-- dump date 20120504_140643 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 522306000001 SEQ_END SEQ_END NC_013190.1 42325 42325 DR NC_013190.1; contig end 42325..42325 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 522306000002 SEQ_END SEQ_END NC_013191.1 37695 37695 DR NC_013191.1; contig end 37695..37695 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 522306000003 SEQ_END SEQ_END NC_013193.1 167595 167595 DR NC_013193.1; contig end 167595..167595 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 522306000004 SEQ_END SEQ_END NC_013194.1 5058518 5058518 DR NC_013194.1; contig end 5058518..5058518 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 YP_003162849.1 CDS CAP2UW1_4524 NC_013190.1 8 568 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein; resolvase 8..568 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401825 YP_003162850.1 CDS CAP2UW1_4525 NC_013190.1 571 3537 D PFAM: transposase Tn3 family protein; KEGG: asa:ASA_P4G106 TnpA transposase; transposase Tn3 family protein 571..3537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401782 YP_003162851.1 CDS CAP2UW1_4526 NC_013190.1 3604 4740 D KEGG: eba:p1B6 transposase; transposase 3604..4740 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401783 YP_003162852.1 CDS CAP2UW1_4527 NC_013190.1 4730 5482 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p1B4 IstB transposition helper protein; IstB domain protein ATP-binding protein 4730..5482 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401784 YP_003162853.1 CDS CAP2UW1_4528 NC_013190.1 5479 5691 D KEGG: eba:p1D1 hypothetical protein; hypothetical protein 5479..5691 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401785 YP_003162854.1 CDS CAP2UW1_4529 NC_013190.1 6302 6565 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein; addiction module antitoxin, RelB/DinJ family 6302..6565 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401786 YP_003162855.1 CDS CAP2UW1_4530 NC_013190.1 6552 6833 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: psp:PSPPH_B0055 addiction module toxin, RelE/StbE family; addiction module toxin, RelE/StbE family 6552..6833 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401787 YP_003162856.1 CDS CAP2UW1_4531 NC_013190.1 6972 7163 D KEGG: psp:PSPPH_B0054 TnpA repressor protein; hypothetical protein 6972..7163 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401788 YP_003162857.1 CDS CAP2UW1_4533 NC_013190.1 7412 7837 R KEGG: dar:Daro_2615 hypothetical protein; hypothetical protein complement(7412..7837) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401790 YP_003162858.1 CDS CAP2UW1_4534 NC_013190.1 8157 9395 R KEGG: tbd:Tbd_0144 hypothetical protein; hypothetical protein complement(8157..9395) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401791 YP_003162859.1 CDS CAP2UW1_4535 NC_013190.1 9392 9694 R KEGG: bja:blr4113 hypothetical protein; hypothetical protein complement(9392..9694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401792 YP_003162860.1 CDS CAP2UW1_4536 NC_013190.1 9687 12770 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpb:RPB_4294 heavy metal efflux pump CzcA; heavy metal efflux pump, CzcA family complement(9687..12770) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401793 YP_003162861.1 CDS CAP2UW1_4537 NC_013190.1 12770 13897 R TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: rpt:Rpal_4973 efflux transporter RND family, MFP subunit; efflux transporter RND family, MFP subunit complement(12770..13897) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401794 YP_003162862.1 CDS CAP2UW1_4538 NC_013190.1 14734 15852 R PFAM: high-affinity nickel-transporter; KEGG: bvi:Bcep1808_7462 high-affinity nickel-transporter; high-affinity nickel-transporter complement(14734..15852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401795 YP_003162863.1 CDS CAP2UW1_4539 NC_013190.1 15863 16132 R PFAM: protein of unknown function DUF156; KEGG: vei:Veis_2756 protein of unknown function DUF156; hypothetical protein complement(15863..16132) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401796 YP_003162864.1 CDS CAP2UW1_4540 NC_013190.1 16831 17493 R PFAM: Resolvase domain; KEGG: amr:AM1_H0028 resolvase, N-terminal domain; resolvase complement(16831..17493) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401797 YP_003162865.1 CDS CAP2UW1_4542 NC_013190.1 18281 18712 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: dar:Daro_2256 MerR family transcriptional regulator; Cd(II)/Pb(II)-responsive transcriptional regulator complement(18281..18712) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401799 YP_003162866.1 CDS CAP2UW1_4543 NC_013190.1 18737 18910 R hypothetical protein complement(18737..18910) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401800 YP_003162867.1 CDS CAP2UW1_4544 NC_013190.1 19019 21082 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2257 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase; ATPase P 19019..21082 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401801 YP_003162868.1 CDS CAP2UW1_4545 NC_013190.1 21079 21648 D KEGG: dar:Daro_2621 hypothetical protein; hypothetical protein 21079..21648 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401802 YP_003162869.1 CDS CAP2UW1_4546 NC_013190.1 21914 23203 D PFAM: outer membrane efflux protein; KEGG: dar:Daro_2628 outer membrane efflux protein; outer membrane efflux protein 21914..23203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401803 YP_003162870.1 CDS CAP2UW1_4547 NC_013190.1 23268 24599 D TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: dar:Daro_2627 secretion protein HlyD; efflux transporter RND family, MFP subunit 23268..24599 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401804 YP_003162871.1 CDS CAP2UW1_4548 NC_013190.1 24610 27705 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2626 heavy metal efflux pump CzcA; heavy metal efflux pump, CzcA family 24610..27705 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401805 YP_003162872.1 CDS CAP2UW1_4549 NC_013190.1 27717 28142 D KEGG: dar:Daro_2615 hypothetical protein; hypothetical protein 27717..28142 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401806 YP_003162873.1 CDS CAP2UW1_4550 NC_013190.1 28182 28508 D PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_2625 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 28182..28508 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401807 YP_003162874.1 CDS CAP2UW1_4551 NC_013190.1 28495 29046 D hypothetical protein 28495..29046 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401808 YP_003162875.1 CDS CAP2UW1_4553 NC_013190.1 29644 30066 D KEGG: sus:acid_1919 protein of unknown function DUF132; hypothetical protein 29644..30066 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401810 YP_003162876.1 CDS CAP2UW1_4554 NC_013190.1 30063 30314 D KEGG: sus:acid_1920 hypothetical protein; hypothetical protein 30063..30314 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401811 YP_003162877.1 CDS CAP2UW1_4555 NC_013190.1 30328 31296 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: nmu:Nmul_B2807 phage integrase; integrase 30328..31296 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401812 YP_003162878.1 CDS CAP2UW1_4556 NC_013190.1 31414 31695 R KEGG: vei:Veis_4348 hypothetical protein; hypothetical protein complement(31414..31695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401813 YP_003162879.1 CDS CAP2UW1_4557 NC_013190.1 31692 32030 R PFAM: protein of unknown function DUF891; KEGG: eba:ebB4 hypothetical protein; hypothetical protein complement(31692..32030) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401814 YP_003162880.1 CDS CAP2UW1_4558 NC_013190.1 32297 32950 D PFAM: cobyrinic acid ac-diamide synthase; KEGG: xcv:XCVb0021 plasmid partitioning-family protein; cobyrinic acid ac-diamide synthase 32297..32950 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401815 YP_003162881.1 CDS CAP2UW1_4559 NC_013190.1 32943 33173 D hypothetical protein 32943..33173 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401816 YP_003162882.1 CDS CAP2UW1_4560 NC_013190.1 33209 34279 R KEGG: rsq:Rsph17025_4401 plasmid replication initiator protein-like protein; plasmid replication initiator protein-like protein complement(33209..34279) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401817 YP_003162883.1 CDS CAP2UW1_4561 NC_013190.1 34872 35759 D hypothetical protein 34872..35759 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401818 YP_003162884.1 CDS CAP2UW1_4562 NC_013190.1 36144 36791 D KEGG: ajs:Ajs_4307 hypothetical protein; hypothetical protein 36144..36791 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401819 YP_003162885.1 CDS CAP2UW1_4564 NC_013190.1 37818 38189 D KEGG: cti:RALTA_p0592 transposase, IS21 family; transposase, IS21 family 37818..38189 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401821 YP_003162886.1 CDS CAP2UW1_4565 NC_013190.1 38198 38638 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; transcription regulator MerR DNA binding; KEGG: shn:Shewana3_4323 MerR family transcriptional regulator; Cd(II)/Pb(II)-responsive transcriptional regulator complement(38198..38638) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401822 YP_003162887.1 CDS CAP2UW1_4566 NC_013190.1 38722 41127 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: haloacid dehalogenase; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_3462 heavy metal translocating P-type ATPase; ATPase P 38722..41127 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401823 YP_003162888.1 CDS CAP2UW1_4567 NC_013190.1 41124 42203 D TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase PA-phosphatase related; peptidase A8 signal peptidase II; KEGG: shn:Shewana3_4320 Signal peptidase II. Aspartic peptidase. MEROPS family A08; lipoprotein signal peptidase 41124..42203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401824 YP_003162889.1 CDS CAP2UW1_4475 NC_013191.1 150 716 D PFAM: Resolvase domain; KEGG: xac:XACb0061 invertase recombinase-like protein; Resolvase domain protein 150..716 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401875 YP_003162890.1 CDS CAP2UW1_4476 NC_013191.1 920 1285 R KEGG: sme:SMa2167 hypothetical protein; hypothetical protein complement(920..1285) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401827 YP_003162891.1 CDS CAP2UW1_4477 NC_013191.1 1282 1632 R KEGG: mag:amb3185 hypothetical protein; hypothetical protein complement(1282..1632) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401828 YP_003162892.1 CDS CAP2UW1_4478 NC_013191.1 1857 2474 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: net:Neut_2584 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1857..2474 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401829 YP_003162893.1 CDS CAP2UW1_4479 NC_013191.1 2471 2740 D KEGG: net:Neut_2585 hypothetical protein; hypothetical protein 2471..2740 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401830 YP_003162894.1 CDS CAP2UW1_4480 NC_013191.1 2826 3659 D KEGG: pna:Pnap_2499 hypothetical protein; hypothetical protein 2826..3659 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401831 YP_003162895.1 CDS CAP2UW1_4483 NC_013191.1 4867 5124 D KEGG: rpe:RPE_1775 hypothetical protein; hypothetical protein 4867..5124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401867 YP_003162896.1 CDS CAP2UW1_4484 NC_013191.1 5125 5412 R TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mfa:Mfla_1070 integration host factor, beta subunit; integration host factor, beta subunit complement(5125..5412) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401833 YP_003162897.1 CDS CAP2UW1_4485 NC_013191.1 5666 6313 D KEGG: ajs:Ajs_4307 hypothetical protein; hypothetical protein 5666..6313 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401834 YP_003162898.1 CDS CAP2UW1_4487 NC_013191.1 7536 8684 R KEGG: ptr:467889 zinc finger protein 597; hypothetical protein complement(7536..8684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401868 YP_003162899.1 CDS CAP2UW1_4488 NC_013191.1 8763 9320 R KEGG: ddi:DDBDRAFT_0204634 hypothetical protein; hypothetical protein complement(8763..9320) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401836 YP_003162900.1 CDS CAP2UW1_4492 NC_013191.1 11020 11196 D hypothetical protein 11020..11196 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401871 YP_003162901.1 CDS CAP2UW1_4494 NC_013191.1 11755 12372 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: reu:Reut_D6519 resolvase; Resolvase domain protein complement(11755..12372) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401872 YP_003162902.1 CDS CAP2UW1_4495 NC_013191.1 12565 12858 D PFAM: SpoVT/AbrB domain protein; KEGG: abo:ABO_2076 hypothetical protein; SpoVT/AbrB domain protein 12565..12858 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401839 YP_003162903.1 CDS CAP2UW1_4496 NC_013191.1 12861 13262 D PFAM: PilT protein domain protein; KEGG: dac:Daci_3757 PilT protein domain protein; PilT protein domain protein 12861..13262 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401840 YP_003162904.1 CDS CAP2UW1_4497 NC_013191.1 14126 15568 R KEGG: pde:Pden_0112 hypothetical protein; hypothetical protein complement(14126..15568) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401841 YP_003162905.1 CDS CAP2UW1_4498 NC_013191.1 15565 16500 R KEGG: pde:Pden_0111 hypothetical protein; hypothetical protein complement(15565..16500) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401842 YP_003162906.1 CDS CAP2UW1_4499 NC_013191.1 16549 17004 R KEGG: pol:Bpro_1540 hypothetical protein; hypothetical protein complement(16549..17004) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401843 YP_003162907.1 CDS CAP2UW1_4500 NC_013191.1 17004 18263 R KEGG: bpl:BURPS1106A_0094 hypothetical protein; hypothetical protein complement(17004..18263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401844 YP_003162908.1 CDS CAP2UW1_4501 NC_013191.1 18322 18486 R hypothetical protein complement(18322..18486) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401845 YP_003162909.1 CDS CAP2UW1_4502 NC_013191.1 18659 18985 D PFAM: helix-turn-helix domain protein; KEGG: bpl:BURPS1106A_0095 transcriptional regulator, XRE family; XRE family transcriptional regulator 18659..18985 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401846 YP_003162910.1 CDS CAP2UW1_4503 NC_013191.1 19021 19179 D KEGG: bpl:BURPS1106A_0096 hypothetical protein; hypothetical protein 19021..19179 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401847 YP_003162911.1 CDS CAP2UW1_4504 NC_013191.1 19176 22142 R PFAM: transposase Tn3 family protein; KEGG: asa:ASA_P4G106 TnpA transposase; transposase Tn3 family protein complement(19176..22142) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401848 YP_003162912.1 CDS CAP2UW1_4505 NC_013191.1 22145 22705 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: rme:Rmet_6187 resolvase-like protein; Resolvase domain protein complement(22145..22705) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401849 YP_003162913.1 CDS CAP2UW1_4506 NC_013191.1 22835 23914 R TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase PA-phosphatase related; peptidase A8 signal peptidase II; KEGG: shn:Shewana3_4320 Signal peptidase II. Aspartic peptidase. MEROPS family A08; lipoprotein signal peptidase complement(22835..23914) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401850 YP_003162914.1 CDS CAP2UW1_4507 NC_013191.1 23911 26316 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sfr:Sfri_3462 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(23911..26316) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401851 YP_003162915.1 CDS CAP2UW1_4508 NC_013191.1 26400 26840 D TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sfr:Sfri_3461 transcriptional regulator, MerR family protein; transcriptional regulator, MerR family 26400..26840 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401852 YP_003162916.1 CDS CAP2UW1_4509 NC_013191.1 26994 27596 D KEGG: bpl:BURPS1106A_0096 hypothetical protein; hypothetical protein 26994..27596 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401853 YP_003162917.1 CDS CAP2UW1_4510 NC_013191.1 27764 28084 D hypothetical protein 27764..28084 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401854 YP_003162918.1 CDS CAP2UW1_4512 NC_013191.1 28931 29128 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(28931..29128) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401873 YP_003162919.1 CDS CAP2UW1_4513 NC_013191.1 29125 29919 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(29125..29919) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401856 YP_003162920.1 CDS CAP2UW1_4514 NC_013191.1 29922 31244 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; Integrase catalytic region complement(29922..31244) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401857 YP_003162921.1 CDS CAP2UW1_4515 NC_013191.1 31374 31898 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(31374..31898) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401858 YP_003162922.1 CDS CAP2UW1_4516 NC_013191.1 32580 33185 D PFAM: ExsB family protein; KEGG: mlo:mll6423 hypothetical protein; ExsB family protein 32580..33185 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401859 YP_003162923.1 CDS CAP2UW1_4517 NC_013191.1 33163 33834 D KEGG: sat:SYN_00273 nitroreductase family protein; hypothetical protein 33163..33834 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401860 YP_003162924.1 CDS CAP2UW1_4518 NC_013191.1 33781 34644 R KEGG: mlo:mll6426 hypothetical protein; hypothetical protein complement(33781..34644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401861 YP_003162925.1 CDS CAP2UW1_4519 NC_013191.1 34641 35318 R KEGG: reu:Reut_D6518 phage DNA methylase; phage DNA methylase complement(34641..35318) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401862 YP_003162926.1 CDS CAP2UW1_4521 NC_013191.1 36471 37007 R KEGG: pna:Pnap_4763 hypothetical protein; hypothetical protein complement(36471..37007) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401874 YP_003162927.1 CDS CAP2UW1_4522 NC_013191.1 37019 37414 R KEGG: xcb:XC_2599 hypothetical protein; hypothetical protein complement(37019..37414) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401864 YP_003162928.1 CDS CAP2UW1_4523 NC_013191.1 37411 37662 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: xcb:XC_2600 hypothetical protein; transcriptional regulator, AbrB family complement(37411..37662) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401865 YP_003165149.1 CDS CAP2UW1_4568 NC_013193.1 1001 1258 D hypothetical protein 1001..1258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402109 YP_003165150.1 CDS CAP2UW1_4569 NC_013193.1 1323 1445 D hypothetical protein 1323..1445 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401942 YP_003165151.1 CDS CAP2UW1_4570 NC_013193.1 1485 2105 D hypothetical protein 1485..2105 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401943 YP_003165152.1 CDS CAP2UW1_4571 NC_013193.1 2301 2894 D hypothetical protein 2301..2894 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401944 YP_003165153.1 CDS CAP2UW1_4572 NC_013193.1 2891 3064 D hypothetical protein 2891..3064 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401945 YP_003165154.1 CDS CAP2UW1_4573 NC_013193.1 3143 7102 D hypothetical protein 3143..7102 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401946 YP_003165155.1 CDS CAP2UW1_4574 NC_013193.1 7542 8204 R hypothetical protein complement(7542..8204) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401947 YP_003165156.1 CDS CAP2UW1_4575 NC_013193.1 8262 8783 R hypothetical protein complement(8262..8783) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401948 YP_003165157.1 CDS CAP2UW1_4576 NC_013193.1 8784 9083 R hypothetical protein complement(8784..9083) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401949 YP_003165158.1 CDS CAP2UW1_4577 NC_013193.1 9495 9851 R hypothetical protein complement(9495..9851) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401950 YP_003165159.1 CDS CAP2UW1_4578 NC_013193.1 9864 10844 R hypothetical protein complement(9864..10844) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401951 YP_003165160.1 CDS CAP2UW1_4580 NC_013193.1 11521 11802 R hypothetical protein complement(11521..11802) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402097 YP_003165161.1 CDS CAP2UW1_4581 NC_013193.1 11802 12143 R hypothetical protein complement(11802..12143) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401953 YP_003165162.1 CDS CAP2UW1_4582 NC_013193.1 12467 13042 R hypothetical protein complement(12467..13042) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401954 YP_003165163.1 CDS CAP2UW1_4583 NC_013193.1 13310 13576 D hypothetical protein 13310..13576 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401955 YP_003165164.1 CDS CAP2UW1_4584 NC_013193.1 13573 14001 D hypothetical protein 13573..14001 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401956 YP_003165165.1 CDS CAP2UW1_4585 NC_013193.1 14029 14151 D hypothetical protein 14029..14151 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401957 YP_003165166.1 CDS CAP2UW1_4586 NC_013193.1 14243 14428 R hypothetical protein complement(14243..14428) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401958 YP_003165167.1 CDS CAP2UW1_4587 NC_013193.1 14660 17005 R hypothetical protein complement(14660..17005) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401959 YP_003165168.1 CDS CAP2UW1_4588 NC_013193.1 16998 18158 R hypothetical protein complement(16998..18158) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401960 YP_003165169.1 CDS CAP2UW1_4589 NC_013193.1 18330 18599 D hypothetical protein 18330..18599 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401961 YP_003165170.1 CDS CAP2UW1_4590 NC_013193.1 18600 18755 D hypothetical protein 18600..18755 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401962 YP_003165171.1 CDS CAP2UW1_4591 NC_013193.1 18964 22257 R hypothetical protein complement(18964..22257) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401963 YP_003165172.1 CDS CAP2UW1_4592 NC_013193.1 22270 25227 R hypothetical protein complement(22270..25227) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401964 YP_003165173.1 CDS CAP2UW1_4593 NC_013193.1 25315 27051 R hypothetical protein complement(25315..27051) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401965 YP_003165174.1 CDS CAP2UW1_4594 NC_013193.1 27055 27534 R hypothetical protein complement(27055..27534) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401966 YP_003165175.1 CDS CAP2UW1_4595 NC_013193.1 27557 30589 R hypothetical protein complement(27557..30589) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401967 YP_003165176.1 CDS CAP2UW1_4596 NC_013193.1 31062 32249 D hypothetical protein 31062..32249 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401968 YP_003165177.1 CDS CAP2UW1_4597 NC_013193.1 32249 34039 D hypothetical protein 32249..34039 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401969 YP_003165178.1 CDS CAP2UW1_4598 NC_013193.1 34036 37182 D hypothetical protein 34036..37182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401970 YP_003165179.1 CDS CAP2UW1_4599 NC_013193.1 37898 38206 D hypothetical protein 37898..38206 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401971 YP_003165180.1 CDS CAP2UW1_4600 NC_013193.1 38385 38675 D hypothetical protein 38385..38675 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401972 YP_003165181.1 CDS CAP2UW1_4601 NC_013193.1 38918 39910 R hypothetical protein complement(38918..39910) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401973 YP_003165182.1 CDS CAP2UW1_4602 NC_013193.1 39897 40070 R hypothetical protein complement(39897..40070) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401974 YP_003165183.1 CDS CAP2UW1_4603 NC_013193.1 40197 40511 R hypothetical protein complement(40197..40511) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401975 YP_003165184.1 CDS CAP2UW1_4604 NC_013193.1 40501 40926 R hypothetical protein complement(40501..40926) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401976 YP_003165185.1 CDS CAP2UW1_4605 NC_013193.1 41365 41925 D hypothetical protein 41365..41925 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401977 YP_003165186.1 CDS CAP2UW1_4606 NC_013193.1 41922 43115 D hypothetical protein 41922..43115 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401978 YP_003165187.1 CDS CAP2UW1_4607 NC_013193.1 43324 43896 D hypothetical protein 43324..43896 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401979 YP_003165188.1 CDS CAP2UW1_4608 NC_013193.1 43896 44306 D hypothetical protein 43896..44306 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401980 YP_003165189.1 CDS CAP2UW1_4610 NC_013193.1 44819 45730 R hypothetical protein complement(44819..45730) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402098 YP_003165190.1 CDS CAP2UW1_4611 NC_013193.1 46640 47599 R hypothetical protein complement(46640..47599) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401982 YP_003165191.1 CDS CAP2UW1_4612 NC_013193.1 47611 48318 R hypothetical protein complement(47611..48318) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401983 YP_003165192.1 CDS CAP2UW1_4613 NC_013193.1 49344 49664 D hypothetical protein 49344..49664 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401984 YP_003165193.1 CDS CAP2UW1_4614 NC_013193.1 49879 50184 D hypothetical protein 49879..50184 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401985 YP_003165194.1 CDS CAP2UW1_4615 NC_013193.1 50189 50971 D hypothetical protein 50189..50971 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401986 YP_003165195.1 CDS CAP2UW1_4616 NC_013193.1 50968 52008 D hypothetical protein 50968..52008 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401987 YP_003165196.1 CDS CAP2UW1_4617 NC_013193.1 52165 53007 D hypothetical protein 52165..53007 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401988 YP_003165197.1 CDS CAP2UW1_4618 NC_013193.1 53153 53497 D hypothetical protein 53153..53497 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401989 YP_003165198.1 CDS CAP2UW1_4619 NC_013193.1 53869 55179 D hypothetical protein 53869..55179 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401990 YP_003165199.1 CDS CAP2UW1_4620 NC_013193.1 55167 56279 D hypothetical protein 55167..56279 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401991 YP_003165200.1 CDS CAP2UW1_4621 NC_013193.1 56285 57295 D hypothetical protein 56285..57295 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401992 YP_003165201.1 CDS CAP2UW1_4622 NC_013193.1 57298 58014 D hypothetical protein 57298..58014 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401993 YP_003165202.1 CDS CAP2UW1_4623 NC_013193.1 57998 58630 R hypothetical protein complement(57998..58630) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401994 YP_003165203.1 CDS CAP2UW1_4625 NC_013193.1 59550 61628 R hypothetical protein complement(59550..61628) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402099 YP_003165204.1 CDS CAP2UW1_4626 NC_013193.1 61625 61909 R hypothetical protein complement(61625..61909) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401996 YP_003165205.1 CDS CAP2UW1_4627 NC_013193.1 61906 62373 R hypothetical protein complement(61906..62373) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401997 YP_003165206.1 CDS CAP2UW1_4629 NC_013193.1 63683 64444 D hypothetical protein 63683..64444 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402100 YP_003165207.1 CDS CAP2UW1_4630 NC_013193.1 64441 64683 D hypothetical protein 64441..64683 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8401999 YP_003165208.1 CDS CAP2UW1_4631 NC_013193.1 64988 67078 D hypothetical protein 64988..67078 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402000 YP_003165209.1 CDS CAP2UW1_4632 NC_013193.1 67668 68600 R hypothetical protein complement(67668..68600) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402001 YP_003165210.1 CDS CAP2UW1_4633 NC_013193.1 68700 68837 R hypothetical protein complement(68700..68837) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402002 YP_003165211.1 CDS CAP2UW1_4634 NC_013193.1 69238 70026 R hypothetical protein complement(69238..70026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402003 YP_003165212.1 CDS CAP2UW1_4635 NC_013193.1 70081 71619 R hypothetical protein complement(70081..71619) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402004 YP_003165213.1 CDS CAP2UW1_4636 NC_013193.1 72100 72537 R conjugal transfer protein TraM complement(72100..72537) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402005 YP_003165214.1 CDS CAP2UW1_4637 NC_013193.1 72537 73262 R conjugal transfer protein TraL complement(72537..73262) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402006 YP_003165215.1 CDS CAP2UW1_4638 NC_013193.1 73262 73660 R hypothetical protein complement(73262..73660) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402007 YP_003165216.1 CDS CAP2UW1_4639 NC_013193.1 74005 74376 D conjugal transfer relaxosome component TraJ 74005..74376 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402008 YP_003165217.1 CDS CAP2UW1_4640 NC_013193.1 74411 76636 D conjugal transfer relaxase TraI 74411..76636 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402009 YP_003165218.1 CDS CAP2UW1_4641 NC_013193.1 76633 78543 D type IV secretion system VirD4 family; conjugal transfer coupling protein TraG 76633..78543 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402010 YP_003165219.1 CDS CAP2UW1_4642 NC_013193.1 78540 79076 D conjugal transfer peptidase TraF 78540..79076 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402011 YP_003165220.1 CDS CAP2UW1_4643 NC_013193.1 79120 79407 D hypothetical protein 79120..79407 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402012 YP_003165221.1 CDS CAP2UW1_4644 NC_013193.1 79413 82124 D hypothetical protein 79413..82124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402013 YP_003165222.1 CDS CAP2UW1_4646 NC_013193.1 83943 84335 D hypothetical protein 83943..84335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402101 YP_003165223.1 CDS CAP2UW1_4647 NC_013193.1 84441 84728 D hypothetical protein 84441..84728 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402015 YP_003165224.1 CDS CAP2UW1_4648 NC_013193.1 84738 86045 R hypothetical protein complement(84738..86045) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402016 YP_003165225.1 CDS CAP2UW1_4649 NC_013193.1 86042 86401 R hypothetical protein complement(86042..86401) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402017 YP_003165226.1 CDS CAP2UW1_4650 NC_013193.1 86689 86931 R hypothetical protein complement(86689..86931) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402018 YP_003165227.1 CDS CAP2UW1_4652 NC_013193.1 87600 89183 R hypothetical protein complement(87600..89183) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402102 YP_003165228.1 CDS CAP2UW1_4654 NC_013193.1 90397 93531 R hypothetical protein complement(90397..93531) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402103 YP_003165229.1 CDS CAP2UW1_4655 NC_013193.1 93556 95184 R hypothetical protein complement(93556..95184) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402021 YP_003165230.1 CDS CAP2UW1_4656 NC_013193.1 95181 96452 R hypothetical protein complement(95181..96452) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402022 YP_003165231.1 CDS CAP2UW1_4657 NC_013193.1 96531 96875 R hypothetical protein complement(96531..96875) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402023 YP_003165232.1 CDS CAP2UW1_4658 NC_013193.1 96894 97334 R hypothetical protein complement(96894..97334) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402024 YP_003165233.1 CDS CAP2UW1_4659 NC_013193.1 97452 97712 D hypothetical protein 97452..97712 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402025 YP_003165234.1 CDS CAP2UW1_4660 NC_013193.1 97858 98391 D hypothetical protein 97858..98391 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402026 YP_003165235.1 CDS CAP2UW1_4661 NC_013193.1 98521 99846 D hypothetical protein 98521..99846 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402027 YP_003165236.1 CDS CAP2UW1_4662 NC_013193.1 99849 100643 D hypothetical protein 99849..100643 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402028 YP_003165237.1 CDS CAP2UW1_4663 NC_013193.1 100640 100843 D hypothetical protein 100640..100843 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402029 YP_003165238.1 CDS CAP2UW1_4664 NC_013193.1 100821 101867 R hypothetical protein complement(100821..101867) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402030 YP_003165239.1 CDS CAP2UW1_4665 NC_013193.1 102180 102572 D hypothetical protein 102180..102572 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402031 YP_003165240.1 CDS CAP2UW1_4666 NC_013193.1 102678 102965 D hypothetical protein 102678..102965 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402032 YP_003165241.1 CDS CAP2UW1_4667 NC_013193.1 102975 103160 R hypothetical protein complement(102975..103160) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402033 YP_003165242.1 CDS CAP2UW1_4668 NC_013193.1 103253 104836 R hypothetical protein complement(103253..104836) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402034 YP_003165243.1 CDS CAP2UW1_4669 NC_013193.1 104919 105173 D hypothetical protein 104919..105173 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402035 YP_003165244.1 CDS CAP2UW1_4670 NC_013193.1 105494 105754 R hypothetical protein complement(105494..105754) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402036 YP_003165245.1 CDS CAP2UW1_4671 NC_013193.1 105944 107302 D hypothetical protein 105944..107302 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402037 YP_003165246.1 CDS CAP2UW1_4674 NC_013193.1 108857 109732 R hypothetical protein complement(108857..109732) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402105 YP_003165247.1 CDS CAP2UW1_4675 NC_013193.1 109729 110604 R hypothetical protein complement(109729..110604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402039 YP_003165248.1 CDS CAP2UW1_4676 NC_013193.1 110700 111698 R hypothetical protein complement(110700..111698) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402040 YP_003165249.1 CDS CAP2UW1_4677 NC_013193.1 111969 112397 R hypothetical protein complement(111969..112397) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402041 YP_003165250.1 CDS CAP2UW1_4678 NC_013193.1 112410 112793 R hypothetical protein complement(112410..112793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402042 YP_003165251.1 CDS CAP2UW1_4679 NC_013193.1 112819 115938 R hypothetical protein complement(112819..115938) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402043 YP_003165252.1 CDS CAP2UW1_4680 NC_013193.1 115951 116973 R hypothetical protein complement(115951..116973) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402044 YP_003165253.1 CDS CAP2UW1_4681 NC_013193.1 116970 117524 R hypothetical protein complement(116970..117524) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402045 YP_003165254.1 CDS CAP2UW1_4682 NC_013193.1 117536 118834 R hypothetical protein complement(117536..118834) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402046 YP_003165255.1 CDS CAP2UW1_4683 NC_013193.1 118969 119325 R hypothetical protein complement(118969..119325) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402047 YP_003165256.1 CDS CAP2UW1_4684 NC_013193.1 119339 119437 R hypothetical protein complement(119339..119437) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402048 YP_003165257.1 CDS CAP2UW1_4685 NC_013193.1 119484 119921 R hypothetical protein complement(119484..119921) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402049 YP_003165258.1 CDS CAP2UW1_4686 NC_013193.1 119992 120483 R hypothetical protein complement(119992..120483) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402050 YP_003165259.1 CDS CAP2UW1_4687 NC_013193.1 120504 121106 R hypothetical protein complement(120504..121106) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402051 YP_003165260.1 CDS CAP2UW1_4688 NC_013193.1 121228 121566 R hypothetical protein complement(121228..121566) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402052 YP_003165261.1 CDS CAP2UW1_4689 NC_013193.1 