-- dump date   	20120504_140648
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003162849.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein
YP_003162850.1	PFAM: transposase Tn3 family protein; KEGG: asa:ASA_P4G106 TnpA transposase
YP_003162851.1	KEGG: eba:p1B6 transposase
YP_003162852.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein
YP_003162853.1	KEGG: eba:p1D1 hypothetical protein
YP_003162854.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein
YP_003162855.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: psp:PSPPH_B0055 addiction module toxin, RelE/StbE family
YP_003162856.1	KEGG: psp:PSPPH_B0054  TnpA repressor protein
YP_003162857.1	KEGG: dar:Daro_2615 hypothetical protein
YP_003162858.1	KEGG: tbd:Tbd_0144 hypothetical protein
YP_003162859.1	KEGG: bja:blr4113 hypothetical protein
YP_003162860.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpb:RPB_4294 heavy metal efflux pump CzcA
YP_003162861.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rpt:Rpal_4973 efflux transporter RND family, MFP subunit
YP_003162862.1	PFAM: high-affinity nickel-transporter; KEGG: bvi:Bcep1808_7462 high-affinity nickel-transporter
YP_003162863.1	PFAM: protein of unknown function DUF156; KEGG: vei:Veis_2756 protein of unknown function DUF156
YP_003162864.1	PFAM: Resolvase domain; KEGG: amr:AM1_H0028 resolvase, N-terminal domain
YP_003162865.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: dar:Daro_2256 MerR family transcriptional regulator
YP_003162867.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2257 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_003162868.1	KEGG: dar:Daro_2621 hypothetical protein
YP_003162869.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_2628 outer membrane efflux protein
YP_003162870.1	TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dar:Daro_2627 secretion protein HlyD
YP_003162871.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2626 heavy metal efflux pump CzcA
YP_003162872.1	KEGG: dar:Daro_2615 hypothetical protein
YP_003162873.1	PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_2625 nitrogen regulatory protein P-II
YP_003162875.1	KEGG: sus:acid_1919 protein of unknown function DUF132
YP_003162876.1	KEGG: sus:acid_1920 hypothetical protein
YP_003162877.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nmu:Nmul_B2807 phage integrase
YP_003162878.1	KEGG: vei:Veis_4348 hypothetical protein
YP_003162879.1	PFAM: protein of unknown function DUF891; KEGG: eba:ebB4 hypothetical protein
YP_003162880.1	PFAM: cobyrinic acid ac-diamide synthase; KEGG: xcv:XCVb0021 plasmid partitioning-family protein
YP_003162882.1	KEGG: rsq:Rsph17025_4401 plasmid replication initiator protein-like protein
YP_003162884.1	KEGG: ajs:Ajs_4307 hypothetical protein
YP_003162885.1	KEGG: cti:RALTA_p0592 transposase, IS21 family
YP_003162886.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: shn:Shewana3_4323 MerR family transcriptional regulator
YP_003162887.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_3462 heavy metal translocating P-type ATPase
YP_003162888.1	TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase PA-phosphatase related; peptidase A8 signal peptidase II; KEGG: shn:Shewana3_4320 Signal peptidase II. Aspartic peptidase. MEROPS family A08
YP_003162889.1	PFAM: Resolvase domain; KEGG: xac:XACb0061 invertase recombinase-like protein
YP_003162890.1	KEGG: sme:SMa2167 hypothetical protein
YP_003162891.1	KEGG: mag:amb3185 hypothetical protein
YP_003162892.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: net:Neut_2584 cobyrinic acid a,c-diamide synthase
YP_003162893.1	KEGG: net:Neut_2585 hypothetical protein
YP_003162894.1	KEGG: pna:Pnap_2499 hypothetical protein
YP_003162895.1	KEGG: rpe:RPE_1775 hypothetical protein
YP_003162896.1	TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mfa:Mfla_1070 integration host factor, beta subunit
YP_003162897.1	KEGG: ajs:Ajs_4307 hypothetical protein
YP_003162898.1	KEGG: ptr:467889 zinc finger protein 597
YP_003162899.1	KEGG: ddi:DDBDRAFT_0204634 hypothetical protein
YP_003162901.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: reu:Reut_D6519 resolvase
YP_003162902.1	PFAM: SpoVT/AbrB domain protein; KEGG: abo:ABO_2076 hypothetical protein
YP_003162903.1	PFAM: PilT protein domain protein; KEGG: dac:Daci_3757 PilT protein domain protein
YP_003162904.1	KEGG: pde:Pden_0112 hypothetical protein
YP_003162905.1	KEGG: pde:Pden_0111 hypothetical protein
YP_003162906.1	KEGG: pol:Bpro_1540 hypothetical protein
YP_003162907.1	KEGG: bpl:BURPS1106A_0094 hypothetical protein
YP_003162909.1	PFAM: helix-turn-helix domain protein; KEGG: bpl:BURPS1106A_0095 transcriptional regulator, XRE family
YP_003162910.1	KEGG: bpl:BURPS1106A_0096 hypothetical protein
YP_003162911.1	PFAM: transposase Tn3 family protein; KEGG: asa:ASA_P4G106 TnpA transposase
YP_003162912.1	PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein
YP_003162913.1	TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase PA-phosphatase related; peptidase A8 signal peptidase II; KEGG: shn:Shewana3_4320 Signal peptidase II. Aspartic peptidase. MEROPS family A08
YP_003162914.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_3462 heavy metal translocating P-type ATPase
YP_003162915.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sfr:Sfri_3461 transcriptional regulator, MerR family protein
YP_003162916.1	KEGG: bpl:BURPS1106A_0096 hypothetical protein
YP_003162918.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003162919.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003162920.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003162921.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003162922.1	PFAM: ExsB family protein; KEGG: mlo:mll6423 hypothetical protein
YP_003162923.1	KEGG: sat:SYN_00273 nitroreductase family protein
YP_003162924.1	KEGG: mlo:mll6426 hypothetical protein
YP_003162925.1	KEGG: reu:Reut_D6518 phage DNA methylase
YP_003162926.1	KEGG: pna:Pnap_4763 hypothetical protein
YP_003162927.1	KEGG: xcb:XC_2599 hypothetical protein
YP_003162928.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: xcb:XC_2600 hypothetical protein
YP_003165218.1	type IV secretion system VirD4 family
YP_003165298.1	type IV secretion system ATPase VirB4 family
YP_003165302.1	TrbA repressor
YP_003165305.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_003165306.1	KEGG: dar:Daro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain
YP_003165307.1	negatively supercoils closed circular double-stranded DNA
YP_003165308.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_003165309.1	KEGG: azo:azo3573 hypothetical protein
YP_003165310.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: dar:Daro_4042 ExsB
YP_003165311.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase
YP_003165312.1	PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: psa:PST_1004 probable two-component response regulator
YP_003165313.1	PFAM: RNA-binding S4 domain protein; KEGG: tbd:Tbd_0509 RNA-binding S4 protein
YP_003165314.1	KEGG: reh:H16_A3595 hypothetical protein
YP_003165315.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cvi:CV_0231 probable hemolysin
YP_003165316.1	catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis
YP_003165317.1	PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_3668 integral membrane protein TerC
YP_003165318.1	PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_3533 lytic transglycosylase, catalytic
YP_003165319.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_003165320.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_003165321.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_003165322.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rru:Rru_A0873 hypothetical protein
YP_003165325.1	KEGG: acr:Acry_2861 hypothetical protein
YP_003165328.1	PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A0870 OmpA/MotB
YP_003165329.1	KEGG: rru:Rru_A0876 hypothetical protein
YP_003165330.1	KEGG: dar:Daro_3598 hypothetical protein
YP_003165331.1	PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_3597 OmpA/MotB
YP_003165332.1	PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20
YP_003165333.1	PFAM: 17 kDa surface antigen; KEGG: bur:Bcep18194_C6770 hypothetical protein
YP_003165334.1	PFAM: thiamine biosynthesis protein ThiC; KEGG: dar:Daro_3921 thiamine biosynthesis protein ThiC
YP_003165335.1	KEGG: rfr:Rfer_1850 hypothetical protein
YP_003165336.1	KEGG: rfr:Rfer_1851 hypothetical protein
YP_003165337.1	PFAM: cell wall hydrolase/autolysin; KEGG: dar:Daro_0043 cell wall hydrolase/autolysin
YP_003165338.1	PFAM: Domain of unknown function DUF1840; KEGG: cti:RALTA_A0101 hypothetical protein
YP_003165339.1	PFAM: pseudouridine synthase; KEGG: bmu:Bmul_0808 pseudouridine synthase
YP_003165340.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eba:ebA2966 transcriptional regulator, LysR family
YP_003165341.1	decatenates replicating daughter chromosomes
YP_003165342.1	PFAM: protein of unknown function DUF494; KEGG: eba:ebA2962 hypothetical protein
YP_003165343.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dar:Daro_0019 smf protein
YP_003165344.1	PFAM: Peptidoglycan-binding LysM; KEGG: dar:Daro_0020 peptidoglycan-binding LysM
YP_003165345.1	KEGG: dar:Daro_0021 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_003165346.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_003165347.1	PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_0023 heat shock protein HtpX
YP_003165348.1	KEGG: dar:Daro_0027 hypothetical protein
YP_003165349.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tbd:Tbd_1114 cation efflux protein
YP_003165350.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: dar:Daro_0028 Fmu, rRNA SAM-dependent methyltransferase
YP_003165351.1	KEGG: dar:Daro_0029 probable proline rich signal peptide protein
YP_003165352.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dar:Daro_0030 multi-sensor signal transduction histidine kinase
YP_003165353.1	PFAM: response regulator receiver; KEGG: dar:Daro_0031 helix-turn-helix, fis-type
YP_003165354.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_003165355.1	PFAM: cation transporter; KEGG: tbd:Tbd_0022 trk system potassium uptake membrane protein
YP_003165356.1	PFAM: cation transporter; KEGG: eba:ebA2824 cation transport protein
YP_003165357.1	PFAM: protein of unknown function DUF1538; KEGG: sun:SUN_1865 hypothetical protein
YP_003165358.1	KEGG: aeh:Mlg_0660 hypothetical protein
YP_003165359.1	PFAM: CBS domain containing protein; KEGG: aeh:Mlg_0661 putative signal-transduction protein with CBS domains
YP_003165361.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_003165362.1	KEGG: dar:Daro_0033 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_003165363.1	PFAM: Ppx/GppA phosphatase; KEGG: abo:ABO_2461 hypothetical protein
YP_003165364.1	KEGG: dar:Daro_2845 hypothetical protein
YP_003165365.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0035 major facilitator superfamily MFS_1
YP_003165366.1	PFAM: ROK family protein; KEGG: dar:Daro_0037 N-acetylglucosamine kinase
YP_003165367.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: cvi:CV_4127 probable dehydrogenase
YP_003165368.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: aav:Aave_0951 transferase hexapeptide repeat containing protein
YP_003165369.1	PFAM: FAD dependent oxidoreductase; KEGG: aba:Acid345_3314 FAD dependent oxidoreductase
YP_003165370.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: glo:Glov_1506 DegT/DnrJ/EryC1/StrS aminotransferase
YP_003165371.1	PFAM: glycosyl transferase family 2; KEGG: bav:BAV0086 glycosyl transferase
YP_003165372.1	PFAM: polysaccharide biosynthesis protein; KEGG: bav:BAV0084 lipopolysaccharide biosynthesis protein
YP_003165373.1	KEGG: ade:Adeh_1209 hypothetical protein
YP_003165374.1	PFAM: glutamine amidotransferase class-II; KEGG: bav:BAV0087 lipopolysaccharide biosynthesis protein
YP_003165376.1	KEGG: pth:PTH_1110 hypothetical protein
YP_003165377.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003165378.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003165379.1	KEGG: nha:Nham_2789 hypothetical protein
YP_003165381.1	PFAM: regulatory protein MerR; Resolvase domain; Recombinase; KEGG: bpt:Bpet1409 transposase
YP_003165382.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003165383.1	PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase
YP_003165384.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003165385.1	KEGG: eba:ebD46 hypothetical protein, possibly transposase fragment
YP_003165386.1	PFAM: IS66 Orf2 family protein; KEGG: eba:ebB55 transposase, fragment
YP_003165387.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003165388.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003165389.1	PFAM: transposase IS66; KEGG: eba:ebA5523 transposase
YP_003165390.1	KEGG: bav:BAV0082 lipopolysaccharide biosynthesis protein
YP_003165391.1	PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family
YP_003165392.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003165393.1	PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase
YP_003165394.1	PFAM: polysaccharide biosynthesis protein; KEGG: ajs:Ajs_3022 polysaccharide biosynthesis protein
YP_003165395.1	PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family
YP_003165396.1	KEGG: eba:ebA3230 transposase
YP_003165397.1	PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1
YP_003165398.1	KEGG: pap:PSPA7_1978 LPS biosynthesis protein WbpG
YP_003165399.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_003165400.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_003165401.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pen:PSEEN1500 polysaccharide biosynthesis protein; O-antigen biosynthesis protein
YP_003165402.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: ppg:PputGB1_1374 NAD-dependent epimerase/dehydratase
YP_003165403.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN1502 UDP-N-acetylglucosamine 2-epimerase Wbjd
YP_003165404.1	PFAM: glycosyl transferase group 1; KEGG: pap:PSPA7_1983 glycosyltransferase
YP_003165405.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase
YP_003165406.1	PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase
YP_003165407.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mms:mma_2254 nucleoside-diphosphate sugar epimerases
YP_003165408.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: xac:XAC1695 hypothetical protein
YP_003165410.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: tbd:Tbd_2023 response regulator receiver modulated diguanylate cyclase
YP_003165411.1	KEGG: dar:Daro_3211 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type
YP_003165412.1	PFAM: manganese and iron superoxide dismutase; KEGG: dar:Daro_3212 manganese and iron superoxide dismutase
YP_003165413.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: azo:azo3385 single-strand DNA-binding protein
YP_003165414.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: eba:ebA3858 putative MFS family transporter
YP_003165415.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dar:Daro_0473 excinuclease ABC subunit A
YP_003165416.1	PFAM: histone family protein DNA-binding protein; KEGG: tbd:Tbd_0007 histone-like DNA-binding protein
YP_003165417.1	KEGG: pnu:Pnuc_1628 hypothetical protein
YP_003165418.1	PFAM: transposase IS4 family protein; KEGG: dge:Dgeo_3112 transposase IS4 family protein
YP_003165419.1	KEGG: dar:Daro_1156 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003165420.1	KEGG: pnu:Pnuc_0542 hypothetical protein
YP_003165421.1	PFAM: transcriptional regulator domain protein; KEGG: mpt:Mpe_A1734 ATPase-like protein
YP_003165423.1	KEGG: rso:RS02287 hypothetical protein
YP_003165424.1	KEGG: rpt:Rpal_2539 hypothetical protein
YP_003165425.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bph:Bphy_3507 RND efflux system, outer membrane lipoprotein, NodT family
YP_003165426.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bph:Bphy_3506 efflux transporter, RND family, MFP subunit
YP_003165427.1	PFAM: acriflavin resistance protein; KEGG: bph:Bphy_3505 acriflavin resistance protein
YP_003165428.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: azc:AZC_0320 alcohol dehydrogenase
YP_003165429.1	PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase
YP_003165430.1	PFAM: Patatin; KEGG: sfu:Sfum_1455 patatin
YP_003165431.1	PFAM: protein of unknown function UPF0118; KEGG: min:Minf_0718 predicted permease, member of the PurR regulon
YP_003165432.1	PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein
YP_003165433.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_0201 enoyl-(acyl carrier protein) reductase
YP_003165434.1	PFAM: EAL domain protein; KEGG: bbr:BB3116 hypothetical protein
YP_003165435.1	TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2258 heavy metal sensor kinase
YP_003165436.1	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0422 two component heavy metal response transcriptional regulator, winged helix family
YP_003165437.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein
YP_003165438.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_0412 secretion protein HlyD
YP_003165439.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA
YP_003165440.1	KEGG: rde:RD1_1403 hypothetical protein
YP_003165442.1	PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: bfs:BF1216 putative L-serine dehydratase
YP_003165444.1	PFAM: Glutathione S-transferase domain; KEGG: oan:Oant_1991 glutathione S-transferase domain protein
YP_003165445.1	KEGG: amr:AM1_5108 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003165446.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GntR domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dvl:Dvul_1149 PAS/PAC sensor signal transduction histidine kinase
YP_003165447.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: vpa:VPA0790 putative YhfP protein
YP_003165448.1	PFAM: outer membrane efflux protein; KEGG: mms:mma_3050 outer membrane cation efflux system protein
YP_003165449.1	KEGG: mrd:Mrad2831_2533 efflux transporter, RND family, MFP subunit
YP_003165450.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_1747 hypothetical protein
YP_003165451.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_1746 heavy metal efflux pump CzcA
YP_003165452.1	KEGG: tbd:Tbd_1745 hypothetical protein
YP_003165453.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_2663 RND efflux system, outer membrane lipoprotein, NodT family
YP_003165454.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_1076 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_003165455.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_2665 efflux transporter, RND family, MFP subunit
YP_003165456.1	PFAM: portal protein; KEGG: bph:Bphy_7142 phage portal protein, HK97 family
YP_003165457.1	PFAM: peptidase S49; KEGG: bph:Bphy_7143 peptidase S49
YP_003165458.1	KEGG: dar:Daro_3104 hypothetical protein
YP_003165459.1	PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family
YP_003165460.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003165461.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003165462.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003165463.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003165464.1	PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase
YP_003165465.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cph:Cpha266_1254 peptidase C14, caspase catalytic subunit P20
YP_003165466.1	KEGG: pla:Plav_3056 hypothetical protein
YP_003165467.1	PFAM: GTP-binding protein HSR1-related; KEGG: mpt:Mpe_A1439 hypothetical protein
YP_003165468.1	KEGG: mpt:Mpe_A1440 hypothetical protein
YP_003165469.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bra:BRADO3979 conserved hypothetical protein; putative peptidase (caspase-like)
YP_003165470.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aeh:Mlg_1464 cobyrinic acid a,c-diamide synthase
YP_003165471.1	PFAM: phospholipase/Carboxylesterase; KEGG: azo:azo2859 probable carboxylesterase
YP_003165472.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bra:BRADO2458 putative 3-isopropylmalate dehydrogenase (LeuB)
YP_003165473.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fps:FP1733 Cys/Met metabolism PLP-dependent enzyme
YP_003165474.1	PFAM: transposase IS66; KEGG: fra:Francci3_1922 transposase IS66
YP_003165475.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003165476.1	KEGG: pna:Pnap_4966 hypothetical protein
YP_003165477.1	KEGG: pna:Pnap_4965 hypothetical protein
YP_003165478.1	KEGG: mms:mma_2737 hypothetical protein
YP_003165479.1	PFAM: Resolvase domain; Recombinase; KEGG: mms:mma_2738 site-specific integrase/recombinase protein
YP_003165480.1	KEGG: neu:NE2540 putative bacteriophage related protein
YP_003165481.1	KEGG: reu:Reut_B4632 hypothetical protein
YP_003165482.1	KEGG: reu:Reut_B4633 putative periplasmic protein
YP_003165483.1	PFAM: transposase IS4 family protein; KEGG: eba:p2A221 transposase
YP_003165484.1	PFAM: sulfatase; KEGG: rba:RB3877 aryl-sulfate sulphohydrolase
YP_003165485.1	KEGG: rba:RB6740 nonspecific acid phosphatase precursor
YP_003165486.1	KEGG: mms:mma_2427 hypothetical protein
YP_003165487.1	KEGG: reu:Reut_B4633 putative periplasmic protein
YP_003165488.1	KEGG: reu:Reut_B4632 hypothetical protein
YP_003165489.1	PFAM: Integrase catalytic region; KEGG: pna:Pnap_0429 integrase, catalytic region
YP_003165490.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_0430 transposase IS3/IS911 family protein
YP_003165491.1	PFAM: integrase family protein; KEGG: eba:ebA2691 phage-related integrase
YP_003165492.1	PFAM: plasmid maintenance system killer; KEGG: bch:Bcen2424_3084 plasmid maintenance system killer
YP_003165493.1	TIGRFAM: addiction module antidote protein, HigA family; KEGG: bcm:Bcenmc03_3101 putative plasmid maintenance system antidote protein, XRE family
YP_003165494.1	KEGG: sus:Acid_6259 hypothetical protein
YP_003165495.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF
YP_003165496.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_0656 UBA/ThiF-type NAD/FAD binding fold
YP_003165497.1	PFAM: metal-dependent phosphohydrolase HD sub domain; Hpt domain protein; KEGG: dar:Daro_0657 metal-dependent phosphohydrolase, HD subdomain:Hpt
YP_003165498.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dar:Daro_3469 peptidylprolyl isomerase, FKBP-type
YP_003165499.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eba:ebA4056 propable 16S pseudouridylate synthase
YP_003165500.1	KEGG: dar:Daro_0044 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_003165501.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_003165502.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: swd:Swoo_2828 diguanylate cyclase
YP_003165503.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rfr:Rfer_0614 multiple antibiotic resistance (MarC)-related proteins
YP_003165504.1	PFAM: coenzyme A transferase; KEGG: mex:Mext_2071 coenzyme A transferase
YP_003165505.1	PFAM: Sporulation domain protein
YP_003165507.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_1832 sulfate transport system sulfate-binding protein
YP_003165508.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1335 sulfate transport system permease protein probably
YP_003165509.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_0813 sulfate ABC transporter, permease protein
YP_003165510.1	KEGG: azo:azo1333 putative sulfate transport ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase
YP_003165511.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2129 transcriptional regulator CysB-like protein
YP_003165512.1	KEGG: cpc:Cpar_0602 hypothetical protein
YP_003165513.1	SMART: helix-turn-helix domain protein; KEGG: ypi:YpsIP31758_0889 putative transcriptional regulator
YP_003165514.1	KEGG: dar:Daro_3342 hypothetical protein
YP_003165515.1	PFAM: acriflavin resistance protein; KEGG: dar:Daro_3343 acriflavin resistance protein
YP_003165516.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3344 secretion protein HlyD
YP_003165517.1	PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_3094 Gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03
YP_003165518.1	PFAM: protein of unknown function DUF1615; KEGG: cvi:CV_1672 hypothetical protein
YP_003165519.1	PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase
YP_003165521.1	KEGG: xom:XOO_2998 hypothetical protein
YP_003165522.1	PFAM: Domain of unknown function DUF1814; KEGG: xom:XOO_2997 hypothetical protein
YP_003165523.1	KEGG: rca:Rcas_1875 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase
YP_003165524.1	KEGG: dar:Daro_1633 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_003165526.1	KEGG: dar:Daro_3751 hypothetical protein
YP_003165527.1	PFAM: band 7 protein; KEGG: dar:Daro_3752 putative transmembrane protein
YP_003165528.1	PFAM: protein of unknown function DUF350; KEGG: dar:Daro_3753 protein of unknown function DUF350
YP_003165529.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_003165530.1	KEGG: dar:Daro_3757 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase
YP_003165531.1	KEGG: dar:Daro_3758 helix-turn-helix, fis-type:nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003165532.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3759 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003165533.1	KEGG: dar:Daro_3762 hypothetical protein
YP_003165534.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dar:Daro_3763 L-glutamine synthetase
YP_003165535.1	SMART: Rhodanese domain protein; KEGG: eba:ebA4122 rhodanese-like protein
YP_003165536.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_003165537.1	PFAM: glycosyl transferase family 2; KEGG: nmu:Nmul_A0297 glycosyl transferase, family 2
YP_003165538.1	PFAM: Hsp33 protein; KEGG: tbd:Tbd_0750 disulfide bond chaperone, HSP33 family
YP_003165539.1	PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_2750 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_003165540.1	KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase
YP_003165541.1	KEGG: pna:Pnap_1105 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_003165542.1	KEGG: pna:Pnap_1104 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain
YP_003165543.1	KEGG: pna:Pnap_1103 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_003165544.1	PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: dar:Daro_3706 hypothetical protein
YP_003165545.1	PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: eba:ebA4101 predicted AAA ATPase superfamily
YP_003165546.1	PFAM: MltA domain protein; 3D domain protein; KEGG: eba:ebA4100 membrane-bound lytic murein transglycosylase A
YP_003165547.1	PFAM: Rh family protein/ammonium transporter; KEGG: dar:Daro_3703 Rh-like protein/ammonium transporter
YP_003165548.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_003165549.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dar:Daro_4131 5-formyltetrahydrofolate cyclo-ligase
YP_003165550.1	PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_4132 lytic transglycosylase, catalytic
YP_003165551.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: dar:Daro_4134 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase:NmrA-like
YP_003165552.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dar:Daro_4135 metal dependent phosphohydrolase
YP_003165553.1	PFAM: protein of unknown function DUF185; KEGG: dar:Daro_4140 protein of unknown function DUF185
YP_003165555.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo0486 pteridine reductase
YP_003165556.1	PFAM: PP-loop domain protein; KEGG: dar:Daro_4143 PP-loop
YP_003165557.1	PFAM: Forkhead-associated protein; KEGG: dar:Daro_4144 forkhead-associated
YP_003165558.1	KEGG: dar:Daro_0617 phosphoribosyltransferase
YP_003165559.1	KEGG: dar:Daro_0618 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_003165560.1	TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0619 biotin synthesis protein
YP_003165561.1	with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit
YP_003165562.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dar:Daro_1620 acetolactate synthase catalytic subunit
YP_003165563.1	PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1460 hypothetical protein
YP_003165564.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_0532 thiol peroxidase (atypical 2-Cys peroxiredoxin)
YP_003165565.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dar:Daro_0804 regulatory proteins, IclR
YP_003165566.1	PFAM: protein of unknown function UPF0153; KEGG: bpt:Bpet3113 hypothetical protein
YP_003165567.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_003165568.1	PFAM: protein of unknown function UPF0227; KEGG: dar:Daro_3910 hypothetical protein
YP_003165569.1	PFAM: ribonuclease II; KEGG: dar:Daro_3909 ribonuclease II
YP_003165570.1	TIGRFAM: TonB family protein; KEGG: dar:Daro_3908 TonB, C-terminal
YP_003165571.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: dar:Daro_3907 shikimate dehydrogenase
YP_003165572.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_003165573.1	KEGG: rfr:Rfer_3310 hypothetical protein
YP_003165574.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mms:mma_1202 ATP-dependent RNA helicase
YP_003165575.1	PFAM: Chorismate lyase; KEGG: eba:ebA2295 chorismate:pyruvate lyase, 4-hydroxybenzoate synthetase
YP_003165576.1	PFAM: protein of unknown function DUF192; KEGG: dar:Daro_3253 protein of unknown function DUF192
YP_003165577.1	KEGG: spu:576916 hypothetical LOC576916
YP_003165578.1	PFAM: cytochrome d1 heme region; KEGG: dar:Daro_3260 cytochrome d1, heme region
YP_003165579.1	PFAM: Radical SAM domain protein; KEGG: dar:Daro_3261 radical SAM
YP_003165580.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 probable transmembrane protein
YP_003165581.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: dar:Daro_3768 phospholipase D/transphosphatidylase
YP_003165582.1	PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dar:Daro_3769 glutamyl-Q tRNA(Asp) synthetase
YP_003165583.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_003165584.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dar:Daro_0628 HAD-superfamily hydrolase subfamily IA, variant 3:pyrimidine 5-nucleotidase
YP_003165585.1	KEGG: pau:PA14_07500 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003165586.1	PFAM: acyltransferase 3; KEGG: rme:Rmet_4573 acyltransferase 3
YP_003165587.1	PFAM: delta-aminolevulinic acid dehydratase; KEGG: eba:ebA1071 delta-aminolevulinic acid dehydratase
YP_003165588.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_003165589.1	PFAM: cytochrome c class I; KEGG: dar:Daro_0624 cytochrome c, class I
YP_003165590.1	PFAM: CBS domain containing protein; KEGG: dar:Daro_0623 CBS
YP_003165591.1	PFAM: Phosphoglycerate mutase; KEGG: dar:Daro_0602 phosphoglycerate mutase
YP_003165592.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo2931 hypothetical protein
YP_003165593.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: azo:azo2930 probable aldehyde ferredoxin oxidoreductase
YP_003165594.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3945 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003165595.1	PFAM: thiamineS protein; KEGG: lch:Lcho_1819 thiamineS protein
YP_003165597.1	KEGG: dar:Daro_0806 AAA ATPase, central region; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_003165598.1	PFAM: conserved hypothetical protein; KEGG: dar:Daro_0807 conserved hypothetical protein 103
YP_003165599.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_003165600.1	KEGG: dar:Daro_0809 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_003165601.1	PFAM: Cytochrome b/b6 domain; KEGG: dar:Daro_0810 cytochrome b/b6, N-terminal:cytochrome b/b6, C-terminal
YP_003165602.1	PFAM: cytochrome c1; KEGG: dar:Daro_0811 cytochrome c1
YP_003165603.1	PFAM: Glutathione S-transferase domain; KEGG: dar:Daro_0812 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal
YP_003165604.1	PFAM: Stringent starvation protein B; KEGG: dar:Daro_0813 ClpXP protease specificity-enhancing factor
YP_003165605.1	KEGG: cvi:CV_1155 hypothetical protein
YP_003165607.1	TIGRFAM: addiction module antidote protein; KEGG: dvl:Dvul_1443 putative transcriptional regulator
YP_003165609.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: dar:Daro_4121 protein of unknown function DUF224, cysteine-rich region:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_003165610.1	KEGG: pol:Bpro_0503 hypothetical protein
YP_003165611.1	PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 putative transmembrane protein
YP_003165612.1	PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_0505 hypothetical protein
YP_003165613.1	KEGG: pol:Bpro_0506 hypothetical protein
YP_003165614.1	KEGG: dar:Daro_3118 hypothetical protein
YP_003165615.1	KEGG: acr:Acry_3541 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase
YP_003165616.1	PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_4120 histidine triad (HIT) protein
YP_003165617.1	KEGG: dar:Daro_4119 hypothetical protein
YP_003165618.1	KEGG: xac:XAC4267 hypothetical protein
YP_003165619.1	PFAM: regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family
YP_003165620.1	KEGG: bch:Bcen2424_6767 outer membrane autotransporter barrel domain
YP_003165623.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_4199 cobalamin B12-binding:radical SAM
YP_003165624.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: dar:Daro_4197 monooxygenase, FAD-binding:FAD dependent oxidoreductase:tryptophan halogenase
YP_003165625.1	KEGG: dar:Daro_4196 endoribonuclease L-PSP
YP_003165626.1	PFAM: MltA-interacting MipA family protein; KEGG: dar:Daro_4195 putative outer membrane protein
YP_003165627.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_4194 phospholipid/glycerol acyltransferase
YP_003165628.1	PFAM: glycosyl transferase family 2; KEGG: dar:Daro_4193 glycosyl transferase, family 2
YP_003165629.1	PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_1412 sodium/hydrogen exchanger
YP_003165630.1	PFAM: N-6 DNA methylase; KEGG: aav:Aave_3359 N-6 DNA methylase
YP_003165631.1	PFAM: AAA-4 family protein; KEGG: tbd:Tbd_2681 predicted transcriptional regulator
YP_003165633.1	KEGG: aeh:Mlg_1791 restriction modification system DNA specificity domain
YP_003165634.1	KEGG: cpc:Cpar_0215 hypothetical protein
YP_003165636.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003165637.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003165638.1	PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: xau:Xaut_0423 protein of unknown function DUF1214
YP_003165639.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: smr:Smar_0994 MazG nucleotide pyrophosphohydrolase
YP_003165641.1	PFAM: transposase IS4 family protein; KEGG: eba:p2A146 probable transposase
YP_003165642.1	KEGG: mac:MA4317 phycocyanin alpha phycocyanobilin lyase related protein
YP_003165644.1	KEGG: mca:MCA0474 ATP-dependent DNA helicase, UvrD/REP family
YP_003165645.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: vei:Veis_4167 filamentation induced by cAMP protein Fic
YP_003165646.1	KEGG: mca:MCA0474 ATP-dependent DNA helicase, UvrD/REP family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: UvrD/REP helicase; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_003165647.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_003165648.1	KEGG: dar:Daro_4187 hypothetical protein
YP_003165649.1	KEGG: dar:Daro_4186 hypothetical protein
YP_003165650.1	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_003165651.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4180 hypothetical protein
YP_003165652.1	PFAM: polysaccharide deacetylase; KEGG: dar:Daro_4179 polysaccharide deacetylase
YP_003165653.1	KEGG: dar:Daro_4178 hypothetical protein
YP_003165654.1	KEGG: dar:Daro_4177 probable transmembrane protein
YP_003165655.1	KEGG: dar:Daro_4176 hypothetical protein
YP_003165656.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: dar:Daro_4175 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis
YP_003165657.1	KEGG: dar:Daro_4174 hypothetical protein
YP_003165658.1	KEGG: dar:Daro_4173 AMP-dependent synthetase and ligase
YP_003165659.1	KEGG: dar:Daro_4172 transmembrane protein
YP_003165660.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_003165661.1	PFAM: Beta-ketoacyl synthase; KEGG: dar:Daro_4170 3-oxoacyl-[acyl-carrier-protein] synthase II
YP_003165662.1	PFAM: phosphopantetheine-binding; KEGG: dar:Daro_4169 phosphopantetheine-binding
YP_003165663.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: azo:azo2191 probable virulence factor
YP_003165664.1	PFAM: PEBP family protein; KEGG: dar:Daro_0707 phospholipid-binding protein, PBP family
YP_003165665.1	KEGG: bta:788954 hypothetical protein LOC788954
YP_003165666.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_003165667.1	PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: azo:azo1473 adenylate kinase
YP_003165668.1	KEGG: dar:Daro_3206 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_003165669.1	PFAM: protein of unknown function DUF343; KEGG: dar:Daro_3207 protein of unknown function DUF343
YP_003165670.1	KEGG: dar:Daro_3208 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase
YP_003165671.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dar:Daro_3209 biopolymer transport protein ExbD/TolR
YP_003165672.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dar:Daro_3210 MotA/TolQ/ExbB proton channel
YP_003165673.1	KEGG: rfr:Rfer_0638 hypothetical protein
YP_003165674.1	KEGG: pna:Pnap_3251 hypothetical protein
YP_003165675.1	KEGG: rfr:Rfer_0640 hypothetical protein
YP_003165676.1	PFAM: heat shock protein DnaJ domain protein; KEGG: rfr:Rfer_0641 heat shock protein DnaJ-like
YP_003165677.1	KEGG: nmu:Nmul_A2539 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase
YP_003165678.1	PFAM: membrane protein of unknown function; KEGG: bpt:Bpet4762 hypothetical protein
YP_003165679.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_003165680.1	KEGG: dar:Daro_0069 hypothetical protein
YP_003165681.1	PFAM: conserved hypothetical protein; KEGG: dar:Daro_0070 hypothetical protein
YP_003165682.1	KEGG: dar:Daro_0071 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_003165683.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_0429 response regulator receiver:transcriptional regulatory protein, C-terminal
YP_003165684.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: dar:Daro_0430 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_003165686.1	PFAM: protein of unknown function DUF188; KEGG: dar:Daro_2879 protein of unknown function DUF188
YP_003165687.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_4157 ATPase, E1-E2 type
YP_003165688.1	KEGG: cre:CHLREDRAFT_141024 hypothetical protein Pfam: Drf_FH1 PROSITE: ALA_RICH GLU_RICH GLY_RICH PRO_RICH NLS_BP
YP_003165689.1	PFAM: transposase IS4 family protein; KEGG: amr:AM1_5147 transposase, IS4 family
YP_003165690.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_003165691.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dar:Daro_0207 diaminopimelate decarboxylase
YP_003165692.1	TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: dar:Daro_0208 frataxin-like
YP_003165693.1	PFAM: Ferritin Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps
YP_003165694.1	PFAM: Carbohydrate-selective porin OprB; KEGG: bpd:BURPS668_0296 carbohydrate porin, OprB family
YP_003165695.1	periplasmic cobalt binding component of the cobalt transport system
YP_003165696.1	catalyzes the ATP-dependent transport of cobalt
YP_003165697.1	PFAM: Ferritin Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps
YP_003165698.1	PFAM: Carbohydrate-selective porin OprB; KEGG: bvi:Bcep1808_5348 carbohydrate-selective porin OprB
YP_003165699.1	KEGG: mpt:Mpe_A1472 hypothetical protein
YP_003165700.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B
YP_003165701.1	PFAM: FeoA family protein; KEGG: dac:Daci_2175 FeoA family protein
YP_003165704.1	KEGG: sse:Ssed_3646 hypothetical protein
YP_003165705.1	KEGG: rfr:Rfer_2680 hypothetical protein
YP_003165706.1	PFAM: iron permease FTR1; KEGG: ppd:Ppro_0822 iron permease FTR1
YP_003165707.1	PFAM: transglutaminase domain protein; KEGG: ppd:Ppro_0821 transglutaminase domain protein
YP_003165708.1	PFAM: protein of unknown function DUF58; KEGG: ppd:Ppro_0820 protein of unknown function DUF58
YP_003165709.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: maq:Maqu_1752 ATPase associated with various cellular activities, AAA_3
YP_003165710.1	PFAM: protein of unknown function DUF1111; KEGG: lbl:LBL_0763 thiol oxidoreductase
YP_003165711.1	KEGG: pcu:pc1077 hypothetical protein
YP_003165712.1	PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ppd:Ppro_0818 type II and III secretion system protein
YP_003165714.1	KEGG: ajs:Ajs_3166 hypothetical protein
YP_003165715.1	PFAM: type II secretion system protein; KEGG: ppd:Ppro_0816 type II secretion system protein
YP_003165716.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_0815 type II secretion system protein E
YP_003165717.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ppd:Ppro_0814 twitching motility protein
YP_003165718.1	KEGG: ppd:Ppro_0813 hypothetical protein
YP_003165719.1	KEGG: ppd:Ppro_0812 hypothetical protein
YP_003165720.1	KEGG: ppd:Ppro_0811 hypothetical protein
YP_003165721.1	KEGG: ppd:Ppro_0810 hypothetical protein
YP_003165722.1	KEGG: ppd:Ppro_0809 hypothetical protein
YP_003165723.1	KEGG: ppd:Ppro_0807 hypothetical protein
YP_003165724.1	KEGG: ppd:Ppro_0806 hypothetical protein
YP_003165725.1	KEGG: eba:ebA4678 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit
YP_003165726.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A2852 putative oxidoreductase protein
YP_003165728.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1
YP_003165729.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_1659 transcriptional regulator, LysR family
YP_003165730.1	KEGG: ppd:Ppro_3601 transposase, IS4 family protein
YP_003165733.1	PFAM: protein of unknown function DUF255; KEGG: afw:Anae109_0984 protein of unknown function DUF255
YP_003165734.1	TIGRFAM: methyltransferase; KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein
YP_003165735.1	PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323
YP_003165736.1	KEGG: vei:Veis_2578 hypothetical protein
YP_003165737.1	PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: ppd:Ppro_2370 Ig family protein
YP_003165738.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2547 ABC transporter related
YP_003165739.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_003165740.1	KEGG: mms:mma_0491 hypothetical protein
YP_003165741.1	KEGG: dar:Daro_0527 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein
YP_003165742.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_003165744.1	KEGG: hau:Haur_1773 hypothetical protein
YP_003165745.1	KEGG: hau:Haur_1774 hypothetical protein
YP_003165746.1	KEGG: hau:Haur_1775 hypothetical protein
YP_003165747.1	KEGG: dme:Dmel_CG32656 CG32656
YP_003165748.1	KEGG: hau:Haur_1778 hypothetical protein
YP_003165749.1	KEGG: met:M446_6067 hypothetical protein
YP_003165750.1	TIGRFAM: YD repeat protein; KEGG: afw:Anae109_2325 YD repeat protein
YP_003165751.1	KEGG: hau:Haur_1780 hypothetical protein
YP_003165752.1	KEGG: rci:RCIX1671 hypothetical protein
YP_003165755.1	KEGG: hau:Haur_1783 gpW/GP25 family protein
YP_003165756.1	KEGG: rci:RCIX1676 hypothetical protein
YP_003165757.1	KEGG: rci:RCIX1677 hypothetical protein
YP_003165758.1	KEGG: hau:Haur_1786 hypothetical protein
YP_003165759.1	KEGG: cau:Caur_0299 hypothetical protein
YP_003165760.1	KEGG: mba:Mbar_A2995 hypothetical protein
YP_003165762.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mbu:Mbur_0937 KP-43 peptidase. Serine peptidase. MEROPS family S08A
YP_003165763.1	PFAM: PGAP1 family protein; KEGG: aba:Acid345_4373 PGAP1-like
YP_003165764.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_0058 diguanylate cyclase/phosphodiesterase
YP_003165765.1	KEGG: dar:Daro_4085 ABC-type phosphate/phosphonate transport system periplasmic component-like protein
YP_003165766.1	PFAM: triosephosphate isomerase; KEGG: drm:Dred_2989 triose-phosphate isomerase
YP_003165767.1	PFAM: phosphoglycerate kinase; KEGG: ote:Oter_3826 phosphoglycerate kinase
YP_003165768.1	PFAM: Carbamoyltransferase; KEGG: eba:ebA3984 carbamoyltransferase, NodU family
YP_003165769.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: eba:ebA3949 lipid A biosynthesis lauroyl acyltransferase
YP_003165770.1	KEGG: dar:Daro_0269 hypothetical protein
YP_003165771.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eba:ebA3764 transcriptional regulator, AraC family
YP_003165772.1	KEGG: dar:Daro_0243 methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein
YP_003165773.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: rfr:Rfer_0716 acetyl-CoA hydrolase/transferase
YP_003165774.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ter:Tery_3999 adenylate/guanylate cyclase
YP_003165775.1	TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: eba:ebA6855 glutamyl-tRNA synthetase
YP_003165776.1	KEGG: dar:Daro_0856 hypothetical protein
YP_003165777.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: dar:Daro_0932 DNA repair protein RecN
YP_003165778.1	PFAM: ATP-NAD/AcoX kinase; KEGG: dar:Daro_0931 ATP-NAD/AcoX kinase
YP_003165779.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_003165780.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_003165781.1	PFAM: cyclic nucleotide-binding; protein of unknown function RIO1; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_0925 cyclic nucleotide-binding:protein kinase
YP_003165782.1	PFAM: GrpE protein; KEGG: dar:Daro_0924 GrpE protein
YP_003165783.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_003165784.1	TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dar:Daro_0922 heat shock protein DnaJ
YP_003165785.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_0920 extracellular ligand-binding receptor
YP_003165786.1	KEGG: dar:Daro_0919 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia
YP_003165787.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_0918 TPR repeat
YP_003165788.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ajs:Ajs_1621 peptidylprolyl isomerase
YP_003165789.1	PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dar:Daro_0915 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_003165790.1	KEGG: dar:Daro_0913 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases
YP_003165791.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: neu:NE2123 ferredoxin-dependent glutamate synthase
YP_003165792.1	KEGG: dar:Daro_2380 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_003165794.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_003165795.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1864 hypothetical protein
YP_003165796.1	KEGG: dar:Daro_2383 hypothetical protein
YP_003165797.1	KEGG: dar:Daro_2384 hypothetical protein
YP_003165798.1	PFAM: MORN repeat-containing protein; peptidase C14 caspase catalytic subunit p20; SMART: Peptidase C14, caspase precursor p45, core; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20
YP_003165799.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: azc:AZC_3466 TPR repeat protein
YP_003165800.1	KEGG: dar:Daro_2833 hypothetical protein
YP_003165801.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer
YP_003165802.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1
YP_003165803.1	PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_2109 OmpA/MotB
