to protein family HMM PF00005 YP_001064339.1 identified by match to protein family HMM PF02653 YP_001064340.1 identified by match to protein family HMM PF02653 YP_001064342.1 identified by match to protein family HMM PF00171 YP_001064345.1 identified by match to protein family HMM PF00106 YP_001064346.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001064347.1 identified by match to protein family HMM PF03551 YP_001064351.1 identified by match to protein family HMM PF00487 YP_001064352.1 identified by match to protein family HMM PF07848; match to protein family HMM PF08223 YP_001064353.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001064354.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001064357.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001064358.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001064360.1 identified by match to protein family HMM PF02515 YP_001064369.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001064370.1 identified by match to protein family HMM PF00199 YP_001064371.1 identified by match to protein family HMM PF01292 YP_001064374.1 identified by match to protein family HMM PF01527 YP_001064376.1 identified by match to protein family HMM PF01527 YP_001064377.1 identified by match to protein family HMM PF00665 YP_001064380.1 identified by match to protein family HMM PF01381 YP_001064381.1 identified by match to protein family HMM PF06114 YP_001064382.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 YP_001064384.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_001064385.2 identified by match to protein family HMM PF01863 YP_001064386.1 negatively supercoils closed circular double-stranded DNA YP_001064387.1 binds the polymerase to DNA and acts as a sliding clamp YP_001064388.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001064389.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001064391.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_001064392.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001064396.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001064397.1 identified by match to protein family HMM PF00589 YP_001064406.1 identified by match to protein family HMM PF00665 YP_001064407.1 identified by match to protein family HMM PF01527 YP_001064411.1 identified by match to protein family HMM PF00583 YP_001064415.1 identified by match to protein family HMM PF07152 YP_001064416.1 identified by match to protein family HMM PF00903 YP_001064417.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_001064418.1 identified by match to protein family HMM PF00730; match to protein family HMM PF06029 YP_001064419.1 involved in the first step of glutathione biosynthesis YP_001064420.1 identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001064424.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064425.1 identified by match to protein family HMM PF01547 YP_001064426.1 identified by match to protein family HMM PF00850 YP_001064427.1 identified by match to protein family HMM PF00795 YP_001064430.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540 YP_001064431.1 identified by match to protein family HMM TIGR02684 YP_001064433.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001064434.1 identified by match to protein family HMM PF01734 YP_001064436.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001064437.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064439.1 decatenates replicating daughter chromosomes YP_001064440.1 identified by match to protein family HMM PF00085 YP_001064441.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001064443.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001064444.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001064446.1 identified by match to protein family HMM PF01810 YP_001064447.1 identified by match to protein family HMM PF01435 YP_001064449.1 identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001064451.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001064452.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_001064454.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_001064456.1 identified by match to protein family HMM PF01242 YP_001064458.1 identified by match to protein family HMM PF03328 YP_001064460.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210 YP_001064461.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001064462.1 identified by match to protein family HMM PF04093 YP_001064463.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001064464.1 functions in MreBCD complex in some organisms YP_001064465.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001064466.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001064467.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001064468.1 identified by match to protein family HMM PF03976 YP_001064469.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001064470.1 identified by match to protein family HMM PF00107 YP_001064471.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_001064472.1 identified by match to protein family HMM PF01435 YP_001064473.1 identified by match to protein family HMM PF07690 YP_001064474.1 identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081 YP_001064475.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_001064476.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_001064477.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993 YP_001064478.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001064481.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001064482.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02954 YP_001064483.1 heat shock protein involved in degradation of misfolded proteins YP_001064484.2 heat shock protein involved in degradation of misfolded proteins YP_001064486.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420 YP_001064488.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_001064490.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001064491.1 identified by match to protein family HMM PF04340 YP_001064492.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001064493.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_001064494.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001064496.1 identified by match to protein family HMM PF05721 YP_001064499.1 identified by match to protein family HMM PF00248 YP_001064501.1 identified by match to protein family HMM PF00892 YP_001064503.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001064507.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_001064509.1 identified by match to protein family HMM PF00171 YP_001064510.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001064511.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001064512.1 identified by match to protein family HMM PF02120 YP_001064513.1 identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473 YP_001064514.1 identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545 YP_001064515.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001064516.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001064517.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001064518.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_001064519.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001064523.1 identified by match to protein family HMM PF03929 YP_001064524.1 identified by match to protein family HMM PF02625 YP_001064525.1 identified by match to protein family HMM PF00324 YP_001064526.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001064527.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001064528.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001064529.1 identified by match to protein family HMM PF01810 YP_001064530.1 identified by match to protein family HMM PF03372 YP_001064533.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001064534.1 identified by match to protein family HMM PF01266 YP_001064535.1 identified by match to protein family HMM PF01355 YP_001064536.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001064539.1 identified by match to protein family HMM PF00496 YP_001064540.1 identified by match to protein family HMM PF00528 YP_001064541.1 identified by match to protein family HMM PF00528 YP_001064542.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001064543.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides YP_001064544.1 identified by match to protein family HMM PF07446 YP_001064545.1 identified by match to protein family HMM PF06166 YP_001064546.1 identified by match to protein family HMM PF06149 YP_001064547.1 identified by match to protein family HMM PF03746 YP_001064548.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_001064549.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_001064550.1 identified by match to protein family HMM PF01047 YP_001064551.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001064552.1 identified by match to protein family HMM PF01464 YP_001064553.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_001064554.1 identified by match to protein family HMM PF02798 YP_001064555.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_001064558.1 identified by match to protein family HMM PF05130 YP_001064559.1 identified by match to protein family HMM PF04316 YP_001064560.1 required for the assembly of the flagellar basal body P-ring YP_001064561.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001064562.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001064563.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production YP_001064564.1 the hook connects flagellar basal body to the flagellar filament YP_001064565.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod YP_001064566.1 makes up the distal portion of the flagellar basal body rod YP_001064567.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes YP_001064568.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_001064569.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space YP_001064570.1 identified by match to protein family HMM PF07238; match to protein family HMM PF07317 YP_001064571.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001064572.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes. YP_001064574.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001064576.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_001064577.1 identified by match to protein family HMM PF02417 YP_001064578.1 identified by match to protein family HMM PF02417 YP_001064581.1 identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686 YP_001064582.1 identified by match to protein family HMM PF06912 YP_001064585.1 identified by match to protein family HMM PF00267 YP_001064592.1 identified by match to protein family HMM PF04966 YP_001064596.1 identified by match to protein family HMM PF01566 YP_001064600.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424 YP_001064602.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_001064605.1 identified by match to protein family HMM PF00403 YP_001064607.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001064609.1 identified by match to protein family HMM PF04011 YP_001064610.1 identified by match to protein family HMM PF04536 YP_001064611.1 identified by match to protein family HMM PF04536 YP_001064613.1 identified by match to protein family HMM PF02321 YP_001064614.1 identified by match to protein family HMM TIGR01730 YP_001064615.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_001064618.1 identified by match to protein family HMM PF01382 YP_001064619.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001064621.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF01128; match to protein family HMM TIGR01173 YP_001064623.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_001064626.1 identified by match to protein family HMM PF02636 YP_001064630.1 identified by match to protein family HMM PF00294 YP_001064631.1 identified by match to protein family HMM PF07221 YP_001064632.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001064633.1 identified by match to protein family HMM PF00015 YP_001064635.1 identified by match to protein family HMM PF01758 YP_001064638.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001064639.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064640.1 identified by match to protein family HMM PF03060 YP_001064642.1 identified by match to protein family HMM PF00561 YP_001064643.1 identified by match to protein family HMM PF01037 YP_001064644.1 identified by match to protein family HMM PF00892 YP_001064646.1 identified by match to protein family HMM PF01610 YP_001064647.2 identified by match to protein family HMM PF06945 YP_001064649.1 identified by match to protein family HMM PF04073 YP_001064650.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_001064651.1 identified by match to protein family HMM PF02826 YP_001064652.1 identified by match to protein family HMM PF00903 YP_001064653.1 identified by match to protein family HMM PF06821 YP_001064654.1 identified by match to protein family HMM PF00293 YP_001064655.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_001064657.1 identified by match to protein family HMM PF01037 YP_001064658.1 identified by match to protein family HMM PF03591 YP_001064659.1 identified by match to protein family HMM PF05437 YP_001064660.1 identified by match to protein family HMM PF00561 YP_001064661.1 identified by match to protein family HMM PF02630 YP_001064662.1 identified by match to protein family HMM PF01344; match to protein family HMM PF07646 YP_001064665.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_001064672.1 identified by match to protein family HMM PF02954 YP_001064674.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_001064676.1 identified by match to protein family HMM PF00450 YP_001064678.1 identified by match to protein family HMM PF01007; match to protein family HMM PF07885 YP_001064680.1 catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001064682.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_001064683.1 identified by match to protein family HMM PF00563 YP_001064687.1 identified by match to protein family HMM PF00245 YP_001064688.1 identified by match to protein family HMM PF00245 YP_001064691.1 identified by match to protein family HMM PF03932 YP_001064692.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001064693.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001064694.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_001064695.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_001064699.1 identified by match to protein family HMM PF00106 YP_001064700.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001064701.1 identified by match to protein family HMM PF00484 YP_001064702.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol YP_001064703.1 identified by match to protein family HMM PF00753 YP_001064704.1 identified by match to protein family HMM PF00005 YP_001064705.1 identified by match to protein family HMM PF00496 YP_001064706.1 identified by match to protein family HMM PF00108 YP_001064707.1 identified by match to protein family HMM PF01047 YP_001064709.1 identified by match to protein family HMM PF00106 YP_001064710.1 identified by match to protein family HMM PF00106 YP_001064711.1 identified by match to protein family HMM PF01323 YP_001064712.1 identified by match to protein family HMM PF05036 YP_001064713.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001064716.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_001064717.1 identified by match to protein family HMM PF02574 YP_001064720.1 identified by match to protein family HMM PF01614 YP_001064721.1 identified by match to protein family HMM PF01557 YP_001064722.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001064724.1 identified by match to protein family HMM PF01734 YP_001064727.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199 YP_001064729.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001064730.2 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_001064732.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001064733.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_001064734.1 identified by match to protein family HMM PF00005 YP_001064735.1 identified by match to protein family HMM PF02470 YP_001064737.1 identified by match to protein family HMM PF04892 YP_001064741.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001064742.1 identified by match to protein family HMM PF01063 YP_001064743.1 identified by match to protein family HMM PF04359 YP_001064744.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_001064746.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_001064747.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001064750.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_001064752.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064753.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001064754.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001064755.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001064756.1 identified by match to protein family HMM PF02515 YP_001064757.1 identified by match to protein family HMM PF04341 YP_001064758.1 member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake YP_001064759.1 involved in the transport of C4-dicarboxylates across the membrane YP_001064760.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001064761.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001064764.1 identified by match to protein family HMM PF00975 YP_001064766.1 identified by match to protein family HMM PF00583 YP_001064768.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_001064769.1 identified by match to protein family HMM PF04380 YP_001064770.1 identified by match to protein family HMM PF00543 YP_001064771.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_001064772.1 identified by match to protein family HMM TIGR02049 YP_001064773.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001064774.1 identified by match to protein family HMM PF03610 YP_001064775.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001064776.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001064778.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237 YP_001064779.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001064780.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001064781.1 identified by match to protein family HMM PF00581 YP_001064782.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181 YP_001064783.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_001064784.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001064785.1 identified by match to protein family HMM PF01661 YP_001064786.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_001064790.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_001064791.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_001064793.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_001064795.1 identified by match to protein family HMM PF00510 YP_001064799.1 identified by match to protein family HMM PF02628 YP_001064800.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001064801.1 identified by match to protein family HMM PF02630 YP_001064802.1 identified by match to protein family HMM PF03795 YP_001064803.1 identified by match to protein family HMM PF00015 YP_001064804.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001064805.1 identified by match to protein family HMM PF04392 YP_001064806.1 identified by match to protein family HMM PF02653 YP_001064807.1 identified by match to protein family HMM PF00005 YP_001064810.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase. YP_001064812.1 identified by match to protein family HMM PF07690 YP_001064814.1 identified by match to protein family HMM PF00487 YP_001064815.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709 YP_001064817.1 identified by match to protein family HMM PF01061 YP_001064818.1 identified by match to protein family HMM PF00005 YP_001064819.1 identified by match to protein family HMM PF02668 YP_001064820.1 identified by match to protein family HMM PF01209 YP_001064821.1 identified by match to protein family HMM PF00285 YP_001064822.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001064824.1 identified by match to protein family HMM PF00501 YP_001064825.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_001064832.1 identified by match to protein family HMM PF00501 YP_001064833.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001064834.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001064835.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001064836.1 identified by match to protein family HMM PF01380 YP_001064837.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417 YP_001064838.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001064839.1 identified by match to protein family HMM PF00728; match to protein family HMM PF03173 YP_001064842.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_001064843.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001064844.1 identified by match to protein family HMM PF01654 YP_001064846.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_001064849.1 identified by match to protein family HMM TIGR02246 YP_001064850.1 identified by match to protein family HMM PF00682 YP_001064852.1 identified by match to protein family HMM PF00583 YP_001064853.1 identified by match to protein family HMM PF02885 YP_001064854.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879 YP_001064855.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_001064856.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_001064858.1 identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262 YP_001064860.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001064861.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001064863.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001064864.1 identified by match to protein family HMM PF00037 YP_001064865.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001064866.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001064867.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001064868.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001064869.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001064870.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_001064871.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07721 YP_001064872.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001064873.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_001064874.1 identified by match to protein family HMM PF02190 YP_001064875.1 identified by match to protein family HMM PF03668 YP_001064876.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001064877.1 identified by match to protein family HMM PF00359 YP_001064878.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001064879.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001064880.1 identified by match to protein family HMM PF00005 YP_001064881.1 identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002 YP_001064882.1 identified by match to protein family HMM PF06835 YP_001064883.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_001064884.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_001064885.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001064886.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001064887.1 identified by match to protein family HMM PF01810 YP_001064888.1 identified by match to protein family HMM PF00293 YP_001064889.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001064891.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_001064892.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001064893.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001064894.1 identified by match to protein family HMM PF01738 YP_001064902.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001064904.1 identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001064915.1 identified by match to protein family HMM PF00498 YP_001064916.1 identified by match to protein family HMM PF00069 YP_001064919.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702 YP_001064920.1 identified by match to protein family HMM PF00596 YP_001064923.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001064924.1 identified by match to protein family HMM PF01943 YP_001064925.1 identified by match to protein family HMM PF00534 YP_001064926.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001064929.1 identified by match to protein family HMM PF00534 YP_001064930.1 identified by match to protein family HMM PF01569 YP_001064932.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001064934.1 identified by match to protein family HMM PF00703 YP_001064937.1 identified by match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001064938.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_001064939.1 identified by match to protein family HMM PF00027 YP_001064942.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001064943.1 identified by match to protein family HMM PF02563 YP_001064944.1 identified by match to protein family HMM PF00534 YP_001064945.1 identified by match to protein family HMM TIGR03304 YP_001064948.1 identified by match to protein family HMM PF07452 YP_001064949.1 identified by match to protein family HMM PF07859 YP_001064951.1 identified by match to protein family HMM PF07690 YP_001064952.1 identified by match to protein family HMM PF01047 YP_001064953.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_001064955.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001064956.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969 YP_001064957.1 identified by match to protein family HMM PF01042 YP_001064958.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_001064959.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_001064962.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913 YP_001064963.1 identified by match to protein family HMM PF01230 YP_001064964.1 identified by match to protein family HMM PF06155 YP_001064965.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_001064966.1 identified by match to protein family HMM PF04280 YP_001064967.1 identified by match to protein family HMM PF06843 YP_001064968.1 an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions YP_001064970.1 identified by match to protein family HMM PF05724 YP_001064971.1 identified by match to protein family HMM TIGR02605 YP_001064972.1 identified by match to protein family HMM PF04367 YP_001064973.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001064974.1 converts dATP to dAMP and pyrophosphate YP_001064975.1 identified by match to protein family HMM PF00614 YP_001064977.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001064978.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001064979.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001064980.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001064981.1 identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129 YP_001064982.1 identified by match to protein family HMM TIGR02664 YP_001064983.1 identified by match to protein family HMM PF03061 YP_001064984.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001064986.1 identified by match to protein family HMM PF00483 YP_001064987.1 identified by match to protein family HMM PF01636 YP_001064988.1 identified by match to protein family HMM PF04453 YP_001064989.2 identified by match to protein family HMM PF00639 YP_001064990.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_001064991.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001064992.1 identified by match to protein family HMM PF00892 YP_001064993.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068 YP_001064995.1 identified by match to protein family HMM PF01863 YP_001064996.1 identified by match to protein family HMM PF01553 YP_001064997.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_001064998.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001064999.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001065000.1 Transfers the fatty acyl group on membrane lipoproteins YP_001065001.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03471 YP_001065002.1 identified by match to protein family HMM PF04752 YP_001065003.2 contains unknown N-terminal domain/ metalloprotease C-terminal domain YP_001065005.1 identified by match to protein family HMM PF02562 YP_001065006.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001065008.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065009.1 identified by match to protein family HMM PF07690 YP_001065010.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001065011.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506 YP_001065012.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001065013.1 identified by match to protein family HMM PF00892 YP_001065014.1 identified by match to protein family HMM PF02655 YP_001065015.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR01536 YP_001065016.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001065018.1 identified by match to protein family HMM PF01042 YP_001065020.1 identified by match to protein family HMM PF00230 YP_001065021.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001065022.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_001065025.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001065026.1 identified by match to protein family HMM PF01019 YP_001065030.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001065031.1 identified by match to protein family HMM PF00034 YP_001065033.1 identified by match to protein family HMM PF05425 YP_001065034.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001065035.1 identified by match to protein family HMM PF04828 YP_001065037.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_001065038.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707 YP_001065039.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966 YP_001065042.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM TIGR00229 YP_001065044.1 identified by match to protein family HMM PF01565 YP_001065046.1 identified by match to protein family HMM PF03466 YP_001065047.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA YP_001065051.1 identified by match to protein family HMM PF00005 YP_001065052.1 identified by match to protein family HMM PF00528 YP_001065057.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001065059.1 identified by match to protein family HMM PF00156 YP_001065060.1 identified by match to protein family HMM PF00912 YP_001065062.1 identified by match to protein family HMM PF00034 YP_001065064.1 identified by match to protein family HMM PF00115; match to protein family HMM PF00510; match to protein family HMM TIGR02891 YP_001065065.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM TIGR02866 YP_001065066.1 catalyzes the formation of acetate from pyruvate YP_001065067.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001065070.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001065071.1 identified by match to protein family HMM PF05947 YP_001065074.1 identified by match to protein family HMM PF01804 YP_001065075.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065076.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001065077.1 identified by match to protein family HMM PF00174 YP_001065078.1 identified by match to protein family HMM PF00072 YP_001065090.1 identified by match to protein family HMM PF00589 YP_001065092.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065093.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001065094.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065095.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001065096.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001065098.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001065099.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001065100.1 identified by match to protein family HMM PF03741 YP_001065101.2 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001065102.1 identified by match to protein family HMM PF04932 YP_001065106.1 identified by match to protein family HMM TIGR01352 YP_001065107.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001065108.1 identified by match to protein family HMM PF01435 YP_001065111.1 identified by match to protein family HMM PF00561 YP_001065113.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195 YP_001065115.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001065116.1 identified by match to protein family HMM PF03591 YP_001065117.1 identified by match to protein family HMM PF05437 YP_001065119.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001065121.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001065122.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_001065123.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001065124.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001065125.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001065126.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001065130.1 identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666 YP_001065131.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065132.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001065134.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_001065136.1 identified by match to protein family HMM PF04248 YP_001065137.1 identified by match to protein family HMM PF06240 YP_001065138.1 identified by match to protein family HMM PF00440 YP_001065140.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001065141.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_001065142.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001065144.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001065145.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001065146.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001065147.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02818 YP_001065148.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_001065149.1 identified by match to protein family HMM PF00950 YP_001065150.1 identified by match to protein family HMM PF00005 YP_001065151.1 identified by match to protein family HMM PF01297 YP_001065152.1 identified by match to protein family HMM PF01475 YP_001065153.1 Converts D-sorbitol to L-sorbose YP_001065154.1 identified by match to protein family HMM PF00294 YP_001065155.1 identified by match to protein family HMM PF08013; match to protein family HMM TIGR02810 YP_001065156.1 identified by match to protein family HMM PF01547 YP_001065158.1 identified by match to protein family HMM PF00528 YP_001065159.1 identified by match to protein family HMM PF00528 YP_001065160.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001065161.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_001065162.1 identified by match to protein family HMM TIGR01409 YP_001065164.