121563 121907 R hypothetical protein complement(121563..121907) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402053 YP_003165262.1 CDS CAP2UW1_4690 NC_013193.1 121904 124150 R hypothetical protein complement(121904..124150) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402054 YP_003165263.1 CDS CAP2UW1_4691 NC_013193.1 124240 124578 D hypothetical protein 124240..124578 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402055 YP_003165264.1 CDS CAP2UW1_4692 NC_013193.1 124595 125071 D hypothetical protein 124595..125071 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402056 YP_003165265.1 CDS CAP2UW1_4693 NC_013193.1 125367 126380 R hypothetical protein complement(125367..126380) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402057 YP_003165266.1 CDS CAP2UW1_4694 NC_013193.1 126373 127347 R hypothetical protein complement(126373..127347) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402058 YP_003165267.1 CDS CAP2UW1_4695 NC_013193.1 127344 128300 R hypothetical protein complement(127344..128300) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402059 YP_003165268.1 CDS CAP2UW1_4696 NC_013193.1 128596 130911 R hypothetical protein complement(128596..130911) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402060 YP_003165269.1 CDS CAP2UW1_4697 NC_013193.1 130916 131578 R hypothetical protein complement(130916..131578) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402061 YP_003165270.1 CDS CAP2UW1_4698 NC_013193.1 131578 131838 R hypothetical protein complement(131578..131838) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402062 YP_003165271.1 CDS CAP2UW1_4699 NC_013193.1 131825 132010 R hypothetical protein complement(131825..132010) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402063 YP_003165272.1 CDS CAP2UW1_4700 NC_013193.1 132033 132416 R hypothetical protein complement(132033..132416) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402064 YP_003165273.1 CDS CAP2UW1_4701 NC_013193.1 132590 133027 R hypothetical protein complement(132590..133027) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402065 YP_003165274.1 CDS CAP2UW1_4702 NC_013193.1 133154 133597 R hypothetical protein complement(133154..133597) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402066 YP_003165275.1 CDS CAP2UW1_4703 NC_013193.1 133718 134185 R hypothetical protein complement(133718..134185) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402067 YP_003165276.1 CDS CAP2UW1_4704 NC_013193.1 134217 137321 R hypothetical protein complement(134217..137321) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402068 YP_003165277.1 CDS CAP2UW1_4705 NC_013193.1 137323 138471 R hypothetical protein complement(137323..138471) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402069 YP_003165278.1 CDS CAP2UW1_4706 NC_013193.1 138474 139019 R hypothetical protein complement(138474..139019) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402070 YP_003165279.1 CDS CAP2UW1_4707 NC_013193.1 139016 140275 R hypothetical protein complement(139016..140275) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402071 YP_003165280.1 CDS CAP2UW1_4708 NC_013193.1 140495 141172 D hypothetical protein 140495..141172 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402072 YP_003165281.1 CDS CAP2UW1_4709 NC_013193.1 141169 142557 D hypothetical protein 141169..142557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402073 YP_003165282.1 CDS CAP2UW1_4710 NC_013193.1 142814 143113 R hypothetical protein complement(142814..143113) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402074 YP_003165283.1 CDS CAP2UW1_4711 NC_013193.1 143240 143563 R hypothetical protein complement(143240..143563) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402075 YP_003165284.1 CDS CAP2UW1_4713 NC_013193.1 144197 144508 D hypothetical protein 144197..144508 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402106 YP_003165285.1 CDS CAP2UW1_4715 NC_013193.1 145042 148008 R hypothetical protein complement(145042..148008) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402107 YP_003165286.1 CDS CAP2UW1_4716 NC_013193.1 148011 148571 R hypothetical protein complement(148011..148571) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402078 YP_003165287.1 CDS CAP2UW1_4717 NC_013193.1 148701 149780 R hypothetical protein complement(148701..149780) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402079 YP_003165288.1 CDS CAP2UW1_4718 NC_013193.1 149777 152182 R hypothetical protein complement(149777..152182) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402080 YP_003165289.1 CDS CAP2UW1_4719 NC_013193.1 152266 152706 D hypothetical protein 152266..152706 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402081 YP_003165290.1 CDS CAP2UW1_4720 NC_013193.1 152725 152988 R hypothetical protein complement(152725..152988) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402082 YP_003165291.1 CDS CAP2UW1_4721 NC_013193.1 153007 153591 R conjugal transfer protein TrbM complement(153007..153591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402083 YP_003165292.1 CDS CAP2UW1_4722 NC_013193.1 153606 155132 R hypothetical protein complement(153606..155132) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402084 YP_003165293.1 CDS CAP2UW1_4723 NC_013193.1 155141 155368 R hypothetical protein complement(155141..155368) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402085 YP_003165294.1 CDS CAP2UW1_4724 NC_013193.1 155384 156187 R conjugal transfer protein TrbJ complement(155384..156187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402086 YP_003165295.1 CDS CAP2UW1_4725 NC_013193.1 156206 157657 R conjugal transfer protein TrbI complement(156206..157657) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402087 YP_003165296.1 CDS CAP2UW1_4726 NC_013193.1 157664 158125 R conjugal transfer protein TrbH complement(157664..158125) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402088 YP_003165297.1 CDS CAP2UW1_4728 NC_013193.1 159032 159805 R conjugal transfer protein TrbF complement(159032..159805) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402108 YP_003165298.1 CDS CAP2UW1_4729 NC_013193.1 159802 162360 R type IV secretion system ATPase VirB4 family; conjugal transfer protein TrbE complement(159802..162360) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402090 YP_003165299.1 CDS CAP2UW1_4730 NC_013193.1 162357 162668 R conjugal transfer protein TrbD complement(162357..162668) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402091 YP_003165300.1 CDS CAP2UW1_4731 NC_013193.1 162671 163093 R conjugal transfer protein TrbC complement(162671..163093) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402092 YP_003165301.1 CDS CAP2UW1_4732 NC_013193.1 163107 164069 R conjugal transfer ATPase TrbB complement(163107..164069) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402093 YP_003165302.1 CDS CAP2UW1_4733 NC_013193.1 164393 164764 R TrbA repressor; conjugal transfer protein TrbA complement(164393..164764) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402094 YP_003165303.1 CDS CAP2UW1_4734 NC_013193.1 165190 166233 R hypothetical protein complement(165190..166233) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402095 YP_003165304.1 CDS CAP2UW1_4735 NC_013193.1 166246 167226 R hypothetical protein complement(166246..167226) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402096 YP_003165305.1 CDS dnaA NC_013194.1 239 1660 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 239..1660 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406656 YP_003165306.1 CDS CAP2UW1_0002 NC_013194.1 1869 2999 D KEGG: dar:Daro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1869..2999 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402125 YP_003165307.1 CDS gyrB NC_013194.1 3062 5530 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 3062..5530 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402126 YP_003165308.1 CDS pyrF NC_013194.1 5543 6364 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(5543..6364) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402127 YP_003165309.1 CDS CAP2UW1_0005 NC_013194.1 6533 7168 D KEGG: azo:azo3573 hypothetical protein; hypothetical protein 6533..7168 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402128 YP_003165310.1 CDS CAP2UW1_0007 NC_013194.1 7353 8054 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: dar:Daro_4042 ExsB; exsB protein complement(7353..8054) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402130 YP_003165311.1 CDS CAP2UW1_0008 NC_013194.1 8309 9679 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: nmu:Nmul_A0008 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 8309..9679 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402131 YP_003165312.1 CDS CAP2UW1_0009 NC_013194.1 9685 10251 D PFAM: response regulator receiver; helix-turn-helix Fis-type; KEGG: psa:PST_1004 probable two-component response regulator; two component Fis family transcriptional regulator 9685..10251 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402132 YP_003165313.1 CDS CAP2UW1_0010 NC_013194.1 10254 10658 D PFAM: RNA-binding S4 domain protein; KEGG: tbd:Tbd_0509 RNA-binding S4 protein; RNA-binding S4 domain-containing protein 10254..10658 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402133 YP_003165314.1 CDS CAP2UW1_0011 NC_013194.1 10666 11022 D KEGG: reh:H16_A3595 hypothetical protein; hypothetical protein 10666..11022 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402134 YP_003165315.1 CDS CAP2UW1_0012 NC_013194.1 11079 12407 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cvi:CV_0231 probable hemolysin; hypothetical protein complement(11079..12407) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402135 YP_003165316.1 CDS aroD NC_013194.1 12457 13248 R catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis; 3-dehydroquinate dehydratase complement(12457..13248) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402136 YP_003165317.1 CDS CAP2UW1_0014 NC_013194.1 13249 14010 R PFAM: Integral membrane protein TerC; KEGG: pol:Bpro_3668 integral membrane protein TerC; Integral membrane protein TerC complement(13249..14010) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402137 YP_003165318.1 CDS CAP2UW1_0015 NC_013194.1 14455 15138 D PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_3533 lytic transglycosylase, catalytic; lytic transglycosylase subunit 14455..15138 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402138 YP_003165319.1 CDS CAP2UW1_0016 NC_013194.1 15192 17663 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(15192..17663) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402139 YP_003165320.1 CDS CAP2UW1_0017 NC_013194.1 17696 19744 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(17696..19744) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402140 YP_003165321.1 CDS CAP2UW1_0018 NC_013194.1 19993 22290 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 19993..22290 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402141 YP_003165322.1 CDS CAP2UW1_0019 NC_013194.1 23173 24732 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rru:Rru_A0873 hypothetical protein; peptidoglycan-binding domain 1 protein 23173..24732 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402144 YP_003165323.1 CDS CAP2UW1_0020 NC_013194.1 24971 25246 D hypothetical protein 24971..25246 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402145 YP_003165324.1 CDS CAP2UW1_0021 NC_013194.1 25285 25611 D hypothetical protein 25285..25611 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402146 YP_003165325.1 CDS CAP2UW1_0022 NC_013194.1 25654 26559 D KEGG: acr:Acry_2861 hypothetical protein; hypothetical protein 25654..26559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402147 YP_003165326.1 CDS CAP2UW1_0023 NC_013194.1 26556 26867 D hypothetical protein 26556..26867 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402148 YP_003165327.1 CDS CAP2UW1_0024 NC_013194.1 26854 27159 D hypothetical protein 26854..27159 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402149 YP_003165328.1 CDS CAP2UW1_0025 NC_013194.1 27168 27776 D PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A0870 OmpA/MotB; OmpA/MotB domain-containing protein 27168..27776 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402150 YP_003165329.1 CDS CAP2UW1_0026 NC_013194.1 27825 28115 D KEGG: rru:Rru_A0876 hypothetical protein; hypothetical protein 27825..28115 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402151 YP_003165330.1 CDS CAP2UW1_0027 NC_013194.1 28440 28934 D KEGG: dar:Daro_3598 hypothetical protein; hypothetical protein 28440..28934 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402152 YP_003165331.1 CDS CAP2UW1_0028 NC_013194.1 28938 29534 D PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_3597 OmpA/MotB; OmpA/MotB domain-containing protein 28938..29534 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402153 YP_003165332.1 CDS CAP2UW1_0029 NC_013194.1 29557 32550 D PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 29557..32550 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402154 YP_003165333.1 CDS CAP2UW1_0030 NC_013194.1 32575 33258 D PFAM: 17 kDa surface antigen; KEGG: bur:Bcep18194_C6770 hypothetical protein; 17 kDa surface antigen 32575..33258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402155 YP_003165334.1 CDS CAP2UW1_0031 NC_013194.1 33698 35614 D PFAM: thiamine biosynthesis protein ThiC; KEGG: dar:Daro_3921 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 33698..35614 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402156 YP_003165335.1 CDS CAP2UW1_0032 NC_013194.1 35676 38537 D KEGG: rfr:Rfer_1850 hypothetical protein; hypothetical protein 35676..38537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402157 YP_003165336.1 CDS CAP2UW1_0033 NC_013194.1 38558 39709 D KEGG: rfr:Rfer_1851 hypothetical protein; hypothetical protein 38558..39709 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402158 YP_003165337.1 CDS CAP2UW1_0034 NC_013194.1 39686 40495 R PFAM: cell wall hydrolase/autolysin; KEGG: dar:Daro_0043 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin complement(39686..40495) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402159 YP_003165338.1 CDS CAP2UW1_0035 NC_013194.1 40497 40829 R PFAM: Domain of unknown function DUF1840; KEGG: cti:RALTA_A0101 hypothetical protein; hypothetical protein complement(40497..40829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402160 YP_003165339.1 CDS CAP2UW1_0036 NC_013194.1 41001 41717 D PFAM: pseudouridine synthase; KEGG: bmu:Bmul_0808 pseudouridine synthase; pseudouridine synthase 41001..41717 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402161 YP_003165340.1 CDS CAP2UW1_0037 NC_013194.1 41831 42742 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eba:ebA2966 transcriptional regulator, LysR family; LysR family transcriptional regulator 41831..42742 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402162 YP_003165341.1 CDS CAP2UW1_0038 NC_013194.1 42825 45422 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(42825..45422) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402163 YP_003165342.1 CDS CAP2UW1_0039 NC_013194.1 45566 46015 R PFAM: protein of unknown function DUF494; KEGG: eba:ebA2962 hypothetical protein; hypothetical protein complement(45566..46015) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402164 YP_003165343.1 CDS CAP2UW1_0040 NC_013194.1 46028 47119 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: dar:Daro_0019 smf protein; DNA protecting protein DprA complement(46028..47119) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402165 YP_003165344.1 CDS CAP2UW1_0041 NC_013194.1 47122 48141 R PFAM: Peptidoglycan-binding LysM; KEGG: dar:Daro_0020 peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(47122..48141) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402166 YP_003165345.1 CDS CAP2UW1_0042 NC_013194.1 48319 48822 D KEGG: dar:Daro_0021 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 48319..48822 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402167 YP_003165346.1 CDS fmt NC_013194.1 48819 49745 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 48819..49745 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402168 YP_003165347.1 CDS CAP2UW1_0044 NC_013194.1 49818 50666 D PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_0023 heat shock protein HtpX; M48 family peptidase 49818..50666 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402169 YP_003165348.1 CDS CAP2UW1_0045 NC_013194.1 50709 51671 R KEGG: dar:Daro_0027 hypothetical protein; hypothetical protein complement(50709..51671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402170 YP_003165349.1 CDS CAP2UW1_0046 NC_013194.1 51661 52569 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tbd:Tbd_1114 cation efflux protein; cation diffusion facilitator family transporter complement(51661..52569) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402171 YP_003165350.1 CDS CAP2UW1_0047 NC_013194.1 52693 54021 D TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: dar:Daro_0028 Fmu, rRNA SAM-dependent methyltransferase; sun protein 52693..54021 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402172 YP_003165351.1 CDS CAP2UW1_0048 NC_013194.1 53996 54616 D KEGG: dar:Daro_0029 probable proline rich signal peptide protein; hypothetical protein 53996..54616 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402173 YP_003165352.1 CDS CAP2UW1_0049 NC_013194.1 54613 56766 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: dar:Daro_0030 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 54613..56766 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402174 YP_003165353.1 CDS CAP2UW1_0050 NC_013194.1 56769 58025 D PFAM: response regulator receiver; KEGG: dar:Daro_0031 helix-turn-helix, fis-type; putative two component sigma-54 specific Fis family transcriptional regulator 56769..58025 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402175 YP_003165354.1 CDS trkA NC_013194.1 58063 59493 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 58063..59493 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402176 YP_003165355.1 CDS CAP2UW1_0052 NC_013194.1 59503 60957 D PFAM: cation transporter; KEGG: tbd:Tbd_0022 trk system potassium uptake membrane protein; cation transporter 59503..60957 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402177 YP_003165356.1 CDS CAP2UW1_0053 NC_013194.1 60997 62457 R PFAM: cation transporter; KEGG: eba:ebA2824 cation transport protein; cation transporter complement(60997..62457) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402178 YP_003165357.1 CDS CAP2UW1_0054 NC_013194.1 62931 64430 D PFAM: protein of unknown function DUF1538; KEGG: sun:SUN_1865 hypothetical protein; hypothetical protein 62931..64430 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402179 YP_003165358.1 CDS CAP2UW1_0055 NC_013194.1 64427 64774 D KEGG: aeh:Mlg_0660 hypothetical protein; hypothetical protein 64427..64774 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402180 YP_003165359.1 CDS CAP2UW1_0056 NC_013194.1 64849 65244 D PFAM: CBS domain containing protein; KEGG: aeh:Mlg_0661 putative signal-transduction protein with CBS domains; putative signal transduction protein with CBS domains 64849..65244 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402181 YP_003165360.1 CDS CAP2UW1_0057 NC_013194.1 65257 65694 D hypothetical protein 65257..65694 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402182 YP_003165361.1 CDS hemE NC_013194.1 65845 66924 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 65845..66924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402183 YP_003165362.1 CDS CAP2UW1_0059 NC_013194.1 67267 69291 D KEGG: dar:Daro_0033 replication restart DNA helicase PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 67267..69291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402184 YP_003165363.1 CDS CAP2UW1_0060 NC_013194.1 69634 71172 D PFAM: Ppx/GppA phosphatase; KEGG: abo:ABO_2461 hypothetical protein; Ppx/GppA phosphatase 69634..71172 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402185 YP_003165364.1 CDS CAP2UW1_0061 NC_013194.1 71275 72513 D KEGG: dar:Daro_2845 hypothetical protein; hypothetical protein 71275..72513 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402186 YP_003165365.1 CDS CAP2UW1_0062 NC_013194.1 72557 73756 R PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0035 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(72557..73756) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402187 YP_003165366.1 CDS CAP2UW1_0063 NC_013194.1 73781 74719 R PFAM: ROK family protein; KEGG: dar:Daro_0037 N-acetylglucosamine kinase; ROK family protein complement(73781..74719) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402188 YP_003165367.1 CDS CAP2UW1_0065 NC_013194.1 75257 76315 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: cvi:CV_4127 probable dehydrogenase; oxidoreductase domain-containing protein 75257..76315 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402190 YP_003165368.1 CDS CAP2UW1_0066 NC_013194.1 76318 76893 D PFAM: transferase hexapeptide repeat containing protein; KEGG: aav:Aave_0951 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 76318..76893 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402191 YP_003165369.1 CDS CAP2UW1_0067 NC_013194.1 76890 77960 D PFAM: FAD dependent oxidoreductase; KEGG: aba:Acid345_3314 FAD dependent oxidoreductase; FAD dependent oxidoreductase 76890..77960 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402192 YP_003165370.1 CDS CAP2UW1_0068 NC_013194.1 78315 79904 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: glo:Glov_1506 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 78315..79904 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402193 YP_003165371.1 CDS CAP2UW1_0069 NC_013194.1 80182 81180 D PFAM: glycosyl transferase family 2; KEGG: bav:BAV0086 glycosyl transferase; family 2 glycosyl transferase 80182..81180 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402194 YP_003165372.1 CDS CAP2UW1_0070 NC_013194.1 81177 82502 D PFAM: polysaccharide biosynthesis protein; KEGG: bav:BAV0084 lipopolysaccharide biosynthesis protein; polysaccharide biosynthesis protein 81177..82502 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402195 YP_003165373.1 CDS CAP2UW1_0071 NC_013194.1 82499 84817 D KEGG: ade:Adeh_1209 hypothetical protein; Spermidine synthase-like protein 82499..84817 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402196 YP_003165374.1 CDS CAP2UW1_0072 NC_013194.1 84825 86879 D PFAM: glutamine amidotransferase class-II; KEGG: bav:BAV0087 lipopolysaccharide biosynthesis protein; glutamine amidotransferase class-II 84825..86879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402197 YP_003165375.1 CDS CAP2UW1_0073 NC_013194.1 86876 88057 D hypothetical protein 86876..88057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402198 YP_003165376.1 CDS CAP2UW1_0074 NC_013194.1 88054 91224 D KEGG: pth:PTH_1110 hypothetical protein; hypothetical protein 88054..91224 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402199 YP_003165377.1 CDS CAP2UW1_0078 NC_013194.1 93366 93563 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(93366..93563) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402203 YP_003165378.1 CDS CAP2UW1_0079 NC_013194.1 93560 94354 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(93560..94354) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402204 YP_003165379.1 CDS CAP2UW1_0082 NC_013194.1 95416 95883 D KEGG: nha:Nham_2789 hypothetical protein; hypothetical protein 95416..95883 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402207 YP_003165380.1 CDS CAP2UW1_0083 NC_013194.1 95880 96164 D hypothetical protein 95880..96164 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402208 YP_003165381.1 CDS CAP2UW1_0084 NC_013194.1 96161 98239 D PFAM: regulatory protein MerR; Resolvase domain; Recombinase; KEGG: bpt:Bpet1409 transposase; Resolvase domain-containing protein 96161..98239 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402209 YP_003165382.1 CDS CAP2UW1_0085 NC_013194.1 99167 99691 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(99167..99691) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402210 YP_003165383.1 CDS CAP2UW1_0086 NC_013194.1 99957 101045 D PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase; integrase catalytic subunit 99957..101045 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402211 YP_003165384.1 CDS CAP2UW1_0087 NC_013194.1 101042 101827 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein 101042..101827 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402212 YP_003165385.1 CDS CAP2UW1_0088 NC_013194.1 102147 102467 D KEGG: eba:ebD46 hypothetical protein, possibly transposase fragment; hypothetical protein 102147..102467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402213 YP_003165386.1 CDS CAP2UW1_0089 NC_013194.1 102464 102817 D PFAM: IS66 Orf2 family protein; KEGG: eba:ebB55 transposase, fragment; IS66 Orf2 family protein 102464..102817 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402214 YP_003165387.1 CDS CAP2UW1_0090 NC_013194.1 103348 104151 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein complement(103348..104151) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402215 YP_003165388.1 CDS CAP2UW1_0091 NC_013194.1 104207 105733 R PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit complement(104207..105733) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402216 YP_003165389.1 CDS CAP2UW1_0092 NC_013194.1 105978 107375 D PFAM: transposase IS66; KEGG: eba:ebA5523 transposase; transposase IS66 105978..107375 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402217 YP_003165390.1 CDS CAP2UW1_0095 NC_013194.1 108884 111463 D KEGG: bav:BAV0082 lipopolysaccharide biosynthesis protein; hypothetical protein 108884..111463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402220 YP_003165391.1 CDS CAP2UW1_0097 NC_013194.1 112554 113657 D PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family; transposase IS4 family protein 112554..113657 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402222 YP_003165392.1 CDS CAP2UW1_0098 NC_013194.1 113917 114774 R KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein complement(113917..114774) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402223 YP_003165393.1 CDS CAP2UW1_0101 NC_013194.1 118321 119646 D PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase; transposase IS4 family protein 118321..119646 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402226 YP_003165394.1 CDS CAP2UW1_0103 NC_013194.1 121819 123165 D PFAM: polysaccharide biosynthesis protein; KEGG: ajs:Ajs_3022 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 121819..123165 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402228 YP_003165395.1 CDS CAP2UW1_0104 NC_013194.1 123548 124651 R PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family; transposase IS4 family protein complement(123548..124651) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402229 YP_003165396.1 CDS CAP2UW1_0105 NC_013194.1 124915 125892 D KEGG: eba:ebA3230 transposase; transposase 124915..125892 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402230 YP_003165397.1 CDS CAP2UW1_0106 NC_013194.1 126411 127658 D PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1; group 1 glycosyl transferase 126411..127658 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402231 YP_003165398.1 CDS CAP2UW1_0107 NC_013194.1 127860 129017 D KEGG: pap:PSPA7_1978 LPS biosynthesis protein WbpG; LPS biosynthesis protein WbpG 127860..129017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402232 YP_003165399.1 CDS hisH NC_013194.1 129014 129628 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 129014..129628 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402233 YP_003165400.1 CDS CAP2UW1_0109 NC_013194.1 129630 130427 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamide and glutamine to imidazole-glycerolphosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 129630..130427 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402234 YP_003165401.1 CDS CAP2UW1_0110 NC_013194.1 130438 131466 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: pen:PSEEN1500 polysaccharide biosynthesis protein; O-antigen biosynthesis protein; polysaccharide biosynthesis protein CapD 130438..131466 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402235 YP_003165402.1 CDS CAP2UW1_0113 NC_013194.1 131982 133094 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: ppg:PputGB1_1374 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 131982..133094 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402238 YP_003165403.1 CDS CAP2UW1_0114 NC_013194.1 133096 134229 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: pen:PSEEN1502 UDP-N-acetylglucosamine 2-epimerase Wbjd; UDP-N-acetylglucosamine 2-epimerase 133096..134229 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402239 YP_003165404.1 CDS CAP2UW1_0115 NC_013194.1 134242 135489 D PFAM: glycosyl transferase group 1; KEGG: pap:PSPA7_1983 glycosyltransferase; group 1 glycosyl transferase 134242..135489 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402240 YP_003165405.1 CDS CAP2UW1_0116 NC_013194.1 135486 136451 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: pol:Bpro_3986 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 135486..136451 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402241 YP_003165406.1 CDS CAP2UW1_0117 NC_013194.1 136473 137039 D PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase; sugar transferase 136473..137039 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402242 YP_003165407.1 CDS CAP2UW1_0118 NC_013194.1 137151 139082 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mms:mma_2254 nucleoside-diphosphate sugar epimerases; polysaccharide biosynthesis protein CapD 137151..139082 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402243 YP_003165408.1 CDS CAP2UW1_0119 NC_013194.1 139104 139529 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: xac:XAC1695 hypothetical protein; lipopolysaccharide biosynthesis protein 139104..139529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402244 YP_003165409.1 CDS CAP2UW1_0120 NC_013194.1 139629 140015 D hypothetical protein 139629..140015 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402245 YP_003165410.1 CDS CAP2UW1_0121 NC_013194.1 140097 141995 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: tbd:Tbd_2023 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase 140097..141995 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402246 YP_003165411.1 CDS CAP2UW1_0122 NC_013194.1 142173 143582 D KEGG: dar:Daro_3211 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit 142173..143582 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402247 YP_003165412.1 CDS CAP2UW1_0123 NC_013194.1 143673 144260 D PFAM: manganese and iron superoxide dismutase; KEGG: dar:Daro_3212 manganese and iron superoxide dismutase; Superoxide dismutase 143673..144260 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402248 YP_003165413.1 CDS CAP2UW1_0124 NC_013194.1 144337 144816 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: azo:azo3385 single-strand DNA-binding protein; single-strand-binding protein complement(144337..144816) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402249 YP_003165414.1 CDS CAP2UW1_0125 NC_013194.1 144867 146072 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: eba:ebA3858 putative MFS family transporter; major facilitator superfamily protein complement(144867..146072) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402250 YP_003165415.1 CDS CAP2UW1_0126 NC_013194.1 146143 149016 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dar:Daro_0473 excinuclease ABC subunit A; excinuclease ABC subunit A 146143..149016 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402251 YP_003165416.1 CDS CAP2UW1_0127 NC_013194.1 149262 149546 D PFAM: histone family protein DNA-binding protein; KEGG: tbd:Tbd_0007 histone-like DNA-binding protein; histone family protein DNA-binding protein 149262..149546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402252 YP_003165417.1 CDS CAP2UW1_0128 NC_013194.1 149657 150166 D KEGG: pnu:Pnuc_1628 hypothetical protein; hypothetical protein 149657..150166 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402253 YP_003165418.1 CDS CAP2UW1_0129 NC_013194.1 150140 151198 R PFAM: transposase IS4 family protein; KEGG: dge:Dgeo_3112 transposase IS4 family protein; transposase IS4 family protein complement(150140..151198) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402254 YP_003165419.1 CDS CAP2UW1_0130 NC_013194.1 151908 153350 D KEGG: dar:Daro_1156 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 151908..153350 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402256 YP_003165420.1 CDS CAP2UW1_0131 NC_013194.1 153426 153884 D KEGG: pnu:Pnuc_0542 hypothetical protein; hypothetical protein 153426..153884 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402257 YP_003165421.1 CDS CAP2UW1_0132 NC_013194.1 154602 157529 D PFAM: transcriptional regulator domain protein; KEGG: mpt:Mpe_A1734 ATPase-like protein; transcriptional regulator ATPase, winged helix family 154602..157529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402258 YP_003165422.1 CDS CAP2UW1_0133 NC_013194.1 157636 157851 D hypothetical protein 157636..157851 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402259 YP_003165423.1 CDS CAP2UW1_0134 NC_013194.1 157905 158240 D KEGG: rso:RS02287 hypothetical protein; hypothetical protein 157905..158240 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402260 YP_003165424.1 CDS CAP2UW1_0135 NC_013194.1 158253 158699 D KEGG: rpt:Rpal_2539 hypothetical protein; hypothetical protein 158253..158699 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402261 YP_003165425.1 CDS CAP2UW1_0136 NC_013194.1 158788 160290 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bph:Bphy_3507 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system, outer membrane lipoprotein 158788..160290 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402262 YP_003165426.1 CDS CAP2UW1_0137 NC_013194.1 160287 161405 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bph:Bphy_3506 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 160287..161405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402263 YP_003165427.1 CDS CAP2UW1_0138 NC_013194.1 161402 164491 D PFAM: acriflavin resistance protein; KEGG: bph:Bphy_3505 acriflavin resistance protein; acriflavin resistance protein 161402..164491 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402264 YP_003165428.1 CDS CAP2UW1_0139 NC_013194.1 164582 165238 D PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: azc:AZC_0320 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 164582..165238 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402265 YP_003165429.1 CDS CAP2UW1_0140 NC_013194.1 165397 167013 D PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase; transposase IS4 family protein 165397..167013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402266 YP_003165430.1 CDS CAP2UW1_0141 NC_013194.1 167397 168857 D PFAM: Patatin; KEGG: sfu:Sfum_1455 patatin; Patatin 167397..168857 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402267 YP_003165431.1 CDS CAP2UW1_0142 NC_013194.1 168909 170036 R PFAM: protein of unknown function UPF0118; KEGG: min:Minf_0718 predicted permease, member of the PurR regulon; hypothetical protein complement(168909..170036) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402268 YP_003165432.1 CDS CAP2UW1_0143 NC_013194.1 170446 172335 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 170446..172335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402269 YP_003165433.1 CDS CAP2UW1_0144 NC_013194.1 172546 173379 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bid:Bind_0201 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 172546..173379 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402270 YP_003165434.1 CDS CAP2UW1_0145 NC_013194.1 173754 174557 D PFAM: EAL domain protein; KEGG: bbr:BB3116 hypothetical protein; diguanylate phosphodiesterase 173754..174557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402271 YP_003165435.1 CDS CAP2UW1_0146 NC_013194.1 174541 175980 R TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2258 heavy metal sensor kinase; heavy metal sensor signal transduction histidine kinase complement(174541..175980) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402272 YP_003165436.1 CDS CAP2UW1_0147 NC_013194.1 175971 176654 R TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0422 two component heavy metal response transcriptional regulator, winged helix family; winged helix family two component heavy metal response transcriptional regulator complement(175971..176654) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402273 YP_003165437.1 CDS CAP2UW1_0148 NC_013194.1 176805 178154 D PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein; outer membrane efflux protein 176805..178154 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402274 YP_003165438.1 CDS CAP2UW1_0149 NC_013194.1 178151 179500 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rfr:Rfer_0412 secretion protein HlyD; RND family efflux transporter MFP subunit 178151..179500 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402275 YP_003165439.1 CDS CAP2UW1_0150 NC_013194.1 179536 182667 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 179536..182667 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402276 YP_003165440.1 CDS CAP2UW1_0151 NC_013194.1 182674 183585 R KEGG: rde:RD1_1403 hypothetical protein; hypothetical protein complement(182674..183585) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402277 YP_003165441.1 CDS CAP2UW1_0152 NC_013194.1 183582 183857 R hypothetical protein complement(183582..183857) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402278 YP_003165442.1 CDS CAP2UW1_0154 NC_013194.1 184313 185551 R PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; KEGG: bfs:BF1216 putative L-serine dehydratase; serine dehydratase alpha chain complement(184313..185551) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402280 YP_003165443.1 CDS CAP2UW1_0155 NC_013194.1 185682 185810 D hypothetical protein 185682..185810 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402281 YP_003165444.1 CDS CAP2UW1_0156 NC_013194.1 185829 186446 R PFAM: Glutathione S-transferase domain; KEGG: oan:Oant_1991 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein complement(185829..186446) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402282 YP_003165445.1 CDS CAP2UW1_0157 NC_013194.1 186629 190363 R KEGG: amr:AM1_5108 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(186629..190363) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402283 YP_003165446.1 CDS CAP2UW1_0158 NC_013194.1 190793 193801 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GntR domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dvl:Dvul_1149 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase complement(190793..193801) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402284 YP_003165447.1 CDS CAP2UW1_0159 NC_013194.1 194205 195233 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: vpa:VPA0790 putative YhfP protein; membrane-bound metal-dependent hydrolase 194205..195233 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402285 YP_003165448.1 CDS CAP2UW1_0160 NC_013194.1 195461 196687 D PFAM: outer membrane efflux protein; KEGG: mms:mma_3050 outer membrane cation efflux system protein; outer membrane efflux protein 195461..196687 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402286 YP_003165449.1 CDS CAP2UW1_0161 NC_013194.1 196684 197256 D KEGG: mrd:Mrad2831_2533 efflux transporter, RND family, MFP subunit; hypothetical protein 196684..197256 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402287 YP_003165450.1 CDS CAP2UW1_0162 NC_013194.1 197249 198451 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_1747 hypothetical protein; RND family efflux transporter MFP subunit 197249..198451 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402288 YP_003165451.1 CDS CAP2UW1_0163 NC_013194.1 198461 201565 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_1746 heavy metal efflux pump CzcA; CzcA family heavy metal efflux pump 198461..201565 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402289 YP_003165452.1 CDS CAP2UW1_0164 NC_013194.1 201589 202050 D KEGG: tbd:Tbd_1745 hypothetical protein; hypothetical protein 201589..202050 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402290 YP_003165453.1 CDS CAP2UW1_0165 NC_013194.1 202107 203561 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: gur:Gura_2663 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system, outer membrane lipoprotein complement(202107..203561) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402291 YP_003165454.1 CDS CAP2UW1_0166 NC_013194.1 203558 206728 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_1076 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(203558..206728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402292 YP_003165455.1 CDS CAP2UW1_0167 NC_013194.1 206738 207868 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_2665 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(206738..207868) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402293 YP_003165456.1 CDS CAP2UW1_0168 NC_013194.1 208045 209055 D PFAM: portal protein; KEGG: bph:Bphy_7142 phage portal protein, HK97 family; portal protein 208045..209055 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402294 YP_003165457.1 CDS CAP2UW1_0169 NC_013194.1 209126 209518 D PFAM: peptidase S49; KEGG: bph:Bphy_7143 peptidase S49; peptidase S49 209126..209518 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402295 YP_003165458.1 CDS CAP2UW1_0170 NC_013194.1 209849 210514 D KEGG: dar:Daro_3104 hypothetical protein; hypothetical protein 209849..210514 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402296 YP_003165459.1 CDS CAP2UW1_0171 NC_013194.1 210781 211884 D PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family; transposase IS4 family protein 210781..211884 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402297 YP_003165460.1 CDS CAP2UW1_0172 NC_013194.1 212178 212702 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 212178..212702 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402298 YP_003165461.1 CDS CAP2UW1_0173 NC_013194.1 212832 214154 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 212832..214154 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402299 YP_003165462.1 CDS CAP2UW1_0174 NC_013194.1 214157 214951 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 214157..214951 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402300 YP_003165463.1 CDS CAP2UW1_0175 NC_013194.1 214948 215145 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 214948..215145 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402301 YP_003165464.1 CDS CAP2UW1_0176 NC_013194.1 215344 216669 R PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase; transposase IS4 family protein complement(215344..216669) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402302 YP_003165465.1 CDS CAP2UW1_0177 NC_013194.1 217277 218146 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cph:Cpha266_1254 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 217277..218146 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402303 YP_003165466.1 CDS CAP2UW1_0178 NC_013194.1 218302 218823 R KEGG: pla:Plav_3056 hypothetical protein; hypothetical protein complement(218302..218823) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402304 YP_003165467.1 CDS CAP2UW1_0179 NC_013194.1 219078 220532 R PFAM: GTP-binding protein HSR1-related; KEGG: mpt:Mpe_A1439 hypothetical protein; HSR1-like GTP-binding protein complement(219078..220532) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402305 YP_003165468.1 CDS CAP2UW1_0180 NC_013194.1 220529 221980 R KEGG: mpt:Mpe_A1440 hypothetical protein; hypothetical protein complement(220529..221980) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402306 YP_003165469.1 CDS CAP2UW1_0181 NC_013194.1 222014 223474 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: bra:BRADO3979 conserved hypothetical protein; putative peptidase (caspase-like); peptidase C14 caspase catalytic subunit p20 complement(222014..223474) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402307 YP_003165470.1 CDS CAP2UW1_0182 NC_013194.1 223604 224368 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aeh:Mlg_1464 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase complement(223604..224368) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402308 YP_003165471.1 CDS CAP2UW1_0183 NC_013194.1 224462 225172 R PFAM: phospholipase/Carboxylesterase; KEGG: azo:azo2859 probable carboxylesterase; carboxylesterase complement(224462..225172) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402309 YP_003165472.1 CDS CAP2UW1_0184 NC_013194.1 225296 226390 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bra:BRADO2458 putative 3-isopropylmalate dehydrogenase (LeuB); 3-isopropylmalate dehydrogenase complement(225296..226390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402310 YP_003165473.1 CDS CAP2UW1_0185 NC_013194.1 226683 227903 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fps:FP1733 Cys/Met metabolism PLP-dependent enzyme; Cystathionine gamma-synthase 226683..227903 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402311 YP_003165474.1 CDS CAP2UW1_0186 NC_013194.1 228711 230405 D PFAM: transposase IS66; KEGG: fra:Francci3_1922 transposase IS66; transposase IS66 228711..230405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402312 YP_003165475.1 CDS CAP2UW1_0187 NC_013194.1 230402 231259 D KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein 230402..231259 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402313 YP_003165476.1 CDS CAP2UW1_0188 NC_013194.1 231902 233494 D KEGG: pna:Pnap_4966 hypothetical protein; hypothetical protein 231902..233494 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402314 YP_003165477.1 CDS CAP2UW1_0189 NC_013194.1 233491 235977 D KEGG: pna:Pnap_4965 hypothetical protein; hypothetical protein 233491..235977 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402315 YP_003165478.1 CDS CAP2UW1_0190 NC_013194.1 236152 236607 R KEGG: mms:mma_2737 hypothetical protein; hypothetical protein complement(236152..236607) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402316 YP_003165479.1 CDS CAP2UW1_0191 NC_013194.1 236604 237962 R PFAM: Resolvase domain; Recombinase; KEGG: mms:mma_2738 site-specific integrase/recombinase protein; Resolvase domain-containing protein complement(236604..237962) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402317 YP_003165480.1 CDS CAP2UW1_0192 NC_013194.1 237959 238255 R KEGG: neu:NE2540 putative bacteriophage related protein; putative bacteriophage-like protein complement(237959..238255) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402318 YP_003165481.1 CDS CAP2UW1_0193 NC_013194.1 239058 239525 R KEGG: reu:Reut_B4632 hypothetical protein; hypothetical protein complement(239058..239525) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402319 YP_003165482.1 CDS CAP2UW1_0194 NC_013194.1 239538 240263 R KEGG: reu:Reut_B4633 putative periplasmic protein; putative periplasmic protein complement(239538..240263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402320 YP_003165483.1 CDS CAP2UW1_0195 NC_013194.1 240384 242063 D PFAM: transposase IS4 family protein; KEGG: eba:p2A221 transposase; transposase IS4 family protein 240384..242063 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402321 YP_003165484.1 CDS CAP2UW1_0197 NC_013194.1 242768 244363 D PFAM: sulfatase; KEGG: rba:RB3877 aryl-sulfate sulphohydrolase; sulfatase 242768..244363 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402323 YP_003165485.1 CDS CAP2UW1_0198 NC_013194.1 244431 245432 D KEGG: rba:RB6740 nonspecific acid phosphatase precursor; nonspecific acid phosphatase 244431..245432 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402324 YP_003165486.1 CDS CAP2UW1_0199 NC_013194.1 245524 245865 D KEGG: mms:mma_2427 hypothetical protein; hypothetical protein 245524..245865 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402325 YP_003165487.1 CDS CAP2UW1_0200 NC_013194.1 246002 246781 D KEGG: reu:Reut_B4633 putative periplasmic protein; putative periplasmic protein 246002..246781 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402326 YP_003165488.1 CDS CAP2UW1_0201 NC_013194.1 246794 247264 D KEGG: reu:Reut_B4632 hypothetical protein; hypothetical protein 246794..247264 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402327 YP_003165489.1 CDS CAP2UW1_0202 NC_013194.1 247661 248635 R PFAM: Integrase catalytic region; KEGG: pna:Pnap_0429 integrase, catalytic region; integrase catalytic subunit complement(247661..248635) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402328 YP_003165490.1 CDS CAP2UW1_0203 NC_013194.1 248674 248973 R PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_0430 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(248674..248973) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402329 YP_003165491.1 CDS CAP2UW1_0204 NC_013194.1 248992 249657 D PFAM: integrase family protein; KEGG: eba:ebA2691 phage-related integrase; integrase family protein 248992..249657 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402330 YP_003165492.1 CDS CAP2UW1_0205 NC_013194.1 249688 249966 D PFAM: plasmid maintenance system killer; KEGG: bch:Bcen2424_3084 plasmid maintenance system killer; plasmid maintenance system killer 249688..249966 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402331 YP_003165493.1 CDS CAP2UW1_0206 NC_013194.1 249977 250291 D TIGRFAM: addiction module antidote protein, HigA family; KEGG: bcm:Bcenmc03_3101 putative plasmid maintenance system antidote protein, XRE family; XRE family transcriptional regulator 249977..250291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402332 YP_003165494.1 CDS CAP2UW1_0207 NC_013194.1 250296 251546 R KEGG: sus:Acid_6259 hypothetical protein; hypothetical protein complement(250296..251546) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402333 YP_003165495.1 CDS CAP2UW1_0208 NC_013194.1 252708 254501 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0787 GGDEF; diguanylate cyclase 252708..254501 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402335 YP_003165496.1 CDS CAP2UW1_0209 NC_013194.1 254539 255339 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_0656 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD-binding protein complement(254539..255339) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402336 YP_003165497.1 CDS CAP2UW1_0210 NC_013194.1 255336 256445 R PFAM: metal-dependent phosphohydrolase HD sub domain; Hpt domain protein; KEGG: dar:Daro_0657 metal-dependent phosphohydrolase, HD subdomain:Hpt; metal dependent phosphohydrolase complement(255336..256445) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402337 YP_003165498.1 CDS CAP2UW1_0211 NC_013194.1 256659 257003 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dar:Daro_3469 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 256659..257003 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402338 YP_003165499.1 CDS CAP2UW1_0212 NC_013194.1 257007 257924 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: eba:ebA4056 propable 16S pseudouridylate synthase; pseudouridine synthase 257007..257924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402339 YP_003165500.1 CDS CAP2UW1_0213 NC_013194.1 257965 259005 R KEGG: dar:Daro_0044 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(257965..259005) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402340 YP_003165501.1 CDS metH NC_013194.1 259025 262741 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(259025..262741) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402341 YP_003165502.1 CDS CAP2UW1_0215 NC_013194.1 263061 264239 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: swd:Swoo_2828 diguanylate cyclase; diguanylate cyclase 263061..264239 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402342 YP_003165503.1 CDS CAP2UW1_0216 NC_013194.1 264330 264932 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: rfr:Rfer_0614 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 264330..264932 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402343 YP_003165504.1 CDS CAP2UW1_0217 NC_013194.1 265070 267037 R PFAM: coenzyme A transferase; KEGG: mex:Mext_2071 coenzyme A transferase; coenzyme A transferase complement(265070..267037) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402344 YP_003165505.1 CDS CAP2UW1_0218 NC_013194.1 267806 269260 R PFAM: Sporulation domain protein; Sporulation domain-containing protein complement(267806..269260) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402345 YP_003165506.1 CDS CAP2UW1_0219 NC_013194.1 269494 269808 R hypothetical protein complement(269494..269808) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402346 YP_003165507.1 CDS CAP2UW1_0220 NC_013194.1 269910 270920 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_1832 sulfate transport system sulfate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 269910..270920 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402347 YP_003165508.1 CDS CAP2UW1_0221 NC_013194.1 271105 271941 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo1335 sulfate transport system permease protein probably; sulfate ABC transporter inner membrane subunit CysT 271105..271941 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402348 YP_003165509.1 CDS CAP2UW1_0222 NC_013194.1 271943 272836 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_0813 sulfate ABC transporter, permease protein; sulfate ABC transporter inner membrane subunit CysW 271943..272836 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402349 YP_003165510.1 CDS CAP2UW1_0223 NC_013194.1 272840 273907 D KEGG: azo:azo1333 putative sulfate transport ATP-binding protein; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit 272840..273907 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402350 YP_003165511.1 CDS CAP2UW1_0224 NC_013194.1 273917 274852 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2129 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 273917..274852 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402351 YP_003165512.1 CDS CAP2UW1_0225 NC_013194.1 275159 275461 D KEGG: cpc:Cpar_0602 hypothetical protein; hypothetical protein 275159..275461 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402352 YP_003165513.1 CDS CAP2UW1_0226 NC_013194.1 275463 275873 D SMART: helix-turn-helix domain protein; KEGG: ypi:YpsIP31758_0889 putative transcriptional regulator; XRE family transcriptional regulator 275463..275873 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402353 YP_003165514.1 CDS CAP2UW1_0227 NC_013194.1 276025 276252 R KEGG: dar:Daro_3342 hypothetical protein; hypothetical protein complement(276025..276252) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402354 YP_003165515.1 CDS CAP2UW1_0228 NC_013194.1 276249 279455 R PFAM: acriflavin resistance protein; KEGG: dar:Daro_3343 acriflavin resistance protein; acriflavin resistance protein complement(276249..279455) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402355 YP_003165516.1 CDS CAP2UW1_0229 NC_013194.1 279460 280482 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3344 secretion protein HlyD; RND family efflux transporter MFP subunit complement(279460..280482) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402356 YP_003165517.1 CDS CAP2UW1_0230 NC_013194.1 280665 282461 D PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_3094 Gamma-glutamyltransferase 1. Threonine peptidase. MEROPS family T03; Gamma-glutamyltransferase 280665..282461 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402357 YP_003165518.1 CDS CAP2UW1_0231 NC_013194.1 282461 283831 D PFAM: protein of unknown function DUF1615; KEGG: cvi:CV_1672 hypothetical protein; hypothetical protein 282461..283831 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402358 YP_003165519.1 CDS CAP2UW1_0233 NC_013194.1 285369 286694 D PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase; transposase IS4 family protein 285369..286694 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402361 YP_003165520.1 CDS CAP2UW1_0234 NC_013194.1 286763 287350 D hypothetical protein 286763..287350 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402362 YP_003165521.1 CDS CAP2UW1_0235 NC_013194.1 287433 288041 D KEGG: xom:XOO_2998 hypothetical protein; hypothetical protein 287433..288041 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402363 YP_003165522.1 CDS CAP2UW1_0236 NC_013194.1 288038 288961 D PFAM: Domain of unknown function DUF1814; KEGG: xom:XOO_2997 hypothetical protein; hypothetical protein 288038..288961 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402364 YP_003165523.1 CDS CAP2UW1_0237 NC_013194.1 289225 291462 R KEGG: rca:Rcas_1875 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase complement(289225..291462) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402365 YP_003165524.1 CDS CAP2UW1_0238 NC_013194.1 291643 293850 R KEGG: dar:Daro_1633 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(291643..293850) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402366 YP_003165525.1 CDS CAP2UW1_0239 NC_013194.1 294228 294374 R hypothetical protein complement(294228..294374) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402367 YP_003165526.1 CDS CAP2UW1_0240 NC_013194.1 294376 296277 R KEGG: dar:Daro_3751 hypothetical protein; hypothetical protein complement(294376..296277) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402368 YP_003165527.1 CDS CAP2UW1_0241 NC_013194.1 296346 297389 R PFAM: band 7 protein; KEGG: dar:Daro_3752 putative transmembrane protein; hypothetical protein complement(296346..297389) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402369 YP_003165528.1 CDS CAP2UW1_0242 NC_013194.1 297460 297864 R PFAM: protein of unknown function DUF350; KEGG: dar:Daro_3753 protein of unknown function DUF350; hypothetical protein complement(297460..297864) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402370 YP_003165529.1 CDS CAP2UW1_0243 NC_013194.1 297899 298618 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(297899..298618) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402371 YP_003165530.1 CDS CAP2UW1_0244 NC_013194.1 298615 299421 R KEGG: dar:Daro_3757 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin/acetyl-CoA-carboxylase ligase complement(298615..299421) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402372 YP_003165531.1 CDS CAP2UW1_0245 NC_013194.1 299460 300890 R KEGG: dar:Daro_3758 helix-turn-helix, fis-type:nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis Family complement(299460..300890) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402373 YP_003165532.1 CDS CAP2UW1_0246 NC_013194.1 300951 302057 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3759 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; signal transduction histidine kinase, nitrogen specific, NtrB complement(300951..302057) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402374 YP_003165533.1 CDS CAP2UW1_0247 NC_013194.1 302057 302548 R KEGG: dar:Daro_3762 hypothetical protein; hypothetical protein complement(302057..302548) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402375 YP_003165534.1 CDS CAP2UW1_0248 NC_013194.1 302733 304148 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: dar:Daro_3763 L-glutamine synthetase; glutamine synthetase complement(302733..304148) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402376 YP_003165535.1 CDS CAP2UW1_0249 NC_013194.1 304453 304902 D SMART: Rhodanese domain protein; KEGG: eba:ebA4122 rhodanese-like protein; Rhodanese domain-containing protein 304453..304902 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402377 YP_003165536.1 CDS CAP2UW1_0250 NC_013194.1 304957 306054 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 304957..306054 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402378 YP_003165537.1 CDS CAP2UW1_0251 NC_013194.1 306112 307050 D PFAM: glycosyl transferase family 2; KEGG: nmu:Nmul_A0297 glycosyl transferase, family 2; family 2 glycosyl transferase 306112..307050 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402379 YP_003165538.1 CDS CAP2UW1_0252 NC_013194.1 307067 307936 D PFAM: Hsp33 protein; KEGG: tbd:Tbd_0750 disulfide bond chaperone, HSP33 family; Hsp33 protein 307067..307936 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402380 YP_003165539.1 CDS CAP2UW1_0253 NC_013194.1 308014 309423 R PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_2750 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; FAD linked oxidase domain-containing protein complement(308014..309423) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402381 YP_003165540.1 CDS CAP2UW1_0254 NC_013194.1 309927 310892 D KEGG: eba:ebA584 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 309927..310892 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402382 YP_003165541.1 CDS CAP2UW1_0255 NC_013194.1 310915 313368 D KEGG: pna:Pnap_1105 glycogen/starch/alpha-glucan phosphorylases; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 310915..313368 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402383 YP_003165542.1 CDS CAP2UW1_0256 NC_013194.1 313380 315563 D KEGG: pna:Pnap_1104 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein 313380..315563 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402384 YP_003165543.1 CDS CAP2UW1_0257 NC_013194.1 315551 317566 D KEGG: pna:Pnap_1103 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching enzyme GlgX 315551..317566 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402385 YP_003165544.1 CDS CAP2UW1_0258 NC_013194.1 317608 318576 R PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: dar:Daro_3706 hypothetical protein; hypothetical protein complement(317608..318576) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402386 YP_003165545.1 CDS CAP2UW1_0259 NC_013194.1 318614 319579 R PFAM: protein of unknown function DUF815; SMART: AAA ATPase; KEGG: eba:ebA4101 predicted AAA ATPase superfamily; hypothetical protein complement(318614..319579) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402387 YP_003165546.1 CDS CAP2UW1_0260 NC_013194.1 319629 320879 D PFAM: MltA domain protein; 3D domain protein; KEGG: eba:ebA4100 membrane-bound lytic murein transglycosylase A; MltA domain-containing protein 319629..320879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402388 YP_003165547.1 CDS CAP2UW1_0261 NC_013194.1 321055 322257 D PFAM: Rh family protein/ammonium transporter; KEGG: dar:Daro_3703 Rh-like protein/ammonium transporter; Rh family protein/ammonium transporter 321055..322257 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402389 YP_003165548.1 CDS CAP2UW1_0262 NC_013194.1 322363 323874 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 322363..323874 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402390 YP_003165549.1 CDS CAP2UW1_0263 NC_013194.1 323963 324595 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: dar:Daro_4131 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(323963..324595) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402391 YP_003165550.1 CDS CAP2UW1_0264 NC_013194.1 324639 326582 D PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_4132 lytic transglycosylase, catalytic; lytic transglycosylase subunit 324639..326582 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402392 YP_003165551.1 CDS CAP2UW1_0265 NC_013194.1 326623 327588 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: dar:Daro_4134 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase:NmrA-like; NADH dehydrogenase (ubiquinone) 326623..327588 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402393 YP_003165552.1 CDS CAP2UW1_0266 NC_013194.1 327627 328874 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dar:Daro_4135 metal dependent phosphohydrolase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 327627..328874 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402394 YP_003165553.1 CDS CAP2UW1_0267 NC_013194.1 328871 330055 R PFAM: protein of unknown function DUF185; KEGG: dar:Daro_4140 protein of unknown function DUF185; hypothetical protein complement(328871..330055) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402395 YP_003165554.1 CDS CAP2UW1_0268 NC_013194.1 330116 330964 R hypothetical protein complement(330116..330964) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402396 YP_003165555.1 CDS CAP2UW1_0269 NC_013194.1 331099 331836 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo0486 pteridine reductase; short-chain dehydrogenase/reductase SDR 331099..331836 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402397 YP_003165556.1 CDS CAP2UW1_0270 NC_013194.1 331863 332747 D PFAM: PP-loop domain protein; KEGG: dar:Daro_4143 PP-loop; PP-loop domain-containing protein 331863..332747 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402398 YP_003165557.1 CDS CAP2UW1_0271 NC_013194.1 332818 333708 D PFAM: Forkhead-associated protein; KEGG: dar:Daro_4144 forkhead-associated; FHA domain-containing protein 332818..333708 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402399 YP_003165558.1 CDS CAP2UW1_0272 NC_013194.1 333806 334513 R KEGG: dar:Daro_0617 phosphoribosyltransferase; phosphoribosyltransferase complement(333806..334513) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402400 YP_003165559.1 CDS CAP2UW1_0273 NC_013194.1 334580 335569 D KEGG: dar:Daro_0618 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 334580..335569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402401 YP_003165560.1 CDS CAP2UW1_0274 NC_013194.1 335576 336463 D TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0619 biotin synthesis protein; biotin biosynthesis protein BioC 335576..336463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402402 YP_003165561.1 CDS CAP2UW1_0275 NC_013194.1 336483 336791 R with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit; acetolactate synthase 1 regulatory subunit complement(336483..336791) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402403 YP_003165562.1 CDS CAP2UW1_0276 NC_013194.1 336795 338474 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: dar:Daro_1620 acetolactate synthase catalytic subunit; acetolactate synthase catalytic subunit complement(336795..338474) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402404 YP_003165563.1 CDS CAP2UW1_0277 NC_013194.1 338889 339608 R PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_1460 hypothetical protein; hypothetical protein complement(338889..339608) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402405 YP_003165564.1 CDS CAP2UW1_0278 NC_013194.1 340095 340598 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_0532 thiol peroxidase (atypical 2-Cys peroxiredoxin); Redoxin domain-containing protein 340095..340598 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402406 YP_003165565.1 CDS CAP2UW1_0279 NC_013194.1 340651 341529 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dar:Daro_0804 regulatory proteins, IclR; IclR family transcriptional regulator 340651..341529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402407 YP_003165566.1 CDS CAP2UW1_0280 NC_013194.1 341522 341779 D PFAM: protein of unknown function UPF0153; KEGG: bpt:Bpet3113 hypothetical protein; hypothetical protein 341522..341779 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402408 YP_003165567.1 CDS CAP2UW1_0281 NC_013194.1 341813 342637 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 341813..342637 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402409 YP_003165568.1 CDS CAP2UW1_0282 NC_013194.1 342639 343211 D PFAM: protein of unknown function UPF0227; KEGG: dar:Daro_3910 hypothetical protein; hypothetical protein 342639..343211 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402410 YP_003165569.1 CDS CAP2UW1_0283 NC_013194.1 343220 345136 D PFAM: ribonuclease II; KEGG: dar:Daro_3909 ribonuclease II; ribonuclease II 343220..345136 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402411 YP_003165570.1 CDS CAP2UW1_0284 NC_013194.1 345138 346022 D TIGRFAM: TonB family protein; KEGG: dar:Daro_3908 TonB, C-terminal; TonB family protein 345138..346022 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402412 YP_003165571.1 CDS CAP2UW1_0285 NC_013194.1 346030 346854 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: dar:Daro_3907 shikimate dehydrogenase; shikimate 5-dehydrogenase 346030..346854 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402413 YP_003165572.1 CDS mtgA NC_013194.1 346851 347546 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 346851..347546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402414 YP_003165573.1 CDS CAP2UW1_0287 NC_013194.1 347623 348132 D KEGG: rfr:Rfer_3310 hypothetical protein; hypothetical protein 347623..348132 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402415 YP_003165574.1 CDS CAP2UW1_0288 NC_013194.1 348180 349604 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mms:mma_1202 ATP-dependent RNA helicase; DEAD/DEAH box helicase domain-containing protein complement(348180..349604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402416 YP_003165575.1 CDS CAP2UW1_0289 NC_013194.1 349863 350456 R PFAM: Chorismate lyase; KEGG: eba:ebA2295 chorismate:pyruvate lyase, 4-hydroxybenzoate synthetase; Chorismate lyase complement(349863..350456) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402417 YP_003165576.1 CDS CAP2UW1_0290 NC_013194.1 350484 350924 R PFAM: protein of unknown function DUF192; KEGG: dar:Daro_3253 protein of unknown function DUF192; hypothetical protein complement(350484..350924) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402418 YP_003165577.1 CDS CAP2UW1_0291 NC_013194.1 351017 351343 R KEGG: spu:576916 hypothetical LOC576916; hypothetical protein complement(351017..351343) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402419 YP_003165578.1 CDS CAP2UW1_0292 NC_013194.1 351408 352997 R PFAM: cytochrome d1 heme region; KEGG: dar:Daro_3260 cytochrome d1, heme region; cytochrome d1 heme region complement(351408..352997) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402420 YP_003165579.1 CDS CAP2UW1_0293 NC_013194.1 352994 354190 R PFAM: Radical SAM domain protein; KEGG: dar:Daro_3261 radical SAM; Radical SAM domain-containing protein complement(352994..354190) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402421 YP_003165580.1 CDS CAP2UW1_0294 NC_013194.1 354475 355299 D PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 probable transmembrane protein; mechanosensitive ion channel protein MscS 354475..355299 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402422 YP_003165581.1 CDS CAP2UW1_0295 NC_013194.1 355352 356512 D PFAM: phospholipase D/Transphosphatidylase; KEGG: dar:Daro_3768 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 355352..356512 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402423 YP_003165582.1 CDS CAP2UW1_0296 NC_013194.1 356494 357453 R PFAM: glutamyl-tRNA synthetase class Ic; KEGG: dar:Daro_3769 glutamyl-Q tRNA(Asp) synthetase; glutamate--tRNA ligase complement(356494..357453) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402424 YP_003165583.1 CDS CAP2UW1_0297 NC_013194.1 357574 358461 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 357574..358461 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402425 YP_003165584.1 CDS CAP2UW1_0298 NC_013194.1 358565 359131 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dar:Daro_0628 HAD-superfamily hydrolase subfamily IA, variant 3:pyrimidine 5-nucleotidase; pyrimidine 5'-nucleotidase 358565..359131 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402426 YP_003165585.1 CDS CAP2UW1_0299 NC_013194.1 359151 363134 D KEGG: pau:PA14_07500 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 359151..363134 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402427 YP_003165586.1 CDS CAP2UW1_0300 NC_013194.1 363127 364221 D PFAM: acyltransferase 3; KEGG: rme:Rmet_4573 acyltransferase 3; acyltransferase 3 363127..364221 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402428 YP_003165587.1 CDS CAP2UW1_0301 NC_013194.1 364205 365221 R PFAM: delta-aminolevulinic acid dehydratase; KEGG: eba:ebA1071 delta-aminolevulinic acid dehydratase; Porphobilinogen synthase complement(364205..365221) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402429 