YP_003165804.1	TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2968 RarD protein
YP_003165805.1	KEGG: rrs:RoseRS_3253 hypothetical protein
YP_003165806.1	KEGG: mar:MAE_11940 hypothetical protein
YP_003165807.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003165808.1	PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase
YP_003165809.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: shw:Sputw3181_2399 RNA-directed DNA polymerase (reverse transcriptase)
YP_003165810.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: maq:Maqu_4119 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_003165811.1	PFAM: integrase family protein; KEGG: eba:ebA1360 hypothetical protein
YP_003165812.1	KEGG: mar:MAE_35950 hypothetical protein
YP_003165813.1	KEGG: mar:MAE_20750 hypothetical protein
YP_003165814.1	PFAM: protein of unknown function DUF29; KEGG: mca:MCA0580 hypothetical protein
YP_003165815.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: dar:Daro_0180 ribonuclease G
YP_003165816.1	PFAM: peptidase U32; KEGG: eba:ebA2789 peptidase family U32 protein
YP_003165817.1	KEGG: dar:Daro_0175 hypothetical protein
YP_003165818.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_003165819.1	PFAM: protein of unknown function UPF0118; KEGG: ppd:Ppro_0405 protein of unknown function UPF0118
YP_003165820.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_003165821.1	KEGG: dar:Daro_3715 twin-arginine translocation pathway signal
YP_003165822.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0872 hypothetical protein
YP_003165823.1	PFAM: PilT protein domain protein; KEGG: rso:RSc0871 putative plasmid stability-like protein
YP_003165824.1	PFAM: alpha/beta hydrolase fold; KEGG: eba:ebA3472 putative hydrolase
YP_003165825.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase
YP_003165826.1	PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase
YP_003165827.1	PFAM: regulatory protein TetR; KEGG: dar:Daro_3923 transcriptional regulator, TetR family
YP_003165828.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: azo:azo0846 membrane fusion protein
YP_003165829.1	PFAM: acriflavin resistance protein; KEGG: cvi:CV_3924 probable transmembrane drug efflux protein
YP_003165830.1	PFAM: UspA domain protein; KEGG: eba:ebA3574 universal stress protein (Usp)
YP_003165831.1	KEGG: nwi:Nwi_0939 hypothetical protein
YP_003165832.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bpt:Bpet2844 hypothetical protein
YP_003165833.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dar:Daro_0600 TRAP dicarboxylate transporter, DctM subunit
YP_003165834.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mag:amb2584 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
YP_003165835.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: azo:azo2794 probable PmbA protein
YP_003165836.1	PFAM: protein of unknown function DUF615; KEGG: eba:ebA1030 hypothetical protein
YP_003165837.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: azo:azo2792 molybdenum cofactor biosynthesis protein
YP_003165838.1	KEGG: dar:Daro_0594 hypothetical protein
YP_003165839.1	PFAM: thymidylate synthase; KEGG: dar:Daro_0593 thymidylate synthase
YP_003165840.1	PFAM: dihydrofolate reductase region; KEGG: dar:Daro_0579 dihydrofolate reductase
YP_003165841.1	KEGG: dar:Daro_3490 hypothetical protein
YP_003165842.1	KEGG: dar:Daro_3491 hypothetical protein
YP_003165843.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_003165844.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_003165845.1	PFAM: cell division protein FtsA; KEGG: dar:Daro_3494 cell division protein FtsA
YP_003165846.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dar:Daro_3495 cell division protein FtsQ
YP_003165847.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_003165848.1	TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3497 UDP-N-acetylmuramate--L-alanine ligase
YP_003165849.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_003165850.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dar:Daro_3499 cell cycle protein
YP_003165851.1	TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3500 UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_003165852.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_003165853.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3502 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_003165854.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3503 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
YP_003165855.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dar:Daro_3504 peptidoglycan synthetase FtsI
YP_003165856.1	PFAM: cell division protein FtsL; KEGG: dar:Daro_3505 cell division protein, FtsL -like
YP_003165857.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dar:Daro_3506 methyltransferase
YP_003165858.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_003165859.1	KEGG: dar:Daro_0508 probable putative transmembrane protein
YP_003165860.1	KEGG: dar:Daro_0507 hypothetical protein
YP_003165861.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_003165862.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_0504 hypothetical protein
YP_003165863.1	PFAM: protein of unknown function UPF0102; KEGG: dar:Daro_0503 hypothetical protein
YP_003165864.1	PFAM: HIRAN; KEGG: dar:Daro_0502 hypothetical protein
YP_003165865.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_003165866.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: eba:ebA1464 hypothetical protein
YP_003165867.1	PFAM: dihydroneopterin aldolase; KEGG: dar:Daro_0534 dihydroneopterin aldolase
YP_003165868.1	PFAM: protein of unknown function DUF205; KEGG: dar:Daro_0533 acyl-phosphate glycerol-3-phosphate acyltransferase
YP_003165869.1	PFAM: glycoside hydrolase family 24; KEGG: stm:STM1028 lysozyme
YP_003165870.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_003165871.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_4089 hypothetical protein
YP_003165872.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rfr:Rfer_0619 TonB-dependent receptor
YP_003165873.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_A3000 molybdopterin oxidoreductase
YP_003165874.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003165875.1	TIGRFAM: hemerythrin-like metal-binding protein; KEGG: asa:ASA_2981 GGDEF domain protein
YP_003165876.1	PFAM: LrgB family protein; KEGG: azo:azo1154 hypothetical protein
YP_003165877.1	PFAM: LrgA family protein; KEGG: azo:azo1155 hypothetical protein
YP_003165878.1	PFAM: Inorganic pyrophosphatase; KEGG: eba:ebA594 inorganic pyrophosphatase
YP_003165879.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: har:HEAR1492 hypothetical protein
YP_003165881.1	PFAM: Thioredoxin domain; KEGG: reu:Reut_B4067 probable thioredoxin
YP_003165882.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_2957 secretion protein HlyD
YP_003165883.1	PFAM: acriflavin resistance protein; KEGG: dar:Daro_2958 acriflavin resistance protein
YP_003165884.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3021 protein of unknown function DUF404, bacteria N-terminal:protein of unknown function DUF407
YP_003165885.1	PFAM: protein of unknown function DUF403; KEGG: dar:Daro_3020 protein of unknown function DUF403, bacteria
YP_003165886.1	KEGG: azo:azo2560 hypothetical protein
YP_003165887.1	KEGG: dar:Daro_3034 hypothetical protein
YP_003165888.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_003165889.1	PFAM: BolA family protein; KEGG: dar:Daro_3394 BolA-like protein
YP_003165890.1	PFAM: ABC-2 type transporter; KEGG: dar:Daro_3395 ABC-2
YP_003165891.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1306 ATP-binding ABC transporter protein
YP_003165892.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dar:Daro_3397 NTP binding protein (contains STAS domain)
YP_003165893.1	PFAM: toluene tolerance family protein; KEGG: dar:Daro_3398 toluene tolerance
YP_003165894.1	PFAM: VacJ family lipoprotein; KEGG: dar:Daro_3399 VacJ-like lipoprotein
YP_003165895.1	PFAM: Mammalian cell entry related domain protein; KEGG: dar:Daro_3400 mammalian cell entry related
YP_003165896.1	PFAM: protein of unknown function DUF140; KEGG: eba:ebA1312 predicted ABC-type transport system involved in resistance to organic solvents, permease component
YP_003165897.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1313 putative ATP-binding ABC transporter protein
YP_003165898.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3403 helix-turn-helix, fis-type
YP_003165899.1	PFAM: Sporulation domain protein; KEGG: dar:Daro_3404 ATPas
YP_003165900.1	PFAM: type II and III secretion system protein; KEGG: dar:Daro_3405 type II and III secretion system protein
YP_003165901.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_3406 TPR repeat
YP_003165902.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_3407 type II secretion system protein E:general secretory system II, protein E, N-terminal
YP_003165903.1	PFAM: type II secretion system protein; KEGG: dar:Daro_3408 type II secretion system protein
YP_003165904.1	KEGG: dar:Daro_3409 hypothetical protein
YP_003165905.1	KEGG: dar:Daro_3410 hypothetical protein
YP_003165906.1	KEGG: dar:Daro_3411 hypothetical protein
YP_003165907.1	KEGG: azo:azo0798 hypothetical secreted protein
YP_003165908.1	KEGG: tbd:Tbd_0542 hypothetical protein
YP_003165909.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dar:Daro_3414 adenylyl cyclase class-3/4/guanylyl cyclase
YP_003165910.1	SMART: ATP-binding region ATPase domain protein; KEGG: dar:Daro_3415 ATP-binding region, ATPase-like
YP_003165911.1	KEGG: tbd:Tbd_0540 hypothetical protein
YP_003165912.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dar:Daro_3417 potassium efflux system protein
YP_003165913.1	KEGG: dar:Daro_3418 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_003165914.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: eba:ebA1316 conserved hypothetical protein, predicted phosphatase
YP_003165915.1	PFAM: protein of unknown function DUF1239; KEGG: dar:Daro_3420 protein of unknown function DUF1239
YP_003165916.1	TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: dar:Daro_3421 OstA-like protein
YP_003165918.1	TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: dar:Daro_3422 phasin
YP_003165919.1	TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: dar:Daro_3423 phasin
YP_003165920.1	PFAM: molybdopterin binding domain; KEGG: dar:Daro_3424 molybdopterin binding domain
YP_003165921.1	KEGG: dar:Daro_3425 hypothetical protein
YP_003165922.1	KEGG: dar:Daro_3426 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases
YP_003165924.1	KEGG: ecm:EcSMS35_4789 hypothetical protein
YP_003165925.1	KEGG: msi:Msm_0137 putative flagellar protein D/E
YP_003165926.1	KEGG: sfu:Sfum_0807 conserved repeat domain
YP_003165927.1	KEGG: ptr:461413 centromere protein E, 312kDa
YP_003165928.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mlo:mlr0112 hypothetical protein
YP_003165929.1	PFAM: putative transposase; KEGG: sdn:Sden_1136 transposase
YP_003165930.1	KEGG: azo:azo3334 hypothetical protein
YP_003165931.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_003165932.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_003165933.1	PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: dar:Daro_3361 ornithine cyclodeaminase
YP_003165934.1	PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3360 protein phosphatase 2C-like
YP_003165935.1	PFAM: Forkhead-associated protein; KEGG: dar:Daro_3359 forkhead-associated
YP_003165936.1	PFAM: beta-lactamase domain protein; KEGG: dar:Daro_3358 beta-lactamase-like
YP_003165937.1	PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: azo:azo3328 general secretion pathway protein E
YP_003165938.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: azo:azo1147 isocitrate dehydrogenase [NADP]
YP_003165939.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_003165940.1	PFAM: SdiA-regulated domain protein; KEGG: pap:PSPA7_0412 putative transcriptional regulator
YP_003165941.1	KEGG: dar:Daro_3317 xylose isomerase-like TIM barrel; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel
YP_003165942.1	TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: dar:Daro_3318 ATP:cob(I)alamin adenosyltransferase
YP_003165944.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_003165945.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_003165946.1	PFAM: CreA family protein; KEGG: dar:Daro_1905 CreA
YP_003165947.1	KEGG: eba:ebA2549 N6 adenine-specific DNA methyltransferase, N12 class
YP_003165948.1	TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: dar:Daro_0011 glutamate--cysteine ligase GshA
YP_003165949.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_003165950.1	PFAM: ApbE family lipoprotein; KEGG: dar:Daro_0009 ApbE-like lipoprotein
YP_003165951.1	PFAM: PTS system fructose subfamily IIA component; KEGG: dar:Daro_4082 PTS system fructose subfamily IIA component
YP_003165952.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: azo:azo3781 putative phosphocarrier protein HPr
YP_003165953.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dar:Daro_4084 phosphoenolpyruvate--protein phosphotransferase
YP_003165954.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_003165955.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: eba:ebA2809 methionine biosynthesis MetW, subunit of homoserine-O-acetyltransferase
YP_003165956.1	KEGG: azo:azo3975 putative AmpG protein
YP_003165957.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: eba:ebA2814 single-strand selective monofunctional uracil DNA glycosylase
YP_003165958.1	KEGG: dar:Daro_0126 hypothetical protein
YP_003165959.1	KEGG: dar:Daro_0125 hypothetical protein
YP_003165960.1	PFAM: protein of unknown function DUF883 ElaB; KEGG: dar:Daro_0124 protein of unknown function DUF883, ElaB
YP_003165961.1	KEGG: dar:Daro_0123 AP endonuclease, family 1:exodeoxyribonuclease III xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_003165962.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_003165963.1	KEGG: dar:Daro_0121 hypothetical protein
YP_003165964.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: dar:Daro_0120 aspartyl/glutamyl-tRNA amidotransferase subunit B
YP_003165965.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_003165966.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dar:Daro_0117 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
YP_003165967.1	functions in MreBCD complex in some organisms
YP_003165968.1	TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dar:Daro_0115 rod shape-determining protein MreC
YP_003165969.1	TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: dar:Daro_0114 rod shape-determining protein MreD
YP_003165970.1	KEGG: dar:Daro_0113 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain
YP_003165971.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dar:Daro_0112 rod shape-determining protein RodA
YP_003165972.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dar:Daro_0111 rare lipoprotein A
YP_003165973.1	KEGG: dar:Daro_0298 PAS; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003165974.1	PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase
YP_003165975.1	PFAM: GAF domain protein; KEGG: dar:Daro_0298 PAS
YP_003165976.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: dar:Daro_0291 Penicillin-binding protein 6. Serine peptidase. MEROPS family S11
YP_003165977.1	PFAM: protein of unknown function DUF493; KEGG: dar:Daro_0289 protein of unknown function DUF493
YP_003165978.1	TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dar:Daro_0288 lipoate-protein ligase B
YP_003165979.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_003165980.1	KEGG: ajs:Ajs_1504 hypothetical protein
YP_003165981.1	KEGG: rfr:Rfer_2427 hypothetical protein
YP_003165982.1	PFAM: Rare lipoprotein A; KEGG: dar:Daro_3173 rare lipoprotein A
YP_003165983.1	KEGG: reh:H16_A1906 2-methylcitrate synthase 1; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase
YP_003165984.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_003165985.1	KEGG: dar:Daro_2826 hypothetical protein
YP_003165986.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_003165987.1	PFAM: response regulator receiver; KEGG: pol:Bpro_4295 response regulator receiver domain protein (CheY-like)
YP_003165989.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sat:SYN_01953 response regulator with a HTH DNA-binding domain
YP_003165990.1	KEGG: nmu:Nmul_A1709 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003165991.1	KEGG: dar:Daro_2578 hypothetical protein
YP_003165992.1	PFAM: NapC/NirT cytochrome c domain protein; KEGG: dar:Daro_2579 NapC/NirT cytochrome c, N-terminal
YP_003165993.1	PFAM: protein of unknown function DUF86; KEGG: mmw:Mmwyl1_3032 protein of unknown function DUF86
YP_003165994.1	PFAM: DNA polymerase beta domain protein region; KEGG: psa:PST_1417 nucleotidyltransferase family protein
YP_003165995.1	TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: dar:Daro_1405 TPR repeat
YP_003165996.1	PFAM: cytochrome C biogenesis protein; KEGG: rfr:Rfer_0038 cytochrome c biogenesis protein
YP_003165997.1	TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE
YP_003165998.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: dar:Daro_3996 cytochrome c-type biogenesis protein CcmF
YP_003165999.1	PFAM: CcmE/CycJ protein; KEGG: dar:Daro_3995 CcmE/CycJ protein
YP_003166000.1	TIGRFAM: heme exporter protein CcmD; KEGG: dar:Daro_3994 heme exporter protein D
YP_003166001.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pnu:Pnuc_1516 heme exporter protein CcmC
YP_003166002.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB
YP_003166003.1	ATP-binding protein; required for proper cytochrome c maturation
YP_003166004.1	KEGG: azo:azo3798 putative hydrogenase expression/formation protein HupK
YP_003166005.1	TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: rme:Rmet_1535 hydrogenase nickel insertion protein HypA
YP_003166006.1	TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dar:Daro_3978 hydrogenase accessory protein HypB
YP_003166007.1	TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: reh:PHG096 HypF2
YP_003166008.1	TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3967 hydrogenase expression/formation protein (HUPF/HYPC)
YP_003166009.1	TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dar:Daro_3966 hydrogenase formation HypD protein
YP_003166010.1	TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rfr:Rfer_4100 hydrogenase expression/formation protein HypE
YP_003166011.1	PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: rme:Rmet_1541 formyl transferase-like protein
YP_003166012.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 two component, sigma54 specific, transcriptional regulator, Fis family
YP_003166013.1	KEGG: azo:azo3807 ferredoxin hydrogenase, small subunit
YP_003166014.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: azo:azo3808 probable ferredoxin hydrogenase, large subunit
YP_003166017.1	PFAM: Spermine synthase; KEGG: afw:Anae109_1032 spermine synthase
YP_003166018.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dar:Daro_0054 ammonium transporter
YP_003166019.1	PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_0053 nitrogen regulatory protein P-II
YP_003166020.1	PFAM: conserved hypothetical protein; KEGG: dar:Daro_1084 conserved hypothetical protein 2001
YP_003166021.1	PFAM: protein of unknown function DUF526; KEGG: dar:Daro_0051 protein of unknown function DUF526
YP_003166022.1	KEGG: dar:Daro_0050 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003166023.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0049 drug resistance transporter Bcr/CflA subfamily
YP_003166024.1	PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_1524 major facilitator family transporter (permease)
YP_003166025.1	KEGG: eba:ebA3176 hypothetical protein
YP_003166026.1	TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: dar:Daro_0026 S-adenosylmethionine decarboxylase related
YP_003166027.1	catalyzes the formation of L-tryptophan from indole and L-serine
YP_003166028.1	PFAM: Sporulation domain protein; KEGG: dar:Daro_3710 hypothetical protein
YP_003166029.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_003166030.1	PFAM: protein of unknown function DUF1342; KEGG: dar:Daro_3708 hypothetical protein
YP_003166031.1	PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo0073 putative MFS permease
YP_003166032.1	PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce1378 acetyltransferases
YP_003166033.1	PFAM: lipopolysaccharide kinase; KEGG: pst:PSPTO_4998 lipopolysaccharide biosynthesis protein, putative
YP_003166034.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppf:Pput_0942 methyltransferase type 11
YP_003166035.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_003166036.1	TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: eba:ebA843 GTPase ObgE
YP_003166037.1	PFAM: ribosomal protein L27; KEGG: eba:ebC2 50S ribosomal protein L27
YP_003166038.1	PFAM: ribosomal protein L21; KEGG: azo:azo3167 50S ribosomal protein L21
YP_003166039.1	PFAM: Polyprenyl synthetase; KEGG: dar:Daro_0658 polyprenyl synthetase
YP_003166040.1	KEGG: pna:Pnap_3381 hypothetical protein
YP_003166041.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0661 signal transduction histidine kinase
YP_003166042.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0662 helix-turn-helix, fis-type
YP_003166043.1	PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: azo:azo3350 N-acetyl-anhydromuranmyl-L-alanine amidase
YP_003166044.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dar:Daro_0664 hypothetical protein
YP_003166045.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_003166046.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_003166047.1	PFAM: Patatin; KEGG: dar:Daro_0853 patatin
YP_003166048.1	PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: dar:Daro_0667 Murein-dd-endopeptidase. Serine peptidase. MEROPS family S11
YP_003166049.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_3693 thiosulphate-binding protein
YP_003166050.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_3692 sulphate transport system permease protein 2:sulfate ABC transporter, permease protein CysT
YP_003166051.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_3691 sulphate transport system permease protein 2:sulfate ABC transporter, permease protein CysW
YP_003166052.1	KEGG: eba:ebA6208 ATP-binding protein of thiosulfate ABC transporter; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase
YP_003166053.1	KEGG: nmu:Nmul_A1955 hypothetical protein
YP_003166054.1	KEGG: nmu:Nmul_A1956 hypothetical protein
YP_003166055.1	KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_003166056.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_003166057.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dar:Daro_3687 peptide chain release factor 1
YP_003166058.1	TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: dar:Daro_3684 modification methylase HemK
YP_003166059.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: eba:ebA1175 predicted glutaredoxin-related protein
YP_003166060.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bra:BRADO3199 putative carboxymuconolactone decarboxylase
YP_003166061.1	KEGG: dar:Daro_4094 hypothetical protein
YP_003166062.1	PFAM: cyclic nucleotide-binding; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo0988 putative serine/threonine protein kinase
YP_003166063.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_003166064.1	PFAM: cytochrome c class I; KEGG: dar:Daro_1587 cytochrome c, class I
YP_003166065.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_003166066.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: dar:Daro_3673 uroporphyrinogen-III synthase
YP_003166068.1	PFAM: HemY domain protein; KEGG: dar:Daro_3671 HemY, N-terminal
YP_003166069.1	PFAM: coproporphyrinogen III oxidase; KEGG: dar:Daro_3669 coproporphyrinogen III oxidase
YP_003166070.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_003166071.1	KEGG: dar:Daro_3667 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region
YP_003166072.1	PFAM: helix-turn-helix Fis-type; KEGG: dar:Daro_3666 helix-turn-helix, fis-type
YP_003166073.1	TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: dar:Daro_3665 dihydrouridine synthase TIM-barrel protein nifR3
YP_003166074.1	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: dar:Daro_0277 cell division topological specificity factor MinE
YP_003166075.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: eba:ebA6838 septum site-determining protein MinD
YP_003166076.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: tbd:Tbd_2302 septum site-determining protein MinC
YP_003166077.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: dar:Daro_3663 2-octaprenyl-6-methoxyphenol hydroxylase
YP_003166078.1	PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dar:Daro_3662 Aminopeptidase P. Metallo peptidase. MEROPS family M24B
YP_003166079.1	PFAM: Nucleotidyl transferase; KEGG: dar:Daro_3661 nucleotidyl transferase
YP_003166080.1	PFAM: aminoglycoside phosphotransferase; KEGG: eba:ebA1142 predicted phosphotransferase related to Ser/Thr protein kinase
YP_003166081.1	PFAM: Organic solvent tolerance protein; KEGG: dar:Daro_3659 organic solvent tolerance protein
YP_003166082.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dar:Daro_3658 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_003166083.1	KEGG: dar:Daro_3657 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_003166084.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dar:Daro_3656 dimethyladenosine transferase
YP_003166085.1	KEGG: ajs:Ajs_3417 hypothetical protein
YP_003166086.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_3649 cyclic nucleotide-binding:bacterial regulatory protein, Crp
YP_003166087.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dar:Daro_3648 exodeoxyribonuclease III
YP_003166088.1	KEGG: ret:RHE_PB00004 hypothetical protein
YP_003166089.1	PFAM: glutaredoxin; KEGG: dar:Daro_3647 hypothetical protein
YP_003166090.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: dar:Daro_3646 Oligopeptidase A. Metallo peptidase. MEROPS family M03A
YP_003166091.1	KEGG: dar:Daro_3645 integral membrane protein
YP_003166092.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_003166093.1	KEGG: dar:Daro_3639 hypothetical protein
YP_003166094.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_003166095.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003166096.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: lch:Lcho_0221 glyceraldehyde-3-phosphate dehydrogenase, type I
YP_003166097.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dar:Daro_3591 transketolase
YP_003166098.1	catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation
YP_003166099.1	PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ
YP_003166100.1	PFAM: von Willebrand factor type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO
YP_003166101.1	TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: tbd:Tbd_1798 hypothetical protein
YP_003166102.1	TIGRFAM: polysaccharide export protein EpsE; PFAM: polysaccharide export protein; KEGG: azo:azo2242 putative polysaccharide export protein
YP_003166103.1	TIGRFAM: chain length determinant protein EpsF; PFAM: lipopolysaccharide biosynthesis protein; KEGG: nmu:Nmul_A0243 lipopolysaccharide biosynthesis
YP_003166104.1	TIGRFAM: capsular exopolysaccharide family; chain length determinant protein tyrosine kinase EpsG; KEGG: pol:Bpro_1879 protein-tyrosine kinase
YP_003166105.1	KEGG: cph:Cpha266_1141 hypothetical protein
YP_003166106.1	KEGG: cch:Cag_1066 hypothetical protein
YP_003166107.1	PFAM: transposase IS66; KEGG: mgm:Mmc1_3392 transposase IS66
YP_003166108.1	TIGRFAM: eight transmembrane protein EpsH; exosortase 2; KEGG: nmu:Nmul_A0246 hypothetical protein
YP_003166109.1	TIGRFAM: EpsI family protein; KEGG: nmu:Nmul_A0247 hypothetical protein
YP_003166110.1	KEGG: gme:Gmet_2500 hypothetical protein
YP_003166111.1	TIGRFAM: eight transmembrane protein EpsH; exosortase 2; KEGG: nmu:Nmul_A0246 hypothetical protein
YP_003166112.1	TIGRFAM: EpsI family protein; KEGG: nmu:Nmul_A0247 hypothetical protein
YP_003166113.1	PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2336 glycosyl transferase, family 2
YP_003166114.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bch:Bcen2424_0237 DegT/DnrJ/EryC1/StrS aminotransferase
YP_003166115.1	KEGG: shw:Sputw3181_1469 transferase hexapeptide repeat containing protein
YP_003166116.1	PFAM: polysaccharide biosynthesis protein; KEGG: mba:Mbar_A0025 hypothetical protein
YP_003166117.1	KEGG: rec:RHECIAT_CH0003464 putative exopolysaccharide production protein
YP_003166118.1	PFAM: glycosyl transferase family 2; KEGG: tbd:Tbd_0313 rhamnosyl transferase related protein
YP_003166119.1	PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4359 glycosyl transferase family 2
YP_003166120.1	PFAM: Methyltransferase type 12; KEGG: pol:Bpro_2204 methyltransferase type 12
YP_003166121.1	PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase
YP_003166122.1	KEGG: gvi:gll4265 unknown protein
YP_003166123.1	PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0253 glycosyl transferase, group 1
YP_003166124.1	PFAM: Heparinase II/III family protein; KEGG: aba:Acid345_3793 heparinase II/III-like
YP_003166125.1	KEGG: pfl:PFL_1024 GDP-mannose 6-dehydrogenase AlgD; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_003166126.1	PFAM: glycosyl transferase group 1; KEGG: nar:Saro_3221 glycosyl transferase, group 1
YP_003166127.1	PFAM: protein of unknown function DUF1555; KEGG: mar:MAE_04300 hypothetical protein
YP_003166128.1	KEGG: dar:Daro_1502 protein of unknown function DUF1555
YP_003166129.1	KEGG: dar:Daro_1502 protein of unknown function DUF1555
YP_003166130.1	KEGG: azo:azo2245 hypothetical secreted protein
YP_003166131.1	TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: azo:azo2246 putative glycosyltransferase
YP_003166132.1	KEGG: pol:Bpro_1880 VanZ like protein
YP_003166133.1	PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_3220 lytic transglycosylase, catalytic
YP_003166134.1	KEGG: gvi:gll2920 unknown protein
YP_003166135.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003166136.1	PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase
YP_003166138.1	KEGG: lch:Lcho_1593 protein of unknown function DUF1555
YP_003166139.1	KEGG: rec:RHECIAT_CH0000808 putative rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; PFAM: Hemolysin-type calcium-binding region; Peptidase M10 serralysin; SMART: peptidase metallopeptidase
YP_003166140.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003166141.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003166142.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003166143.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003166144.1	KEGG: sme:SMb20079 putative hemolysin-adenlyate cyclase protein
YP_003166145.1	PFAM: protein of unknown function UPF0016; KEGG: dar:Daro_0933 hypothetical protein
YP_003166146.1	KEGG: azo:azo2655 hypothetical membrane protein
YP_003166147.1	PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mac:MA2418 type I site-specific deoxyribonuclease protein R
YP_003166148.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein
YP_003166149.1	KEGG: hch:HCH_05028 restriction endonuclease S subunit
YP_003166150.1	PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: rfr:Rfer_1059 N-6 DNA methylase
YP_003166151.1	PFAM: Protein of unknown function DUF1778; KEGG: eba:ebB58 hypothetical protein
YP_003166152.1	PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA2001 GCN5-related N-acetyltransferase
YP_003166153.1	PFAM: protein of unknown function UPF0005; KEGG: dar:Daro_0852 hypothetical protein
YP_003166154.1	PFAM: polysaccharide deacetylase; KEGG: cvi:CV_0745 hypothetical protein
YP_003166155.1	PFAM: protein of unknown function DUF498; KEGG: dar:Daro_2388 protein of unknown function DUF598
YP_003166156.1	PFAM: aminotransferase class I and II; KEGG: bpt:Bpet2748 putative aminotransferase
YP_003166157.1	PFAM: aminotransferase class I and II; KEGG: eba:ebA4951 aminotransferase AlaT
YP_003166158.1	PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: azo:azo2081 homoserine dehydrogenase
YP_003166159.1	PFAM: peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20
YP_003166160.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA3792 predicted acyl-CoA transferase
YP_003166161.1	PFAM: Auxin Efflux Carrier; KEGG: dar:Daro_0262 auxin efflux carrier
YP_003166162.1	PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: xau:Xaut_0996 protein phosphatase 2C-like protein
YP_003166163.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_4053 FAD dependent oxidoreductase
YP_003166164.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_0923 oxidoreductase, short chain dehydrogenase/reductase family
YP_003166165.1	PFAM: aldo/keto reductase; KEGG: spe:Spro_0648 aldo/keto reductase
YP_003166166.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pna:Pnap_1061 transglutaminase, N-terminal domain protein
YP_003166167.1	KEGG: dar:Daro_4079 cytochrome c family protein
YP_003166168.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pfo:PflO1_4881 cobalamin synthesis protein/P47K
YP_003166169.1	PFAM: protein of unknown function DUF466; KEGG: rfr:Rfer_2450 protein of unknown function DUF466
YP_003166170.1	PFAM: carbon starvation protein CstA; KEGG: rfr:Rfer_2451 carbon starvation protein CstA
YP_003166171.1	PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_2208 TatD-related deoxyribonuclease
YP_003166172.1	KEGG: rme:Rmet_1470 hypothetical protein
YP_003166173.1	KEGG: rme:Rmet_1471 hypothetical protein
YP_003166174.1	PFAM: KAP P-loop domain protein; KEGG: rme:Rmet_1472 kap P-loop
YP_003166175.1	KEGG: tbd:Tbd_1491 adenine specific DNA-methyltransferase
YP_003166176.1	PFAM: transposase IS66; KEGG: mgm:Mmc1_1134 transposase IS66
YP_003166179.1	unknown function; when overproduced it confers drug-resistance
YP_003166180.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; SMART: GAF domain protein; KEGG: rfr:Rfer_2453 histidine kinase internal protein
YP_003166181.1	KEGG: rfr:Rfer_2477 hypothetical protein
YP_003166182.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003166183.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003166184.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003166185.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003166186.1	KEGG: rfr:Rfer_2477 hypothetical protein
YP_003166187.1	KEGG: dar:Daro_0778 possible flagellar biosynthetic protein
YP_003166188.1	PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: dar:Daro_0777 YcgR
YP_003166189.1	in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane
YP_003166190.1	PFAM: fumarate reductase subunit C; KEGG: cvi:CV_3367 fumarate reductase, subunit C
YP_003166191.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003166192.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_003166193.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_2223 methyltransferase type 11
YP_003166194.1	PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_3841 TatD-related deoxyribonuclease
YP_003166195.1	PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_3842 D-amino acid dehydrogenase small subunit
YP_003166196.1	KEGG: dar:Daro_3843 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_003166197.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_003166198.1	Essential for recycling GMP and indirectly, cGMP
YP_003166199.1	KEGG: dar:Daro_1533 hypothetical protein
YP_003166200.1	PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dar:Daro_3848 hypothetical protein
YP_003166201.1	PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_3849 serine/threonine protein kinase
YP_003166202.1	SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3850 protein phosphatase 2C-like
YP_003166203.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_003166204.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_003166205.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003166206.1	KEGG: dar:Daro_3110 ankyrin
YP_003166207.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dar:Daro_3111 TonB, C-terminal
YP_003166208.1	KEGG: azo:azo3968 tRNA (guanine-N(7))-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase
YP_003166209.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_003166210.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: tbd:Tbd_2127 thiamine-biosynthesis protein ThiS
YP_003166211.1	PFAM: Lipocalin family protein; KEGG: pat:Patl_0580 lipocalin-like
YP_003166212.1	PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rfr:Rfer_1050 hypothetical protein
YP_003166213.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_003166214.1	KEGG: dar:Daro_0559 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_003166215.1	KEGG: dar:Daro_0550 putative partition-related protein
YP_003166216.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family
YP_003166217.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dar:Daro_0548 zinc-containing alcohol dehydrogenase superfamily
YP_003166218.1	PFAM: UvrD/REP helicase; KEGG: dar:Daro_0546 ATP-dependent DNA helicase UvrD
YP_003166219.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: swd:Swoo_2378 cytochrome-c peroxidase
YP_003166220.1	PFAM: acyltransferase 3; KEGG: sus:Acid_1188 acyltransferase 3
YP_003166221.1	TIGRFAM: methyltransferase FkbM family; KEGG: syp:SYNPCC7002_A1141 methyltransferase, FkbM family protein
YP_003166222.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bph:Bphy_4697 transcriptional regulator, LysR family
YP_003166223.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_003166224.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: bph:Bphy_5952 phosphoribulokinase
YP_003166225.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: azo:azo2836 transketolase
YP_003166226.1	PFAM: Cache type 2 domain protein; KEGG: rpe:RPE_3971 cache, type 2 domain protein
YP_003166227.1	PFAM: GPR1/FUN34/yaaH family protein; KEGG: rpe:RPE_3970 GPR1/FUN34/YaaH family protein
YP_003166228.1	PFAM: chemotaxis sensory transducer; KEGG: azo:azo3937 putative aerotaxis receptor
YP_003166229.1	KEGG: lpn:lpg2069 transposase Tn5
YP_003166230.1	TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: dar:Daro_1363 PAS
YP_003166231.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: dar:Daro_0574 methionyl-tRNA synthetase
YP_003166232.1	KEGG: dar:Daro_0573 hypothetical protein
YP_003166233.1	KEGG: eba:ebA6243 hypothetical protein
YP_003166234.1	PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A2668 long-chain acyl-CoA synthetases (AMP-forming)
YP_003166235.1	KEGG: psa:PST_0909 carbamoylphosphate synthase large subunit (split gene in MJ)
YP_003166236.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_0908 short chain dehydrogenase
YP_003166237.1	KEGG: psa:PST_0907 hypothetical protein
YP_003166238.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_I0673 DNA-binding response regulator
YP_003166239.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2816 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_003166240.1	KEGG: tbd:Tbd_0194 hypothetical protein
YP_003166241.1	KEGG: azc:AZC_1915 hypothetical protein
YP_003166244.1	catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_003166245.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_003166246.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_003166247.1	PFAM: Sporulation domain protein; KEGG: dar:Daro_3865 sporulation related
YP_003166248.1	PFAM: DSBA oxidoreductase; KEGG: dar:Daro_3864 twin-arginine translocation pathway signal
YP_003166249.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_3863 short chain dehydrogenase
YP_003166250.1	PFAM: domain of unknown function DUF1745; KEGG: dar:Daro_4141 hypothetical protein
YP_003166251.1	KEGG: rxy:Rxyl_2663 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003166252.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo2451 short-chain dehydrogenase family protein
YP_003166253.1	PFAM: periplasmic binding protein; KEGG: eba:ebA3624 predicted ABC-type Fe3+-hydroxamate transport system, periplasmic component
YP_003166254.1	PFAM: peptidase U32; KEGG: dar:Daro_0109 peptidase U32
YP_003166255.1	PFAM: peptidase U32; KEGG: dar:Daro_0108 peptidase U32
YP_003166256.1	KEGG: dar:Daro_0107 hypothetical protein
YP_003166257.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpt:Bpet2951 hypothetical protein
YP_003166258.1	KEGG: cyb:CYB_2397 hypothetical protein
YP_003166259.1	KEGG: sat:SYN_02034 hypothetical cytosolic protein
YP_003166260.1	PFAM: protein of unknown function DUF190; KEGG: bac:BamMC406_0817 protein of unknown function DUF190
YP_003166261.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: ppw:PputW619_2862 CrcB protein
YP_003166262.1	TIGRFAM: hydrogenase maturation protease; KEGG: dar:Daro_0983 HoxW protein
YP_003166263.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dar:Daro_0982 nickel-dependent hydrogenase, large subunit
YP_003166264.1	PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: azo:azo1414 probable hydrogen dehydrogenase, delta subunit
YP_003166265.1	PFAM: ferredoxin; KEGG: azo:azo1413 probable hydrogen dehydrogenase, gamma subunit
YP_003166266.1	PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mag:amb3393 NAD-reducing hydrogenase diaphorase moiety largesubunit
YP_003166267.1	PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: dar:Daro_0975 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
YP_003166268.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; KEGG: dar:Daro_0964 ribonucleotide reductase large subunit
YP_003166269.1	KEGG: sme:SMb20628 hypothetical protein
YP_003166270.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppd:Ppro_3843 addiction module toxin, RelE/StbE family
YP_003166273.1	KEGG: bba:Bd0514 hypothetical protein
YP_003166275.1	PFAM: peptidase M28; KEGG: scl:sce7994 hypothetical protein
YP_003166276.1	KEGG: ago:AGOS_ADR187W ADR187Wp
YP_003166278.1	PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif)
YP_003166279.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bpd:BURPS668_0735 putative ATP-dependent RNA helicase RhlE
YP_003166280.1	KEGG: rpt:Rpal_3627 tetratricopeptide TPR_2 repeat protein
YP_003166281.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mgm:Mmc1_0912 protein of unknown function DUF21
YP_003166282.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mgm:Mmc1_0911 protein of unknown function DUF21
YP_003166283.1	TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dar:Daro_0854 6-pyruvoyl tetrahydropterin synthase and hypothetical protein
YP_003166284.1	PFAM: Allophanate hydrolase subunit 1; KEGG: azo:azo0045 hypothetical protein
YP_003166285.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: azo:azo0044 conserved hypothetical UreA amidolyase-related protein
YP_003166286.1	PFAM: LamB/YcsF family protein; KEGG: azo:azo0043 hypothetical protein
YP_003166287.1	PFAM: AFG1-family ATPase; KEGG: dar:Daro_2856 AFG1-like ATPase
YP_003166288.1	PFAM: NolW domain protein; KEGG: dar:Daro_2854 hypothetical protein
YP_003166289.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cau:Caur_1952 diguanylate cyclase
YP_003166290.1	KEGG: dar:Daro_2851 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase
YP_003166292.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hha:Hhal_1357 metal dependent phosphohydrolase
YP_003166293.1	TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; KEGG: eba:ebA6842 5-methylaminomethyl-2-thiouridine methyltransferase
YP_003166294.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_003166295.1	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tbd:Tbd_0921 bacterial peptide chain release factor 2 (bRF-2)
YP_003166296.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_1825 transcriptional regulator, AraC family
YP_003166298.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spl:Spea_3056 diguanylate cyclase/phosphodiesterase
YP_003166299.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_4164 hypothetical protein
YP_003166300.1	PFAM: protein of unknown function DUF299; KEGG: ccr:CC_0001 hypothetical protein
YP_003166301.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_0933 3-hydroxyacyl-CoA dehydrogenase type II
YP_003166302.1	PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region
YP_003166303.1	PFAM: protein of unknown function DUF1555; KEGG: sus:Acid_3967 hypothetical protein
YP_003166304.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dar:Daro_2838 RecJ exonuclease
YP_003166305.1	KEGG: dar:Daro_2837 hypothetical protein
YP_003166306.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dar:Daro_2836 lipoprotein releasing system, transmembrane protein, LolC/E family
YP_003166307.1	KEGG: eba:ebA5820 probable ATP-binding component, ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003166308.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_2834 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer
YP_003166309.1	KEGG: dar:Daro_2832 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2
YP_003166310.1	PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase
YP_003166312.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: dar:Daro_2832 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2
YP_003166313.1	TIGRFAM: addiction module antidote protein; KEGG: xfn:XfasM23_2207 putative transcriptional regulator
YP_003166314.1	TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: xfn:XfasM23_2208 addiction module killer protein
YP_003166315.1	PFAM: protein of unknown function DUF1568; KEGG: mfa:Mfla_0477 protein of unknown function DUF1568
YP_003166318.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase
YP_003166319.1	KEGG: bvi:Bcep1808_7338 hypothetical protein
YP_003166320.1	KEGG: mpt:Mpe_A0696 phage integrase
YP_003166321.1	PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1513 probable hydrolase
YP_003166322.1	PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_2830 alpha/beta hydrolase fold
YP_003166323.1	PFAM: protein of unknown function DUF980; KEGG: dar:Daro_2829 protein of unknown function DUF980
YP_003166324.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2828 protein of unknown function DUF6, transmembrane
YP_003166325.1	KEGG: dar:Daro_2827 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_003166326.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_003166327.1	PFAM: Ppx/GppA phosphatase; KEGG: dar:Daro_1205 Ppx/GppA phosphatase
YP_003166328.1	PFAM: protein of unknown function DUF140; KEGG: dar:Daro_1206 protein of unknown function DUF140
YP_003166329.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1207 ABC transporter related
YP_003166330.1	PFAM: Mammalian cell entry related domain protein; KEGG: dar:Daro_1208 mammalian cell entry related
YP_003166331.1	KEGG: dar:Daro_1209 putative lipoprotein
YP_003166332.1	activates fatty acids by binding to coenzyme A
YP_003166333.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_003166334.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mrd:Mrad2831_1243 diguanylate cyclase
YP_003166335.1	KEGG: rfr:Rfer_2035 hypothetical protein
YP_003166336.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pmy:Pmen_4338 methyltransferase type 11
YP_003166337.1	PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: dar:Daro_3347 TrkA-N
YP_003166338.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase
YP_003166339.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: hha:Hhal_1722 magnesium transporter