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065165.1 identified by match to protein family HMM PF00144 YP_001065166.1 identified by match to protein family HMM PF07690 YP_001065167.1 identified by match to protein family HMM PF04198 YP_001065168.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_001065169.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_001065170.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065171.1 catalyzes the formation of benzaldehyde from benzoylformate YP_001065172.1 identified by match to protein family HMM PF00171 YP_001065173.1 identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM TIGR00745 YP_001065175.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065176.1 identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036 YP_001065177.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814 YP_001065178.1 identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035 YP_001065179.1 identified by match to protein family HMM PF01037 YP_001065180.1 identified by match to protein family HMM PF01613 YP_001065181.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_001065183.1 identified by match to protein family HMM PF01904 YP_001065184.1 identified by match to protein family HMM PF02353 YP_001065185.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_001065186.1 identified by match to protein family HMM PF00899 YP_001065187.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001065188.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001065189.1 identified by match to protein family HMM PF00892 YP_001065191.1 identified by match to protein family HMM PF01520 YP_001065192.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001065193.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276 YP_001065194.1 identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589 YP_001065195.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001065197.1 identified by match to protein family HMM PF00501 YP_001065198.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_001065199.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001065200.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001065201.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001065202.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001065204.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001065205.1 identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001065207.1 identified by match to protein family HMM PF00106 YP_001065208.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001065209.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001065210.1 identified by match to protein family HMM PF03966 YP_001065211.1 Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_001065213.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001065214.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001065218.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_001065219.1 identified by match to protein family HMM PF00027 YP_001065220.1 identified by match to protein family HMM PF06127 YP_001065221.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate YP_001065224.1 identified by match to protein family HMM PF00563 YP_001065226.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001065228.1 identified by match to protein family HMM PF00285; match to protein family HMM PF00376 YP_001065231.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001065232.1 identified by match to protein family HMM PF00248 YP_001065237.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001065238.1 identified by match to protein family HMM PF02643 YP_001065239.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093 YP_001065240.1 Converts isocitrate to alpha ketoglutarate YP_001065242.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732 YP_001065243.1 identified by match to protein family HMM PF00313 YP_001065244.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001065245.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639 YP_001065246.1 identified by match to protein family HMM PF00324 YP_001065248.1 identified by match to protein family HMM PF03988 YP_001065249.1 catalyzes the formation of dUMP from dUTP YP_001065250.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001065251.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001065252.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_001065253.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001065254.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001065255.1 identified by match to protein family HMM PF01189 YP_001065256.1 identified by match to protein family HMM PF00924 YP_001065257.1 identified by match to protein family HMM PF00487 YP_001065259.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001065260.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_001065262.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001065263.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001065264.1 required for 70S ribosome assembly YP_001065265.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001065266.1 identified by match to protein family HMM PF00254 YP_001065267.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001065268.1 identified by match to protein family HMM PF01609 YP_001065270.1 identified by match to protein family HMM PF02653 YP_001065271.1 identified by match to protein family HMM PF02653 YP_001065272.1 identified by match to protein family HMM PF00005 YP_001065273.1 identified by match to protein family HMM PF00005 YP_001065276.1 identified by match to protein family HMM PF00583 YP_001065277.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001065278.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose YP_001065279.1 identified by match to protein family HMM PF01370 YP_001065281.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001065282.1 identified by match to protein family HMM PF04234 YP_001065283.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065284.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065285.1 identified by match to protein family HMM PF00561 YP_001065286.1 identified by match to protein family HMM PF03473 YP_001065287.1 identified by match to protein family HMM PF00701 YP_001065288.1 identified by match to protein family HMM PF00596 YP_001065289.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001065292.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065293.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001065294.1 identified by match to protein family HMM PF06073 YP_001065295.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_001065296.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001065297.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034 YP_001065298.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_001065299.1 identified by match to protein family HMM PF01903 YP_001065300.1 identified by match to protein family HMM PF03739 YP_001065301.1 identified by match to protein family HMM PF03739 YP_001065302.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001065303.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_001065305.1 identified by match to protein family HMM PF00034 YP_001065307.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001065308.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065310.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001065311.1 identified by match to protein family HMM PF04402 YP_001065312.1 identified by match to protein family HMM PF04543 YP_001065313.1 identified by match to protein family HMM PF05164 YP_001065315.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_001065316.1 identified by match to protein family HMM PF01032 YP_001065317.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02277; match to protein family HMM TIGR03160 YP_001065318.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_001065319.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162 YP_001065321.1 identified by match to protein family HMM PF01497 YP_001065322.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_001065323.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001065324.1 identified by match to protein family HMM PF02283 YP_001065325.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001065326.1 identified by match to protein family HMM PF07681 YP_001065327.1 identified by match to protein family HMM PF01656 YP_001065328.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001065329.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001065331.1 identified by match to protein family HMM PF02616 YP_001065333.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_001065334.1 identified by match to protein family HMM PF04357 YP_001065336.1 identified by match to protein family HMM PF00891 YP_001065337.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001065339.1 identified by match to protein family HMM PF00691; match to protein family HMM PF05433 YP_001065341.1 identified by match to protein family HMM PF01656 YP_001065342.1 identified by match to protein family HMM PF00080 YP_001065343.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001065344.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711 YP_001065346.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001065347.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001065349.1 identified by match to protein family HMM PF00577 YP_001065351.1 identified by match to protein family HMM PF05229 YP_001065352.1 identified by match to protein family HMM PF05229 YP_001065354.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05175 YP_001065355.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001065357.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001065358.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis YP_001065359.1 identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001065361.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065362.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001065363.1 identified by match to protein family HMM PF00171 YP_001065364.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001065368.1 identified by match to protein family HMM PF04339 YP_001065369.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001065370.1 identified by match to protein family HMM PF00543 YP_001065372.1 identified by match to protein family HMM PF00005 YP_001065373.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001065374.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001065375.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_001065377.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_001065379.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065380.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001065383.1 identified by match to protein family HMM PF00528 YP_001065384.1 identified by match to protein family HMM PF00005 YP_001065389.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_001065392.1 identified by match to protein family HMM PF01609 YP_001065393.1 identified by match to protein family HMM PF07690 YP_001065394.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_001065403.1 serine protease inhibitor, inhibits trypsin and other proteases YP_001065404.1 identified by match to protein family HMM PF00768 YP_001065409.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_001065412.1 identified by match to protein family HMM PF03865 YP_001065418.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001065419.1 identified by match to protein family HMM PF00561 YP_001065421.1 identified by match to protein family HMM PF00301 YP_001065423.1 identified by match to protein family HMM PF00005 YP_001065424.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001065425.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001065429.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065430.1 identified by match to protein family HMM PF05232 YP_001065431.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065433.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065434.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001065436.1 identified by match to protein family HMM PF00850 YP_001065438.1 identified by match to protein family HMM PF02417 YP_001065439.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001065440.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_001065441.1 identified by match to protein family HMM PF01042 YP_001065442.1 identified by match to protein family HMM PF00155 YP_001065443.1 identified by match to protein family HMM PF00892 YP_001065445.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001065446.1 molecular chaperone YP_001065447.1 identified by match to protein family HMM PF04345 YP_001065451.1 identified by match to protein family HMM PF00474 YP_001065452.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_001065453.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874 YP_001065455.1 identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843 YP_001065457.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001065458.1 identified by match to protein family HMM PF00034 YP_001065459.1 identified by match to protein family HMM PF00034 YP_001065461.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001065462.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001065463.1 Involved in the electron transport chain YP_001065464.1 identified by match to protein family HMM PF00440 YP_001065465.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_001065468.1 identified by match to protein family HMM PF00723 YP_001065472.1 identified by match to protein family HMM PF01580 YP_001065473.1 identified by match to protein family HMM PF03724 YP_001065475.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001065480.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001065482.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_001065483.1 identified by match to protein family HMM PF00581 YP_001065485.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_001065486.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203 YP_001065487.1 identified by match to protein family HMM PF00534 YP_001065488.1 identified by match to protein family HMM PF01075 YP_001065490.1 identified by match to protein family HMM PF00534 YP_001065491.1 identified by match to protein family HMM PF01075 YP_001065492.1 identified by match to protein family HMM PF00535 YP_001065495.1 identified by match to protein family HMM PF07690 YP_001065498.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001065500.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957 YP_001065510.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001065512.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001065513.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001065514.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001065515.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_001065516.1 catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP YP_001065517.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001065518.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001065519.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001065521.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001065522.1 identified by match to protein family HMM PF00106 YP_001065523.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001065524.1 identified by match to protein family HMM PF00107 YP_001065528.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001065529.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001065530.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex YP_001065532.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_001065533.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065535.1 identified by match to protein family HMM PF03891 YP_001065536.1 identified by match to protein family HMM PF00893 YP_001065538.1 identified by match to protein family HMM PF02687 YP_001065540.1 identified by match to protein family HMM PF01152 YP_001065542.1 identified by match to protein family HMM PF07973 YP_001065543.1 identified by match to protein family HMM PF06041 YP_001065544.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001065545.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065549.1 Converts glucose to D-glucono-1,5 lactone YP_001065550.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001065551.1 identified by match to protein family HMM PF00440 YP_001065552.1 identified by match to protein family HMM PF01219 YP_001065553.1 identified by match to protein family HMM PF00534 YP_001065554.1 identified by match to protein family HMM PF00149 YP_001065555.1 identified by match to protein family HMM PF06271 YP_001065558.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001065560.1 acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate YP_001065561.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001065562.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001065563.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001065564.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001065565.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001065566.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001065567.1 identified by match to protein family HMM PF00484 YP_001065571.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001065573.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001065574.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824 YP_001065575.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001065576.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001065577.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065578.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001065579.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065580.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065581.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065582.1 identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959 YP_001065583.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001065584.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065585.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065586.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065587.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065588.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_001065589.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065590.1 Catalyzes the transfer of electrons from NADH to quinone YP_001065592.1 identified by match to protein family HMM PF00293 YP_001065593.1 identified by match to protein family HMM PF06676 YP_001065594.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001065595.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001065596.1 identified by match to protein family HMM PF01575 YP_001065597.1 identified by match to protein family HMM PF01575 YP_001065600.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001065601.1 identified by match to protein family HMM PF01636 YP_001065602.1 identified by match to protein family HMM PF00300 YP_001065603.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001065605.1 identified by match to protein family HMM PF02798 YP_001065606.1 catalyzes the transfer of an amino moiety YP_001065608.1 identified by match to protein family HMM PF03883 YP_001065609.1 identified by match to protein family HMM PF00246 YP_001065612.1 identified by match to protein family HMM PF00196 YP_001065615.1 identified by match to protein family HMM PF00557 YP_001065617.1 identified by match to protein family HMM PF00165 YP_001065618.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001065621.1 identified by match to protein family HMM TIGR01409; match to protein family HMM TIGR01728 YP_001065625.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001065629.1 identified by match to protein family HMM PF00034 YP_001065631.1 identified by match to protein family HMM PF00116 YP_001065632.1 identified by match to protein family HMM PF00115 YP_001065633.1 identified by match to protein family HMM PF00034 YP_001065636.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001065637.1 identified by match to protein family HMM PF00578 YP_001065638.1 identified by match to protein family HMM PF01113; match to protein family HMM PF01370 YP_001065640.1 identified by match to protein family HMM PF00873 YP_001065641.1 identified by match to protein family HMM PF00873 YP_001065642.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001065643.1 identified by match to protein family HMM PF01614 YP_001065649.1 identified by match to protein family HMM PF02082 YP_001065650.1 identified by match to protein family HMM PF01370; match to protein family HMM PF05368 YP_001065651.1 identified by match to protein family HMM PF05995 YP_001065652.1 identified by match to protein family HMM PF01037 YP_001065653.1 identified by match to protein family HMM PF00005 YP_001065654.1 identified by match to protein family HMM PF00528 YP_001065655.1 identified by match to protein family HMM PF01547 YP_001065658.1 identified by match to protein family HMM PF00324 YP_001065660.1 identified by match to protein family HMM PF05976 YP_001065662.1 identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450 YP_001065663.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609 YP_001065665.1 identified by match to protein family HMM PF00472 YP_001065667.1 identified by match to protein family HMM PF00563 YP_001065671.1 identified by match to protein family HMM PF00892 YP_001065674.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001065675.1 identified by match to protein family HMM TIGR02953 YP_001065676.1 identified by match to protein family HMM PF06764 YP_001065678.1 identified by match to protein family HMM PF00174 YP_001065680.1 identified by match to protein family HMM PF00892 YP_001065681.1 identified by match to protein family HMM PF07690 YP_001065683.1 identified by match to protein family HMM PF03988 YP_001065685.1 identified by match to protein family HMM PF00149 YP_001065686.1 identified by match to protein family HMM PF00005 YP_001065688.1 identified by match to protein family HMM PF00528 YP_001065691.1 identified by match to protein family HMM PF00528 YP_001065692.1 identified by match to protein family HMM PF01547 YP_001065693.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001065707.1 identified by match to protein family HMM PF01695 YP_001065708.1 identified by match to protein family HMM PF07120 YP_001065710.1 identified by match to protein family HMM PF05930 YP_001065715.1 identified by match to protein family HMM PF00589 YP_001065722.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001065725.1 identified by match to protein family HMM PF07040 YP_001065728.1 identified by match to protein family HMM PF04299 YP_001065729.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001065730.1 identified by match to protein family HMM PF01037 YP_001065731.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001065732.1 identified by match to protein family HMM PF03055 YP_001065734.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065735.1 identified by match to protein family HMM PF00106 YP_001065738.1 identified by match to protein family HMM PF06073 YP_001065739.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001065741.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001065744.1 identified by match to protein family HMM PF00011 YP_001065745.1 identified by match to protein family HMM PF00011 YP_001065748.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001065749.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001065751.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065752.1 identified by match to protein family HMM PF03817 YP_001065753.1 identified by match to protein family HMM PF03818 YP_001065756.1 acyl carrier protein of malonate decarboxylase YP_001065757.1 The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A YP_001065758.1 identified by match to protein family HMM PF06833 YP_001065759.1 catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein YP_001065760.1 identified by match to protein family HMM PF01874 YP_001065764.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001065766.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065767.1 identified by match to protein family HMM PF02694 YP_001065768.1 3'-5' exonuclease of DNA polymerase III YP_001065769.1 identified by match to protein family HMM PF00075 YP_001065771.1 identified by match to protein family HMM PF00753 YP_001065772.1 identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474 YP_001065773.1 identified by match to protein family HMM PF07690 YP_001065776.1 identified by match to protein family HMM PF00165 YP_001065778.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001065779.1 identified by match to protein family HMM PF01810 YP_001065780.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001065781.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001065783.1 identified by match to protein family HMM PF01985 YP_001065784.1 identified by match to protein family HMM PF01728 YP_001065785.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001065786.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_001065787.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001065788.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975 YP_001065789.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001065790.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions YP_001065791.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001065792.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001065793.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154 YP_001065794.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966 YP_001065796.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001065797.1 identified by match to protein family HMM PF02541 YP_001065804.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249 YP_001065808.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001065811.1 identified by match to protein family HMM PF00501 YP_001065814.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001065815.1 identified by match to protein family HMM PF01263 YP_001065816.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_001065820.1 identified by match to protein family HMM PF00665 YP_001065821.1 identified by match to protein family HMM PF01527 YP_001065825.1 identified by match to protein family HMM PF05488 YP_001065827.1 identified by match to protein family HMM PF02409; match to protein family HMM PF05583; match to protein family HMM TIGR00027 YP_001065828.1 identified by match to protein family HMM PF00155 YP_001065833.1 identified by match to protein family HMM PF00128 YP_001065834.1 identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217 YP_001065835.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402 YP_001065836.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100 YP_001065837.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001065838.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457 YP_001065839.1 identified by match to protein family HMM PF00128 YP_001065842.1 identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840 YP_001065852.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065854.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065856.1 identified by match to protein family HMM PF05666 YP_001065859.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065861.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662 YP_001065862.1 identified by match to protein family HMM PF00691 YP_001065863.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001065864.1 identified by match to protein family HMM PF00816 YP_001065868.1 identified by match to protein family HMM PF00652; match to protein family HMM PF01344 YP_001065872.1 identified by match to protein family HMM PF05947 YP_001065874.1 identified by match to protein family HMM PF05488 YP_001065877.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001065881.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001065886.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001065894.1 identified by match to protein family HMM PF00816 YP_001065895.1 identified by match to protein family HMM PF04909 YP_001065896.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001065898.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065904.1 identified by match to protein family HMM PF05229 YP_001065905.1 identified by match to protein family HMM PF05229 YP_001065907.1 identified by match to protein family HMM PF00577 YP_001065908.1 identified by match to protein family HMM PF05229 YP_001065910.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001065911.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_001065912.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001065913.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001065915.1 identified by match to protein family HMM PF00529 YP_001065918.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_001065919.1 identified by match to protein family HMM PF04185 YP_001065920.1 identified by match to protein family HMM PF03150 YP_001065922.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_001065924.1 identified by match to protein family HMM PF00293 YP_001065926.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001065929.1 identified by match to protein family HMM PF02515 YP_001065931.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001065932.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065933.1 identified by match to protein family HMM PF06779; match to protein family HMM PF07690 YP_001065934.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001065937.1 identified by match to protein family HMM PF00293 YP_001065938.1 identified by match to protein family HMM PF01906; similar to protein Bcep18194_B0595 YP_001065939.1 identified by match to protein family HMM PF00465 YP_001065941.1 identified by match to protein family HMM PF03061 YP_001065942.1 identified by match to protein family HMM PF02653 YP_001065943.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_001065944.1 identified by match to protein family HMM PF00005 YP_001065945.1 identified by match to protein family HMM PF06845 YP_001065946.1 identified by match to protein family HMM PF01261 YP_001065947.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001065948.1 identified by match to protein family HMM PF00294 YP_001065949.1 identified by match to protein family HMM PF00005 YP_001065950.1 identified by match to protein family HMM PF02653 YP_001065952.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001065953.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001065954.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_001065955.1 identified by match to protein family HMM PF01206 YP_001065957.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001065958.1 identified by match to protein family HMM PF01476 YP_001065959.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226 YP_001065961.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001065962.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001065963.1 identified by match to protein family HMM PF00580 YP_001065964.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001065965.1 identified by match to protein family HMM PF07690 YP_001065966.1 identified by match to protein family HMM PF00015 YP_001065968.1 identified by match to protein family HMM PF00529 YP_001065969.1 identified by match to protein family HMM PF07869 YP_001065970.1 identified by match to protein family HMM PF04632 YP_001065971.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001065972.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001065974.1 identified by match to protein family HMM PF00149 YP_001065975.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001065977.1 identified by match to protein family HMM PF00258; match to protein family HMM PF03358 YP_001065978.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001065981.1 identified by match to protein family HMM PF00571 YP_001065982.1 identified by match to protein family HMM PF01553; match to protein family HMM PF07690 YP_001065984.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001065985.1 identified by match to protein family HMM PF00665 YP_001065986.1 identified by match to protein family HMM PF01266; match to protein family HMM PF05187 YP_001065987.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001065988.1 identified by match to protein family HMM PF03061 YP_001065994.1 identified by match to protein family HMM PF00196 YP_001065996.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001065997.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001065998.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001065999.1 identified by match to protein family HMM PF01522 YP_001066000.1 identified by match to protein family HMM PF07366 YP_001066001.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066002.1 identified by match to protein family HMM PF00561 YP_001066003.1 identified by match to protein family HMM PF01042 YP_001066004.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001066005.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001066006.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198 YP_001066007.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001066008.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001066009.3 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001066010.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001066011.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001066012.1 identified by match to protein family HMM PF00376 YP_001066013.1 identified by match to protein family HMM PF05665 YP_001066014.1 identified by match to protein family HMM PF01757 YP_001066019.1 identified by match to protein family HMM PF03992 YP_001066022.1 identified by match to protein family HMM PF02698 YP_001066026.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066027.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281 YP_001066028.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001066029.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001066030.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001066031.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001066032.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001066033.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001066035.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001066036.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR00998 YP_001066037.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001066038.1 identified by match to protein family HMM PF01047 YP_001066040.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001066041.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001066042.