YP_003165588.1 CDS engB NC_013194.1 365409 366113 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(365409..366113) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402430 YP_003165589.1 CDS CAP2UW1_0303 NC_013194.1 366245 366880 D PFAM: cytochrome c class I; KEGG: dar:Daro_0624 cytochrome c, class I; cytochrome c class I 366245..366880 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402431 YP_003165590.1 CDS CAP2UW1_0304 NC_013194.1 367009 367440 D PFAM: CBS domain containing protein; KEGG: dar:Daro_0623 CBS; CBS domain containing membrane protein 367009..367440 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402432 YP_003165591.1 CDS CAP2UW1_0305 NC_013194.1 367546 368184 R PFAM: Phosphoglycerate mutase; KEGG: dar:Daro_0602 phosphoglycerate mutase; phosphoglycerate mutase complement(367546..368184) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402433 YP_003165592.1 CDS CAP2UW1_0306 NC_013194.1 368668 369141 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo2931 hypothetical protein; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein 368668..369141 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402434 YP_003165593.1 CDS CAP2UW1_0307 NC_013194.1 369154 371001 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: azo:azo2930 probable aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 369154..371001 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402435 YP_003165594.1 CDS CAP2UW1_0308 NC_013194.1 371003 372253 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ajs:Ajs_3945 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 371003..372253 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402436 YP_003165595.1 CDS CAP2UW1_0309 NC_013194.1 372253 372507 D PFAM: thiamineS protein; KEGG: lch:Lcho_1819 thiamineS protein; sulfur transfer protein ThiS 372253..372507 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402437 YP_003165596.1 CDS CAP2UW1_0310 NC_013194.1 372526 372789 D hypothetical protein 372526..372789 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402438 YP_003165597.1 CDS CAP2UW1_0311 NC_013194.1 373033 374694 D KEGG: dar:Daro_0806 AAA ATPase, central region; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 373033..374694 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402440 YP_003165598.1 CDS CAP2UW1_0312 NC_013194.1 374734 375057 D PFAM: conserved hypothetical protein; KEGG: dar:Daro_0807 conserved hypothetical protein 103; hypothetical protein 374734..375057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402441 YP_003165599.1 CDS recR NC_013194.1 375057 375659 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 375057..375659 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402442 YP_003165600.1 CDS CAP2UW1_0314 NC_013194.1 375760 376356 D KEGG: dar:Daro_0809 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 375760..376356 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402443 YP_003165601.1 CDS CAP2UW1_0315 NC_013194.1 376360 377679 D PFAM: Cytochrome b/b6 domain; KEGG: dar:Daro_0810 cytochrome b/b6, N-terminal:cytochrome b/b6, C-terminal; cytochrome b/b6 domain-containing protein 376360..377679 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402444 YP_003165602.1 CDS CAP2UW1_0316 NC_013194.1 377693 378403 D PFAM: cytochrome c1; KEGG: dar:Daro_0811 cytochrome c1; cytochrome c1 377693..378403 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402445 YP_003165603.1 CDS CAP2UW1_0317 NC_013194.1 378507 379103 D PFAM: Glutathione S-transferase domain; KEGG: dar:Daro_0812 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal; glutathione S-transferase domain-containing protein 378507..379103 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402446 YP_003165604.1 CDS CAP2UW1_0318 NC_013194.1 379179 379595 D PFAM: Stringent starvation protein B; KEGG: dar:Daro_0813 ClpXP protease specificity-enhancing factor; ClpXP protease specificity-enhancing factor 379179..379595 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402447 YP_003165605.1 CDS CAP2UW1_0319 NC_013194.1 380125 380682 R KEGG: cvi:CV_1155 hypothetical protein; hypothetical protein complement(380125..380682) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402448 YP_003165606.1 CDS CAP2UW1_0320 NC_013194.1 380697 381398 R hypothetical protein complement(380697..381398) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402449 YP_003165607.1 CDS CAP2UW1_0321 NC_013194.1 381512 381799 R TIGRFAM: addiction module antidote protein; KEGG: dvl:Dvul_1443 putative transcriptional regulator; putative transcriptional regulator complement(381512..381799) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402450 YP_003165608.1 CDS CAP2UW1_0322 NC_013194.1 381834 382082 D hypothetical protein 381834..382082 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402451 YP_003165609.1 CDS CAP2UW1_0323 NC_013194.1 382470 386345 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: dar:Daro_4121 protein of unknown function DUF224, cysteine-rich region:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; FAD linked oxidase domain-containing protein 382470..386345 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402452 YP_003165610.1 CDS CAP2UW1_0324 NC_013194.1 386408 387193 D KEGG: pol:Bpro_0503 hypothetical protein; hypothetical protein 386408..387193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402453 YP_003165611.1 CDS CAP2UW1_0325 NC_013194.1 387190 389064 D PFAM: protein of unknown function DUF802; KEGG: bxe:Bxe_B0803 putative transmembrane protein; hypothetical protein 387190..389064 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402454 YP_003165612.1 CDS CAP2UW1_0326 NC_013194.1 389064 389708 D PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_0505 hypothetical protein; hypothetical protein 389064..389708 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402455 YP_003165613.1 CDS CAP2UW1_0327 NC_013194.1 389701 390438 D KEGG: pol:Bpro_0506 hypothetical protein; hypothetical protein 389701..390438 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402456 YP_003165614.1 CDS CAP2UW1_0328 NC_013194.1 390668 390817 D KEGG: dar:Daro_3118 hypothetical protein; hypothetical protein 390668..390817 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402457 YP_003165615.1 CDS CAP2UW1_0329 NC_013194.1 390884 393142 D KEGG: acr:Acry_3541 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; helicase, RecD/TraA family 390884..393142 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402458 YP_003165616.1 CDS CAP2UW1_0330 NC_013194.1 393306 393746 D PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_4120 histidine triad (HIT) protein; histidine triad (HIT) protein 393306..393746 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402459 YP_003165617.1 CDS CAP2UW1_0331 NC_013194.1 393787 395397 D KEGG: dar:Daro_4119 hypothetical protein; hypothetical protein 393787..395397 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402460 YP_003165618.1 CDS CAP2UW1_0332 NC_013194.1 395901 396524 D KEGG: xac:XAC4267 hypothetical protein; hypothetical protein 395901..396524 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402461 YP_003165619.1 CDS CAP2UW1_0333 NC_013194.1 396639 397598 R PFAM: regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: rpb:RPB_1819 transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(396639..397598) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402462 YP_003165620.1 CDS CAP2UW1_0334 NC_013194.1 397901 403450 D KEGG: bch:Bcen2424_6767 outer membrane autotransporter barrel domain; hypothetical protein 397901..403450 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402463 YP_003165621.1 CDS CAP2UW1_0335 NC_013194.1 403522 403806 D hypothetical protein 403522..403806 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402464 YP_003165622.1 CDS CAP2UW1_0336 NC_013194.1 403812 404111 D hypothetical protein 403812..404111 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402465 YP_003165623.1 CDS CAP2UW1_0337 NC_013194.1 404345 405988 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_4199 cobalamin B12-binding:radical SAM; Radical SAM domain-containing protein 404345..405988 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402466 YP_003165624.1 CDS CAP2UW1_0338 NC_013194.1 406043 407380 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: dar:Daro_4197 monooxygenase, FAD-binding:FAD dependent oxidoreductase:tryptophan halogenase; tryptophan halogenase 406043..407380 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402467 YP_003165625.1 CDS CAP2UW1_0339 NC_013194.1 407377 408405 D KEGG: dar:Daro_4196 endoribonuclease L-PSP; endoribonuclease L-PSP 407377..408405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402468 YP_003165626.1 CDS CAP2UW1_0340 NC_013194.1 408405 409253 D PFAM: MltA-interacting MipA family protein; KEGG: dar:Daro_4195 putative outer membrane protein; MltA-interacting MipA family protein 408405..409253 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402469 YP_003165627.1 CDS CAP2UW1_0341 NC_013194.1 409246 410049 D PFAM: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_4194 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 409246..410049 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402470 YP_003165628.1 CDS CAP2UW1_0342 NC_013194.1 410070 410828 D PFAM: glycosyl transferase family 2; KEGG: dar:Daro_4193 glycosyl transferase, family 2; family 2 glycosyl transferase 410070..410828 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402471 YP_003165629.1 CDS CAP2UW1_0343 NC_013194.1 410918 412117 D PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_1412 sodium/hydrogen exchanger; sodium/hydrogen exchanger 410918..412117 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402472 YP_003165630.1 CDS CAP2UW1_0344 NC_013194.1 412587 414650 D PFAM: N-6 DNA methylase; KEGG: aav:Aave_3359 N-6 DNA methylase; N-6 DNA methylase 412587..414650 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402473 YP_003165631.1 CDS CAP2UW1_0345 NC_013194.1 414647 416548 D PFAM: AAA-4 family protein; KEGG: tbd:Tbd_2681 predicted transcriptional regulator; putative transcriptional regulator 414647..416548 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402474 YP_003165632.1 CDS CAP2UW1_0346 NC_013194.1 416545 416658 D hypothetical protein 416545..416658 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402475 YP_003165633.1 CDS CAP2UW1_0347 NC_013194.1 416658 417911 D KEGG: aeh:Mlg_1791 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein-containing protein 416658..417911 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402476 YP_003165634.1 CDS CAP2UW1_0348 NC_013194.1 417908 418483 D KEGG: cpc:Cpar_0215 hypothetical protein; hypothetical protein 417908..418483 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402477 YP_003165635.1 CDS CAP2UW1_0349 NC_013194.1 418480 418665 D hypothetical protein 418480..418665 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402478 YP_003165636.1 CDS CAP2UW1_0351 NC_013194.1 419877 421403 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 419877..421403 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402480 YP_003165637.1 CDS CAP2UW1_0352 NC_013194.1 421459 422262 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein 421459..422262 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402481 YP_003165638.1 CDS CAP2UW1_0353 NC_013194.1 424801 426315 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: xau:Xaut_0423 protein of unknown function DUF1214; hypothetical protein 424801..426315 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402482 YP_003165639.1 CDS CAP2UW1_0357 NC_013194.1 427724 428017 R PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: smr:Smar_0994 MazG nucleotide pyrophosphohydrolase; MazG nucleotide pyrophosphohydrolase complement(427724..428017) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402486 YP_003165640.1 CDS CAP2UW1_0358 NC_013194.1 428014 428523 R hypothetical protein complement(428014..428523) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402487 YP_003165641.1 CDS CAP2UW1_0359 NC_013194.1 428592 429950 R PFAM: transposase IS4 family protein; KEGG: eba:p2A146 probable transposase; transposase IS4 family protein complement(428592..429950) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402488 YP_003165642.1 CDS CAP2UW1_0360 NC_013194.1 429922 431391 R KEGG: mac:MA4317 phycocyanin alpha phycocyanobilin lyase related protein; hypothetical protein complement(429922..431391) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402489 YP_003165643.1 CDS CAP2UW1_0361 NC_013194.1 431388 432041 R hypothetical protein complement(431388..432041) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402490 YP_003165644.1 CDS CAP2UW1_0362 NC_013194.1 432901 433905 R KEGG: mca:MCA0474 ATP-dependent DNA helicase, UvrD/REP family; ATP-dependent DNA helicase, UvrD/REP family complement(432901..433905) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402491 YP_003165645.1 CDS CAP2UW1_0363 NC_013194.1 433929 435338 D PFAM: filamentation induced by cAMP protein Fic; KEGG: vei:Veis_4167 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 433929..435338 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402492 YP_003165646.1 CDS CAP2UW1_0364 NC_013194.1 435477 440702 R KEGG: mca:MCA0474 ATP-dependent DNA helicase, UvrD/REP family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: UvrD/REP helicase; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase, RecQ family complement(435477..440702) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402493 YP_003165647.1 CDS fabG NC_013194.1 440725 441444 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(440725..441444) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402494 YP_003165648.1 CDS CAP2UW1_0366 NC_013194.1 441441 441893 R KEGG: dar:Daro_4187 hypothetical protein; hypothetical protein complement(441441..441893) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402495 YP_003165649.1 CDS CAP2UW1_0367 NC_013194.1 441887 442690 R KEGG: dar:Daro_4186 hypothetical protein; hypothetical protein complement(441887..442690) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402496 YP_003165650.1 CDS CAP2UW1_0368 NC_013194.1 442687 443880 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I complement(442687..443880) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402497 YP_003165651.1 CDS CAP2UW1_0369 NC_013194.1 443966 444703 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4180 hypothetical protein; type 12 methyltransferase complement(443966..444703) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402498 YP_003165652.1 CDS CAP2UW1_0370 NC_013194.1 444700 445500 R PFAM: polysaccharide deacetylase; KEGG: dar:Daro_4179 polysaccharide deacetylase; polysaccharide deacetylase complement(444700..445500) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402499 YP_003165653.1 CDS CAP2UW1_0371 NC_013194.1 445506 446153 R KEGG: dar:Daro_4178 hypothetical protein; hypothetical protein complement(445506..446153) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402500 YP_003165654.1 CDS CAP2UW1_0372 NC_013194.1 446150 448519 R KEGG: dar:Daro_4177 probable transmembrane protein; putative transmembrane protein complement(446150..448519) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402501 YP_003165655.1 CDS CAP2UW1_0373 NC_013194.1 448516 449082 R KEGG: dar:Daro_4176 hypothetical protein; hypothetical protein complement(448516..449082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402502 YP_003165656.1 CDS CAP2UW1_0374 NC_013194.1 449079 449993 R PFAM: lipid A biosynthesis acyltransferase; KEGG: dar:Daro_4175 putative lauroyl/myristoyl acyltransferase involved in LPS biosynthesis; lipid A biosynthesis acyltransferase complement(449079..449993) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402503 YP_003165657.1 CDS CAP2UW1_0375 NC_013194.1 449990 450292 R KEGG: dar:Daro_4174 hypothetical protein; hypothetical protein complement(449990..450292) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402504 YP_003165658.1 CDS CAP2UW1_0376 NC_013194.1 450279 451634 R KEGG: dar:Daro_4173 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(450279..451634) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402505 YP_003165659.1 CDS CAP2UW1_0377 NC_013194.1 451631 452302 R KEGG: dar:Daro_4172 transmembrane protein; hypothetical protein complement(451631..452302) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402506 YP_003165660.1 CDS CAP2UW1_0378 NC_013194.1 452299 452583 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(452299..452583) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402507 YP_003165661.1 CDS CAP2UW1_0379 NC_013194.1 452602 453855 R PFAM: Beta-ketoacyl synthase; KEGG: dar:Daro_4170 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase complement(452602..453855) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402508 YP_003165662.1 CDS CAP2UW1_0380 NC_013194.1 453859 454098 R PFAM: phosphopantetheine-binding; KEGG: dar:Daro_4169 phosphopantetheine-binding; phosphopantetheine-binding complement(453859..454098) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402509 YP_003165663.1 CDS CAP2UW1_0381 NC_013194.1 454285 455823 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: azo:azo2191 probable virulence factor; integral membrane protein MviN 454285..455823 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402510 YP_003165664.1 CDS CAP2UW1_0382 NC_013194.1 455843 456472 D PFAM: PEBP family protein; KEGG: dar:Daro_0707 phospholipid-binding protein, PBP family; PEBP family protein 455843..456472 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402511 YP_003165665.1 CDS CAP2UW1_0383 NC_013194.1 456948 457691 D KEGG: bta:788954 hypothetical protein LOC788954; hypothetical protein 456948..457691 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402512 YP_003165666.1 CDS hppA NC_013194.1 457678 460098 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(457678..460098) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402513 YP_003165667.1 CDS CAP2UW1_0385 NC_013194.1 460383 461036 R PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: azo:azo1473 adenylate kinase; Nucleoside-triphosphate--adenylate kinase complement(460383..461036) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402514 YP_003165668.1 CDS CAP2UW1_0386 NC_013194.1 461168 461932 R KEGG: dar:Daro_3206 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(461168..461932) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402515 YP_003165669.1 CDS CAP2UW1_0387 NC_013194.1 461951 462127 R PFAM: protein of unknown function DUF343; KEGG: dar:Daro_3207 protein of unknown function DUF343; hypothetical protein complement(461951..462127) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402516 YP_003165670.1 CDS CAP2UW1_0388 NC_013194.1 462108 463154 R KEGG: dar:Daro_3208 lipid-A-disaccharide synthase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(462108..463154) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402517 YP_003165671.1 CDS CAP2UW1_0389 NC_013194.1 463154 463570 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dar:Daro_3209 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR complement(463154..463570) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402518 YP_003165672.1 CDS CAP2UW1_0390 NC_013194.1 463586 464245 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: dar:Daro_3210 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(463586..464245) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402519 YP_003165673.1 CDS CAP2UW1_0391 NC_013194.1 464389 465600 R KEGG: rfr:Rfer_0638 hypothetical protein; hypothetical protein complement(464389..465600) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402520 YP_003165674.1 CDS CAP2UW1_0392 NC_013194.1 465641 466369 R KEGG: pna:Pnap_3251 hypothetical protein; hypothetical protein complement(465641..466369) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402521 YP_003165675.1 CDS CAP2UW1_0393 NC_013194.1 466374 466904 R KEGG: rfr:Rfer_0640 hypothetical protein; hypothetical protein complement(466374..466904) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402522 YP_003165676.1 CDS CAP2UW1_0394 NC_013194.1 466901 467179 R PFAM: heat shock protein DnaJ domain protein; KEGG: rfr:Rfer_0641 heat shock protein DnaJ-like; heat shock protein DnaJ domain-containing protein complement(466901..467179) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402523 YP_003165677.1 CDS CAP2UW1_0395 NC_013194.1 467181 468020 R KEGG: nmu:Nmul_A2539 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(467181..468020) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402524 YP_003165678.1 CDS CAP2UW1_0396 NC_013194.1 468031 468381 R PFAM: membrane protein of unknown function; KEGG: bpt:Bpet4762 hypothetical protein; hypothetical protein complement(468031..468381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402525 YP_003165679.1 CDS CAP2UW1_0397 NC_013194.1 468407 469816 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(468407..469816) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402526 YP_003165680.1 CDS CAP2UW1_0398 NC_013194.1 470091 470465 R KEGG: dar:Daro_0069 hypothetical protein; hypothetical protein complement(470091..470465) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402527 YP_003165681.1 CDS CAP2UW1_0399 NC_013194.1 470465 471361 R PFAM: conserved hypothetical protein; KEGG: dar:Daro_0070 hypothetical protein; hypothetical protein complement(470465..471361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402528 YP_003165682.1 CDS CAP2UW1_0400 NC_013194.1 471431 472621 D KEGG: dar:Daro_0071 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 471431..472621 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402529 YP_003165683.1 CDS CAP2UW1_0401 NC_013194.1 472964 473644 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_0429 response regulator receiver:transcriptional regulatory protein, C-terminal; winged helix family two component transcriptional regulator 472964..473644 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402530 YP_003165684.1 CDS CAP2UW1_0402 NC_013194.1 473682 475106 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Two-component sensor kinase domain protein; KEGG: dar:Daro_0430 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 473682..475106 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402531 YP_003165685.1 CDS CAP2UW1_0403 NC_013194.1 475132 475365 R hypothetical protein complement(475132..475365) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402532 YP_003165686.1 CDS CAP2UW1_0404 NC_013194.1 475434 475880 R PFAM: protein of unknown function DUF188; KEGG: dar:Daro_2879 protein of unknown function DUF188; hypothetical protein complement(475434..475880) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402533 YP_003165687.1 CDS CAP2UW1_0405 NC_013194.1 475890 478634 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_4157 ATPase, E1-E2 type; HAD superfamily P-type ATPase complement(475890..478634) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402534 YP_003165688.1 CDS CAP2UW1_0406 NC_013194.1 478926 479936 D KEGG: cre:CHLREDRAFT_141024 hypothetical protein Pfam: Drf_FH1 PROSITE: ALA_RICH GLU_RICH GLY_RICH PRO_RICH NLS_BP; hypothetical protein 478926..479936 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402535 YP_003165689.1 CDS CAP2UW1_0407 NC_013194.1 480120 481280 D PFAM: transposase IS4 family protein; KEGG: amr:AM1_5147 transposase, IS4 family; transposase IS4 family protein 480120..481280 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402536 YP_003165690.1 CDS CAP2UW1_0408 NC_013194.1 481413 483053 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 481413..483053 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402537 YP_003165691.1 CDS CAP2UW1_0409 NC_013194.1 483158 484402 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: dar:Daro_0207 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(483158..484402) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402538 YP_003165692.1 CDS CAP2UW1_0410 NC_013194.1 484639 484956 D TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: dar:Daro_0208 frataxin-like; iron donor protein CyaY 484639..484956 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402539 YP_003165693.1 CDS CAP2UW1_0411 NC_013194.1 484981 485436 R PFAM: Ferritin Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps; Ferritin Dps family protein complement(484981..485436) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402540 YP_003165694.1 CDS CAP2UW1_0412 NC_013194.1 485621 487033 R PFAM: Carbohydrate-selective porin OprB; KEGG: bpd:BURPS668_0296 carbohydrate porin, OprB family; carbohydrate-selective porin OprB complement(485621..487033) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402541 YP_003165695.1 CDS CAP2UW1_0415 NC_013194.1 487624 487971 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(487624..487971) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402544 YP_003165696.1 CDS CAP2UW1_0416 NC_013194.1 487968 488645 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(487968..488645) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402545 YP_003165697.1 CDS CAP2UW1_0417 NC_013194.1 489049 489510 R PFAM: Ferritin Dps family protein; KEGG: nmu:Nmul_A2388 ferritin and Dps; Ferritin Dps family protein complement(489049..489510) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402546 YP_003165698.1 CDS CAP2UW1_0418 NC_013194.1 489655 491001 R PFAM: Carbohydrate-selective porin OprB; KEGG: bvi:Bcep1808_5348 carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(489655..491001) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402547 YP_003165699.1 CDS CAP2UW1_0419 NC_013194.1 491004 491276 R KEGG: mpt:Mpe_A1472 hypothetical protein; hypothetical protein complement(491004..491276) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402548 YP_003165700.1 CDS CAP2UW1_0420 NC_013194.1 491278 493149 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B; ferrous iron transport protein B complement(491278..493149) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402549 YP_003165701.1 CDS CAP2UW1_0421 NC_013194.1 493146 493427 R PFAM: FeoA family protein; KEGG: dac:Daci_2175 FeoA family protein; FeoA family protein complement(493146..493427) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402550 YP_003165702.1 CDS CAP2UW1_0422 NC_013194.1 493768 493911 D hypothetical protein 493768..493911 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402551 YP_003165703.1 CDS CAP2UW1_0423 NC_013194.1 493935 494144 D hypothetical protein 493935..494144 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402552 YP_003165704.1 CDS CAP2UW1_0424 NC_013194.1 494186 495511 D KEGG: sse:Ssed_3646 hypothetical protein; hypothetical protein 494186..495511 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402553 YP_003165705.1 CDS CAP2UW1_0425 NC_013194.1 495561 495917 R KEGG: rfr:Rfer_2680 hypothetical protein; hypothetical protein complement(495561..495917) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402554 YP_003165706.1 CDS CAP2UW1_0426 NC_013194.1 496137 497318 R PFAM: iron permease FTR1; KEGG: ppd:Ppro_0822 iron permease FTR1; iron permease FTR1 complement(496137..497318) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402555 YP_003165707.1 CDS CAP2UW1_0427 NC_013194.1 497385 499550 R PFAM: transglutaminase domain protein; KEGG: ppd:Ppro_0821 transglutaminase domain protein; transglutaminase domain-containing protein complement(497385..499550) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402556 YP_003165708.1 CDS CAP2UW1_0428 NC_013194.1 499547 500443 R PFAM: protein of unknown function DUF58; KEGG: ppd:Ppro_0820 protein of unknown function DUF58; hypothetical protein complement(499547..500443) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402557 YP_003165709.1 CDS CAP2UW1_0429 NC_013194.1 500440 501366 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: maq:Maqu_1752 ATPase associated with various cellular activities, AAA_3; ATPase complement(500440..501366) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402558 YP_003165710.1 CDS CAP2UW1_0430 NC_013194.1 501502 502974 R PFAM: protein of unknown function DUF1111; KEGG: lbl:LBL_0763 thiol oxidoreductase; hypothetical protein complement(501502..502974) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402559 YP_003165711.1 CDS CAP2UW1_0431 NC_013194.1 502990 504090 R KEGG: pcu:pc1077 hypothetical protein; hypothetical protein complement(502990..504090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402560 YP_003165712.1 CDS CAP2UW1_0432 NC_013194.1 504087 506399 R PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ppd:Ppro_0818 type II and III secretion system protein; type II and III secretion system protein complement(504087..506399) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402561 YP_003165713.1 CDS CAP2UW1_0433 NC_013194.1 506396 506992 R hypothetical protein complement(506396..506992) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402562 YP_003165714.1 CDS CAP2UW1_0434 NC_013194.1 506989 507453 R KEGG: ajs:Ajs_3166 hypothetical protein; hypothetical protein complement(506989..507453) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402563 YP_003165715.1 CDS CAP2UW1_0435 NC_013194.1 507461 508693 R PFAM: type II secretion system protein; KEGG: ppd:Ppro_0816 type II secretion system protein; type II secretion system protein complement(507461..508693) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402564 YP_003165716.1 CDS CAP2UW1_0436 NC_013194.1 508704 510311 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ppd:Ppro_0815 type II secretion system protein E; type II secretion system protein E complement(508704..510311) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402565 YP_003165717.1 CDS CAP2UW1_0437 NC_013194.1 510308 511414 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: ppd:Ppro_0814 twitching motility protein; twitching motility protein complement(510308..511414) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402566 YP_003165718.1 CDS CAP2UW1_0438 NC_013194.1 511418 512143 R KEGG: ppd:Ppro_0813 hypothetical protein; hypothetical protein complement(511418..512143) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402567 YP_003165719.1 CDS CAP2UW1_0439 NC_013194.1 512151 514055 R KEGG: ppd:Ppro_0812 hypothetical protein; hypothetical protein complement(512151..514055) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402568 YP_003165720.1 CDS CAP2UW1_0440 NC_013194.1 514052 515134 R KEGG: ppd:Ppro_0811 hypothetical protein; hypothetical protein complement(514052..515134) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402569 YP_003165721.1 CDS CAP2UW1_0441 NC_013194.1 515143 515670 R KEGG: ppd:Ppro_0810 hypothetical protein; hypothetical protein complement(515143..515670) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402570 YP_003165722.1 CDS CAP2UW1_0442 NC_013194.1 515688 516608 R KEGG: ppd:Ppro_0809 hypothetical protein; hypothetical protein complement(515688..516608) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402571 YP_003165723.1 CDS CAP2UW1_0443 NC_013194.1 516727 517665 R KEGG: ppd:Ppro_0807 hypothetical protein; hypothetical protein complement(516727..517665) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402572 YP_003165724.1 CDS CAP2UW1_0444 NC_013194.1 517843 518052 R KEGG: ppd:Ppro_0806 hypothetical protein; hypothetical protein complement(517843..518052) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402573 YP_003165725.1 CDS CAP2UW1_0445 NC_013194.1 518497 519474 R KEGG: eba:ebA4678 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; cysteine synthase A complement(518497..519474) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402574 YP_003165726.1 CDS CAP2UW1_0446 NC_013194.1 519788 520579 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A2852 putative oxidoreductase protein; short-chain dehydrogenase/reductase SDR 519788..520579 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402575 YP_003165727.1 CDS CAP2UW1_0447 NC_013194.1 520612 521028 R hypothetical protein complement(520612..521028) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402576 YP_003165728.1 CDS CAP2UW1_0448 NC_013194.1 521253 522761 R PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0977 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(521253..522761) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402577 YP_003165729.1 CDS CAP2UW1_0449 NC_013194.1 522908 523840 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pna:Pnap_1659 transcriptional regulator, LysR family; LysR family transcriptional regulator 522908..523840 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402578 YP_003165730.1 CDS CAP2UW1_0450 NC_013194.1 523803 524450 R KEGG: ppd:Ppro_3601 transposase, IS4 family protein; hypothetical protein complement(523803..524450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402579 YP_003165731.1 CDS CAP2UW1_0451 NC_013194.1 524709 525947 D hypothetical protein 524709..525947 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402580 YP_003165732.1 CDS CAP2UW1_0452 NC_013194.1 525997 527808 D hypothetical protein 525997..527808 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402581 YP_003165733.1 CDS CAP2UW1_0453 NC_013194.1 527853 530057 R PFAM: protein of unknown function DUF255; KEGG: afw:Anae109_0984 protein of unknown function DUF255; hypothetical protein complement(527853..530057) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402582 YP_003165734.1 CDS CAP2UW1_0454 NC_013194.1 530375 531310 D TIGRFAM: methyltransferase; KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein; methyltransferase 530375..531310 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402583 YP_003165735.1 CDS CAP2UW1_0455 NC_013194.1 531333 532604 D PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323; hypothetical protein 531333..532604 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402584 YP_003165736.1 CDS CAP2UW1_0456 NC_013194.1 533328 534455 D KEGG: vei:Veis_2578 hypothetical protein; hypothetical protein 533328..534455 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402585 YP_003165737.1 CDS CAP2UW1_0457 NC_013194.1 534458 544924 D PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: ppd:Ppro_2370 Ig family protein; Hemolysin-type calcium-binding domain-containing protein 534458..544924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402586 YP_003165738.1 CDS CAP2UW1_0458 NC_013194.1 545111 547264 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2547 ABC transporter related; ABC transporter 545111..547264 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402587 YP_003165739.1 CDS rpsU NC_013194.1 547439 547651 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 547439..547651 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402588 YP_003165740.1 CDS CAP2UW1_0460 NC_013194.1 547777 548226 D KEGG: mms:mma_0491 hypothetical protein; hypothetical protein 547777..548226 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402589 YP_003165741.1 CDS CAP2UW1_0461 NC_013194.1 548270 550015 D KEGG: dar:Daro_0527 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 548270..550015 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402590 YP_003165742.1 CDS CAP2UW1_0462 NC_013194.1 550067 552013 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 550067..552013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402591 YP_003165743.1 CDS CAP2UW1_0463 NC_013194.1 552113 552943 R hypothetical protein complement(552113..552943) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402592 YP_003165744.1 CDS CAP2UW1_0464 NC_013194.1 553341 555299 D KEGG: hau:Haur_1773 hypothetical protein; hypothetical protein 553341..555299 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402593 YP_003165745.1 CDS CAP2UW1_0465 NC_013194.1 555316 555816 D KEGG: hau:Haur_1774 hypothetical protein; hypothetical protein 555316..555816 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402594 YP_003165746.1 CDS CAP2UW1_0466 NC_013194.1 555860 556423 D KEGG: hau:Haur_1775 hypothetical protein; hypothetical protein 555860..556423 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402595 YP_003165747.1 CDS CAP2UW1_0467 NC_013194.1 556420 557670 D KEGG: dme:Dmel_CG32656 CG32656; hypothetical protein 556420..557670 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402596 YP_003165748.1 CDS CAP2UW1_0468 NC_013194.1 557672 558268 D KEGG: hau:Haur_1778 hypothetical