YP_003166340.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mxa:MXAN_6506 sulfate permease
YP_003166341.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tbd:Tbd_2407 RNA methyltransferase CspR
YP_003166342.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_003166343.1	KEGG: dar:Daro_1965 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_003166344.1	PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2
YP_003166345.1	PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1228 OmpA/MotB
YP_003166346.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_003166347.1	PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1228 OmpA/MotB
YP_003166348.1	KEGG: dar:Daro_1227 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12
YP_003166349.1	TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bur:Bcep18194_A4150 2-phosphoglycolate phosphatase
YP_003166350.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: dar:Daro_0828 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_003166351.1	PFAM: protein of unknown function UPF0066; KEGG: cvi:CV_0659 hypothetical protein
YP_003166352.1	KEGG: gme:Gmet_0233 hypothetical protein
YP_003166353.1	KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_003166354.1	PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: eba:ebA6315 conserved hypothetical protein, predicted peptidase
YP_003166355.1	PFAM: extracellular solute-binding protein family 3; KEGG: bmu:Bmul_2714 extracellular solute-binding protein family 3
YP_003166356.1	KEGG: pfl:PFL_2099 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase
YP_003166357.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cti:RALTA_A0429 glutamate/aspartate transport protein; ABC superfamily, membrane component
YP_003166358.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A0459 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_003166359.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_0117 ABC superfamily (glutamate/aspartate transporter), ATP-binding protein
YP_003166360.1	PFAM: NAD-glutamate dehydrogenase; KEGG: cvi:CV_3084 glutamate dehydrogenase
YP_003166361.1	KEGG: hha:Hhal_0142 hypothetical protein
YP_003166362.1	PFAM: heat shock protein DnaJ domain protein; KEGG: hha:Hhal_0143 heat shock protein DnaJ domain protein
YP_003166363.1	PFAM: GrpE protein; KEGG: hha:Hhal_0144 GrpE protein
YP_003166364.1	PFAM: Heat shock protein 70; KEGG: hha:Hhal_0145 heat shock protein 70
YP_003166365.1	KEGG: hha:Hhal_0146 hypothetical protein
YP_003166366.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: glo:Glov_1041 methyl-accepting chemotaxis sensory transducer
YP_003166367.1	KEGG: rxy:Rxyl_1080 redoxin
YP_003166368.1	PFAM: protein of unknown function UPF0153; KEGG: bra:BRADO3784 conserved hypothetical protein; putative signal peptide
YP_003166369.1	PFAM: branched-chain amino acid transport; KEGG: rec:RHECIAT_PC0000122 hypothetical protein
YP_003166370.1	PFAM: AzlC family protein; KEGG: sme:SMc00559 hypothetical protein
YP_003166371.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3786 integral membrane sensor hybrid histidine kinase
YP_003166372.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dar:Daro_0172 Maf-like protein
YP_003166373.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_003166374.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: eba:ebA3971 conserved hypothetical protein, predicted iojap-related protein family
YP_003166375.1	KEGG: dar:Daro_0169 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_003166376.1	KEGG: dar:Daro_0168 putative transmembrane protein
YP_003166377.1	KEGG: dar:Daro_0167 putative transmembrane protein
YP_003166378.1	KEGG: azo:azo3604 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase
YP_003166379.1	KEGG: dar:Daro_0165 hypothetical protein
YP_003166380.1	KEGG: dar:Daro_0163 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2
YP_003166381.1	PFAM: protein of unknown function DUF820; KEGG: tex:Teth514_0292 protein of unknown function DUF820
YP_003166382.1	KEGG: azo:azo2983 putative transposase
YP_003166384.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:ebA65 hypothetical protein
YP_003166385.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003166386.1	KEGG: reu:Reut_A1129 hypothetical protein
YP_003166387.1	KEGG: afw:Anae109_3727 hypothetical protein
YP_003166388.1	KEGG: pol:Bpro_5556 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like
YP_003166389.1	PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: reu:Reut_B4875 peptidoglycan glycosyltransferase
YP_003166391.1	KEGG: rso:RS02998 putative lipoprotein transmembrane
YP_003166393.1	TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; peptidase C14 caspase catalytic subunit p20; KEGG: dar:Daro_2106 filamentous haemagglutinin, N-terminal
YP_003166394.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: tbd:Tbd_0056 predicted signal transduction protein containing EAL and modified HD-GYP domains
YP_003166396.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: azo:azo0688 probable propionyl-CoA carboxylase alpha chain
YP_003166397.1	PFAM: carboxyl transferase; KEGG: azo:azo0687 probable propionyl-coa carboxylase beta subunit
YP_003166398.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_003166399.1	MDM; functions in conversion of succinate to propionate
YP_003166400.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dar:Daro_4007 transcriptional regulator, GntR family
YP_003166401.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dar:Daro_4012 enoyl-CoA hydratase/isomerase
YP_003166402.1	PFAM: protein of unknown function DUF81; KEGG: eba:ebA1817 hypothetical protein
YP_003166403.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase
YP_003166404.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ppg:PputGB1_1380 dTDP-glucose 4,6-dehydratase
YP_003166405.1	KEGG: she:Shewmr4_1328 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein
YP_003166406.1	TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3928 lipopolysaccharide heptosyltransferase I
YP_003166407.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_003166408.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_3926 type I secretion outer membrane protein, TolC
YP_003166409.1	PFAM: putative RNA methylase; protein-L-isoaspartate(D-aspartate) O-methyltransferase; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_3924 protein-L-isoaspartate(D-aspartate) O-methyltransferase:O-methyltransferase, family 3
YP_003166410.1	PFAM: ribosomal protein S20; KEGG: mfa:Mfla_2211 30S ribosomal protein S20
YP_003166411.1	PFAM: porin Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin)
YP_003166412.1	PFAM: porin Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin)
YP_003166413.1	PFAM: Indole-3-glycerol phosphate synthase; KEGG: eba:ebA4201 indole-3-glycerol phosphate synthase
YP_003166414.1	KEGG: lch:Lcho_3877 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like
YP_003166415.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dar:Daro_3477 anthranilate synthase component II
YP_003166416.1	KEGG: mms:mma_1918 hypothetical protein
YP_003166417.1	PFAM: Phosphoglycerate mutase; KEGG: reh:H16_A0399 phosphoglycerate mutase family protein
YP_003166418.1	KEGG: dar:Daro_1131 hypothetical protein
YP_003166419.1	KEGG: psb:Psyr_2639 hypothetical protein
YP_003166420.1	PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF
YP_003166421.1	KEGG: eba:ebA2774 putative aminopeptidase
YP_003166422.1	KEGG: rfr:Rfer_3005 hypothetical protein
YP_003166423.1	KEGG: rfr:Rfer_3006 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003166424.1	KEGG: eba:ebA6372 hypothetical protein
YP_003166425.1	KEGG: psa:PST_0577 hypothetical protein
YP_003166426.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003166427.1	KEGG: nmu:Nmul_A1168 hypothetical protein
YP_003166428.1	KEGG: pol:Bpro_4278 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11
YP_003166429.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_003166430.1	TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_2229 phosphoglycolate phosphatase
YP_003166431.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: azo:azo3327 putative ribulose-phosphate 3-epimerase
YP_003166432.1	PFAM: ApaG domain protein; KEGG: tbd:Tbd_2231 ApaG
YP_003166433.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_3485 phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase
YP_003166434.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_003166435.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_003166436.1	PFAM: CBS domain containing protein; KEGG: eba:ebA948 hypothetical protein
YP_003166437.1	PFAM: gamma-glutamyltranspeptidase; KEGG: syn:slr1269 gamma-glutamyltranspeptidase precursor
YP_003166438.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: dar:Daro_1148 chemotaxis-specific methylesterase
YP_003166439.1	KEGG: azo:azo3674 probable serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_003166440.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: azo:azo3673 two-component system histidine kinase
YP_003166441.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo3672 DNA-binding response regulator
YP_003166442.1	KEGG: pna:Pnap_3560 zinc finger, RanBP2-type
YP_003166443.1	KEGG: pna:Pnap_3559 TRAP-type uncharacterized transport system protein, periplasmic component
YP_003166444.1	PFAM: aminotransferase class I and II; KEGG: glo:Glov_2977 aminotransferase class I and II
YP_003166445.1	KEGG: dar:Daro_3166 hypothetical protein
YP_003166447.1	TIGRFAM: urea ABC transporter, urea binding protein; KEGG: dar:Daro_1443 twin-arginine translocation pathway signal
YP_003166448.1	TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: dar:Daro_1437 inner-membrane translocator
YP_003166449.1	TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: dar:Daro_1436 inner-membrane translocator
YP_003166450.1	TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: dar:Daro_1435 ABC transporter related
YP_003166451.1	KEGG: dar:Daro_1434 ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003166452.1	KEGG: cts:Ctha_1392 hypothetical protein
YP_003166453.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cts:Ctha_1311 TPR repeat-containing protein
YP_003166455.1	KEGG: ana:alr9018 hypothetical protein
YP_003166456.1	KEGG: bmn:BMA10247_A0105 hypothetical protein
YP_003166457.1	PFAM: Urease accessory protein UreD; KEGG: dar:Daro_1430 urease accessory protein UreD
YP_003166458.1	KEGG: npu:Npun_F0823 urease, gamma subunit UreA; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region
YP_003166459.1	KEGG: dar:Daro_1428 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit
YP_003166460.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_003166461.1	PFAM: UreE urease accessory domain protein; KEGG: azo:azo3503 probable urease accessory protein UreE
YP_003166462.1	PFAM: Urease accessory protein UreF; KEGG: azo:azo3502 probable urease accessory protein UreF
YP_003166463.1	TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: azo:azo3501 urease accessory protein UreG
YP_003166464.1	KEGG: ddi:DDB_0233354 CCHC-type Zn finger-containing protein
YP_003166465.1	PFAM: phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative
YP_003166466.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: eba:ebA871 threonyl-tRNA synthetase
YP_003166467.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: eba:ebA870 translation initiation factor IF-3
YP_003166468.1	PFAM: ribosomal protein L35; KEGG: azo:azo1081 50S ribosomal protein L35
YP_003166469.1	TIGRFAM: ribosomal protein L20; KEGG: dar:Daro_2674 50S ribosomal protein L20
YP_003166470.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_003166471.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_003166472.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_003166473.1	PFAM: regulatory protein MerR; KEGG: dar:Daro_2670 regulatory protein, MerR
YP_003166474.1	KEGG: npu:Npun_F5467 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003166475.1	PFAM: protein of unknown function DUF485; KEGG: lch:Lcho_2500 protein of unknown function DUF485
YP_003166476.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dar:Daro_0428 Na+/solute symporter
YP_003166477.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_003166478.1	KEGG: dar:Daro_0859 hypothetical protein
YP_003166479.1	PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: dar:Daro_0860 nucleoside:H+ symporter:major facilitator superfamily MFS_1
YP_003166480.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_003166481.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_003166482.1	KEGG: dar:Daro_0866 hypothetical protein
YP_003166483.1	PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein
YP_003166484.1	KEGG: azo:azo1044 hypothetical protein
YP_003166485.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_003166486.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dar:Daro_0869 phosphoribosylanthranilate isomerase
YP_003166487.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_003166488.1	KEGG: dar:Daro_0871 tryptophan synthase, alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain
YP_003166489.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: dar:Daro_0872 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
YP_003166490.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_0873 folylpolyglutamate synthetase
YP_003166491.1	PFAM: Sporulation domain protein; KEGG: dar:Daro_0874 sporulation related
YP_003166492.1	PFAM: Colicin V production protein; KEGG: dar:Daro_0875 colicin V production protein
YP_003166493.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_003166494.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_003166495.1	KEGG: eba:ebD128 hypothetical protein
YP_003166496.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_003166497.1	KEGG: tbd:Tbd_1922 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein
YP_003166498.1	KEGG: hau:Haur_4444 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain
YP_003166499.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: eba:ebA5998 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (FirA protein)
YP_003166500.1	PFAM: biotin/lipoyl attachment domain-containing protein; dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: plu:plu1883 hypothetical protein
YP_003166501.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cvi:CV_1553 probable enoyl-CoA hydratase
YP_003166502.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dar:Daro_3531 apolipoprotein N-acyltransferase
YP_003166503.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: dar:Daro_3530 CBS:transporter-associated region
YP_003166504.1	PFAM: protein of unknown function UPF0054; KEGG: dar:Daro_3529 hypothetical protein
YP_003166505.1	PFAM: PhoH family protein; KEGG: eba:ebA1337 PhoH-like protein
YP_003166506.1	KEGG: dar:Daro_3527 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_003166507.1	KEGG: ajs:Ajs_3624 hypothetical protein
YP_003166508.1	KEGG: amr:AM1_0973 hypothetical protein
YP_003166509.1	KEGG: rme:Rmet_4200 hypothetical protein
YP_003166510.1	PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1189 17 kDa surface antigen
YP_003166511.1	KEGG: met:M446_1571 hypothetical protein
YP_003166512.1	KEGG: bph:Bphy_6348 hypothetical protein
YP_003166514.1	KEGG: bph:Bphy_4531 hypothetical protein
YP_003166515.1	KEGG: bph:Bphy_4532 periplasmic protein-like protein
YP_003166516.1	KEGG: bph:Bphy_4533 hypothetical protein
YP_003166517.1	KEGG: xau:Xaut_2318 carbohydrate-binding family V/XII
YP_003166518.1	PFAM: OmpA/MotB domain protein; KEGG: mca:MCA1819 OmpA domain protein
YP_003166519.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: stm:STM1739 cardiolipin synthetase
YP_003166520.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: chu:CHU_1407 conserved hypothetical protein; possible MarC family, integral membrane protein
YP_003166521.1	KEGG: rme:Rmet_1904 hypothetical protein
YP_003166522.1	PFAM: sulfatase; KEGG: dsh:Dshi_0936 sulfatase
YP_003166523.1	KEGG: aba:Acid345_4739 hypothetical protein
YP_003166525.1	KEGG: xau:Xaut_3124 ion transport 2 domain protein
YP_003166526.1	KEGG: aag:AaeL_AAEL012894 sugar transporter
YP_003166527.1	KEGG: cts:Ctha_2607 abortive infection protein
YP_003166528.1	KEGG: pnu:Pnuc_0885 hypothetical protein
YP_003166529.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: vha:VIBHAR_02301 cytochrome c oxidase, subunit CcoQ
YP_003166530.1	PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_2758 demethylmenaquinone methyltransferase
YP_003166531.1	PFAM: regulatory protein AsnC/Lrp family; regulatory protein ArsR; KEGG: bac:BamMC406_4349 transcriptional regulator, AsnC family
YP_003166532.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ote:Oter_4033 lysine exporter protein (LysE/YggA)
YP_003166533.1	PFAM: Lytic transglycosylase catalytic; KEGG: reu:Reut_A2357 lytic transglycosylase, catalytic
YP_003166535.1	PFAM: protein of unknown function DUF344; KEGG: dps:DP0981 hypothetical protein
YP_003166536.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mba:Mbar_A2518 sulfate transporter
YP_003166537.1	PFAM: membrane protein of uknown function UCP014873; KEGG: lip:LI0059 hypothetical protein
YP_003166538.1	KEGG: pne:Pnec_0591 hypothetical protein
YP_003166539.1	KEGG: dvl:Dvul_0140 lipoprotein, putative
YP_003166540.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2
YP_003166541.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ade:Adeh_0492 hemerythrin-like, metal-binding protein
YP_003166542.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003166543.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003166544.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003166545.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003166546.1	KEGG: pmt:PMT0221 NHL repeat
YP_003166547.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_003166548.1	KEGG: cak:Caul_3677 prevent-host-death family protein
YP_003166549.1	PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family
YP_003166551.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_003166552.1	TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: met:M446_2161 malate dehydrogenase, NAD-dependent
YP_003166553.1	PFAM: carbonic anhydrase; KEGG: asa:ASA_3957 carbonic anhydrase
YP_003166554.1	PFAM: Phosphoglycerate mutase; KEGG: rpd:RPD_0651 phosphoglycerate mutase
YP_003166555.1	PFAM: RES domain protein; KEGG: neu:NE2107 hypothetical protein
YP_003166556.1	PFAM: conserved hypothetical protein; KEGG: neu:NE2106 hypothetical protein
YP_003166557.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sun:SUN_1992 outer membrane efflux lipoprotein
YP_003166558.1	PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_2518 secretion protein HlyD
YP_003166559.1	KEGG: rpd:RPD_2517 hypothetical protein
YP_003166560.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: vha:VIBHAR_02301 cytochrome c oxidase, subunit CcoQ
YP_003166561.1	PFAM: sulfatase; KEGG: rba:RB9498 arylsulfatase
YP_003166562.1	KEGG: nha:Nham_2981 NapD-like protein
YP_003166563.1	PFAM: sulfatase; KEGG: sus:Acid_4083 sulfatase
YP_003166564.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sme:SMa1686 two-component response regulator
YP_003166565.1	KEGG: bxe:Bxe_A2886 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003166566.1	PFAM: response regulator receiver; KEGG: rle:pRL110224 putative two-component response regulator
YP_003166567.1	KEGG: pnu:Pnuc_1057 putative lipoprotein
YP_003166568.1	PFAM: Patatin; surface antigen variable number repeat protein; KEGG: dar:Daro_0465 patatin
YP_003166569.1	PFAM: conserved hypothetical protein; KEGG: hch:HCH_04647 hypothetical protein
YP_003166570.1	PFAM: protein of unknown function UPF0061; KEGG: mfa:Mfla_1788 hypothetical protein
YP_003166571.1	KEGG: ajs:Ajs_1055 hypothetical protein
YP_003166572.1	TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: mxa:MXAN_0097 HipA-like protein
YP_003166573.1	PFAM: protein of unknown function DUF262; KEGG: mxa:MXAN_0098 hypothetical protein
YP_003166574.1	PFAM: RES domain protein; KEGG: mms:mma_1339 hypothetical protein
YP_003166575.1	KEGG: mms:mma_1338 hypothetical protein
YP_003166576.1	KEGG: eba:ebD50 hypothetical protein
YP_003166577.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Cytochrome b/b6 domain; Oxidoreductase FAD-binding domain protein; KEGG: tbd:Tbd_2563 CDP-6-deoxy-delta-3,4-glucoseen reductase
YP_003166578.1	KEGG: mag:amb2226 hypothetical protein
YP_003166579.1	PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein
YP_003166580.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; Cytochrome b/b6 domain; KEGG: mes:Meso_4302 cytochrome b/b6-like
YP_003166581.1	KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin
YP_003166582.1	KEGG: azo:azo3355 Tfp structural protein
YP_003166583.1	KEGG: bps:BPSL0183 penicillin-binding protein
YP_003166584.1	KEGG: azo:azo3353 hypothetical protein
YP_003166585.1	KEGG: azo:azo3352 hypothetical secreted protein
YP_003166586.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo3351 putative ABC transporter ATP-binding protein
YP_003166587.1	KEGG: sco:SCO3725 hypothetical protein
YP_003166588.1	KEGG: afw:Anae109_1852 hypothetical protein
YP_003166589.1	KEGG: gsu:GSU2508 TPR domain protein
YP_003166591.1	KEGG: plt:Plut_1926 hypothetical protein
YP_003166592.1	PFAM: SpoVT/AbrB domain protein; KEGG: gdi:GDI0308 hypothetical protein
YP_003166593.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sus:Acid_7800 NAD-dependent epimerase/dehydratase
YP_003166594.1	PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90165 putative transmembrane HlyD type I secretion protein
YP_003166595.1	PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000253 putative toxin secretion ABC transporter protein
YP_003166596.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mag:amb2315 outer membrane protein
YP_003166597.1	KEGG: reu:Reut_A0774 hypothetical protein
YP_003166598.1	KEGG: rxy:Rxyl_3095 glycosyl transferase, family 2
YP_003166600.1	KEGG: gka:GK1917 hypothetical protein
YP_003166601.1	PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase
YP_003166602.1	KEGG: chy:CHY_1250 ISChy3, orf1
YP_003166603.1	KEGG: dol:Dole_1287 capsular polysaccharide biosynthesis protein-like protein
YP_003166605.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase
YP_003166606.1	PFAM: WxcM domain protein; KEGG: sit:TM1040_3422 WxcM-like
YP_003166607.1	PFAM: glycosyl transferase family 2; KEGG: tel:tlr2317 probable glycosyl transferase
YP_003166608.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: reu:Reut_A0772 TPR repeat
YP_003166609.1	KEGG: lch:Lcho_1754 large exoprotein involved in heme utilization or adhesion
YP_003166610.1	KEGG: azo:azo2709 hypothetical protein
YP_003166611.1	KEGG: esa:ESA_01285 hypothetical protein
YP_003166612.1	PFAM: flagellar protein FliS; KEGG: dar:Daro_0781 flagellar protein FliS
YP_003166613.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: azo:azo2706 flagellar hook-associated protein
YP_003166614.1	PFAM: flagellar protein FlaG protein; KEGG: dar:Daro_0783 flagellar protein FlaG protein
YP_003166615.1	PFAM: flagellin domain protein; KEGG: tbd:Tbd_1590 flagellin FliC
YP_003166616.1	KEGG: eba:ebA782 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_003166617.1	KEGG: dar:Daro_2523 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11
YP_003166618.1	PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: dar:Daro_2522 peptidoglycan-binding LysM:peptidase M23B
YP_003166619.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_003166620.1	TIGRFAM: lytic murein transglycosylase B; KEGG: dar:Daro_2520 lytic murein transglycosylase B
YP_003166621.1	PFAM: transglutaminase domain protein; KEGG: dar:Daro_2519 transglutaminase-like
YP_003166622.1	PFAM: protein of unknown function DUF58; KEGG: dar:Daro_2518 protein of unknown function DUF58
YP_003166623.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_2517 ATPase associated with various cellular activities, AAA_3:ATPase associated with various cellular activities, AAA_5
YP_003166624.1	PFAM: histone deacetylase superfamily; KEGG: dar:Daro_2516 histone deacetylase superfamily
YP_003166625.1	KEGG: azo:azo1096 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase
YP_003166626.1	PFAM: NlpBDapX family lipoprotein; KEGG: dar:Daro_0847 NlpBDapX lipoprotein
YP_003166627.1	PFAM: beta-lactamase domain protein; KEGG: nmu:Nmul_A1139 beta-lactamase-like
YP_003166628.1	KEGG: dre:100006554 hypothetical LOC100006554
YP_003166631.1	PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: pca:Pcar_0272 permease protein, NupC family of nucleoside transporters
YP_003166632.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_003166633.1	PFAM: cobalbumin biosynthesis protein; KEGG: dar:Daro_0147 adenosylcobinamide kinase
YP_003166634.1	PFAM: UspA domain protein; KEGG: dar:Daro_1761 UspA
YP_003166635.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_003166636.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: bvi:Bcep1808_2532 cobalamin biosynthesis protein
YP_003166637.1	TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: dar:Daro_0139 aminotransferase
YP_003166638.1	PFAM: periplasmic binding protein; KEGG: dar:Daro_0138 periplasmic binding protein
YP_003166639.1	PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet0641 putative bactoprenol glycosyltransferase
YP_003166640.1	PFAM: glycosyl transferase family 39; KEGG: dar:Daro_2758 glycosyl transferase, family 39
YP_003166641.1	PFAM: GtrA family protein; KEGG: bav:BAV2926 bactoprenol-linked glucose translocase
YP_003166642.1	KEGG: bpt:Bpet0643 hypothetical protein
YP_003166643.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mma:MM_0621 hypothetical protein
YP_003166644.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_0045 putative haloacid dehalogenase-like hydrolase
YP_003166645.1	PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1073 alpha/beta hydrolase fold
YP_003166646.1	KEGG: hha:Hhal_0623 hypothetical protein
YP_003166648.1	KEGG: gsu:GSU0887 hypothetical protein
YP_003166649.1	KEGG: ace:Acel_0025 kelch repeat-containing protein
YP_003166650.1	KEGG: ace:Acel_0233 hypothetical protein
YP_003166651.1	PFAM: carbonic anhydrase; KEGG: pmy:Pmen_3753 carbonate dehydratase
YP_003166652.1	PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_B2348 glutathione S-transferase-like
YP_003166653.1	KEGG: lch:Lcho_2463 hypothetical protein
YP_003166654.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: lch:Lcho_2464 AAA ATPase central domain protein
YP_003166655.1	PFAM: PspA/IM30 family protein; KEGG: pna:Pnap_3139 phage shock protein A, PspA
YP_003166656.1	KEGG: pna:Pnap_3138 hypothetical protein
YP_003166657.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3345 ABC transporter related
YP_003166658.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_12960 probable permease of ABC taurine transporter
YP_003166659.1	PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05413 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components
YP_003166660.1	KEGG: pna:Pnap_3135 putative methyl-accepting chemotaxis sensory transducer
YP_003166661.1	PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; KEGG: mgm:Mmc1_0890 WD-40 repeat protein
YP_003166662.1	KEGG: dar:Daro_2942 hypothetical protein
YP_003166663.1	PFAM: MCP methyltransferase CheR-type; KEGG: dar:Daro_1146 MCP methyltransferase, CheR-type
YP_003166664.1	TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: azo:azo3283 conserved hypothetical polysaccharide export protein
YP_003166665.1	TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis
YP_003166666.1	KEGG: rfr:Rfer_0660 protein-tyrosine kinase
YP_003166667.1	TIGRFAM: PEP-CTERM system associated protein; KEGG: dar:Daro_2400 hypothetical protein
YP_003166668.1	TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: rfr:Rfer_0662 ATPase
YP_003166669.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase
YP_003166670.1	TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: rfr:Rfer_0664 polysaccharide deacetylase
YP_003166671.1	TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: dar:Daro_2404 hypothetical protein
YP_003166672.1	TIGRFAM: eight transmembrane protein EpsH; EpsI family protein; exosortase 1; KEGG: rfr:Rfer_0666 hypothetical protein
YP_003166673.1	PFAM: formyl transferase domain protein; polysaccharide deacetylase; KEGG: rba:RB7144 probable predicted xylanase/chitin deacetylase
YP_003166674.1	TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: neu:NE1796 glycosyl transferase group 1
YP_003166675.1	KEGG: dar:Daro_2408 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); exosortase 1 system-associated amidotransferase 1; PFAM: glutamine amidotransferase class-II; asparagine synthase
YP_003166676.1	PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0670 glycosyl transferase, group 1
YP_003166677.1	KEGG: rfr:Rfer_0671 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase
YP_003166678.1	TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0672 glycosyl transferase, group 1
YP_003166679.1	KEGG: mjl:Mjls_3937 glycosyl transferase, family 39
YP_003166680.1	KEGG: acr:Acry_2416 hypothetical protein
YP_003166681.1	PFAM: glycosyl transferase family 2; KEGG: pfl:PFL_5488 glycosyl transferase, group 2 family protein
YP_003166682.1	KEGG: mba:Mbar_A2511 transposase
YP_003166683.1	KEGG: rfr:Rfer_0673 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_003166684.1	PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_0674 hypothetical protein
YP_003166685.1	PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0675 glycosyl transferase, group 1
YP_003166686.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: swi:Swit_2836 methyltransferase type 11
YP_003166687.1	KEGG: rfr:Rfer_0676 putative CapK protein
YP_003166688.1	TIGRFAM: wzy family polymerase, exosortase system type 1 associated; PFAM: O-antigen polymerase; KEGG: nmu:Nmul_A0300 O-antigen polymerase
YP_003166689.1	PFAM: transposase IS4 family protein; KEGG: bvi:Bcep1808_6178 transposase, IS4 family protein
YP_003166690.1	PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A0301 polysaccharide deacetylase
YP_003166691.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003166692.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003166693.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003166694.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003166695.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003166696.1	PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase
YP_003166697.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003166698.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003166699.1	KEGG: mms:mma_3461 hypothetical protein
YP_003166700.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003166701.1	SMART: ParB domain protein nuclease; KEGG: sus:Acid_0648 ParB domain protein nuclease
YP_003166702.1	KEGG: sus:Acid_0647 hypothetical protein
YP_003166703.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sus:Acid_0646 IstB domain protein ATP-binding protein
YP_003166704.1	KEGG: tvo:TVN1411 predicted inactivated transposase
YP_003166705.1	KEGG: sru:SRU_2295 phosphate ABC transporter, permease protein PstA
YP_003166706.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902
YP_003166707.1	PFAM: transposase IS4 family protein; KEGG: azo:azo2983 putative transposase
YP_003166708.1	KEGG: gur:Gura_3178 hypothetical protein
YP_003166709.1	PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein
YP_003166710.1	KEGG: psa:PST_0577 hypothetical protein
YP_003166711.1	PFAM: transposase IS3/IS911 family protein; KEGG: eba:ebB236 probable transposase (fragment)
YP_003166712.1	PFAM: Integrase catalytic region; KEGG: eba:ebA6779 transposase
YP_003166713.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003166714.1	KEGG: psa:PST_0577 hypothetical protein
YP_003166715.1	KEGG: tbd:Tbd_0304 hypothetical protein containg TPR repeat
YP_003166716.1	PFAM: FAD linked oxidase domain protein; KEGG: noc:Noc_1951 FAD linked oxidase-like
YP_003166717.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1950 short-chain dehydrogenase/reductase SDR
YP_003166718.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: noc:Noc_1949 HAD-superfamily hydrolase subfamily IB, PSPase-like
YP_003166719.1	PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase
YP_003166720.1	PFAM: conserved hypothetical protein; KEGG: noc:Noc_1947 conserved hypothetical protein 374
YP_003166721.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: sde:Sde_1361 response regulator receiver modulated diguanylate cyclase/phosphodiesterase
YP_003166722.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_2947 extracellular ligand-binding receptor
YP_003166723.1	KEGG: har:HEAR1210 hypothetical protein; putative signal peptide; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein
YP_003166724.1	PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter
YP_003166725.1	KEGG: cvi:CV_2941 N-glycosyltransferase PgaC
YP_003166727.1	KEGG: gur:Gura_0959 hypothetical protein
YP_003166728.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: lch:Lcho_1109 protein of unknown function DUF6 transmembrane
YP_003166729.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: lch:Lcho_1108 methylated-DNA--protein-cysteine methyltransferase
YP_003166730.1	PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: lch:Lcho_1107 transcriptional regulator, AraC family
YP_003166732.1	PFAM: Heavy metal transport/detoxification protein; KEGG: tfu:Tfu_0951 putative metal-binding protein
YP_003166733.1	PFAM: Lytic transglycosylase catalytic; KEGG: aha:AHA_0954 lytic transglycosylase, catalytic
YP_003166734.1	PFAM: extracellular solute-binding protein family 3; KEGG: ttj:TTHA1171 amino acid ABC transporter, periplasmic amino acid-binding protein
YP_003166735.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_003166736.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dge:Dgeo_1064 ABC transporter related
YP_003166737.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dps:DP0671 hypothetical protein
YP_003166738.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_2552 type I secretion membrane fusion protein, HlyD family
YP_003166739.1	PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: ppd:Ppro_2370 Ig family protein
YP_003166740.1	KEGG: vei:Veis_2578 hypothetical protein
YP_003166741.1	KEGG: dar:Daro_0850 hypothetical protein
YP_003166742.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_003166743.1	PFAM: ATP-cone domain protein; KEGG: dar:Daro_0604 hypothetical protein
YP_003166744.1	KEGG: dar:Daro_0605 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein
YP_003166745.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: azo:azo2804 adenylyltransferase, putative
YP_003166746.1	KEGG: dar:Daro_0607 hypothetical protein
YP_003166747.1	KEGG: dar:Daro_0608 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_003166748.1	PFAM: Peptidase M23; KEGG: dar:Daro_0609 peptidase M23B
YP_003166749.1	PFAM: regulatory protein ArsR; KEGG: dar:Daro_0610 transcriptional regulator, ArsR family
YP_003166750.1	PFAM: Rhodanese domain protein; KEGG: dar:Daro_0611 rhodanese-like
YP_003166751.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: dar:Daro_0612 glutaredoxin, GrxC
YP_003166752.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_003166753.1	PFAM: protein of unknown function DUF1058; KEGG: dar:Daro_0614 protein of unknown function DUF1058
YP_003166754.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_003166756.1	amylomaltase; acts to release glucose from maltodextrins
YP_003166757.1	KEGG: ppd:Ppro_1433 twin-arginine translocation pathway signal
YP_003166758.1	PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: mag:amb2556 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
YP_003166759.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: reu:Reut_A1203 acetate kinase
YP_003166760.1	KEGG: bid:Bind_0201 enoyl-(acyl carrier protein) reductase
YP_003166761.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_003166762.1	KEGG: reh:H16_A2156 hypothetical protein
YP_003166763.1	PFAM: protein of unknown function DUF1622; KEGG: mxa:MXAN_6597 hypothetical protein
YP_003166764.1	KEGG: reu:Reut_A1207 hypothetical protein
YP_003166765.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: reu:Reut_A1208 sulphate anion transporter
YP_003166766.1	PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 protein of unknown function DUF344
YP_003166767.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02946 type I secretion outer membrane protein
YP_003166768.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_1457 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
YP_003166769.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sat:SYN_02948 acriflavin resistance periplasmic protein
YP_003166770.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: azo:azo1613 probable ribonuclease E
YP_003166771.1	KEGG: dar:Daro_2006 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_003166772.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: azo:azo1615 probable hydrolase
YP_003166773.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: tbd:Tbd_1561 hypothetical protein
YP_003166774.1	PFAM: peptidase S49; KEGG: dar:Daro_2009 peptidase S49
YP_003166775.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bph:Bphy_0823 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase
YP_003166776.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dar:Daro_2011 Maf-like protein
YP_003166777.1	PFAM: protein of unknown function DUF177; KEGG: dar:Daro_2012 protein of unknown function DUF177
YP_003166778.1	TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: eba:ebC5 50S ribosomal protein L32
YP_003166779.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_003166780.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_003166781.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: dar:Daro_2016 [acyl-carrier-protein] S-malonyltransferase
YP_003166782.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA5457 3-ketoacyl-(acyl-carrier-protein) reductase
YP_003166783.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: azo:azo1626 AcpP protein
YP_003166784.1	TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: nmu:Nmul_A1076 beta-ketoacyl synthase
YP_003166785.1	KEGG: neu:NE1513 hypothetical protein
YP_003166786.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_003166787.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_003166788.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: dar:Daro_2023 positive regulator of sigma(E), RseC/MucC
YP_003166789.1	KEGG: dar:Daro_2024 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein
YP_003166790.1	PFAM: glutaredoxin 2; KEGG: dar:Daro_2025 glutaredoxin 2
YP_003166791.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_003166792.1	KEGG: dar:Daro_2027 Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein
YP_003166793.1	KEGG: lch:Lcho_0599 hypothetical protein
YP_003166794.1	PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: dar:Daro_2029 ribonuclease III, bacterial
YP_003166795.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_003166796.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_003166797.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_003166798.1	KEGG: dar:Daro_2033 holo-acyl carrier protein synthase:phosphopantethiene-protein transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase
YP_003166799.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_003166800.1	TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: azo:azo0086 elongation factor P
YP_003166801.1	KEGG: azo:azo0085 hypothetical protein
YP_003166802.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_003166803.1	KEGG: dar:Daro_2039 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_003166804.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_1573 transcriptional regulator, LysR family
YP_003166806.1	KEGG: gsu:GSU0757 lipoprotein, putative
YP_003166807.1	PFAM: protein of unknown function DUF1311; KEGG: son:SO_0112 hypothetical protein
YP_003166808.1	KEGG: swi:Swit_0419 hypothetical protein
YP_003166810.1	PFAM: peptidase S10 serine carboxypeptidase; KEGG: cyb:CYB_1865 peptidase, S10 (carboxypeptidase Y) family
YP_003166811.1	PFAM: Abortive infection protein; KEGG: cph:Cpha266_0281 abortive infection protein
YP_003166813.1	KEGG: fjo:Fjoh_4868 aminopeptidase N-like protein
YP_003166814.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: pna:Pnap_4887 transcriptional regulator, AbrB family
YP_003166815.1	KEGG: lch:Lcho_4258 PilT protein domain protein
YP_003166816.1	KEGG: pin:Ping_2519 hypothetical protein
YP_003166817.1	KEGG: pna:Pnap_4278 methyl-accepting chemotaxis protein
YP_003166818.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pna:Pnap_4277 DEAD/DEAH box helicase domain protein
YP_003166821.1	PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3376 heat shock protein HSP20
YP_003166822.1	PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3375 heat shock protein HSP20
YP_003166823.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tbd:Tbd_1431 putative heat shock protein, DnaJ family
YP_003166824.1	KEGG: tbd:Tbd_1430 transcriptional regulatory protein, MerR family
YP_003166825.1	PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_3419 peptidase, M48 family
YP_003166826.1	PFAM: Propeptide PepSY amd peptidase M4; KEGG: rha:RHA1_ro04784 hypothetical protein
YP_003166827.1	PFAM: cytochrome B561; KEGG: shn:Shewana3_0245 cytochrome b561
YP_003166828.1	PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1513 probable hydrolase
YP_003166829.1	PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A2687 putative long-chain-fatty-acid CoA ligase
YP_003166830.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_4457 short-chain dehydrogenase/reductase SDR
YP_003166831.1	KEGG: sus:Acid_6837 hypothetical protein
YP_003166833.1	KEGG: rxy:Rxyl_0317 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain
YP_003166835.1	PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: dar:Daro_3338 YcgR
YP_003166837.1	TIGRFAM: selenide, water dikinase; pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: AIR synthase related protein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_1613 selenide, water dikinase
YP_003166838.1	KEGG: scl:sce0865 hypothetical protein
YP_003166839.1	KEGG: dar:Daro_2817 hypothetical protein
YP_003166840.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbr:BB4010 putative two-component sensor
YP_003166841.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mfa:Mfla_0654 two component transcriptional regulator, winged helix family
YP_003166842.1	KEGG: bxe:Bxe_A3388 hypothetical protein
YP_003166843.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: csc:Csac_2437 phosphoenolpyruvate-protein phosphotransferase
YP_003166844.1	TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_2303 diacylglycerol O-acyltransferase
YP_003166845.1	KEGG: rno:686441 hypothetical protein LOC686441
YP_003166847.1	KEGG: cau:Caur_1173 hypothetical protein
YP_003166848.1	KEGG: bja:blr2889 hypothetical protein
YP_003166849.1	PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold
YP_003166850.1	PFAM: carbonic anhydrase; KEGG: dar:Daro_3922 carbonic anhydrase, eukaryotic
YP_003166851.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_003166852.1	PFAM: protein of unknown function DUF485; KEGG: dar:Daro_4011 protein of unknown function DUF485
YP_003166853.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dar:Daro_0248 cyclic nucleotide-binding
YP_003166854.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_0249 AMP-dependent synthetase and ligase
YP_003166855.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo3446 ABC transporter ATP-binding protein
YP_003166856.1	PFAM: inner-membrane translocator; KEGG: pna:Pnap_3609 inner-membrane translocator
YP_003166857.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3539 inner-membrane translocator
YP_003166858.1	KEGG: pol:Bpro_0600 hypothetical protein
YP_003166859.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lch:Lcho_3439 ABC transporter-related protein
YP_003166860.1	KEGG: dar:Daro_0256 hypothetical protein
YP_003166861.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: azo:azo3440 hypothetical protein
YP_003166862.1	KEGG: dar:Daro_0263 hypothetical protein
YP_003166863.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cti:RALTA_p0442 putative zinc-containing alcohol dehydrogenase
YP_003166864.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_4080 transcriptional regulator, LysR family
YP_003166865.1	PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: dar:Daro_4081 protein of unknown function DUF6, transmembrane
YP_003166866.1	KEGG: net:Neut_2246 hypothetical protein
YP_003166867.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: noc:Noc_1960 DegT/DnrJ/EryC1/StrS aminotransferase
YP_003166868.1	TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: eba:ebA4296 ornithine/diaminopimelate/arginine decarboxylase,family 2
YP_003166869.1	TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_2434 AMP-dependent synthetase and ligase
YP_003166870.1	PFAM: asparagine synthase; KEGG: azo:azo3247 probable asparagine synthase
YP_003166871.1	KEGG: net:Neut_0942 hypothetical protein
YP_003166872.1	KEGG: dar:Daro_3743 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003166873.1	PFAM: ATP-binding region ATPase domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_3744 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003166874.1	KEGG: azo:azo3178 hypothetical protein
YP_003166875.1	KEGG: dar:Daro_2390 hypothetical protein
YP_003166876.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2391 ABC transporter related
YP_003166877.1	KEGG: dar:Daro_2392 hypothetical protein
YP_003166878.1	TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0056 alcohol dehydrogenase GroES-like protein
YP_003166879.1	KEGG: nmu:Nmul_A0982 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase
YP_003166880.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1871 putative spermidine/putrescine transport system permease protein
YP_003166881.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0980 binding-protein-dependent transport systems inner membrane component
YP_003166882.1	PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0979 extracellular solute-binding protein, family 1
YP_003166883.1	PFAM: PilT protein domain protein; KEGG: net:Neut_0071 PilT protein domain protein
YP_003166885.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902
YP_003166886.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_0223 efflux transporter, RND family, MFP subunit
YP_003166887.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2407 ABC transporter-related protein
YP_003166888.1	PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214
YP_003166889.1	PFAM: protein of unknown function DUF214; KEGG: reh:H16_B2141 ABC-type transporter, permease component
YP_003166891.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1488 hypothetical protein
YP_003166892.1	KEGG: mpt:Mpe_A1489 putative ThiO:disulfide interchange protein
YP_003166894.1	PFAM: DNA polymerase beta domain protein region; KEGG: fal:FRAAL4454 putative nucleotidyltransferase
YP_003166895.1	PFAM: glutaredoxin; KEGG: mms:mma_3548 glutaredoxin family protein
YP_003166896.1	PFAM: Tail Collar domain protein; protein of unknown function DUF1555; KEGG: pen:PSEEN0745 phage tail collar
YP_003166897.1	KEGG: dar:Daro_0266 hypothetical protein