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_001066043.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001066044.1 identified by match to protein family HMM PF03969 YP_001066054.1 identified by match to protein family HMM PF04964 YP_001066055.1 identified by match to protein family HMM PF01478 YP_001066056.1 identified by match to protein family HMM PF07811 YP_001066057.1 identified by match to protein family HMM PF06981 YP_001066058.1 identified by match to protein family HMM PF00263 YP_001066060.1 identified by match to protein family HMM PF00437 YP_001066061.1 identified by match to protein family HMM PF00482 YP_001066062.1 identified by match to protein family HMM PF00482 YP_001066063.1 identified by match to protein family HMM PF07719 YP_001066066.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001066068.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001066072.1 identified by match to protein family HMM PF00501 YP_001066074.1 identified by match to protein family HMM PF00440 YP_001066075.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001066077.1 identified by match to protein family HMM PF00583 YP_001066079.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_001066081.1 identified by match to protein family HMM PF04185 YP_001066082.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001066083.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001066084.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001066086.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001066087.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_001066088.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001066089.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408 YP_001066090.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001066091.1 identified by match to protein family HMM PF00497 YP_001066092.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001066093.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001066094.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001066095.1 identified by match to protein family HMM PF00293 YP_001066097.1 identified by match to protein family HMM PF03928 YP_001066098.1 identified by match to protein family HMM PF00893 YP_001066099.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_001066102.1 catalyzes the release of sulfite from alkanesulfonates YP_001066103.1 identified by match to protein family HMM PF00528 YP_001066104.1 identified by match to protein family HMM PF00005 YP_001066105.1 identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638 YP_001066108.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742 YP_001066110.1 identified by match to protein family HMM PF00375 YP_001066112.1 identified by match to protein family HMM PF01638 YP_001066113.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001066114.1 identified by match to protein family HMM PF00248 YP_001066115.1 identified by match to protein family HMM PF03773 YP_001066119.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291 YP_001066120.1 involved in the export of lipooligosaccharides during nodulation YP_001066121.1 identified by match to protein family HMM PF00582 YP_001066124.1 Represses a number of genes involved in the response to DNA damage YP_001066126.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971 YP_001066127.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139 YP_001066128.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140 YP_001066129.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00968 YP_001066130.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066131.1 identified by match to protein family HMM PF00532 YP_001066133.1 identified by match to protein family HMM PF00005 YP_001066134.1 identified by match to protein family HMM PF02653 YP_001066135.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001066136.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001066137.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001066138.1 identified by match to protein family HMM PF06798 YP_001066139.1 identified by match to protein family HMM PF04285 YP_001066140.1 identified by match to protein family HMM PF04293 YP_001066142.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883 YP_001066145.1 identified by match to protein family HMM PF00005 YP_001066146.1 identified by match to protein family HMM PF00528 YP_001066147.1 identified by match to protein family HMM PF04964 YP_001066148.1 identified by match to protein family HMM PF01478 YP_001066149.1 identified by match to protein family HMM PF06981 YP_001066150.1 identified by match to protein family HMM PF00263 YP_001066153.1 identified by match to protein family HMM PF00437 YP_001066154.1 identified by match to protein family HMM PF00482 YP_001066155.1 identified by match to protein family HMM PF00482 YP_001066156.1 identified by match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001066157.1 identified by match to protein family HMM PF07811 YP_001066160.1 identified by match to protein family HMM PF00497 YP_001066163.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001066164.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001066165.1 identified by match to protein family HMM PF01551 YP_001066167.1 identified by match to protein family HMM PF00440 YP_001066168.1 MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_001066169.1 MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery YP_001066170.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001066174.1 identified by match to protein family HMM PF00419 YP_001066175.1 identified by match to protein family HMM PF00577 YP_001066176.1 identified by match to protein family HMM PF00345 YP_001066178.1 identified by match to protein family HMM PF00005 YP_001066180.1 identified by match to protein family HMM PF00733 YP_001066184.1 identified by match to protein family HMM PF00165 YP_001066185.1 identified by match to protein family HMM PF00532 YP_001066186.1 identified by match to protein family HMM PF00005 YP_001066187.1 identified by match to protein family HMM PF02653 YP_001066189.1 identified by match to protein family HMM PF00107 YP_001066190.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001066191.1 identified by match to protein family HMM PF00106 YP_001066196.1 RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease YP_001066197.1 identified by match to protein family HMM PF03621 YP_001066198.1 identified by match to protein family HMM PF02668 YP_001066199.1 identified by match to protein family HMM PF00005 YP_001066200.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_001066202.1 identified by match to protein family HMM PF01497 YP_001066205.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194 YP_001066207.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_001066208.2 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001066210.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001066213.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685 YP_001066214.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide YP_001066215.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3 YP_001066217.1 identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802 YP_001066218.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475 YP_001066219.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism YP_001066221.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_001066223.1 identified by match to protein family HMM PF02230 YP_001066227.1 identified by match to protein family HMM PF02839 YP_001066229.1 identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466 YP_001066230.1 catalyzes the formation of precorrin-3 from precorrin-2 YP_001066231.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate YP_001066232.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435 YP_001066234.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469 YP_001066235.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001066236.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001066237.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001066238.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02638 YP_001066239.1 identified by match to protein family HMM PF07690 YP_001066240.1 identified by match to protein family HMM PF01047 YP_001066242.1 identified by match to protein family HMM PF01094 YP_001066244.1 identified by match to protein family HMM PF01047 YP_001066245.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001066246.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066247.1 identified by match to protein family HMM PF03928 YP_001066248.1 identified by match to protein family HMM PF00106 YP_001066250.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001066251.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway YP_001066252.1 catalyzes the degradation of arginine to citruline and ammonia YP_001066253.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_001066257.1 identified by match to protein family HMM PF00528 YP_001066258.1 identified by match to protein family HMM PF00005 YP_001066259.1 identified by match to protein family HMM PF00528 YP_001066260.1 identified by match to protein family HMM PF04069 YP_001066263.1 identified by match to protein family HMM PF07690 YP_001066264.1 activates fatty acids by binding to coenzyme A YP_001066267.1 identified by match to protein family HMM PF00015 YP_001066268.1 identified by match to protein family HMM PF01584 YP_001066271.1 identified by match to protein family HMM PF00892 YP_001066272.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001066274.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001066276.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00975 YP_001066277.1 identified by match to protein family HMM PF02373 YP_001066278.1 identified by match to protein family HMM PF00155 YP_001066280.1 identified by match to protein family HMM PF00551 YP_001066281.1 identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032 YP_001066282.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838 YP_001066283.1 identified by match to protein family HMM PF00288 YP_001066284.1 identified by match to protein family HMM PF07690 YP_001066286.1 identified by match to protein family HMM PF00291 YP_001066287.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_001066288.1 identified by match to protein family HMM PF00202; match to protein family HMM PF01212 YP_001066289.1 identified by match to protein family HMM PF00583 YP_001066290.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001066292.1 identified by match to protein family HMM PF02543 YP_001066293.1 identified by match to protein family HMM PF01804 YP_001066295.1 identified by match to protein family HMM PF05114 YP_001066297.1 identified by match to protein family HMM PF07681 YP_001066299.1 identified by match to protein family HMM PF06532 YP_001066300.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001066303.1 identified by match to protein family HMM PF00581 YP_001066304.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001066305.1 identified by match to protein family HMM PF01979 YP_001066306.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066308.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001066309.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001066310.1 identified by match to protein family HMM PF00221 YP_001066313.1 identified by match to protein family HMM PF00267 YP_001066318.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001066321.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001066323.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; match to protein family HMM PF07723 YP_001066324.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 YP_001066325.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001066328.1 identified by match to protein family HMM PF00353; match to protein family HMM PF01839 YP_001066329.1 identified by match to protein family HMM PF02321 YP_001066330.1 identified by match to protein family HMM PF00691 YP_001066338.1 identified by match to protein family HMM PF01764 YP_001066341.1 identified by match to protein family HMM PF00563 YP_001066342.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001066343.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545 YP_001066348.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001066352.1 identified by match to protein family HMM PF00419 YP_001066353.1 identified by match to protein family HMM PF00577 YP_001066354.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_001066355.1 identified by match to protein family HMM PF00419 YP_001066359.1 identified by match to protein family HMM TIGR01840 YP_001066362.1 identified by match to protein family HMM PF00465 YP_001066368.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820 YP_001066369.1 identified by match to protein family HMM PF00999 YP_001066370.1 identified by match to protein family HMM PF00355 YP_001066373.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001066375.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001066376.1 identified by match to protein family HMM PF01061 YP_001066377.1 identified by match to protein family HMM PF00005 YP_001066378.1 identified by match to protein family HMM PF02424 YP_001066380.1 reduces nitrous oxide to nitrogen YP_001066381.1 identified by match to protein family HMM PF05048 YP_001066382.1 identified by match to protein family HMM PF00005 YP_001066384.1 identified by match to protein family HMM PF05573 YP_001066387.1 identified by match to protein family HMM PF00034 YP_001066388.1 identified by match to protein family HMM PF04205 YP_001066390.1 identified by match to protein family HMM PF00804; match to protein family HMM PF00924 YP_001066397.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_001066398.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_001066399.1 identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106 YP_001066401.1 identified by match to protein family HMM PF01210; match to protein family HMM PF01408; match to protein family HMM PF02254; match to protein family HMM PF03435 YP_001066406.1 identified by match to protein family HMM PF01037 YP_001066414.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001066416.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001066417.1 identified by match to protein family HMM PF07690 YP_001066418.1 identified by match to protein family HMM PF00294 YP_001066419.1 identified by match to protein family HMM PF01261 YP_001066422.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066423.1 identified by match to protein family HMM PF03601; match to protein family HMM TIGR00698 YP_001066424.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_001066425.1 identified by match to protein family HMM PF00440 YP_001066426.1 identified by match to protein family HMM TIGR01730 YP_001066427.1 identified by match to protein family HMM PF00873 YP_001066428.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001066429.1 identified by match to protein family HMM PF00376; match to protein family HMM PF05583 YP_001066435.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF07728 YP_001066436.1 identified by match to protein family HMM PF00753 YP_001066437.1 identified by match to protein family HMM PF04273; match to protein family HMM PF07992; match to protein family HMM TIGR01244 YP_001066438.1 identified by match to protein family HMM PF01925 YP_001066440.1 identified by match to protein family HMM PF00528 YP_001066441.1 identified by match to protein family HMM PF00528 YP_001066442.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001066443.1 identified by match to protein family HMM PF01547 YP_001066444.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_001066445.1 identified by match to protein family HMM PF06945 YP_001066446.1 identified by match to protein family HMM PF03922; match to protein family HMM TIGR03304 YP_001066447.1 identified by match to protein family HMM PF03060 YP_001066448.1 identified by match to protein family HMM PF00171 YP_001066450.1 identified by match to protein family HMM PF00005 YP_001066452.1 identified by match to protein family HMM PF05170 YP_001066453.1 identified by match to protein family HMM PF00005 YP_001066454.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_001066458.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488 YP_001066459.1 catalyzes the formation of L-homocysteine from cystathionine YP_001066461.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_001066462.1 identified by match to protein family HMM PF00294 YP_001066463.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_001066464.1 identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848 YP_001066465.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_001066466.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001066467.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838 YP_001066468.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001066469.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001066472.1 identified by match to protein family HMM PF04325 YP_001066475.1 identified by match to protein family HMM PF00575 YP_001066477.1 identified by match to protein family HMM PF02705 YP_001066479.1 identified by match to protein family HMM PF00156 YP_001066480.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001066481.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001066483.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932 YP_001066484.1 identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933 YP_001066485.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_001066486.1 Stimulates the elongation of poly(A) tails YP_001066487.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001066491.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001066492.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001066494.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048 YP_001066495.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001066496.1 identified by match to protein family HMM PF01027 YP_001066497.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_001066498.1 identified by match to protein family HMM PF03372 YP_001066500.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses YP_001066501.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001066502.1 identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080 YP_001066503.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001066505.1 identified by match to protein family HMM PF02515 YP_001066506.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001066507.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001066508.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001066510.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001066512.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001066513.1 identified by match to protein family HMM PF00376 YP_001066514.1 identified by match to protein family HMM PF07690 YP_001066515.1 identified by match to protein family HMM PF06167 YP_001066516.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001066519.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001066521.1 identified by match to protein family HMM PF02627 YP_001066522.1 identified by match to protein family HMM PF00376 YP_001066524.1 identified by match to protein family HMM PF06078 YP_001066525.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001066527.1 identified by match to protein family HMM PF02082 YP_001066528.1 identified by match to protein family HMM PF01152 YP_001066529.1 identified by match to protein family HMM PF02391 YP_001066530.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_001066531.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001066533.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001066534.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001066535.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_001066536.1 identified by match to protein family HMM PF04430 YP_001066537.1 identified by match to protein family HMM PF02366 YP_001066539.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001066540.1 identified by match to protein family HMM PF00535 YP_001066541.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_001066542.1 identified by match to protein family HMM PF01370 YP_001066543.1 identified by match to protein family HMM PF01522 YP_001066544.1 identified by match to protein family HMM PF00578 YP_001066546.1 identified by match to protein family HMM PF02562 YP_001066547.1 identified by match to protein family HMM PF00877 YP_001066548.1 identified by match to protein family HMM PF01384 YP_001066549.1 identified by match to protein family HMM PF01865 YP_001066550.1 unwinds double stranded DNA YP_001066552.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001066553.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001066555.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001066557.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001066559.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409 YP_001066560.1 identified by match to protein family HMM PF00116 YP_001066562.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066563.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate YP_001066564.1 identified by match to protein family HMM PF01261 YP_001066565.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01505 YP_001066567.1 identified by match to protein family HMM PF01476 YP_001066569.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520 YP_001066571.1 identified by match to protein family HMM PF07769 YP_001066576.1 identified by match to protein family HMM PF00534 YP_001066578.1 identified by match to protein family HMM PF00924 YP_001066580.1 identified by match to protein family HMM PF00023 YP_001066581.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001066582.1 identified by match to protein family HMM PF00583 YP_001066583.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001066584.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001066585.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001066586.1 identified by match to protein family HMM PF01571 YP_001066587.1 identified by match to protein family HMM PF05742 YP_001066588.1 identified by match to protein family HMM PF00583 YP_001066589.1 identified by match to protein family HMM PF07859 YP_001066590.1 identified by match to protein family HMM PF00107 YP_001066591.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001066592.1 identified by match to protein family HMM PF07876 YP_001066595.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001066596.1 identified by match to protein family HMM PF00857 YP_001066597.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_001066599.1 activates fatty acids by binding to coenzyme A YP_001066600.1 identified by match to protein family HMM PF02696 YP_001066601.1 identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357 YP_001066602.1 Involved in cell division; probably involved in intracellular septation YP_001066603.1 identified by match to protein family HMM PF01722 YP_001066604.1 identified by match to protein family HMM PF00639 YP_001066605.1 identified by match to protein family HMM PF00583 YP_001066606.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001066608.1 identified by match to protein family HMM PF01266 YP_001066609.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001066611.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001066612.1 identified by match to protein family HMM PF00005 YP_001066613.1 identified by match to protein family HMM PF00657 YP_001066614.1 identified by match to protein family HMM PF00639 YP_001066625.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001066626.1 binds and unfolds substrates as part of the ClpXP protease YP_001066627.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001066628.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001066630.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001066631.1 identified by match to protein family HMM PF01047 YP_001066633.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001066634.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967 YP_001066635.1 identified by match to protein family HMM PF00267 YP_001066636.1 identified by match to protein family HMM PF07690 YP_001066637.1 identified by match to protein family HMM PF00850 YP_001066643.1 identified by match to protein family HMM PF05488 YP_001066649.1 identified by match to protein family HMM PF00494 YP_001066650.1 identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409 YP_001066655.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation YP_001066656.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001066657.1 identified by match to protein family HMM PF00578 YP_001066658.1 identified by match to protein family HMM PF02627 YP_001066660.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001066661.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001066662.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_001066665.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001066666.1 identified by match to protein family HMM PF00291 YP_001066671.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001066673.1 identified by match to protein family HMM PF04012 YP_001066674.1 identified by match to protein family HMM PF07719 YP_001066675.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001066678.1 identified by match to protein family HMM PF07311 YP_001066681.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066682.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway. YP_001066685.1 identified by match to protein family HMM PF00576; match to protein family HMM TIGR02962 YP_001066686.1 identified by match to protein family HMM PF06181 YP_001066689.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001066690.3 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_001066691.1 identified by match to protein family HMM TIGR03164 YP_001066692.1 identified by match to protein family HMM PF01522 YP_001066693.1 identified by match to protein family HMM PF01177 YP_001066694.1 identified by match to protein family HMM PF02133 YP_001066695.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001066696.1 catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine YP_001066697.1 identified by match to protein family HMM PF00383 YP_001066702.1 identified by match to protein family HMM PF07690 YP_001066714.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001066717.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001066719.1 identified by match to protein family HMM PF05988 YP_001066722.1 identified by match to protein family HMM PF00892 YP_001066723.1 identified by match to protein family HMM PF03658 YP_001066724.1 identified by match to protein family HMM PF03364 YP_001066726.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001066727.1 identified by match to protein family HMM PF01145 YP_001066728.1 identified by match to protein family HMM PF01957 YP_001066729.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001066731.1 identified by match to protein family HMM PF05023 YP_001066732.1 identified by match to protein family HMM PF00082 YP_001066735.1 identified by match to protein family HMM PF03618 YP_001066736.1 identified by match to protein family HMM PF00588 YP_001066737.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001066738.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_001066739.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001066740.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001066741.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001066742.1 identified by match to protein family HMM PF03938 YP_001066743.1 identified by match to protein family HMM PF01103; match to protein family HMM PF07244 YP_001066745.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001066746.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001066747.1 identified by match to protein family HMM PF01148 YP_001066748.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_001066749.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001066750.1 Catalyzes the phosphorylation of UMP to UDP YP_001066751.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001066752.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001066754.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_001066755.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001066756.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001066757.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001066758.1 identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575 YP_001066761.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_001066762.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_001066763.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_001066764.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001066765.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_001066766.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001066767.1 involved in methylation of ribosomal protein L3 YP_001066768.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_001066769.1 identified by match to protein family HMM PF00255 YP_001066770.1 identified by match to protein family HMM PF00005 YP_001066772.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001066773.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001066774.1 identified by match to protein family HMM PF07690 YP_001066775.1 identified by match to protein family HMM TIGR00097 YP_001066778.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001066779.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001066780.1 identified by match to protein family HMM PF00814 YP_001066781.1 identified by match to protein family HMM PF00887 YP_001066782.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001066783.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_001066784.1 identified by match to protein family HMM PF00582 YP_001066785.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066786.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_001066787.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001066789.1 identified by match to protein family HMM PF03674 YP_001066790.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_001066791.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001066793.1 identified by match to protein family HMM PF00583 YP_001066795.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001066796.1 identified by match to protein family HMM PF01734 YP_001066797.1 identified by match to protein family HMM PF00877 YP_001066798.1 identified by match to protein family HMM PF00005 YP_001066799.1 identified by match to protein family HMM PF00528 YP_001066800.1 identified by match to protein family HMM PF00528 YP_001066801.1 identified by match to protein family HMM PF00496 YP_001066802.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001066805.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001066807.1 identified by match to protein family HMM PF00175 YP_001066809.1 identified by match to protein family HMM PF00037 YP_001066810.1 identified by match to protein family HMM PF00440 YP_001066811.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001066814.1 identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655 YP_001066815.1 identified by match to protein family HMM PF00291 YP_001066816.1 identified by match to protein family HMM PF00288 YP_001066817.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001066818.1 identified by match to protein family HMM PF00535 YP_001066819.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001066820.1 identified by match to protein family HMM PF01757 YP_001066822.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001066823.1 identified by match to protein family HMM PF00456 YP_001066827.1 identified by match to protein family HMM PF02668 YP_001066829.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_001066832.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_001066833.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733 YP_001066834.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001066837.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730 YP_001066838.1 identified by match to protein family HMM PF00873 YP_001066840.1 identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414 YP_001066844.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001066846.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001066847.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001066848.1 identified by match to protein family HMM PF00730 YP_001066849.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001066850.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001066851.1 identified by match to protein family HMM PF00160 YP_001066852.1 identified by match to protein family HMM PF00160 YP_001066853.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_001066855.1 identified by match to protein family HMM PF00132 YP_001066857.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050 YP_001066858.1 identified by match to protein family HMM PF00459 YP_001066861.1 identified by match to protein family HMM PF01610 YP_001066865.1 This protein performs the mismatch recognition step during the DNA repair process YP_001066868.1 identified by match to protein family HMM PF08007 YP_001066870.1 identified by match to protein family HMM PF00753 YP_001066872.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001066874.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001066875.1 identified by match to protein family HMM PF02163 YP_001066876.1 identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057 YP_001066877.1 identified by match to protein family HMM PF02811 YP_001066878.1 identified by match to protein family HMM PF00561 YP_001066879.1 identified by match to protein family HMM PF04305 YP_001066880.1 identified by match to protein family HMM PF00132 YP_001066881.1 identified by match to protein family HMM PF01430 YP_001066883.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_001066884.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001066885.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001066886.2 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001066889.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_001066890.1 identified by match to protein family HMM PF01026 YP_001066891.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211 YP_001066892.1 identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212 YP_001066895.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001066897.2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 YP_001066898.