protein; hypothetical protein 557672..558268 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402597 YP_003165749.1 CDS CAP2UW1_0469 NC_013194.1 558265 561675 D KEGG: met:M446_6067 hypothetical protein; hypothetical protein 558265..561675 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402598 YP_003165750.1 CDS CAP2UW1_0470 NC_013194.1 561672 563840 D TIGRFAM: YD repeat protein; KEGG: afw:Anae109_2325 YD repeat protein; YD repeat-containing protein 561672..563840 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402599 YP_003165751.1 CDS CAP2UW1_0471 NC_013194.1 563840 564901 D KEGG: hau:Haur_1780 hypothetical protein; hypothetical protein 563840..564901 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402600 YP_003165752.1 CDS CAP2UW1_0472 NC_013194.1 564898 565602 D KEGG: rci:RCIX1671 hypothetical protein; hypothetical protein 564898..565602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402601 YP_003165753.1 CDS CAP2UW1_0473 NC_013194.1 565602 566042 D hypothetical protein 565602..566042 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402602 YP_003165754.1 CDS CAP2UW1_0474 NC_013194.1 566039 566779 D hypothetical protein 566039..566779 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402603 YP_003165755.1 CDS CAP2UW1_0475 NC_013194.1 566793 567233 D KEGG: hau:Haur_1783 gpW/GP25 family protein; gpW/GP25 family protein 566793..567233 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402604 YP_003165756.1 CDS CAP2UW1_0476 NC_013194.1 567230 569182 D KEGG: rci:RCIX1676 hypothetical protein; hypothetical protein 567230..569182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402605 YP_003165757.1 CDS CAP2UW1_0477 NC_013194.1 569191 570516 D KEGG: rci:RCIX1677 hypothetical protein; hypothetical protein 569191..570516 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402606 YP_003165758.1 CDS CAP2UW1_0478 NC_013194.1 570537 571013 D KEGG: hau:Haur_1786 hypothetical protein; hypothetical protein 570537..571013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402607 YP_003165759.1 CDS CAP2UW1_0479 NC_013194.1 571039 572556 D KEGG: cau:Caur_0299 hypothetical protein; hypothetical protein 571039..572556 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402608 YP_003165760.1 CDS CAP2UW1_0480 NC_013194.1 572623 572829 D KEGG: mba:Mbar_A2995 hypothetical protein; hypothetical protein 572623..572829 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402609 YP_003165761.1 CDS CAP2UW1_0481 NC_013194.1 572836 573609 D hypothetical protein 572836..573609 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402610 YP_003165762.1 CDS CAP2UW1_0482 NC_013194.1 573628 578661 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: mbu:Mbur_0937 KP-43 peptidase. Serine peptidase. MEROPS family S08A; peptidase S8/S53 subtilisin kexin sedolisin 573628..578661 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402611 YP_003165763.1 CDS CAP2UW1_0483 NC_013194.1 578723 579952 D PFAM: PGAP1 family protein; KEGG: aba:Acid345_4373 PGAP1-like; PGAP1 family protein 578723..579952 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402612 YP_003165764.1 CDS CAP2UW1_0484 NC_013194.1 579992 582457 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_0058 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase with extracellular sensor complement(579992..582457) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402613 YP_003165765.1 CDS CAP2UW1_0485 NC_013194.1 582454 583314 R KEGG: dar:Daro_4085 ABC-type phosphate/phosphonate transport system periplasmic component-like protein; phosphate/phosphonate ABC transporter membrane protein complement(582454..583314) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402614 YP_003165766.1 CDS CAP2UW1_0486 NC_013194.1 583531 584298 R PFAM: triosephosphate isomerase; KEGG: drm:Dred_2989 triose-phosphate isomerase; Triose-phosphate isomerase complement(583531..584298) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402615 YP_003165767.1 CDS CAP2UW1_0487 NC_013194.1 584372 585628 R PFAM: phosphoglycerate kinase; KEGG: ote:Oter_3826 phosphoglycerate kinase; phosphoglycerate kinase complement(584372..585628) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402616 YP_003165768.1 CDS CAP2UW1_0488 NC_013194.1 585976 587733 R PFAM: Carbamoyltransferase; KEGG: eba:ebA3984 carbamoyltransferase, NodU family; carbamoyltransferase complement(585976..587733) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402617 YP_003165769.1 CDS CAP2UW1_0489 NC_013194.1 587921 588796 R PFAM: lipid A biosynthesis acyltransferase; KEGG: eba:ebA3949 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase complement(587921..588796) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402618 YP_003165770.1 CDS CAP2UW1_0490 NC_013194.1 589188 590498 D KEGG: dar:Daro_0269 hypothetical protein; hypothetical protein 589188..590498 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402619 YP_003165771.1 CDS CAP2UW1_0491 NC_013194.1 590551 591669 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: eba:ebA3764 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(590551..591669) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402620 YP_003165772.1 CDS CAP2UW1_0492 NC_013194.1 591838 595104 D KEGG: dar:Daro_0243 methylmalonyl-CoA mutase, N-terminal:methylmalonyl-CoA mutase, C-terminal; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: ArgK protein; methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 591838..595104 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402621 YP_003165773.1 CDS CAP2UW1_0493 NC_013194.1 595272 596573 D PFAM: acetyl-CoA hydrolase/transferase; KEGG: rfr:Rfer_0716 acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase/transferase 595272..596573 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402622 YP_003165774.1 CDS CAP2UW1_0494 NC_013194.1 596682 597920 R PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: ter:Tery_3999 adenylate/guanylate cyclase; adenylate/guanylate cyclase complement(596682..597920) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402623 YP_003165775.1 CDS CAP2UW1_0495 NC_013194.1 598145 599596 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: eba:ebA6855 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 598145..599596 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402624 YP_003165776.1 CDS CAP2UW1_0496 NC_013194.1 599878 600183 D KEGG: dar:Daro_0856 hypothetical protein; hypothetical protein 599878..600183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402625 YP_003165777.1 CDS CAP2UW1_0497 NC_013194.1 600267 601922 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: dar:Daro_0932 DNA repair protein RecN; DNA repair protein RecN complement(600267..601922) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402626 YP_003165778.1 CDS CAP2UW1_0498 NC_013194.1 601946 602872 R PFAM: ATP-NAD/AcoX kinase; KEGG: dar:Daro_0931 ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase complement(601946..602872) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402627 YP_003165779.1 CDS hrcA NC_013194.1 602948 603976 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 602948..603976 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402628 YP_003165780.1 CDS hemH NC_013194.1 603976 605079 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 603976..605079 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402629 YP_003165781.1 CDS CAP2UW1_0501 NC_013194.1 605117 606469 R PFAM: cyclic nucleotide-binding; protein of unknown function RIO1; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_0925 cyclic nucleotide-binding:protein kinase; cyclic nucleotide-binding protein complement(605117..606469) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402630 YP_003165782.1 CDS CAP2UW1_0502 NC_013194.1 606648 607214 D PFAM: GrpE protein; KEGG: dar:Daro_0924 GrpE protein; GrpE protein 606648..607214 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402631 YP_003165783.1 CDS dnaK NC_013194.1 607311 609239 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 607311..609239 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402632 YP_003165784.1 CDS CAP2UW1_0504 NC_013194.1 609309 610430 D TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dar:Daro_0922 heat shock protein DnaJ; chaperone protein DnaJ 609309..610430 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402633 YP_003165785.1 CDS CAP2UW1_0505 NC_013194.1 610612 611754 D PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_0920 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 610612..611754 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402634 YP_003165786.1 CDS CAP2UW1_0506 NC_013194.1 611819 613192 R KEGG: dar:Daro_0919 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; cysteinyl-tRNA synthetase complement(611819..613192) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402635 YP_003165787.1 CDS CAP2UW1_0507 NC_013194.1 613301 614293 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_0918 TPR repeat; TPR repeat-containing protein 613301..614293 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402636 YP_003165788.1 CDS CAP2UW1_0508 NC_013194.1 614354 614944 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: ajs:Ajs_1621 peptidylprolyl isomerase; peptidylprolyl isomerase 614354..614944 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402637 YP_003165789.1 CDS CAP2UW1_0509 NC_013194.1 614941 615432 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dar:Daro_0915 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 614941..615432 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402638 YP_003165790.1 CDS CAP2UW1_0510 NC_013194.1 615494 617308 D KEGG: dar:Daro_0913 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 615494..617308 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402639 YP_003165791.1 CDS CAP2UW1_0511 NC_013194.1 617320 618852 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: neu:NE2123 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(617320..618852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402640 YP_003165792.1 CDS CAP2UW1_0512 NC_013194.1 618912 619769 D KEGG: dar:Daro_2380 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 618912..619769 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402641 YP_003165793.1 CDS CAP2UW1_0513 NC_013194.1 619805 619942 D hypothetical protein 619805..619942 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402642 YP_003165794.1 CDS CAP2UW1_0514 NC_013194.1 620017 621504 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(620017..621504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402643 YP_003165795.1 CDS CAP2UW1_0515 NC_013194.1 621609 622340 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: har:HEAR1864 hypothetical protein; diguanylate cyclase complement(621609..622340) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402644 YP_003165796.1 CDS CAP2UW1_0516 NC_013194.1 622461 623594 R KEGG: dar:Daro_2383 hypothetical protein; hypothetical protein complement(622461..623594) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402645 YP_003165797.1 CDS CAP2UW1_0517 NC_013194.1 623695 623952 R KEGG: dar:Daro_2384 hypothetical protein; hypothetical protein complement(623695..623952) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402646 YP_003165798.1 CDS CAP2UW1_0518 NC_013194.1 624413 626026 D PFAM: MORN repeat-containing protein; peptidase C14 caspase catalytic subunit p20; SMART: Peptidase C14, caspase precursor p45, core; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 624413..626026 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402647 YP_003165799.1 CDS CAP2UW1_0519 NC_013194.1 626072 627865 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: azc:AZC_3466 TPR repeat protein; TPR repeat-containing protein 626072..627865 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402648 YP_003165800.1 CDS CAP2UW1_0520 NC_013194.1 628027 628560 D KEGG: dar:Daro_2833 hypothetical protein; hypothetical protein 628027..628560 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402649 YP_003165801.1 CDS CAP2UW1_0521 NC_013194.1 628730 630898 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; Cache type 2 domain protein; KEGG: glo:Glov_0461 methyl-accepting chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 628730..630898 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402650 YP_003165802.1 CDS CAP2UW1_0522 NC_013194.1 630980 632275 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1; major facilitator superfamily protein 630980..632275 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402651 YP_003165803.1 CDS CAP2UW1_0523 NC_013194.1 632323 632853 R PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_2109 OmpA/MotB; OmpA/MotB domain-containing protein complement(632323..632853) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402652 YP_003165804.1 CDS CAP2UW1_0524 NC_013194.1 633110 633997 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2968 RarD protein; RarD protein, DMT superfamily transporter 633110..633997 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402653 YP_003165805.1 CDS CAP2UW1_0525 NC_013194.1 634039 638751 D KEGG: rrs:RoseRS_3253 hypothetical protein; hypothetical protein 634039..638751 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402654 YP_003165806.1 CDS CAP2UW1_0526 NC_013194.1 639018 639266 D KEGG: mar:MAE_11940 hypothetical protein; hypothetical protein 639018..639266 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402655 YP_003165807.1 CDS CAP2UW1_0527 NC_013194.1 639402 640187 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein complement(639402..640187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402656 YP_003165808.1 CDS CAP2UW1_0528 NC_013194.1 640184 641272 R PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase; integrase catalytic subunit complement(640184..641272) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402657 YP_003165809.1 CDS CAP2UW1_0530 NC_013194.1 642270 643985 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: shw:Sputw3181_2399 RNA-directed DNA polymerase (reverse transcriptase); Ribonuclease H complement(642270..643985) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402659 YP_003165810.1 CDS CAP2UW1_0531 NC_013194.1 644255 645550 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: maq:Maqu_4119 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(644255..645550) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402660 YP_003165811.1 CDS CAP2UW1_0532 NC_013194.1 645740 646480 D PFAM: integrase family protein; KEGG: eba:ebA1360 hypothetical protein; integrase family protein 645740..646480 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402661 YP_003165812.1 CDS CAP2UW1_0533 NC_013194.1 646477 646707 D KEGG: mar:MAE_35950 hypothetical protein; hypothetical protein 646477..646707 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402662 YP_003165813.1 CDS CAP2UW1_0534 NC_013194.1 646704 646964 D KEGG: mar:MAE_20750 hypothetical protein; hypothetical protein 646704..646964 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402663 YP_003165814.1 CDS CAP2UW1_0535 NC_013194.1 646988 647428 D PFAM: protein of unknown function DUF29; KEGG: mca:MCA0580 hypothetical protein; hypothetical protein 646988..647428 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402664 YP_003165815.1 CDS CAP2UW1_0537 NC_013194.1 648496 649950 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: dar:Daro_0180 ribonuclease G; Rne/Rng family ribonuclease complement(648496..649950) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402667 YP_003165816.1 CDS CAP2UW1_0538 NC_013194.1 650047 651360 D PFAM: peptidase U32; KEGG: eba:ebA2789 peptidase family U32 protein; peptidase U32 650047..651360 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402668 YP_003165817.1 CDS CAP2UW1_0539 NC_013194.1 651376 652467 D KEGG: dar:Daro_0175 hypothetical protein; hypothetical protein 651376..652467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402669 YP_003165818.1 CDS CAP2UW1_0540 NC_013194.1 652464 653096 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(652464..653096) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402670 YP_003165819.1 CDS CAP2UW1_0541 NC_013194.1 653156 654274 R PFAM: protein of unknown function UPF0118; KEGG: ppd:Ppro_0405 protein of unknown function UPF0118; hypothetical protein complement(653156..654274) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402671 YP_003165820.1 CDS CAP2UW1_0542 NC_013194.1 654626 656125 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 654626..656125 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402672 YP_003165821.1 CDS CAP2UW1_0543 NC_013194.1 656130 657785 D KEGG: dar:Daro_3715 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein 656130..657785 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402673 YP_003165822.1 CDS CAP2UW1_0544 NC_013194.1 658133 658384 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0872 hypothetical protein; prevent-host-death family protein 658133..658384 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402674 YP_003165823.1 CDS CAP2UW1_0545 NC_013194.1 658381 658794 D PFAM: PilT protein domain protein; KEGG: rso:RSc0871 putative plasmid stability-like protein; PilT protein domain-containing protein 658381..658794 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402675 YP_003165824.1 CDS CAP2UW1_0546 NC_013194.1 658896 659786 R PFAM: alpha/beta hydrolase fold; KEGG: eba:ebA3472 putative hydrolase; alpha/beta hydrolase fold protein complement(658896..659786) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402676 YP_003165825.1 CDS CAP2UW1_0547 NC_013194.1 659821 660447 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_1055 S-adenosylmethionine-dependent methyltransferase; type 12 methyltransferase complement(659821..660447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402677 YP_003165826.1 CDS CAP2UW1_0548 NC_013194.1 660686 662338 R PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase; transposase IS4 family protein complement(660686..662338) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402678 YP_003165827.1 CDS CAP2UW1_0549 NC_013194.1 662541 663245 D PFAM: regulatory protein TetR; KEGG: dar:Daro_3923 transcriptional regulator, TetR family; TetR family transcriptional regulator 662541..663245 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402679 YP_003165828.1 CDS CAP2UW1_0550 NC_013194.1 663242 664345 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: azo:azo0846 membrane fusion protein; RND family efflux transporter MFP subunit 663242..664345 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402680 YP_003165829.1 CDS CAP2UW1_0551 NC_013194.1 664342 667425 D PFAM: acriflavin resistance protein; KEGG: cvi:CV_3924 probable transmembrane drug efflux protein; acriflavin resistance protein 664342..667425 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402681 YP_003165830.1 CDS CAP2UW1_0552 NC_013194.1 667552 667977 R PFAM: UspA domain protein; KEGG: eba:ebA3574 universal stress protein (Usp); UspA domain-containing protein complement(667552..667977) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402682 YP_003165831.1 CDS CAP2UW1_0553 NC_013194.1 668008 669423 R KEGG: nwi:Nwi_0939 hypothetical protein; hypothetical protein complement(668008..669423) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402683 YP_003165832.1 CDS CAP2UW1_0554 NC_013194.1 669836 670423 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bpt:Bpet2844 hypothetical protein; Tripartite ATP-independent periplasmic transporter DctQ component 669836..670423 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402684 YP_003165833.1 CDS CAP2UW1_0555 NC_013194.1 670423 671922 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dar:Daro_0600 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 670423..671922 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402685 YP_003165834.1 CDS CAP2UW1_0556 NC_013194.1 672071 673150 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mag:amb2584 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; TRAP dicarboxylate transporter subunit DctP complement(672071..673150) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402686 YP_003165835.1 CDS CAP2UW1_0557 NC_013194.1 673255 674634 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: azo:azo2794 probable PmbA protein; peptidase U62 modulator of DNA gyrase complement(673255..674634) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402687 YP_003165836.1 CDS CAP2UW1_0558 NC_013194.1 674752 675291 D PFAM: protein of unknown function DUF615; KEGG: eba:ebA1030 hypothetical protein; hypothetical protein 674752..675291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402688 YP_003165837.1 CDS CAP2UW1_0559 NC_013194.1 675278 675877 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: azo:azo2792 molybdenum cofactor biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 675278..675877 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402689 YP_003165838.1 CDS CAP2UW1_0560 NC_013194.1 675890 677422 R KEGG: dar:Daro_0594 hypothetical protein; hypothetical protein complement(675890..677422) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402690 YP_003165839.1 CDS CAP2UW1_0561 NC_013194.1 677593 678414 D PFAM: thymidylate synthase; KEGG: dar:Daro_0593 thymidylate synthase; Thymidylate synthase 677593..678414 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402691 YP_003165840.1 CDS CAP2UW1_0562 NC_013194.1 678463 678972 D PFAM: dihydrofolate reductase region; KEGG: dar:Daro_0579 dihydrofolate reductase; dihydrofolate reductase 678463..678972 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402692 YP_003165841.1 CDS CAP2UW1_0563 NC_013194.1 679068 679502 D KEGG: dar:Daro_3490 hypothetical protein; hypothetical protein 679068..679502 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402693 YP_003165842.1 CDS CAP2UW1_0564 NC_013194.1 679489 679677 R KEGG: dar:Daro_3491 hypothetical protein; hypothetical protein complement(679489..679677) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402694 YP_003165843.1 CDS lpxC NC_013194.1 679682 680611 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(679682..680611) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402695 YP_003165844.1 CDS CAP2UW1_0566 NC_013194.1 680707 681882 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(680707..681882) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402696 YP_003165845.1 CDS CAP2UW1_0567 NC_013194.1 681951 683180 R PFAM: cell division protein FtsA; KEGG: dar:Daro_3494 cell division protein FtsA; cell division protein FtsA complement(681951..683180) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402697 YP_003165846.1 CDS CAP2UW1_0568 NC_013194.1 683177 683929 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: dar:Daro_3495 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein FtsQ-type complement(683177..683929) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402698 YP_003165847.1 CDS ddl NC_013194.1 683933 684859 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(683933..684859) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402699 YP_003165848.1 CDS CAP2UW1_0570 NC_013194.1 684869 686257 R TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3497 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate/alanine ligase complement(684869..686257) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402700 YP_003165849.1 CDS murG NC_013194.1 686254 687312 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(686254..687312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402701 YP_003165850.1 CDS CAP2UW1_0572 NC_013194.1 687365 688525 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: dar:Daro_3499 cell cycle protein; cell division protein FtsW complement(687365..688525) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402702 YP_003165851.1 CDS CAP2UW1_0573 NC_013194.1 688525 689892 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3500 UDP-N-acetylmuramoylalanine--D-glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase complement(688525..689892) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402703 YP_003165852.1 CDS mraY NC_013194.1 689894 690982 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(689894..690982) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402704 YP_003165853.1 CDS CAP2UW1_0575 NC_013194.1 690982 692352 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3502 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase complement(690982..692352) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402705 YP_003165854.1 CDS CAP2UW1_0576 NC_013194.1 692361 693869 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3503 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl-tripeptide synthetase complement(692361..693869) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402706 YP_003165855.1 CDS CAP2UW1_0577 NC_013194.1 693866 695617 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: dar:Daro_3504 peptidoglycan synthetase FtsI; peptidoglycan glycosyltransferase complement(693866..695617) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402707 YP_003165856.1 CDS CAP2UW1_0578 NC_013194.1 695614 695892 R PFAM: cell division protein FtsL; KEGG: dar:Daro_3505 cell division protein, FtsL -like; cell division protein FtsL complement(695614..695892) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402708 YP_003165857.1 CDS mraW NC_013194.1 695894 696844 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: dar:Daro_3506 methyltransferase; S-adenosyl-methyltransferase MraW complement(695894..696844) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402709 YP_003165858.1 CDS CAP2UW1_0580 NC_013194.1 696841 697287 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(696841..697287) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402710 YP_003165859.1 CDS CAP2UW1_0581 NC_013194.1 698022 698816 R KEGG: dar:Daro_0508 probable putative transmembrane protein; hypothetical protein complement(698022..698816) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402712 YP_003165860.1 CDS CAP2UW1_0582 NC_013194.1 698813 699271 R KEGG: dar:Daro_0507 hypothetical protein; hypothetical protein complement(698813..699271) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402713 YP_003165861.1 CDS CAP2UW1_0583 NC_013194.1 699307 700341 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(699307..700341) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402714 YP_003165862.1 CDS CAP2UW1_0584 NC_013194.1 700504 701346 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_0504 hypothetical protein; uroporphyrin-III C/tetrapyrrole methyltransferase complement(700504..701346) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402715 YP_003165863.1 CDS CAP2UW1_0585 NC_013194.1 701372 701773 D PFAM: protein of unknown function UPF0102; KEGG: dar:Daro_0503 hypothetical protein; hypothetical protein 701372..701773 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402716 YP_003165864.1 CDS CAP2UW1_0586 NC_013194.1 701760 702137 D PFAM: HIRAN; KEGG: dar:Daro_0502 hypothetical protein; hypothetical protein 701760..702137 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402717 YP_003165865.1 CDS CAP2UW1_0587 NC_013194.1 702178 702771 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 702178..702771 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402718 YP_003165866.1 CDS CAP2UW1_0588 NC_013194.1 702768 703421 D PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: eba:ebA1464 hypothetical protein; transport-associated protein 702768..703421 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402719 YP_003165867.1 CDS CAP2UW1_0589 NC_013194.1 703563 703919 R PFAM: dihydroneopterin aldolase; KEGG: dar:Daro_0534 dihydroneopterin aldolase; dihydroneopterin aldolase complement(703563..703919) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402720 YP_003165868.1 CDS CAP2UW1_0590 NC_013194.1 704029 704646 D PFAM: protein of unknown function DUF205; KEGG: dar:Daro_0533 acyl-phosphate glycerol-3-phosphate acyltransferase; hypothetical protein 704029..704646 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402721 YP_003165869.1 CDS CAP2UW1_0591 NC_013194.1 704660 705166 R PFAM: glycoside hydrolase family 24; KEGG: stm:STM1028 lysozyme; glycoside hydrolase family 24 complement(704660..705166) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402722 YP_003165870.1 CDS CAP2UW1_0592 NC_013194.1 705451 706470 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(705451..706470) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402723 YP_003165871.1 CDS CAP2UW1_0593 NC_013194.1 706506 707153 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_4089 hypothetical protein; Crp/Fnr family transcriptional regulator complement(706506..707153) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402724 YP_003165872.1 CDS CAP2UW1_0594 NC_013194.1 707227 709518 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rfr:Rfer_0619 TonB-dependent receptor; TonB-dependent receptor complement(707227..709518) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402725 YP_003165873.1 CDS CAP2UW1_0596 NC_013194.1 710690 712768 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_A3000 molybdopterin oxidoreductase; molybdopterin oxidoreductase 710690..712768 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402727 YP_003165874.1 CDS CAP2UW1_0597 NC_013194.1 712833 713690 R KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein complement(712833..713690) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402728 YP_003165875.1 CDS CAP2UW1_0599 NC_013194.1 715593 716294 R TIGRFAM: hemerythrin-like metal-binding protein; KEGG: asa:ASA_2981 GGDEF domain protein; hemerythrin-like metal-binding protein complement(715593..716294) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402730 YP_003165876.1 CDS CAP2UW1_0600 NC_013194.1 716502 717227 R PFAM: LrgB family protein; KEGG: azo:azo1154 hypothetical protein; LrgB family protein complement(716502..717227) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402731 YP_003165877.1 CDS CAP2UW1_0601 NC_013194.1 717224 717583 R PFAM: LrgA family protein; KEGG: azo:azo1155 hypothetical protein; LrgA family protein complement(717224..717583) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402732 YP_003165878.1 CDS CAP2UW1_0602 NC_013194.1 717745 718248 R PFAM: Inorganic pyrophosphatase; KEGG: eba:ebA594 inorganic pyrophosphatase; Inorganic pyrophosphatase complement(717745..718248) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402733 YP_003165879.1 CDS CAP2UW1_0603 NC_013194.1 718434 718907 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: har:HEAR1492 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 718434..718907 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402734 YP_003165880.1 CDS CAP2UW1_0604 NC_013194.1 718915 719049 D hypothetical protein 718915..719049 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402735 YP_003165881.1 CDS CAP2UW1_0605 NC_013194.1 719102 719434 D PFAM: Thioredoxin domain; KEGG: reu:Reut_B4067 probable thioredoxin; Thioredoxin domain-containing protein 719102..719434 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402736 YP_003165882.1 CDS CAP2UW1_0606 NC_013194.1 719451 720617 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_2957 secretion protein HlyD; RND family efflux transporter MFP subunit 719451..720617 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402737 YP_003165883.1 CDS CAP2UW1_0607 NC_013194.1 720627 723719 D PFAM: acriflavin resistance protein; KEGG: dar:Daro_2958 acriflavin resistance protein; acriflavin resistance protein 720627..723719 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402738 YP_003165884.1 CDS CAP2UW1_0608 NC_013194.1 723959 725374 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3021 protein of unknown function DUF404, bacteria N-terminal:protein of unknown function DUF407; hypothetical protein 723959..725374 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402739 YP_003165885.1 CDS CAP2UW1_0609 NC_013194.1 725393 726325 D PFAM: protein of unknown function DUF403; KEGG: dar:Daro_3020 protein of unknown function DUF403, bacteria; hypothetical protein 725393..726325 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402740 YP_003165886.1 CDS CAP2UW1_0610 NC_013194.1 726422 727138 D KEGG: azo:azo2560 hypothetical protein; hypothetical protein 726422..727138 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402741 YP_003165887.1 CDS CAP2UW1_0611 NC_013194.1 727688 728008 D KEGG: dar:Daro_3034 hypothetical protein; hypothetical protein 727688..728008 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402743 YP_003165888.1 CDS CAP2UW1_0612 NC_013194.1 728100 729365 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(728100..729365) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402744 YP_003165889.1 CDS CAP2UW1_0613 NC_013194.1 729358 729603 R PFAM: BolA family protein; KEGG: dar:Daro_3394 BolA-like protein; BolA family protein complement(729358..729603) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402745 YP_003165890.1 CDS CAP2UW1_0614 NC_013194.1 729607 730359 R PFAM: ABC-2 type transporter; KEGG: dar:Daro_3395 ABC-2; ABC transporter complement(729607..730359) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402746 YP_003165891.1 CDS CAP2UW1_0615 NC_013194.1 730359 731279 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1306 ATP-binding ABC transporter protein; ABC transporter complement(730359..731279) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402747 YP_003165892.1 CDS CAP2UW1_0616 NC_013194.1 731314 731613 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dar:Daro_3397 NTP binding protein (contains STAS domain); anti-sigma-factor antagonist complement(731314..731613) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402748 YP_003165893.1 CDS CAP2UW1_0617 NC_013194.1 731610 732347 R PFAM: toluene tolerance family protein; KEGG: dar:Daro_3398 toluene tolerance; toluene tolerance family protein complement(731610..732347) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402749 YP_003165894.1 CDS CAP2UW1_0618 NC_013194.1 732313 733023 R PFAM: VacJ family lipoprotein; KEGG: dar:Daro_3399 VacJ-like lipoprotein; VacJ family lipoprotein complement(732313..733023) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402750 YP_003165895.1 CDS CAP2UW1_0619 NC_013194.1 733039 733512 R PFAM: Mammalian cell entry related domain protein; KEGG: dar:Daro_3400 mammalian cell entry related; Mammalian cell entry related domain-containing protein complement(733039..733512) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402751 YP_003165896.1 CDS CAP2UW1_0620 NC_013194.1 733509 734324 R PFAM: protein of unknown function DUF140; KEGG: eba:ebA1312 predicted ABC-type transport system involved in resistance to organic solvents, permease component; hypothetical protein complement(733509..734324) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402752 YP_003165897.1 CDS CAP2UW1_0621 NC_013194.1 734321 735133 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA1313 putative ATP-binding ABC transporter protein; ABC transporter complement(734321..735133) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402753 YP_003165898.1 CDS CAP2UW1_0622 NC_013194.1 735267 736724 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3403 helix-turn-helix, fis-type; two component sigma-54 specific Fis family transcriptional regulator 735267..736724 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402754 YP_003165899.1 CDS CAP2UW1_0623 NC_013194.1 736737 738176 D PFAM: Sporulation domain protein; KEGG: dar:Daro_3404 ATPas; Sporulation domain-containing protein 736737..738176 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402755 YP_003165900.1 CDS CAP2UW1_0624 NC_013194.1 738248 740122 D PFAM: type II and III secretion system protein; KEGG: dar:Daro_3405 type II and III secretion system protein; type II and III secretion system protein 738248..740122 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402756 YP_003165901.1 CDS CAP2UW1_0625 NC_013194.1 740131 741369 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_3406 TPR repeat; hypothetical protein 740131..741369 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402757 YP_003165902.1 CDS CAP2UW1_0626 NC_013194.1 741418 743133 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_3407 type II secretion system protein E:general secretory system II, protein E, N-terminal; type II secretion system