YP_003166898.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cti:RALTA_A0130 conserved hypothetical protein; YbaK/prolyl-tRNA synthetase associated region
YP_003166899.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_1346 acyl-CoA dehydrogenase domain protein
YP_003166900.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_B2583 putative CaiB/BaiF family protein
YP_003166901.1	TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: vei:Veis_2466 death-on-curing family protein
YP_003166902.1	TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: pna:Pnap_2222 putative addiction module antidote
YP_003166904.1	PFAM: protein of unknown function DUF81; KEGG: cja:CJA_2354 domain of unknown function domain protein
YP_003166906.1	KEGG: eba:ebA3984 carbamoyltransferase, NodU family
YP_003166907.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003166908.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003166909.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003166910.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003166911.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: azo:azo1234 probable transcriptional regulator
YP_003166912.1	KEGG: dar:Daro_0809 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_003166913.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mgm:Mmc1_1941 nitrogen fixation-related protein
YP_003166914.1	PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein
YP_003166916.1	PFAM: protein of unknown function RIO1; KEGG: dar:Daro_1866 protein of unknown function RIO1
YP_003166917.1	KEGG: sde:Sde_3819 hypothetical protein
YP_003166919.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_1079 two component transcriptional regulator, winged helix family
YP_003166920.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3558 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003166921.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_3557 response regulator receiver:transcriptional regulatory protein, C-terminal
YP_003166922.1	PFAM: K potassium transporter; KEGG: dar:Daro_3556 K+ potassium transporter
YP_003166923.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor
YP_003166924.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: dar:Daro_1081 magnesium and cobalt transport protein CorA
YP_003166925.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_003166926.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_003166927.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_003166928.1	TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit
YP_003166930.1	KEGG: cbe:Cbei_2587 collagen triple helix repeat
YP_003166931.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_A2352 lysine exporter protein (LysE/YggA)
YP_003166932.1	KEGG: sdn:Sden_2243 hypothetical protein
YP_003166933.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_3019 ABC transporter related
YP_003166934.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpe:RPE_2048 phosphonate ABC transporter, inner membrane subunit
YP_003166935.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: bbt:BBta_3379 putative phosphonate transport system binding protein HtxB precursor PhnD
YP_003166936.1	KEGG: ade:Adeh_0244 LigA
YP_003166937.1	PFAM: protein of unknown function DUF891; KEGG: rpt:Rpal_4351 protein of unknown function DUF891
YP_003166938.1	KEGG: mar:MAE_29420 transcriptional regulator
YP_003166940.1	KEGG: sus:Acid_1790 ABC-1 domain protein
YP_003166941.1	PFAM: regulatory protein TetR; KEGG: dar:Daro_2159 transcriptional regulator, TetR family
YP_003166942.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_2160 secretion protein HlyD
YP_003166943.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2161 hydrophobe/amphiphile efflux-1 HAE1
YP_003166944.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_2162 RND efflux system, outer membrane lipoprotein, NodT
YP_003166945.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain protein
YP_003166946.1	KEGG: ppd:Ppro_0406 hypothetical protein
YP_003166947.1	PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: ttj:TTHA0432 IMP dehydrogenase/GMP reductase
YP_003166948.1	PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein
YP_003166949.1	KEGG: glo:Glov_2583 hypothetical protein
YP_003166951.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003166952.1	KEGG: psa:PST_0577 hypothetical protein
YP_003166954.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ade:Adeh_4118 acyl-CoA dehydrogenase
YP_003166955.1	KEGG: bbt:BBta_p0081 hypothetical protein
YP_003166956.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003166957.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003166958.1	KEGG: bja:bll7553 hypothetical protein
YP_003166960.1	PFAM: Pirin domain protein; KEGG: ajs:Ajs_1985 pirin domain protein
YP_003166961.1	PFAM: YceI family protein; KEGG: dar:Daro_2796 YceI
YP_003166962.1	PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI
YP_003166963.1	PFAM: cytochrome B561; KEGG: dar:Daro_2794 cytochrome b561, bacterial
YP_003166964.1	PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: dar:Daro_2793 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_003166965.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2792 regulatory protein, LysR:LysR, substrate-binding
YP_003166966.1	PFAM: protein of unknown function DUF1223; KEGG: bmn:BMA10247_0484 hypothetical protein
YP_003166967.1	PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: amr:AM1_2563 hypothetical protein
YP_003166969.1	KEGG: bba:Bd2513 putative phosphodiesterase/alkaline phosphatase D
YP_003166970.1	KEGG: sbm:Shew185_4115 hypothetical protein
YP_003166971.1	PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: pol:Bpro_4842 beta-lactamase-like
YP_003166972.1	TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1307 sulfate transporter
YP_003166974.1	PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family
YP_003166975.1	KEGG: rpe:RPE_2640 hypothetical protein
YP_003166976.1	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_2641 ATPase AAA-2 domain protein
YP_003166977.1	KEGG: ppd:Ppro_0939 hypothetical protein
YP_003166979.1	KEGG: sus:Acid_6364 hypothetical protein
YP_003166980.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dar:Daro_0686 two component transcriptional regulator, LuxR family
YP_003166981.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; KEGG: dar:Daro_0685 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003166982.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cts:Ctha_0917 phosphate binding protein
YP_003166983.1	PFAM: PhoU family protein; KEGG: aba:Acid345_2971 phosphate uptake regulator, PhoU
YP_003166984.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cts:Ctha_0918 phosphate ABC transporter, inner membrane subunit PstC
YP_003166985.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cts:Ctha_0919 phosphate ABC transporter, inner membrane subunit PstA
YP_003166986.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_0920 ABC transporter-related protein
YP_003166987.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_0921 ABC transporter-related protein
YP_003166988.1	PFAM: Ion transport 2 domain protein; KEGG: shn:Shewana3_2914 ion transport 2 domain protein
YP_003166989.1	PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD
YP_003166990.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_2820 RND efflux system, outer membrane lipoprotein, NodT family
YP_003166991.1	PFAM: protein of unknown function UPF0118; KEGG: sfu:Sfum_0593 protein of unknown function UPF0118
YP_003166992.1	KEGG: kra:Krad_2698 major facilitator superfamily MFS_1
YP_003166994.1	KEGG: fra:Francci3_2176 hypothetical protein
YP_003166995.1	PFAM: conserved hypothetical protein; KEGG: slo:Shew_2727 hypothetical protein
YP_003166996.1	PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0222 probable sigma-54 interacting transcription regulator protein
YP_003166997.1	PFAM: band 7 protein; KEGG: bch:Bcen2424_3693 band 7 protein
YP_003166998.1	PFAM: protein of unknown function UPF0027; KEGG: rso:RSc0224 RtcB protein
YP_003166999.1	catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester
YP_003167000.1	PFAM: amino acid-binding ACT domain protein; KEGG: eba:ebA6107 glycine cleavage system regulatory protein
YP_003167001.1	KEGG: cyt:cce_3035 hypothetical protein
YP_003167003.1	KEGG: xcv:XCVd0102 hypothetical protein
YP_003167004.1	PFAM: PilT protein domain protein; KEGG: xac:XACb0059 virulence associated protein
YP_003167005.1	PFAM: transposase IS4 family protein; KEGG: amt:Amet_0246 hypothetical protein
YP_003167007.1	KEGG: psa:PST_0577 hypothetical protein
YP_003167008.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003167009.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003167010.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003167011.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003167012.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003167013.1	KEGG: amr:AM1_A0239 hypothetical protein
YP_003167014.1	PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_2746 hypothetical protein
YP_003167017.1	KEGG: bay:RBAM_011800 YjcA
YP_003167018.1	KEGG: sen:SACE_5533 hypothetical protein
YP_003167019.1	PFAM: electron transport protein SCO1/SenC; Redoxin domain protein; KEGG: mag:amb2224 uncharacterized protein SCO1/SenC/PrrC
YP_003167020.1	TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mag:amb2223 polyprenyltransferase
YP_003167021.1	PFAM: cytochrome c oxidase subunit I; KEGG: mag:amb2222 heme/copper-type cytochrome/quinol oxidase, subunit 1
YP_003167022.1	PFAM: cytochrome c oxidase subunit II; KEGG: mag:amb2221 heme/copper-type cytochrome/quinol oxidase, subunit 2
YP_003167023.1	KEGG: mag:amb2220 hypothetical protein
YP_003167024.1	PFAM: cytochrome oxidase assembly; KEGG: nmu:Nmul_A1204 cytochrome oxidase assembly
YP_003167025.1	PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly
YP_003167026.1	PFAM: protein of unknown function DUF461; KEGG: azo:azo2153 conserved hypothetical secreted protein
YP_003167027.1	KEGG: aeh:Mlg_0868 hypothetical protein
YP_003167028.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: azo:azo3293 SCO1/SenC family protein
YP_003167029.1	PFAM: Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron
YP_003167030.1	PFAM: protein of unknown function DUF1486; KEGG: abu:Abu_2016 hypothetical protein
YP_003167032.1	KEGG: sde:Sde_3437 esterase/lipase/thioesterase family active site
YP_003167033.1	PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase
YP_003167034.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003167035.1	PFAM: FRG domain protein; KEGG: bch:Bcen2424_6542 hypothetical protein
YP_003167036.1	KEGG: lch:Lcho_2331 hypothetical protein
YP_003167037.1	KEGG: syn:ssl2064 hypothetical protein
YP_003167038.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: lch:Lcho_3125 pyridoxamine 5'-phosphate oxidase-related FMN-binding
YP_003167039.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt3382 putative glyoxyalase/bleomycin resistance protein
YP_003167040.1	PFAM: integrase family protein; KEGG: sdn:Sden_1137 phage integrase
YP_003167041.1	PFAM: putative transposase; KEGG: sdn:Sden_1136 transposase
YP_003167042.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003167043.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003167044.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003167045.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003167048.1	KEGG: pth:PTH_2442 hypothetical protein
YP_003167049.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron
YP_003167050.1	KEGG: rsp:RSP_1963 hypothetical protein
YP_003167052.1	TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: mfa:Mfla_0410 integron integrase
YP_003167053.1	PFAM: surface antigen (D15); KEGG: dar:Daro_0462 surface antigen (D15)
YP_003167054.1	PFAM: protein of unknown function DUF490; KEGG: azo:azo3321 hypothetical protein
YP_003167055.1	PFAM: Radical SAM domain protein; KEGG: sil:SPO2159 radical SAM domain protein
YP_003167056.1	PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; SMART: Peptidase C14, caspase precursor p45, core; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20
YP_003167057.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: dar:Daro_0452 translation factor SUA5
YP_003167058.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_003167059.1	KEGG: dar:Daro_0449 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_003167060.1	PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: dar:Daro_0448 methenyltetrahydrofolate cyclohydrolase
YP_003167061.1	Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
YP_003167062.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dar:Daro_0446 4Fe-4S ferredoxin, iron-sulfur binding:thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_003167063.1	PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A0597 ABC glutamate/aspartate transporter, periplasmic ligand binding protein
YP_003167064.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sun:SUN_0974 oxoglutarate:malate translocator
YP_003167065.1	KEGG: sfu:Sfum_0587 hypothetical protein
YP_003167066.1	PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA
YP_003167067.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_003167068.1	KEGG: dar:Daro_0441 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_003167069.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bja:blr3722 dihydrolipoamide dehydrogenase
YP_003167070.1	PFAM: lipopolysaccharide kinase; KEGG: azo:azo3569 lipopolysaccharide core biosynthesis protein
YP_003167071.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: abo:ABO_1997 hypothetical protein
YP_003167072.1	PFAM: lipopolysaccharide kinase; KEGG: pap:PSPA7_5743 hypothetical protein
YP_003167073.1	KEGG: mlo:mll1962 hypothetical protein
YP_003167074.1	PFAM: Protein of unknown function DUF676 hydrolase domain protein; KEGG: spl:Spea_3739 PGAP1 family protein
YP_003167075.1	PFAM: TPR repeat-containing protein; SEC-C motif domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rru:Rru_A2859 hypothetical protein
YP_003167076.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_04875 methyl-accepting chemotaxis protein
YP_003167077.1	response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation
YP_003167078.1	part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation
YP_003167079.1	PFAM: Inner membrane CreD family protein; KEGG: dar:Daro_3179 hypothetical protein
YP_003167080.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: azo:azo0701 putative beta-hexosaminidase
YP_003167081.1	KEGG: dar:Daro_3162 putative lipoprotein
YP_003167082.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_1548 Hpt sensor hybrid histidine kinase
YP_003167083.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: glo:Glov_1547 extracellular solute-binding protein family 1
YP_003167085.1	PFAM: K potassium transporter; KEGG: eba:ebA3621 potassium uptake protein
YP_003167086.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_0677 phospholipid/glycerol acyltransferase
YP_003167087.1	PFAM: Acetyl xylan esterase; KEGG: mgm:Mmc1_2518 acetyl xylan esterase
YP_003167088.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003167089.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1885 major facilitator superfamily MFS_1
YP_003167090.1	TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: rfr:Rfer_3576 anaerobic C4-dicarboxylate membrane transporter family protein
YP_003167091.1	KEGG: amr:AM1_E0023 hypothetical protein
YP_003167092.1	PFAM: nitroreductase; KEGG: bbr:BB3252 hypothetical protein
YP_003167093.1	KEGG: tbd:Tbd_1778 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related
YP_003167094.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1779 glucose-1-phosphate thymidylyltransferase
YP_003167095.1	KEGG: sde:Sde_3920 helix-turn-helix, AraC type
YP_003167096.1	KEGG: ppp:PHYPADRAFT_103914 hypothetical protein Pfam: GRP SLH PROSITE: GLY_RICH SLH
YP_003167097.1	KEGG: dol:Dole_2934 hypothetical protein
YP_003167098.1	KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases
YP_003167099.1	PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3010 restriction modification system DNA specificity domain
YP_003167100.1	PFAM: N-6 DNA methylase; KEGG: bxe:Bxe_A0224 type I restriction-modification system, M subunit
YP_003167105.1	KEGG: tbd:Tbd_1967 hypothetical protein
YP_003167106.1	KEGG: rpb:RPB_3480 hypothetical protein
YP_003167107.1	PFAM: transposase IS4 family protein; KEGG: bvi:Bcep1808_6178 transposase, IS4 family protein
YP_003167108.1	KEGG: xau:Xaut_2247 hypothetical protein
YP_003167109.1	PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase
YP_003167110.1	PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lch:Lcho_2129 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003167111.1	PFAM: cyclic nucleotide-binding; KEGG: acr:Acry_2102 putative transcriptional regulator, Crp/Fnr family
YP_003167112.1	TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: bja:blr3598 hypothetical protein
YP_003167113.1	PFAM: putative phosphatase regulatory subunit; Endonuclease/exonuclease/phosphatase; KEGG: ssa:SSA_1808 hypothetical protein
YP_003167114.1	SMART: phospholipase D/Transphosphatidylase; KEGG: cbk:CLL_A2174 starch binding domain protein
YP_003167115.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2283 AMP-dependent synthetase and ligase
YP_003167116.1	KEGG: mta:Moth_1867 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta
YP_003167117.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: npu:Npun_AR200 alcohol dehydrogenase, zinc-binding domain protein
YP_003167118.1	KEGG: maq:Maqu_1010 hypothetical protein
YP_003167119.1	PFAM: coenzyme A transferase; KEGG: dar:Daro_0457 propionate CoA-transferase
YP_003167120.1	PFAM: Citrate transporter; KEGG: dar:Daro_0456 hypothetical protein
YP_003167121.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: maq:Maqu_0357 NAD pyrophosphatase/5'-nucleotidase NadN
YP_003167122.1	PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: mpt:Mpe_A0662 putative cell wall turnover protein
YP_003167123.1	KEGG: dar:Daro_2791 transglycosylase-associated protein
YP_003167124.1	KEGG: cvi:CV_0172 poly (3-hydroxybutyrate) depolymerase
YP_003167125.1	catalyzes the transfer of an amino moiety
YP_003167127.1	PFAM: protein of unknown function DUF1178; KEGG: dar:Daro_2040 protein of unknown function DUF1178
YP_003167128.1	TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: azo:azo3623 alcohol dehydrogenase classIII
YP_003167129.1	KEGG: azo:azo3624 probable esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase
YP_003167130.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; KEGG: azo:azo1444 probable response regulator
YP_003167131.1	PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein
YP_003167132.1	PFAM: glycoside hydrolase family 24; KEGG: bqu:BQ11590 phage related lysozyme
YP_003167133.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_2822 AMP-dependent synthetase and ligase
YP_003167134.1	TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: dar:Daro_2823 isochorismate synthase
YP_003167135.1	KEGG: dar:Daro_2345 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein
YP_003167136.1	PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase
YP_003167137.1	KEGG: chy:CHY_1250 ISChy3, orf1
YP_003167138.1	PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase
YP_003167139.1	KEGG: gka:GK1917 hypothetical protein
YP_003167142.1	PFAM: Hemolysin-type calcium-binding region; KEGG: xfn:XfasM23_1592 haemolysin-type calcium binding domain protein
YP_003167143.1	KEGG: xfm:Xfasm12_1648 hemolysin-type calcium binding protein
YP_003167146.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_003167147.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dar:Daro_1203 response regulator receiver modulated diguanylate cyclase
YP_003167148.1	TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: dar:Daro_1202 zinc-containing alcohol dehydrogenase superfamily
YP_003167149.1	PFAM: NLP/P60 protein; KEGG: dar:Daro_1201 NLP/P60
YP_003167150.1	PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_1200 extracellular solute-binding protein, family 1
YP_003167151.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component
YP_003167152.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1197 ABC transporter related
YP_003167153.1	KEGG: nmu:Nmul_A2709 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_003167154.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_003167155.1	PFAM: histidine kinase HAMP region domain protein; KEGG: mag:amb4076 methyl-accepting chemotaxis protein
YP_003167156.1	KEGG: reh:H16_A3291 predicted aminopeptidase
YP_003167157.1	KEGG: eba:ebA5275 probableacetyltransferase/hydrolase
YP_003167158.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_003167159.1	KEGG: dar:Daro_2338 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase
YP_003167160.1	KEGG: dar:Daro_2339 hypothetical protein
YP_003167161.1	PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein
YP_003167162.1	PFAM: cyclase/dehydrase; KEGG: dar:Daro_2341 streptomyces cyclase/dehydrase
YP_003167163.1	TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: nmu:Nmul_A1203 SsrA-binding protein
YP_003167164.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dar:Daro_1767 transcriptional regulator, GntR family
YP_003167165.1	PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region
YP_003167166.1	PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: psa:PST_3337 Fe-S oxidoreductase
YP_003167167.1	PFAM: protein of unknown function DUF162; KEGG: azo:azo1168 hypothetical protein
YP_003167168.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: azo:azo1167 conserved hypothetical iron-sulfur protein
YP_003167169.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_3146 cupin 2 protein
YP_003167170.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A0083 regulatory protein, LysR:LysR, substrate-binding
YP_003167173.1	KEGG: dar:Daro_3188 hypothetical protein
YP_003167174.1	KEGG: dar:Daro_1013 hypothetical protein
YP_003167175.1	KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46
YP_003167176.1	binds and unfolds substrates as part of the ClpXP protease
YP_003167177.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb0291 permease of the major facilitator superfamily
YP_003167180.1	PFAM: protein of unknown function DUF455; KEGG: bbr:BB3580 hypothetical protein
YP_003167181.1	KEGG: azo:azo0065 hypothetical protein
YP_003167182.1	PFAM: glutathione peroxidase; KEGG: azo:azo1277 conserved hypothetical glutathione peroxidase
YP_003167183.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_003167184.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dar:Daro_2464 glycine cleavage system H protein
YP_003167185.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dar:Daro_2463 aminomethyltransferase
YP_003167186.1	PFAM: protein of unknown function DUF1555; KEGG: azo:azo3175 hypothetical secreted protein
YP_003167187.1	PFAM: glycosyl transferase family 4; KEGG: neu:NE2281 glycosyl transferase, family 4
YP_003167188.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase
YP_003167189.1	PFAM: polysaccharide export protein; KEGG: net:Neut_2119 polysaccharide export protein
YP_003167190.1	KEGG: ade:Adeh_4274 tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein
YP_003167191.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dar:Daro_2969 RNA methyltransferase TrmH, group 3
YP_003167192.1	KEGG: pmt:PMT1202 carboxysome shell protein CsoS3
YP_003167193.1	KEGG: eba:ebA2628 ATP sulfurylase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein
YP_003167194.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_003167195.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_003167196.1	PFAM: conserved hypothetical protein; KEGG: hch:HCH_02537 hypothetical protein
YP_003167197.1	PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: azo:azo0432 putative sulfite reductase
YP_003167198.1	PFAM: protein of unknown function DUF81; KEGG: dar:Daro_2911 protein of unknown function DUF81
YP_003167199.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2910 transcriptional regulator CysB-like protein
YP_003167200.1	KEGG: nmu:Nmul_A0923 secretion protein HlyD
YP_003167202.1	KEGG: dar:Daro_2740 transferase hexapeptide repeat
YP_003167203.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1168 protein of unknown function DUF214
YP_003167204.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1167 ABC transporter related
YP_003167205.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_1166 secretion protein HlyD
YP_003167206.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_1165 outer membrane efflux protein
YP_003167207.1	KEGG: dar:Daro_2734 hypothetical protein
YP_003167208.1	PFAM: protein of unknown function DUF479; KEGG: azo:azo2378 hypothetical protein
YP_003167209.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase
YP_003167210.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nmu:Nmul_A1770 GTP-binding protein TypA
YP_003167211.1	PFAM: globin; KEGG: dar:Daro_1997 protozoan/cyanobacterial globin
YP_003167212.1	KEGG: tbd:Tbd_2617 hypothetical protein
YP_003167213.1	PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: glo:Glov_1809 putative signal-transduction protein with CBS domains
YP_003167214.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: abo:ABO_2653 putative monovalent cation/H+ antiporter subunit G
YP_003167215.1	PFAM: multiple resistance and pH regulation protein F; KEGG: mfa:Mfla_0578 putative monovalent cation/H+ antiporter subunit F
YP_003167216.1	PFAM: cation antiporter; KEGG: abo:ABO_2655 putative monovalent cation/H+ antiporter subunit E
YP_003167217.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tbd:Tbd_0495 putative monovalent cation/H+ antiporter subunit D
YP_003167218.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tbd:Tbd_0496 putative monovalent cation/H+ antiporter subunit C
YP_003167219.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_003167220.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dar:Daro_3566 phosphate uptake regulator, PhoU
YP_003167221.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0578 two component transcriptional regulator, winged helix family
YP_003167222.1	TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: tbd:Tbd_0217 PAS/PAC sensor signal transduction histidine kinase
YP_003167223.1	KEGG: bid:Bind_1962 hypothetical protein
YP_003167224.1	PFAM: proteinase inhibitor I11 ecotin; KEGG: har:HEAR0764 ecotin precursor
YP_003167225.1	PFAM: protein of unknown function DUF937; KEGG: mpt:Mpe_A0199 hypothetical protein
YP_003167226.1	KEGG: reu:Reut_B5186 hypothetical protein
YP_003167227.1	KEGG: gsu:GSU1096 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003167228.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A1087 phosphate transport system permease protein 2
YP_003167229.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A1086 phosphate ABC transporter, permease protein PstC
YP_003167230.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0897 phosphate binding protein
YP_003167231.1	KEGG: tbd:Tbd_0366 hypothetical protein
YP_003167232.1	TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0897 phosphate binding protein
YP_003167233.1	PFAM: periplasmic solute binding protein; KEGG: rru:Rru_A3704 periplasmic solute binding protein
YP_003167234.1	PFAM: ABC-3 protein; KEGG: rru:Rru_A3703 ABC-3 transporter component
YP_003167235.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_0562 ABC transporter ATP-binding protein
YP_003167237.1	PFAM: protein of unknown function DUF839; KEGG: mpt:Mpe_A3526 hypothetical protein
YP_003167238.1	KEGG: rfr:Rfer_1604 hypothetical protein
YP_003167239.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_3150 RNA polymerase sigma factor
YP_003167240.1	TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alanine dehydrogenase/PNT domain protein; KEGG: reu:Reut_B5878 L-alanine dehydrogenase
YP_003167241.1	PFAM: inositol monophosphatase; KEGG: eba:ebA6410 inositol monophosphatase (extragenic suppressor protein)
YP_003167242.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dar:Daro_1682 RNA methyltransferase TrmH, group 1
YP_003167243.1	TIGRFAM: serine O-acetyltransferase; KEGG: dar:Daro_1947 serine O-acetyltransferase
YP_003167244.1	TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: dar:Daro_1948 transcriptional regulator, BadM/Rrf2 family
YP_003167245.1	PFAM: aminotransferase class V; KEGG: dar:Daro_1949 aminotransferase, class V
YP_003167246.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: azo:azo2016 cysteine desulfurase
YP_003167247.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: azo:azo2015 scaffold protein
YP_003167248.1	TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_1952 HesB/YadR/YfhF:iron-sulphur cluster assembly protein IscA
YP_003167249.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_003167250.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_003167251.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: dar:Daro_1955 ferredoxin, 2Fe-2S type
YP_003167252.1	TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: dar:Daro_1956 protein of unknown function DUF528
YP_003167253.1	KEGG: dar:Daro_1957 hypothetical protein
YP_003167254.1	PFAM: NUDIX hydrolase; KEGG: pmy:Pmen_0608 NUDIX hydrolase
YP_003167255.1	PFAM: ribonuclease BN; KEGG: dar:Daro_0234 ribonuclease BN
YP_003167256.1	PFAM: Pyridoxal-dependent decarboxylase; KEGG: gvi:gll2670 probable amino acid decarboxylase
YP_003167257.1	PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_3315 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_003167258.1	PFAM: FAD linked oxidase domain protein; KEGG: har:HEAR0285 glycolate oxidase subunit GlcE
YP_003167259.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: eba:ebA4492 glycolate oxidase iron-sulfur subunit
YP_003167260.1	PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A1197 acyl-CoA synthetase
YP_003167261.1	KEGG: azo:azo2834 hypothetical protein
YP_003167262.1	SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3311 protein phosphatase 2C-like
YP_003167263.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dar:Daro_3310 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
YP_003167264.1	PFAM: protein of unknown function DUF1631; KEGG: dar:Daro_4133 protein of unknown function DUF1631
YP_003167265.1	KEGG: dar:Daro_3307 hypothetical protein
YP_003167266.1	KEGG: dar:Daro_2439 TPR repeat:tetratricopeptide TPR_3:tetratricopeptide TPR_4; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_003167267.1	KEGG: dar:Daro_2746 hypothetical protein
YP_003167268.1	PFAM: transposase IS4 family protein; KEGG: eba:p2A146 probable transposase
YP_003167269.1	KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain protein
YP_003167270.1	PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_3306 extracellular solute-binding protein, family 1
YP_003167271.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_003167272.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003167273.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bph:Bphy_1610 threonine aldolase
YP_003167274.1	PFAM: NUDIX hydrolase; KEGG: rme:Rmet_0810 NUDIX hydrolase
YP_003167275.1	KEGG: dar:Daro_1694 cobalt transport protein ATP-binding subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003167276.1	PFAM: cobalt transport protein; KEGG: dar:Daro_1695 cobalt transport protein
YP_003167277.1	periplasmic cobalt binding component of the cobalt transport system
YP_003167278.1	catalyzes the ATP-dependent transport of cobalt
YP_003167279.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rfr:Rfer_2969 extracellular solute-binding protein, family 3
YP_003167280.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2970 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_003167281.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2971 ABC transporter related
YP_003167282.1	PFAM: PGAP1 family protein; KEGG: dar:Daro_2143 conserved hypothetical hydrolase/lipase
YP_003167283.1	PFAM: protein of unknown function DUF1499; KEGG: lch:Lcho_1955 protein of unknown function DUF1499
YP_003167284.1	KEGG: dar:Daro_1104 hypothetical protein
YP_003167285.1	TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: hau:Haur_4713 1-phosphofructokinase
YP_003167286.1	KEGG: rxy:Rxyl_0316 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain
YP_003167287.1	PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: sfr:Sfri_1257 oxidoreductase domain protein
YP_003167288.1	KEGG: bja:bll3605 hypothetical protein
YP_003167289.1	KEGG: shw:Sputw3181_0402 hypothetical protein
YP_003167291.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; type IV pilus assembly PilZ; KEGG: aeh:Mlg_1937 methyl-accepting chemotaxis sensory transducer
YP_003167293.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003167294.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003167295.1	PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSp0995 probable C4-dicarboxylate transport transmembrane protein
YP_003167296.1	PFAM: MOFRL domain protein; KEGG: lch:Lcho_3177 hydroxypyruvate reductase
YP_003167297.1	KEGG: mpt:Mpe_B0470 hypothetical protein
YP_003167298.1	KEGG: bja:bll5053 putative cytochrome c binding protein
YP_003167299.1	PFAM: conserved hypothetical protein; KEGG: lch:Lcho_4297 hypothetical protein
YP_003167300.1	PFAM: TPR repeat-containing protein; SEC-C motif domain protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cts:Ctha_1311 TPR repeat-containing protein
YP_003167301.1	PFAM: PEBP family protein; KEGG: mca:MCA0141 hypothetical protein
YP_003167302.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: azo:azo0951 conserved hypothetical phosphomannose protein
YP_003167303.1	PFAM: protein of unknown function DUF82; KEGG: pol:Bpro_1634 protein of unknown function DUF82
YP_003167304.1	KEGG: bvi:Bcep1808_3221 putative transmembrane protein
YP_003167305.1	KEGG: mac:MA1243 hypothetical protein
YP_003167306.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: reh:H16_A3527 glutathione-regulated potassium-efflux system protein KefC
YP_003167307.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1238 NAD(P)H dehydrogenase (quinone)
YP_003167308.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gme:Gmet_1083 PAS/PAC sensor signal transduction histidine kinase
YP_003167309.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54 dependent DNA-binding response regulator
YP_003167310.1	PFAM: phosphate transporter; KEGG: dar:Daro_0679 phosphate transporter
YP_003167311.1	KEGG: dar:Daro_0678 phosphate transport regulator-like protein
YP_003167312.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase
YP_003167313.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003167314.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003167315.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003167316.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003167317.1	KEGG: ade:Adeh_0129 methyltransferase type 11
YP_003167318.1	KEGG: pab:PAB0513 hypothetical protein
YP_003167319.1	PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter
YP_003167321.1	PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA
YP_003167322.1	PFAM: HhH-GPD family protein; KEGG: dar:Daro_0843 HhH-GPD
YP_003167323.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_003167324.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: tbd:Tbd_0589 cell cycle protein MesJ
YP_003167325.1	PFAM: K potassium transporter; KEGG: eba:ebA3621 potassium uptake protein
YP_003167326.1	catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA
YP_003167327.1	PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mag:amb0897 response regulator
YP_003167328.1	KEGG: dar:Daro_2995 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167329.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dar:Daro_2993 TRAP dicarboxylate transporter-DctP subunit
YP_003167330.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: eba:ebA4159 C4-dicarboxylate transport system, permease small subunit
YP_003167331.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_1481 TRAP dicarboxylate transporter-DctM subunit
YP_003167332.1	PFAM: nucleoside diphosphate kinase; KEGG: dar:Daro_2989 nucleoside diphosphate kinase
YP_003167333.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: dar:Daro_2988 conserved hypothetical protein 48
YP_003167334.1	KEGG: dar:Daro_2987 TPR repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_003167335.1	KEGG: dar:Daro_2986 hypothetical protein
YP_003167336.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_003167337.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_003167338.1	KEGG: dar:Daro_2983 putative transmembrane protein
YP_003167339.1	TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: dar:Daro_2982 pyrrolo-quinoline quinone
YP_003167340.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_003167341.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: dar:Daro_2004 low molecular weight phosphotyrosine protein phosphatase
YP_003167342.1	KEGG: mgm:Mmc1_1602 hypothetical protein
YP_003167343.1	KEGG: mag:amb3329 hypothetical 1041 kDa protein in HypE 3'region; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CheB methylesterase; MCP methyltransferase CheR-type; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167344.1	PFAM: protein of unknown function DUF323; KEGG: dol:Dole_2017 protein of unknown function DUF323
YP_003167345.1	Represses a number of genes involved in the response to DNA damage
YP_003167346.1	KEGG: dar:Daro_1941 hypothetical protein
YP_003167347.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein
YP_003167348.1	PFAM: phosphoglucose isomerase (PGI); KEGG: dar:Daro_0581 glucose-6-phosphate isomerase
YP_003167349.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_003167350.1	KEGG: pna:Pnap_1106 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase
YP_003167351.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: pna:Pnap_1107 glycogen/starch synthases, ADP-glucose type
YP_003167352.1	PFAM: conserved hypothetical protein; KEGG: tbd:Tbd_1657 hypothetical protein
YP_003167353.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_003167354.1	PFAM: Heavy metal transport/detoxification protein; KEGG: azo:azo1356 conserved hypothetical copper chaperon
YP_003167355.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1051 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_003167356.1	KEGG: dar:Daro_1049 hypothetical protein
YP_003167357.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_003167358.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_1047 cyclic nucleotide-binding:bacterial regulatory protein, Crp
YP_003167359.1	PFAM: Invasion gene expression up-regulator SirB; KEGG: azo:azo3083 hypothetical protein
YP_003167360.1	KEGG: dar:Daro_0998 hypothetical protein
YP_003167361.1	KEGG: dar:Daro_0997 hypothetical protein
YP_003167362.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA6294 hypothetical protein
YP_003167363.1	PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA
YP_003167364.1	KEGG: dar:Daro_3026 conserved hypothetical protein 2281, catalytic
YP_003167365.1	KEGG: dar:Daro_3025 hypothetical protein
YP_003167366.1	PFAM: NUDIX hydrolase; KEGG: dar:Daro_3024 NUDIX hydrolase
YP_003167367.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_003167368.1	PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein
YP_003167369.1	PFAM: helix-turn-helix domain protein; KEGG: aba:Acid345_2427 transcriptional regulator, XRE family
YP_003167371.1	PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3900 hypothetical protein
YP_003167372.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: mgm:Mmc1_2015 DEAD/DEAH box helicase domain protein
YP_003167373.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: mgm:Mmc1_2016 helicase domain protein
YP_003167374.1	PFAM: ATPase; KEGG: eba:ebA1504 conserved hypothetical protein, predicted archaeal ATPase family
YP_003167375.1	KEGG: mgm:Mmc1_2017 putative type II DNA modification enzyme
YP_003167376.1	PFAM: Integrase catalytic region; KEGG: pna:Pnap_0429 integrase, catalytic region
YP_003167377.1	PFAM: von Willebrand factor type A; KEGG: ana:all1782 hypothetical protein
YP_003167378.1	KEGG: bac:BamMC406_4510 NERD domain protein
YP_003167379.1	KEGG: eba:ebA6011 cobyrinic acid a,c-diamide synthase:dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase
YP_003167380.1	TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_2899 biotin biosynthesis protein BioC
YP_003167381.1	PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1890 BioH protein
YP_003167382.1	KEGG: har:HEAR1669 7-keto-8-aminopelargonic acid synthetase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III
YP_003167383.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dar:Daro_2895 aminotransferase
YP_003167384.1	KEGG: dar:Daro_2894 hypothetical protein
YP_003167385.1	KEGG: ote:Oter_1104 hypothetical protein
YP_003167386.1	KEGG: dac:Daci_1499 hypothetical protein
YP_003167388.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dar:Daro_3112 chemotaxis sensory transducer
YP_003167389.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_3057 protein of unknown function DUF6, transmembrane
YP_003167390.1	PFAM: protein of unknown function DUF1555; KEGG: mhu:Mhun_2702 hypothetical protein
YP_003167391.1	PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: lch:Lcho_0187 multiple antibiotic resistance (MarC)-related protein
YP_003167392.1	KEGG: pin:Ping_3331 ABC-type uncharacterized transport system, periplasmic component
YP_003167393.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_7068 hypothetical protein
YP_003167394.1	PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB1643 putative inner membrane transport protein
YP_003167395.1	PFAM: alanine racemase domain protein; KEGG: pac:PPA2282 amino acid racemase
YP_003167396.1	PFAM: Patatin; KEGG: rpd:RPD_2292 patatin
YP_003167397.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce0689 hypothetical protein
YP_003167398.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: tbd:Tbd_1269 response regulator receiver modulated diguanylate cyclase/phosphodiesterase
YP_003167399.1	KEGG: gdi:GDI0387 hypothetical protein
YP_003167400.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tbd:Tbd_2604 transcriptional regulator, LysR family
YP_003167401.1	TIGRFAM: ribosomal subunit interface protein; KEGG: mmw:Mmwyl1_3632 putative sigma 54 modulation protein/ribosomal protein S30EA
YP_003167403.1	PFAM: Integral membrane protein TerC; KEGG: lch:Lcho_4156 integral membrane protein TerC
YP_003167404.1	PFAM: UspA domain protein; KEGG: lch:Lcho_4155 UspA domain protein
YP_003167405.1	PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein
YP_003167406.1	KEGG: nar:Saro_0394 hypothetical protein
YP_003167407.1	PFAM: SNARE associated Golgi protein; KEGG: aeh:Mlg_1827 hypothetical protein
YP_003167408.1	PFAM: Ion transport protein; KEGG: psa:PST_3753 voltage-gated sodium channel subunit
YP_003167409.1	putative metalloprotease
YP_003167410.1	KEGG: cph:Cpha266_1987 hypothetical protein
YP_003167411.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0264 hypothetical protein
YP_003167412.1	KEGG: rso:RSc0263 hypothetical protein
YP_003167413.1	KEGG: net:Neut_2230 CRISPR-associated protein Cas2
YP_003167414.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: net:Neut_2229 CRISPR-associated protein Cas1
YP_003167415.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: net:Neut_2228 CRISPR-associated protein Cas2
YP_003167416.1	KEGG: lch:Lcho_2219 hypothetical protein
YP_003167417.1	KEGG: npu:Npun_R5806 hypothetical protein
YP_003167418.1	KEGG: neu:NE0117 hypothetical protein
YP_003167419.1	TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein DxTHG; KEGG: neu:NE0115 hypothetical protein
YP_003167420.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: hha:Hhal_0631 CRISPR-associated RAMP protein, Cmr6 family
YP_003167421.1	TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; KEGG: hha:Hhal_0630 CRISPR-associated protein, Cmr5 family
YP_003167422.1	TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: hha:Hhal_0629 CRISPR-associated RAMP protein, Cmr4 family
YP_003167423.1	KEGG: hha:Hhal_0628 CRISPR-associated protein, Cmr3 family
YP_003167424.1	TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: hha:Hhal_0627 CRISPR-associated protein, Crm2 family
YP_003167425.1	KEGG: hha:Hhal_0626 hypothetical protein
YP_003167426.1	TIGRFAM: CRISPR-associated protein, NE0113 family; PFAM: CRISPR-associated protein NE0113; KEGG: net:Neut_2225 CRISPR-associated protein, NE0113 family protein
YP_003167427.1	TIGRFAM: YD repeat protein; PFAM: WD-40 repeat protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: scl:sce4551 protein kinase
YP_003167428.1	KEGG: chu:CHU_1024 possible membrane protein
YP_003167429.1	KEGG: chu:CHU_1023 hypothetical protein
YP_003167431.1	PFAM: Extracellular ligand-binding receptor; KEGG: glo:Glov_0532 extracellular ligand-binding receptor
YP_003167432.1	PFAM: Extracellular ligand-binding receptor; KEGG: ppd:Ppro_1970 extracellular ligand-binding receptor
YP_003167433.1	KEGG: har:HEAR1210 hypothetical protein; putative signal peptide; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167434.1	PFAM: ABC-2 type transporter; KEGG: rle:pRL90045 putative ABC transporter permease component
YP_003167435.1	PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related
YP_003167436.1	PFAM: secretion protein HlyD family protein; KEGG: pap:PSPA7_5975 hypothetical protein
YP_003167437.1	PFAM: Erythromycin esterase; KEGG: mxa:MXAN_0826 erythromycin esterase family protein
YP_003167438.1	PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3908 putative serine/threonine protein kinase
YP_003167439.1	PFAM: histidine kinase HAMP region domain protein; KEGG: azo:azo3909 probable sensor protein
YP_003167440.1	KEGG: cyt:cce_3036 hypothetical protein
YP_003167441.1	KEGG: dol:Dole_2678 hypothetical protein
YP_003167442.1	KEGG: pae:PA0736 hypothetical protein
YP_003167443.1	KEGG: mrd:Mrad2831_1767 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein
YP_003167444.1	KEGG: dar:Daro_0511 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain
YP_003167445.1	PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: dar:Daro_0512 transcriptional regulator, AsnC family
YP_003167446.1	PFAM: Patatin; KEGG: pol:Bpro_4614 patatin
YP_003167447.1	KEGG: reh:H16_B1608 predicted secreted hydrolase
YP_003167448.1	PFAM: protein of unknown function DUF214; KEGG: reh:H16_B1609 ABC-type transporter, duplicated permease domains
YP_003167449.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA6806 ABC transporter, ATP-binding protein
YP_003167450.1	PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: lch:Lcho_0282 metal dependent phosphohydrolase
YP_003167451.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bpt:Bpet1866 putative peptidoglycan-binding protein
YP_003167452.1	KEGG: dar:Daro_3301 hypothetical protein
YP_003167453.1	KEGG: asa:ASA_2038 hypothetical protein
YP_003167454.1	PFAM: Aldehyde Dehydrogenase; KEGG: reh:H16_A0232 NAD-dependent aldehyde dehydrogenase
YP_003167455.1	KEGG: pna:Pnap_0433 hypothetical protein
YP_003167456.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: mpt:Mpe_A0350 oxidoreductase, GMC family
YP_003167457.1	PFAM: lipase class 2; protein of unknown function DUF1234; PGAP1 family protein; KEGG: dar:Daro_1591 putative lipase transmembrane protein