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001066900.1 identified by match to protein family HMM PF05433 YP_001066902.1 identified by match to protein family HMM PF04384 YP_001066903.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007 YP_001066904.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_001066905.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_001066906.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011 YP_001066907.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999 YP_001066908.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_001066909.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001066910.1 identified by match to protein family HMM PF01451 YP_001066912.1 identified by match to protein family HMM PF00037 YP_001066913.1 identified by match to protein family HMM PF02754 YP_001066914.1 identified by match to protein family HMM PF01614 YP_001066915.1 identified by match to protein family HMM PF01609 YP_001066916.1 identified by match to protein family HMM PF00768 YP_001066917.1 identified by match to protein family HMM TIGR01841 YP_001066918.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001066919.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348 YP_001066920.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_001066922.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001066923.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001066924.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001066927.1 identified by match to protein family HMM PF01432 YP_001066928.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001066930.1 identified by match to protein family HMM PF07690 YP_001066931.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886 YP_001066933.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580 YP_001066934.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_001066935.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_001066936.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_001066937.1 identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001066938.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967 YP_001066939.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001066940.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818 YP_001066941.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001066942.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_001066945.1 identified by match to protein family HMM PF00994 YP_001066950.1 identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967 YP_001066951.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_001066952.1 identified by match to protein family HMM PF04362 YP_001066953.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001066954.1 identified by match to protein family HMM PF02515 YP_001066955.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001066956.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001066958.1 identified by match to protein family HMM PF00665 YP_001066959.1 identified by match to protein family HMM PF01527 YP_001066961.1 identified by match to protein family HMM PF00202 YP_001066962.1 identified by match to protein family HMM PF00120 YP_001066963.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_001066967.1 identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017 YP_001066969.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_001066970.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001066971.1 identified by match to protein family HMM PF05962 YP_001066972.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001066973.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018 YP_001066974.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001066977.1 identified by match to protein family HMM PF01609 YP_001066978.1 identified by match to protein family HMM PF01648 YP_001066980.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001066984.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001066985.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_001066986.1 identified by match to protein family HMM PF00487 YP_001066990.1 identified by match to protein family HMM PF01883 YP_001066992.1 identified by match to protein family HMM PF05940 YP_001066993.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001066995.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495 YP_001066999.1 identified by match to protein family HMM PF01136 YP_001067000.1 identified by match to protein family HMM PF01136 YP_001067002.1 identified by match to protein family HMM PF03060 YP_001067004.1 identified by match to protein family HMM PF00027 YP_001067005.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001067006.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001067009.1 identified by match to protein family HMM PF05940 YP_001067011.1 with SufCD activates cysteine desulfurase SufS YP_001067012.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_001067013.1 identified by match to protein family HMM PF01458 YP_001067014.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_001067015.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_001067016.1 identified by match to protein family HMM PF01883 YP_001067019.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001067020.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001067023.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_001067024.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_001067025.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_001067026.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_001067027.1 identified by match to protein family HMM PF00487 YP_001067028.1 identified by match to protein family HMM PF00497 YP_001067030.1 identified by match to protein family HMM PF00043 YP_001067031.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism YP_001067032.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation YP_001067033.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH YP_001067034.1 identified by match to protein family HMM PF04958; match to protein family HMM TIGR03244 YP_001067035.1 identified by match to protein family HMM PF04958 YP_001067036.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate YP_001067039.1 identified by match to protein family HMM PF00165 YP_001067040.1 identified by match to protein family HMM PF00005 YP_001067041.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001067042.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001067046.1 identified by match to protein family HMM PF04794 YP_001067047.1 identified by match to protein family HMM PF04055 YP_001067048.1 identified by match to protein family HMM PF00535 YP_001067050.1 identified by match to protein family HMM PF00296 YP_001067051.1 identified by match to protein family HMM PF00561 YP_001067053.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR00687 YP_001067055.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409 YP_001067057.1 identified by match to protein family HMM PF01094 YP_001067059.1 identified by match to protein family HMM PF01266 YP_001067062.1 identified by match to protein family HMM PF00534 YP_001067064.1 identified by match to protein family HMM PF00005 YP_001067065.1 identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400 YP_001067066.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484 YP_001067067.1 identified by match to protein family HMM PF02630 YP_001067068.1 identified by match to protein family HMM PF04314 YP_001067070.1 identified by match to protein family HMM PF00583 YP_001067071.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001067072.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067075.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001067076.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001067080.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001067081.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001067082.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_001067083.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001067084.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001067085.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001067086.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001067087.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001067088.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001067089.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001067091.1 identified by match to protein family HMM PF05768 YP_001067092.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037 YP_001067093.1 identified by match to protein family HMM PF03888 YP_001067095.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02939 YP_001067096.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001067097.1 carries the fatty acid chain in fatty acid biosynthesis YP_001067098.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001067099.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001067100.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001067101.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001067102.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001067103.1 identified by match to protein family HMM PF02620 YP_001067104.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001067105.1 identified by match to protein family HMM PF00590 YP_001067106.1 identified by match to protein family HMM PF01343 YP_001067107.1 identified by match to protein family HMM PF00355 YP_001067108.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001067109.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001067110.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001067111.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001067112.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_001067113.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_001067115.1 identified by match to protein family HMM PF00583 YP_001067116.1 identified by match to protein family HMM PF02646 YP_001067117.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001067119.1 identified by match to protein family HMM PF02589 YP_001067120.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_001067122.1 identified by match to protein family HMM PF00037 YP_001067123.1 identified by match to protein family HMM PF05981 YP_001067130.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001067131.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001067133.1 identified by match to protein family HMM PF03061 YP_001067137.1 identified by match to protein family HMM PF01022 YP_001067140.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001067141.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001067146.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001067147.1 identified by match to protein family HMM PF00186 YP_001067148.1 identified by match to protein family HMM PF01609 YP_001067149.1 identified by match to protein family HMM PF01523 YP_001067151.1 identified by match to protein family HMM PF04751 YP_001067152.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_001067153.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_001067154.1 identified by match to protein family HMM PF01435 YP_001067155.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001067157.1 catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid YP_001067158.1 identified by match to protein family HMM PF00293 YP_001067160.1 identified by match to protein family HMM PF00583 YP_001067161.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001067162.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001067163.1 Essential for efficient processing of 16S rRNA YP_001067164.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001067168.1 identified by match to protein family HMM PF04055 YP_001067169.1 identified by match to protein family HMM PF01037 YP_001067170.1 catalyzes the oxidative deamination of D-amino acids YP_001067171.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001067172.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001067173.1 identified by match to protein family HMM PF01012 YP_001067174.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001067175.1 identified by match to protein family HMM PF00528 YP_001067176.1 part of the metNIQ transport system for methionine YP_001067177.1 identified by match to protein family HMM PF00561 YP_001067179.1 identified by match to protein family HMM PF00850 YP_001067181.1 identified by match to protein family HMM TIGR02282 YP_001067182.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_001067184.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197 YP_001067185.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198 YP_001067186.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001067187.1 identified by match to protein family HMM PF00515 YP_001067189.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_001067190.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001067191.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001067192.1 fusion of tyrA/aroA YP_001067193.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807 YP_001067194.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001067196.1 negatively supercoils closed circular double-stranded DNA YP_001067198.1 identified by match to protein family HMM PF00691 YP_001067199.1 Involved in ubiquinone biosynthesis YP_001067200.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001067204.1 identified by match to protein family HMM PF00126 YP_001067207.1 identified by match to protein family HMM PF01512 YP_001067208.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_001067210.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_001067211.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721 YP_001067212.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001067214.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07722 YP_001067216.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001067217.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_001067219.1 identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964 YP_001067220.1 catalyzes the formation of inosine from adenosine YP_001067221.1 identified by match to protein family HMM PF00860 YP_001067222.1 Catalyzes the deamination of guanine YP_001067224.1 identified by match to protein family HMM PF01169 YP_001067227.1 identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414 YP_001067229.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001067230.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067231.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001067238.1 identified by match to protein family HMM PF04226 YP_001067242.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715 YP_001067247.1 catalyzes the interconversion of chorismate to prephenate YP_001067249.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01541; match to protein family HMM TIGR00573 YP_001067250.1 identified by match to protein family HMM PF00313 YP_001067252.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001067253.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001067254.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001067255.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001067256.1 Essential for recycling GMP and indirectly, cGMP YP_001067257.1 identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255 YP_001067258.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001067259.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001067260.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001067266.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001067268.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_001067269.1 identified by match to protein family HMM PF00654 YP_001067271.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001067272.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001067273.1 blocks the formation of polar Z-ring septums YP_001067274.1 identified by match to protein family HMM PF00583 YP_001067277.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001067279.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07728 YP_001067281.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_001067282.1 identified by match to protein family HMM PF01580 YP_001067284.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_001067285.1 identified by match to protein family HMM PF01713 YP_001067286.1 identified by match to protein family HMM PF03458 YP_001067287.1 identified by match to protein family HMM PF00005 YP_001067288.1 identified by match to protein family HMM PF00528 YP_001067289.1 identified by match to protein family HMM PF00528 YP_001067291.1 identified by match to protein family HMM PF01547 YP_001067292.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001067293.1 identified by match to protein family HMM TIGR01198 YP_001067294.1 glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_001067295.1 identified by match to protein family HMM PF00497 YP_001067296.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001067297.1 identified by match to protein family HMM PF00005 YP_001067298.1 catalyzes the formation of pyruvate from D-cysteine YP_001067300.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_001067303.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001067304.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001067305.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001067308.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis YP_001067309.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001067310.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001067311.1 identified by match to protein family HMM PF00155 YP_001067313.1 identified by match to protein family HMM PF01464 YP_001067314.1 identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148 YP_001067315.1 identified by match to protein family HMM PF01810 YP_001067317.1 catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine YP_001067321.1 identified by match to protein family HMM PF03807 YP_001067322.1 identified by match to protein family HMM PF02325 YP_001067323.1 identified by match to protein family HMM PF02641 YP_001067324.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001067328.1 identified by match to protein family HMM PF02146 YP_001067329.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001067330.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters UDP disphosphate which reduces the pool of lipid carrier available to the cell YP_001067332.1 identified by match to protein family HMM PF03692 YP_001067334.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001067336.1 identified by match to protein family HMM PF01609 YP_001067337.1 identified by match to protein family HMM PF01135; match to protein family HMM PF05175 YP_001067338.1 identified by match to protein family HMM PF00581 YP_001067339.1 catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor YP_001067342.2 identified by match to protein family HMM PF02653 YP_001067343.1 identified by match to protein family HMM PF02653; match to protein family HMM TIGR01409 YP_001067344.1 identified by match to protein family HMM PF00005 YP_001067345.1 identified by match to protein family HMM PF00005 YP_001067346.1 identified by match to protein family HMM PF01774 YP_001067348.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001067349.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active YP_001067350.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001067351.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_001067352.1 identified by match to protein family HMM PF01730 YP_001067353.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101 YP_001067354.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_001067356.1 identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193 YP_001067357.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001067360.1 identified by match to protein family HMM PF00535 YP_001067361.1 identified by match to protein family HMM PF00534 YP_001067362.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_001067363.1 identified by match to protein family HMM PF00953 YP_001067365.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001067366.1 identified by match to protein family HMM PF00953 YP_001067367.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001067368.1 identified by match to protein family HMM PF00535 YP_001067369.1 identified by match to protein family HMM PF00535 YP_001067370.1 identified by match to protein family HMM PF00535 YP_001067372.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001067373.1 identified by match to protein family HMM PF01757 YP_001067374.1 identified by match to protein family HMM PF00005 YP_001067375.1 identified by match to protein family HMM PF01061 YP_001067376.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01214 YP_001067377.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001067378.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001067379.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001067380.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_001067381.1 identified by match to protein family HMM PF01553 YP_001067382.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001067383.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001067384.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001067385.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001067386.1 identified by match to protein family HMM PF02622 YP_001067389.1 identified by match to protein family HMM PF00301 YP_001067391.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001067392.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001067401.1 identified by match to protein family HMM PF01638 YP_001067402.1 identified by match to protein family HMM PF00107 YP_001067406.1 identified by match to protein family HMM PF03922 YP_001067410.1 identified by match to protein family HMM PF01638; match to protein family HMM PF03551 YP_001067411.1 identified by match to protein family HMM PF00753 YP_001067412.1 identified by match to protein family HMM PF01381 YP_001067413.1 identified by match to protein family HMM PF00583 YP_001067414.1 identified by match to protein family HMM PF01810 YP_001067415.1 identified by match to protein family HMM PF03009 YP_001067416.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001067418.1 identified by match to protein family HMM PF01925 YP_001067419.1 identified by match to protein family HMM PF00450 YP_001067423.1 identified by match to protein family HMM PF04972 YP_001067426.1 identified by match to protein family HMM PF01323 YP_001067427.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067428.1 identified by match to protein family HMM PF01032 YP_001067429.1 identified by match to protein family HMM PF01497 YP_001067430.1 identified by match to protein family HMM PF00005 YP_001067431.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001067434.1 identified by match to protein family HMM PF01547 YP_001067436.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965 YP_001067437.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963 YP_001067439.1 identified by match to protein family HMM PF07690 YP_001067440.1 identified by match to protein family HMM PF00892 YP_001067441.1 identified by match to protein family HMM PF00165 YP_001067442.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001067444.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067445.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001067446.1 identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476 YP_001067447.1 identified by match to protein family HMM PF07690 YP_001067450.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266 YP_001067451.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_001067452.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001067454.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_001067455.1 identified by match to protein family HMM PF00753 YP_001067456.1 identified by match to protein family HMM PF00563 YP_001067458.1 identified by match to protein family HMM PF04828 YP_001067459.1 identified by match to protein family HMM PF01614 YP_001067460.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001067462.1 identified by match to protein family HMM PF00578 YP_001067463.1 identified by match to protein family HMM PF05957 YP_001067468.1 identified by match to protein family HMM TIGR02532 YP_001067470.1 identified by match to protein family HMM TIGR02532 YP_001067471.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001067472.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001067474.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001067475.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799 YP_001067476.1 identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796 YP_001067477.1 identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801 YP_001067478.1 identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794 YP_001067479.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_001067480.1 identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802 YP_001067481.1 identified by match to protein family HMM TIGR02795 YP_001067485.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001067486.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393 YP_001067487.1 identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670 YP_001067488.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001067490.1 identified by match to protein family HMM PF00534 YP_001067492.1 identified by match to protein family HMM PF00132 YP_001067493.1 identified by match to protein family HMM PF05159 YP_001067495.1 identified by match to protein family HMM PF02706; match to protein family HMM TIGR01005 YP_001067496.1 identified by match to protein family HMM PF01451 YP_001067497.1 identified by match to protein family HMM PF02563 YP_001067498.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025 YP_001067499.1 identified by match to protein family HMM PF00165 YP_001067502.1 identified by match to protein family HMM PF01569 YP_001067504.1 identified by match to protein family HMM PF02012 YP_001067506.1 identified by match to protein family HMM PF00155; match to protein family HMM PF01212 YP_001067507.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001067508.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001067509.1 identified by match to protein family HMM PF00884 YP_001067510.1 identified by match to protein family HMM PF00106 YP_001067511.1 identified by match to protein family HMM PF05159 YP_001067512.1 identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_001067513.1 identified by match to protein family HMM PF00483 YP_001067514.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_001067515.1 identified by match to protein family HMM PF00288 YP_001067516.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001067517.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001067519.1 identified by match to protein family HMM PF00534 YP_001067523.1 identified by match to protein family HMM PF00534 YP_001067526.1 identified by match to protein family HMM PF02563 YP_001067527.1 identified by match to protein family HMM PF00534 YP_001067529.1 identified by match to protein family HMM PF05159 YP_001067530.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001067531.1 identified by match to protein family HMM PF00310 YP_001067532.1 identified by match to protein family HMM PF00924 YP_001067534.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001067535.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001067536.1 identified by match to protein family HMM TIGR02246 YP_001067537.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001067539.1 identified by match to protein family HMM PF00308 YP_001067540.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001067541.1 identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942 YP_001067542.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_001067543.1 identified by match to protein family HMM PF01712 YP_001067544.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001067545.1 identified by match to protein family HMM PF00425 YP_001067546.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001067548.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001067550.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001067552.1 identified by match to protein family HMM PF01479 YP_001067553.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001067554.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001067555.1 catalyzes the phosphorylation of NAD to NADP YP_001067556.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001067557.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_001067558.1 identified by match to protein family HMM TIGR02099 YP_001067559.1 identified by match to protein family HMM PF00795 YP_001067560.1 identified by match to protein family HMM PF01523 YP_001067562.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001067563.1 identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001067565.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_001067566.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001067567.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001067568.1 identified by match to protein family HMM PF01565 YP_001067569.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_001067570.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001067571.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001067573.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_001067574.1 identified by match to protein family HMM TIGR01098 YP_001067575.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_001067576.1 identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318 YP_001067577.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324 YP_001067578.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323 YP_001067579.1 identified by match to protein family HMM PF06007 YP_001067580.1 identified by match to protein family HMM PF05861 YP_001067581.1 identified by match to protein family HMM PF05845 YP_001067582.1 identified by match to protein family HMM PF06754; match to protein family HMM TIGR03293 YP_001067584.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325 YP_001067586.1 identified by match to protein family HMM TIGR02322 YP_001067587.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_001067588.1 identified by match to protein family HMM PF01638 YP_001067590.1 identified by match to protein family HMM PF00210 YP_001067593.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_001067595.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067596.1 catalyzes branch migration in Holliday junction intermediates YP_001067597.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001067598.1 identified by match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449 YP_001067600.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001067601.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001067602.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001067605.1 identified by match to protein family HMM PF04264 YP_001067606.1 identified by match to protein family HMM PF04264 YP_001067607.1 identified by match to protein family HMM PF01292 YP_001067609.1 identified by match to protein family HMM PF04403 YP_001067610.1 identified by match to protein family HMM PF04403 YP_001067611.1 identified by match to protein family HMM PF02470 YP_001067612.1 identified by match to protein family HMM PF03886 YP_001067615.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_001067622.1 identified by match to protein family HMM PF02233 YP_001067624.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222 YP_001067625.1 identified by match to protein family HMM PF00293 YP_001067626.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001067627.1 identified by match to protein family HMM PF01645 YP_001067628.1 identified by match to protein family HMM PF01609 YP_001067629.1 identified by match to protein family HMM PF02798 YP_001067631.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_001067632.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_001067633.1 identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001067634.1 identified by match to protein family HMM PF02954 YP_001067635.1 involved in de novo purine biosynthesis YP_001067636.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_001067637.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001067638.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001067641.1 identified by match to protein family HMM PF00300 YP_001067642.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001067643.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001067645.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001067646.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001067647.1 identified by match to protein family HMM PF02798 YP_001067648.1 identified by match to protein family HMM PF00165 YP_001067649.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_001067650.1 forms a direct contact with the tRNA during translation YP_001067651.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001067652.1 identified by match to protein family HMM PF02566 YP_001067654.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001067656.1 identified by match to protein family HMM PF00310 YP_001067660.1 identified by match to protein family HMM PF00011 YP_001067661.1 identified by match to protein family HMM PF00011 YP_001067662.1 identified by match to protein family HMM PF00166 YP_001067665.1 identified by match to protein family HMM PF00005 YP_001067666.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001067667.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001067668.1 identified by match to protein family HMM PF00497 YP_001067669.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_001067671.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001067672.1 identified by match to protein family HMM PF07690 YP_001067673.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001067674.1 identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313 YP_001067675.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_001067678.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182 YP_001067679.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_001067681.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001067683.1 identified by match to protein family HMM PF03653 YP_001067684.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001067685.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001067687.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001067688.1 identified by match to protein family HMM PF02472 YP_001067689.1 identified by match to protein family HMM PF01618 YP_001067690.