protein E 741418..743133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402758 YP_003165903.1 CDS CAP2UW1_0627 NC_013194.1 743139 744341 D PFAM: type II secretion system protein; KEGG: dar:Daro_3408 type II secretion system protein; type II secretion system protein 743139..744341 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402759 YP_003165904.1 CDS CAP2UW1_0628 NC_013194.1 744346 745887 D KEGG: dar:Daro_3409 hypothetical protein; hypothetical protein 744346..745887 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402760 YP_003165905.1 CDS CAP2UW1_0629 NC_013194.1 745884 746486 D KEGG: dar:Daro_3410 hypothetical protein; hypothetical protein 745884..746486 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402761 YP_003165906.1 CDS CAP2UW1_0630 NC_013194.1 746520 746981 D KEGG: dar:Daro_3411 hypothetical protein; hypothetical protein 746520..746981 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402762 YP_003165907.1 CDS CAP2UW1_0631 NC_013194.1 747046 748287 D KEGG: azo:azo0798 hypothetical secreted protein; hypothetical protein 747046..748287 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402763 YP_003165908.1 CDS CAP2UW1_0632 NC_013194.1 748284 749027 D KEGG: tbd:Tbd_0542 hypothetical protein; hypothetical protein 748284..749027 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402764 YP_003165909.1 CDS CAP2UW1_0633 NC_013194.1 749028 750314 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dar:Daro_3414 adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase 749028..750314 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402765 YP_003165910.1 CDS CAP2UW1_0634 NC_013194.1 750311 752029 R SMART: ATP-binding region ATPase domain protein; KEGG: dar:Daro_3415 ATP-binding region, ATPase-like; ATPase domain-containing protein complement(750311..752029) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402766 YP_003165911.1 CDS CAP2UW1_0635 NC_013194.1 752200 752934 D KEGG: tbd:Tbd_0540 hypothetical protein; hypothetical protein 752200..752934 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402767 YP_003165912.1 CDS CAP2UW1_0636 NC_013194.1 752998 754965 R PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: dar:Daro_3417 potassium efflux system protein; sodium/hydrogen exchanger complement(752998..754965) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402768 YP_003165913.1 CDS CAP2UW1_0637 NC_013194.1 755060 756043 D KEGG: dar:Daro_3418 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 755060..756043 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402769 YP_003165914.1 CDS CAP2UW1_0638 NC_013194.1 756043 756591 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: eba:ebA1316 conserved hypothetical protein, predicted phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 756043..756591 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402770 YP_003165915.1 CDS CAP2UW1_0639 NC_013194.1 756588 757175 D PFAM: protein of unknown function DUF1239; KEGG: dar:Daro_3420 protein of unknown function DUF1239; hypothetical protein 756588..757175 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402771 YP_003165916.1 CDS CAP2UW1_0640 NC_013194.1 757178 757801 D TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: dar:Daro_3421 OstA-like protein; lipopolysaccharide transport periplasmic protein LptA 757178..757801 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402772 YP_003165917.1 CDS CAP2UW1_0641 NC_013194.1 757782 758003 R hypothetical protein complement(757782..758003) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402773 YP_003165918.1 CDS CAP2UW1_0642 NC_013194.1 758200 758751 D TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: dar:Daro_3422 phasin; phasin family protein 758200..758751 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402774 YP_003165919.1 CDS CAP2UW1_0643 NC_013194.1 758980 759528 D TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: dar:Daro_3423 phasin; phasin family protein 758980..759528 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402775 YP_003165920.1 CDS CAP2UW1_0644 NC_013194.1 759635 760390 R PFAM: molybdopterin binding domain; KEGG: dar:Daro_3424 molybdopterin binding domain; molybdopterin-binding domain-containing protein complement(759635..760390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402776 YP_003165921.1 CDS CAP2UW1_0645 NC_013194.1 760387 761139 R KEGG: dar:Daro_3425 hypothetical protein; hypothetical protein complement(760387..761139) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402777 YP_003165922.1 CDS CAP2UW1_0646 NC_013194.1 761166 765017 R KEGG: dar:Daro_3426 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(761166..765017) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402778 YP_003165923.1 CDS CAP2UW1_0648 NC_013194.1 766354 766650 R hypothetical protein complement(766354..766650) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402780 YP_003165924.1 CDS CAP2UW1_0649 NC_013194.1 766754 767683 D KEGG: ecm:EcSMS35_4789 hypothetical protein; hypothetical protein 766754..767683 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402781 YP_003165925.1 CDS CAP2UW1_0650 NC_013194.1 769008 769769 D KEGG: msi:Msm_0137 putative flagellar protein D/E; hypothetical protein 769008..769769 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402782 YP_003165926.1 CDS CAP2UW1_0651 NC_013194.1 770729 771940 D KEGG: sfu:Sfum_0807 conserved repeat domain; hypothetical protein 770729..771940 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402783 YP_003165927.1 CDS CAP2UW1_0652 NC_013194.1 772363 772944 D KEGG: ptr:461413 centromere protein E, 312kDa; hypothetical protein 772363..772944 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402784 YP_003165928.1 CDS CAP2UW1_0653 NC_013194.1 773034 773444 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mlo:mlr0112 hypothetical protein; glutathione-dependent formaldehyde-activating protein 773034..773444 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402785 YP_003165929.1 CDS CAP2UW1_0654 NC_013194.1 774114 775037 R PFAM: putative transposase; KEGG: sdn:Sden_1136 transposase; putative transposase complement(774114..775037) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402786 YP_003165930.1 CDS CAP2UW1_0655 NC_013194.1 775386 775937 D KEGG: azo:azo3334 hypothetical protein; hypothetical protein 775386..775937 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402787 YP_003165931.1 CDS sucC NC_013194.1 775995 777155 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 775995..777155 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402788 YP_003165932.1 CDS CAP2UW1_0657 NC_013194.1 777165 778058 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 777165..778058 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402789 YP_003165933.1 CDS CAP2UW1_0658 NC_013194.1 778243 779202 D PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: dar:Daro_3361 ornithine cyclodeaminase; Ornithine cyclodeaminase 778243..779202 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402790 YP_003165934.1 CDS CAP2UW1_0659 NC_013194.1 779303 780133 D PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3360 protein phosphatase 2C-like; protein serine/threonine phosphatase 779303..780133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402791 YP_003165935.1 CDS CAP2UW1_0660 NC_013194.1 780147 780827 D PFAM: Forkhead-associated protein; KEGG: dar:Daro_3359 forkhead-associated; FHA domain-containing protein 780147..780827 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402792 YP_003165936.1 CDS CAP2UW1_0661 NC_013194.1 780922 781689 D PFAM: beta-lactamase domain protein; KEGG: dar:Daro_3358 beta-lactamase-like; beta-lactamase domain-containing protein 780922..781689 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402793 YP_003165937.1 CDS CAP2UW1_0662 NC_013194.1 781704 784073 D PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: azo:azo3328 general secretion pathway protein E; putative phytochrome sensor protein 781704..784073 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402794 YP_003165938.1 CDS CAP2UW1_0663 NC_013194.1 784133 785362 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: azo:azo1147 isocitrate dehydrogenase [NADP]; isocitrate/isopropylmalate dehydrogenase complement(784133..785362) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402795 YP_003165939.1 CDS aceK NC_013194.1 785721 787493 D catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 785721..787493 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402796 YP_003165940.1 CDS CAP2UW1_0665 NC_013194.1 787490 788416 D PFAM: SdiA-regulated domain protein; KEGG: pap:PSPA7_0412 putative transcriptional regulator; SdiA-regulated domain-containing protein 787490..788416 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402797 YP_003165941.1 CDS CAP2UW1_0666 NC_013194.1 788462 789268 R KEGG: dar:Daro_3317 xylose isomerase-like TIM barrel; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(788462..789268) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402798 YP_003165942.1 CDS CAP2UW1_0667 NC_013194.1 789318 789878 D TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: dar:Daro_3318 ATP:cob(I)alamin adenosyltransferase; ATP/cobalamin adenosyltransferase 789318..789878 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402799 YP_003165943.1 CDS CAP2UW1_0668 NC_013194.1 789921 790478 D hypothetical protein 789921..790478 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402800 YP_003165944.1 CDS CAP2UW1_0669 NC_013194.1 791031 792980 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 791031..792980 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402801 YP_003165945.1 CDS CAP2UW1_0670 NC_013194.1 792983 795328 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 792983..795328 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402802 YP_003165946.1 CDS CAP2UW1_0671 NC_013194.1 795434 795895 D PFAM: CreA family protein; KEGG: dar:Daro_1905 CreA; CreA family protein 795434..795895 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402803 YP_003165947.1 CDS CAP2UW1_0672 NC_013194.1 795898 797160 D KEGG: eba:ebA2549 N6 adenine-specific DNA methyltransferase, N12 class; N6 adenine-specific DNA methyltransferase, N12 class 795898..797160 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402804 YP_003165948.1 CDS CAP2UW1_0673 NC_013194.1 797259 798569 D TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: dar:Daro_0011 glutamate--cysteine ligase GshA; glutamate/cysteine ligase 797259..798569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402805 YP_003165949.1 CDS CAP2UW1_0674 NC_013194.1 798560 799516 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 798560..799516 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402806 YP_003165950.1 CDS CAP2UW1_0675 NC_013194.1 799495 800535 D PFAM: ApbE family lipoprotein; KEGG: dar:Daro_0009 ApbE-like lipoprotein; ApbE family lipoprotein 799495..800535 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402807 YP_003165951.1 CDS CAP2UW1_0676 NC_013194.1 800606 800998 D PFAM: PTS system fructose subfamily IIA component; KEGG: dar:Daro_4082 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component 800606..800998 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402808 YP_003165952.1 CDS CAP2UW1_0677 NC_013194.1 801021 801290 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: azo:azo3781 putative phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 801021..801290 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402809 YP_003165953.1 CDS CAP2UW1_0678 NC_013194.1 801301 803043 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: dar:Daro_4084 phosphoenolpyruvate--protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 801301..803043 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402810 YP_003165954.1 CDS metX NC_013194.1 803043 804170 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 803043..804170 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402811 YP_003165955.1 CDS CAP2UW1_0680 NC_013194.1 804167 804787 D TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; KEGG: eba:ebA2809 methionine biosynthesis MetW, subunit of homoserine-O-acetyltransferase; methionine biosynthesis protein MetW 804167..804787 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402812 YP_003165956.1 CDS CAP2UW1_0681 NC_013194.1 804750 806309 D KEGG: azo:azo3975 putative AmpG protein; putative AmpG protein 804750..806309 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402813 YP_003165957.1 CDS CAP2UW1_0682 NC_013194.1 806293 807030 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: eba:ebA2814 single-strand selective monofunctional uracil DNA glycosylase; Uracil-DNA glycosylase superfamily protein 806293..807030 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402814 YP_003165958.1 CDS CAP2UW1_0683 NC_013194.1 807085 807405 R KEGG: dar:Daro_0126 hypothetical protein; hypothetical protein complement(807085..807405) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402815 YP_003165959.1 CDS CAP2UW1_0684 NC_013194.1 807386 807793 R KEGG: dar:Daro_0125 hypothetical protein; hypothetical protein complement(807386..807793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402816 YP_003165960.1 CDS CAP2UW1_0685 NC_013194.1 807809 808129 R PFAM: protein of unknown function DUF883 ElaB; KEGG: dar:Daro_0124 protein of unknown function DUF883, ElaB; hypothetical protein complement(807809..808129) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402817 YP_003165961.1 CDS CAP2UW1_0686 NC_013194.1 808269 809069 R KEGG: dar:Daro_0123 AP endonuclease, family 1:exodeoxyribonuclease III xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(808269..809069) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402818 YP_003165962.1 CDS pyrE NC_013194.1 809114 809764 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 809114..809764 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402819 YP_003165963.1 CDS CAP2UW1_0688 NC_013194.1 809742 810374 D KEGG: dar:Daro_0121 hypothetical protein; hypothetical protein 809742..810374 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402820 YP_003165964.1 CDS CAP2UW1_0689 NC_013194.1 810447 811898 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: dar:Daro_0120 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B complement(810447..811898) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402821 YP_003165965.1 CDS gatA NC_013194.1 812006 813478 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(812006..813478) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402822 YP_003165966.1 CDS CAP2UW1_0691 NC_013194.1 813475 813771 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: dar:Daro_0117 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C complement(813475..813771) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402823 YP_003165967.1 CDS CAP2UW1_0692 NC_013194.1 813875 814918 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 813875..814918 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402824 YP_003165968.1 CDS CAP2UW1_0693 NC_013194.1 814967 815899 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: dar:Daro_0115 rod shape-determining protein MreC; rod shape-determining protein MreC 814967..815899 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402825 YP_003165969.1 CDS CAP2UW1_0694 NC_013194.1 815905 816426 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: dar:Daro_0114 rod shape-determining protein MreD; rod shape-determining protein MreD 815905..816426 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402826 YP_003165970.1 CDS CAP2UW1_0695 NC_013194.1 816528 818423 D KEGG: dar:Daro_0113 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 816528..818423 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402827 YP_003165971.1 CDS CAP2UW1_0696 NC_013194.1 818427 819533 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dar:Daro_0112 rod shape-determining protein RodA; rod shape-determining protein RodA 818427..819533 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402828 YP_003165972.1 CDS CAP2UW1_0697 NC_013194.1 819530 820603 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: dar:Daro_0111 rare lipoprotein A; rare lipoprotein A 819530..820603 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402829 YP_003165973.1 CDS CAP2UW1_0698 NC_013194.1 820604 821062 R KEGG: dar:Daro_0298 PAS; TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein complement(820604..821062) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402830 YP_003165974.1 CDS CAP2UW1_0699 NC_013194.1 821155 822807 R PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase; transposase IS4 family protein complement(821155..822807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402831 YP_003165975.1 CDS CAP2UW1_0700 NC_013194.1 822831 823370 R PFAM: GAF domain protein; KEGG: dar:Daro_0298 PAS; putative GAF sensor protein complement(822831..823370) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402832 YP_003165976.1 CDS CAP2UW1_0701 NC_013194.1 823565 824701 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: dar:Daro_0291 Penicillin-binding protein 6. Serine peptidase. MEROPS family S11; Serine-type D-Ala-D-Ala carboxypeptidase 823565..824701 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402833 YP_003165977.1 CDS CAP2UW1_0702 NC_013194.1 824712 824981 D PFAM: protein of unknown function DUF493; KEGG: dar:Daro_0289 protein of unknown function DUF493; hypothetical protein 824712..824981 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402834 YP_003165978.1 CDS CAP2UW1_0703 NC_013194.1 824978 825679 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: dar:Daro_0288 lipoate-protein ligase B; lipoate-protein ligase B 824978..825679 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402835 YP_003165979.1 CDS CAP2UW1_0704 NC_013194.1 825679 826671 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 825679..826671 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402836 YP_003165980.1 CDS CAP2UW1_0705 NC_013194.1 826689 827207 R KEGG: ajs:Ajs_1504 hypothetical protein; hypothetical protein complement(826689..827207) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402837 YP_003165981.1 CDS CAP2UW1_0706 NC_013194.1 827379 828071 D KEGG: rfr:Rfer_2427 hypothetical protein; hypothetical protein 827379..828071 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402838 YP_003165982.1 CDS CAP2UW1_0707 NC_013194.1 828279 828740 D PFAM: Rare lipoprotein A; KEGG: dar:Daro_3173 rare lipoprotein A; Rare lipoprotein A 828279..828740 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402839 YP_003165983.1 CDS CAP2UW1_0708 NC_013194.1 829083 830240 D KEGG: reh:H16_A1906 2-methylcitrate synthase 1; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II 829083..830240 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402840 YP_003165984.1 CDS prpD NC_013194.1 830247 831710 D functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 830247..831710 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402841 YP_003165985.1 CDS CAP2UW1_0710 NC_013194.1 831771 831956 D KEGG: dar:Daro_2826 hypothetical protein; hypothetical protein 831771..831956 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402842 YP_003165986.1 CDS pssA NC_013194.1 832094 833452 D catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 832094..833452 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402843 YP_003165987.1 CDS CAP2UW1_0712 NC_013194.1 833400 833807 R PFAM: response regulator receiver; KEGG: pol:Bpro_4295 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(833400..833807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402844 YP_003165988.1 CDS CAP2UW1_0713 NC_013194.1 833785 834219 R response regulator receiver protein complement(833785..834219) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402845 YP_003165989.1 CDS CAP2UW1_0714 NC_013194.1 834495 835136 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sat:SYN_01953 response regulator with a HTH DNA-binding domain; two component LuxR family transcriptional regulator complement(834495..835136) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402846 YP_003165990.1 CDS CAP2UW1_0715 NC_013194.1 835143 837668 R KEGG: nmu:Nmul_A1709 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(835143..837668) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402847 YP_003165991.1 CDS CAP2UW1_0716 NC_013194.1 837776 838615 R KEGG: dar:Daro_2578 hypothetical protein; hypothetical protein complement(837776..838615) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402848 YP_003165992.1 CDS CAP2UW1_0717 NC_013194.1 838731 839312 R PFAM: NapC/NirT cytochrome c domain protein; KEGG: dar:Daro_2579 NapC/NirT cytochrome c, N-terminal; NapC/NirT cytochrome c domain-containing protein complement(838731..839312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402849 YP_003165993.1 CDS CAP2UW1_0718 NC_013194.1 840002 840355 R PFAM: protein of unknown function DUF86; KEGG: mmw:Mmwyl1_3032 protein of unknown function DUF86; hypothetical protein complement(840002..840355) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402850 YP_003165994.1 CDS CAP2UW1_0719 NC_013194.1 840348 840638 R PFAM: DNA polymerase beta domain protein region; KEGG: psa:PST_1417 nucleotidyltransferase family protein; DNA polymerase beta domain-containing protein complement(840348..840638) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402851 YP_003165995.1 CDS CAP2UW1_0720 NC_013194.1 840673 841890 R TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: dar:Daro_1405 TPR repeat; cytochrome c-type biogenesis protein CcmI complement(840673..841890) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402852 YP_003165996.1 CDS CAP2UW1_0721 NC_013194.1 841887 842372 R PFAM: cytochrome C biogenesis protein; KEGG: rfr:Rfer_0038 cytochrome c biogenesis protein; cytochrome c biogenesis protein complement(841887..842372) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402853 YP_003165997.1 CDS CAP2UW1_0722 NC_013194.1 842369 842953 R TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_3997 periplasmic protein thiol:disulfide oxidoreductase DsbE; periplasmic protein thiol/disulfide oxidoreductase DsbE complement(842369..842953) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402854 YP_003165998.1 CDS CAP2UW1_0723 NC_013194.1 842964 844958 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: dar:Daro_3996 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF complement(842964..844958) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402855 YP_003165999.1 CDS CAP2UW1_0724 NC_013194.1 844975 845454 R PFAM: CcmE/CycJ protein; KEGG: dar:Daro_3995 CcmE/CycJ protein; CcmE/CycJ protein complement(844975..845454) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402856 YP_003166000.1 CDS CAP2UW1_0725 NC_013194.1 845451 845675 R TIGRFAM: heme exporter protein CcmD; KEGG: dar:Daro_3994 heme exporter protein D; heme exporter protein CcmD complement(845451..845675) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402857 YP_003166001.1 CDS CAP2UW1_0726 NC_013194.1 845680 846429 R TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: pnu:Pnuc_1516 heme exporter protein CcmC; heme exporter protein CcmC complement(845680..846429) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402858 YP_003166002.1 CDS CAP2UW1_0727 NC_013194.1 846446 847114 R TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB complement(846446..847114) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402859 YP_003166003.1 CDS CAP2UW1_0728 NC_013194.1 847108 847764 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(847108..847764) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402860 YP_003166004.1 CDS CAP2UW1_0729 NC_013194.1 847902 848903 D KEGG: azo:azo3798 putative hydrogenase expression/formation protein HupK; putative hydrogenase expression/formation protein HupK 847902..848903 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402861 YP_003166005.1 CDS CAP2UW1_0730 NC_013194.1 848896 849237 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: rme:Rmet_1535 hydrogenase nickel insertion protein HypA; hydrogenase nickel insertion protein HypA 848896..849237 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402862 YP_003166006.1 CDS CAP2UW1_0731 NC_013194.1 849255 850334 D TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: dar:Daro_3978 hydrogenase accessory protein HypB; hydrogenase accessory protein HypB 849255..850334 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402863 YP_003166007.1 CDS CAP2UW1_0732 NC_013194.1 850336 852660 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: reh:PHG096 HypF2; (NiFe) hydrogenase maturation protein HypF 850336..852660 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402864 YP_003166008.1 CDS CAP2UW1_0733 NC_013194.1 852651 852893 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3967 hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 852651..852893 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402865 YP_003166009.1 CDS CAP2UW1_0734 NC_013194.1 853026 854180 D TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: dar:Daro_3966 hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 853026..854180 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402866 YP_003166010.1 CDS CAP2UW1_0735 NC_013194.1 854177 855226 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rfr:Rfer_4100 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 854177..855226 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402867 YP_003166011.1 CDS CAP2UW1_0736 NC_013194.1 855238 856956 D PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: rme:Rmet_1541 formyl transferase-like protein; formyl transferase domain-containing protein 855238..856956 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402868 YP_003166012.1 CDS CAP2UW1_0737 NC_013194.1 856953 858413 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 two component, sigma54 specific, transcriptional regulator, Fis family; two component sigma-54 specific Fis family transcriptional regulator 856953..858413 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402869 YP_003166013.1 CDS CAP2UW1_0738 NC_013194.1 858410 859408 D KEGG: azo:azo3807 ferredoxin hydrogenase, small subunit; ferredoxin hydrogenase small subunit 858410..859408 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402870 YP_003166014.1 CDS CAP2UW1_0739 NC_013194.1 859405 860865 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: azo:azo3808 probable ferredoxin hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 859405..860865 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402871 YP_003166015.1 CDS CAP2UW1_0740 NC_013194.1 860968 861210 D hypothetical protein 860968..861210 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402872 YP_003166016.1 CDS CAP2UW1_0741 NC_013194.1 861330 861470 D hypothetical protein 861330..861470 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402873 YP_003166017.1 CDS CAP2UW1_0742 NC_013194.1 861899 864892 R PFAM: Spermine synthase; KEGG: afw:Anae109_1032 spermine synthase; Spermine synthase complement(861899..864892) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402874 YP_003166018.1 CDS CAP2UW1_0744 NC_013194.1 866490 867977 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dar:Daro_0054 ammonium transporter; ammonium transporter complement(866490..867977) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402878 YP_003166019.1 CDS CAP2UW1_0745 NC_013194.1 867988 868326 R PFAM: nitrogen regulatory protein P-II; KEGG: dar:Daro_0053 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(867988..868326) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402879 YP_003166020.1 CDS CAP2UW1_0746 NC_013194.1 868382 869260 R PFAM: conserved hypothetical protein; KEGG: dar:Daro_1084 conserved hypothetical protein 2001; hypothetical protein complement(868382..869260) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402880 YP_003166021.1 CDS CAP2UW1_0747 NC_013194.1 869502 869747 D PFAM: protein of unknown function DUF526; KEGG: dar:Daro_0051 protein of unknown function DUF526; hypothetical protein 869502..869747 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402881 YP_003166022.1 CDS CAP2UW1_0748 NC_013194.1 869968 871467 D KEGG: dar:Daro_0050 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 869968..871467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402882 YP_003166023.1 CDS CAP2UW1_0749 NC_013194.1 871469 872752 D TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0049 drug resistance transporter Bcr/CflA subfamily; Bcr/CflA subfamily drug resistance transporter 871469..872752 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402883 YP_003166024.1 CDS CAP2UW1_0750 NC_013194.1 872670 873956 R PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_1524 major facilitator family transporter (permease); major facilitator superfamily protein complement(872670..873956) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402884 YP_003166025.1 CDS CAP2UW1_0751 NC_013194.1 874181 874669 D KEGG: eba:ebA3176 hypothetical protein; hypothetical protein 874181..874669 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402885 YP_003166026.1 CDS CAP2UW1_0752 NC_013194.1 874806 875216 D TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; KEGG: dar:Daro_0026 S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase proenzyme 874806..875216 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402886 YP_003166027.1 CDS CAP2UW1_0753 NC_013194.1 875275 876639 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 875275..876639 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402887 YP_003166028.1 CDS CAP2UW1_0754 NC_013194.1 876642 877340 D PFAM: Sporulation domain protein; KEGG: dar:Daro_3710 hypothetical protein; Sporulation domain-containing protein 876642..877340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402888 YP_003166029.1 CDS coaE NC_013194.1 877337 877960 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 877337..877960 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402889 YP_003166030.1 CDS CAP2UW1_0756 NC_013194.1 878021 878776 D PFAM: protein of unknown function DUF1342; KEGG: dar:Daro_3708 hypothetical protein; hypothetical protein 878021..878776 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402890 YP_003166031.1 CDS CAP2UW1_0757 NC_013194.1 878952 880160 D PFAM: major facilitator superfamily MFS_1; KEGG: azo:azo0073 putative MFS permease; major facilitator superfamily protein 878952..880160 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402891 YP_003166032.1 CDS CAP2UW1_0758 NC_013194.1 880173 880910 D PFAM: GCN5-related N-acetyltransferase; KEGG: scl:sce1378 acetyltransferases; GCN5-like N-acetyltransferase 880173..880910 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402892 YP_003166033.1 CDS CAP2UW1_0759 NC_013194.1 880872 881603 R PFAM: lipopolysaccharide kinase; KEGG: pst:PSPTO_4998 lipopolysaccharide biosynthesis protein, putative; lipopolysaccharide kinase complement(880872..881603) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402893 YP_003166034.1 CDS CAP2UW1_0760 NC_013194.1 881637 882335 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ppf:Pput_0942 methyltransferase type 11; type 11 methyltransferase complement(881637..882335) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402894 YP_003166035.1 CDS CAP2UW1_0761 NC_013194.1 882449 883567 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(882449..883567) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402895 YP_003166036.1 CDS CAP2UW1_0762 NC_013194.1 883570 884667 R TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: eba:ebA843 GTPase ObgE; GTP-binding protein Obg/CgtA complement(883570..884667) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402896 YP_003166037.1 CDS CAP2UW1_0763 NC_013194.1 884771 885037 R PFAM: ribosomal protein L27; KEGG: eba:ebC2 50S ribosomal protein L27; 50S ribosomal protein L27 complement(884771..885037) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402897 YP_003166038.1 CDS CAP2UW1_0764 NC_013194.1 885057 885392 R PFAM: ribosomal protein L21; KEGG: azo:azo3167 50S ribosomal protein L21; 50S ribosomal protein L21 complement(885057..885392) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402898 YP_003166039.1 CDS CAP2UW1_0765 NC_013194.1 885562 886524 D PFAM: Polyprenyl synthetase; KEGG: dar:Daro_0658 polyprenyl synthetase; polyprenyl synthetase 885562..886524 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402899 YP_003166040.1 CDS CAP2UW1_0766 NC_013194.1 886770 887003 D KEGG: pna:Pnap_3381 hypothetical protein; hypothetical protein 886770..887003 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402901 YP_003166041.1 CDS CAP2UW1_0767 NC_013194.1 887010 888602 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0661 signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 887010..888602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402902 YP_003166042.1 CDS CAP2UW1_0768 NC_013194.1 888593 889963 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0662 helix-turn-helix, fis-type; two component sigma-54 specific Fis family transcriptional regulator 888593..889963 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402903 YP_003166043.1 CDS CAP2UW1_0769 NC_013194.1 889960 890547 D PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: azo:azo3350 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetyl-anhydromuranmyl-L-alanine amidase 889960..890547 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402904 YP_003166044.1 CDS CAP2UW1_0770 NC_013194.1 890656 891816 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: dar:Daro_0664 hypothetical protein; hypothetical protein complement(890656..891816) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402905 YP_003166045.1 CDS CAP2UW1_0771 NC_013194.1 891922 893760 R catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(891922..893760) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402906 YP_003166046.1 CDS CAP2UW1_0772 NC_013194.1 894125 896425 D NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme 894125..896425 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402907 YP_003166047.1 CDS CAP2UW1_0773 NC_013194.1 896543 897676 D PFAM: Patatin; KEGG: dar:Daro_0853 patatin; Patatin 896543..897676 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402908 YP_003166048.1 CDS CAP2UW1_0774 NC_013194.1 897804 899057 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: dar:Daro_0667 Murein-dd-endopeptidase. Serine peptidase. MEROPS family S11; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 897804..899057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402909 YP_003166049.1 CDS CAP2UW1_0775 NC_013194.1 899336 900340 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_3693 thiosulphate-binding protein; sulfate ABC transporter periplasmic sulfate-binding protein 899336..900340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402910 YP_003166050.1 CDS CAP2UW1_0776 NC_013194.1 900419 901279 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_3692 sulphate transport system permease protein 2:sulfate ABC transporter, permease protein CysT; sulfate ABC transporter inner membrane subunit CysT 900419..901279 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402911 YP_003166051.1 CDS CAP2UW1_0777 NC_013194.1 901276 902151 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_3691 sulphate transport system permease protein 2:sulfate ABC transporter, permease protein CysW; sulfate ABC transporter inner membrane subunit CysW 901276..902151 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402912 YP_003166052.1 CDS CAP2UW1_0778 NC_013194.1 902237 903307 D KEGG: eba:ebA6208 ATP-binding protein of thiosulfate ABC transporter; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; sulfate ABC transporter ATPase subunit 902237..903307 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402913 YP_003166053.1 CDS CAP2UW1_0779 NC_013194.1 903409 903879 D KEGG: nmu:Nmul_A1955 hypothetical protein; hypothetical protein 903409..903879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402914 YP_003166054.1 CDS CAP2UW1_0780 NC_013194.1 903854 905065 D KEGG: nmu:Nmul_A1956 hypothetical protein; hypothetical protein 903854..905065 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402915 YP_003166055.1 CDS CAP2UW1_0781 NC_013194.1 905075 907948 D KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 905075..907948 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402916 