YP_003167458.1	KEGG: reu:Reut_A0399 general secretion pathway protein H
YP_003167459.1	KEGG: aav:Aave_3549 Tfp pilus assembly protein FimT
YP_003167460.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: reh:H16_A0416 type IV pilus assembly protein PilV
YP_003167461.1	KEGG: mca:MCA0089 pilin-like protein
YP_003167462.1	KEGG: reu:Reut_A0403 probable transmembrane protein
YP_003167463.1	KEGG: shn:Shewana3_3129 type IV pilin biogenesis protein, putative
YP_003167464.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: tbd:Tbd_2268 TonB domain protein
YP_003167465.1	PFAM: fatty acid cistrans isomerase; KEGG: mms:mma_1197 fatty acid cis/trans isomerase
YP_003167466.1	KEGG: hne:HNE_0665 putative lipoprotein
YP_003167467.1	PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA1206 putative acetyl-coenzyme A synthetase
YP_003167468.1	PFAM: Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3900 hypothetical protein
YP_003167469.1	KEGG: rru:Rru_A0340 CRISPR-associated helicase, Cas3 family; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases
YP_003167470.1	TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: gbe:GbCGDNIH1_1693 hypothetical protein
YP_003167471.1	TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: mca:MCA0934 CRISPR-associated protein
YP_003167472.1	TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: gbe:GbCGDNIH1_1695 hypothetical protein
YP_003167473.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: rru:Rru_A0345 CRISPR-associated protein, Cas5e family
YP_003167474.1	TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: mca:MCA0931 CRISPR-associated CT1974 family protein
YP_003167475.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: rru:Rru_A0347 CRISPR-associated protein, Cas1 family
YP_003167476.1	TIGRFAM: CRISPR-associated protein Cas2; KEGG: dsh:Dshi_3221 CRISPR-associated protein Cas2
YP_003167477.1	TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: lch:Lcho_1156 addiction module component, TIGR02574 family
YP_003167478.1	KEGG: lch:Lcho_1155 CRISPR-associated protein Cas4
YP_003167479.1	PFAM: ribosomal protein S6; KEGG: azo:azo0718 30S ribosomal protein S6
YP_003167480.1	KEGG: dar:Daro_1217 primosomal replication protein N
YP_003167481.1	PFAM: ribosomal protein S18; KEGG: dar:Daro_1218 SSU ribosomal protein S18P
YP_003167482.1	PFAM: ribosomal protein L9; KEGG: dar:Daro_1219 LSU ribosomal protein L9P
YP_003167483.1	KEGG: dar:Daro_1220 primary replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase
YP_003167484.1	PFAM: transglutaminase domain protein; KEGG: dar:Daro_1221 transglutaminase-like
YP_003167485.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: azo:azo2198 putative PhoH-related protein
YP_003167486.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1223 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_003167487.1	KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase, putative
YP_003167488.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ppg:PputGB1_5036 channel protein, hemolysin III family
YP_003167489.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_003167490.1	KEGG: dar:Daro_1718 ATP-dependent Clp protease proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP
YP_003167491.1	binds and unfolds substrates as part of the ClpXP protease
YP_003167492.1	KEGG: azo:azo2069 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003167493.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dar:Daro_1933 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_003167494.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_003167495.1	PFAM: chaperonin Cpn10; KEGG: eba:ebB35 chaperonins cpn10 (10 kDa subunit)
YP_003167496.1	PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902
YP_003167497.1	KEGG: psa:PST_0577 hypothetical protein
YP_003167498.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003167499.1	KEGG: rfr:Rfer_1217 hypothetical protein
YP_003167500.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: rxy:Rxyl_2864 methionine sulfoxide reductase A
YP_003167501.1	PFAM: alpha/beta hydrolase fold; KEGG: nar:Saro_2613 alpha/beta hydrolase
YP_003167502.1	PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0655 beta-lactamase-like
YP_003167503.1	KEGG: dar:Daro_3968 hypothetical protein
YP_003167504.1	PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3969 hydrogenase expression/formation protein (HUPF/HYPC)
YP_003167505.1	TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dar:Daro_3970 HybD peptidase. Aspartic peptidase. MEROPS family A31
YP_003167506.1	PFAM: nickel-dependent hydrogenase large subunit; KEGG: dar:Daro_3971 nickel-dependent hydrogenase, large subunit
YP_003167507.1	KEGG: rfr:Rfer_4090 predicted hydrogenase 2 cytochrome b type component
YP_003167508.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003167509.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003167510.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003167511.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003167512.1	KEGG: rfr:Rfer_4090 predicted hydrogenase 2 cytochrome b type component
YP_003167513.1	Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2
YP_003167514.1	KEGG: dar:Daro_3974 Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein
YP_003167515.1	KEGG: dar:Daro_3946 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003167516.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dar:Daro_1296 outer membrane lipoprotein carrier protein LolA
YP_003167517.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: dar:Daro_1295 DNA translocase FtsK
YP_003167518.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_1294 cyclic nucleotide-binding:bacterial regulatory protein, Crp
YP_003167519.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dar:Daro_1293 thioredoxin reductase
YP_003167520.1	PFAM: Smr protein/MutS2; KEGG: azo:azo1362 hypothetical protein
YP_003167521.1	PFAM: nitrogen regulatory protein P-II; KEGG: mfa:Mfla_1885 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_003167522.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_003167523.1	PFAM: Inorganic pyrophosphatase; KEGG: dar:Daro_1289 inorganic pyrophosphatase
YP_003167524.1	PFAM: Glutathione S-transferase domain; KEGG: hch:HCH_06415 glutathione S-transferase
YP_003167525.1	PFAM: protein of unknown function DUF323; KEGG: fre:Franean1_2751 WD-40 repeat protein
YP_003167526.1	KEGG: azo:azo3381 hypothetical signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167527.1	KEGG: ote:Oter_0553 hypothetical protein
YP_003167528.1	PFAM: Extracellular ligand-binding receptor; KEGG: ppd:Ppro_1970 extracellular ligand-binding receptor
YP_003167529.1	PFAM: protein of unknown function DUF344; KEGG: dar:Daro_0434 protein of unknown function DUF344
YP_003167530.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: bbr:BB3255 putative glutathione-S-transferase
YP_003167531.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA3300 potential fumarylacetoacetate hydrolase (extradiol catechol pathway)
YP_003167532.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein
YP_003167533.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo1316 putative ATP binding protein
YP_003167534.1	PFAM: conserved hypothetical protein; KEGG: azo:azo1315 hypothetical protein
YP_003167535.1	PFAM: NADPH-dependent FMN reductase; KEGG: har:HEAR1499 conserved hypothetical protein, putative NADPH-dependent FMN reductase IPR005025
YP_003167536.1	PFAM: AsmA family protein; KEGG: bbr:BB0937 hypothetical protein
YP_003167537.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2674 short chain dehydrogenase
YP_003167538.1	KEGG: dar:Daro_1730 hypothetical protein
YP_003167539.1	PFAM: Hemolysin-type calcium-binding region; KEGG: cpb:Cphamn1_0514 RTX toxins and related Ca2+-binding protein
YP_003167540.1	PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_0904 protein of unknown function DUF323
YP_003167541.1	KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase)
YP_003167542.1	KEGG: mgm:Mmc1_1133 protein of unknown function DUF323
YP_003167543.1	PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: hau:Haur_3236 protein of unknown function DUF323
YP_003167544.1	SMART: TIR protein; KEGG: gvi:gll4095 hypothetical protein
YP_003167545.1	PFAM: Catalase domain protein; KEGG: mpt:Mpe_A1580 putative catalase
YP_003167546.1	KEGG: har:HEAR1667 putative nitric oxide reductase NorZ
YP_003167547.1	TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: regulatory protein GntR HTH; protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: pla:Plav_2689 transcriptional regulator, BadM/Rrf2 family
YP_003167548.1	PFAM: high-affinity nickel-transporter; KEGG: bvi:Bcep1808_7462 high-affinity nickel-transporter
YP_003167549.1	PFAM: protein of unknown function DUF156; KEGG: vei:Veis_2756 protein of unknown function DUF156
YP_003167550.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: dar:Daro_3555 chromate transporter
YP_003167551.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_003167552.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_003167553.1	KEGG: dar:Daro_2001 hypothetical protein
YP_003167554.1	PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_3188 HD domain protein
YP_003167555.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dar:Daro_1922 glycerol kinase
YP_003167556.1	PFAM: regulatory protein TetR; KEGG: dar:Daro_1210 regulatory protein, TetR
YP_003167557.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit
YP_003167558.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: dar:Daro_1212 electron transfer flavoprotein beta-subunit:electron transfer flavoprotein, alpha subunit
YP_003167559.1	KEGG: dar:Daro_1213 probable integral membrane protein
YP_003167560.1	KEGG: azo:azo3335 putative type 4 pilus biogenesis
YP_003167561.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase
YP_003167562.1	PFAM: thioesterase superfamily protein; KEGG: dar:Daro_1937 thioesterase superfamily
YP_003167563.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_003167564.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_003167565.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_1879 two component transcriptional regulator, winged helix family
YP_003167566.1	PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE2076 LysM motif
YP_003167567.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE2 domain protein; KEGG: hch:HCH_05010 signal transduction histidine kinase
YP_003167568.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pap:PSPA7_4669 hypothetical protein
YP_003167569.1	KEGG: noc:Noc_2286 hypothetical protein
YP_003167570.1	KEGG: cya:CYA_0261 hypothetical protein
YP_003167571.1	KEGG: gur:Gura_1475 regulator of chromosome condensation, RCC1
YP_003167572.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_3868 diguanylate cyclase
YP_003167573.1	PFAM: dihydrouridine synthase DuS; KEGG: azo:azo1522 hypothetical protein
YP_003167574.1	PFAM: putative methyltransferase; KEGG: azo:azo1523 tRNA (guanine-N7-)-methyltransferase
YP_003167575.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_003167576.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20
YP_003167577.1	PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: mrd:Mrad2831_5886 platelet-activating factor acetylhydrolase plasma/intracellular isoform II
YP_003167578.1	KEGG: dar:Daro_1930 hypothetical protein
YP_003167579.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_2710 GCN5-related N-acetyltransferase
YP_003167580.1	TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hau:Haur_2625 6-phosphogluconate dehydrogenase, decarboxylating
YP_003167581.1	KEGG: gfo:GFO_2580 conserved hypothetical protein, membrane
YP_003167582.1	KEGG: amr:AM1_2247 hypothetical protein
YP_003167584.1	PFAM: PilT protein domain protein; KEGG: dac:Daci_3962 PilT protein domain protein
YP_003167585.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE2111 hypothetical protein
YP_003167586.1	PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dar:Daro_3617 peptidase C14, caspase catalytic subunit P20
YP_003167587.1	KEGG: eba:ebA5037 hypothetical protein
YP_003167588.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: lch:Lcho_3187 tetratricopeptide TPR_2 repeat protein
YP_003167589.1	PFAM: pseudouridine synthase; KEGG: dar:Daro_4154 ribosomal large subunit pseudouridine synthase A
YP_003167590.1	KEGG: hch:HCH_04153 permease of the major facilitator superfamily
YP_003167591.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_003167592.1	PFAM: Auxin Efflux Carrier; KEGG: eca:ECA4317 putative transporter
YP_003167593.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_003167594.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: azo:azo0323 2-nitropropane dioxygenase
YP_003167595.1	PFAM: protein of unknown function DUF519; KEGG: dar:Daro_2736 protein of unknown function DUF519
YP_003167596.1	KEGG: dar:Daro_2737 hypothetical protein
YP_003167597.1	PFAM: HpcH/HpaI aldolase; KEGG: dar:Daro_2868 malyl-CoA lyase or citrate lyase, beta subunit
YP_003167598.1	catalyzes the oxidation of malate to oxaloacetate
YP_003167599.1	PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: azo:azo1548 putative GntR-family transcriptional regulator
YP_003167600.1	TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: azo:azo1549 succinate dehydrogenase
YP_003167601.1	TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: dar:Daro_2864 succinate dehydrogenase subunit D
YP_003167602.1	KEGG: dar:Daro_2863 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_003167603.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_003167604.1	PFAM: protein of unknown function DUF339; KEGG: dar:Daro_2861 protein of unknown function DUF339
YP_003167605.1	KEGG: eba:ebA6687 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_003167606.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_003167607.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_003167608.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_003167609.1	KEGG: dsh:Dshi_2359 hypothetical protein
YP_003167610.1	PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0841 beta-lactamase-like
YP_003167612.1	KEGG: nmu:Nmul_A0197 hypothetical protein
YP_003167613.1	PFAM: regulatory protein MarR; regulatory protein Crp; KEGG: saz:Sama_2690 transcriptional regulator, MarR family
YP_003167614.1	PFAM: cyclase/dehydrase; KEGG: har:HEAR2693 conserved hypothetical protein; putative signal peptide
YP_003167615.1	KEGG: pla:Plav_0433 hypothetical protein
YP_003167616.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc0469 hypothetical protein
YP_003167617.1	KEGG: dar:Daro_1906 patatin
YP_003167618.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU2677 hypothetical protein
YP_003167619.1	PFAM: alpha/beta hydrolase fold; KEGG: eba:ebA4860 putative hydrolase, alpha/beta hydrolase fold family
YP_003167620.1	PFAM: protein of unknown function DUF465; KEGG: dar:Daro_1124 protein of unknown function DUF465
YP_003167621.1	PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport
YP_003167622.1	PFAM: AzlC family protein; KEGG: hau:Haur_0092 AzlC family protein
YP_003167623.1	KEGG: dar:Daro_1125 hypothetical protein
YP_003167624.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_003167625.1	molecular chaperone
YP_003167626.1	KEGG: bxe:Bxe_A3324 hypothetical protein
YP_003167627.1	KEGG: dar:Daro_1150 hypothetical protein
YP_003167628.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1151 type II secretion system protein E:general secretory system II, protein E, N-terminal
YP_003167629.1	TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pol:Bpro_0678 catalase/peroxidase HPI
YP_003167631.1	TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: eba:ebA2722 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit
YP_003167632.1	TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: eba:ebA2723 ATP-dependent exoDNAse beta subunit
YP_003167633.1	TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: eba:ebA2724 exodeoxyribonuclease V, gamma subunit
YP_003167634.1	KEGG: xac:XAC3351 hypothetical protein
YP_003167635.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: azo:azo3545 leucine export protein LeuE
YP_003167636.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dac:Daci_4264 metal dependent phosphohydrolase
YP_003167637.1	KEGG: bca:BCE_A0238 conserved hypothetical protein TIGR00052
YP_003167638.1	PFAM: Methyltransferase type 11; SMART: TIR protein; KEGG: npu:Npun_R0857 GUN4 domain protein
YP_003167640.1	KEGG: rfr:Rfer_0080 collagen triple helix protein
YP_003167641.1	KEGG: dar:Daro_2084 hypothetical protein
YP_003167642.1	PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0045 ABC transporter related
YP_003167643.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eba:ebA1369 putative transcription regulator protein, LysR family
YP_003167644.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3581 major facilitator superfamily MFS_1
YP_003167645.1	PFAM: thioesterase superfamily protein; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family
YP_003167646.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: rpd:RPD_1049 iron-containing alcohol dehydrogenase
YP_003167647.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpe:RPE_1227 antibiotic biosynthesis monooxygenase
YP_003167648.1	PFAM: NHL repeat containing protein; KEGG: rrs:RoseRS_0355 NHL repeat containing protein
YP_003167649.1	KEGG: mca:MCA0717 lipoprotein, putative
YP_003167650.1	PFAM: beta-lactamase; KEGG: afw:Anae109_3459 beta-lactamase
YP_003167651.1	KEGG: abu:Abu_1615 hypothetical protein
YP_003167652.1	KEGG: rrs:RoseRS_3946 hypothetical protein
YP_003167653.1	PFAM: Cold-shock protein DNA-binding; KEGG: hch:HCH_06546 hypothetical protein
YP_003167654.1	KEGG: mmw:Mmwyl1_0339 membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG)
YP_003167656.1	KEGG: mab:MAB_2859c transglutaminase family protein
YP_003167657.1	PFAM: protein of unknown function DUF1194; KEGG: ava:Ava_2299 protein of unknown function DUF1194
YP_003167658.1	PFAM: regulatory protein TetR; KEGG: maq:Maqu_3068 transcriptional regulator, TetR family
YP_003167659.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aby:ABAYE0375 putative acyl-CoA dehydrogenase
YP_003167660.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1205 CoA-binding
YP_003167661.1	KEGG: maq:Maqu_2380 hypothetical protein
YP_003167662.1	KEGG: mgm:Mmc1_1045 putative transposase
YP_003167663.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0838 ABC transporter related
YP_003167664.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease
YP_003167665.1	PFAM: Patatin; KEGG: rfr:Rfer_0361 patatin
YP_003167666.1	KEGG: mar:MAE_14250 hypothetical protein
YP_003167667.1	PFAM: protein of unknown function DUF88; KEGG: eba:ebA2897 hypothetical protein
YP_003167668.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_003167669.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_003167670.1	KEGG: azo:azo3144 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_003167671.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2497 methyl-accepting chemotaxis sensory transducer
YP_003167672.1	KEGG: dac:Daci_2490 hypothetical protein
YP_003167673.1	KEGG: dar:Daro_3183 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK
YP_003167674.1	KEGG: dar:Daro_3182 poly(A) polymerase, PcnB; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region
YP_003167675.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: azo:azo3139 haloacid dehalogenase-like hydrolase family protein
YP_003167676.1	TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: dar:Daro_3180 hypothetical protein
YP_003167677.1	KEGG: dar:Daro_3174 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_003167678.1	KEGG: kra:Krad_3236 hypothetical protein
YP_003167679.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: azo:azo3135 membrane fusion protein
YP_003167680.1	PFAM: acriflavin resistance protein; KEGG: azo:azo3134 RND efflux transporter, permease protein
YP_003167682.1	PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_1677 alpha/beta hydrolase fold
YP_003167683.1	KEGG: tbd:Tbd_0827 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_003167684.1	KEGG: dar:Daro_2193 ankyrin
YP_003167685.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_2194 TatD-related deoxyribonuclease
YP_003167686.1	PFAM: type IV pilus assembly PilZ; KEGG: dar:Daro_2195 type IV pilus assembly PilZ
YP_003167687.1	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: dar:Daro_2196 DNA polymerase III, delta prime subunit
YP_003167688.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_003167689.1	PFAM: aminodeoxychorismate lyase; KEGG: dar:Daro_2198 aminodeoxychorismate lyase
YP_003167690.1	TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: dar:Daro_2199 glycine cleavage T protein (aminomethyl transferase)
YP_003167691.1	PFAM: protein of unknown function DUF833; KEGG: dar:Daro_2200 protein of unknown function DUF833
YP_003167692.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dar:Daro_2201 ErfK/YbiS/YcfS/YnhG
YP_003167693.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dar:Daro_2202 tRNA-adenosine deaminase
YP_003167694.1	PFAM: cyclic nucleotide-binding; KEGG: scl:sce8187 cAMP-dependent protein kinase regulatory subunit
YP_003167695.1	KEGG: tcx:Tcr_0553 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_003167696.1	PFAM: 2-phosphosulfolactate phosphatase; KEGG: dar:Daro_4162 2-phosphosulfolactate phosphatase
YP_003167697.1	KEGG: pap:PSPA7_5846 hypothetical protein
YP_003167698.1	KEGG: rso:RSc0786 hypothetical protein
YP_003167699.1	KEGG: sco:SCO1292 secreted protein
YP_003167700.1	PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein
YP_003167701.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2
YP_003167702.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpc:Cpar_1378 TPR repeat-containing protein
YP_003167703.1	KEGG: eba:ebA826 hypothetical protein
YP_003167704.1	KEGG: dar:Daro_3271 hypothetical protein
YP_003167705.1	KEGG: pna:Pnap_2879 cytochrome c, class I
YP_003167706.1	PFAM: cytochrome d1 heme region; KEGG: mag:amb1395 nitrite reductase precursor
YP_003167707.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_3275 uroporphyrinogen-III C-methyltransferase
YP_003167708.1	TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dar:Daro_3664 1,4-dihydroxy-2-naphtoate prenyltransferase
YP_003167709.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mgm:Mmc1_0774 NADH:flavin oxidoreductase/NADH oxidase
YP_003167710.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_003167711.1	KEGG: lch:Lcho_2916 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases
YP_003167712.1	KEGG: mxa:MXAN_6823 hypothetical protein
YP_003167713.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: lbl:LBL_0703 acyl-CoA dehydrogenase
YP_003167714.1	PFAM: MaoC domain protein dehydratase; KEGG: lic:LIC11359 MaoC
YP_003167715.1	KEGG: nca:Noca_1772 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein
YP_003167716.1	PFAM: ArgK protein; SMART: AAA ATPase; KEGG: rru:Rru_A2944 ArgK protein
YP_003167717.1	TIGRFAM: crotonyl-CoA reductase; PFAM: CBS domain containing protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lbl:LBL_0505 zinc-binding dehydrogenase
YP_003167718.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A3371 zinc-containing alcohol dehydrogenase superfamily
YP_003167719.1	PFAM: MaoC domain protein dehydratase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bph:Bphy_6753 MaoC domain protein dehydratase
YP_003167720.1	KEGG: rrs:RoseRS_4177 hypothetical protein
YP_003167721.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rrs:RoseRS_4176 L-carnitine dehydratase/bile acid-inducible protein F
YP_003167722.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rca:Rcas_0910 L-carnitine dehydratase/bile acid-inducible protein F
YP_003167723.1	KEGG: rca:Rcas_0911 acyl-CoA transferase/carnitine dehydratase-like protein
YP_003167724.1	PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase
YP_003167725.1	PFAM: MaoC domain protein dehydratase; KEGG: cau:Caur_0173 MaoC domain protein dehydratase
YP_003167726.1	KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase
YP_003167727.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: lch:Lcho_2150 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_003167728.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding
YP_003167729.1	unknown function
YP_003167730.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_003167731.1	KEGG: eba:ebA1415 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_003167732.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_003167733.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_003167734.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_003167735.1	PFAM: cytochrome B561; KEGG: azo:azo0089 conserved hypothetical hydrogenase cytochrome b-type subunit
YP_003167736.1	PFAM: cytochrome c prime; KEGG: azo:azo0090 probable cytochrome c'
YP_003167737.1	KEGG: dar:Daro_3286 hypothetical protein
YP_003167738.1	KEGG: dar:Daro_3287 hypothetical protein
YP_003167739.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_003167740.1	PFAM: Glutathione S-transferase domain; KEGG: dar:Daro_3289 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal
YP_003167741.1	with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_003167742.1	KEGG: dar:Daro_0722 chemotaxis MotA protein
YP_003167743.1	PFAM: NUDIX hydrolase; KEGG: eba:ebA4673 conserved hypothetical protein, related to NUDIX hydrolase
YP_003167744.1	KEGG: tvo:TVN1411 predicted inactivated transposase
YP_003167745.1	TIGRFAM: TonB family protein; KEGG: dar:Daro_0720 TonB, C-terminal
YP_003167746.1	KEGG: reu:Reut_A2520 hypothetical protein
YP_003167747.1	KEGG: dar:Daro_0718 hypothetical protein
YP_003167748.1	TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dar:Daro_0717 4Fe-4S ferredoxin, iron-sulfur binding
YP_003167749.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: dar:Daro_0716 cytochrome c oxidase cbb3-type, subunit III
YP_003167750.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component
YP_003167751.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA5132 cytochrome-cbb3 oxidase, subunit II
YP_003167752.1	CcoN; FixN
YP_003167753.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: azo:azo1340 conserved hypothetical cytochrome oxidase maturation protein
YP_003167754.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_0711 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_003167755.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dar:Daro_3047 FMN adenylyltransferase / riboflavin kinase
YP_003167756.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_003167757.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_003167758.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dar:Daro_3044 peptidylprolyl isomerase, FKBP-type
YP_003167759.1	KEGG: azo:azo1202 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_003167760.1	KEGG: dar:Daro_2846 hypothetical protein
YP_003167761.1	PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_1996 radical SAM
YP_003167762.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000641 probable transcriptional regulator protein, GntR family
YP_003167763.1	PFAM: Extracellular ligand-binding receptor; KEGG: rru:Rru_A1746 extracellular ligand-binding receptor
YP_003167764.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain
YP_003167765.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_003167766.1	catalyzes the formation of dUMP from dUTP
YP_003167767.1	PFAM: Disulphide bond formation protein DsbB; KEGG: dar:Daro_3145 disulphide bond formation protein DsbB
YP_003167768.1	PFAM: fatty acid desaturase; KEGG: bte:BTH_I0775 fatty acid desaturase family protein
YP_003167769.1	PFAM: inner-membrane translocator; KEGG: rru:Rru_A1751 inner-membrane translocator
YP_003167770.1	PFAM: inner-membrane translocator; KEGG: rru:Rru_A1750 inner-membrane translocator
YP_003167771.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1749 ABC transporter component
YP_003167772.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mrd:Mrad2831_2252 ABC transporter related
YP_003167773.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_2519 protein of unknown function DUF6, transmembrane
YP_003167774.1	KEGG: rfr:Rfer_3250 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167775.1	KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167776.1	PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver
YP_003167777.1	PFAM: response regulator receiver; KEGG: rba:RB11201 response regulator rcp1
YP_003167778.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2762 histidine kinase
YP_003167779.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mag:amb1126 nodulation protein V
YP_003167780.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_003167781.1	PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cja:CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase
YP_003167783.1	PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: mgm:Mmc1_1547 putative phosphohistidine phosphatase, SixA
YP_003167784.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1989 protein of unknown function DUF214
YP_003167785.1	PFAM: extracellular solute-binding protein family 3; KEGG: dar:Daro_0469 extracellular solute-binding protein, family 3
YP_003167786.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_0470 GGDEF
YP_003167787.1	PFAM: TrkA-N domain protein; KEGG: dar:Daro_0498 TrkA-N
YP_003167788.1	KEGG: azo:azo1530 hypothetical protein
YP_003167789.1	PFAM: Appr-1-p processing domain protein; KEGG: eba:ebA148 hypothetical protein
YP_003167790.1	PFAM: Rhodanese domain protein; KEGG: dar:Daro_1790 rhodanese-like
YP_003167791.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; heat shock protein DnaJ domain protein; KEGG: scl:sce1629 probable serine protease
YP_003167794.1	PFAM: YcfA family protein; KEGG: syn:ssl1377 hypothetical protein
YP_003167795.1	PFAM: protein of unknown function UPF0150; KEGG: neu:NE1268 hypothetical protein
YP_003167796.1	KEGG: neu:NE0665 hypothetical protein
YP_003167797.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rfr:Rfer_2800 4Fe-4S ferredoxin, iron-sulfur binding
YP_003167798.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like
YP_003167799.1	catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_003167800.1	KEGG: rrs:RoseRS_2454 hypothetical protein
YP_003167801.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_003167802.1	KEGG: rfr:Rfer_0029 hypothetical protein
YP_003167804.1	KEGG: rcm:A1E_03320 hypothetical protein
YP_003167805.1	KEGG: pna:Pnap_1479 integral membrane protein-like protein
YP_003167806.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA6861 hypothetical protein
YP_003167807.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: lbf:LBF_0732 transcriptional regulator
YP_003167808.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppd:Ppro_1221 methyl-accepting chemotaxis sensory transducer
YP_003167809.1	KEGG: dar:Daro_0150 hypothetical protein
YP_003167810.1	PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cpb:Cphamn1_0192 protein of unknown function DUF306 MetA and HslJ
YP_003167811.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3192 methyltransferase type 12
YP_003167812.1	KEGG: gur:Gura_3193 hypothetical protein
YP_003167813.1	KEGG: gur:Gura_3194 hypothetical protein
YP_003167814.1	KEGG: gur:Gura_3195 hypothetical protein
YP_003167815.1	TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: gur:Gura_3196 FkbH like protein
YP_003167816.1	KEGG: noc:Noc_2637 UDP-glucose/GDP-mannose dehydrogenase
YP_003167817.1	KEGG: azo:azo2450 putative two-component system sensor protein; TIGRFAM: PAS sensor protein; hemerythrin-like metal-binding protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hemerythrin HHE cation binding domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167818.1	KEGG: dar:Daro_2378 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_003167819.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: azo:azo2449 putative two component response regulator
YP_003167820.1	PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0499 putative cyclohexadienyl dehydratase
YP_003167821.1	KEGG: azo:azo2450 putative two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003167822.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mgm:Mmc1_3301 hypothetical protein
YP_003167824.1	PFAM: pentapeptide repeat protein; WD-40 repeat protein; peptidase S9B dipeptidylpeptidase IV domain protein; SMART: Pyrrolo-quinoline quinone; KEGG: scl:sce8391 WD-repeat protein
YP_003167825.1	KEGG: cak:Caul_0837 hypothetical protein
YP_003167826.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mca:MCA2293 precorrin-3B C17-methyltransferase/conserved domain protein
YP_003167827.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dar:Daro_1686 cobalamin (vitamin B12) biosynthesis CbiG protein
YP_003167828.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dar:Daro_1687 cobalamin (vitamin B12) biosynthesis CbiG protein
YP_003167829.1	TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_1688 precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase
YP_003167830.1	KEGG: dar:Daro_1689 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 12
YP_003167831.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_003167832.1	PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: dar:Daro_1691 precorrin-8X methylmutase
YP_003167833.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: azo:azo3530 conserved hypothetical protein CbiX
YP_003167834.1	KEGG: mpt:Mpe_B0473 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
YP_003167835.1	PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mpt:Mpe_B0472 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase
YP_003167836.1	KEGG: neu:NE0634 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_003167837.1	PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein
YP_003167838.1	KEGG: dar:Daro_1974 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_003167839.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_003167840.1	PFAM: protein of unknown function DUF52; KEGG: tbd:Tbd_1586 hypothetical protein
YP_003167841.1	PFAM: AMMECR1 domain protein; KEGG: dar:Daro_1970 AMMECR1
YP_003167842.1	PFAM: Radical SAM domain protein; KEGG: dar:Daro_1969 radical SAM
YP_003167843.1	KEGG: dar:Daro_1968 hypothetical protein
YP_003167844.1	PFAM: Forkhead-associated protein; KEGG: sus:Acid_0083 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes-like protein
YP_003167845.1	KEGG: bmu:Bmul_5109 hypothetical protein
YP_003167846.1	KEGG: eba:ebA1980 DnaK-related protein
YP_003167847.1	KEGG: eba:ebA1979 DnaK-related protein
YP_003167849.1	SMART: Water Stress and Hypersensitive response domain protein; KEGG: abo:ABO_2105 hypothetical protein
YP_003167850.1	PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dar:Daro_3339 6-phosphogluconate dehydrogenase, NAD-binding
YP_003167851.1	KEGG: dar:Daro_3340 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding
YP_003167852.1	PFAM: protein of unknown function UPF0047; KEGG: eba:ebA855 hypothetical protein
YP_003167853.1	PFAM: protein of unknown function DUF924; KEGG: hch:HCH_00198 hypothetical protein
YP_003167854.1	PFAM: Class I peptide chain release factor; KEGG: dar:Daro_0536 class I peptide chain release factor
YP_003167855.1	PFAM: protein of unknown function DUF1415; KEGG: lch:Lcho_2114 protein of unknown function DUF1415
YP_003167856.1	PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1030 putative conserved exported protein
YP_003167857.1	PFAM: PilT protein domain protein; KEGG: tbd:Tbd_2605 protein of unknown function DUF132
YP_003167858.1	PFAM: protein of unknown function DUF328; KEGG: rso:RSc2009 hypothetical protein
YP_003167859.1	KEGG: azo:azo3186 hypothetical protein
YP_003167860.1	KEGG: mmu:100042292 predicted gene, 100042292
YP_003167861.1	PFAM: stress protein; KEGG: nfa:nfa55680 hypothetical protein
YP_003167862.1	SMART: von Willebrand factor type A; KEGG: bvi:Bcep1808_2262 hypothetical protein
YP_003167863.1	PFAM: toxic anion resistance family protein; KEGG: bvi:Bcep1808_2263 toxic anion resistance family protein
YP_003167864.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_003167865.1	KEGG: dar:Daro_1986 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_003167866.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_1985 regulatory protein, LysR:LysR, substrate-binding
YP_003167867.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1984 hypothetical protein
YP_003167868.1	TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rfr:Rfer_0518 thiamine pyrophosphate enzyme-like TPP binding protein
YP_003167869.1	PFAM: regulatory protein AsnC/Lrp family; KEGG: azo:azo2407 Bkd operon transcriptional regulator
YP_003167870.1	PFAM: protein of unknown function DUF477; KEGG: bja:bll7265 hypothetical protein
YP_003167871.1	PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3401 protein of unknown function DUF477
YP_003167872.1	PFAM: LemA family protein; KEGG: bte:BTH_I0284 LemA family protein
YP_003167873.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: dar:Daro_1983 phage SPO1 DNA polymerase-related protein
YP_003167874.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_1982 SSU ribosomal protein S18P alanine acetyltransferase
YP_003167875.1	PFAM: peptidase M22 glycoprotease; KEGG: dar:Daro_1981 peptidase M22, glycoprotease
YP_003167876.1	TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: cau:Caur_3073 glycogen synthase
YP_003167877.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: afw:Anae109_3071 alpha amylase catalytic region
YP_003167878.1	KEGG: syn:sll1356 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35
YP_003167879.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_0458 secretion protein HlyD
YP_003167880.1	PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein
YP_003167881.1	PFAM: enolase; KEGG: tde:TDE0949 enolase
YP_003167882.1	KEGG: fre:Franean1_7082 hypothetical protein
YP_003167883.1	PFAM: major facilitator superfamily MFS_1; KEGG: cau:Caur_0011 major facilitator superfamily MFS_1
YP_003167884.1	KEGG: cau:Caur_0010 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_003167885.1	PFAM: regulatory protein ArsR; KEGG: reh:H16_A2175 transcriptional regulator, ArsR-family
YP_003167886.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2636 arsenical-resistance protein ACR3
YP_003167888.1	KEGG: rpe:RPE_2352 hypothetical protein
YP_003167889.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like
YP_003167890.1	PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5
YP_003167891.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_003167892.1	KEGG: ppd:Ppro_0850 F0F1-type ATP synthase epsilon subunit-like protein
YP_003167893.1	KEGG: ppd:Ppro_0849 putative ATP synthase protein I
YP_003167894.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_003167895.1	PFAM: H+transporting two-sector ATPase C subunit; KEGG: lpc:LPC_2223 hypothetical protein
YP_003167896.1	PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: hch:HCH_00918 F0F1-type ATP synthase, subunit B
YP_003167897.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_003167898.1	PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_1479 helicase domain protein
YP_003167899.1	KEGG: npu:Npun_AR269 putative transcriptional regulator
YP_003167900.1	KEGG: pvi:Cvib_0637 hypothetical protein
YP_003167902.1	PFAM: SMC domain protein; KEGG: bpe:BP3115 hypothetical protein
YP_003167903.1	KEGG: rba:RB459 hypothetical protein
YP_003167904.1	KEGG: ppd:Ppro_0844 ATP synthase F1, gamma subunit
YP_003167905.1	KEGG: sat:SYN_02957 hypothetical membrane protein
YP_003167906.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: azo:azo0102 putative thiol:disulphide oxidoreductase
YP_003167907.1	PFAM: transglutaminase domain protein; KEGG: eba:ebA3478 predicted transglutaminase-like enzyme, putative cysteine protease
YP_003167908.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bpl:BURPS1106A_0069 acyl-CoA dehydrogenase
YP_003167909.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B4754 short-chain dehydrogenase/reductase SDR
YP_003167910.1	PFAM: Thiolase; KEGG: mpt:Mpe_A0178 lipid-transfer protein
YP_003167911.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2728 chemotaxis sensory transducer
YP_003167912.1	PFAM: Putative ParB-like nuclease; KEGG: rso:RSc0706 hypothetical protein
YP_003167913.1	KEGG: mca:MCA1588 hypothetical protein
YP_003167914.1	PFAM: peptidase M16 domain protein; KEGG: bbr:BB3932 putative zinc protease
YP_003167915.1	TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: rfr:Rfer_2963 large conductance mechanosensitive channel protein
YP_003167916.1	KEGG: psp:PSPPH_0815 calcium binding hemolysin protein, putative; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein
YP_003167918.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2547 ABC transporter related
YP_003167919.1	PFAM: protein of unknown function DUF1330; KEGG: mag:amb4166 hypothetical protein
YP_003167920.1	KEGG: cch:Cag_0293 putative cytoplasmic protein
YP_003167921.1	PFAM: restriction modification system DNA specificity domain; KEGG: cau:Caur_1813 restriction modification system DNA specificity domain
YP_003167922.1	PFAM: protein of unknown function DUF1016; KEGG: vei:Veis_1750 protein of unknown function DUF1016
YP_003167923.1	PFAM: N-6 DNA methylase; KEGG: mhu:Mhun_2789 N-6 DNA methylase
YP_003167924.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1917 hypothetical protein
YP_003167925.1	KEGG: pne:Pnec_0603 protein of unknown function DUF1330
YP_003167926.1	KEGG: bxe:Bxe_B0621 hypothetical protein
YP_003167927.1	KEGG: rfr:Rfer_2048 hypothetical protein
YP_003167928.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_1292 transcriptional regulator, LysR family
YP_003167929.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: azo:azo1280 ferredoxin-NADP+ reductase
YP_003167930.1	KEGG: aba:Acid345_0352 hypothetical protein
YP_003167931.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: azo:azo0248 probable DnaK suppressor protein
YP_003167932.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azo:azo1913 hypothetical protein
YP_003167933.1	PFAM: class II aldolase/adducin family protein; KEGG: dar:Daro_3336 class II aldolase/adducin, N-terminal
YP_003167934.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_003167935.1	KEGG: dar:Daro_1791 hypothetical protein
YP_003167936.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppr:PBPRA1878 putative lipase/esterase protein
YP_003167937.1	PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_1138 beta-lactamase domain protein
YP_003167938.1	KEGG: mgm:Mmc1_0553 hypothetical protein
YP_003167939.1	catalyzes the transfer of palmitate to lipid A
YP_003167940.1	KEGG: dar:Daro_3725 hypothetical protein
YP_003167941.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_003167942.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_3727 TPR repeat:tetratricopeptide TPR_4
YP_003167943.1	PFAM: outer membrane lipoprotein LolB; KEGG: dar:Daro_3728 outer membrane lipoprotein LolB
YP_003167944.1	KEGG: dar:Daro_3729 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase
YP_003167945.1	KEGG: dar:Daro_3730 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_003167946.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_003167947.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_003167948.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: neu:NE1823 translation-associated GTPase
YP_003167949.1	PFAM: regulatory protein DeoR; filamentation induced by cAMP protein Fic; KEGG: neu:NE2505 hypothetical protein
YP_003167950.1	PFAM: Secreted repeat of unknown function; KEGG: dar:Daro_0520 secreted repeat of unknown function
YP_003167951.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: har:HEAR3276 putative RNA polymerase sigma factor
YP_003167952.1	KEGG: mag:amb2645 predicted transmembrane transcriptional regulator
YP_003167953.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003167954.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003167955.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003167956.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003167957.1	PFAM: Sel1 domain protein repeat-containing protein; peptidase C14 caspase catalytic subunit p20; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein
YP_003167958.1	KEGG: sit:TM1040_1986 hypothetical protein
YP_003167959.1	PFAM: permease; KEGG: dar:Daro_2949 permease
YP_003167960.1	KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein
YP_003167961.1	KEGG: rec:RHECIAT_PA0000112 putative C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_003167962.1	TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; KEGG: dar:Daro_0385 phenylacetic acid degradation protein PaaY
YP_003167963.1	PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: dar:Daro_0386 phenylacetic acid degradation operon negative regulatory protein PaaX
YP_003167964.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_0368 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region
YP_003167965.1	KEGG: dar:Daro_0369 hypothetical protein
YP_003167966.1	TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase; KEGG: dar:Daro_0370 phenylacetic acid degradation protein paaN2
YP_003167967.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_003167968.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_003167969.1	TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: dar:Daro_0373 phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD
YP_003167970.1	KEGG: dar:Daro_0375 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase
YP_003167971.1	KEGG: gka:GK0748 hypothetical protein
YP_003167973.1	KEGG: mac:MA3218 hypothetical protein
YP_003167974.1	PFAM: peptidase C1A papain; KEGG: mba:Mbar_A0734 cysteine protease (papain C1 family)
YP_003167975.1	KEGG: sgr:SGR_3379 hypothetical protein
YP_003167977.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: lch:Lcho_2589 response regulator receiver modulated metal dependent phosphohydrolase
YP_003167978.1	KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003167979.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_003167980.1	PFAM: ribosomal protein L33; KEGG: nmn:NMCC_1822 50S ribosomal protein L33
YP_003167981.1	PFAM: ribosomal protein L28; KEGG: rfr:Rfer_3180 50S ribosomal protein L28
YP_003167982.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_0814 assimilatory nitrate reductase (NADH) alpha subunit apoprotein
YP_003167983.1	PFAM: Glycosyl transferase, family 3-like; KEGG: dar:Daro_0815 hypothetical protein
YP_003167984.1	PFAM: NUDIX hydrolase; KEGG: pfo:PflO1_3290 NUDIX hydrolase
YP_003167985.1	PFAM: arsenate reductase and related; KEGG: dar:Daro_2747 conserved hypothetical protein ArsC related
YP_003167986.1	KEGG: mms:mma_0696 hypothetical protein
YP_003167987.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_0816 assimilatory nitrite reductase (NAD(P)H) large subunit precursor
YP_003167988.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pau:PA14_41540 assimilatory nitrite reductase small subunit
YP_003167989.1	PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA1213 nitrate transporter
YP_003167990.1	PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: dar:Daro_0826 protein kinase:protein phosphatase 2C-like
YP_003167991.1	PFAM: MscS Mechanosensitive ion channel; KEGG: mca:MCA1632 mechanosensitive ion channel family protein
YP_003167992.1	KEGG: csa:Csal_0244 hypothetical protein