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001067691.1 identified by match to protein family HMM PF04355 YP_001067692.1 identified by match to protein family HMM PF01475 YP_001067693.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_001067694.3 catalyzes the formation of S-ureidoglycolate and urea from allantoate YP_001067695.1 involved in the transport of C4-dicarboxylates across the membrane YP_001067696.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001067699.1 controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source YP_001067700.1 identified by match to protein family HMM PF00484 YP_001067701.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_001067702.1 identified by match to protein family HMM PF07690 YP_001067704.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001067705.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_001067707.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001067708.1 identified by match to protein family HMM PF00903 YP_001067709.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001067712.1 identified by match to protein family HMM PF00545 YP_001067713.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_001067714.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_001067715.1 identified by match to protein family HMM PF04608 YP_001067716.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_001067718.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001067719.1 identified by match to protein family HMM PF01263 YP_001067720.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001067721.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001067722.1 Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose YP_001067723.1 identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409 YP_001067724.1 identified by match to protein family HMM PF00106 YP_001067725.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_001067726.1 identified by match to protein family HMM PF05035 YP_001067727.1 identified by match to protein family HMM PF01614 YP_001067729.1 identified by match to protein family HMM PF00450 YP_001067732.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_001067733.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001067734.1 identified by match to protein family HMM PF00773 YP_001067735.1 identified by match to protein family HMM PF05728 YP_001067736.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081 YP_001067739.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001067740.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001067741.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001067742.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001067743.1 identified by match to protein family HMM TIGR02098 YP_001067745.1 identified by match to protein family HMM PF00294 YP_001067746.1 identified by match to protein family HMM PF05433 YP_001067748.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001067749.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001067751.1 identified by match to protein family HMM PF01510 YP_001067753.1 identified by match to protein family HMM PF01578 YP_001067754.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001067755.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively YP_001067756.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001067757.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001067758.1 hydrolyzes diadenosine polyphosphate YP_001067760.3 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001067761.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001067762.1 involved in the peptidyltransferase reaction during translation YP_001067763.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001067764.1 identified by match to protein family HMM PF00348 YP_001067765.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001067767.1 identified by match to protein family HMM PF00437 YP_001067768.1 identified by match to protein family HMM PF00482 YP_001067769.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001067770.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001067771.1 identified by match to protein family HMM PF07072 YP_001067772.1 identified by match to protein family HMM PF03884 YP_001067773.1 identified by match to protein family HMM PF00293 YP_001067774.1 identified by match to protein family HMM PF05673 YP_001067775.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001067776.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001067779.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001067781.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001067782.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001067783.1 identified by match to protein family HMM PF03799 YP_001067784.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001067785.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001067786.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001067787.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614 YP_001067788.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001067789.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001067790.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143 YP_001067791.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001067792.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001067793.1 identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209 YP_001067794.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001067795.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001067797.1 identified by match to protein family HMM PF00267 YP_001067798.1 identified by match to protein family HMM PF01609 YP_001067799.1 activates fatty acids by binding to coenzyme A YP_001067800.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001067803.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001067804.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288 YP_001067805.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001067806.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001067807.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; match to protein family HMM TIGR02286 YP_001067808.1 identified by match to protein family HMM TIGR02155 YP_001067809.1 identified by match to protein family HMM PF03562; match to protein family HMM PF06725 YP_001067810.1 protein associated with Co2+ and Mg2+ efflux YP_001067812.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001067813.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001067814.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_001067815.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001067816.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001067817.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001067818.1 identified by match to protein family HMM PF01928 YP_001067819.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001067820.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_001067821.1 identified by match to protein family HMM PF05299 YP_001067823.1 identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988 YP_001067827.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001067829.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957 YP_001067831.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773 YP_001067834.1 identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409 YP_001067836.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001067838.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001067839.1 identified by match to protein family HMM PF00857 YP_001067840.1 identified by match to protein family HMM PF00557 YP_001067844.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001067845.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001067846.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536 YP_001067847.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365 YP_001067848.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_001067849.1 identified by match to protein family HMM PF02900 YP_001067850.1 identified by match to protein family HMM PF00324 YP_001067852.1 identified by match to protein family HMM PF00313 YP_001067856.1 identified by match to protein family HMM PF00881 YP_001067858.1 identified by match to protein family HMM PF07690 YP_001067859.1 identified by match to protein family HMM PF00440 YP_001067860.1 identified by match to protein family HMM PF07209 YP_001067862.1 identified by match to protein family HMM PF05175 YP_001067864.1 identified by match to protein family HMM PF01757 YP_001067868.1 identified by match to protein family HMM PF01433 YP_001067873.1 identified by match to protein family HMM PF00529 YP_001067874.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_001067875.1 identified by match to protein family HMM PF02321 YP_001067878.1 identified by match to protein family HMM PF02557 YP_001067881.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001067883.1 identified by match to protein family HMM PF00691 YP_001067884.1 identified by match to protein family HMM PF06812 YP_001067885.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001067886.1 identified by match to protein family HMM PF06996 YP_001067887.1 identified by match to protein family HMM PF05947 YP_001067888.1 identified by match to protein family HMM PF07025 YP_001067889.1 identified by match to protein family HMM PF05638 YP_001067890.1 identified by match to protein family HMM PF05943 YP_001067891.1 identified by match to protein family HMM PF05591 YP_001067892.1 identified by match to protein family HMM PF07719 YP_001067895.1 identified by match to protein family HMM PF05936 YP_001067899.1 identified by match to protein family HMM TIGR01634 YP_001067901.1 identified by match to protein family HMM PF01610 YP_001067902.1 identified by match to protein family HMM PF05488 YP_001067906.1 identified by match to protein family HMM PF00271 YP_001067908.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_001067911.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_001067912.1 identified by match to protein family HMM PF00145 YP_001067913.1 identified by match to protein family HMM PF05930; match to protein family HMM TIGR01764 YP_001067918.1 identified by match to protein family HMM PF01609 YP_001067922.1 identified by match to protein family HMM PF01381 YP_001067929.1 identified by match to protein family HMM PF05930 YP_001067931.1 identified by match to protein family HMM PF01609 YP_001067933.1 identified by match to protein family HMM PF04386 YP_001067934.1 identified by match to protein family HMM PF00462; match to protein family HMM PF02798 YP_001067935.1 identified by match to protein family HMM PF02167 YP_001067936.1 identified by match to protein family HMM PF00033 YP_001067937.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416 YP_001067938.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001067939.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001067941.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_001067942.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410 YP_001067943.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_001067944.1 identified by match to protein family HMM PF01230 YP_001067946.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_001067947.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001067948.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001067949.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001067950.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001067951.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001067952.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001067953.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001067954.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001067955.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001067956.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001067957.1 identified by match to protein family HMM PF01722 YP_001067958.1 identified by match to protein family HMM PF01061 YP_001067959.1 identified by match to protein family HMM PF00005 YP_001067961.1 identified by match to protein family HMM PF05494 YP_001067962.1 identified by match to protein family HMM PF04333 YP_001067963.1 identified by match to protein family HMM PF02470 YP_001067964.1 identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056 YP_001067965.1 identified by match to protein family HMM PF00005 YP_001067966.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_001067967.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001067968.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_001067969.1 identified by match to protein family HMM PF01266 YP_001067971.2 identified by match to protein family HMM PF00005 YP_001067973.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_001067974.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001067976.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001067977.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_001067979.1 identified by match to protein family HMM PF07605 YP_001067980.1 identified by match to protein family HMM PF03922 YP_001067981.1 hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate YP_001067982.1 part of the UgpABCE glycerol-3-phosphate uptake system YP_001067983.1 with UgpABC is involved in uptake of glycerol-3-phosphate YP_001067984.1 identified by match to protein family HMM PF00528 YP_001067985.1 with UgpACE is involved in the uptake of glycerol-3-phosphate YP_001067986.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001067987.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001067988.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001067989.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515 YP_001067991.1 identified by match to protein family HMM PF05137 YP_001067993.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001067994.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_001067996.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001067998.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme YP_001067999.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_001068000.1 identified by match to protein family HMM PF01578 YP_001068001.1 identified by match to protein family HMM PF05140 YP_001068002.1 identified by match to protein family HMM PF00034 YP_001068003.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001068004.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001068005.1 identified by match to protein family HMM PF00085; match to protein family HMM PF02683 YP_001068006.1 identified by match to protein family HMM PF03091 YP_001068007.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001068008.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001068009.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001068010.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001068011.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001068012.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001068013.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001068014.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001068015.1 late assembly protein YP_001068016.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001068017.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001068018.1 binds 5S rRNA along with protein L5 and L25 YP_001068019.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001068020.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001068021.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001068022.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001068023.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001068024.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001068025.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001068026.1 one of the stabilizing components for the large ribosomal subunit YP_001068027.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001068028.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001068029.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001068030.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001068031.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001068032.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001068033.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001068034.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001068035.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001068036.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001068037.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001068038.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001068039.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001068040.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001068043.1 identified by match to protein family HMM PF01527 YP_001068044.1 identified by match to protein family HMM PF00665 YP_001068045.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001068046.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001068047.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001068048.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001068049.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001068050.1 binds directly to 23S ribosomal RNA YP_001068051.1 Modulates Rho-dependent transcription termination YP_001068052.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001068053.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001068056.1 identified by match to protein family HMM PF00657 YP_001068057.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA YP_001068058.1 with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation YP_001068059.1 identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158 YP_001068060.1 identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159 YP_001068061.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160 YP_001068063.1 identified by match to protein family HMM PF00440 YP_001068064.1 identified by match to protein family HMM PF00583 YP_001068065.1 identified by match to protein family HMM PF01037 YP_001068066.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_001068068.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_001068070.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001068072.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001068073.1 identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481 YP_001068075.1 identified by match to protein family HMM PF00258 YP_001068076.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001068079.1 identified by match to protein family HMM PF03922 YP_001068080.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001068081.1 identified by match to protein family HMM PF07690 YP_001068082.1 identified by match to protein family HMM PF01810 YP_001068083.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_001068084.1 identified by match to protein family HMM PF01927 YP_001068095.1 identified by match to protein family HMM PF00324 YP_001068098.1 identified by match to protein family HMM PF00665 YP_001068099.1 identified by match to protein family HMM PF01527 YP_001068100.1 identified by match to protein family HMM PF03865 YP_001068101.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_001068103.1 identified by match to protein family HMM PF01527 YP_001068104.1 identified by match to protein family HMM PF00665 YP_001068106.1 identified by match to protein family HMM PF01527 YP_001068107.1 identified by match to protein family HMM PF00665 YP_001068110.1 identified by match to protein family HMM PF01609 YP_001068112.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001068113.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001068117.1 identified by match to protein family HMM PF00034 YP_001068118.1 identified by match to protein family HMM PF04972 YP_001068119.1 identified by match to protein family HMM TIGR00441 YP_001068120.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252 YP_001068121.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001068122.1 identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413 YP_001068123.1 identified by match to protein family HMM PF00753 YP_001068126.1 identified by match to protein family HMM PF01037 YP_001068127.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001068129.1 identified by match to protein family HMM PF00816 YP_001068130.1 identified by match to protein family HMM PF01243 YP_001068131.1 identified by match to protein family HMM PF07690 YP_001068132.1 identified by match to protein family HMM PF01094 YP_001068133.1 identified by match to protein family HMM PF03060 YP_001068135.1 identified by match to protein family HMM PF01738 YP_001068136.1 identified by match to protein family HMM PF01425 YP_001068137.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001068138.1 identified by match to protein family HMM PF04020 YP_001068139.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001068141.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes YP_001068143.1 positive regulator of class III flagellar genes YP_001068144.1 membrane protein involved in the flagellar export apparatus YP_001068145.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001068146.1 identified by match to protein family HMM PF06983 YP_001068149.1 cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation YP_001068150.1 identified by match to protein family HMM PF00072 YP_001068151.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001068152.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001068153.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001068154.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001068155.1 identified by match to protein family HMM PF01584 YP_001068156.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895 YP_001068157.1 identified by match to protein family HMM PF00072 YP_001068158.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001068159.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001068160.1 With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems YP_001068161.1 with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems YP_001068162.1 identified by match to protein family HMM PF00534 YP_001068165.1 porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure YP_001068166.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001068167.1 identified by match to protein family HMM PF01869 YP_001068168.1 identified by match to protein family HMM PF03352 YP_001068170.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001068172.1 structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus YP_001068173.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_001068175.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001068176.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001068180.1 identified by match to protein family HMM PF00106 YP_001068181.1 identified by match to protein family HMM PF00132 YP_001068182.1 identified by match to protein family HMM PF00355 YP_001068185.1 identified by match to protein family HMM PF01810 YP_001068186.1 identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409 YP_001068188.1 identified by match to protein family HMM PF05643 YP_001068190.1 identified by match to protein family HMM PF03783 YP_001068194.1 identified by match to protein family HMM PF00561 YP_001068195.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001068198.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001068199.1 identified by match to protein family HMM PF03067 YP_001068204.1 identified by match to protein family HMM PF01609 YP_001068208.1 identified by match to protein family HMM PF00034 YP_001068210.1 identified by match to protein family HMM PF00580 YP_001068212.1 identified by match to protein family HMM PF00657 YP_001068213.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001068216.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001068217.1 identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527 YP_001068218.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_001068221.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_001068223.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_001068225.1 identified by match to protein family HMM PF00165 YP_001068227.1 identified by match to protein family HMM PF00171 YP_001068229.1 catalyzes the formation of acetaldehyde from ethanolamine YP_001068230.1 identified by match to protein family HMM PF06751 YP_001068231.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908 YP_001068233.1 identified by match to protein family HMM PF01757 YP_001068235.1 identified by match to protein family HMM PF05552 YP_001068238.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001068239.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02047 YP_001068240.1 identified by match to protein family HMM PF03551 YP_001068244.1 identified by match to protein family HMM PF00497 YP_001068245.1 catalyzes the transfer of an amino moiety YP_001068247.1 identified by match to protein family HMM PF00440 YP_001068248.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001068249.1 identified by match to protein family HMM PF00501 YP_001068250.1 identified by match to protein family HMM PF01094 YP_001068251.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein YP_001068254.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001068255.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001068256.1 identified by match to protein family HMM PF00497 YP_001068257.1 identified by match to protein family HMM PF02629 YP_001068259.1 activates fatty acids by binding to coenzyme A YP_001068260.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001068261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001068262.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001068263.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001068264.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001068265.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001068266.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001068267.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001068271.1 identified by match to protein family HMM PF03600 YP_001068272.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001068273.1 identified by match to protein family HMM PF01656 YP_001068274.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001068275.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001068276.1 identified by match to protein family HMM PF00005 YP_001068277.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02653 YP_001068278.1 identified by match to protein family HMM PF02653 YP_001068279.1 identified by match to protein family HMM PF01094 YP_001068281.1 identified by match to protein family HMM PF02653 YP_001068282.1 identified by match to protein family HMM PF02653 YP_001068285.1 identified by match to protein family HMM PF00005 YP_001068286.1 identified by match to protein family HMM PF00005 YP_001068288.1 identified by match to protein family HMM PF00732; match to protein family HMM PF05199 YP_001068289.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001068291.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001068292.1 identified by match to protein family HMM PF01928 YP_001068293.1 identified by match to protein family HMM PF01037 YP_001068294.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_001068295.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction YP_001068297.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001068298.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001068300.1 identified by match to protein family HMM PF00856 YP_001068301.1 identified by match to protein family HMM PF00724 YP_001068302.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001068303.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047 YP_001074045.1 identified by match to protein family HMM PF00589 YP_001074047.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001074048.3 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_001074049.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_001074051.1 identified by match to protein family HMM PF04264 YP_001074053.1 identified by match to protein family HMM PF00440 YP_001074054.2 identified by match to protein family HMM PF07080 YP_001074056.1 identified by match to protein family HMM PF04952 YP_001074057.1 identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089 YP_001074058.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074059.1 identified by match to protein family HMM PF04140 YP_001074060.1 identified by match to protein family HMM PF02798 YP_001074063.1 identified by match to protein family HMM PF01734 YP_001074064.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001074065.1 converts acetoacetate to acetone and carbon dioxide YP_001074066.1 identified by match to protein family HMM PF01569 YP_001074070.1 identified by match to protein family HMM PF04954; match to protein family HMM PF08021 YP_001074071.1 identified by match to protein family HMM PF03551 YP_001074072.1 identified by match to protein family HMM PF00067 YP_001074074.1 identified by match to protein family HMM PF01261; match to protein family HMM PF05114 YP_001074076.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001074078.1 identified by match to protein family HMM PF01810 YP_001074079.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_001074080.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001074081.1 identified by match to protein family HMM PF00582 YP_001074086.1 identified by match to protein family HMM PF00171 YP_001074087.1 identified by match to protein family HMM PF03758 YP_001074092.1 identified by match to protein family HMM PF00132 YP_001074093.1 identified by match to protein family HMM PF00106 YP_001074094.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001074095.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074096.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_001074097.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001074098.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001074099.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_001074100.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427 YP_001074101.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425 YP_001074102.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001074104.1 identified by match to protein family HMM PF01810 YP_001074106.1 identified by match to protein family HMM PF07485 YP_001074107.1 identified by match to protein family HMM PF07690 YP_001074110.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_001074114.1 identified by match to protein family HMM PF00127 YP_001074115.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001074116.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630 YP_001074118.1 identified by match to protein family HMM PF03693 YP_001074122.1 identified by match to protein family HMM PF00816 YP_001074124.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001074125.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001074126.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001074131.1 identified by match to protein family HMM PF00165 YP_001074134.1 identified by match to protein family HMM PF04185; match to protein family HMM PF05506 YP_001074141.1 identified by match to protein family HMM PF01547 YP_001074142.1 identified by match to protein family HMM PF00816 YP_001074143.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001074146.1 identified by match to protein family HMM PF05488 YP_001074148.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149 YP_001074149.1 identified by match to protein family HMM PF00085 YP_001074155.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_001074165.1 identified by match to protein family HMM TIGR03304 YP_001074168.2 identified by match to protein family HMM PF07437 YP_001074169.1 identified by match to protein family HMM PF00419 YP_001074170.1 identified by match to protein family HMM PF00345; match to protein family HMM PF02753 YP_001074171.1 identified by match to protein family HMM PF00577 YP_001074172.1 identified by match to protein family HMM PF00419 YP_001074174.1 identified by match to protein family HMM PF00691 YP_001074176.1 identified by match to protein family HMM PF05591 YP_001074177.1 identified by match to protein family HMM PF05943 YP_001074179.1 identified by match to protein family HMM PF05638 YP_001074181.1 identified by match to protein family HMM PF05936 YP_001074182.1 identified by match to protein family HMM PF00691 YP_001074183.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001074186.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001074187.1 identified by match to protein family HMM PF05488 YP_001074188.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001074191.1 identified by match to protein family HMM PF06812 YP_001074192.1 identified by match to protein family HMM PF06996 YP_001074193.1 identified by match to protein family HMM PF05947 YP_001074194.1 identified by match to protein family HMM PF07025 YP_001074195.1 identified by match to protein family HMM PF07024 YP_001074199.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001074202.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001074204.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001074206.1 identified by match to protein family HMM PF00577 YP_001074207.1 member of the periplasmic pilus chaperone family of proteins YP_001074210.1 identified by match to protein family HMM PF06551 YP_001074212.1 identified by match to protein family HMM PF00196 YP_001074214.1 identified by match to protein family HMM PF00816 YP_001074215.1 identified by match to protein family HMM PF07690 YP_001074216.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001074217.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001074218.1 identified by match to protein family HMM PF02954; match to protein family HMM PF05651 YP_001074221.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00975 YP_001074222.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001074223.1 identified by match to protein family HMM PF07366; match to protein family HMM PF07858 YP_001074225.1 identified by match to protein family HMM PF00891 YP_001074226.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074228.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001074237.1 Enables the enzymatic reduction of mercuric ions to elemental mercury YP_001074238.1 identified by match to protein family HMM PF00532 YP_001074239.1 identified by match to protein family HMM PF02653 YP_001074240.1 identified by match to protein family HMM PF00005 YP_001074241.1 identified by match to protein family HMM PF00480 YP_001074243.1 identified by match to protein family HMM PF00686; match to protein family HMM PF00723 YP_001074245.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA YP_001074247.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001074248.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001074249.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074252.1 identified by match to protein family HMM PF00487 YP_001074257.1 identified by match to protein family HMM PF00497 YP_001074258.1 identified by match to protein family HMM PF01266 YP_001074260.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074262.1 identified by match to protein family HMM PF00106 YP_001074269.1 identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180 YP_001074271.1 identified by match to protein family HMM PF05141 YP_001074272.1 identified by match to protein family HMM PF02668 YP_001074273.1 identified by match to protein family HMM PF03241 YP_001074274.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001074275.1 identified by match to protein family HMM PF00107 YP_001074276.1 identified by match to protein family HMM PF02900 YP_001074277.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074279.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001074280.1 identified by match to protein family HMM PF00691 YP_001074281.1 identified by match to protein family HMM PF05936 YP_001074284.1 identified by match to protein family HMM PF05638 YP_001074285.1 identified by match to protein family HMM PF05943 YP_001074286.1 identified by match to protein family HMM PF05591 YP_001074287.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001074289.1 identified by match to protein family HMM PF07024 YP_001074290.1 identified by match to protein family HMM PF07025 YP_001074291.1 identified by match to protein family HMM PF05947 YP_001074292.1 identified by match to protein family HMM PF06996 YP_001074293.2 identified by match to protein family HMM PF06812 YP_001074294.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001074295.1 identified by match to protein family HMM PF00805 YP_001074296.1 identified by match to protein family HMM PF00805 YP_001074303.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074304.1 identified by match to protein family HMM PF02525 YP_001074305.1 identified by match to protein family HMM PF00165 YP_001074306.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001074307.1 identified by match to protein family HMM PF00903 YP_001074313.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_001074314.1 identified by match to protein family HMM PF02682 YP_001074315.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001074316.1 identified by match to protein family HMM PF00364 YP_001074317.1 identified by match to protein family HMM PF03746 YP_001074318.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074321.1 identified by match to protein family HMM PF01804 YP_001074322.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249 YP_001074328.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001074330.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728; match to protein family HMM TIGR02329 YP_001074331.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_001074332.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity YP_001074333.1 Catalyzes the conversion of citrate to isocitrate YP_001074334.1 identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334 YP_001074335.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001074341.1 identified by match to protein family HMM PF04055 YP_001074343.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203 YP_001074347.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074348.1 identified by match to protein family HMM PF07221 YP_001074349.1 identified by match to protein family HMM PF02308 YP_001074355.1 identified by match to protein family HMM PF00583 YP_001074359.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001074362.1 identified by match to protein family HMM PF06742; match to protein family HMM PF06863 YP_001074364.1 identified by match to protein family HMM PF05359 YP_001074366.1 identified by match to protein family HMM PF01663 YP_001074368.1 identified by match to protein family HMM PF00903 YP_001074370.1 identified by match to protein family HMM PF00494 YP_001074377.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001074378.1 identified by match to protein family HMM PF01654 YP_001074379.1 identified by match to protein family HMM PF01212 YP_001074380.1 specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport YP_001074382.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001074383.1 identified by match to protein family HMM PF03458 YP_001074384.1 with HmuTU is involved in the import of hemin YP_001074386.1 identified by match to protein family HMM PF01032 YP_001074388.1 identified by match to protein family HMM PF01497 YP_001074389.1 identified by match to protein family HMM PF05171 YP_001074390.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786 YP_001074393.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074395.1 identified by match to protein family HMM PF00528 YP_001074396.1 identified by match to protein family HMM PF00005 YP_001074398.1 identified by match to protein family HMM PF00528 YP_001074399.1 identified by match to protein family HMM TIGR00725 YP_001074400.1 identified by match to protein family HMM PF00267 YP_001074401.1 identified by match to protein family HMM PF04198 YP_001074402.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_001074403.1 identified by match to protein family HMM PF00005 YP_001074404.1 identified by match to protein family HMM PF02653 YP_001074405.1 identified by match to protein family HMM PF00532 YP_001074406.1 identified by match to protein family HMM PF00106 YP_001074407.1 identified by match to protein family HMM PF00107 YP_001074408.1 identified by match to protein family HMM PF02733 YP_001074409.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_001074413.1 identified by match to protein family HMM PF00267 YP_001074414.1 identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363 YP_001074417.1 identified by match to protein family HMM PF04952 YP_001074418.1 identified by match to protein family HMM PF01757 YP_001074419.1 identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096 YP_001074420.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074421.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001074423.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001074424.1 identified by match to protein family HMM PF00440 YP_001074425.1 identified by match to protein family HMM PF01614; match to protein family HMM TIGR02431 YP_001074427.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_001074430.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM TIGR00229 YP_001074431.1 identified by match to protein family HMM PF00891 YP_001074433.1 identified by match to protein family HMM PF00355 YP_001074438.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_001074439.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700 YP_001074440.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001074441.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606 YP_001074442.1 identified by match to protein family HMM PF01614 YP_001074443.1 identified by match to protein family HMM PF05013 YP_001074447.1 identified by match to protein family HMM PF00892 YP_001074448.1 catalyzes the formation of selenophosphate from selenide and ATP YP_001074452.1 identified by match to protein family HMM PF06516 YP_001074457.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074458.1 identified by match to protein family HMM PF07859 YP_001074459.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001074460.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915 YP_001074461.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001074464.1 identified by match to protein family HMM PF00375 YP_001074465.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001074466.1 identified by match to protein family HMM PF00583 YP_001074468.1 identified by match to protein family HMM PF03547 YP_001074470.1 identified by match to protein family HMM PF00501 YP_001074471.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001074473.1 identified by match to protein family HMM PF00501 YP_001074474.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784 YP_001074476.1 identified by match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_001074477.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01746 YP_001074478.3 catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation YP_001074479.1 identified by match to protein family HMM PF00202 YP_001074483.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801 YP_001074487.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001074489.1 identified by match to protein family HMM PF03180 YP_001074491.1 identified by match to protein family HMM PF00005 YP_001074492.1 identified by match to protein family HMM PF00528 YP_001074496.1 identified by match to protein family HMM PF00441; match to protein family HMM PF08028 YP_001074500.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001074501.1 identified by match to protein family HMM PF02754 YP_001074502.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273 YP_001074503.1 identified by match to protein family HMM PF02589 YP_001074504.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_001074506.1 identified by match to protein family HMM PF07681 YP_001074508.1 identified by match to protein family HMM PF07690 YP_001074509.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001074510.1 identified by match to protein family HMM PF02615 YP_001074511.1 identified by match to protein family HMM PF00171 YP_001074512.1 identified by match to protein family HMM PF00324 YP_001074514.1 identified by match to protein family HMM PF00701 YP_001074516.1 identified by match to protein family HMM PF05544 YP_001074517.1 identified by match to protein family HMM PF01266 YP_001074518.1 identified by match to protein family HMM PF00111; similar to sarcosine oxidase and hydrogen cyanide synthase YP_001074519.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; match to protein family HMM PF07992 YP_001074520.1 identified by match to protein family HMM PF00165 YP_001074523.1 identified by match to protein family HMM PF00903; match to protein family HMM PF01261 YP_001074524.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001074525.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001074526.1 identified by match to protein family HMM PF07690 YP_001074527.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_001074529.1 identified by match to protein family HMM PF01547 YP_001074530.1 identified by match to protein family HMM PF00005 YP_001074531.1 identified by match to protein family HMM PF00528 YP_001074532.1 identified by match to protein family HMM PF00528 YP_001074533.1 identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335 YP_001074534.1 identified by match to protein family HMM PF00171 YP_001074536.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR02044 YP_001074540.1 identified by match to protein family HMM PF04378 YP_001074541.1 identified by match to protein family HMM PF00248 YP_001074542.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001074543.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001074544.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001074547.1 identified by match to protein family HMM PF03239 YP_001074549.1 identified by match to protein family HMM PF03928 YP_001074554.1 identified by match to protein family HMM PF02678; match to protein family HMM PF05726 YP_001074555.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074557.1 identified by match to protein family HMM PF02472 YP_001074558.1 identified by match to protein family HMM PF01618 YP_001074559.1 identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352 YP_001074560.1 identified by match to protein family HMM PF04324 YP_001074561.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001074562.1 identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754 YP_001074564.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_001074565.1 identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645 YP_001074566.1 identified by match to protein family HMM PF00892 YP_001074567.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001074569.1 identified by match to protein family HMM PF00474 YP_001074570.1 identified by match to protein family HMM PF00665 YP_001074585.1 identified by match to protein family HMM PF00149 YP_001074586.1 identified by match to protein family HMM PF03150 YP_001074590.1 identified by match to protein family HMM PF00665 YP_001074592.1 identified by match to protein family HMM PF01476 YP_001074597.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001074598.1 identified by match to protein family HMM PF06082 YP_001074602.1 identified by match to protein family HMM PF02563 YP_001074603.1 identified by match to protein family HMM PF02706 YP_001074604.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_001074605.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622 YP_001074606.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001074607.1 identified by match to protein family HMM PF00583; match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212 YP_001074610.1 identified by match to protein family HMM PF00535 YP_001074612.1 identified by match to protein family HMM PF01075 YP_001074613.1 identified by match to protein family HMM PF01075 YP_001074614.1 identified by match to protein family HMM PF00132 YP_001074615.1 identified by match to protein family HMM PF00535 YP_001074619.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074620.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_001074622.1 identified by match to protein family HMM PF06912 YP_001074623.1 identified by match to protein family HMM PF00027; match to protein family HMM PF07992 YP_001074624.1 identified by match to protein family HMM PF00165 YP_001074625.1 identified by match to protein family HMM PF00165 YP_001074627.1 identified by match to protein family HMM PF07690 YP_001074629.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074630.1 identified by match to protein family HMM PF00857 YP_001074633.1 identified by match to protein family HMM PF07235 YP_001074634.1 identified by match to protein family HMM PF07969 YP_001074639.1 identified by match to protein family HMM PF00561 YP_001074642.1 identified by match to protein family HMM PF01613 YP_001074644.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; match to protein family HMM PF01212 YP_001074645.1 identified by match to protein family HMM PF01965 YP_001074647.1 identified by match to protein family HMM PF00768 YP_001074654.1 identified by match to protein family HMM PF02811 YP_001074657.1 identified by match to protein family HMM PF02321 YP_001074658.1 identified by match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409 YP_001074660.1 identified by match to protein family HMM PF04234 YP_001074661.1 identified by match to protein family HMM PF05425 YP_001074663.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001074664.1 identified by match to protein family HMM PF01266 YP_001074665.1 identified by match to protein family HMM PF01266 YP_001074667.1 identified by match to protein family HMM PF00528 YP_001074668.1 identified by match to protein family HMM PF00528 YP_001074669.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001074670.1 identified by match to protein family HMM PF01547 YP_001074671.1 identified by match to protein family HMM PF00202 YP_001074672.1 identified by match to protein family HMM PF00120 YP_001074673.1 identified by match to protein family HMM PF07722 YP_001074677.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001074678.1 identified by match to protein family HMM PF00171 YP_001074679.1 catalyzes the formation of putrescine from agmatine YP_001074681.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001074682.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_001074683.1 identified by match to protein family HMM PF05232 YP_001074685.1 identified by match to protein family HMM PF02867; match to protein family HMM TIGR02504 YP_001074689.1 identified by match to protein family HMM PF00501 YP_001074692.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_001074693.1 identified by match to protein family HMM PF00753 YP_001074694.1 identified by match to protein family HMM PF00441; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001074702.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR03140 YP_001074703.1 identified by match to protein family HMM PF00578 YP_001074705.1 identified by match to protein family HMM PF03067 YP_001074707.1 identified by match to protein family HMM PF00881 YP_001074710.1 identified by match to protein family HMM PF04169; match to protein family HMM PF04174 YP_001074711.1 identified by match to protein family HMM PF04168 YP_001074712.1 identified by match to protein family HMM PF01841 YP_001074714.1 identified by match to protein family HMM PF01841 YP_001074716.1 identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174 YP_001074717.1 identified by match to protein family HMM PF01841 YP_001074718.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001074719.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_001074723.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001074724.1 identified by match to protein family HMM PF01965 YP_001074725.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212 YP_001074726.1 identified by match to protein family HMM PF02775 YP_001074727.1 identified by match to protein family HMM TIGR02320 YP_001074729.1 identified by match to protein family HMM TIGR00374 YP_001074730.1 identified by match to protein family HMM PF03171 YP_001074731.1 identified by match to protein family HMM PF01066 YP_001074732.1 identified by match to protein family HMM PF02550 YP_001074735.1 identified by match to protein family HMM PF06812 YP_001074736.1 identified by match to protein family HMM PF05591 YP_001074737.1 identified by match to protein family HMM PF05943 YP_001074738.1 identified by match to protein family HMM PF05638 YP_001074740.1 identified by match to protein family HMM PF05947 YP_001074742.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001074743.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001074745.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001074746.1 identified by match to protein family HMM PF00805 YP_001074751.1 identified by match to protein family HMM PF05936 YP_001074752.1 identified by match to protein family HMM PF00691 YP_001074753.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001074762.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001074764.1 identified by match to protein family HMM TIGR01556 YP_001074766.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001074768.1 identified by match to protein family HMM PF00529 YP_001074770.1 identified by match to protein family HMM PF00251 YP_001074771.1 identified by match to protein family HMM PF02435 YP_001074773.1 identified by match to protein family HMM PF00532 YP_001074774.1 identified by match to protein family HMM PF00107; match to protein family HMM TIGR02819 YP_001074775.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001074776.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001074777.1 identified by match to protein family HMM PF01244 YP_001074778.1 identified by match to protein family HMM PF02830 YP_001074779.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001074780.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754 YP_001074781.1 identified by match to protein family HMM PF00766 YP_001074783.1 identified by match to protein family HMM PF00355 YP_001074784.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001074785.1 identified by match to protein family HMM PF04069 YP_001074786.1 identified by match to protein family HMM PF00324 YP_001074787.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001074788.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074789.1 identified by match to protein family HMM PF00884 YP_001074790.1 identified by match to protein family HMM PF04069 YP_001074792.1 identified by match to protein family HMM PF00267 YP_001074793.1 identified by match to protein family HMM PF01546; match to protein family HMM PF04389 YP_001074794.1 identified by match to protein family HMM PF07504 YP_001074795.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001074796.1 identified by match to protein family HMM PF04069 YP_001074797.1 identified by match to protein family HMM PF05853 YP_001074798.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001074800.1 identified by match to protein family HMM PF07859 YP_001074802.1 identified by match to protein family HMM PF00106 YP_001074806.1 identified by match to protein family HMM PF01266 YP_001074807.1 identified by match to protein family HMM PF01094 YP_001074809.1 identified by match to protein family HMM PF02653 YP_001074810.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_001074811.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine YP_001074812.1 identified by match to protein family HMM PF00005 YP_001074815.1 identified by match to protein family HMM PF01551 YP_001074817.1 involved in the conversion of chorismate to salicylate YP_001074818.1 catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate. YP_001074819.1 identified by match to protein family HMM PF00975 YP_001074820.1 identified by match to protein family HMM PF00501 YP_001074822.1 identified by match to protein family HMM PF00165 YP_001074823.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001074824.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_001074825.1 identified by match to protein family HMM PF01408; match to protein family HMM TIGR01761 YP_001074826.1 identified by match to protein family HMM PF00005 YP_001074827.1 identified by match to protein family HMM PF00005 YP_001074829.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001074831.1 identified by match to protein family HMM PF03929 YP_001074832.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR02718 YP_001074834.1 identified by match to protein family HMM PF00111 YP_001074836.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001074842.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001074843.1 identified by match to protein family HMM TIGR02594 YP_001074849.1 identified by match to protein family HMM PF01925 YP_001074850.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001074851.1 identified by match to protein family HMM PF00171 YP_001074852.1 identified by match to protein family HMM PF02668 YP_001074853.1 identified by match to protein family HMM PF02775 YP_001074856.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00561 YP_001074859.1 identified by match to protein family HMM PF01145 YP_001074860.1 identified by match to protein family HMM PF01957 YP_001074861.1 identified by match to protein family HMM PF00165 YP_001074862.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001074863.1 identified by match to protein family HMM PF00501 YP_001074864.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001074865.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692 YP_001074866.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001074867.1 identified by match to protein family HMM PF00378 YP_001074870.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001074871.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687 YP_001074872.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001074874.1 identified by match to protein family HMM PF00296 YP_001074876.1 identified by match to protein family HMM PF00445 YP_001074878.1 catalyzes the formation of glutamate from glutamine YP_001074880.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001074881.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001074882.3 identified by match to protein family HMM PF01734; match to protein family HMM PF07244 YP_001074885.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001074887.1 identified by match to protein family HMM PF01966 YP_001074888.1 identified by match to protein family HMM PF06202 YP_001074893.1 identified by match to protein family HMM PF00903 YP_001074894.1 identified by match to protein family HMM PF00043; match to protein family HMM PF02798 YP_001074895.1 identified by match to protein family HMM PF05988 YP_001074901.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001074902.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001074903.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001074907.1 identified by match to protein family HMM PF00581 YP_001074908.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism YP_001074911.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_001074913.1 identified by match to protein family HMM PF04993 YP_001074914.1 identified by match to protein family HMM PF07298 YP_001074918.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_001074919.1 identified by match to protein family HMM PF00450 YP_001074926.1 identified by match to protein family HMM TIGR01409 YP_001074936.1 identified by match to protein family HMM PF01752 YP_001074938.1 identified by match to protein family HMM PF06224 YP_001074940.1 identified by match to protein family HMM PF07690 YP_001074943.3 identified by match to protein family HMM PF01204 YP_001074947.1 identified by match to protein family HMM PF00510 YP_001074949.1 identified by match to protein family HMM PF00196 YP_001074952.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001074954.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001074955.1 identified by match to protein family HMM PF00486 YP_001074957.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409 YP_001074958.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001074959.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06719 YP_001074964.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001074965.1 identified by match to protein family HMM PF08028 YP_001074969.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001074970.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001074971.1 identified by match to protein family HMM PF06629 YP_001074972.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001074973.1 identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337 YP_001074974.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305 YP_001074975.1 identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303 YP_001074976.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299 YP_001074977.1 identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298 YP_001074978.1 identified by match to protein family HMM PF02962 YP_001074979.1 identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312 YP_001074980.1 identified by match to protein family HMM PF03328; match to protein family HMM TIGR02311 YP_001074981.1 identified by match to protein family HMM PF00165 YP_001074982.1 identified by match to protein family HMM PF00107 YP_001074983.1 identified by match to protein family HMM PF00267 YP_001074985.1 identified by match to protein family HMM PF00005 YP_001074986.1 identified by match to protein family HMM PF00528 YP_001074987.1 identified by match to protein family HMM PF01547 YP_001074988.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001074989.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001074990.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03476 YP_001074993.1 identified by match to protein family HMM PF00267 YP_001074996.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001074998.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001074999.1 identified by match to protein family HMM PF04248 YP_001075000.1 identified by match to protein family HMM PF03781 YP_001075006.1 identified by match to protein family HMM PF05231 YP_001075010.1 identified by match to protein family HMM PF00440 YP_001075012.1 identified by match to protein family HMM PF01965 YP_001075014.1 identified by match to protein family HMM PF00724 YP_001075018.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001075020.1 identified by match to protein family HMM PF01594 YP_001075022.1 identified by match to protein family HMM PF00106 YP_001075024.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; similar to transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain YP_001075026.1 identified by match to protein family HMM PF02518 YP_001075028.1 identified by match to protein family HMM PF00027 YP_001075029.1 activates fatty acids by binding to coenzyme A YP_001075030.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001075031.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001075032.1 identified by match to protein family HMM PF00535; match to protein family HMM PF07238 YP_001075040.1 identified by match to protein family HMM PF07883 YP_001075044.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075045.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001075046.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_001075049.1 identified by match to protein family HMM PF03583 YP_001075052.1 identified by match to protein family HMM PF00267 YP_001075053.1 identified by match to protein family HMM PF03640 YP_001075055.1 identified by match to protein family HMM PF00196 YP_001075056.1 identified by match to protein family HMM PF00324 YP_001075057.1 identified by match to protein family HMM PF03576 YP_001075058.1 identified by match to protein family HMM PF00328 YP_001075060.1 identified by match to protein family HMM PF04632 YP_001075061.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075065.1 identified by match to protein family HMM PF00267 YP_001075066.1 identified by match to protein family HMM PF00903 YP_001075068.1 identified by match to protein family HMM PF02133 YP_001075069.1 identified by match to protein family HMM PF02954; match to protein family HMM PF07905 YP_001075070.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001075071.1 identified by match to protein family HMM PF07690 YP_001075072.1 identified by match to protein family HMM PF05853 YP_001075073.1 identified by match to protein family HMM PF00106 YP_001075074.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001075076.1 identified by match to protein family HMM PF00654 YP_001075078.1 identified by match to protein family HMM PF03150 YP_001075079.1 identified by match to protein family HMM PF04185 YP_001075080.1 identified by match to protein family HMM TIGR01409 YP_001075083.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001075091.1 identified by match to protein family HMM PF01047 YP_001075094.1 identified by match to protein family HMM PF03758 YP_001075102.1 catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA YP_001075103.1 identified by match to protein family HMM PF00171 YP_001075104.1 catalyzes the conversion of ferulic acid to feruloyl-CoA YP_001075105.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075107.1 identified by match to protein family HMM PF00267 YP_001075108.1 identified by match to protein family HMM PF07519 YP_001075109.1 identified by match to protein family HMM PF01614 YP_001075110.1 identified by match to protein family HMM PF00532 YP_001075111.1 identified by match to protein family HMM PF00005 YP_001075112.1 identified by match to protein family HMM PF02653 YP_001075113.1 identified by match to protein family HMM PF04292 YP_001075115.1 identified by match to protein family HMM PF04909 YP_001075117.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001075118.1 identified by match to protein family HMM PF01557 YP_001075120.1 identified by match to protein family HMM PF00106 YP_001075125.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001075128.1 identified by match to protein family HMM PF00816 YP_001075130.1 identified by match to protein family HMM PF01614 YP_001075132.1 identified by match to protein family HMM PF00563 YP_001075135.1 identified by match to protein family HMM PF00440 YP_001075137.1 identified by match to protein family HMM PF01094 YP_001075139.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001075141.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254 YP_001075143.1 identified by match to protein family HMM PF01037 YP_001075145.1 identified by match to protein family HMM PF00324 YP_001075146.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001075150.1 identified by match to protein family HMM PF00583 YP_001075151.1 identified by match to protein family HMM PF03171 YP_001075158.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001075159.1 identified by match to protein family HMM PF00072 YP_001075160.1 identified by match to protein family HMM PF04509 YP_001075161.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073 YP_001075162.1 identified by match to protein family HMM PF01835 YP_001075169.1 identified by match to protein family HMM PF00133 YP_001075173.1 identified by match to protein family HMM PF02668 YP_001075175.1 identified by match to protein family HMM PF00266 YP_001075177.1 identified by match to protein family HMM PF01752 YP_001075179.1 associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing YP_001075182.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_001075189.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001075191.1 identified by match to protein family HMM PF00582 YP_001075192.1 identified by match to protein family HMM PF00582 YP_001075193.1 identified by match to protein family HMM PF00582 YP_001075194.1 identified by match to protein family HMM PF00582 YP_001075195.1 identified by match to protein family HMM PF00107 YP_001075198.1 identified by match to protein family HMM PF07690 YP_001075201.1 identified by match to protein family HMM PF00106 YP_001075205.1 identified by match to protein family HMM PF00324 YP_001075208.1 identified by match to protein family HMM PF00816 YP_001075210.1 identified by match to protein family HMM PF08028 YP_001075217.1 identified by match to protein family HMM PF01156 YP_001075218.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001075225.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196 YP_001075227.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075230.1 identified by match to protein family HMM PF00248 YP_001075232.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001075234.1 identified by match to protein family HMM PF00196 YP_001075236.1 identified by match to protein family HMM PF00171 YP_001075237.1 identified by match to protein family HMM PF00202 YP_001075238.1 identified by match to protein family HMM PF00324 YP_001075240.1 identified by match to protein family HMM PF00165 YP_001075241.