YP_003167993.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: gbe:GbCGDNIH1_0729 cardiolipin synthetase
YP_003167994.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_0085 ABC transporter related
YP_003167995.1	KEGG: sfu:Sfum_1461 hypothetical protein
YP_003167996.1	KEGG: reu:Reut_B4586 hypothetical protein
YP_003167997.1	TIGRFAM: phenylacetate-CoA ligase; KEGG: dar:Daro_3366 phenylacetate-CoA ligase
YP_003167998.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dar:Daro_3365 multi antimicrobial extrusion protein MatE
YP_003167999.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug
YP_003168000.1	KEGG: dar:Daro_2786 putative transmembrane protein
YP_003168001.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: gsu:GSU1928 sensor histidine kinase/response regulator
YP_003168002.1	KEGG: bam:Bamb_1597 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAC repeat-containing protein
YP_003168003.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A1019 diguanylate cyclase
YP_003168004.1	TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase
YP_003168005.1	KEGG: ngk:NGK_0744 Ag473
YP_003168006.1	PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: eba:ebA6563 predicted fructosamine kinase
YP_003168007.1	KEGG: pol:Bpro_2832 hypothetical protein
YP_003168008.1	KEGG: sru:SRU_1255 trk active potasium channel
YP_003168009.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1851 ATPase, E1-E2 type
YP_003168010.1	KEGG: rfr:Rfer_1782 hypothetical protein
YP_003168012.1	PFAM: DNA repair protein RadC; KEGG: eba:ebA840 DNA repair protein, RadC
YP_003168013.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_3146 response regulator receiver:transcriptional regulatory protein, C-terminal
YP_003168014.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3147 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_003168015.1	PFAM: MscS Mechanosensitive ion channel; KEGG: eba:ebA645 hypothetical protein
YP_003168016.1	PFAM: Fmu (Sun) domain protein; KEGG: dar:Daro_3159 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p
YP_003168017.1	KEGG: dar:Daro_3160 hypothetical protein
YP_003168018.1	KEGG: dar:Daro_3161 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein
YP_003168019.1	PFAM: SNARE associated Golgi protein; KEGG: eba:ebA3787 DedA protein (DSG-1 protein)
YP_003168020.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dar:Daro_3164 DNA mismatch repair protein MutL
YP_003168021.1	KEGG: dar:Daro_3171 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_003168022.1	PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: cvi:CV_2330 hypothetical protein
YP_003168023.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: azo:azo2825 molybdopterin biosynthesis protein
YP_003168024.1	KEGG: dar:Daro_1999 radical SAM:molybdenum cofactor synthesis C-terminal; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_003168025.1	PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: reh:H16_A3609 Zn-dependent protease with chaperone function (HtpX)
YP_003168026.1	TIGRFAM: ribosomal subunit interface protein; KEGG: mmw:Mmwyl1_3632 putative sigma 54 modulation protein/ribosomal protein S30EA
YP_003168027.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3867 transcriptional regulator, LysR family
YP_003168028.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: azo:azo1318 hypothetical protein
YP_003168029.1	KEGG: lch:Lcho_1706 hypothetical protein
YP_003168030.1	KEGG: maq:Maqu_2086 hypothetical protein
YP_003168031.1	PFAM: glycosyl transferase family 2; KEGG: csa:Csal_3221 glycosyl transferase, family 2
YP_003168033.1	PFAM: Radical SAM domain protein; KEGG: eba:ebA4360 conserved hypothetical protein, radical SAM family
YP_003168034.1	KEGG: ade:Adeh_3811 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase
YP_003168035.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; SNARE associated Golgi protein; KEGG: rfr:Rfer_1621 pyridine nucleotide-disulphide oxidoreductase dimerisation protein
YP_003168036.1	KEGG: lch:Lcho_1708 protein of unknown function DUF547
YP_003168037.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_5374 ABC transporter, permease protein
YP_003168038.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4763 heme acquisition transporter, membrane fusion protein HasE
YP_003168039.1	KEGG: spe:Spro_1596 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003168040.1	KEGG: pol:Bpro_3822 hypothetical protein
YP_003168044.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: tbd:Tbd_1268 Hpt sensor hybrid histidine kinase
YP_003168045.1	KEGG: mrd:Mrad2831_0218 hypothetical protein
YP_003168046.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bra:BRADO4672 conserved hypothetical protein; putative peroxidase related protein
YP_003168048.1	PFAM: dienelactone hydrolase; KEGG: dar:Daro_0181 twin-arginine translocation pathway signal
YP_003168049.1	KEGG: dar:Daro_3749 hypothetical protein
YP_003168050.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dar:Daro_3748 succinate semialdehyde dehydrogenase
YP_003168051.1	PFAM: NLP/P60 protein; KEGG: dar:Daro_3747 NLP/P60
YP_003168053.1	PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mag:amb3466 glutathione-regulated potassium-efflux system protein KefB
YP_003168054.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_1884 radical SAM
YP_003168055.1	PFAM: Silent information regulator protein Sir2; KEGG: eba:ebA2840 transcriptional regulator, Sir2 family
YP_003168056.1	KEGG: dar:Daro_1059 probable transmembrane protein
YP_003168057.1	PFAM: metallophosphoesterase; KEGG: bmu:Bmul_4433 metallophosphoesterase
YP_003168058.1	KEGG: mgm:Mmc1_3637 transposase, IS4 family protein
YP_003168059.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003168060.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003168061.1	PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein
YP_003168062.1	KEGG: npu:Npun_R5833 hypothetical protein
YP_003168063.1	KEGG: bvi:Bcep1808_3221 putative transmembrane protein
YP_003168064.1	KEGG: drm:Dred_2595 hypothetical protein
YP_003168065.1	KEGG: swi:Swit_2751 polysaccharide deacetylase
YP_003168066.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pen:PSEEN0710 CDP-alcohol phosphatidyltransferase
YP_003168067.1	PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_6196 hypothetical protein
YP_003168068.1	PFAM: Dual specificity protein phosphatase; KEGG: pau:PA14_31730 putative dual specificity phosphatase
YP_003168069.1	PFAM: phosphatidate cytidylyltransferase; KEGG: sml:Smlt4247 putative transmembrane phosphatidate cytidylyltransferase
YP_003168070.1	KEGG: mxa:MXAN_3853 hypothetical protein
YP_003168071.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dar:Daro_1757 tRNA/rRNA methyltransferase (SpoU)
YP_003168072.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_003168073.1	KEGG: dar:Daro_1755 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19
YP_003168074.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_003168075.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_003168076.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: dar:Daro_1751 outer membrane chaperone Skp (OmpH)
YP_003168077.1	TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dar:Daro_1750 surface antigen (D15):surface antigen variable number
YP_003168078.1	TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: dar:Daro_1749 peptidase M50, putative membrane-associated zinc metallopeptidase
YP_003168079.1	KEGG: dar:Daro_1748 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein
YP_003168080.1	PFAM: phosphatidate cytidylyltransferase; KEGG: azo:azo1904 putative phosphatidate cytidylyltransferase
YP_003168081.1	KEGG: dar:Daro_1746 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_003168082.1	PFAM: ribosome recycling factor; KEGG: azo:azo1906 Frr protein
YP_003168083.1	Catalyzes the phosphorylation of UMP to UDP
YP_003168084.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_003168085.1	PFAM: ribosomal protein S2; KEGG: azo:azo1909 30S ribosomal protein S2
YP_003168086.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dar:Daro_1740 methionine aminopeptidase
YP_003168087.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_003168090.1	KEGG: net:Neut_0481 hypothetical protein
YP_003168091.1	KEGG: neu:NE1634 hypothetical protein
YP_003168092.1	PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20
YP_003168093.1	PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3523 permease of the major facilitator superfamily
YP_003168094.1	KEGG: mag:amb3522 ABC-type uncharacterized transport system, periplasmic component
YP_003168095.1	PFAM: formyl transferase domain protein; KEGG: mag:amb3521 methionyl-tRNA formyltransferase
YP_003168096.1	KEGG: dar:Daro_1942 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein
YP_003168097.1	KEGG: dar:Daro_2751 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_003168099.1	KEGG: azo:azo1420 hypothetical protein
YP_003168100.1	PFAM: extracellular solute-binding protein family 3; KEGG: sil:SPO2658 glutamate/aspartate ABC transporter, periplasmic substrate-binding protein
YP_003168101.1	KEGG: dar:Daro_1288 propable PolB
YP_003168102.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_003168103.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dar:Daro_1286 ADP-glyceromanno-heptose 6-epimerase precursor
YP_003168104.1	TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dar:Daro_1285 D-alpha,beta-D-heptose 7-phosphate 1-kinase
YP_003168105.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_1283 hypothetical protein
YP_003168106.1	KEGG: eba:ebB29 hypothetical protein
YP_003168107.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_003168108.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_003168109.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation
YP_003168110.1	PFAM: Prephenate dehydrogenase; KEGG: dar:Daro_1234 prephenate dehydrogenase
YP_003168111.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_003168112.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dar:Daro_1232 prephenate dehydratase
YP_003168113.1	negatively supercoils closed circular double-stranded DNA
YP_003168115.1	KEGG: rrs:RoseRS_2583 tetratricopeptide TPR_2 repeat protein
YP_003168116.1	KEGG: cch:Cag_0872 hypothetical protein
YP_003168117.1	KEGG: mpt:Mpe_A1029 hypothetical protein
YP_003168118.1	KEGG: reu:Reut_A2151 hypothetical protein
YP_003168119.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_003168120.1	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_003168121.1	KEGG: dar:Daro_2976 hypothetical protein
YP_003168122.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dar:Daro_2977 HflC
YP_003168123.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dar:Daro_2978 HflK
YP_003168124.1	TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dar:Daro_2979 GTP-binding protein, HSR1-related
YP_003168125.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: azo:azo0932 RNA-binding regulatory protein
YP_003168126.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_2396 hypothetical protein
YP_003168127.1	KEGG: eba:ebA7214 hypothetical protein, possible molybdopterin biosynthesis protein MoeY
YP_003168128.1	PFAM: beta-lactamase domain protein; KEGG: mbn:Mboo_1287 beta-lactamase domain protein
YP_003168130.1	PFAM: Glycosyltransferase 28 domain; KEGG: mbb:BCG_2983c putative glycosyl transferase
YP_003168131.1	PFAM: protein of unknown function DUF1555; KEGG: ter:Tery_4367 hypothetical protein
YP_003168132.1	KEGG: noc:Noc_1989 putative glycan acetyltransferase
YP_003168133.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: npu:Npun_F3369 methyltransferase type 12
YP_003168134.1	PFAM: small multidrug resistance protein; KEGG: xau:Xaut_3102 small multidrug resistance protein
YP_003168135.1	PFAM: small multidrug resistance protein; KEGG: bac:BamMC406_1481 small multidrug resistance protein
YP_003168137.1	PFAM: protein of unknown function DUF214; KEGG: nmu:Nmul_A0370 protein of unknown function DUF214
YP_003168138.1	PFAM: protein of unknown function DUF214; KEGG: neu:NE2242 DUF214
YP_003168139.1	PFAM: lipolytic protein G-D-S-L family; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L
YP_003168140.1	PFAM: plasmid stabilization system; KEGG: spe:Spro_4208 plasmid stabilization system
YP_003168141.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: oan:Oant_4547 prevent-host-death family protein
YP_003168142.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_003168143.1	KEGG: dar:Daro_3292 hypothetical protein
YP_003168144.1	PFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase
YP_003168145.1	TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: nmu:Nmul_A1060 branched-chain amino acid aminotransferase
YP_003168146.1	KEGG: dar:Daro_3295 hypothetical protein
YP_003168147.1	TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3296 lipopolysaccharide heptosyltransferase II
YP_003168148.1	KEGG: dar:Daro_3297 hypothetical protein
YP_003168149.1	PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_3298 esterase/lipase/thioesterase family active site
YP_003168150.1	PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dar:Daro_3299 phosphomannomutase
YP_003168151.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_3300 EAL
YP_003168153.1	PFAM: N-6 DNA methylase; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit
YP_003168154.1	KEGG: fps:FP0028 hypothetical protein
YP_003168155.1	PFAM: VWA containing CoxE family protein; KEGG: azo:azo1429 hypothetical protein
YP_003168156.1	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azo:azo1431 hypothetical protein
YP_003168158.1	PFAM: Domain of unknown function DUF1841; KEGG: dar:Daro_1153 hypothetical protein
YP_003168159.1	KEGG: dar:Daro_1154 hypothetical protein
YP_003168160.1	KEGG: bbr:BB3785 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein
YP_003168161.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_003168162.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dar:Daro_1159 electron transport complex, RnfABCDGE type, G subunit
YP_003168163.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dar:Daro_1160 electron transport complex, RnfABCDGE type, D subunit
YP_003168164.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_003168165.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_003168166.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dar:Daro_1163 electron transport complex, RnfABCDGE type, A subunit
YP_003168167.1	PFAM: dihydroorotate dehydrogenase; KEGG: dar:Daro_1164 dihydroorotate oxidase A
YP_003168168.1	KEGG: bja:bll7553 hypothetical protein
YP_003168169.1	KEGG: reu:Reut_A0931 probable signal peptide protein
YP_003168170.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_1964 ABC-type tungstate transport system, periplasmic component
YP_003168171.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR1420 putative ATP-binding ABC transporter protein
YP_003168172.1	TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: dar:Daro_2450 tRNA pseudouridine synthase B
YP_003168173.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_003168174.1	TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; Miro domain protein; KEGG: dar:Daro_2452 translation initiation factor IF-2
YP_003168175.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_003168176.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_003168177.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: azo:azo2110 pseudouridylate synthase
YP_003168178.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: dar:Daro_2456 condensin subunit ScpB
YP_003168179.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: dar:Daro_2457 condensin subunit ScpA
YP_003168180.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003168181.1	PFAM: peptidase M50; KEGG: dar:Daro_2460 peptidase M50
YP_003168182.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dar:Daro_2461 SUA5/YciO/YrdC/YwlC
YP_003168183.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dar:Daro_2462 PHP, C-terminal
YP_003168184.1	PFAM: Negative transcriptional regulator; KEGG: pau:PA14_09790 putative transcriptional regulator
YP_003168185.1	PFAM: putative RNA methylase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0172 methyltransferase type 11
YP_003168186.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sgl:SG1583 3-demethylubiquinone-9 3-methyltransferase
YP_003168187.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0544 periplasmic sensor signal transduction histidine kinase
YP_003168188.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0543 two component transcriptional regulator, winged helix family
YP_003168189.1	KEGG: ote:Oter_3778 hypothetical protein
YP_003168190.1	KEGG: dar:Daro_1800 hypothetical protein
YP_003168191.1	PFAM: protein of unknown function DUF583; KEGG: dar:Daro_1801 hypothetical protein
YP_003168192.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_1802 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_003168193.1	KEGG: dar:Daro_1803 hypothetical protein
YP_003168194.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_1804 two component, sigma54 specific, transcriptional regulator, Fis family
YP_003168196.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsh:Rsph17029_3908 dimethylmenaquinone methyltransferase
YP_003168197.1	PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03177 putative transferase protein
YP_003168198.1	KEGG: rso:RS03178 putative transferase protein
YP_003168199.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS03179 probable transcription regulator protein
YP_003168200.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_003168201.1	KEGG: glo:Glov_1119 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region
YP_003168202.1	KEGG: psa:PST_0577 hypothetical protein
YP_003168203.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003168204.1	PFAM: protein of unknown function DUF820; KEGG: nis:NIS_1854 hypothetical protein
YP_003168205.1	PFAM: SEC-C motif domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: gur:Gura_1863 sec-C motif domain protein
YP_003168206.1	KEGG: pna:Pnap_4385 hypothetical protein
YP_003168207.1	PFAM: SNARE associated Golgi protein; KEGG: abo:ABO_0173 hypothetical protein
YP_003168208.1	KEGG: bac:BamMC406_5515 hypothetical protein
YP_003168209.1	PFAM: glycoside hydrolase family 31; KEGG: blj:BLD_1316 alpha-glucosidase
YP_003168210.1	PFAM: NnrS family protein; KEGG: eba:ebA4619 conserved hypothetical protein, predicted NnrS family involved in response to NO
YP_003168211.1	PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1313 hypothetical protein
YP_003168212.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU0172 hypothetical protein
YP_003168213.1	PFAM: cytochrome c assembly protein; KEGG: dar:Daro_0641 cytochrome c assembly protein
YP_003168214.1	KEGG: dar:Daro_0642 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_003168215.1	PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_0643 lytic transglycosylase, catalytic
YP_003168216.1	TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: dar:Daro_0644 prolyl-tRNA synthetase, bacterial
YP_003168217.1	hydrolyzes diadenosine polyphosphate
YP_003168218.1	PFAM: Protein of unknown function CNP1-like; KEGG: dar:Daro_0646 putative lipoprotein
YP_003168219.1	KEGG: azo:azo2762 ubiquinone biosynthesis protein
YP_003168220.1	PFAM: OsmC family protein; KEGG: dar:Daro_0648 OsmC-like protein
YP_003168221.1	TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; Citrate transporter; KEGG: rfr:Rfer_3845 anaerobic C4-dicarboxylate membrane transporter family protein
YP_003168222.1	catalyzes the formation of fumarate from aspartate
YP_003168223.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B0889 sigma-24 (FecI)
YP_003168224.1	KEGG: amr:AM1_2247 hypothetical protein
YP_003168225.1	KEGG: reu:Reut_B5723 hypothetical protein
YP_003168226.1	PFAM: OmpA/MotB domain protein; KEGG: lch:Lcho_4062 OmpA/MotB domain protein
YP_003168227.1	SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3888 putative serine/threonine kinase
YP_003168228.1	PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat
YP_003168229.1	KEGG: dar:Daro_3600 TIR
YP_003168230.1	PFAM: ribosomal protein L13; KEGG: dar:Daro_0649 50S ribosomal protein L13
YP_003168231.1	PFAM: ribosomal protein S9; KEGG: dar:Daro_0650 SSU ribosomal protein S9P
YP_003168232.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_003168233.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_003168234.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bvi:Bcep1808_0749 acyl-CoA dehydrogenase domain protein
YP_003168236.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6153 transcriptional regulator, LysR family
YP_003168237.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: npu:Npun_F4088 glutathione-dependent formaldehyde-activating, GFA
YP_003168238.1	PFAM: class II aldolase/adducin family protein; KEGG: bch:Bcen2424_1340 hypothetical protein
YP_003168239.1	PFAM: regulatory protein TetR; KEGG: mpa:MAP0155 hypothetical protein
YP_003168242.1	PFAM: protein of unknown function DUF482; KEGG: noc:Noc_1715 protein of unknown function DUF482
YP_003168243.1	Catalyzes the conversion of citrate to isocitrate
YP_003168244.1	PFAM: peptidase M48 Ste24p; KEGG: ava:Ava_3197 Zn-dependent protease with chaperone function-like
YP_003168245.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2728 chemotaxis sensory transducer
YP_003168246.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: swo:Swol_1403 putative signal transduction protein
YP_003168247.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dar:Daro_1320 peptidoglycan-binding LysM:lytic transglycosylase, catalytic
YP_003168248.1	KEGG: dar:Daro_1319 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase
YP_003168249.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1318 binding-protein-dependent transport systems inner membrane component
YP_003168250.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1317 binding-protein-dependent transport systems inner membrane component
YP_003168251.1	PFAM: extracellular solute-binding protein family 5; KEGG: dar:Daro_1224 extracellular solute-binding protein, family 5
YP_003168252.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1935 enoyl-[acyl-carrier-protein] reductase [NADH]
YP_003168254.1	KEGG: pol:Bpro_2832 hypothetical protein
YP_003168255.1	PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1320 putative AraC-family transcriptional regulator
YP_003168256.1	PFAM: protein of unknown function DUF1330; KEGG: rpc:RPC_0334 protein of unknown function DUF1330
YP_003168257.1	PFAM: MT-A70 family protein; KEGG: ajs:Ajs_0426 MT-A70 family protein
YP_003168258.1	PFAM: Restriction endonuclease BglII; KEGG: ajs:Ajs_0427 hypothetical protein
YP_003168259.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_003168260.1	PFAM: Phosphoglycerate mutase; KEGG: dar:Daro_0151 phosphoglycerate/bisphosphoglycerate mutase
YP_003168261.1	TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dar:Daro_0537 tyrosine recombinase XerD subunit
YP_003168262.1	TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dar:Daro_0538 methylated-DNA-(protein)-cysteine S-methyltransferase
YP_003168263.1	KEGG: dar:Daro_1552 putative lipoprotein transmembrane
YP_003168264.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_003168265.1	KEGG: dar:Daro_0541 hypothetical protein
YP_003168266.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_003168267.1	PFAM: Rare lipoprotein B; KEGG: dar:Daro_0543 rare lipoprotein B
YP_003168268.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_003168269.1	KEGG: sml:Smlt0344 hypothetical protein
YP_003168270.1	KEGG: azo:azo0076 hypothetical protein
YP_003168271.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sml:Smlt2004 putative ECF-type RNA polymerase sigma factor
YP_003168272.1	PFAM: Sporulation domain protein; KEGG: wsu:WS1631 hypothetical protein
YP_003168273.1	KEGG: dar:Daro_0545 hypothetical protein
YP_003168274.1	PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: net:Neut_1176 fructose-1,6-bisphosphatase
YP_003168275.1	PFAM: protein of unknown function DUF1555; KEGG: cja:CJA_0864 PEP-Cterm putative exosortase interaction domain protein
YP_003168276.1	KEGG: gur:Gura_2760 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_003168277.1	TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gur:Gura_2761 cobalt ABC transporter, inner membrane subunit CbiQ
YP_003168278.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: gur:Gura_0780 cobalamin (vitamin B12) biosynthesis CbiM protein
YP_003168279.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; (Uracil-5)-methyltransferase; KEGG: dar:Daro_0851 23S rRNA (uracil-5-)-methyltransferase
YP_003168280.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dar:Daro_3764 cation efflux protein
YP_003168281.1	KEGG: dar:Daro_3870 SNF2-related:helicase, C-terminal:SWIM Zn-finger; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases
YP_003168282.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_003168283.1	PFAM: protein of unknown function DUF1255; KEGG: dar:Daro_3029 protein of unknown function DUF1255
YP_003168284.1	KEGG: dar:Daro_3030 hypothetical protein
YP_003168285.1	PFAM: argininosuccinate synthase; KEGG: tbd:Tbd_1849 argininosuccinate synthase
YP_003168286.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_003168287.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_003168288.1	PFAM: protein of unknown function DUF323; KEGG: ter:Tery_4351 serine/threonine protein kinase
YP_003168290.1	KEGG: ppd:Ppro_1855 protein of unknown function DUF1568
YP_003168291.1	KEGG: cch:Cag_1695 reverse transcriptase family protein
YP_003168292.1	PFAM: HRDC domain protein; KEGG: tde:TDE2267 HRDC domain protein
YP_003168293.1	PFAM: protein of unknown function DUF323; KEGG: ter:Tery_2415 protein of unknown function DUF323
YP_003168294.1	PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: scl:sce2278 hypothetical protein
YP_003168295.1	KEGG: rba:RB10221 conserved hypothetical protein-putative disease resistance protein
YP_003168296.1	KEGG: dar:Daro_1795 hypothetical protein
YP_003168297.1	PFAM: LmbE family protein; KEGG: pmy:Pmen_0596 LmbE family protein
YP_003168298.1	PFAM: Mig-14 family protein; KEGG: pmy:Pmen_0595 Mig-14 family protein
YP_003168299.1	PFAM: glycosyl transferase family 2; KEGG: eba:ebA3985 glycosyl transferase
YP_003168300.1	KEGG: abo:ABO_2293 hypothetical protein
YP_003168301.1	PFAM: protein of unknown function DUF82; KEGG: met:M446_3160 protein of unknown function DUF82
YP_003168302.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rme:Rmet_5363 NADH:flavin oxidoreductase/NADH oxidase
YP_003168303.1	PFAM: metallophosphoesterase; KEGG: lch:Lcho_1563 metallophosphoesterase
YP_003168304.1	KEGG: lch:Lcho_1564 hypothetical protein
YP_003168305.1	PFAM: protein of unknown function DUF1345; KEGG: pne:Pnec_1397 protein of unknown function DUF1345
YP_003168306.1	PFAM: protein of unknown function DUF323; KEGG: mms:mma_1908 hypothetical protein
YP_003168307.1	KEGG: smd:Smed_1144 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_003168309.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: hmo:HM1_0368 glycolate permease glca
YP_003168310.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dar:Daro_1763 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_003168311.1	PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5900 transcriptional regulator, GntR family
YP_003168313.1	KEGG: dar:Daro_1569 cytochrome c, class I
YP_003168314.1	PFAM: adenylosuccinate synthetase; KEGG: rha:RHA1_ro08616 adenylosuccinate synthetase
YP_003168315.1	KEGG: rha:RHA1_ro08617 hypothetical protein
YP_003168316.1	KEGG: rha:RHA1_ro08618 hypothetical protein
YP_003168317.1	KEGG: sat:SYN_00017 superfamily II DNA/RNA helicase, SNF2 family
YP_003168319.1	PFAM: histone family protein DNA-binding protein; KEGG: mms:mma_2667 integration host factor beta-subunit
YP_003168320.1	PFAM: SEC-C motif domain protein; KEGG: vei:Veis_2451 sec-C motif domain protein
YP_003168322.1	KEGG: dar:Daro_2726 hypothetical protein
YP_003168323.1	KEGG: cja:CJA_3648 hypothetical protein
YP_003168324.1	KEGG: vvy:VV0267 type I restriction-modification enzyme, specificity subunit
YP_003168325.1	PFAM: protein of unknown function DUF1016; KEGG: zmo:ZMO1931 hypothetical protein
YP_003168326.1	PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: nwi:Nwi_0269 N-6 DNA methylase
YP_003168327.1	PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: bvi:Bcep1808_0274 EcoEI R, C-terminal domain protein
YP_003168328.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003168329.1	PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1298 recombination factor protein RarA
YP_003168331.1	PFAM: protein of unknown function UPF0089; KEGG: rfr:Rfer_0505 protein of unknown function UPF0089
YP_003168332.1	KEGG: asa:ASA_2032 poly(hydroxyalcanoate) granule associated protein
YP_003168333.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo3618 glycine cleavage system transcriptional activator
YP_003168335.1	KEGG: azo:azo3771 probable thioesterase
YP_003168336.1	PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pol:Bpro_4152 putative signal-transduction protein with CBS domains
YP_003168337.1	KEGG: azo:azo2410 DNA polymerase III epsilon chain-like protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_003168338.1	PFAM: response regulator receiver; KEGG: azo:azo2411 transcriptional regulatory protein
YP_003168339.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase
YP_003168340.1	KEGG: azo:azo2413 hypothetical protein
YP_003168341.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_003168342.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dar:Daro_1615 mandelate racemase/muconate lactonizing enzyme
YP_003168343.1	PFAM: UvrD/REP helicase; KEGG: azo:azo0345 ATP-dependent DNA helicase
YP_003168344.1	PFAM: ABC-1 domain protein; KEGG: dar:Daro_1130 ABC-1
YP_003168345.1	KEGG: dar:Daro_1131 hypothetical protein
YP_003168346.1	KEGG: psb:Psyr_2639 hypothetical protein
YP_003168347.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmu:Bmul_5842 short-chain dehydrogenase/reductase SDR
YP_003168348.1	PFAM: conserved hypothetical protein; KEGG: pne:Pnec_0597 hypothetical protein
YP_003168349.1	KEGG: bmu:Bmul_5843 FAD dependent oxidoreductase
YP_003168350.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: cvi:CV_3229 hypothetical protein
YP_003168351.1	PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tbd:Tbd_0827 DNA polymerase III, epsilon subunit
YP_003168353.1	PFAM: cell wall hydrolase/autolysin; KEGG: dar:Daro_3049 cell wall hydrolase/autolysin
YP_003168354.1	PFAM: protein of unknown function UPF0079; KEGG: dar:Daro_3050 hypothetical protein
YP_003168355.1	TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: azo:azo1245 conserved hypothetical electron transport protein
YP_003168356.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: hch:HCH_03954 dehydrogenase
YP_003168357.1	PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein
YP_003168358.1	KEGG: bpt:Bpet3757 hypothetical protein
YP_003168359.1	PFAM: Integrase catalytic region; KEGG: bpt:Bpet3758 putative transposase
YP_003168360.1	SMART: AAA ATPase; KEGG: bxe:Bxe_C0709 putative ATPase
YP_003168362.1	PFAM: von Willebrand factor type A; KEGG: dsh:Dshi_1335 hypothetical protein
YP_003168363.1	KEGG: eba:p2A279 transposase
YP_003168364.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003168365.1	KEGG: psa:PST_0577 hypothetical protein
YP_003168367.1	KEGG: ppr:PBPRB1996 hypothetical protein
YP_003168368.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003168370.1	KEGG: pin:Ping_1500 hypothetical protein DUF1555
YP_003168371.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: cti:RALTA_p0157 retron-type reverse transcriptase, RNA-directed DNA polymerase
YP_003168372.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: npu:Npun_R0666 TPR repeat-containing protein
YP_003168373.1	PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein
YP_003168374.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_1006 AMP-dependent synthetase and ligase
YP_003168375.1	KEGG: chu:CHU_2450 hydrolase with alpha/beta fold
YP_003168376.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vha:VIBHAR_03061 hypothetical protein
YP_003168377.1	KEGG: npu:Npun_R4287 hypothetical protein
YP_003168378.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sus:Acid_5150 hemerythrin-like metal-binding protein
YP_003168379.1	PFAM: Dual specificity protein phosphatase; KEGG: psa:PST_2098 phosphatase family protein, putative
YP_003168380.1	PFAM: protein of unknown function UPF0153; KEGG: cvi:CV_2850 probable ferredoxin
YP_003168381.1	KEGG: mca:MCA2831 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_003168382.1	PFAM: transposase IS4 family protein; KEGG: amt:Amet_1537 hypothetical protein
YP_003168383.1	PFAM: amino acid permease-associated region; KEGG: mca:MCA2830 amino acid permease family protein
YP_003168384.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mar:MAE_50030 poly(3-hydroxyalkanoate) synthase
YP_003168385.1	KEGG: mar:MAE_50040 putative poly(3-hydroxyalkanoate) synthase component
YP_003168386.1	PFAM: MaoC domain protein dehydratase; KEGG: reh:H16_A1288 acyl dehydratase
YP_003168387.1	PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro03006 hypothetical protein
YP_003168388.1	KEGG: cvi:CV_2088 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase
YP_003168389.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1338 short-chain dehydrogenase family protein
YP_003168390.1	PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein
YP_003168391.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_0414 AMP-dependent synthetase and ligase
YP_003168393.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo0790 enoyl-CoA hydratase
YP_003168394.1	TIGRFAM: esterase, PHB depolymerase family; KEGG: rpa:RPA0565 putative polyhydroxybutyrate depolymerase
YP_003168395.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_003168396.1	catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate
YP_003168397.1	KEGG: lic:LIC10946 hypothetical protein
YP_003168398.1	KEGG: dar:Daro_1894 hypothetical protein
YP_003168399.1	PFAM: protein of unknown function DUF182; KEGG: dar:Daro_1893 protein of unknown function DUF182
YP_003168400.1	PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dar:Daro_1892 twin-arginine translocation pathway signal
YP_003168401.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dar:Daro_1891 ferredoxin:(2Fe-2S)-binding
YP_003168402.1	PFAM: protein of unknown function UPF0153; KEGG: dar:Daro_1132 hypothetical protein
YP_003168403.1	PFAM: aldo/keto reductase; KEGG: bbr:BB2876 hypothetical protein
YP_003168404.1	PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0029 major facilitator superfamily MFS_1
YP_003168405.1	PFAM: intradiol ring-cleavage dioxygenase; KEGG: pmy:Pmen_0474 intradiol ring-cleavage dioxygenase
YP_003168407.1	KEGG: gur:Gura_2107 hypothetical protein
YP_003168408.1	KEGG: nmu:Nmul_A0869 proline-rich region
YP_003168409.1	TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: saq:Sare_3123 transcriptional regulator, LysR family
YP_003168410.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rsa:RSal33209_2927 transporter, LysE family
YP_003168411.1	KEGG: swi:Swit_4655 hypothetical protein
YP_003168412.1	PFAM: thiamineS protein; KEGG: reh:H16_B2249 hypothetical protein
YP_003168413.1	KEGG: reu:Reut_B4987 glycosyl hydrolase, BNR repeat
YP_003168414.1	KEGG: cch:Cag_1796 ankyrin
YP_003168415.1	PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: eba:ebA6332 hypothetical protein
YP_003168416.1	KEGG: cph:Cpha266_0939 DNA methylase N-4/N-6 domain protein
YP_003168417.1	KEGG: xcb:XC_0495 two-component system sensor protein
YP_003168418.1	KEGG: dar:Daro_4138 hypothetical protein
YP_003168419.1	PFAM: putative exonuclease RdgC; KEGG: azo:azo0082 recombination associated protein
YP_003168420.1	KEGG: rpd:RPD_3130 transposase and inactivated derivatives
YP_003168421.1	KEGG: lch:Lcho_0225 hypothetical protein
YP_003168422.1	KEGG: sat:SYN_01817 hypothetical cytosolic protein
YP_003168423.1	KEGG: lch:Lcho_0223 hypothetical protein
YP_003168424.1	PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820
YP_003168425.1	KEGG: sat:SYN_01819 hypothetical cytosolic protein
YP_003168427.1	KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003168428.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0460 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003168429.1	KEGG: dar:Daro_0241 periplasmic binding protein-related protein
YP_003168430.1	KEGG: dar:Daro_2722 aminotransferase, class V
YP_003168431.1	PFAM: protein of unknown function DUF808; KEGG: dar:Daro_1869 protein of unknown function DUF808
YP_003168432.1	PFAM: Glutathione S-transferase domain; KEGG: scl:sce3993 hypothetical protein
YP_003168433.1	PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU2396 hypothetical protein
YP_003168434.1	KEGG: ape:APE_0276.1 hypothetical protein
YP_003168436.1	PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: eba:ebB182 conserved hypothetical protein, predicted nucleic acid-binding protein,contains PINc domain
YP_003168437.1	KEGG: eba:ebD91 hypothetical protein
YP_003168438.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Hemolysin-type calcium-binding region; Proprotein convertase P; KEGG: ana:all0364 similar to prohormone convertase
YP_003168439.1	PFAM: transposase IS66; KEGG: mgm:Mmc1_3392 transposase IS66
YP_003168440.1	PFAM: glycosyl transferase group 1; KEGG: cvi:CV_4021 probable glycosyl transferase
YP_003168441.1	PFAM: Heparinase II/III family protein; KEGG: pau:PA14_23430 putative heparinase
YP_003168442.1	PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RS02345 probable transmembrane protein
YP_003168443.1	KEGG: vha:VIBHAR_00695 hypothetical protein
YP_003168444.1	KEGG: gme:Gmet_1500 hypothetical protein
YP_003168445.1	PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0250 glycosyl transferase, group 1
YP_003168446.1	PFAM: O-antigen polymerase; KEGG: cti:RALTA_A0506 putative lipopolysaccharide biosynthesis protein
YP_003168447.1	PFAM: virulence factor MVIN family protein; KEGG: mag:amb4409 uncharacterized membrane protein, putative virulence factor
YP_003168450.1	PFAM: FAD dependent oxidoreductase; KEGG: aba:Acid345_3314 FAD dependent oxidoreductase
YP_003168451.1	PFAM: Protein of unknown function DUF1626; KEGG: rrs:RoseRS_0534 protein of unknown function DUF1626
YP_003168452.1	TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2705 squalene/phytoene synthase
YP_003168453.1	TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2706 squalene/phytoene synthase
YP_003168454.1	TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: dar:Daro_2707 amine oxidase
YP_003168455.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2713 ABC transporter related
YP_003168456.1	PFAM: lipolytic protein G-D-S-L family; KEGG: dar:Daro_2714 lipolytic enzyme, G-D-S-L
YP_003168457.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_003168458.1	KEGG: azo:azo1663 putative tellurite resistance protein
YP_003168459.1	PFAM: OsmC family protein; KEGG: dar:Daro_2717 OsmC-like protein
YP_003168460.1	PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dar:Daro_2718 GCN5-related N-acetyltransferase:CoA-binding
YP_003168461.1	KEGG: dar:Daro_2719 hypothetical protein
YP_003168462.1	KEGG: mpt:Mpe_A3630 hypothetical protein
YP_003168463.1	KEGG: dar:Daro_2727 AAA ATPase, central region:Clp, N terminal; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_003168464.1	PFAM: molybdopterin biosynthesis MoaE protein; KEGG: dar:Daro_2729 molybdopterin synthase subunit MoaE
YP_003168465.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: dar:Daro_1784 molybdopterin synthase subunit MoaD
YP_003168466.1	TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: reh:H16_A2264 molybdopterin biosynthesis protein
YP_003168467.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: dar:Daro_1782 molybdopterin-guanine dinucleotide biosynthesis MobB region
YP_003168468.1	KEGG: eba:ebA6677 hypothetical protein
YP_003168469.1	SMART: helicase c2; KEGG: dar:Daro_1779 helicase c2:DEAD/DEAH box helicase, N-terminal
YP_003168470.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: dar:Daro_2442 peptidase S1 and S6, chymotrypsin/Hap
YP_003168471.1	PFAM: Sel1 domain protein repeat-containing protein; Lytic transglycosylase catalytic; KEGG: dar:Daro_2441 lytic transglycosylase, catalytic
YP_003168472.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase
YP_003168473.1	TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_2440 UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding
YP_003168474.1	KEGG: dar:Daro_2439 TPR repeat:tetratricopeptide TPR_3:tetratricopeptide TPR_4; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_003168475.1	KEGG: dar:Daro_2438 helix-turn-helix, fis-type; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase
YP_003168476.1	TIGRFAM: PEP-CTERM system histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2437 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003168477.1	KEGG: dar:Daro_2436 sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase
YP_003168478.1	KEGG: rfr:Rfer_0701 hypothetical protein
YP_003168479.1	KEGG: azo:azo3680 hypothetical protein
YP_003168480.1	PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: azo:azo3681 hypothetical protein
YP_003168481.1	PFAM: beta-lactamase domain protein; KEGG: bph:Bphy_4051 beta-lactamase domain protein
YP_003168482.1	PFAM: protein of unknown function DUF107; KEGG: dar:Daro_0261 protein of unknown function DUF107
YP_003168483.1	PFAM: band 7 protein; KEGG: azo:azo2269 conserved hypothetical band 7 family protein
YP_003168485.1	KEGG: azo:azo1076 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase
YP_003168486.1	KEGG: cvi:CV_0745 hypothetical protein
YP_003168487.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rme:Rmet_4592 hypothetical protein
YP_003168488.1	PFAM: formyl transferase domain protein; KEGG: bcm:Bcenmc03_1885 formyl transferase domain protein
YP_003168489.1	PFAM: glycosyl transferase family 2; KEGG: bte:BTH_I2192 glycosyl transferase, group 2 family protein
YP_003168490.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cvi:CV_0750 probable glutamine-scyllo-inositol transaminase
YP_003168491.1	KEGG: bmu:Bmul_1415 small multidrug resistance protein
YP_003168492.1	PFAM: glycosyl transferase family 39; KEGG: cvi:CV_0752 hypothetical protein
YP_003168493.1	KEGG: fma:FMG_0197 hypothetical protein
YP_003168494.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lch:Lcho_1866 two component transcriptional regulator, winged helix family
YP_003168495.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lch:Lcho_1867 histidine kinase
YP_003168496.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dar:Daro_2379 hypothetical protein
YP_003168497.1	PFAM: histone deacetylase superfamily; KEGG: azo:azo1601 histone deacetylase family protein
YP_003168498.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_003168499.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dar:Daro_2906 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_003168500.1	PFAM: BolA family protein; KEGG: eba:ebD120 stress-induced morphogen BolA
YP_003168501.1	PFAM: YCII-related; KEGG: nmu:Nmul_A2112 YCII-related
YP_003168502.1	TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: nmu:Nmul_A2111 intracellular septation protein A
YP_003168504.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gsu:GSU3088 YbaK/EbsC protein
YP_003168505.1	PFAM: type IV pilus assembly PilZ; KEGG: lch:Lcho_1910 type IV pilus assembly PilZ
YP_003168506.1	KEGG: psa:PST_0269 hypothetical protein
YP_003168507.1	PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xcb:XC_2925 hypothetical protein
YP_003168508.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_003168509.1	KEGG: bac:BamMC406_1460 putative ParB-like nuclease
YP_003168510.1	KEGG: noc:Noc_2650 hypothetical protein
YP_003168511.1	KEGG: sdn:Sden_1576 hypothetical protein
YP_003168512.1	This protein performs the mismatch recognition step during the DNA repair process
YP_003168513.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor
YP_003168514.1	PFAM: Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; KEGG: aba:Acid345_3029 small GTP-binding protein
YP_003168515.1	KEGG: dar:Daro_2349 peptidylprolyl isomerase, FKBP-type
YP_003168516.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_2362 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_003168517.1	PFAM: Septum formation initiator; KEGG: dar:Daro_2363 cell division protein FtsB
YP_003168518.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_003168519.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_003168520.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_003168521.1	PFAM: isochorismatase hydrolase; KEGG: pmy:Pmen_3537 isochorismatase hydrolase
YP_003168522.1	PFAM: transposase IS4 family protein; KEGG: dge:Dgeo_3112 transposase IS4 family protein
YP_003168523.1	PFAM: Ankyrin; KEGG: tva:TVAG_099270 ankyrin repeat protein, putative Pfam: VAR1 Ank PROSITE: ANK_REPEAT ANK_REP_REGION
YP_003168524.1	PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA4749 long chain fatty-acid CoA ligase
YP_003168525.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_0035 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain
YP_003168526.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dar:Daro_2997 thioredoxin
YP_003168527.1	KEGG: azo:azo1029 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein
YP_003168528.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_003168529.1	KEGG: dar:Daro_3000 hypothetical protein
YP_003168530.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: azo:azo1518 oligoribonuclease
YP_003168531.1	PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_3002 peptidase M48, Ste24p
YP_003168532.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: xcv:XCV2428 pterin-4-alpha-carbinolamine dehydratase
YP_003168533.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_003168534.1	TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: maq:Maqu_3414 putative polyhydroxyalkanoic acid system protein
YP_003168535.1	PFAM: acyl-coA-binding protein ACBP; KEGG: mpt:Mpe_A3085 putative acyl-CoA-binding protein
YP_003168536.1	TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: asa:ASA_2036 hypothetical protein
YP_003168537.1	KEGG: asa:ASA_2035 hypothetical protein
YP_003168538.1	PFAM: regulatory protein TetR; KEGG: bph:Bphy_2030 transcriptional regulator, TetR family
YP_003168539.1	PFAM: Patatin; KEGG: asa:ASA_2033 phospholipase, patatin family
YP_003168540.1	TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: asa:ASA_2032 poly(hydroxyalcanoate) granule associated protein
YP_003168541.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: mpt:Mpe_A0491 short chain dehydrogenase
YP_003168542.1	KEGG: mms:mma_3179 activator of osmoprotectant transporter ProP
YP_003168543.1	KEGG: dar:Daro_3460 hypothetical protein
YP_003168544.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: eba:ebA2945 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_003168545.1	PFAM: ribosomal protein S15; KEGG: tbd:Tbd_0694 SSU ribosomal protein S15P
YP_003168546.1	KEGG: dar:Daro_2448 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein
YP_003168547.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dar:Daro_2447 Zn-finger, prokaryotic DksA/TraR C4 type