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001075243.1 identified by match to protein family HMM PF01810 YP_001075244.1 identified by match to protein family HMM PF00583 YP_001075245.1 identified by match to protein family HMM PF00724 YP_001075249.1 identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304 YP_001075250.1 identified by match to protein family HMM PF01272 YP_001075253.1 identified by match to protein family HMM PF00571 YP_001075254.1 identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505 YP_001075256.1 identified by match to protein family HMM PF00765 YP_001075258.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001075259.1 identified by match to protein family HMM PF02308 YP_001075261.1 identified by match to protein family HMM PF00149 YP_001075262.1 identified by match to protein family HMM PF00881 YP_001075263.1 identified by match to protein family HMM PF03171 YP_001075264.1 identified by match to protein family HMM PF01614 YP_001075266.1 identified by match to protein family HMM PF00267 YP_001075267.1 identified by match to protein family HMM PF00355 YP_001075269.1 identified by match to protein family HMM PF00355 YP_001075270.1 member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria YP_001075271.1 identified by match to protein family HMM PF07883 YP_001075272.1 identified by match to protein family HMM PF00561 YP_001075273.1 identified by match to protein family HMM PF01614 YP_001075274.1 identified by match to protein family HMM PF00106 YP_001075275.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; C-terminal TPP-binding:Thiamine pyrophosphate enzyme, central region:Thiamine pyrophosphate enzyme, N-terminal TPP binding region YP_001075276.1 catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis YP_001075277.1 identified by match to protein family HMM PF00171 YP_001075278.1 identified by match to protein family HMM PF00903 YP_001075279.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001075280.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075282.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001075283.1 identified by match to protein family HMM PF00691; match to protein family HMM PF04355 YP_001075287.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001075288.1 identified by match to protein family HMM PF01037 YP_001075290.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_001075294.1 identified by match to protein family HMM PF00797 YP_001075295.1 identified by match to protein family HMM PF06475 YP_001075296.1 identified by match to protein family HMM PF02082 YP_001075297.1 identified by match to protein family HMM PF07992 YP_001075299.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075300.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687 YP_001075301.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075302.1 identified by match to protein family HMM PF00561 YP_001075304.1 identified by match to protein family HMM PF00106 YP_001075306.1 identified by match to protein family HMM PF07947 YP_001075307.1 identified by match to protein family HMM TIGR01728 YP_001075308.1 identified by match to protein family HMM PF00376 YP_001075309.1 identified by match to protein family HMM PF00583 YP_001075313.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001075315.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001075319.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992 YP_001075321.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_001075322.1 identified by match to protein family HMM PF00561 YP_001075324.1 identified by match to protein family HMM PF02627 YP_001075325.1 catalyzes the formation of L-proline from L-ornithine YP_001075326.1 identified by match to protein family HMM PF00756 YP_001075329.1 identified by match to protein family HMM PF00267 YP_001075332.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075335.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001075336.1 identified by match to protein family HMM PF00144 YP_001075338.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075342.1 identified by match to protein family HMM PF00005 YP_001075343.1 identified by match to protein family HMM PF00005 YP_001075344.1 identified by match to protein family HMM PF00528 YP_001075345.1 identified by match to protein family HMM PF00528 YP_001075346.1 identified by match to protein family HMM PF00496 YP_001075347.1 catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis YP_001075355.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_001075357.1 identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001075362.1 identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601 YP_001075365.1 identified by match to protein family HMM PF00496 YP_001075366.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_001075367.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_001075369.1 identified by match to protein family HMM PF05360 YP_001075370.1 identified by match to protein family HMM PF05249 YP_001075371.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701 YP_001075373.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001075375.1 identified by match to protein family HMM TIGR03304 YP_001075376.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001075378.1 identified by match to protein family HMM PF00082 YP_001075383.1 identified by match to protein family HMM TIGR01409 YP_001075384.1 identified by match to protein family HMM PF00732; match to protein family HMM PF01266 YP_001075385.1 identified by match to protein family HMM PF00034 YP_001075386.1 identified by match to protein family HMM PF07681 YP_001075387.1 identified by match to protein family HMM PF00267 YP_001075390.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001075391.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001075392.1 identified by match to protein family HMM PF00005 YP_001075395.1 identified by match to protein family HMM PF04828 YP_001075402.1 identified by match to protein family HMM PF05977; match to protein family HMM PF07690 YP_001075407.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001075408.1 identified by match to protein family HMM PF00072 YP_001075409.1 identified by match to protein family HMM PF00199 YP_001075411.1 identified by match to protein family HMM PF00165 YP_001075412.1 identified by match to protein family HMM PF00355 YP_001075414.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001075415.1 involved in polyketide production YP_001075416.1 Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics YP_001075417.1 involved in polyketide production YP_001075418.1 involved in polyketide synthesis YP_001075421.2 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_001075423.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001075425.1 identified by match to protein family HMM PF00999 YP_001075427.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_001075428.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_001075429.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_001075430.1 identified by match to protein family HMM PF00109; match to protein family HMM PF01212; match to protein family HMM PF02801 YP_001075431.1 identified by match to protein family HMM PF01266 YP_001075432.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001075435.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00654 YP_001075436.1 identified by match to protein family HMM PF01047 YP_001075437.1 identified by match to protein family HMM PF00571; match to protein family HMM PF04982 YP_001075438.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075439.1 identified by match to protein family HMM PF01699 YP_001075440.1 identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427 YP_001075442.1 identified by match to protein family HMM PF02517 YP_001075443.1 identified by match to protein family HMM PF01557 YP_001075445.1 identified by match to protein family HMM PF00165 YP_001075447.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001075449.1 identified by match to protein family HMM PF04264 YP_001075450.1 identified by match to protein family HMM PF03640 YP_001075453.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001075454.1 identified by match to protein family HMM PF04773 YP_001075456.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001075457.1 identified by match to protein family HMM PF02653 YP_001075458.1 identified by match to protein family HMM PF02653 YP_001075459.1 identified by match to protein family HMM PF00005 YP_001075463.1 identified by match to protein family HMM PF04140 YP_001075465.1 identified by match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001075466.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075472.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_001075473.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_001075474.1 identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914 YP_001075475.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001075476.1 identified by match to protein family HMM PF02321 YP_001075481.1 identified by match to protein family HMM PF04008 YP_001075482.1 identified by match to protein family HMM PF04073 YP_001075483.1 identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_001075487.1 identified by match to protein family HMM PF04352 YP_001075501.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001075504.1 identified by match to protein family HMM PF05175 YP_001075507.1 identified by match to protein family HMM TIGR00097 YP_001075508.1 identified by match to protein family HMM PF01209 YP_001075509.1 identified by match to protein family HMM PF00303 YP_001075511.1 identified by match to protein family HMM PF00293 YP_001075514.1 identified by match to protein family HMM PF02353 YP_001075515.1 identified by match to protein family HMM PF02668 YP_001075516.1 identified by match to protein family HMM PF00892 YP_001075518.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_001075519.1 identified by match to protein family HMM PF01694 YP_001075521.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_001075530.1 identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730 YP_001075531.1 identified by match to protein family HMM PF00873 YP_001075533.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001075535.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_001075536.1 identified by match to protein family HMM PF00400 YP_001075538.1 identified by match to protein family HMM PF03781 YP_001075539.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR00326 YP_001075540.1 identified by match to protein family HMM PF00891 YP_001075541.1 identified by match to protein family HMM PF00903 YP_001075542.1 identified by match to protein family HMM PF07690 YP_001075546.1 identified by match to protein family HMM PF00196; match to protein family HMM PF04967 YP_001075549.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001075551.1 identified by match to protein family HMM PF03551 YP_001075552.1 identified by match to protein family HMM PF02110 YP_001075555.1 identified by match to protein family HMM PF02668 YP_001075556.1 identified by match to protein family HMM PF03547 YP_001075559.1 identified by match to protein family HMM PF00582 YP_001075561.1 identified by match to protein family HMM PF01058 YP_001075562.1 identified by match to protein family HMM PF00346 YP_001075563.1 identified by match to protein family HMM PF00361 YP_001075565.1 identified by match to protein family HMM PF00146 YP_001075566.1 identified by match to protein family HMM PF00361 YP_001075568.1 identified by match to protein family HMM PF06912 YP_001075570.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001075571.1 identified by match to protein family HMM PF01564 YP_001075574.1 identified by match to protein family HMM PF07690 YP_001075575.1 identified by match to protein family HMM PF00639 YP_001075576.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_001075577.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_001075578.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660 YP_001075579.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_001075584.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229; match to protein family HMM TIGR01409 YP_001075585.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001075587.1 identified by match to protein family HMM PF00072 YP_001075588.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001075590.1 identified by match to protein family HMM PF02129; match to protein family HMM TIGR00976 YP_001075592.1 identified by match to protein family HMM PF02668 YP_001075594.1 identified by match to protein family HMM PF07690 YP_001075595.1 identified by match to protein family HMM PF00975 YP_001075596.1 identified by match to protein family HMM PF00583 YP_001075598.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801 YP_001075599.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001075600.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801 YP_001075601.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001075602.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001075603.1 identified by match to protein family HMM PF01432 YP_001075604.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472 YP_001075606.1 identified by match to protein family HMM PF00999 YP_001075611.1 identified by match to protein family HMM PF00765 YP_001075612.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_001075613.1 identified by match to protein family HMM PF00550 YP_001075615.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_001075621.1 identified by match to protein family HMM PF00550 YP_001075622.1 identified by match to protein family HMM PF00501 YP_001075623.1 identified by match to protein family HMM PF00296 YP_001075626.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001075627.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_001075628.1 identified by match to protein family HMM PF02668 YP_001075629.1 identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801 YP_001075634.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001075635.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001075636.1 identified by match to protein family HMM PF07883 YP_001075637.1 identified by match to protein family HMM PF08085 YP_001075639.1 catalyzes the conversion of carbamoyl phosphate and aspartate to form N-carbamoyl aspartate YP_001075641.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783 YP_001075643.1 identified by match to protein family HMM PF03171 YP_001075645.1 identified by match to protein family HMM PF01527 YP_001075646.1 identified by match to protein family HMM PF05488 YP_001075649.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001075650.1 identified by match to protein family HMM PF00816 YP_001075657.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001075659.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001075661.1 identified by match to protein family HMM PF00532 YP_001075662.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001075665.1 identified by match to protein family HMM TIGR02276 YP_001075666.1 identified by match to protein family HMM PF01266 YP_001075667.1 identified by match to protein family HMM PF00348 YP_001075668.2 identified by match to protein family HMM PF03936 YP_001075669.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02254 YP_001075676.1 identified by match to protein family HMM PF06983 YP_001075677.1 identified by match to protein family HMM PF01544 YP_001075680.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001075681.1 identified by match to protein family HMM PF07690 YP_001075684.1 identified by match to protein family HMM PF01547 YP_001075685.1 identified by match to protein family HMM PF00528 YP_001075686.1 identified by match to protein family HMM PF00528 YP_001075687.1 identified by match to protein family HMM PF00107 YP_001075688.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459 YP_001075689.1 identified by match to protein family HMM PF00165 YP_001075690.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_001075694.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768 YP_001075695.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001075697.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001075698.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_001075699.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_001075700.1 identified by match to protein family HMM PF07690 YP_001075703.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469 YP_001075704.1 identified by match to protein family HMM PF00072; match to protein family HMM PF03861 YP_001075707.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001075713.1 identified by match to protein family HMM PF00850 YP_001075714.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001075715.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075717.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075720.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001075721.1 identified by match to protein family HMM PF00106 YP_001075722.1 identified by match to protein family HMM PF02515 YP_001075726.1 identified by match to protein family HMM PF00107 YP_001075727.1 identified by match to protein family HMM PF00465 YP_001075735.1 identified by match to protein family HMM PF05650 YP_001075736.1 identified by match to protein family HMM PF00691 YP_001075739.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001075741.1 identified by match to protein family HMM PF03621 YP_001075742.1 identified by match to protein family HMM PF07690 YP_001075743.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733 YP_001075745.1 identified by match to protein family HMM PF00550 YP_001075746.1 identified by match to protein family HMM PF00441 YP_001075747.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770 YP_001075748.1 identified by match to protein family HMM PF00501 YP_001075751.1 identified by match to protein family HMM PF04545 YP_001075754.1 identified by match to protein family HMM PF01205 YP_001075755.1 identified by match to protein family HMM PF00892 YP_001075758.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_001075759.1 identified by match to protein family HMM PF00440 YP_001075760.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_001075763.1 identified by match to protein family HMM PF03976 YP_001075765.1 identified by match to protein family HMM PF03922 YP_001075768.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412 YP_001075772.1 identified by match to protein family HMM PF02321 YP_001075773.1 identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066 YP_001075775.1 identified by match to protein family HMM PF04307 YP_001075778.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001075782.1 identified by match to protein family HMM PF00324 YP_001075784.1 identified by match to protein family HMM PF04946 YP_001075786.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive YP_001075788.1 identified by match to protein family HMM PF01596 YP_001075789.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001075793.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424 YP_001075794.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422 YP_001075795.1 identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423 YP_001075797.1 identified by match to protein family HMM PF04951 YP_001075798.1 identified by match to protein family HMM PF03576 YP_001075799.1 identified by match to protein family HMM PF00528 YP_001075800.1 identified by match to protein family HMM PF00528 YP_001075802.1 identified by match to protein family HMM PF00496 YP_001075804.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001075805.1 identified by match to protein family HMM PF01112 YP_001075806.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001075808.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_001075809.1 identified by match to protein family HMM PF00144 YP_001075812.1 identified by match to protein family HMM PF04185 YP_001075817.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_001075818.1 identified by match to protein family HMM PF00892 YP_001075819.1 identified by match to protein family HMM PF07973 YP_001075821.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001075823.1 identified by match to protein family HMM PF07045 YP_001075827.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001075829.1 catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate YP_001075830.1 identified by match to protein family HMM PF01037 YP_001075832.1 identified by match to protein family HMM PF01936 YP_001075833.1 identified by match to protein family HMM PF07690 YP_001075834.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001075835.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075836.1 identified by match to protein family HMM PF04909 YP_001075838.1 identified by match to protein family HMM PF00149 YP_001075839.1 identified by match to protein family HMM PF03150 YP_001075840.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_001075845.1 identified by match to protein family HMM PF00583 YP_001075846.1 identified by match to protein family HMM PF04143 YP_001075847.1 identified by match to protein family HMM PF04143 YP_001075848.1 identified by match to protein family HMM PF01022 YP_001075850.1 identified by match to protein family HMM PF01292 YP_001075852.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_001075854.1 identified by match to protein family HMM PF01381 YP_001075855.1 identified by match to protein family HMM PF00132 YP_001075856.1 identified by match to protein family HMM PF00581 YP_001075858.1 identified by match to protein family HMM PF00326; match to protein family HMM PF02897 YP_001075859.1 identified by match to protein family HMM PF00529 YP_001075861.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001075863.1 identified by match to protein family HMM TIGR01556 YP_001075865.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001075869.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes YP_001075870.1 catalyzes the formation of betaine from betaine aldehyde YP_001075871.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_001075873.1 identified by match to protein family HMM PF05853 YP_001075875.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001075876.1 identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229 YP_001075877.1 identified by match to protein family HMM PF00072 YP_001075878.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229 YP_001075880.1 identified by match to protein family HMM PF02566 YP_001075881.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001075887.1 identified by match to protein family HMM PF00313 YP_001075890.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001075892.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526 YP_001075893.1 identified by match to protein family HMM PF04268 YP_001075894.1 identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372 YP_001075895.1 identified by match to protein family HMM PF04267 YP_001075896.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR01373 YP_001075897.1 identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720 YP_001075898.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001075900.1 identified by match to protein family HMM PF04337 YP_001075904.1 identified by match to protein family HMM PF07300 YP_001075907.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_001075908.1 identified by match to protein family HMM PF01654 YP_001075910.1 identified by match to protein family HMM PF03713 YP_001075911.1 identified by match to protein family HMM PF02308 YP_001075913.1 identified by match to protein family HMM PF00614 YP_001075914.1 identified by match to protein family HMM PF03372 YP_001075927.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001075928.1 identified by match to protein family HMM PF00165 YP_001075929.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001075932.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_001075933.1 identified by match to protein family HMM TIGR02499 YP_001075934.1 identified by match to protein family HMM TIGR02560 YP_001075935.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001075936.1 identified by match to protein family HMM TIGR02558 YP_001075937.1 identified by match to protein family HMM TIGR02561 YP_001075938.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_001075939.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001075940.1 identified by match to protein family HMM TIGR02557 YP_001075941.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001075942.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_001075943.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001075949.1 identified by match to protein family HMM PF05932 YP_001075951.1 identified by match to protein family HMM PF07883 YP_001075952.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001075953.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001075954.1 identified by match to protein family HMM PF03446 YP_001075955.1 identified by match to protein family HMM PF07005 YP_001075956.1 identified by match to protein family HMM PF00596 YP_001075957.1 identified by match to protein family HMM PF07690 YP_001075958.1 identified by match to protein family HMM PF01261 YP_001075959.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001075961.1 identified by match to protein family HMM PF05118 YP_001075962.1 identified by match to protein family HMM PF05118 YP_001075964.1 identified by match to protein family HMM PF04069 YP_001075965.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001075966.1 identified by match to protein family HMM PF00528 YP_001075967.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001075968.1 identified by match to protein family HMM PF03358 YP_001075975.1 identified by match to protein family HMM PF00903 YP_001075976.1 identified by match to protein family HMM PF01451 YP_001075977.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_001075980.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662 YP_001075983.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001075985.1 identified by match to protein family HMM PF03895; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001075990.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_001075991.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001075992.1 identified by match to protein family HMM PF01039 YP_001075993.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001075995.1 identified by match to protein family HMM PF00440 YP_001076000.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_001076002.1 identified by match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784 YP_001076004.1 identified by match to protein family HMM PF02373 YP_001076007.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001076008.1 identified by match to protein family HMM PF00583 YP_001076010.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001076011.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001076015.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929 YP_001076016.1 identified by match to protein family HMM PF02424 YP_001076017.1 identified by match to protein family HMM PF00171 YP_001076018.1 identified by match to protein family HMM PF00155 YP_001076021.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076022.1 identified by match to protein family HMM TIGR01552 YP_001076024.1 identified by match to protein family HMM PF01266 YP_001076025.1 identified by match to protein family HMM PF00440 YP_001076027.1 identified by match to protein family HMM PF00614 YP_001076029.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001076031.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409 YP_001076033.1 identified by match to protein family HMM PF01232; match to protein family HMM PF08125 YP_001076034.1 identified by match to protein family HMM PF00392 YP_001076035.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_001076036.1 identified by match to protein family HMM PF00107 YP_001076038.1 identified by match to protein family HMM PF00892 YP_001076039.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001076040.1 identified by match to protein family HMM PF00440 YP_001076041.1 identified by match to protein family HMM PF06792 YP_001076045.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376 YP_001076046.1 identified by match to protein family HMM PF03781 YP_001076047.1 identified by match to protein family HMM PF02630 YP_001076050.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001076053.1 identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304 YP_001076055.1 identified by match to protein family HMM PF06812 YP_001076056.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001076057.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001076058.1 identified by match to protein family HMM PF05591 YP_001076059.1 identified by match to protein family HMM PF05943 YP_001076061.1 identified by match to protein family HMM PF07025 YP_001076062.1 identified by match to protein family HMM PF05947 YP_001076063.1 identified by match to protein family HMM PF06996 YP_001076064.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001076065.1 identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646 YP_001076066.1 identified by match to protein family HMM PF00805 YP_001076067.1 identified by match to protein family HMM PF00805 YP_001076071.1 identified by match to protein family HMM PF05936 YP_001076091.1 identified by match to protein family HMM PF00165 YP_001076095.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001076096.1 identified by match to protein family HMM PF05932 YP_001076100.1 identified by match to protein family HMM PF07487 YP_001076101.1 identified by match to protein family HMM PF01464 YP_001076104.1 identified by match to protein family HMM TIGR02553 YP_001076105.1 identified by match to protein family HMM PF00816 YP_001076106.1 identified by match to protein family HMM TIGR02101 YP_001076107.1 identified by match to protein family HMM PF03518 YP_001076108.1 identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552 YP_001076109.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins YP_001076110.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001076111.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001076112.1 part of a type III secretory system probably involved in invasion into eukaryotic cells YP_001076113.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001076116.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase YP_001076118.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001076119.1 identified by match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568 YP_001076120.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001076121.1 identified by match to protein family HMM PF00165 YP_001076124.1 identified by match to protein family HMM TIGR02554 YP_001076125.1 identified by match to protein family HMM TIGR02105 YP_001076127.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001076128.1 identified by match to protein family HMM TIGR02555 YP_001076129.1 identified by match to protein family HMM TIGR02499 YP_001076132.1 identified by match to protein family HMM PF00486 YP_001076137.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_001076139.1 identified by match to protein family HMM PF01047 YP_001076140.1 identified by match to protein family HMM PF00903 YP_001076142.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001076144.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076145.1 identified by match to protein family HMM PF01070 YP_001076146.1 identified by match to protein family HMM PF00450 YP_001076149.1 identified by match to protein family HMM PF00082 YP_001076150.1 identified by match to protein family HMM PF01810 YP_001076151.1 identified by match to protein family HMM PF01037 YP_001076154.1 identified by match to protein family HMM PF01384 YP_001076157.1 identified by match to protein family HMM PF00501 YP_001076161.1 identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967 YP_001076162.1 identified by match to protein family HMM PF00765 YP_001076164.1 identified by match to protein family HMM PF00724 YP_001076166.1 identified by match to protein family HMM PF00528 YP_001076167.1 identified by match to protein family HMM PF00005 YP_001076168.1 identified by match to protein family HMM PF04069; match to protein family HMM TIGR01729 YP_001076170.1 catalyzes the conversion of taurine (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde concurrently with the conversion of alpha-ketoglutarate to succinate and carbon dioxide; non-heme iron oxidase; allows the use of taurine as an alternative sulfur source; forms homodimers YP_001076173.1 identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030 YP_001076177.1 identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721 YP_001076178.1 catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans YP_001076179.1 binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP) YP_001076184.1 identified by match to protein family HMM PF01381 YP_001076185.1 identified by match to protein family HMM PF07804; match to protein family HMM PF07805 YP_001076188.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076189.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_001076198.1 identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516 YP_001076199.1 identified by match to protein family HMM TIGR02532 YP_001076202.1 identified by match to protein family HMM PF00482 YP_001076203.1 identified by match to protein family HMM PF00437 YP_001076204.1 identified by match to protein family HMM TIGR03021 YP_001076206.1 identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520 YP_001076209.1 identified by match to protein family HMM PF00437 YP_001076211.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001076212.1 identified by match to protein family HMM PF02518 YP_001076221.1 identified by match to protein family HMM PF00165 YP_001076227.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403 YP_001076228.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_001076229.1 identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551 YP_001076230.1 identified by match to protein family HMM TIGR02557 YP_001076231.1 identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399 YP_001076232.1 identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404 YP_001076233.1 identified by match to protein family HMM TIGR02561 YP_001076234.1 identified by match to protein family HMM TIGR02558 YP_001076235.1 identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544 YP_001076236.1 identified by match to protein family HMM TIGR02560 YP_001076237.1 identified by match to protein family HMM TIGR02499 YP_001076238.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546 YP_001076239.1 identified by match to protein family HMM TIGR02559 YP_001076240.1 identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401 YP_001076244.1 identified by match to protein family HMM PF02668 YP_001076245.