YP_003168548.1	PFAM: helix-turn-helix domain protein; KEGG: maq:Maqu_2492 hypothetical protein
YP_003168549.1	KEGG: dar:Daro_1931 hypothetical protein
YP_003168550.1	PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dar:Daro_1932 transcriptional regulator, GntR family
YP_003168551.1	SMART: AAA ATPase; KEGG: plu:plu2216 hypothetical protein
YP_003168552.1	KEGG: rru:Rru_A0987 glutathione S-transferase-like
YP_003168554.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0325 probable transcription regulator protein
YP_003168555.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related
YP_003168556.1	PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: pnu:Pnuc_1653 membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG)
YP_003168557.1	PFAM: RDD domain containing protein; KEGG: hch:HCH_00261 predicted membrane protein/domain
YP_003168558.1	KEGG: dar:Daro_0167 putative transmembrane protein
YP_003168560.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_1662 diguanylate cyclase with PAS/PAC sensor
YP_003168561.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: pna:Pnap_3905 prevent-host-death family protein
YP_003168562.1	TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: pna:Pnap_3904 addiction module toxin, Txe/YoeB family
YP_003168563.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cvi:CV_2839 probable transporter transmembrane protein
YP_003168564.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: hch:HCH_03463 Lhr-like helicase
YP_003168565.1	KEGG: pna:Pnap_4278 methyl-accepting chemotaxis protein
YP_003168566.1	PFAM: PglZ domain protein; KEGG: pna:Pnap_4279 PglZ domain
YP_003168567.1	KEGG: pna:Pnap_4280 putative phage resistance protein
YP_003168569.1	KEGG: npu:Npun_F0670 hypothetical protein
YP_003168570.1	KEGG: psp:PSPPH_1029 hypothetical protein
YP_003168571.1	PFAM: SMC domain protein; KEGG: psp:PSPPH_1028 ATP binding protein
YP_003168572.1	KEGG: pna:Pnap_4283 hypothetical protein
YP_003168573.1	PFAM: RNA polymerase alpha subunit domain protein; NERD domain protein; SMART: serine/threonine protein kinase; KEGG: pna:Pnap_4285 protein kinase
YP_003168575.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003168577.1	KEGG: gka:GK1917 hypothetical protein
YP_003168578.1	PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase
YP_003168579.1	KEGG: chy:CHY_1250 ISChy3, orf1
YP_003168580.1	KEGG: sus:Acid_6122 hypothetical protein
YP_003168581.1	PFAM: protein of unknown function DUF58; KEGG: pae:PA4323 hypothetical protein
YP_003168582.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3320 ATPase associated with various cellular activities, AAA_3
YP_003168583.1	KEGG: pfl:PFL_4792 hypothetical protein
YP_003168584.1	KEGG: pfo:PflO1_4441 hypothetical protein
YP_003168585.1	PFAM: protein of unknown function DUF95 transmembrane; KEGG: pst:PSPTO_4318 integral membrane protein
YP_003168586.1	PFAM: protein of unknown function DUF330; KEGG: rme:Rmet_4087 protein of unknown function DUF330
YP_003168587.1	PFAM: Mammalian cell entry related domain protein; KEGG: ppd:Ppro_0403 mammalian cell entry related domain protein
YP_003168588.1	PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0402 paraquat-inducible protein A
YP_003168589.1	PFAM: Paraquat-inducible protein A; KEGG: bph:Bphy_0650 integral membrane protein, PqiA family
YP_003168590.1	PFAM: Patatin; KEGG: sfu:Sfum_1455 patatin
YP_003168591.1	KEGG: sus:Acid_3454 tetratricopeptide TPR_4
YP_003168592.1	PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel
YP_003168593.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: net:Neut_0698 UTP-glucose-1-phosphate uridylyltransferase
YP_003168594.1	KEGG: tbd:Tbd_0072 transcriptional regulator, AsnC family
YP_003168595.1	KEGG: dar:Daro_3268 transcriptional regulator, AsnC family
YP_003168596.1	SMART: regulatory protein AsnC/Lrp family; KEGG: dar:Daro_3269 transcriptional regulator, AsnC family
YP_003168597.1	PFAM: cytochrome d1 heme region; KEGG: dar:Daro_3270 cytochrome d1, heme region
YP_003168598.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1561 thioredoxin
YP_003168599.1	KEGG: dar:Daro_1562 putative ABC-2 type transport system permease protein
YP_003168600.1	KEGG: mag:amb3077 hypothetical protein
YP_003168601.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1564 ABC transporter related
YP_003168602.1	TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1565 ferredoxin-type protein, NapH/MauN family
YP_003168603.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1566 4Fe-4S ferredoxin, iron-sulfur binding
YP_003168604.1	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: dar:Daro_1567 periplasmic copper-binding
YP_003168605.1	KEGG: dar:Daro_1568 hypothetical protein
YP_003168606.1	PFAM: cytochrome c class I; KEGG: dar:Daro_1569 cytochrome c, class I
YP_003168607.1	PFAM: cytochrome c class I; KEGG: dar:Daro_1570 cytochrome c, class I
YP_003168608.1	PFAM: cytochrome c oxidase subunit II; KEGG: dar:Daro_1575 cytochrome c oxidase, subunit II
YP_003168609.1	KEGG: dar:Daro_1576 hypothetical protein
YP_003168610.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: dar:Daro_1577 electron transport protein SCO1/SenC
YP_003168611.1	PFAM: protein of unknown function DUF461; KEGG: dar:Daro_1578 protein of unknown function DUF461
YP_003168612.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: eba:ebA1468 thioredoxin
YP_003168613.1	KEGG: ech:ECH_1079 putative cytochrome c oxidase, subunit I
YP_003168614.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dar:Daro_3198 transcriptional regulator, Crp/Fnr family
YP_003168615.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase
YP_003168616.1	KEGG: dar:Daro_0423 D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C
YP_003168617.1	KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3
YP_003168618.1	PFAM: regulatory protein ArsR; KEGG: dar:Daro_0401 regulatory protein, ArsR
YP_003168619.1	PFAM: amidohydrolase 2; KEGG: azo:azo0149 putative mannonate dehydratase
YP_003168620.1	PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: dar:Daro_0405 phospholipid/glycerol acyltransferase:major facilitator superfamily MFS_1
YP_003168621.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: dar:Daro_0413 4-hydroxybenzoate octaprenyltransferase
YP_003168622.1	KEGG: dar:Daro_0414 hypothetical protein
YP_003168623.1	KEGG: dar:Daro_0419 hypothetical protein
YP_003168624.1	KEGG: ava:Ava_3043 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003168625.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: eba:ebA125 two-component response regulator
YP_003168626.1	PFAM: response regulator receiver; KEGG: dar:Daro_1139 response regulator receiver
YP_003168627.1	PFAM: chemotaxis sensory transducer; KEGG: azo:azo0410 putative methyl-accepting chemotaxis protein
YP_003168628.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: azo:azo0409 putative STAS domain protein
YP_003168629.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: azo:azo0408 putative chemotaxis protein histidine kinase
YP_003168630.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer
YP_003168631.1	PFAM: CheW domain protein; KEGG: dar:Daro_1144 CheW-like protein
YP_003168632.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer
YP_003168633.1	PFAM: CheW domain protein; KEGG: dar:Daro_1144 CheW-like protein
YP_003168634.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer
YP_003168635.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dac:Daci_3084 methyl-accepting chemotaxis sensory transducer
YP_003168636.1	SMART: PAS domain containing protein; KEGG: gsu:GSU2789 sensory box histidine kinase
YP_003168637.1	stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: dar:Daro_1145 CheD
YP_003168638.1	PFAM: MCP methyltransferase CheR-type; KEGG: azo:azo0403 probable chemotaxis protein methyltransferase
YP_003168639.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_1149 putative signal transduction protein
YP_003168640.1	PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: azo:azo0545 putative methyl-accepting chemotaxis protein
YP_003168641.1	KEGG: dar:Daro_0356 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases
YP_003168642.1	TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dar:Daro_0355 endoribonuclease L-PSP
YP_003168643.1	KEGG: dar:Daro_0354 TPR repeat
YP_003168644.1	PFAM: Sporulation domain protein; KEGG: dar:Daro_0352 sporulation related
YP_003168645.1	KEGG: dar:Daro_0351 hypothetical protein
YP_003168646.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_003168647.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dar:Daro_1549 3-hydroxyacyl-CoA dehydrogenase
YP_003168648.1	PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dar:Daro_1548 membrane protein involved in aromatic hydrocarbon degradation
YP_003168649.1	PFAM: thioesterase superfamily protein; KEGG: dar:Daro_0349 thioesterase superfamily
YP_003168650.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dar:Daro_1547 3-hydroxyacyl-CoA dehydrogenase
YP_003168651.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_003168652.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_003168653.1	PFAM: regulatory protein TetR; KEGG: dar:Daro_1543 transcriptional regulator, TetR family
YP_003168654.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0348 ABC transporter, transmembrane region:ABC transporter related
YP_003168655.1	PFAM: ribosomal protein L17; KEGG: dar:Daro_0346 LSU ribosomal protein L17P
YP_003168656.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_003168657.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_003168658.1	PFAM: ribosomal protein S11; KEGG: azo:azo3393 30S ribosomal protein S11
YP_003168659.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_003168660.1	TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: mfa:Mfla_0300 translation initiation factor IF-1
YP_003168661.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_003168662.1	late assembly protein
YP_003168663.1	PFAM: ribosomal protein L30; KEGG: eba:ebC4 50S ribosomal protein L30
YP_003168664.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_003168665.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dar:Daro_0335 50S ribosomal protein L18
YP_003168666.1	PFAM: ribosomal protein L6; KEGG: azo:azo3402 50S ribosomal protein L6
YP_003168667.1	PFAM: ribosomal protein S8; KEGG: dar:Daro_0333 30S ribosomal protein S8
YP_003168668.1	PFAM: ribosomal protein S14; KEGG: dar:Daro_0332 SSU ribosomal protein S14P
YP_003168669.1	PFAM: ribosomal protein L5; KEGG: dar:Daro_0331 50S ribosomal protein L5
YP_003168670.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_003168671.1	TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: mfa:Mfla_0289 50S ribosomal protein L14
YP_003168672.1	PFAM: ribosomal protein S17; KEGG: dar:Daro_0328 SSU ribosomal protein S17P
YP_003168673.1	one of the stabilizing components for the large ribosomal subunit
YP_003168674.1	PFAM: ribosomal protein L16; KEGG: dar:Daro_0326 50S ribosomal protein L16
YP_003168675.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_003168676.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_003168677.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_003168678.1	PFAM: ribosomal protein L2; KEGG: bxe:Bxe_A0317 50S ribosomal protein L2
YP_003168679.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_003168680.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_003168681.1	PFAM: ribosomal protein L3; KEGG: dar:Daro_0319 50S ribosomal protein L3
YP_003168682.1	PFAM: ribosomal protein S10; KEGG: lch:Lcho_3865 ribosomal protein S10
YP_003168683.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: azo:azo3431 elongation factor Tu
YP_003168684.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dar:Daro_0316 translation elongation factor 2 (EF-2/EF-G)
YP_003168685.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_003168686.1	TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dar:Daro_0314 30S ribosomal protein S12
YP_003168687.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_003168688.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_003168689.1	TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: eba:ebB123 50S ribosomal protein L7/L12
YP_003168690.1	PFAM: ribosomal protein L10; KEGG: eba:ebA3816 50S ribosomal protein L10
YP_003168691.1	PFAM: ribosomal protein L1; KEGG: dar:Daro_0309 LSU ribosomal protein L1P
YP_003168692.1	PFAM: ribosomal protein L11; KEGG: bpt:Bpet4969 50S ribosomal protein L11
YP_003168693.1	Modulates Rho-dependent transcription termination
YP_003168694.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_003168695.1	TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: azo:azo3431 elongation factor Tu
YP_003168696.1	PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_0268 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_003168697.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_003168698.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_1371 GCN5-related N-acetyltransferase
YP_003168699.1	PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein
YP_003168700.1	PFAM: protein of unknown function DUF323; KEGG: lch:Lcho_3768 protein of unknown function DUF323
YP_003168701.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003168702.1	KEGG: psa:PST_0578 conserved possible transposase
YP_003168703.1	KEGG: psa:PST_0577 hypothetical protein
YP_003168705.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: azo:azo0107 hypothetical protein
YP_003168706.1	PFAM: cyclase/dehydrase; KEGG: noc:Noc_2987 hypothetical protein
YP_003168707.1	KEGG: nmu:Nmul_A1787 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003168708.1	PFAM: protein of unknown function DUF1486; KEGG: dps:DP0868 hypothetical protein
YP_003168709.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bcm:Bcenmc03_4942 lysine exporter protein (LysE/YggA)
YP_003168710.1	KEGG: pol:Bpro_3355 cold-shock DNA-binding protein family
YP_003168711.1	KEGG: met:M446_1545 TRAP-type uncharacterized transport system periplasmic component-like protein
YP_003168713.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rfr:Rfer_2543 hypothetical protein
YP_003168717.1	KEGG: cpb:Cphamn1_0882 hypothetical protein
YP_003168720.1	PFAM: SEC-C motif domain protein; KEGG: sfr:Sfri_0915 sec-C motif domain protein
YP_003168722.1	PFAM: Methyltransferase type 11; KEGG: hch:HCH_03658 SAM-dependent methyltransferase
YP_003168723.1	KEGG: dsy:DSY1781 hypothetical protein
YP_003168724.1	KEGG: sml:Smlt4594 hypothetical protein
YP_003168725.1	KEGG: bmu:Bmul_6248 hypothetical protein
YP_003168726.1	KEGG: lch:Lcho_4146 hypothetical protein
YP_003168727.1	KEGG: pna:Pnap_0373 hypothetical protein
YP_003168728.1	KEGG: rec:RHECIAT_CH0002802 hypothetical protein
YP_003168730.1	KEGG: mes:Meso_1533 transcriptional regulator, ArsR family
YP_003168731.1	KEGG: ppg:PputGB1_1741 hypothetical protein
YP_003168732.1	PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mlo:mlr0112 hypothetical protein
YP_003168736.1	PFAM: Ferritin Dps family protein; KEGG: rpb:RPB_0853 ferritin and Dps
YP_003168737.1	KEGG: eba:ebA6073 hypothetical protein
YP_003168738.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_3950 hemerythrin HHE cation binding region
YP_003168740.1	TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1643 alcohol dehydrogenase, zinc-binding
YP_003168741.1	TIGRFAM: prevent-host-death family protein; KEGG: azo:azo0288 hypothetical protein
YP_003168742.1	PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azo:azo3751 probable AraC family transcriptional regulator
YP_003168743.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: psa:PST_1584 hypothetical protein
YP_003168744.1	PFAM: protein of unknown function DUF1272; KEGG: sme:SMc01940 hypothetical protein
YP_003168745.1	PFAM: isochorismatase hydrolase; KEGG: azo:azo3750 isochorismatase family protein
YP_003168746.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cps:CPS_3143 phenazine biosynthesis protein, PhzF family
YP_003168747.1	PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: eba:ebA1881 hypothetical protein
YP_003168748.1	PFAM: protein of unknown function DUF28; KEGG: dar:Daro_4067 hypothetical protein
YP_003168750.1	PFAM: Carbamoyltransferase; KEGG: mag:amb0035 predicted carbamoyl transferase
YP_003168751.1	KEGG: mgm:Mmc1_0763 hypothetical protein
YP_003168752.1	KEGG: bid:Bind_1559 hypothetical protein
YP_003168753.1	KEGG: har:HEAR0421 hypothetical protein
YP_003168754.1	PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1
YP_003168755.1	SMART: TIR protein; KEGG: tca:662755 similar to Toll protein precursor
YP_003168756.1	PFAM: WD-40 repeat protein; KEGG: ter:Tery_3869 WD-40 repeat
YP_003168757.1	PFAM: Na+/solute symporter; KEGG: dar:Daro_4155 Na+/solute symporter
YP_003168758.1	PFAM: VanZ family protein; KEGG: dar:Daro_4156 VanZ like protein
YP_003168759.1	PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA3490 hypothetical protein
YP_003168760.1	KEGG: eba:ebB118 Fe2-S2-type ferredoxin
YP_003168761.1	KEGG: dar:Daro_4159 hypothetical protein
YP_003168762.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4160 ABC transporter related
YP_003168763.1	TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: dar:Daro_4165 ABC-2 type transporter, NodJ
YP_003168764.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: eba:ebA3572 divalent cation tolerance protein
YP_003168765.1	PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: dar:Daro_4167 cytochrome c biogenesis protein, transmembrane region
YP_003168766.1	KEGG: dar:Daro_2877 hypothetical protein
YP_003168767.1	PFAM: Mg2 transporter protein CorA family protein; KEGG: dar:Daro_3905 Mg2+ transporter protein, CorA-like
YP_003168768.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_003168769.1	KEGG: dar:Daro_3901 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_003168770.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: nmu:Nmul_A2627 phosphomethylpyrimidine kinase
YP_003168771.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bmu:Bmul_2526 rubredoxin-type Fe(Cys)4 protein
YP_003168772.1	PFAM: response regulator receiver; KEGG: dar:Daro_3899 response regulator receiver
YP_003168773.1	PFAM: response regulator receiver; KEGG: eba:ebB50 type IV pilus response regulator PilH
YP_003168774.1	PFAM: CheW domain protein; KEGG: dar:Daro_3897 CheW protein
YP_003168775.1	PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_3896 chemotaxis sensory transducer
YP_003168776.1	PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: dar:Daro_3895 response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt
YP_003168777.1	PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dar:Daro_3894 deoxyribodipyrimidine photo-lyase type I
YP_003168778.1	PFAM: protein of unknown function DUF179; KEGG: dar:Daro_3893 protein of unknown function DUF179
YP_003168779.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: mfa:Mfla_2100 Holliday junction resolvase-like protein
YP_003168780.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_003168781.1	TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dar:Daro_3890 aspartate carbamoyltransferase catalytic subunit
YP_003168782.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_003168783.1	PFAM: protein of unknown function DUF167; KEGG: dar:Daro_3887 conserved hypothetical protein 251
YP_003168784.1	PFAM: protein of unknown function YGGT; KEGG: eba:ebA1764 hypothetical protein
YP_003168785.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_003168786.1	PFAM: alanine racemase domain protein; KEGG: dar:Daro_3884 hypothetical protein
YP_003168787.1	KEGG: dar:Daro_3883 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_003168788.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_3882 pilus retraction protein PilT
YP_003168789.1	PFAM: putative RNA methylase; THUMP domain protein; KEGG: azo:azo3477 hypothetical protein
YP_003168790.1	PFAM: conserved hypothetical protein; KEGG: dar:Daro_0281 conserved hypothetical protein 701
YP_003168791.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dar:Daro_0280 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase
YP_003168792.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_0279 CDP-6-deoxy-delta-3,4-glucoseen reductase
YP_003168793.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: azo:azo3497 conserved hypothetical regulator protein
YP_003168794.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0274 ABC transporter related
YP_003168795.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0273 ABC transporter related
YP_003168796.1	PFAM: inner-membrane translocator; KEGG: dar:Daro_0272 inner-membrane translocator
YP_003168797.1	PFAM: inner-membrane translocator; KEGG: dar:Daro_0271 inner-membrane translocator
YP_003168798.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_0270 extracellular ligand-binding receptor
YP_003168799.1	PFAM: cytochrome c class I; KEGG: dar:Daro_0304 cytochrome c, class I
YP_003168800.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_003168801.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dar:Daro_0301 prolipoprotein diacylglyceryl transferase
YP_003168802.1	PFAM: Malonyl-CoA decarboxylase; KEGG: azo:azo0623 putative malonyl-CoA decarboxylase
YP_003168803.1	KEGG: azo:azo0692 probable lactoylglutathione lyase
YP_003168804.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sus:Acid_0646 IstB domain protein ATP-binding protein
YP_003168805.1	KEGG: sus:Acid_0647 hypothetical protein
YP_003168806.1	PFAM: ParB domain protein nuclease; KEGG: sus:Acid_0648 ParB domain protein nuclease
YP_003168807.1	KEGG: mms:mma_3461 hypothetical protein
YP_003168808.1	PFAM: protein of unknown function DUF344; KEGG: mgm:Mmc1_0146 protein of unknown function DUF344
YP_003168809.1	KEGG: rpt:Rpal_3511 hypothetical protein
YP_003168811.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mag:amb0869 protein-tyrosine-phosphatase
YP_003168812.1	KEGG: mfa:Mfla_1466 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_003168813.1	TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: dar:Daro_1738 5'-methylthioadenosine phosphorylase
YP_003168814.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_003168815.1	KEGG: dar:Daro_1734 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase
YP_003168816.1	SMART: ZipA FtsZ-binding region; KEGG: dar:Daro_1733 probable ZipA related protein, possibly involved in cell division
YP_003168817.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: dar:Daro_1732 chromosome segregation protein SMC
YP_003168818.1	TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: tbd:Tbd_1227 7-cyano-7-deazaguanine reductase
YP_003168819.1	TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: dar:Daro_1895 YgfB and YecA
YP_003168820.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A1849 protein of unknown function DUF6
YP_003168821.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_003168822.1	KEGG: rso:RSc1393 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein
YP_003168823.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_1725 pilus retraction protein PilT
YP_003168824.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_003168825.1	involved in methylation of ribosomal protein L3
YP_003168826.1	PFAM: lipolytic protein G-D-S-L family; KEGG: azo:azo2123 putative acyl-CoA thioesterase I
YP_003168827.1	TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: dar:Daro_3676 peptidase M, neutral zinc metallopeptidase, zinc-binding site
YP_003168828.1	KEGG: mpt:Mpe_A1717 hypothetical protein
YP_003168829.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: mpt:Mpe_A1716 Ca2+:cation antiporter, CaCA family
YP_003168830.1	KEGG: mpt:Mpe_A1714 hypothetical protein
YP_003168831.1	PFAM: protein of unknown function DUF456; KEGG: mpt:Mpe_A1010 hypothetical protein
YP_003168832.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dps:DP2126 hypothetical protein
YP_003168833.1	PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: xau:Xaut_3747 protein of unknown function DUF1214
YP_003168834.1	KEGG: dar:Daro_0587 hypothetical protein
YP_003168835.1	PFAM: YaeQ family protein; KEGG: dar:Daro_1792 YaeQ
YP_003168837.1	PFAM: protein of unknown function DUF62; KEGG: tbd:Tbd_0432 hypothetical protein
YP_003168838.1	KEGG: aba:Acid345_4053 hypothetical protein
YP_003168839.1	KEGG: eba:ebA7197 putative glycan acetyltransferase
YP_003168840.1	PFAM: Forkhead-associated protein; EAL domain protein; KEGG: hch:HCH_06590 FOG: EAL domain
YP_003168841.1	PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: amr:AM1_0812 hypothetical protein
YP_003168842.1	KEGG: eli:ELI_09350 hypothetical protein
YP_003168843.1	KEGG: eli:ELI_09345 hypothetical protein
YP_003168844.1	KEGG: cre:CHLREDRAFT_6783 SNF2 superfamily protein Pfam: ResIII DEAD SNF2_N Helicase_C SSDP Collagen Vps54 DMP1 PROSITE: ALA_RICH GLN_RICH GLU_RICH GLY_RICH HELICASE_ATP_BIND_1     HELICASE_CTER
YP_003168845.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mjl:Mjls_0938 AAA ATPase, central domain protein
YP_003168846.1	KEGG: lch:Lcho_3053 hypothetical protein
YP_003168847.1	TIGRFAM: phage tail protein; KEGG: rsq:Rsph17025_4353 hypothetical protein
YP_003168848.1	KEGG: lch:Lcho_3046 hypothetical protein
YP_003168849.1	PFAM: GPW/gp25 family protein; KEGG: rsq:Rsph17025_4351 hypothetical protein
YP_003168850.1	KEGG: lch:Lcho_3044 hypothetical protein
YP_003168852.1	KEGG: lch:Lcho_3040 hypothetical protein
YP_003168853.1	TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: cja:CJA_3051 conserved hypothetical phage tail region protein subfamily
YP_003168854.1	KEGG: sgr:SGR_2066 putative phage tail sheath protein
YP_003168855.1	TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4495 hypothetical protein
YP_003168856.1	PFAM: tail sheath protein; KEGG: eli:ELI_09285 phage tail sheath protein, putative
YP_003168858.1	KEGG: lch:Lcho_3034 hypothetical protein
YP_003168859.1	KEGG: cja:CJA_3057 hypothetical protein
YP_003168860.1	PFAM: cytochrome c class I; KEGG: nar:Saro_3480 cytochrome c, class I
YP_003168861.1	KEGG: pol:Bpro_3389 hypothetical protein
YP_003168862.1	PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_04233 sigma 54-dependent transcriptional activator
YP_003168863.1	KEGG: rrs:RoseRS_3993 PKD domain containing protein
YP_003168864.1	KEGG: mxa:MXAN_2242 putative lipoprotein
YP_003168865.1	KEGG: gur:Gura_1234 hypothetical protein
YP_003168866.1	KEGG: sus:Acid_2941 hypothetical protein
YP_003168867.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit
YP_003168868.1	PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rru:Rru_A2238 tripartite ATP-independent periplasmic transporter, DctQ component
YP_003168869.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rru:Rru_A2237 TRAP dicarboxylate transporter, DctM subunit
YP_003168870.1	KEGG: mpt:Mpe_A1522 hypothetical protein
YP_003168871.1	KEGG: eba:ebA3238 hypothetical protein
YP_003168872.1	PFAM: conserved hypothetical protein; KEGG: eba:ebA3236 hypothetical protein
YP_003168873.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: mms:mma_3585 DNA-damage-inducible protein P
YP_003168875.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_003168877.1	PFAM: Hemolysin-type calcium-binding region; Haemolysin-type calcium binding domain protein; KEGG: psp:PSPPH_0815 calcium binding hemolysin protein, putative
YP_003168878.1	PFAM: Methyltransferase type 11; KEGG: ote:Oter_3961 methyltransferase type 11
YP_003168879.1	PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4925 glycosyl transferase, group 1
YP_003168880.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: glo:Glov_0386 hemerythrin-like metal-binding protein
YP_003168881.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_003168882.1	KEGG: eba:ebA1330 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit
YP_003168883.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_003168884.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: eba:ebA1327 phospholipid and glycerol acyltransferase
YP_003168885.1	PFAM: protein of unknown function DUF45; KEGG: dar:Daro_3538 protein of unknown function DUF45
YP_003168886.1	KEGG: bvi:Bcep1808_2807 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_003168887.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rca:Rcas_3915 alpha amylase catalytic region
YP_003168889.1	KEGG: reu:Reut_A2064 conserved hypothetical signal peptide protein
YP_003168890.1	PFAM: polysaccharide deacetylase; KEGG: rme:Rmet_2067 polysaccharide deacetylase
YP_003168891.1	PFAM: fatty acid hydroxylase; KEGG: rso:RSc1254 probable transmembrane protein
YP_003168892.1	KEGG: scl:sce6063 hypothetical protein
YP_003168893.1	KEGG: sgl:SG1350 protease 4
YP_003168894.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0013 ABC transporter related
YP_003168895.1	KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_003168896.1	PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mca:MCA0777 DNA binding response regulator, LuxR family
YP_003168897.1	KEGG: ppd:Ppro_2714 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003168899.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azo:azo0455 putative cobalmin snthesis protein
YP_003168900.1	TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: pmj:P9211_00151 protein containing methionine sulfoxide reductase conserved domain
YP_003168901.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: pla:Plav_1523 peptide methionine sulfoxide reductase
YP_003168902.1	SMART: PUA domain containing protein; KEGG: dar:Daro_0196 SAM-dependent methyltransferase
YP_003168903.1	KEGG: dar:Daro_0136 hypothetical protein
YP_003168904.1	PFAM: electron transport protein SCO1/SenC; KEGG: dar:Daro_0135 electron transport protein SCO1/SenC
YP_003168905.1	KEGG: dar:Daro_4066 hypothetical protein
YP_003168910.1	PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter
YP_003168911.1	PFAM: UspA domain protein; KEGG: pol:Bpro_2222 UspA
YP_003168912.1	PFAM: protein of unknown function DUF47; KEGG: sse:Ssed_0369 protein of unknown function DUF47
YP_003168913.1	PFAM: phosphate transporter; KEGG: sse:Ssed_0370 phosphate transporter
YP_003168914.1	PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: dar:Daro_3451 protein of unknown function zinc binding 2
YP_003168915.1	PFAM: Peptidase M23; KEGG: dar:Daro_3453 peptidase M23B
YP_003168916.1	PFAM: ferric-uptake regulator; KEGG: dar:Daro_0934 ferric uptake regulator, Fur family
YP_003168917.1	PFAM: SmpA/OmlA domain protein; KEGG: dar:Daro_0935 SmpA/OmlA
YP_003168918.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_003168919.1	KEGG: tvo:TVN1411 predicted inactivated transposase
YP_003168920.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: dar:Daro_0938 carbamoyl-phosphate synthase small subunit
YP_003168921.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dar:Daro_0939 carbamoyl phosphate synthase large subunit
YP_003168922.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: dar:Daro_0940 prokaryotic transcription elongation factor GreA
YP_003168923.1	KEGG: dar:Daro_0941 hypothetical protein
YP_003168924.1	PFAM: protein of unknown function UPF0044; KEGG: dar:Daro_0942 hypothetical protein
YP_003168925.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dar:Daro_0943 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_003168926.1	KEGG: dar:Daro_0944 FtsH peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003168927.1	KEGG: dar:Daro_0945 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS
YP_003168928.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_003168929.1	KEGG: mpt:Mpe_A1524 membrane protein
YP_003168931.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dar:Daro_1637 Na+/solute symporter
YP_003168932.1	PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tbd:Tbd_0089 exonuclease
YP_003168933.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: azo:azo2201 putative nucleotidyltransferase
YP_003168934.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_003168935.1	PFAM: conserved hypothetical protein; KEGG: dar:Daro_1628 hypothetical protein
YP_003168936.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: azo:azo2415 putative fumarate hydratase
YP_003168937.1	PFAM: Endoribonuclease L-PSP; KEGG: dar:Daro_3455 endoribonuclease L-PSP
YP_003168938.1	KEGG: pmy:Pmen_1063 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_003168939.1	PFAM: HI0933 family protein; KEGG: reh:H16_A0973 predicted flavoprotein
YP_003168940.1	KEGG: tbd:Tbd_0051 hypothetical protein
YP_003168941.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_003168942.1	KEGG: dar:Daro_2469 protein of unknown function DUF480
YP_003168943.1	PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase
YP_003168944.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein
YP_003168945.1	KEGG: ajs:Ajs_3392 protein of unknown function DUF480
YP_003168946.1	PFAM: NUDIX hydrolase; KEGG: dar:Daro_0963 NUDIX hydrolase
YP_003168947.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003168948.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003168949.1	KEGG: dar:Daro_0960 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)
YP_003168950.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: eba:ebB168 NADH dehydrogenase subunit K
YP_003168951.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dar:Daro_0958 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_003168952.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003168953.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dar:Daro_0956 respiratory-chain NADH dehydrogenase, subunit 1
YP_003168954.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_003168955.1	KEGG: dar:Daro_0954 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
YP_003168956.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003168957.1	Catalyzes the transfer of electrons from NADH to quinone
YP_003168958.1	KEGG: dar:Daro_0951 NADH dehydrogenase subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit
YP_003168959.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_003168960.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: dar:Daro_0949 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_003168961.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dar:Daro_0948 preprotein translocase subunit SecG
YP_003168962.1	PFAM: metallophosphoesterase; KEGG: mgm:Mmc1_0230 hypothetical protein
YP_003168963.1	KEGG: dps:DP2625 similar to serine/threonine protein phosphatase
YP_003168964.1	PFAM: phosphate transporter; KEGG: mgm:Mmc1_0229 phosphate transporter
YP_003168965.1	PFAM: protein of unknown function DUF47; KEGG: mgm:Mmc1_0228 protein of unknown function DUF47
YP_003168966.1	PFAM: protein of unknown function DUF47; KEGG: bph:Bphy_0916 protein of unknown function DUF47
YP_003168967.1	PFAM: phosphate transporter; KEGG: har:HEAR2156 low-affinity inorganic phosphate transporter
YP_003168968.1	PFAM: protein of unknown function DUF47; KEGG: bph:Bphy_0916 protein of unknown function DUF47
YP_003168969.1	KEGG: azo:azo0344 hypothetical protein
YP_003168970.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: azo:azo0343 probable ParA family protein
YP_003168971.1	PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; KEGG: hau:Haur_1995 ATP-dependent transcriptional regulator, MalT-like, LuxR family
YP_003168972.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rfr:Rfer_2744 phospholipid/glycerol acyltransferase
YP_003168973.1	PFAM: GTP-binding protein HSR1-related; KEGG: eba:ebA6197 GTP-binding protein
YP_003168974.1	KEGG: eba:ebA6193 hypothetical protein
YP_003168976.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_003168977.1	PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0775 helix-turn-helix, fis-type
YP_003168978.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0774 ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_003168979.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_003168980.1	PFAM: flagellar motor switch protein FliG; KEGG: dar:Daro_0772 flagellar motor switch protein FliG
YP_003168981.1	PFAM: flagellar assembly protein FliH; KEGG: dar:Daro_0771 flagellar assembly protein FliH
YP_003168982.1	KEGG: dar:Daro_0770 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase
YP_003168983.1	TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: azo:azo2720 putative flagellar protein FliJ
YP_003168984.1	PFAM: flagellar hook-length control protein; KEGG: dar:Daro_0768 flagellar hook-length control protein
YP_003168985.1	PFAM: flagellar basal body-associated protein FliL; KEGG: dar:Daro_0767 flagellar basal body-associated protein FliL
YP_003168986.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_003168987.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dar:Daro_0765 type III secretion system outer membrane O protein
YP_003168988.1	PFAM: flagellar biosynthesis protein FliO; KEGG: dar:Daro_0764 flagellar biosynthesis protein, FliO
YP_003168989.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_003168990.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: azo:azo2727 flagellar biosynthesis protein FliQ
YP_003168991.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dar:Daro_0761 flagellar biosynthesis protein FliR
YP_003168992.1	KEGG: dar:Daro_0760 hypothetical protein
YP_003168993.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mms:mma_1428 FlgL flagellar hook-associated proteins 3
YP_003168994.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_003168995.1	KEGG: dar:Daro_0757 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2
YP_003168996.1	PFAM: flagellar P-ring protein; KEGG: azo:azo2733 flagellar basal body P-ring protein
YP_003168997.1	PFAM: flagellar L-ring protein; KEGG: dar:Daro_0755 flagellar L-ring protein
YP_003168998.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0754 flagellar basal body rod protein FlgG
YP_003168999.1	TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0753 protein of unknown function DUF1078
YP_003169000.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tbd:Tbd_1634 flagellar hook protein FlgE
YP_003169001.1	PFAM: flagellar hook capping protein; KEGG: dar:Daro_0751 flagellar hook capping protein
YP_003169002.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0750 flagellar basal-body rod protein FlgC
YP_003169003.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tbd:Tbd_1637 flagellar basal-body rod protein FlgB
YP_003169004.1	TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dar:Daro_0748 flagellar basal body P-ring biosynthesis protein FlgA
YP_003169005.1	PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dar:Daro_0747 hypothetical protein
YP_003169006.1	PFAM: FlgN family protein; KEGG: net:Neut_2438 FlgN family protein
YP_003169007.1	Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility
YP_003169008.1	homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC
YP_003169009.1	KEGG: dar:Daro_0743 sigma-70 region 4; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2
YP_003169010.1	KEGG: dar:Daro_0742 putative MinD-related protein
YP_003169011.1	positive regulator of class III flagellar genes
YP_003169012.1	membrane protein involved in the flagellar export apparatus
YP_003169013.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_003169014.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dar:Daro_0738 CheW-like protein:ATP-binding region, ATPase-like:signal transducing histidine kinase, homodimeric:Hpt
YP_003169015.1	PFAM: Chemotaxis phosphatase CheZ; KEGG: dar:Daro_0737 chemotaxis regulator CheZ
YP_003169016.1	PFAM: response regulator receiver; KEGG: azo:azo1460 chemotaxis response regulator
YP_003169017.1	PFAM: response regulator receiver; CheW domain protein; KEGG: dar:Daro_0735 response regulator receiver:CheW-like protein
YP_003169018.1	PFAM: response regulator receiver; CheW domain protein; KEGG: dar:Daro_0734 response regulator receiver:CheW-like protein
YP_003169019.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azo:azo1457 methyl accepting chemotaxis protein
YP_003169020.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_003169021.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: mfa:Mfla_0529 diguanylate cyclase (GGDEF domain)
YP_003169022.1	KEGG: dar:Daro_0062 biopolymer transport protein TolA
YP_003169023.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dar:Daro_0202 hypothetical protein
YP_003169024.1	heat shock protein involved in degradation of misfolded proteins
YP_003169025.1	heat shock protein involved in degradation of misfolded proteins
YP_003169026.1	PFAM: UspA domain protein; KEGG: net:Neut_2130 UspA domain protein
YP_003169027.1	PFAM: Integral membrane protein TerC; KEGG: eba:ebA3576 predicted integral membrane protein TerC family
YP_003169029.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_003169030.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_3100 transcriptional regulator, LysR family
YP_003169031.1	KEGG: bwe:BcerKBAB4_1175 HNH endonuclease
YP_003169032.1	PFAM: histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: rme:Rmet_3876 metal dependent phosphohydrolase
YP_003169033.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: dar:Daro_3098 isocitrate lyase
YP_003169035.1	KEGG: gur:Gura_3178 hypothetical protein
YP_003169036.1	PFAM: ferric-uptake regulator; KEGG: eba:ebA1809 ferric uptake regulator
YP_003169037.1	PFAM: protein of unknown function DUF218; KEGG: swo:Swol_0732 hypothetical protein
YP_003169038.1	PFAM: acylphosphatase; KEGG: azo:azo3205 conserved hypothetical acylphosphatase
YP_003169039.1	KEGG: dar:Daro_0564 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_003169040.1	KEGG: dar:Daro_0565 hypothetical protein
YP_003169041.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dar:Daro_0566 NADH-ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal:NADH/ubiquinone/plastoquinone (complex I)
YP_003169042.1	KEGG: dar:Daro_0567 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_003169043.1	KEGG: dar:Daro_0568 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_003169044.1	PFAM: protein of unknown function DUF955; KEGG: mpt:Mpe_A2374 hypothetical protein
YP_003169045.1	PFAM: helix-turn-helix domain protein; KEGG: mpt:Mpe_A2373 transcriptional regulator, XRE family
YP_003169046.1	KEGG: mpt:Mpe_A2372 hypothetical protein
YP_003169047.1	KEGG: mpt:Mpe_A2371 hypothetical protein
YP_003169048.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A2370 AAA+ class ATPase
YP_003169049.1	KEGG: mes:Meso_4407 hypothetical protein
YP_003169050.1	KEGG: shn:Shewana3_1248 hypothetical protein
YP_003169051.1	KEGG: amr:AM1_A0238 hypothetical protein
YP_003169052.1	KEGG: mta:Moth_2333 protein of unknown function DUF132
YP_003169055.1	KEGG: gur:Gura_3178 hypothetical protein
YP_003169056.1	PFAM: Peptidase C13, legumain asparaginyl peptidase; KEGG: azo:azo1258 hypothetical membrane protein
YP_003169058.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: azo:azo1604 hypothetical protein
YP_003169059.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_003169060.1	KEGG: azo:azo3214 hypothetical protein
YP_003169061.1	KEGG: dar:Daro_2860 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase
YP_003169062.1	PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_0840 hypothetical protein
YP_003169063.1	PFAM: RNA-binding S4 domain protein; KEGG: mfa:Mfla_2529 pseudouridine synthase, Rsu
YP_003169064.1	KEGG: bch:Bcen2424_5476 hypothetical protein
YP_003169065.1	KEGG: mta:Moth_0823 protein of unknown function DUF342
YP_003169066.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_003169067.1	TIGRFAM: cyanophycin synthetase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Mur ligase middle domain protein; RimK domain protein ATP-grasp; KEGG: bbr:BB3584 cyanophycin synthetase
YP_003169068.1	PFAM: Domain of unknown function DUF1854; KEGG: nmu:Nmul_A2253 hypothetical protein
YP_003169069.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A2254 ABC transporter related
YP_003169070.1	KEGG: dar:Daro_0836 hypothetical protein
YP_003169071.1	PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mgm:Mmc1_3142 adenylate/guanylate cyclase
YP_003169072.1	KEGG: afw:Anae109_3304 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases
YP_003169073.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: dar:Daro_2744 RNA binding S1
YP_003169074.1	catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity
YP_003169075.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_003169076.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2351 ABC transpoter ATPase
YP_003169077.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: wsu:WS1527 hypothetical protein-hemerythrin
YP_003169078.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: amr:AM1_0522 diguanylate cyclase/phosphodiesterase, putative
YP_003169079.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4032 ABC transporter related
YP_003169080.1	PFAM: transport system permease protein; KEGG: dar:Daro_4031 transport system permease protein
YP_003169081.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mfa:Mfla_0122 TonB-dependent receptor
YP_003169082.1	KEGG: tbd:Tbd_2722 hypothetical protein
YP_003169083.1	PFAM: protein of unknown function DUF710; KEGG: dar:Daro_4027 cell division protein ZapA
YP_003169084.1	PFAM: NapD family protein; KEGG: sbm:Shew185_0825 NapD family protein
YP_003169085.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_003169086.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway
YP_003169087.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA
YP_003169088.1	PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: azo:azo3939 probable diheme cytochrome c
YP_003169089.1	PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine-binding; KEGG: reh:H16_B2100 two domain protein: acyl-CoA synthetase (AMP-forming) and acytransferase
YP_003169090.1	TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo3944 probable ferredoxin-type protein NapF
YP_003169091.1	TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pmy:Pmen_1752 cob(II)yrinic acid a,c-diamide reductase
YP_003169092.1	KEGG: dar:Daro_2972 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein
YP_003169093.1	PFAM: carboxyl transferase; KEGG: rru:Rru_A0051 carboxyl transferase
YP_003169095.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rru:Rru_A0049 biotin/lipoyl attachment
YP_003169096.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: sat:SYN_00115 Na+-transporting decarboxylase, beta subunit
YP_003169097.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: eba:ebA4732 predicted polyhydroxyalkanoate synthesis repressor PhaR
YP_003169098.1	TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_1610 acetoacetyl-CoA reductase
YP_003169099.1	KEGG: azo:azo1020 hypothetical protein
YP_003169100.1	PFAM: protein of unknown function DUF152; KEGG: cvi:CV_2191 hypothetical protein
YP_003169101.1	KEGG: eba:ebA4725 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase
YP_003169102.1	TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dar:Daro_1603 putative competence lipoprotein precursor
YP_003169103.1	PFAM: Metal-dependent hydrolase HDOD; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_1602 protein kinase:GAF
YP_003169104.1	PFAM: protein of unknown function DUF195; KEGG: dar:Daro_1600 protein of unknown function DUF195
YP_003169105.1	PFAM: protein of unknown function DUF748; KEGG: dar:Daro_1599 protein of unknown function DUF748
YP_003169106.1	PFAM: response regulator receiver; KEGG: dar:Daro_1596 response regulator receiver
YP_003169107.1	KEGG: dar:Daro_1595 beta-lactamase-like; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein
YP_003169108.1	PFAM: Methyltransferase type 11; KEGG: dar:Daro_1594 generic methyl-transferase
YP_003169109.1	PFAM: ribonuclease H; KEGG: dar:Daro_1593 ribonuclease H
YP_003169110.1	KEGG: dar:Daro_1592 DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease
YP_003169111.1	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: dar:Daro_2908 periplasmic copper-binding
YP_003169112.1	KEGG: dar:Daro_1798 hypothetical protein
YP_003169113.1	PFAM: SlyX family protein; KEGG: azo:azo1250 conserved hypotheitcal protein
YP_003169114.1	PFAM: YiaAB two helix domain protein; KEGG: bam:Bamb_0668 YiaAB two helix domain protein
YP_003169115.1	PFAM: extracellular solute-binding protein family 3; KEGG: xau:Xaut_4035 extracellular solute-binding protein family 3
YP_003169116.1	PFAM: sodium/calcium exchanger membrane region; KEGG: bph:Bphy_3245 sodium/calcium exchanger membrane region
YP_003169119.1	KEGG: tvo:TVN1411 predicted inactivated transposase
YP_003169121.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: vei:Veis_0367 threonyl/alanyl tRNA synthetase, SAD
YP_003169123.1	KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003169124.1	KEGG: dar:Daro_0497 hypothetical protein
YP_003169125.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebA2310 conserved hypothetical protein, predicted prevent-host-death family protein
YP_003169126.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: eba:ebB67 plasmid stabilization system protein
YP_003169127.1	KEGG: dar:Daro_0497 hypothetical protein
YP_003169128.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_0496 short-chain dehydrogenase/reductase SDR
YP_003169129.1	KEGG: dar:Daro_0495 lipoprotein, putative
YP_003169130.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0494 major facilitator superfamily MFS_1
YP_003169131.1	KEGG: azo:azo3312 conserved hypothetical secreted protein
YP_003169132.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase
YP_003169133.1	PFAM: protein of unknown function DUF1365; KEGG: dar:Daro_0491 protein of unknown function DUF1365
YP_003169134.1	PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_0490 amine oxidase:FAD dependent oxidoreductase
YP_003169135.1	PFAM: protein of unknown function DUF198; KEGG: dar:Daro_0489 GTP cyclohydrolase
YP_003169136.1	PFAM: glutathione peroxidase; KEGG: dar:Daro_0488 glutathione peroxidase
YP_003169137.1	KEGG: mca:MCA0944 hypothetical protein
YP_003169138.1	KEGG: dar:Daro_1829 putative lipoprotein involved in nitrous oxide reduction
YP_003169139.1	KEGG: dar:Daro_1830 twin-arginine translocation pathway signal
YP_003169140.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A1047 biopolymer transport protein ExbD/TolR
YP_003169141.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: tbd:Tbd_0911 MotA/TolQ/ExbB proton channel family
YP_003169142.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: nmu:Nmul_A1049 TonB-like
YP_003169143.1	PFAM: PepSY-associated TM helix domain protein; KEGG: pau:PA14_05650 hypothetical protein
YP_003169144.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_4063 outer membrane ferric siderophore receptor
YP_003169145.1	KEGG: gvi:glr1760 hypothetical protein
YP_003169146.1	PFAM: putative transposase; KEGG: pol:Bpro_4833 putative transposase
YP_003169147.1	PFAM: integrase family protein; KEGG: pol:Bpro_1585 phage integrase
YP_003169148.1	KEGG: dar:Daro_1830 twin-arginine translocation pathway signal
YP_003169149.1	KEGG: dar:Daro_1831 hypothetical protein
YP_003169150.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1836 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_003169151.1	KEGG: dar:Daro_1837 hypothetical protein
YP_003169152.1	KEGG: dar:Daro_1838 hypothetical protein
YP_003169153.1	KEGG: mca:MCA0802 hypothetical protein
YP_003169154.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1839 cytochrome c biogenesis protein
YP_003169155.1	KEGG: dar:Daro_1840 hypothetical protein
YP_003169156.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1841 ABC transporter related
YP_003169157.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1842 protein of unknown function DUF214
YP_003169158.1	KEGG: mag:amb2918 hypothetical protein
YP_003169159.1	KEGG: dar:Daro_1845 hypothetical protein
YP_003169160.1	KEGG: tbd:Tbd_1838 hypothetical protein
YP_003169161.1	Inhibits transcription at high concentrations of nickel
YP_003169162.1	PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nmu:Nmul_A0973 TonB-dependent receptor
YP_003169163.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hau:Haur_2097 ABC transporter related
YP_003169164.1	PFAM: ABC-3 protein; KEGG: hau:Haur_2096 ABC-3 protein
YP_003169165.1	KEGG: hau:Haur_2095 periplasmic solute binding protein
YP_003169166.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fre:Franean1_5232 methyltransferase type 11
YP_003169167.1	KEGG: pfo:PflO1_5675 hypothetical protein
YP_003169169.1	KEGG: gur:Gura_0800 hypothetical protein
YP_003169170.1	KEGG: pfl:PFL_5502 hypothetical protein
YP_003169171.1	KEGG: rso:RSc3028 putative signal peptide protein
YP_003169172.1	KEGG: rso:RSc3029 putative signal peptide protein
YP_003169173.1	PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pau:PA14_58250 hypothetical protein
YP_003169174.1	PFAM: protein of unknown function DUF1175; KEGG: rso:RSc3031 hypothetical protein
YP_003169175.1	KEGG: pfo:PflO1_5002 hypothetical protein
YP_003169177.1	PFAM: regulatory protein MerR; KEGG: dar:Daro_0487 regulatory protein, MerR
YP_003169178.1	PFAM: protein of unknown function DUF752; KEGG: pdi:BDI_3482 hypothetical protein
YP_003169179.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_003169180.1	PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein
YP_003169181.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_3724 4Fe-4S ferredoxin, iron-sulfur binding
YP_003169182.1	KEGG: dar:Daro_3723 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase
YP_003169183.1	TIGRFAM: methyltransferase; PFAM: methyltransferase small; Protein of unknown function methylase putative; KEGG: dar:Daro_3722 conserved hypothetical protein 95
YP_003169184.1	PFAM: peptidase M16 domain protein; KEGG: dar:Daro_3721 peptidase M16, C-terminal:peptidase M16, N-terminal
YP_003169185.1	PFAM: peptidase M16 domain protein; KEGG: dar:Daro_3719 peptidase M16, C-terminal:peptidase M16, N-terminal
YP_003169186.1	KEGG: dar:Daro_3718 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase
YP_003169187.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3717 cell division ATP-binding protein FtsE
YP_003169188.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3716 cell division protein FtsX
YP_003169189.1	PFAM: diacylglycerol kinase; KEGG: azo:azo0859 probable diacylglycerol kinase
YP_003169190.1	KEGG: dar:Daro_3560 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase
YP_003169191.1	PFAM: Fe(II) trafficking protein YggX; KEGG: dar:Daro_3583 hypothetical protein
YP_003169192.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_003169193.1	PFAM: protein of unknown function DUF344; KEGG: dar:Daro_3585 polyphosphate:AMP phosphotransferase
YP_003169194.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_003169195.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_3587 hypothetical protein
YP_003169196.1	PFAM: inositol monophosphatase; KEGG: nmu:Nmul_A0377 inositol monophosphatase
YP_003169197.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pfl:PFL_1287 cysteine synthase
YP_003169198.1	PFAM: protein of unknown function DUF59; KEGG: dar:Daro_0576 protein of unknown function DUF59
YP_003169199.1	KEGG: tbd:Tbd_0367 hypothetical protein
YP_003169200.1	TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: mfa:Mfla_1060 deoxycytidine triphosphate deaminase
YP_003169201.1	PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: mfa:Mfla_1059 ornithine decarboxylase
YP_003169202.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbe:Cbei_2190 protein of unknown function DUF21
YP_003169203.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_003169204.1	PFAM: histidinol dehydrogenase; KEGG: dar:Daro_3387 histidinol dehydrogenase
YP_003169205.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: eba:ebA1297 histidinol-phosphate aminotransferase
YP_003169206.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dar:Daro_3382 imidazoleglycerol-phosphate dehydratase
YP_003169207.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dar:Daro_3381 imidazole glycerol phosphate synthase subunit HisH
YP_003169208.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_003169209.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_003169210.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dar:Daro_3378 phosphoribosyl-AMP cyclohydrolase
YP_003169211.1	TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: dar:Daro_3377 phosphoribosyl-ATP pyrophosphatase
YP_003169212.1	PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_3376 histidine triad (HIT) protein
YP_003169213.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dar:Daro_3375 twin argininte translocase protein A
YP_003169214.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bpt:Bpet0128 sec-independent protein translocase protein
YP_003169215.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: tbd:Tbd_1702 sec-independent protein translocase TatC
YP_003169216.1	PFAM: glutamine amidotransferase class-II; KEGG: dar:Daro_3372 glutamine amidotransferase, class-II
YP_003169217.1	PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dar:Daro_3371 peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF
YP_003169218.1	PFAM: protein of unknown function DUF34; KEGG: dar:Daro_3370 protein of unknown function DUF34
YP_003169219.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dar:Daro_3368 fumarylacetoacetate (FAA) hydrolase
YP_003169220.1	KEGG: dar:Daro_3348 hypothetical protein
YP_003169221.1	PFAM: Heptaprenyl diphosphate synthase component I; KEGG: dar:Daro_0068 heptaprenyl diphosphate synthase component I
YP_003169222.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dar:Daro_0067 aromatic acid decarboxylase
YP_003169223.1	PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3967 permease of the major facilitator superfamily
YP_003169224.1	KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003169225.1	KEGG: bcm:Bcenmc03_2808 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_003169226.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: azo:azo3811 probable nitrilotriacetate monooxygenase
YP_003169227.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: azo:azo1134 cold-shock protein
YP_003169228.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: eba:ebD83 ATP-dependent Clp protease adaptor protein ClpS
YP_003169229.1	KEGG: dar:Daro_3095 AAA ATPase, central region:Clp, N terminal; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_003169230.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_003169231.1	PFAM: Ankyrin; KEGG: dar:Daro_1199 ankyrin
YP_003169232.1	PFAM: protein of unknown function DUF847; KEGG: bcs:BCAN_A1001 protein of unknown function DUF847
YP_003169233.1	KEGG: pol:Bpro_1508 integral membrane protein-like
YP_003169234.1	KEGG: pol:Bpro_1508 integral membrane protein-like
YP_003169235.1	PFAM: MscS Mechanosensitive ion channel; KEGG: cti:RALTA_B0305 putative mechanosensitive ion channel, MscS family
YP_003169236.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dar:Daro_3328 Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62
YP_003169237.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dar:Daro_3329 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_003169238.1	KEGG: dar:Daro_3330 conserved hypothetical protein 2099
YP_003169239.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_003169240.1	PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403
YP_003169241.1	PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pmy:Pmen_0657 transglutaminase, N-terminal domain protein
YP_003169242.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA4146 cation transport ATPase
YP_003169243.1	KEGG: hch:HCH_01698 predicted membrane protein
YP_003169244.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: swi:Swit_1316 diguanylate cyclase
YP_003169245.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sus:Acid_1028 putative regulatory protein, FmdB family
YP_003169246.1	KEGG: rme:Rmet_3472 hypothetical protein
YP_003169247.1	KEGG: reu:Reut_A3320 hypothetical protein
YP_003169248.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: mpt:Mpe_A3247 conserved hypothetical dioxygenase
YP_003169249.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_003169250.1	KEGG: dar:Daro_0197 hypothetical protein
YP_003169251.1	KEGG: dar:Daro_0198 hypothetical protein
YP_003169252.1	PFAM: periplasmic solute binding protein; KEGG: tbd:Tbd_2538 zinc/manganese transport system substrate-binding protein
YP_003169253.1	PFAM: ABC-3 protein; KEGG: tbd:Tbd_2539 zinc/manganese transport system permease protein
YP_003169254.1	KEGG: vei:Veis_3396 ABC-type metal ion transport system, periplasmic component/surface adhesin
YP_003169255.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3395 ABC transporter related
YP_003169256.1	PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_0704 protein of unknown function DUF214
YP_003169257.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003169258.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003169259.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003169260.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003169261.1	KEGG: mpt:Mpe_A1829 hypothetical protein
YP_003169262.1	PFAM: sulfatase; KEGG: pau:PA14_52300 hypothetical protein
YP_003169263.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dar:Daro_0680 C4-dicarboxylate transporter/malic acid transport protein
YP_003169264.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: azo:azo1418 putative cobalt-zinc-cadmium resistance protein
YP_003169265.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rxy:Rxyl_2877 GCN5-related N-acetyltransferase
YP_003169266.1	PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dar:Daro_0005 D-tyrosyl-tRNA deacylase
YP_003169268.1	KEGG: dar:Daro_2515 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein
YP_003169269.1	PFAM: Collagen triple helix repeat; KEGG: bph:Bphy_3402 collagen triple helix repeat
YP_003169270.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: eba:ebA5836 2,4-dienoyl-CoA reductase
YP_003169271.1	KEGG: bte:BTH_II0293 transcriptional regulator, TetR family, putative
YP_003169272.1	PFAM: Rhodanese domain protein; KEGG: azo:azo2754 putative thiosulfate sulfurtransferase
YP_003169273.1	KEGG: eba:ebB151 hypothetical protein
YP_003169274.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: dar:Daro_3059 exodeoxyribonuclease VII small subunit
YP_003169275.1	PFAM: Polyprenyl synthetase; KEGG: dar:Daro_3060 farnesyl-diphosphate synthase
YP_003169276.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_003169277.1	PFAM: protein of unknown function DUF198; KEGG: dar:Daro_3062 GTP cyclohydrolase
YP_003169278.1	PFAM: ribosomal protein L19; KEGG: dar:Daro_3063 50S ribosomal protein L19
YP_003169279.1	KEGG: dar:Daro_3064 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase
YP_003169280.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: azo:azo2899 conserved hypothetical 16S rRNA processing protein
YP_003169281.1	PFAM: ribosomal protein S16; KEGG: reu:Reut_A2540 30S ribosomal protein S16
YP_003169282.1	PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region
YP_003169283.1	KEGG: dar:Daro_3067 hypothetical protein
YP_003169284.1	PFAM: ribonuclease BN; KEGG: dar:Daro_3068 ribonuclease BN
YP_003169285.1	TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: eba:ebA7157 flavodoxin-like protein
YP_003169286.1	KEGG: tbd:Tbd_1980 hypothetical protein
YP_003169287.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_003169288.1	KEGG: dar:Daro_3072 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_003169289.1	KEGG: eba:ebA7134 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein
YP_003169290.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_003169291.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo3154 acetolactate synthase
YP_003169292.1	TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_3076 RNA polymerase factor sigma-70
YP_003169293.1	KEGG: dar:Daro_3077 probable transmembrane protein
YP_003169294.1	KEGG: dar:Daro_3078 hypothetical protein
YP_003169295.1	PFAM: RDD domain containing protein; KEGG: azo:azo3150 conserved hypothetical RDD family protein
YP_003169296.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dar:Daro_3080 permease YjgP/YjgQ
YP_003169297.1	PFAM: permease YjgP/YjgQ family protein; KEGG: dar:Daro_3081 permease YjgP/YjgQ
YP_003169298.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_003169299.1	PFAM: DNA polymerase III chi subunit HolC; KEGG: dar:Daro_3083 DNA polymerase III chi subunit, HolC
YP_003169300.1	KEGG: cur:cu0218 hypothetical protein
YP_003169301.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_003169302.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: dar:Daro_3087 Para-aminobenzoate synthase, component I
YP_003169303.1	PFAM: SirA family protein; KEGG: dar:Daro_3088 SirA-like
YP_003169304.1	PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_3089 peptidase M48, Ste24p
YP_003169305.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dar:Daro_3090 molybdenum cofactor biosynthesis protein C
YP_003169306.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein
YP_003169307.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mpt:Mpe_A1914 UDP-galactose 4-epimerase
YP_003169308.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_003169309.1	KEGG: azo:azo2840 putative secreted protein
YP_003169310.1	PFAM: PfkB domain protein; KEGG: dar:Daro_3935 PfkB
YP_003169311.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: dar:Daro_3936 hypothetical protein
YP_003169312.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_003169313.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_003169314.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: azo:azo0864 probable biotin carboxyl carrier protein of acetyl-CoA carboxylase
YP_003169316.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: har:HEAR2760 thioredoxin-related transmembrane protein
YP_003169317.1	KEGG: dar:Daro_3941 hypothetical protein
YP_003169318.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3942 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
YP_003169319.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_003169320.1	KEGG: dar:Daro_1464 probable transmembrane protein
YP_003169321.1	KEGG: dar:Daro_1465 surfeit locus 1
YP_003169322.1	KEGG: dar:Daro_1466 hypothetical protein
YP_003169323.1	PFAM: cytochrome c oxidase subunit III; KEGG: dar:Daro_1467 cytochrome c oxidase, subunit III
YP_003169324.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_003169325.1	KEGG: dar:Daro_1470 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I
YP_003169326.1	KEGG: dar:Daro_1471 cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome c oxidase subunit II, transmembrane region; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region
YP_003169327.1	KEGG: noc:Noc_3048 hypothetical protein
YP_003169328.1	TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: dar:Daro_3837 RNA polymerase factor sigma-32
YP_003169329.1	KEGG: mpt:Mpe_A2832 hypothetical protein
YP_003169330.1	PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: mpt:Mpe_A2831 hypothetical protein
YP_003169331.1	KEGG: mpt:Mpe_A2830 hypothetical protein
YP_003169332.1	PFAM: NUDIX hydrolase; KEGG: neu:NE2253 dATP pyrophosphohydrolase
YP_003169333.1	KEGG: eba:ebA4336 hypothetical protein
YP_003169334.1	PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dar:Daro_0633 guanine-specific ribonuclease N1 and T1
YP_003169335.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_003169336.1	PFAM: protein of unknown function DUF502; KEGG: dar:Daro_0635 protein of unknown function DUF502
YP_003169337.1	TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: har:HEAR2846 hypothetical protein
YP_003169338.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: eba:ebA4343 type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD
YP_003169339.1	PFAM: type II secretion system protein; KEGG: dar:Daro_0638 type II secretion system protein
YP_003169340.1	TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dar:Daro_0639 type II secretion system protein E:general secretory system II, protein E, N-terminal
YP_003169342.1	TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dar:Daro_0194 tyrosine recombinase XerC subunit
YP_003169343.1	PFAM: protein of unknown function DUF484; KEGG: dar:Daro_0193 protein of unknown function DUF484
YP_003169344.1	PFAM: diaminopimelate epimerase; KEGG: dar:Daro_0192 diaminopimelate epimerase
YP_003169345.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_0191 GCN5-related N-acetyltransferase
YP_003169346.1	TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: azo:azo3636 glucosamine-fructose-6-phosphate aminotransferase
YP_003169347.1	TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: dar:Daro_0220 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
YP_003169348.1	TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA2251 glutamate synthase subunit beta
YP_003169349.1	PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: eba:ebA2252 ferredoxin-dependent glutamate synthase
YP_003169350.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_003169351.1	PFAM: NAD(P) transhydrogenase beta subunit; KEGG: rfr:Rfer_3753 NAD(P) transhydrogenase, beta subunit
YP_003169352.1	PFAM: CBS domain containing protein; KEGG: pna:Pnap_2757 CBS domain containing protein
YP_003169353.1	KEGG: bte:BTH_I3022 deoxyguanosinetriphosphate triphosphohydrolase, putative; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003169354.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_003169355.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_003169356.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: azo:azo3646 probable type 4 fimbrial biogenesis protein
YP_003169357.1	PFAM: Pilus assembly protein PilP; KEGG: azo:azo3647 putative type 4 fimbrial biogenesis protein
YP_003169358.1	PFAM: Pilus assembly protein PilO; KEGG: dar:Daro_0212 pilus assembly protein, PilO
YP_003169359.1	PFAM: Fimbrial assembly family protein; KEGG: dar:Daro_0211 fimbrial assembly
YP_003169360.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM
YP_003169361.1	KEGG: dar:Daro_0209 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase
YP_003169363.1	KEGG: azo:azo3572 lipid A export ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_003169364.1	KEGG: eba:ebA3993 conserved hypothetical protein, predicted protein kinase family
YP_003169365.1	PFAM: lipopolysaccharide kinase; KEGG: eba:ebA3995 lipopolysaccharide core biosynthesis protein WaaP
YP_003169366.1	PFAM: glycosyl transferase group 1; KEGG: eba:ebA3996 UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase
YP_003169367.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_003169368.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_003169369.1	KEGG: rfr:Rfer_3329 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region
YP_003169370.1	TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_0145 ubiquinol-cytochrome c reductase, iron-sulfur subunit
YP_003169371.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cti:RALTA_A0493 conserved hypothetical protein, COG2989; putative exported protein
YP_003169372.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: reh:H16_A0538 hypothetical protein
YP_003169373.1	KEGG: dac:Daci_2490 hypothetical protein
YP_003169374.1	KEGG: glo:Glov_1953 hypothetical protein
YP_003169375.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A4020 putative 10 TMS drug/metabolite exporter (DME)family, DMT superfamily
YP_003169376.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related
YP_003169377.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_1924 molybdate ABC transporter, inner membrane subunit
YP_003169378.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mfa:Mfla_1391 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_003169379.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dar:Daro_0672 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_003169380.1	KEGG: dar:Daro_0671 aldehyde dehydrogenase
YP_003169381.1	PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dar:Daro_0668 regulatory proteins, IclR
YP_003169382.1	KEGG: dar:Daro_0466 competence protein ComEA helix-hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1
YP_003169383.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: azo:azo0573 hypothetical protein
YP_003169384.1	KEGG: dar:Daro_4063 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC
YP_003169385.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_003169386.1	PFAM: protein of unknown function UPF0118; KEGG: dar:Daro_4061 hypothetical protein
YP_003169387.1	KEGG: dar:Daro_4060 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_003169388.1	TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: dar:Daro_4057 4-hydroxybenzoyl-CoA thioesterase
YP_003169389.1	TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dar:Daro_4056 MotA/TolQ/ExbB proton channel
YP_003169390.1	TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0216 biopolymer transport protein ExbD/TolR
YP_003169391.1	TIGRFAM: TonB family protein; protein TolA; KEGG: eba:ebA2648 hypothetical protein
YP_003169392.1	KEGG: bph:Bphy_7285 hypothetical protein
YP_003169393.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_003169394.1	TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_4052 OmpA/MotB
YP_003169395.1	TIGRFAM: tol-pal system protein YbgF; KEGG: dar:Daro_4051 hypothetical protein
YP_003169396.1	PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_2203 radical activating enzyme; radical SAM family
YP_003169397.1	PFAM: type IV pilus assembly PilZ; KEGG: azo:azo0645 hypothetical protein
YP_003169398.1	PFAM: glutaredoxin; glutaredoxin 2; KEGG: mca:MCA2787 hypothetical protein
YP_003169399.1	PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA6362 putative endonuclease
YP_003169400.1	PFAM: helicase domain protein; type III restriction protein res subunit; thiopurine S-methyltransferase; peptidase S24 and S26 domain protein; DEAD/DEAH box helicase domain protein; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; SMART: DEAD-like helicases; KEGG: vvu:VV1_2188 helicase-related protein
YP_003169401.1	KEGG: hau:Haur_4781 putative restriction endonuclease
YP_003169402.1	KEGG: azo:azo1674 hypothetical protein
YP_003169404.1	KEGG: dar:Daro_3202 ABC transporter, transmembrane region:ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase
YP_003169405.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3201 type I secretion membrane fusion protein, HlyD
YP_003169406.1	PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: dar:Daro_3200 transcriptional regulator, LuxR family
YP_003169407.1	TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein
YP_003169408.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_3354 diguanylate cyclase/phosphodiesterase
YP_003169409.1	KEGG: dar:Daro_3353 hypothetical protein
YP_003169410.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_0706 type I secretion outer membrane protein, TolC
YP_003169411.1	PFAM: extracellular solute-binding protein family 3; KEGG: mrd:Mrad2831_4738 extracellular solute-binding protein family 3
YP_003169412.1	PFAM: cyclase/dehydrase; KEGG: gdi:GDI1944 cyclase/dehydrase protein
YP_003169413.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_003169414.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: azo:azo2067 arsenate reductase
YP_003169415.1	PFAM: CBS domain containing protein; KEGG: lch:Lcho_3486 CBS domain containing membrane protein
YP_003169416.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3466 protein of unknown function DUF214
YP_003169417.1	PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase
YP_003169418.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pfo:PflO1_5689 pyridoxamine 5'-phosphate oxidase-like, FMN-binding
YP_003169419.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_003169420.1	PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: sfu:Sfum_2866 response regulator receiver protein
YP_003169422.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce5304 hypothetical protein
YP_003169423.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3317 transcriptional regulator, LysR family
YP_003169424.1	PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_0430 transposase IS3/IS911 family protein
YP_003169425.1	KEGG: pna:Pnap_0429 integrase, catalytic region
YP_003169426.1	PFAM: WD-40 repeat protein; KEGG: pmn:PMN2A_1038 WD-40 repeat
YP_003169427.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: gvi:glr0534 hypothetical protein
YP_003169428.1	PFAM: Protein of unknown function DUF1826; KEGG: mxa:MXAN_6525 hypothetical protein
YP_003169429.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_003169430.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: pap:PSPA7_6342 hypothetical protein
YP_003169431.1	KEGG: rme:Rmet_1101 6-pyruvoyl-tetrahydropterin synthase-like protein
YP_003169432.1	TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: pfl:PFL_6184 threonyl-tRNA synthetase
YP_003169433.1	PFAM: protein of unknown function DUF37; KEGG: ace:Acel_2159 protein of unknown function DUF37
YP_003169434.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_003169435.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azo:azo0455 putative cobalmin snthesis protein
YP_003169437.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: azo:azo0248 probable DnaK suppressor protein
YP_003169438.1	PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mfa:Mfla_1231 cobalamin synthesis protein, P47K
YP_003169439.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: pfl:PFL_6181 phosphoribosyl-AMP cyclohydrolase
YP_003169440.1	KEGG: bxe:Bxe_B1776 ferric uptake regulator (FUR) family
YP_003169442.1	PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: lch:Lcho_0199 putative serine protein kinase, PrkA
YP_003169443.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003169444.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003169445.1	KEGG: nha:Nham_2789 hypothetical protein
YP_003169447.1	PFAM: Resolvase domain; KEGG: bpt:Bpet1409 transposase
YP_003169448.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003169449.1	PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein
YP_003169450.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_3012 transcriptional regulator, AbrB family
YP_003169451.1	KEGG: dar:Daro_1389 DedA
YP_003169452.1	PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3463 protein of unknown function DUF214
YP_003169453.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3462 ABC transporter related
YP_003169454.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3461 secretion protein HlyD
YP_003169455.1	PFAM: UvrD/REP helicase; KEGG: dar:Daro_3879 ATP-dependent DNA helicase Rep
YP_003169456.1	KEGG: pfl:PFL_5995 alginate regulatory protein AlgP
YP_003169457.1	PFAM: N-6 DNA methylase; KEGG: glo:Glov_2201 N-6 DNA methylase
YP_003169458.1	PFAM: protein of unknown function DUF1016; KEGG: mma:MM_2979 hypothetical protein
YP_003169459.1	KEGG: glo:Glov_2200 type I restriction-modification system specificity subunit
YP_003169460.1	KEGG: spc:Sputcn32_3528 hypothetical protein
YP_003169461.1	PFAM: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme family
YP_003169462.1	PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: glo:Glov_2197 protein of unknown function DUF450
YP_003169463.1	PFAM: polysaccharide deacetylase; KEGG: dvu:DVU0116 polysaccharide deacetylase family protein
YP_003169464.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1416 probable acetyltransferase
YP_003169465.1	PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4105 major facilitator superfamily MFS_1
YP_003169466.1	PFAM: cytochrome c class I; KEGG: dar:Daro_3877 cytochrome c, class I
YP_003169467.1	KEGG: dar:Daro_3509 putative thiol:disulphide interchange protein (periplasmic)
YP_003169468.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: dar:Daro_3510 hypothetical protein
YP_003169470.1	PFAM: PsiF repeat protein; KEGG: pap:PSPA7_5596 hypothetical protein
YP_003169471.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_003169472.1	TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: azo:azo0502 protein-Npi-phosphohistidine-sugar phosphotransferase
YP_003169473.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dar:Daro_4148 SSU ribosomal protein S30P / sigma 54 modulation protein
YP_003169474.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_003169475.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4150 ABC transporter related
YP_003169476.1	PFAM: regulatory protein RecX; KEGG: cvi:CV_1606 regulatory protein RecX
YP_003169477.1	KEGG: eba:ebA3396 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_003169478.1	KEGG: azo:azo3335 putative type 4 pilus biogenesis
YP_003169479.1	PFAM: CinA domain protein; KEGG: dar:Daro_3874 CinA, C-terminal
YP_003169480.1	PFAM: phosphatidylglycerophosphatase A; KEGG: dar:Daro_3741 phosphatidylglycerophosphatase
YP_003169481.1	KEGG: dar:Daro_3740 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein
YP_003169482.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dar:Daro_3739 NusB antitermination factor
YP_003169483.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_003169484.1	TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: eba:ebA3567 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
YP_003169485.1	PFAM: response regulator receiver; KEGG: tva:TVAG_368240 plectin, putative Pfam: Vicilin_N PROSITE: ALA_RICH GLU_RICH LYS_RICH SER_RICH
YP_003169486.1	KEGG: eba:ebA6064 probable thioredoxin-like protein
YP_003169487.1	PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0083 beta-lactamase-like
YP_003169488.1	KEGG: azo:azo0397 hypothetical protein
YP_003169489.1	PFAM: protein of unknown function DUF1289; KEGG: dar:Daro_0084 protein of unknown function DUF1289
YP_003169490.1	PFAM: pyruvate carboxyltransferase; KEGG: dar:Daro_0086 hydroxymethylglutaryl-CoA lyase
YP_003169491.1	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: dar:Daro_0089 3-methylcrotonoyl-CoA carboxylase, alpha subunit
YP_003169492.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase
YP_003169493.1	PFAM: carboxyl transferase; KEGG: dar:Daro_0092 carboxyl transferase
YP_003169494.1	PFAM: DSBA oxidoreductase; KEGG: dar:Daro_0094 DsbA oxidoreductase
YP_003169495.1	KEGG: noc:Noc_1940 hypothetical protein
YP_003169496.1	PFAM: thioesterase superfamily protein; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family
YP_003169497.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dar:Daro_0096 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal
YP_003169498.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_0097 protein of unknown function DUF6, transmembrane
YP_003169499.1	PFAM: GCN5-related N-acetyltransferase; carbonic anhydrase; KEGG: dar:Daro_0099 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant
YP_003169500.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mpt:Mpe_A3360 isovaleryl-CoA dehydrogenase
YP_003169501.1	PFAM: thioesterase superfamily protein; KEGG: azo:azo0392 hypothetical protein
YP_003169502.1	PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0103 beta-lactamase-like
YP_003169503.1	PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: dar:Daro_0104 poly(R)-hydroxyalkanoic acid synthase, class I
YP_003169504.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tbd:Tbd_1468 hypothetical protein
YP_003169505.1	PFAM: HNH endonuclease; KEGG: sbn:Sbal195_1577 HNH endonuclease
YP_003169506.1	KEGG: dar:Daro_0484 metal-dependent phosphohydrolase, HD subdomain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region
YP_003169507.1	TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dar:Daro_0486 cytidyltransferase-related
YP_003169508.1	KEGG: dar:Daro_2433 hypothetical protein
YP_003169509.1	TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: rfr:Rfer_0697 esterase/lipase/thioesterase family active site
YP_003169510.1	TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family active site
YP_003169511.1	KEGG: cau:Caur_2746 secreted hydrolase-like protein
YP_003169512.1	PFAM: protein of unknown function DUF971; KEGG: dar:Daro_4118 protein of unknown function DUF971
YP_003169513.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4117 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase
YP_003169514.1	PFAM: import inner membrane translocase subunit Tim44; KEGG: dar:Daro_4035 mitochondrial import inner membrane translocase, subunit Tim44
YP_003169515.1	KEGG: dar:Daro_4116 protein of unknown function DUF1243
YP_003169516.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_003169517.1	KEGG: dar:Daro_4114 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase
YP_003169518.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_003169519.1	KEGG: dar:Daro_4112 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit
YP_003169520.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: dar:Daro_4111 H+-transporting two-sector ATPase, delta (OSCP) subunit
YP_003169521.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dar:Daro_4110 ATP synthase F0, subunit B
YP_003169522.1	TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dar:Daro_4109 ATP synthase F0, C subunit
YP_003169523.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_003169524.1	PFAM: ATP synthase I chain; KEGG: dar:Daro_4107 ATP synthase protein I
YP_003169525.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_4106 chromosome segregation DNA-binding protein
YP_003169526.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dar:Daro_4105 chromosome segregation ATPase
YP_003169527.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tbd:Tbd_2807 glucose-inhibited division protein B
YP_003169528.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_003169529.1	TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dar:Daro_1515 aminotransferase, class V:aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_003169530.1	TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_1514 Fe-S cluster assembly protein NifU
YP_003169531.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_1513 HesB/YadR/YfhF
YP_003169532.1	TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1510 4Fe-4S ferredoxin, iron-sulfur binding
YP_003169533.1	PFAM: protein of unknown function DUF683; KEGG: dar:Daro_1509 protein of unknown function DUF683
YP_003169534.1	TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: azo:azo0558 hypothetical protein
YP_003169535.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: azo:azo0559 hypothetical sigma-E factor regulatory protein
YP_003169536.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0560 conserved hypothetical NifX protein
YP_003169537.1	functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe
YP_003169538.1	KEGG: dar:Daro_1501 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1
YP_003169539.1	PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ)
YP_003169540.1	TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: dar:Daro_1398 pyruvate carboxyltransferase
YP_003169541.1	KEGG: dar:Daro_1396 hypothetical protein
YP_003169542.1	PFAM: nitrogen fixation protein NifW; KEGG: azo:azo0548 nitrogen fixation protein NifW
YP_003169543.1	PFAM: NifZ family protein; KEGG: dar:Daro_1394 NifZ
YP_003169544.1	TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azo:azo0546 probable peptidylprolyl isomerase
YP_003169545.1	TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2036 non-ribosomal peptide synthase, amino acid adenylation domain
YP_003169546.1	KEGG: lbl:LBL_1713 DltB-related membrane protein
YP_003169547.1	KEGG: sat:SYN_01151 acyl carrier protein
YP_003169548.1	PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_2542 transcriptional regulator, XRE family
YP_003169549.1	PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family
YP_003169550.1	KEGG: xcb:XC_1522 hypothetical protein
YP_003169551.1	KEGG: ses:SARI_03320 hypothetical protein
YP_003169552.1	PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_1496 hypothetical protein
YP_003169553.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_003169554.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: eba:ebA2581 electron transport complex protein RnfG (nitrogen fixation protein RnfG
YP_003169555.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dar:Daro_1495 electron transport complex, RnfABCDGE type, D subunit
YP_003169556.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dar:Daro_1494 electron transport complex, RnfABCDGE type, C subunit
YP_003169557.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dar:Daro_1493 electron transport complex, RnfABCDGE type, B subunit
YP_003169558.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: eba:ebA2575 predicted electron transport subunit of NADH:ferredoxin oxidoreductase
YP_003169559.1	KEGG: dar:Daro_1488 PAS; TIGRFAM: PAS sensor protein; nitrogen fixation negative regulator NifL; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003169560.1	KEGG: dar:Daro_1487 helix-turn-helix, fis-type:Nif-specific regulatory protein; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase
YP_003169562.1	KEGG: rso:RSp1252 putative transcription regulator protein
YP_003169563.1	KEGG: bch:Bcen2424_1681 hypothetical protein
YP_003169564.1	KEGG: ecm:EcSMS35_4789 hypothetical protein
YP_003169565.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron
YP_003169567.1	KEGG: bcs:BCAN_B0379 hypothetical protein
YP_003169568.1	KEGG: drm:Dred_0563 hypothetical protein
YP_003169569.1	PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase
YP_003169570.1	SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein
YP_003169571.1	KEGG: cti:RALTA_p0541 hypothetical protein
YP_003169572.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein
YP_003169573.1	KEGG: gur:Gura_1489 hypothetical protein
YP_003169574.1	KEGG: sal:Sala_0530 hypothetical protein
YP_003169575.1	PFAM: protein of unknown function DUF433; KEGG: rrs:RoseRS_0695 protein of unknown function DUF433
YP_003169576.1	KEGG: rrs:RoseRS_0696 hypothetical protein
YP_003169577.1	KEGG: sal:Sala_0530 hypothetical protein
YP_003169579.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rle:RL3157 putative monooxygenase
YP_003169580.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: net:Neut_1850 glyoxalase/bleomycin resistance protein/dioxygenase
YP_003169581.1	TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: azo:azo0523 nitrogen fixation protein
YP_003169582.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: psa:PST_1305a ferredoxin-like protein
YP_003169583.1	TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: dar:Daro_1452 nitrogenase-associated protein
YP_003169584.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dar:Daro_1451 beta-lactamase-like:flavodoxin/nitric oxide synthase
YP_003169585.1	PFAM: ferredoxin; KEGG: dar:Daro_1450 ferredoxin
YP_003169586.1	PFAM: ferredoxin; KEGG: dar:Daro_1449 ferredoxin
YP_003169587.1	KEGG: dar:Daro_1447 ADP-ribosylation/crystallin J1; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1
YP_003169588.1	KEGG: bxe:Bxe_B0809 hypothetical protein
YP_003169589.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_003169590.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_003169591.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: psa:PST_2653 Na(+)-translocating NADH-quinone reductase subunit C
YP_003169592.1	Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm
YP_003169593.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E
YP_003169594.1	uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm
YP_003169595.1	KEGG: mca:MCA2383 hypothetical protein
YP_003169596.1	KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_003169597.1	PFAM: response regulator receiver; KEGG: rru:Rru_A0659 response regulator receiver modulated diguanylate cyclase/phosphodiesterase
YP_003169598.1	KEGG: dar:Daro_1418 hypothetical protein
YP_003169599.1	KEGG: eba:ebB112 hypothetical protein
YP_003169600.1	PFAM: PilT protein domain protein; KEGG: eba:ebB111 predicted nucleic acid-binding protein,contains PIN domain
YP_003169601.1	PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: mpt:Mpe_A2028 cold-shock DNA-binding domain
YP_003169603.1	PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: dar:Daro_1416 hypothetical protein
YP_003169604.1	KEGG: dar:Daro_1415 nitrogenase iron protein subunit NifH; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein
YP_003169605.1	KEGG: dar:Daro_1414 nitrogenase molybdenum-iron protein alpha chain:nitrogenase component I, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1
YP_003169606.1	KEGG: dar:Daro_1413 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1
YP_003169607.1	TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: azo:azo0541 nitrogen fixation protein [nifT]
YP_003169608.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo0542 FdxN protein
YP_003169609.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dar:Daro_1410 dinitrogenase iron-molybdenum cofactor biosynthesis
YP_003169610.1	KEGG: dar:Daro_1407 hypothetical protein
YP_003169611.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_2037 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_003169612.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo3838 putative molybdenum transport system permease protein
YP_003169613.1	KEGG: pna:Pnap_2041 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_003169614.1	TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bmu:Bmul_4495 peroxiredoxin
YP_003169615.1	TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:PflO1_2924 pyridine nucleotide-disulphide oxidoreductase, class-II, active site
YP_003169616.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: syx:SynWH7803_1732 sulfate permease, MFS superfamily
YP_003169618.1	PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_4101 response regulator receiver:tetratricopeptide TPR_4
YP_003169619.1	PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ava:Ava_4466 transcriptional regulator, LysR family
YP_003169620.1	KEGG: bxe:Bxe_B0809 hypothetical protein
YP_003169621.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4099 ABC transporter related
YP_003169622.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related
YP_003169623.1	PFAM: inner-membrane translocator; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related
YP_003169624.1	PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4096 extracellular ligand-binding receptor
YP_003169625.1	PFAM: protein of unknown function DUF81; KEGG: sml:Smlt4655 putative transmembrane protein
YP_003169626.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azo:azo2633 probable trans-aconitate 2-methyltransferase
YP_003169627.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_003169628.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: dar:Daro_4201 protein translocase subunit YidC
YP_003169629.1	PFAM: protein of unknown function DUF37; KEGG: azo:azo3990 hypothetical protein
YP_003169630.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dar:Daro_4203 ribonuclease P protein