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_001076246.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001076247.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733 YP_001076248.1 identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709 YP_001076252.1 catalyzes the formation of acetate from pyruvate YP_001076253.1 identified by match to protein family HMM PF02550 YP_001076254.1 identified by match to protein family HMM PF01575 YP_001076255.1 identified by match to protein family HMM PF03328 YP_001076256.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076259.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076260.1 identified by match to protein family HMM PF07690 YP_001076262.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001076264.1 identified by match to protein family HMM PF00072 YP_001076266.1 identified by match to protein family HMM PF00652 YP_001076269.1 identified by match to protein family HMM PF01734 YP_001076275.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001076277.1 identified by match to protein family HMM PF07690 YP_001076280.1 identified by match to protein family HMM PF00933; match to protein family HMM PF01915 YP_001076287.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475 YP_001076288.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001076289.1 identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562 YP_001076290.1 identified by match to protein family HMM TIGR01583 YP_001076291.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582 YP_001076292.2 identified by match to protein family HMM PF01568; match to protein family HMM TIGR01553 YP_001076296.1 identified by match to protein family HMM PF02698 YP_001076297.1 identified by match to protein family HMM TIGR01409 YP_001076298.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001076301.1 identified by match to protein family HMM PF00296 YP_001076302.1 identified by match to protein family HMM PF00497 YP_001076303.1 identified by match to protein family HMM PF00583 YP_001076306.1 identified by match to protein family HMM PF04952 YP_001076309.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001076310.1 identified by match to protein family HMM PF00267 YP_001076314.1 identified by match to protein family HMM PF00216 YP_001076315.1 identified by match to protein family HMM PF01757 YP_001076316.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001076320.1 identified by match to protein family HMM PF01757 YP_001076321.1 identified by match to protein family HMM PF00534 YP_001076322.1 identified by match to protein family HMM PF01943 YP_001076327.1 identified by match to protein family HMM PF01757 YP_001076328.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472 YP_001076329.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001076330.1 identified by match to protein family HMM PF07883 YP_001076332.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_001076333.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001076334.1 identified by match to protein family HMM PF02674 YP_001076335.1 identified by match to protein family HMM PF05036 YP_001076336.1 identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499 YP_001076337.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001076338.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001076339.1 identified by match to protein family HMM PF01555 YP_001076340.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001076341.2 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001076342.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001076344.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001076346.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001076347.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001076348.1 identified by match to protein family HMM PF08085 YP_001076349.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001076356.1 identified by match to protein family HMM PF01037 YP_001076357.1 paralogs to the E1 component of pyruvate dehydrogenase subunit E1 YP_001076358.1 identified by match to protein family HMM PF07350 YP_001076360.1 identified by match to protein family HMM PF00903 YP_001076361.1 identified by match to protein family HMM PF00165 YP_001076362.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_001076363.1 identified by match to protein family HMM PF03937 YP_001076364.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001076365.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001076366.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968 YP_001076367.1 identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970 YP_001076368.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001076369.1 catalyzes the oxidation of malate to oxaloacetate YP_001076370.1 identified by match to protein family HMM PF03328 YP_001076372.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_001076373.1 catalyzes the conversion of citrate to isocitrate YP_001076374.1 identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901 YP_001076376.2 identified by match to protein family HMM PF03865 YP_001076381.1 identified by match to protein family HMM PF00034 YP_001076385.1 identified by match to protein family HMM PF00264 YP_001076391.1 identified by match to protein family HMM PF00082 YP_001076392.1 identified by match to protein family HMM PF00528 YP_001076393.1 identified by match to protein family HMM PF00528 YP_001076395.1 identified by match to protein family HMM PF01547 YP_001076396.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187 YP_001076397.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001076398.1 acts as a molecular chaperone to fold and export lipase A YP_001076399.1 identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819 YP_001076401.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778 YP_001076404.1 identified by match to protein family HMM PF01292 YP_001076406.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_001076407.1 identified by match to protein family HMM PF07883 YP_001076409.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_001076411.1 identified by match to protein family HMM PF06080 YP_001076412.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001076413.1 identified by match to protein family HMM PF02133 YP_001076416.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001076417.1 synthesizes RNA primers at the replication forks YP_001076418.1 identified by match to protein family HMM PF02637 YP_001076419.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001076420.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001076421.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001076423.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_001076424.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001076425.1 identified by match to protein family HMM PF00348 YP_001076426.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001076427.1 identified by match to protein family HMM PF00355 YP_001076428.1 identified by match to protein family HMM PF01609 YP_001076429.1 identified by match to protein family HMM PF00581 YP_001076430.1 identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409 YP_001076434.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001076435.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001076436.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001076440.1 identified by match to protein family HMM PF04463 YP_001076446.1 identified by match to protein family HMM PF00589 YP_001076447.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_001076450.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_001076453.1 identified by match to protein family HMM PF01047 YP_001076454.1 identified by match to protein family HMM PF02566 YP_001076456.1 identified by match to protein family HMM TIGR01840 YP_001076457.1 identified by match to protein family HMM PF01569 YP_001076458.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001076459.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_001076460.1 identified by match to protein family HMM PF00005 YP_001076464.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638 YP_001076465.1 identified by match to protein family HMM PF05235 YP_001076466.1 identified by match to protein family HMM PF01361 YP_001076467.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076468.1 identified by match to protein family HMM PF00892 YP_001076469.1 identified by match to protein family HMM PF00512 YP_001076470.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001076471.1 identified by match to protein family HMM PF02581 YP_001076472.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922 YP_001076474.1 identified by match to protein family HMM PF04073 YP_001076475.1 identified by match to protein family HMM PF01070 YP_001076479.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001076483.1 identified by match to protein family HMM PF01810 YP_001076484.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883 YP_001076485.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_001076486.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_001076487.1 identified by match to protein family HMM PF00975 YP_001076488.1 identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122 YP_001076490.1 identified by match to protein family HMM PF00975 YP_001076491.1 identified by match to protein family HMM PF05721; match to protein family HMM TIGR01762 YP_001076492.1 identified by match to protein family HMM PF00550 YP_001076493.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR01733 YP_001076495.1 identified by match to protein family HMM PF01022 YP_001076498.1 identified by match to protein family HMM PF07077 YP_001076499.1 identified by match to protein family HMM PF00149 YP_001076505.1 identified by match to protein family HMM PF00254 YP_001076506.1 identified by match to protein family HMM PF00165 YP_001076507.1 identified by match to protein family HMM PF00534 YP_001076508.1 identified by match to protein family HMM PF00534 YP_001076511.1 identified by match to protein family HMM PF00535 YP_001076512.1 identified by match to protein family HMM PF02706 YP_001076513.1 identified by match to protein family HMM PF02563 YP_001076514.1 identified by match to protein family HMM PF01451 YP_001076515.1 identified by match to protein family HMM PF00984; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001076516.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001076518.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479 YP_001076522.1 identified by match to protein family HMM PF02915 YP_001076523.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510 YP_001076525.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937 YP_001076527.1 identified by match to protein family HMM PF04946 YP_001076528.1 identified by match to protein family HMM PF04946 YP_001076529.1 identified by match to protein family HMM PF03372 YP_001076531.1 identified by match to protein family HMM PF05957 YP_001076534.1 identified by match to protein family HMM PF01594 YP_001076536.1 identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR03304 YP_001076538.1 identified by match to protein family HMM PF07690 YP_001076539.1 identified by match to protein family HMM PF00107 YP_001076541.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_001076543.1 identified by match to protein family HMM PF00106 YP_001076544.1 identified by match to protein family HMM PF00300 YP_001076545.1 identified by match to protein family HMM PF01636 YP_001076546.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_001076547.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076548.1 identified by match to protein family HMM PF02566 YP_001076552.1 identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413 YP_001076554.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001076555.1 identified by match to protein family HMM PF01965 YP_001076556.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01965 YP_001076558.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001076560.1 identified by match to protein family HMM PF05433 YP_001076563.1 identified by match to protein family HMM PF02517 YP_001076564.1 identified by match to protein family HMM PF00654 YP_001076566.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493 YP_001076567.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001076568.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518 YP_001076569.1 identified by match to protein family HMM PF01584 YP_001076570.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719 YP_001076571.1 identified by match to protein family HMM PF01584 YP_001076572.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001076574.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001076577.1 identified by match to protein family HMM PF01575 YP_001076579.1 identified by match to protein family HMM PF00171 YP_001076580.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_001076582.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831 YP_001076584.1 identified by match to protein family HMM PF04286 YP_001076588.1 identified by match to protein family HMM PF00614 YP_001076589.1 identified by match to protein family HMM PF01230 YP_001076590.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001076591.1 identified by match to protein family HMM PF00355 YP_001076592.1 identified by match to protein family HMM PF00866 YP_001076593.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_001076594.1 identified by match to protein family HMM PF00165 YP_001076595.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076596.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534 YP_001076597.1 identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439 YP_001076598.1 identified by match to protein family HMM PF02426 YP_001076599.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847 YP_001076600.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842 YP_001076601.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843 YP_001076602.1 identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 YP_001076605.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001076607.1 identified by match to protein family HMM PF00165 YP_001076608.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076609.1 identified by match to protein family HMM PF01370 YP_001076610.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076611.1 identified by match to protein family HMM PF00355; match to protein family HMM PF00848 YP_001076612.1 identified by match to protein family HMM PF00866 YP_001076613.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021 YP_001076614.1 catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol YP_001076615.1 identified by match to protein family HMM PF07859 YP_001076618.1 identified by match to protein family HMM PF01047 YP_001076619.1 identified by match to protein family HMM PF00857 YP_001076623.1 identified by match to protein family HMM PF02012 YP_001076624.1 identified by match to protein family HMM PF00324 YP_001076629.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_001076631.1 identified by match to protein family HMM PF00106; match to protein family HMM TIGR01829 YP_001076634.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001076636.1 identified by match to protein family HMM TIGR02822 YP_001076644.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_001076646.1 identified by match to protein family HMM PF04972 YP_001076649.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_001076650.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001076652.1 identified by match to protein family HMM PF01522 YP_001076653.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001076654.1 identified by match to protein family HMM PF00529 YP_001076655.1 identified by match to protein family HMM PF00005 YP_001076656.1 identified by match to protein family HMM PF02687 YP_001076658.1 identified by match to protein family HMM PF00582 YP_001076660.1 identified by match to protein family HMM PF00440 YP_001076661.1 identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845 YP_001076662.1 identified by match to protein family HMM PF00529 YP_001076663.1 identified by match to protein family HMM PF00005; match to protein family HMM PF01061 YP_001076664.1 identified by match to protein family HMM PF01061 YP_001076665.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001076668.1 identified by match to protein family HMM PF00015 YP_001076672.1 identified by match to protein family HMM PF00107 YP_001076674.1 identified by match to protein family HMM PF00231 YP_001076675.1 produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit YP_001076676.1 identified by match to protein family HMM PF00430 YP_001076677.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001076678.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001076680.1 identified by match to protein family HMM TIGR02230 YP_001076681.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex YP_001076682.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit YP_001076684.1 identified by match to protein family HMM PF00561; match to protein family HMM PF07167 YP_001076685.1 identified by match to protein family HMM PF01515; match to protein family HMM PF01575 YP_001076686.1 Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation YP_001076689.1 identified by match to protein family HMM PF00294 YP_001076690.1 identified by match to protein family HMM PF04972 YP_001076692.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_001076696.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001076697.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_001076698.1 identified by match to protein family HMM PF01243 YP_001076700.1 identified by match to protein family HMM PF00043; match to protein family HMM PF00462; match to protein family HMM PF02798 YP_001076701.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076702.1 identified by match to protein family HMM PF00440 YP_001076703.1 identified by match to protein family HMM PF00106 YP_001076704.1 identified by match to protein family HMM PF01266 YP_001076705.1 identified by match to protein family HMM PF00561 YP_001076708.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001076712.1 identified by match to protein family HMM PF00082 YP_001076719.1 identified by match to protein family HMM PF02706 YP_001076723.1 identified by match to protein family HMM PF02583 YP_001076724.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001076726.1 identified by match to protein family HMM PF03265 YP_001076730.1 identified by match to protein family HMM PF00149 YP_001076734.1 identified by match to protein family HMM PF00596 YP_001076735.1 identified by match to protein family HMM PF03167 YP_001076737.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_001076739.1 identified by match to protein family HMM PF00082 YP_001076746.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387 YP_001076747.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386 YP_001076749.2 identified by match to protein family HMM PF00905 YP_001076750.1 identified by match to protein family HMM TIGR02276 YP_001076752.1 identified by match to protein family HMM PF03239 YP_001076759.1 identified by match to protein family HMM PF04214 YP_001076760.1 identified by match to protein family HMM PF01527 YP_001076763.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_001076765.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04820 YP_001076766.1 identified by match to protein family HMM PF00355 YP_001076770.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001076775.1 identified by match to protein family HMM PF00535 YP_001076778.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001076780.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076781.1 identified by match to protein family HMM PF03741 YP_001076784.1 identified by match to protein family HMM PF04828 YP_001076785.1 identified by match to protein family HMM PF00282 YP_001076789.1 identified by match to protein family HMM PF00107 YP_001076791.1 identified by match to protein family HMM PF00282 YP_001076793.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_001076797.1 identified by match to protein family HMM PF00440 YP_001076799.1 identified by match to protein family HMM PF01609 YP_001076800.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001076802.1 identified by match to protein family HMM PF00106 YP_001076803.1 identified by match to protein family HMM PF01039 YP_001076804.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001076805.1 identified by match to protein family HMM PF00378 YP_001076806.1 identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786 YP_001076807.1 identified by match to protein family HMM PF05853 YP_001076809.1 identified by match to protein family HMM PF00501 YP_001076813.1 identified by match to protein family HMM PF00487 YP_001076814.1 identified by match to protein family HMM PF00550 YP_001076815.1 identified by match to protein family HMM PF02353 YP_001076816.1 identified by match to protein family HMM PF00487 YP_001076817.1 identified by match to protein family HMM PF04909 YP_001076818.1 identified by match to protein family HMM PF00501 YP_001076819.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_001076822.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052 YP_001076826.1 identified by match to protein family HMM PF00665 YP_001076827.1 identified by match to protein family HMM PF01527 YP_001076828.1 identified by match to protein family HMM PF05344 YP_001076829.1 identified by match to protein family HMM PF03865 YP_001076831.1 identified by match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01731; match to protein family HMM TIGR01901 YP_001076835.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001076837.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_001076841.1 identified by match to protein family HMM PF05717 YP_001076844.1 identified by match to protein family HMM PF02065 YP_001076845.1 identified by match to protein family HMM PF00528 YP_001076846.1 identified by match to protein family HMM PF00528 YP_001076847.1 identified by match to protein family HMM PF01547 YP_001076851.1 identified by match to protein family HMM PF00532 YP_001076855.1 identified by match to protein family HMM PF05344; match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001076857.1 identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646 YP_001076858.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724 YP_001076859.1 identified by match to protein family HMM PF06996 YP_001076860.1 identified by match to protein family HMM PF05947 YP_001076861.1 identified by match to protein family HMM PF07025 YP_001076862.1 identified by match to protein family HMM PF05638 YP_001076863.1 identified by match to protein family HMM PF05943 YP_001076864.1 identified by match to protein family HMM PF05591 YP_001076865.1 identified by match to protein family HMM PF06812 YP_001076866.1 identified by match to protein family HMM PF00069 YP_001076869.1 identified by match to protein family HMM PF06744; match to protein family HMM PF06761 YP_001076870.1 identified by match to protein family HMM PF00691 YP_001076871.1 identified by match to protein family HMM PF05936 YP_001076875.1 identified by match to protein family HMM PF00498 YP_001076878.1 identified by match to protein family HMM PF01494 YP_001076882.1 identified by match to protein family HMM PF00106 YP_001076884.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076885.1 catalyzes the formation of pyruvate from serine YP_001076887.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076891.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01022 YP_001076892.1 identified by match to protein family HMM PF00753 YP_001076893.1 identified by match to protein family HMM PF07690 YP_001076894.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001076897.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_001076900.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076901.1 identified by match to protein family HMM PF01070 YP_001076902.1 identified by match to protein family HMM PF01557 YP_001076906.1 identified by match to protein family HMM PF01614 YP_001076907.2 catalyzes the formation of indole-3-acetic acid from indole-3-acetamide YP_001076911.1 identified by match to protein family HMM PF00583; match to protein family HMM PF02629 YP_001076915.1 identified by match to protein family HMM PF00816 YP_001076919.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001076921.1 identified by match to protein family HMM PF03600 YP_001076927.1 identified by match to protein family HMM PF03573 YP_001076928.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001076929.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727 YP_001076930.1 identified by match to protein family HMM PF00528 YP_001076931.1 identified by match to protein family HMM PF00528 YP_001076932.1 identified by match to protein family HMM PF00496 YP_001076933.1 identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883 YP_001076936.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_001076938.1 identified by match to protein family HMM PF05036 YP_001076940.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076942.1 identified by match to protein family HMM PF02515 YP_001076943.1 identified by match to protein family HMM PF01614 YP_001076945.1 identified by match to protein family HMM PF03328 YP_001076946.1 identified by match to protein family HMM PF00267 YP_001076947.1 identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409 YP_001076950.1 identified by match to protein family HMM TIGR00688 YP_001076951.1 identified by match to protein family HMM PF00708 YP_001076952.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993 YP_001076955.1 identified by match to protein family HMM PF00535 YP_001076958.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001076959.1 identified by match to protein family HMM PF04055 YP_001076963.1 identified by match to protein family HMM PF00202 YP_001076967.1 identified by match to protein family HMM PF04328 YP_001076968.1 identified by match to protein family HMM PF02554 YP_001076970.1 identified by match to protein family HMM PF00561 YP_001076971.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_001076972.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001076973.1 identified by match to protein family HMM PF00903 YP_001076976.1 identified by match to protein family HMM PF04138 YP_001076978.1 identified by match to protein family HMM PF00535 YP_001076983.1 identified by match to protein family HMM PF04964 YP_001076984.1 identified by match to protein family HMM PF04964 YP_001076986.1 identified by match to protein family HMM PF01478 YP_001076988.1 identified by match to protein family HMM PF06981 YP_001076989.1 identified by match to protein family HMM PF00263; match to protein family HMM PF04972 YP_001076992.1 identified by match to protein family HMM PF07811 YP_001076993.1 identified by match to protein family HMM PF07811 YP_001076994.1 identified by match to protein family HMM PF00072 YP_001076995.1 identified by match to protein family HMM PF00437 YP_001076996.1 identified by match to protein family HMM PF00482 YP_001076997.1 identified by match to protein family HMM PF00482 YP_001076998.1 identified by match to protein family HMM PF01037 YP_001077000.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_001077002.1 identified by match to protein family HMM PF01042 YP_001077003.1 identified by match to protein family HMM PF00267 YP_001077004.1 identified by match to protein family HMM PF00324 YP_001077005.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001077006.1 identified by match to protein family HMM PF07171; match to protein family HMM PF07364 YP_001077007.1 identified by match to protein family HMM PF07690 YP_001077008.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001077015.1 identified by match to protein family HMM PF00999 YP_001077017.1 identified by match to protein family HMM PF01068; match to protein family HMM TIGR02776; match to protein family HMM TIGR02777; match to protein family HMM TIGR02778; match to protein family HMM TIGR02779 YP_001077018.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772 YP_001077020.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide YP_001077022.1 identified by match to protein family HMM PF07043 YP_001077024.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001077026.1 identified by match to protein family HMM PF05067 YP_001077027.1 identified by match to protein family HMM PF05974 YP_001077029.1 identified by match to protein family HMM PF06629 YP_001077040.1 identified by match to protein family HMM PF00571 YP_001077041.1 identified by match to protein family HMM PF05239 YP_001077042.1 identified by match to protein family HMM PF00072 YP_001077044.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758 YP_001077046.1 identified by match to protein family HMM PF00107 YP_001077049.1 identified by match to protein family HMM PF00106 YP_001077055.1 identified by match to protein family HMM PF00106 YP_001077056.1 identified by match to protein family HMM PF04972 YP_001077057.1 identified by match to protein family HMM PF00534 YP_001077058.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001077059.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_001077062.1 identified by match to protein family HMM PF00535 YP_001077063.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001077065.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001077066.1 identified by match to protein family HMM PF00534 YP_001077067.1 identified by match to protein family HMM PF01075 YP_001077068.1 identified by match to protein family HMM PF00535 YP_001077069.1 identified by match to protein family HMM PF02543 YP_001077070.1 identified by match to protein family HMM PF01075 YP_001077071.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_001077072.1 identified by match to protein family HMM PF00106 YP_001077073.1 identified by match to protein family HMM PF01610 YP_001077075.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664 YP_001077076.1 identified by match to protein family HMM PF04972 YP_001077077.1 identified by match to protein family HMM PF02666 YP_001077078.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001077081.1 identified by match to protein family HMM PF03446 YP_001077084.1 identified by match to protein family HMM PF01648 YP_001077086.1 identified by match to protein family HMM PF07690 YP_001077088.1 identified by match to protein family HMM PF01613 YP_001077093.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001077094.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_001077095.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001077096.1 identified by match to protein family HMM PF00676 YP_001077102.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001077104.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00732 YP_001077105.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992 YP_001077106.1 identified by match to protein family HMM PF01258 YP_001077111.1 identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849 YP_001077113.1 class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides YP_001077117.1 identified by match to protein family HMM PF00916; match to protein family HMM PF01740 YP_001077120.1 identified by match to protein family HMM PF00571 YP_001077122.1 identified by match to protein family HMM PF00011 YP_001077124.1 identified by match to protein family HMM TIGR03304 YP_001077125.1 identified by match to protein family HMM PF00501 YP_001077126.1 identified by match to protein family HMM PF00196 YP_001077128.1 identified by match to protein family HMM PF00107 YP_001077129.1 identified by match to protein family HMM PF02668 YP_001077130.1 identified by match to protein family HMM PF05853 YP_001077131.1 identified by match to protein family HMM PF07690 YP_001077132.1 identified by match to protein family HMM PF06821 YP_001077133.1 identified by match to protein family HMM PF01323 YP_001077135.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879 YP_001077136.1 identified by match to protein family HMM PF00037 YP_001077140.1 identified by match to protein family HMM PF01522 YP_001077143.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912 YP_001077145.1 identified by match to protein family HMM PF00085 YP_001077148.1 identified by match to protein family HMM PF00267 YP_001077150.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_001077154.1 identified by match to protein family HMM PF00583 YP_001077155.1 identified by match to protein family HMM PF00583 YP_001077157.1 identified by match to protein family HMM PF01523 YP_001077161.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_001077162.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_001077163.1 identified by match to protein family HMM PF05494 YP_001077166.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001077167.1 identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819 YP_001077168.1 identified by match to protein family HMM PF01648 YP_001077172.1 identified by match to protein family HMM PF02687 YP_001077173.1 identified by match to protein family HMM PF00005 YP_001077174.1 identified by match to protein family HMM PF00743 YP_001077175.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00106 YP_001077176.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801 YP_001077177.1 identified by match to protein family HMM PF00698 YP_001077181.1 identified by match to protein family HMM PF04333 YP_001077182.1 identified by match to protein family HMM PF02627 YP_001077183.1 identified by match to protein family HMM PF00202 YP_001077184.1 identified by match to protein family HMM PF03417 YP_001077185.1 similar to ATP-binding component of ABC transporters YP_001077186.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine YP_001077187.1 similar to periplasmic-binding component of ABC transporters YP_001077190.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787 YP_001077192.1 identified by match to protein family HMM PF00494 YP_001077194.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001077195.1 identified by match to protein family HMM PF04509 YP_001077196.1 identified by match to protein family HMM PF00072 YP_001077198.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001077199.1 identified by match to protein family HMM PF03358 YP_001077201.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_001077203.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014 YP_001077205.1 identified by match to protein family HMM PF01656 YP_001077206.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180