YP_003166056.1 CDS hemA NC_013194.1 908051 909313 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 908051..909313 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402917 YP_003166057.1 CDS CAP2UW1_0783 NC_013194.1 909384 910466 D TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dar:Daro_3687 peptide chain release factor 1; peptide chain release factor 1 909384..910466 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402918 YP_003166058.1 CDS CAP2UW1_0784 NC_013194.1 910538 911362 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; KEGG: dar:Daro_3684 modification methylase HemK; protein-(glutamine-N5) methyltransferase, release factor-specific 910538..911362 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402919 YP_003166059.1 CDS CAP2UW1_0785 NC_013194.1 911436 911759 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: eba:ebA1175 predicted glutaredoxin-related protein; glutaredoxin-like protein 911436..911759 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402920 YP_003166060.1 CDS CAP2UW1_0786 NC_013194.1 911883 912245 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bra:BRADO3199 putative carboxymuconolactone decarboxylase; AhpD family alkylhydroperoxidase-like protein complement(911883..912245) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402921 YP_003166061.1 CDS CAP2UW1_0787 NC_013194.1 912373 912906 D KEGG: dar:Daro_4094 hypothetical protein; hypothetical protein 912373..912906 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402922 YP_003166062.1 CDS CAP2UW1_0788 NC_013194.1 912945 914231 R PFAM: cyclic nucleotide-binding; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo0988 putative serine/threonine protein kinase; cyclic nucleotide-binding protein complement(912945..914231) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402923 YP_003166063.1 CDS CAP2UW1_0789 NC_013194.1 914260 915645 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(914260..915645) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402924 YP_003166064.1 CDS CAP2UW1_0790 NC_013194.1 915822 916505 D PFAM: cytochrome c class I; KEGG: dar:Daro_1587 cytochrome c, class I; cytochrome c class I 915822..916505 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402925 YP_003166065.1 CDS hemC NC_013194.1 916830 917777 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 916830..917777 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402926 YP_003166066.1 CDS CAP2UW1_0792 NC_013194.1 917774 918550 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: dar:Daro_3673 uroporphyrinogen-III synthase; Uroporphyrinogen III synthase HEM4 917774..918550 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402927 YP_003166067.1 CDS CAP2UW1_0793 NC_013194.1 918750 918944 D hypothetical protein 918750..918944 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402928 YP_003166068.1 CDS CAP2UW1_0794 NC_013194.1 918941 919924 D PFAM: HemY domain protein; KEGG: dar:Daro_3671 HemY, N-terminal; HemY domain-containing protein 918941..919924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402929 YP_003166069.1 CDS CAP2UW1_0795 NC_013194.1 919891 920808 R PFAM: coproporphyrinogen III oxidase; KEGG: dar:Daro_3669 coproporphyrinogen III oxidase; Coproporphyrinogen oxidase complement(919891..920808) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402930 YP_003166070.1 CDS CAP2UW1_0796 NC_013194.1 920885 922165 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(920885..922165) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402931 YP_003166071.1 CDS CAP2UW1_0797 NC_013194.1 922267 923832 R KEGG: dar:Daro_3667 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(922267..923832) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402932 YP_003166072.1 CDS CAP2UW1_0798 NC_013194.1 923878 924123 R PFAM: helix-turn-helix Fis-type; KEGG: dar:Daro_3666 helix-turn-helix, fis-type; Fis family transcriptional regulator complement(923878..924123) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402933 YP_003166073.1 CDS CAP2UW1_0799 NC_013194.1 924120 925172 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: dar:Daro_3665 dihydrouridine synthase TIM-barrel protein nifR3; TIM-barrel protein, nifR3 family complement(924120..925172) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402934 YP_003166074.1 CDS CAP2UW1_0800 NC_013194.1 925307 925573 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: dar:Daro_0277 cell division topological specificity factor MinE; cell division topological specificity factor MinE complement(925307..925573) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402935 YP_003166075.1 CDS CAP2UW1_0801 NC_013194.1 925576 926397 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: eba:ebA6838 septum site-determining protein MinD; septum site-determining protein MinD complement(925576..926397) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402936 YP_003166076.1 CDS CAP2UW1_0802 NC_013194.1 926500 927282 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: tbd:Tbd_2302 septum site-determining protein MinC; septum site-determining protein MinC complement(926500..927282) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402937 YP_003166077.1 CDS CAP2UW1_0803 NC_013194.1 927398 928552 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: dar:Daro_3663 2-octaprenyl-6-methoxyphenol hydroxylase; ubiquinone biosynthesis hydroxylase complement(927398..928552) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402938 YP_003166078.1 CDS CAP2UW1_0804 NC_013194.1 928545 929852 R PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: dar:Daro_3662 Aminopeptidase P. Metallo peptidase. MEROPS family M24B; peptidase M24 complement(928545..929852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402939 YP_003166079.1 CDS CAP2UW1_0805 NC_013194.1 929849 930544 R PFAM: Nucleotidyl transferase; KEGG: dar:Daro_3661 nucleotidyl transferase; Nucleotidyl transferase complement(929849..930544) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402940 YP_003166080.1 CDS CAP2UW1_0806 NC_013194.1 930544 931587 R PFAM: aminoglycoside phosphotransferase; KEGG: eba:ebA1142 predicted phosphotransferase related to Ser/Thr protein kinase; aminoglycoside phosphotransferase complement(930544..931587) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402941 YP_003166081.1 CDS CAP2UW1_0807 NC_013194.1 931701 934694 D PFAM: Organic solvent tolerance protein; KEGG: dar:Daro_3659 organic solvent tolerance protein; Organic solvent tolerance protein 931701..934694 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402942 YP_003166082.1 CDS CAP2UW1_0808 NC_013194.1 934702 936012 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: dar:Daro_3658 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain-containing protein 934702..936012 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402943 YP_003166083.1 CDS CAP2UW1_0809 NC_013194.1 936009 937022 D KEGG: dar:Daro_3657 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 936009..937022 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402944 YP_003166084.1 CDS CAP2UW1_0810 NC_013194.1 937031 937813 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dar:Daro_3656 dimethyladenosine transferase; dimethyladenosine transferase 937031..937813 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402945 YP_003166085.1 CDS CAP2UW1_0811 NC_013194.1 937862 938059 R KEGG: ajs:Ajs_3417 hypothetical protein; hypothetical protein complement(937862..938059) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402946 YP_003166086.1 CDS CAP2UW1_0812 NC_013194.1 938158 938835 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_3649 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/Fnr family transcriptional regulator complement(938158..938835) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402947 YP_003166087.1 CDS CAP2UW1_0813 NC_013194.1 938835 939602 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: dar:Daro_3648 exodeoxyribonuclease III; exodeoxyribonuclease III Xth complement(938835..939602) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402948 YP_003166088.1 CDS CAP2UW1_0814 NC_013194.1 939661 940155 R KEGG: ret:RHE_PB00004 hypothetical protein; hypothetical protein complement(939661..940155) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402949 YP_003166089.1 CDS CAP2UW1_0815 NC_013194.1 940152 940676 R PFAM: glutaredoxin; KEGG: dar:Daro_3647 hypothetical protein; glutaredoxin complement(940152..940676) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402950 YP_003166090.1 CDS CAP2UW1_0816 NC_013194.1 940695 942788 R PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: dar:Daro_3646 Oligopeptidase A. Metallo peptidase. MEROPS family M03A; Oligopeptidase A complement(940695..942788) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402951 YP_003166091.1 CDS CAP2UW1_0817 NC_013194.1 942848 943621 R KEGG: dar:Daro_3645 integral membrane protein; integral membrane protein complement(942848..943621) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402952 YP_003166092.1 CDS CAP2UW1_0818 NC_013194.1 943686 944624 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(943686..944624) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402953 YP_003166093.1 CDS CAP2UW1_0819 NC_013194.1 944702 946018 R KEGG: dar:Daro_3639 hypothetical protein; hypothetical protein complement(944702..946018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402954 YP_003166094.1 CDS CAP2UW1_0820 NC_013194.1 946083 947147 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(946083..947147) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402955 YP_003166095.1 CDS CAP2UW1_0821 NC_013194.1 947274 948713 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(947274..948713) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402956 YP_003166096.1 CDS CAP2UW1_0822 NC_013194.1 949183 950181 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: lch:Lcho_0221 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase complement(949183..950181) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402957 YP_003166097.1 CDS CAP2UW1_0823 NC_013194.1 950202 952190 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dar:Daro_3591 transketolase; transketolase complement(950202..952190) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402958 YP_003166098.1 CDS CAP2UW1_0825 NC_013194.1 952868 954247 D catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 952868..954247 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402960 YP_003166099.1 CDS CAP2UW1_0826 NC_013194.1 954344 955150 D PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: tbd:Tbd_2637 rubisco activation protein CbbQ; CbbQ/NirQ/NorQ domain-containing protein 954344..955150 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402961 YP_003166100.1 CDS CAP2UW1_0827 NC_013194.1 955168 957477 D PFAM: von Willebrand factor type A; KEGG: tbd:Tbd_2636 rubisco activation protein CbbO; von Willebrand factor type A 955168..957477 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402962 YP_003166101.1 CDS CAP2UW1_0828 NC_013194.1 957900 958862 D TIGRFAM: peptidyl-prolyl cis-trans isomerase, EpsD family; KEGG: tbd:Tbd_1798 hypothetical protein; EpsD family peptidyl-prolyl cis-trans isomerase 957900..958862 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402963 YP_003166102.1 CDS CAP2UW1_0829 NC_013194.1 958871 959779 D TIGRFAM: polysaccharide export protein EpsE; PFAM: polysaccharide export protein; KEGG: azo:azo2242 putative polysaccharide export protein; polysaccharide export protein EpsE 958871..959779 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402964 YP_003166103.1 CDS CAP2UW1_0830 NC_013194.1 959799 961214 D TIGRFAM: chain length determinant protein EpsF; PFAM: lipopolysaccharide biosynthesis protein; KEGG: nmu:Nmul_A0243 lipopolysaccharide biosynthesis; chain length determinant protein EpsF 959799..961214 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402965 YP_003166104.1 CDS CAP2UW1_0831 NC_013194.1 961241 962125 D TIGRFAM: capsular exopolysaccharide family; chain length determinant protein tyrosine kinase EpsG; KEGG: pol:Bpro_1879 protein-tyrosine kinase; chain length determinant protein tyrosine kinase EpsG 961241..962125 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402966 YP_003166105.1 CDS CAP2UW1_0834 NC_013194.1 962878 963126 D KEGG: cph:Cpha266_1141 hypothetical protein; hypothetical protein 962878..963126 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402969 YP_003166106.1 CDS CAP2UW1_0835 NC_013194.1 963138 963413 D KEGG: cch:Cag_1066 hypothetical protein; hypothetical protein 963138..963413 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402970 YP_003166107.1 CDS CAP2UW1_0837 NC_013194.1 965222 966805 D PFAM: transposase IS66; KEGG: mgm:Mmc1_3392 transposase IS66; transposase IS66 965222..966805 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402972 YP_003166108.1 CDS CAP2UW1_0838 NC_013194.1 966913 967818 D TIGRFAM: eight transmembrane protein EpsH; exosortase 2; KEGG: nmu:Nmul_A0246 hypothetical protein; exosortase 2 966913..967818 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402973 YP_003166109.1 CDS CAP2UW1_0839 NC_013194.1 967823 968509 D TIGRFAM: EpsI family protein; KEGG: nmu:Nmul_A0247 hypothetical protein; EpsI family protein 967823..968509 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402974 YP_003166110.1 CDS CAP2UW1_0841 NC_013194.1 969979 970221 D KEGG: gme:Gmet_2500 hypothetical protein; hypothetical protein 969979..970221 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402976 YP_003166111.1 CDS CAP2UW1_0843 NC_013194.1 970651 971562 D TIGRFAM: eight transmembrane protein EpsH; exosortase 2; KEGG: nmu:Nmul_A0246 hypothetical protein; exosortase 2 970651..971562 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402978 YP_003166112.1 CDS CAP2UW1_0844 NC_013194.1 971595 972281 D TIGRFAM: EpsI family protein; KEGG: nmu:Nmul_A0247 hypothetical protein; EpsI family protein 971595..972281 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402979 YP_003166113.1 CDS CAP2UW1_0845 NC_013194.1 972329 973126 D PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2336 glycosyl transferase, family 2; family 2 glycosyl transferase 972329..973126 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402980 YP_003166114.1 CDS CAP2UW1_0846 NC_013194.1 973158 974270 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bch:Bcen2424_0237 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 973158..974270 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402981 YP_003166115.1 CDS CAP2UW1_0847 NC_013194.1 974295 974879 D KEGG: shw:Sputw3181_1469 transferase hexapeptide repeat containing protein; transferase hexapeptide repeat containing protein 974295..974879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402982 YP_003166116.1 CDS CAP2UW1_0848 NC_013194.1 974931 976181 D PFAM: polysaccharide biosynthesis protein; KEGG: mba:Mbar_A0025 hypothetical protein; polysaccharide biosynthesis protein 974931..976181 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402983 YP_003166117.1 CDS CAP2UW1_0849 NC_013194.1 976200 977786 D KEGG: rec:RHECIAT_CH0003464 putative exopolysaccharide production protein; hypothetical protein 976200..977786 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402984 YP_003166118.1 CDS CAP2UW1_0850 NC_013194.1 977783 978838 D PFAM: glycosyl transferase family 2; KEGG: tbd:Tbd_0313 rhamnosyl transferase related protein; family 2 glycosyl transferase 977783..978838 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402985 YP_003166119.1 CDS CAP2UW1_0851 NC_013194.1 978879 979889 D PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4359 glycosyl transferase family 2; family 2 glycosyl transferase 978879..979889 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402986 YP_003166120.1 CDS CAP2UW1_0852 NC_013194.1 980029 981006 D PFAM: Methyltransferase type 12; KEGG: pol:Bpro_2204 methyltransferase type 12; type 12 methyltransferase 980029..981006 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402987 YP_003166121.1 CDS CAP2UW1_0853 NC_013194.1 981159 982484 D PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase; transposase IS4 family protein 981159..982484 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402988 YP_003166122.1 CDS CAP2UW1_0854 NC_013194.1 982635 983459 D KEGG: gvi:gll4265 unknown protein; hypothetical protein 982635..983459 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402989 YP_003166123.1 CDS CAP2UW1_0855 NC_013194.1 983481 984641 D PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0253 glycosyl transferase, group 1; group 1 glycosyl transferase 983481..984641 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402990 YP_003166124.1 CDS CAP2UW1_0857 NC_013194.1 986513 988528 D PFAM: Heparinase II/III family protein; KEGG: aba:Acid345_3793 heparinase II/III-like; Heparinase II/III family protein 986513..988528 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402992 YP_003166125.1 CDS CAP2UW1_0858 NC_013194.1 988557 989870 D KEGG: pfl:PFL_1024 GDP-mannose 6-dehydrogenase AlgD; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 988557..989870 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402993 YP_003166126.1 CDS CAP2UW1_0859 NC_013194.1 989854 991062 D PFAM: glycosyl transferase group 1; KEGG: nar:Saro_3221 glycosyl transferase, group 1; group 1 glycosyl transferase 989854..991062 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402994 YP_003166127.1 CDS CAP2UW1_0860 NC_013194.1 991483 992208 D PFAM: protein of unknown function DUF1555; KEGG: mar:MAE_04300 hypothetical protein; hypothetical protein 991483..992208 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402995 YP_003166128.1 CDS CAP2UW1_0861 NC_013194.1 992554 993207 R KEGG: dar:Daro_1502 protein of unknown function DUF1555; hypothetical protein complement(992554..993207) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402996 YP_003166129.1 CDS CAP2UW1_0862 NC_013194.1 993331 993966 R KEGG: dar:Daro_1502 protein of unknown function DUF1555; hypothetical protein complement(993331..993966) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402997 YP_003166130.1 CDS CAP2UW1_0863 NC_013194.1 994540 995790 R KEGG: azo:azo2245 hypothetical secreted protein; hypothetical protein complement(994540..995790) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402998 YP_003166131.1 CDS CAP2UW1_0864 NC_013194.1 995919 997316 D TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; KEGG: azo:azo2246 putative glycosyltransferase; UDP-phosphate glucose phosphotransferase 995919..997316 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402999 YP_003166132.1 CDS CAP2UW1_0865 NC_013194.1 997306 997674 D KEGG: pol:Bpro_1880 VanZ like protein; VanZ-like protein 997306..997674 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403000 YP_003166133.1 CDS CAP2UW1_0866 NC_013194.1 997671 998336 D PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_3220 lytic transglycosylase, catalytic; lytic transglycosylase subunit 997671..998336 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403001 YP_003166134.1 CDS CAP2UW1_0867 NC_013194.1 998452 999465 R KEGG: gvi:gll2920 unknown protein; hypothetical protein complement(998452..999465) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403002 YP_003166135.1 CDS CAP2UW1_0868 NC_013194.1 999574 1000359 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein complement(999574..1000359) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403003 YP_003166136.1 CDS CAP2UW1_0869 NC_013194.1 1000356 1001444 R PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase; integrase catalytic subunit complement(1000356..1001444) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403004 YP_003166137.1 CDS CAP2UW1_0870 NC_013194.1 1001514 1001918 R hypothetical protein complement(1001514..1001918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403005 YP_003166138.1 CDS CAP2UW1_0872 NC_013194.1 1002853 1003539 D KEGG: lch:Lcho_1593 protein of unknown function DUF1555; hypothetical protein 1002853..1003539 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403007 YP_003166139.1 CDS CAP2UW1_0873 NC_013194.1 1004439 1009235 D KEGG: rec:RHECIAT_CH0000808 putative rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; PFAM: Hemolysin-type calcium-binding region; Peptidase M10 serralysin; SMART: peptidase metallopeptidase; Serralysin 1004439..1009235 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403008 YP_003166140.1 CDS CAP2UW1_0874 NC_013194.1 1009302 1009499 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(1009302..1009499) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403009 YP_003166141.1 CDS CAP2UW1_0875 NC_013194.1 1009496 1010290 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(1009496..1010290) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403010 YP_003166142.1 CDS CAP2UW1_0876 NC_013194.1 1010293 1011615 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit complement(1010293..1011615) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403011 YP_003166143.1 CDS CAP2UW1_0877 NC_013194.1 1011745 1012269 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(1011745..1012269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403012 YP_003166144.1 CDS CAP2UW1_0878 NC_013194.1 1012458 1012673 D KEGG: sme:SMb20079 putative hemolysin-adenlyate cyclase protein; putative hemolysin-adenlyate cyclase protein 1012458..1012673 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403013 YP_003166145.1 CDS CAP2UW1_0879 NC_013194.1 1012786 1013433 R PFAM: protein of unknown function UPF0016; KEGG: dar:Daro_0933 hypothetical protein; hypothetical protein complement(1012786..1013433) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403014 YP_003166146.1 CDS CAP2UW1_0880 NC_013194.1 1013741 1015087 D KEGG: azo:azo2655 hypothetical membrane protein; hypothetical protein 1013741..1015087 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403015 YP_003166147.1 CDS CAP2UW1_0881 NC_013194.1 1015163 1018579 R PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mac:MA2418 type I site-specific deoxyribonuclease protein R; type III restriction protein res subunit complement(1015163..1018579) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403016 YP_003166148.1 CDS CAP2UW1_0882 NC_013194.1 1018576 1019754 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein; filamentation induced by cAMP protein Fic complement(1018576..1019754) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403017 YP_003166149.1 CDS CAP2UW1_0883 NC_013194.1 1019860 1021071 R KEGG: hch:HCH_05028 restriction endonuclease S subunit; Restriction endonuclease S subunits-like protein complement(1019860..1021071) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403018 YP_003166150.1 CDS CAP2UW1_0884 NC_013194.1 1021068 1022618 R PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: rfr:Rfer_1059 N-6 DNA methylase; N-6 DNA methylase complement(1021068..1022618) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403019 YP_003166151.1 CDS CAP2UW1_0885 NC_013194.1 1023177 1023455 D PFAM: Protein of unknown function DUF1778; KEGG: eba:ebB58 hypothetical protein; hypothetical protein 1023177..1023455 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403020 YP_003166152.1 CDS CAP2UW1_0886 NC_013194.1 1023452 1023946 D PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA2001 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1023452..1023946 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403021 YP_003166153.1 CDS CAP2UW1_0887 NC_013194.1 1024518 1025210 D PFAM: protein of unknown function UPF0005; KEGG: dar:Daro_0852 hypothetical protein; hypothetical protein 1024518..1025210 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403023 YP_003166154.1 CDS CAP2UW1_0888 NC_013194.1 1025262 1026137 R PFAM: polysaccharide deacetylase; KEGG: cvi:CV_0745 hypothetical protein; polysaccharide deacetylase complement(1025262..1026137) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403024 YP_003166155.1 CDS CAP2UW1_0889 NC_013194.1 1026189 1026560 R PFAM: protein of unknown function DUF498; KEGG: dar:Daro_2388 protein of unknown function DUF598; hypothetical protein complement(1026189..1026560) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403025 YP_003166156.1 CDS CAP2UW1_0890 NC_013194.1 1026707 1027891 D PFAM: aminotransferase class I and II; KEGG: bpt:Bpet2748 putative aminotransferase; aminotransferase 1026707..1027891 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403026 YP_003166157.1 CDS CAP2UW1_0891 NC_013194.1 1027901 1029154 D PFAM: aminotransferase class I and II; KEGG: eba:ebA4951 aminotransferase AlaT; class I/II aminotransferase 1027901..1029154 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403027 YP_003166158.1 CDS CAP2UW1_0892 NC_013194.1 1029185 1030537 D PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: azo:azo2081 homoserine dehydrogenase; Homoserine dehydrogenase 1029185..1030537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403028 YP_003166159.1 CDS CAP2UW1_0893 NC_013194.1 1030698 1033748 D PFAM: peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: glo:Glov_1608 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 1030698..1033748 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403029 YP_003166160.1 CDS CAP2UW1_0894 NC_013194.1 1033772 1034935 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA3792 predicted acyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F 1033772..1034935 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403030 YP_003166161.1 CDS CAP2UW1_0895 NC_013194.1 1034959 1035858 D PFAM: Auxin Efflux Carrier; KEGG: dar:Daro_0262 auxin efflux carrier; auxin efflux carrier 1034959..1035858 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403031 YP_003166162.1 CDS CAP2UW1_0896 NC_013194.1 1035852 1036742 R PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: xau:Xaut_0996 protein phosphatase 2C-like protein; protein serine/threonine phosphatase complement(1035852..1036742) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403032 YP_003166163.1 CDS CAP2UW1_0897 NC_013194.1 1037053 1038204 D PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_4053 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1037053..1038204 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403033 YP_003166164.1 CDS CAP2UW1_0898 NC_013194.1 1038272 1039084 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_0923 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(1038272..1039084) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403034 YP_003166165.1 CDS CAP2UW1_0899 NC_013194.1 1039113 1040138 R PFAM: aldo/keto reductase; KEGG: spe:Spro_0648 aldo/keto reductase; aldo/keto reductase complement(1039113..1040138) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403035 YP_003166166.1 CDS CAP2UW1_0900 NC_013194.1 1040197 1041090 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pna:Pnap_1061 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein complement(1040197..1041090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403036 YP_003166167.1 CDS CAP2UW1_0901 NC_013194.1 1041154 1041744 R KEGG: dar:Daro_4079 cytochrome c family protein; cytochrome c family protein complement(1041154..1041744) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403037 YP_003166168.1 CDS CAP2UW1_0902 NC_013194.1 1041851 1042918 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: pfo:PflO1_4881 cobalamin synthesis protein/P47K; cobalamin synthesis protein P47K complement(1041851..1042918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403038 YP_003166169.1 CDS CAP2UW1_0903 NC_013194.1 1043008 1043205 R PFAM: protein of unknown function DUF466; KEGG: rfr:Rfer_2450 protein of unknown function DUF466; hypothetical protein complement(1043008..1043205) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403039 YP_003166170.1 CDS CAP2UW1_0904 NC_013194.1 1043211 1045274 R PFAM: carbon starvation protein CstA; KEGG: rfr:Rfer_2451 carbon starvation protein CstA; carbon starvation protein CstA complement(1043211..1045274) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403040 YP_003166171.1 CDS CAP2UW1_0905 NC_013194.1 1045714 1046472 R PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_2208 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(1045714..1046472) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403041 YP_003166172.1 CDS CAP2UW1_0906 NC_013194.1 1046486 1047862 R KEGG: rme:Rmet_1470 hypothetical protein; hypothetical protein complement(1046486..1047862) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403042 YP_003166173.1 CDS CAP2UW1_0907 NC_013194.1 1047859 1048410 R KEGG: rme:Rmet_1471 hypothetical protein; hypothetical protein complement(1047859..1048410) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403043 YP_003166174.1 CDS CAP2UW1_0908 NC_013194.1 1048741 1050687 R PFAM: KAP P-loop domain protein; KEGG: rme:Rmet_1472 kap P-loop; KAP P-loop domain-containing protein complement(1048741..1050687) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403044 YP_003166175.1 CDS CAP2UW1_0909 NC_013194.1 1050779 1050880 R KEGG: tbd:Tbd_1491 adenine specific DNA-methyltransferase; adenine specific DNA-methyltransferase complement(1050779..1050880) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403045 YP_003166176.1 CDS CAP2UW1_0910 NC_013194.1 1050920 1052506 R PFAM: transposase IS66; KEGG: mgm:Mmc1_1134 transposase IS66; transposase IS66 complement(1050920..1052506) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403046 YP_003166177.1 CDS CAP2UW1_0911 NC_013194.1 1052588 1053100 D hypothetical protein 1052588..1053100 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403047 YP_003166178.1 CDS CAP2UW1_0912 NC_013194.1 1053450 1053986 R hypothetical protein complement(1053450..1053986) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403048 YP_003166179.1 CDS CAP2UW1_0913 NC_013194.1 1053979 1054695 R unknown function; when overproduced it confers drug-resistance; putative two-component response-regulatory protein YehT complement(1053979..1054695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403049 YP_003166180.1 CDS CAP2UW1_0914 NC_013194.1 1054689 1056395 R PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; SMART: GAF domain protein; KEGG: rfr:Rfer_2453 histidine kinase internal protein; signal transduction histidine kinase LytS complement(1054689..1056395) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403050 YP_003166181.1 CDS CAP2UW1_0915 NC_013194.1 1056471 1057730 R KEGG: rfr:Rfer_2477 hypothetical protein; hypothetical protein complement(1056471..1057730) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403051 YP_003166182.1 CDS CAP2UW1_0916 NC_013194.1 1057874 1058071 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(1057874..1058071) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403052 YP_003166183.1 CDS CAP2UW1_0917 NC_013194.1 1058068 1058862 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(1058068..1058862) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403053 YP_003166184.1 CDS CAP2UW1_0918 NC_013194.1 1058865 1060187 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit complement(1058865..1060187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403054 YP_003166185.1 CDS CAP2UW1_0919 NC_013194.1 1060317 1060841 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(1060317..1060841) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403055 YP_003166186.1 CDS CAP2UW1_0920 NC_013194.1 1060990 1062687 R KEGG: rfr:Rfer_2477 hypothetical protein; hypothetical protein complement(1060990..1062687) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403056 YP_003166187.1 CDS CAP2UW1_0921 NC_013194.1 1062926 1063252 D KEGG: dar:Daro_0778 possible flagellar biosynthetic protein; putative flagellar biosynthetic protein 1062926..1063252 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403057 YP_003166188.1 CDS CAP2UW1_0922 NC_013194.1 1063326 1064123 D PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: dar:Daro_0777 YcgR; YcgR family protein 1063326..1064123 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403058 YP_003166189.1 CDS CAP2UW1_0923 NC_013194.1 1064230 1064601 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(1064230..1064601) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403059 YP_003166190.1 CDS CAP2UW1_0924 NC_013194.1 1064598 1064996 R PFAM: fumarate reductase subunit C; KEGG: cvi:CV_3367 fumarate reductase, subunit C; fumarate reductase subunit C complement(1064598..1064996) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403060 YP_003166191.1 CDS CAP2UW1_0925 NC_013194.1 1064993 1065748 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(1064993..1065748) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403061 YP_003166192.1 CDS CAP2UW1_0926 NC_013194.1 1065741 1067528 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(1065741..1067528) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403062 YP_003166193.1 CDS CAP2UW1_0927 NC_013194.1 1067611 1068498 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mgm:Mmc1_2223 methyltransferase type 11; type 11 methyltransferase complement(1067611..1068498) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403063 YP_003166194.1 CDS CAP2UW1_0928 NC_013194.1 1068557 1069345 R PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_3841 TatD-related deoxyribonuclease; TatD-like deoxyribonuclease complement(1068557..1069345) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403064 YP_003166195.1 CDS CAP2UW1_0929 NC_013194.1 1069361 1070596 R PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_3842 D-amino acid dehydrogenase small subunit; D-amino-acid dehydrogenase complement(1069361..1070596) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403065 YP_003166196.1 CDS CAP2UW1_0930 NC_013194.1 1070593 1072791 R KEGG: dar:Daro_3843 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(1070593..1072791) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403066 YP_003166197.1 CDS CAP2UW1_0931 NC_013194.1 1072827 1073033 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1072827..1073033) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403067 YP_003166198.1 CDS gmk NC_013194.1 1073052 1073663 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1073052..1073663) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403068 YP_003166199.1 CDS CAP2UW1_0933 NC_013194.1 1073813 1074169 D KEGG: dar:Daro_1533 hypothetical protein; hypothetical protein 1073813..1074169 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403069 YP_003166200.1 CDS CAP2UW1_0934 NC_013194.1 1074309 1075175 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: dar:Daro_3848 hypothetical protein; hypothetical protein complement(1074309..1075175) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403070 YP_003166201.1 CDS CAP2UW1_0935 NC_013194.1 1075281 1076234 D PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_3849 serine/threonine protein kinase; serine/threonine protein kinase 1075281..1076234 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403071 YP_003166202.1 CDS CAP2UW1_0936 NC_013194.1 1076231 1077148 D SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3850 protein phosphatase 2C-like; protein serine/threonine phosphatase 1076231..1077148 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403072 YP_003166203.1 CDS rph NC_013194.1 1077163 1077879 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1077163..1077879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403073 YP_003166204.1 CDS CAP2UW1_0938 NC_013194.1 1077876 1078463 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1077876..1078463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403074 YP_003166205.1 CDS CAP2UW1_0939 NC_013194.1 1078463 1079716 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1078463..1079716 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403075 YP_003166206.1 CDS CAP2UW1_0940 NC_013194.1 1079766 1080926 R KEGG: dar:Daro_3110 ankyrin; ankyrin complement(1079766..1080926) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403076 YP_003166207.1 CDS CAP2UW1_0941 NC_013194.1 1081018 1081548 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dar:Daro_3111 TonB, C-terminal; TonB family protein 1081018..1081548 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403077 YP_003166208.1 CDS CAP2UW1_0942 NC_013194.1 1081507 1082250 R KEGG: azo:azo3968 tRNA (guanine-N(7))-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(1081507..1082250) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403078 YP_003166209.1 CDS thiG NC_013194.1 1082253 1083047 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(1082253..1083047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403079 YP_003166210.1 CDS CAP2UW1_0944 NC_013194.1 1083071 1083271 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: tbd:Tbd_2127 thiamine-biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(1083071..1083271) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403080 YP_003166211.1 CDS CAP2UW1_0945 NC_013194.1 1083420 1083965 D PFAM: Lipocalin family protein; KEGG: pat:Patl_0580 lipocalin-like; Lipocalin family protein 1083420..1083965 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403081 YP_003166212.1 CDS CAP2UW1_0946 NC_013194.1 1083958 1084497 D PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: rfr:Rfer_1050 hypothetical protein; NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 1083958..1084497 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403082 YP_003166213.1 CDS CAP2UW1_0947 NC_013194.1 1084621 1085352 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1084621..1085352) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403083 YP_003166214.1 CDS CAP2UW1_0948 NC_013194.1 1085453 1088923 R KEGG: dar:Daro_0559 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1085453..1088923) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403084 YP_003166215.1 CDS CAP2UW1_0949 NC_013194.1 1089021 1089644 R KEGG: dar:Daro_0550 putative partition-related protein; putative partition-like protein complement(1089021..1089644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403085 YP_003166216.1 CDS CAP2UW1_0950 NC_013194.1 1089641 1090990 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor, TAXI family complement(1089641..1090990) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403086 YP_003166217.1 CDS CAP2UW1_0951 NC_013194.1 1090990 1091964 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dar:Daro_0548 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase zinc-binding domain-containing protein complement(1090990..1091964) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403087 YP_003166218.1 CDS CAP2UW1_0952 NC_013194.1 1092169 1094343 R PFAM: UvrD/REP helicase; KEGG: dar:Daro_0546 ATP-dependent DNA helicase UvrD; UvrD/REP helicase complement(1092169..1094343) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403088 YP_003166219.1 CDS CAP2UW1_0953 NC_013194.1 1094362 1095366 R PFAM: Di-haem cytochrome c peroxidase; KEGG: swd:Swoo_2378 cytochrome-c peroxidase; cytochrome-c peroxidase complement(1094362..1095366) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403089 YP_003166220.1 CDS CAP2UW1_0954 NC_013194.1 1095532 1097487 R PFAM: acyltransferase 3; KEGG: sus:Acid_1188 acyltransferase 3; acyltransferase 3 complement(1095532..1097487) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403090 YP_003166221.1 CDS CAP2UW1_0955 NC_013194.1 1097612 1098337 R TIGRFAM: methyltransferase FkbM family; KEGG: syp:SYNPCC7002_A1141 methyltransferase, FkbM family protein; FkbM family methyltransferase complement(1097612..1098337) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403091 YP_003166222.1 CDS CAP2UW1_0956 NC_013194.1 1098477 1099388 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bph:Bphy_4697 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1098477..1099388) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403092 YP_003166223.1 CDS CAP2UW1_0957 NC_013194.1 1099505 1100587 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1099505..1100587 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403093 YP_003166224.1 CDS CAP2UW1_0958 NC_013194.1 1100649 1101524 D PFAM: phosphoribulokinase/uridine kinase; KEGG: bph:Bphy_5952 phosphoribulokinase; phosphoribulokinase 1100649..1101524 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403094 YP_003166225.1 CDS CAP2UW1_0959 NC_013194.1 1101584 1103623 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: azo:azo2836 transketolase; transketolase 1101584..1103623 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403095 YP_003166226.1 CDS CAP2UW1_0960 NC_013194.1 1103710 1104264 R PFAM: Cache type 2 domain protein; KEGG: rpe:RPE_3971 cache, type 2 domain protein; putative cache sensor protein complement(1103710..1104264) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403096 YP_003166227.1 CDS CAP2UW1_0961 NC_013194.1 1104357 1104920 R PFAM: GPR1/FUN34/yaaH family protein; KEGG: rpe:RPE_3970 GPR1/FUN34/YaaH family protein; GPR1/FUN34/yaaH family protein complement(1104357..1104920) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403097 YP_003166228.1 CDS CAP2UW1_0962 NC_013194.1 1105313 1106539 R PFAM: chemotaxis sensory transducer; KEGG: azo:azo3937 putative aerotaxis receptor; methyl-accepting chemotaxis sensory transducer complement(1105313..1106539) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403098 YP_003166229.1 CDS CAP2UW1_0963 NC_013194.1 1106577 1108862 D KEGG: lpn:lpg2069 transposase Tn5; hypothetical protein 1106577..1108862 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403099 YP_003166230.1 CDS CAP2UW1_0964 NC_013194.1 1108789 1109328 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: dar:Daro_1363 PAS; putative PAS/PAC sensor protein complement(1108789..1109328) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403100 YP_003166231.1 CDS CAP2UW1_0965 NC_013194.1 1109508 1111613 D TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: dar:Daro_0574 methionyl-tRNA synthetase; methionyl-tRNA synthetase 1109508..1111613 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403101 YP_003166232.1 CDS CAP2UW1_0966 NC_013194.1 1111619 1111879 D KEGG: dar:Daro_0573 hypothetical protein; hypothetical protein 1111619..1111879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403102 YP_003166233.1 CDS CAP2UW1_0967 NC_013194.1 1112088 1112690 D KEGG: eba:ebA6243 hypothetical protein; hypothetical protein 1112088..1112690 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403103 YP_003166234.1 CDS CAP2UW1_0968 NC_013194.1 1112687 1114183 D PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A2668 long-chain acyl-CoA synthetases (AMP-forming); AMP-dependent synthetase and ligase 1112687..1114183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403104 YP_003166235.1 CDS CAP2UW1_0969 NC_013194.1 1114170 1114832 D KEGG: psa:PST_0909 carbamoylphosphate synthase large subunit (split gene in MJ); carbamoylphosphate synthase large subunit 1114170..1114832 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403105 YP_003166236.1 CDS CAP2UW1_0970 NC_013194.1 1114823 1115614 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psa:PST_0908 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1114823..1115614 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403106 YP_003166237.1 CDS CAP2UW1_0971 NC_013194.1 1115639 1116298 D KEGG: psa:PST_0907 hypothetical protein; hypothetical protein 1115639..1116298 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403107 YP_003166238.1 CDS CAP2UW1_0972 NC_013194.1 1116299 1116961 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bte:BTH_I0673 DNA-binding response regulator; winged helix family two component transcriptional regulator 1116299..1116961 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403108 YP_003166239.1 CDS CAP2UW1_0973 NC_013194.1 1116961 1118337 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2816 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 1116961..1118337 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403109 YP_003166240.1 CDS CAP2UW1_0974 NC_013194.1 1118993 1119700 R KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein complement(1118993..1119700) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403110 YP_003166241.1 CDS CAP2UW1_0975 NC_013194.1 1119811 1123146 R KEGG: azc:AZC_1915 hypothetical protein; hypothetical protein complement(1119811..1123146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403111 YP_003166242.1 CDS CAP2UW1_0976 NC_013194.1 1123197 1123571 R hypothetical protein complement(1123197..1123571) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403112 YP_003166243.1 CDS CAP2UW1_0978 NC_013194.1 1124808 1125125 D hypothetical protein 1124808..1125125 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403114 YP_003166244.1 CDS CAP2UW1_0979 NC_013194.1 1125203 1126327 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(1125203..1126327) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403115 YP_003166245.1 CDS ubiB NC_013194.1 1126361 1127893 R an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions; putative ubiquinone biosynthesis protein UbiB complement(1126361..1127893) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403116 YP_003166246.1 CDS argS NC_013194.1 1128032 1129804 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1128032..1129804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403117 YP_003166247.1 CDS CAP2UW1_0982 NC_013194.1 1129825 1130610 D PFAM: Sporulation domain protein; KEGG: dar:Daro_3865 sporulation related; Sporulation domain-containing protein 1129825..1130610 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403118 YP_003166248.1 CDS CAP2UW1_0983 NC_013194.1 1130631 1131278 D PFAM: DSBA oxidoreductase; KEGG: dar:Daro_3864 twin-arginine translocation pathway signal; DSBA oxidoreductase 1130631..1131278 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403119 YP_003166249.1 CDS CAP2UW1_0984 NC_013194.1 1131381 1132151 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_3863 short chain dehydrogenase; short chain dehydrogenase 1131381..1132151 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403120 YP_003166250.1 CDS CAP2UW1_0985 NC_013194.1 1132231 1133388 D PFAM: domain of unknown function DUF1745; KEGG: dar:Daro_4141 hypothetical protein; hypothetical protein 1132231..1133388 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403121 YP_003166251.1 CDS CAP2UW1_0986 NC_013194.1 1133400 1137287 D KEGG: rxy:Rxyl_2663 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1133400..1137287 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403122 YP_003166252.1 CDS CAP2UW1_0987 NC_013194.1 1137366 1138091 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo2451 short-chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR complement(1137366..1138091) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403123 YP_003166253.1 CDS CAP2UW1_0988 NC_013194.1 1138130 1138939 D PFAM: periplasmic binding protein; KEGG: eba:ebA3624 predicted ABC-type Fe3+-hydroxamate transport system, periplasmic component; periplasmic-binding protein 1138130..1138939 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403124 YP_003166254.1 CDS CAP2UW1_0989 NC_013194.1 1139004 1140017 D PFAM: peptidase U32; KEGG: dar:Daro_0109 peptidase U32; peptidase U32 1139004..1140017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403125 YP_003166255.1 CDS CAP2UW1_0990 NC_013194.1 1140027 1140962 D PFAM: peptidase U32; KEGG: dar:Daro_0108 peptidase U32; peptidase U32 1140027..1140962 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403126 YP_003166256.1 CDS CAP2UW1_0991 NC_013194.1 1140959 1141411 D KEGG: dar:Daro_0107 hypothetical protein; hypothetical protein 1140959..1141411 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403127 YP_003166257.1 CDS CAP2UW1_0992 NC_013194.1 1141450 1142463 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: bpt:Bpet2951 hypothetical protein; hypothetical protein 1141450..1142463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403128 YP_003166258.1 CDS CAP2UW1_0993 NC_013194.1 1142460 1143197 D KEGG: cyb:CYB_2397 hypothetical protein; hypothetical protein 1142460..1143197 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403129 YP_003166259.1 CDS CAP2UW1_0994 NC_013194.1 1143409 1143816 D KEGG: sat:SYN_02034 hypothetical cytosolic protein; hypothetical protein 1143409..1143816 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403130 YP_003166260.1 CDS CAP2UW1_0995 NC_013194.1 1143935 1144285 R PFAM: protein of unknown function DUF190; KEGG: bac:BamMC406_0817 protein of unknown function DUF190; hypothetical protein complement(1143935..1144285) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403131 YP_003166261.1 CDS CAP2UW1_0996 NC_013194.1 1144365 1144748 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: ppw:PputW619_2862 CrcB protein; CrcB protein complement(1144365..1144748) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403132 YP_003166262.1 CDS CAP2UW1_0997 NC_013194.1 1145100 1145615 R TIGRFAM: hydrogenase maturation protease; KEGG: dar:Daro_0983 HoxW protein; hydrogenase maturation protease complement(1145100..1145615) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403133 YP_003166263.1 CDS CAP2UW1_0998 NC_013194.1 1145649 1147121 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dar:Daro_0982 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(1145649..1147121) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403134 YP_003166264.1 CDS CAP2UW1_0999 NC_013194.1 1147130 1147684 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: azo:azo1414 probable hydrogen dehydrogenase, delta subunit; Hydrogen dehydrogenase complement(1147130..1147684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403135 YP_003166265.1 CDS CAP2UW1_1000 NC_013194.1 1147686 1148429 R PFAM: ferredoxin; KEGG: azo:azo1413 probable hydrogen dehydrogenase, gamma subunit; ferredoxin complement(1147686..1148429) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403136 YP_003166266.1 CDS CAP2UW1_1001 NC_013194.1 1148426 1150252 R PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mag:amb3393 NAD-reducing hydrogenase diaphorase moiety largesubunit; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit complement(1148426..1150252) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403137 YP_003166267.1 CDS CAP2UW1_1002 NC_013194.1 1150489 1151907 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: dar:Daro_0975 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 1150489..1151907 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403138 YP_003166268.1 CDS CAP2UW1_1003 NC_013194.1 1152176 1155085 D TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; KEGG: dar:Daro_0964 ribonucleotide reductase large subunit; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 1152176..1155085 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403139 YP_003166269.1 CDS CAP2UW1_1004 NC_013194.1 1155265 1155504 D KEGG: sme:SMb20628 hypothetical protein; hypothetical protein 1155265..1155504 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403140 YP_003166270.1 CDS CAP2UW1_1005 NC_013194.1 1155501 1155785 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppd:Ppro_3843 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin 1155501..1155785 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403141 YP_003166271.1 CDS CAP2UW1_1006 NC_013194.1 1155927 1156091 D hypothetical protein 1155927..1156091 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403142 YP_003166272.1 CDS CAP2UW1_1007 NC_013194.1 1156387 1156575 D hypothetical protein 1156387..1156575 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403143 YP_003166273.1 CDS CAP2UW1_1008 NC_013194.1 1156666 1157667 D KEGG: bba:Bd0514 hypothetical protein; hypothetical protein 1156666..1157667 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403144 YP_003166274.1 CDS CAP2UW1_1009 NC_013194.1 1157866 1158087 D hypothetical protein 1157866..1158087 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403145 YP_003166275.1 CDS CAP2UW1_1010 NC_013194.1 1158140 1159150 D PFAM: peptidase M28; KEGG: scl:sce7994 hypothetical protein; peptidase M28 1158140..1159150 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403146 YP_003166276.1 CDS CAP2UW1_1011 NC_013194.1 1159351 1159803 D KEGG: ago:AGOS_ADR187W ADR187Wp; hypothetical protein 1159351..1159803 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403147 YP_003166277.1 CDS CAP2UW1_1012 NC_013194.1 1159913 1160047 R hypothetical protein complement(1159913..1160047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403148 YP_003166278.1 CDS CAP2UW1_1013 NC_013194.1 1160444 1160710 R PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein complement(1160444..1160710) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403149 YP_003166279.1 CDS CAP2UW1_1014 NC_013194.1 1160766 1162211 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bpd:BURPS668_0735 putative ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase domain-containing protein complement(1160766..1162211) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403150 YP_003166280.1 CDS CAP2UW1_1015 NC_013194.1 1162614 1165760 R KEGG: rpt:Rpal_3627 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(1162614..1165760) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403151 YP_003166281.1 CDS CAP2UW1_1016 NC_013194.1 1165987 1167234 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mgm:Mmc1_0912 protein of unknown function DUF21; hypothetical protein complement(1165987..1167234) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403152 YP_003166282.1 CDS CAP2UW1_1017 NC_013194.1 1167227 1168609 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: mgm:Mmc1_0911 protein of unknown function DUF21; hypothetical protein complement(1167227..1168609) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403153 YP_003166283.1 CDS CAP2UW1_1018 NC_013194.1 1168988 1169431 D TIGRFAM: queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: dar:Daro_0854 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; queuosine biosynthesis protein QueD 1168988..1169431 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403154 YP_003166284.1 CDS CAP2UW1_1019 NC_013194.1 1169485 1170252 D PFAM: Allophanate hydrolase subunit 1; KEGG: azo:azo0045 hypothetical protein; Allophanate hydrolase subunit 1 1169485..1170252 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403155 YP_003166285.1 CDS CAP2UW1_1020 NC_013194.1 1170249 1171319 D TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: azo:azo0044 conserved hypothetical UreA amidolyase-related protein; urea amidolyase-like protein 1170249..1171319 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403156 YP_003166286.1 CDS CAP2UW1_1021 NC_013194.1 1171316 1172128 D PFAM: LamB/YcsF family protein; KEGG: azo:azo0043 hypothetical protein; LamB/YcsF family protein 1171316..1172128 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403157 YP_003166287.1 CDS CAP2UW1_1022 NC_013194.1 1172239 1173351 D PFAM: AFG1-family ATPase; KEGG: dar:Daro_2856 AFG1-like ATPase; AFG1-family ATPase 1172239..1173351 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403158 YP_003166288.1 CDS CAP2UW1_1023 NC_013194.1 1173362 1174261 D PFAM: NolW domain protein; KEGG: dar:Daro_2854 hypothetical protein; NolW domain-containing protein 1173362..1174261 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403159 YP_003166289.1 CDS CAP2UW1_1024 NC_013194.1 1174282 1175193 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: cau:Caur_1952 diguanylate cyclase; diguanylate cyclase complement(1174282..1175193) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403160 YP_003166290.1 CDS CAP2UW1_1025 NC_013194.1 1175319 1176602 R KEGG: dar:Daro_2851 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(1175319..1176602) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403161 YP_003166291.1 CDS CAP2UW1_1026 NC_013194.1 1176633 1176875 R hypothetical protein complement(1176633..1176875) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403162 YP_003166292.1 CDS CAP2UW1_1027 NC_013194.1 1176865 1178013 R PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: hha:Hhal_1357 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(1176865..1178013) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403163 YP_003166293.1 CDS CAP2UW1_1028 NC_013194.1 1178276 1179490 R TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; KEGG: eba:ebA6842 5-methylaminomethyl-2-thiouridine methyltransferase; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC complement(1178276..1179490) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403164 YP_003166294.1 CDS lysS NC_013194.1 1179518 1181032 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1179518..1181032) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403165 YP_003166295.1 CDS CAP2UW1_1030 NC_013194.1 1181113 1182156 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tbd:Tbd_0921 bacterial peptide chain release factor 2 (bRF-2); peptide chain release factor 2 complement(1181113..1182156) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403166 YP_003166296.1 CDS CAP2UW1_1031 NC_013194.1 1182310 1183320 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_1825 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1182310..1183320) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403167 YP_003166297.1 CDS CAP2UW1_1032 NC_013194.1 1183362 1183481 D hypothetical protein 1183362..1183481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403168 YP_003166298.1 CDS CAP2UW1_1033 NC_013194.1 1183478 1184845 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: spl:Spea_3056 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase 1183478..1184845 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403169 YP_003166299.1 CDS CAP2UW1_1034 NC_013194.1 1184842 1185726 D PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_4164 hypothetical protein; putative signal transduction protein 1184842..1185726 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403170 YP_003166300.1 CDS CAP2UW1_1035 NC_013194.1 1185729 1186586 R PFAM: protein of unknown function DUF299; KEGG: ccr:CC_0001 hypothetical protein; hypothetical protein complement(1185729..1186586) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403171 YP_003166301.1 CDS CAP2UW1_1036 NC_013194.1 1186619 1187371 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azc:AZC_0933 3-hydroxyacyl-CoA dehydrogenase type II; short-chain dehydrogenase/reductase SDR complement(1186619..1187371) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403172 YP_003166302.1 CDS CAP2UW1_1037 NC_013194.1 1187576 1188835 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region; integrase catalytic subunit 1187576..1188835 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403173 YP_003166303.1 CDS CAP2UW1_1038 NC_013194.1 1189324 1190154 D PFAM: protein of unknown function DUF1555; KEGG: sus:Acid_3967 hypothetical protein; hypothetical protein 1189324..1190154 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403174 YP_003166304.1 CDS CAP2UW1_1039 NC_013194.1 1190279 1192000 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dar:Daro_2838 RecJ exonuclease; single-stranded-DNA-specific exonuclease RecJ complement(1190279..1192000) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403175 YP_003166305.1 CDS CAP2UW1_1040 NC_013194.1 1191997 1193049 R KEGG: dar:Daro_2837 hypothetical protein; hypothetical protein complement(1191997..1193049) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403176 YP_003166306.1 CDS CAP2UW1_1041 NC_013194.1 1193220 1194467 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: dar:Daro_2836 lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system, transmembrane protein, LolC/E family 1193220..1194467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403177 YP_003166307.1 CDS CAP2UW1_1042 NC_013194.1 1194460 1195146 D KEGG: eba:ebA5820 probable ATP-binding component, ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1194460..1195146 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403178 YP_003166308.1 CDS CAP2UW1_1043 NC_013194.1 1195231 1197252 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_2834 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1195231..1197252 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403179 YP_003166309.1 CDS CAP2UW1_1044 NC_013194.1 1197436 1198269 D KEGG: dar:Daro_2832 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein:DNA internalization-like competence protein ComEC/Rec2 1197436..1198269 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403180 YP_003166310.1 CDS CAP2UW1_1045 NC_013194.1 1198825 1200150 R PFAM: transposase IS4 family protein; KEGG: eba:ebA3230 transposase; transposase IS4 family protein complement(1198825..1200150) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403181 YP_003166311.1 CDS CAP2UW1_1046 NC_013194.1 1200322 1200630 D hypothetical protein 1200322..1200630 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403182 YP_003166312.1 CDS CAP2UW1_1047 NC_013194.1 1201366 1203684 D TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: dar:Daro_2832 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2; DNA internalization-like competence protein ComEC/Rec2 1201366..1203684 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403183 YP_003166313.1 CDS CAP2UW1_1048 NC_013194.1 1204048 1204356 R TIGRFAM: addiction module antidote protein; KEGG: xfn:XfasM23_2207 putative transcriptional regulator; putative transcriptional regulator complement(1204048..1204356) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403184 YP_003166314.1 CDS CAP2UW1_1049 NC_013194.1 1204360 1204596 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: xfn:XfasM23_2208 addiction module killer protein; addiction module killer protein complement(1204360..1204596) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403185 YP_003166315.1 CDS CAP2UW1_1050 NC_013194.1 1204663 1205400 R PFAM: protein of unknown function DUF1568; KEGG: mfa:Mfla_0477 protein of unknown function DUF1568; hypothetical protein complement(1204663..1205400) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403186 YP_003166316.1 CDS CAP2UW1_1051 NC_013194.1 1205418 1205528 R hypothetical protein complement(1205418..1205528) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403187 YP_003166317.1 CDS CAP2UW1_1053 NC_013194.1 1206227 1206595 R hypothetical protein complement(1206227..1206595) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403189 YP_003166318.1 CDS CAP2UW1_1054 NC_013194.1 1206794 1207162 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hch:HCH_03828 lactoylglutathione lyase; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1206794..1207162) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403190 YP_003166319.1 CDS CAP2UW1_1055 NC_013194.1 1207250 1207684 R KEGG: bvi:Bcep1808_7338 hypothetical protein; hypothetical protein complement(1207250..1207684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403191 YP_003166320.1 CDS CAP2UW1_1056 NC_013194.1 1207803 1208030 D KEGG: mpt:Mpe_A0696 phage integrase; hypothetical protein 1207803..1208030 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403192 YP_003166321.1 CDS CAP2UW1_1058 NC_013194.1 1208668 1209567 D PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1513 probable hydrolase; alpha/beta hydrolase fold protein 1208668..1209567 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403194 YP_003166322.1 CDS CAP2UW1_1059 NC_013194.1 1209572 1210351 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_2830 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1209572..1210351 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403195 YP_003166323.1 CDS CAP2UW1_1060 NC_013194.1 1210403 1211179 R PFAM: protein of unknown function DUF980; KEGG: dar:Daro_2829 protein of unknown function DUF980; hypothetical protein complement(1210403..1211179) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403196 YP_003166324.1 CDS CAP2UW1_1061 NC_013194.1 1211176 1212081 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2828 protein of unknown function DUF6, transmembrane; hypothetical protein complement(1211176..1212081) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403197 YP_003166325.1 CDS CAP2UW1_1062 NC_013194.1 1212112 1214373 D KEGG: dar:Daro_2827 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1212112..1214373 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403198 YP_003166326.1 CDS CAP2UW1_1063 NC_013194.1 1214425 1216545 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1214425..1216545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403199 YP_003166327.1 CDS CAP2UW1_1064 NC_013194.1 1216756 1218267 D PFAM: Ppx/GppA phosphatase; KEGG: dar:Daro_1205 Ppx/GppA phosphatase; Ppx/GppA phosphatase 1216756..1218267 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403200 YP_003166328.1 CDS CAP2UW1_1065 NC_013194.1 1218275 1219387 D PFAM: protein of unknown function DUF140; KEGG: dar:Daro_1206 protein of unknown function DUF140; hypothetical protein 1218275..1219387 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403201 YP_003166329.1 CDS CAP2UW1_1066 NC_013194.1 1219384 1220181 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1207 ABC transporter related; ABC transporter 1219384..1220181 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403202 YP_003166330.1 CDS CAP2UW1_1067 NC_013194.1 1220184 1221119 D PFAM: Mammalian cell entry related domain protein; KEGG: dar:Daro_1208 mammalian cell entry related; Mammalian cell entry related domain-containing protein 1220184..1221119 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403203 YP_003166331.1 CDS CAP2UW1_1068 NC_013194.1 1221119 1221739 D KEGG: dar:Daro_1209 putative lipoprotein; putative lipoprotein 1221119..1221739 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403204 YP_003166332.1 CDS CAP2UW1_1069 NC_013194.1 1221775 1223412 D activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 1221775..1223412 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403205 YP_003166333.1 CDS CAP2UW1_1070 NC_013194.1 1223435 1224235 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1223435..1224235 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403206 YP_003166334.1 CDS CAP2UW1_1071 NC_013194.1 1224317 1225807 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mrd:Mrad2831_1243 diguanylate cyclase; diguanylate cyclase complement(1224317..1225807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403207 YP_003166335.1 CDS CAP2UW1_1072 NC_013194.1 1225829 1226455 R KEGG: rfr:Rfer_2035 hypothetical protein; hypothetical protein complement(1225829..1226455) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403208 YP_003166336.1 CDS CAP2UW1_1073 NC_013194.1 1226525 1227157 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pmy:Pmen_4338 methyltransferase type 11; type 11 methyltransferase complement(1226525..1227157) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403209 YP_003166337.1 CDS CAP2UW1_1074 NC_013194.1 1227536 1228606 D PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: dar:Daro_3347 TrkA-N; TrkA-N domain-containing protein 1227536..1228606 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403210 YP_003166338.1 CDS CAP2UW1_1075 NC_013194.1 1228634 1230112 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase; CHAD domain-containing protein 1228634..1230112 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403211 YP_003166339.1 CDS CAP2UW1_1076 NC_013194.1 1230168 1231556 R TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: hha:Hhal_1722 magnesium transporter; magnesium transporter complement(1230168..1231556) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403212 YP_003166340.1 CDS CAP2UW1_1077 NC_013194.1 1231902 1233617 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mxa:MXAN_6506 sulfate permease; sulfate transporter 1231902..1233617 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403213 YP_003166341.1 CDS CAP2UW1_1078 NC_013194.1 1233636 1234100 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tbd:Tbd_2407 RNA methyltransferase CspR; tRNA/rRNA methyltransferase SpoU 1233636..1234100 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403214 YP_003166342.1 CDS CAP2UW1_1079 NC_013194.1 1234119 1235195 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1234119..1235195) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403215 YP_003166343.1 CDS CAP2UW1_1080 NC_013194.1 1235209 1238634 R KEGG: dar:Daro_1965 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor complement(1235209..1238634) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403216 YP_003166344.1 CDS CAP2UW1_1081 NC_013194.1 1238822 1239583 R PFAM: Silent information regulator protein Sir2; KEGG: rxy:Rxyl_1341 silent information regulator protein Sir2; Silent information regulator protein Sir2 complement(1238822..1239583) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403217 YP_003166345.1 CDS CAP2UW1_1082 NC_013194.1 1239944 1240609 D PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1228 OmpA/MotB; OmpA/MotB domain-containing protein 1239944..1240609 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403218 YP_003166346.1 CDS CAP2UW1_1083 NC_013194.1 1240671 1242002 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 1240671..1242002 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403219 YP_003166347.1 CDS CAP2UW1_1084 NC_013194.1 1242079 1242756 D PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_1228 OmpA/MotB; OmpA/MotB domain-containing protein 1242079..1242756 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403220 YP_003166348.1 CDS CAP2UW1_1085 NC_013194.1 1242857 1243558 D KEGG: dar:Daro_1227 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase 1242857..1243558 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403221 YP_003166349.1 CDS CAP2UW1_1086 NC_013194.1 1243551 1244207 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bur:Bcep18194_A4150 2-phosphoglycolate phosphatase; phosphoglycolate phosphatase 1243551..1244207 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403222 YP_003166350.1 CDS CAP2UW1_1087 NC_013194.1 1244314 1244688 D PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: dar:Daro_0828 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 1244314..1244688 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403223 YP_003166351.1 CDS CAP2UW1_1088 NC_013194.1 1244777 1245487 D PFAM: protein of unknown function UPF0066; KEGG: cvi:CV_0659 hypothetical protein; hypothetical protein 1244777..1245487 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403224 YP_003166352.1 CDS CAP2UW1_1089 NC_013194.1 1245730 1246173 D KEGG: gme:Gmet_0233 hypothetical protein; hypothetical protein 1245730..1246173 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403225 YP_003166353.1 CDS CAP2UW1_1090 NC_013194.1 1246257 1246895 R KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase complement(1246257..1246895) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403226 YP_003166354.1 CDS CAP2UW1_1091 NC_013194.1 1246892 1248742 R PFAM: peptidase M61 domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: eba:ebA6315 conserved hypothetical protein, predicted peptidase; peptidase M61 domain-containing protein complement(1246892..1248742) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403227 YP_003166355.1 CDS CAP2UW1_1092 NC_013194.1 1249100 1250005 D PFAM: extracellular solute-binding protein family 3; KEGG: bmu:Bmul_2714 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1249100..1250005 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403228 YP_003166356.1 CDS CAP2UW1_1093 NC_013194.1 1250065 1251135 D KEGG: pfl:PFL_2099 glutaminase-asparaginase; TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; L-asparaginase 1250065..1251135 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403229 YP_003166357.1 CDS CAP2UW1_1094 NC_013194.1 1251206 1251943 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cti:RALTA_A0429 glutamate/aspartate transport protein; ABC superfamily, membrane component; polar amino acid ABC transporter permease 1251206..1251943 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403230 YP_003166358.1 CDS CAP2UW1_1095 NC_013194.1 1251945 1252625 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A0459 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter permease 1251945..1252625 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403231 YP_003166359.1 CDS CAP2UW1_1096 NC_013194.1 1252705 1253433 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cvi:CV_0117 ABC superfamily (glutamate/aspartate transporter), ATP-binding protein; ABC transporter 1252705..1253433 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403232 YP_003166360.1 CDS CAP2UW1_1097 NC_013194.1 1253455 1258122 D PFAM: NAD-glutamate dehydrogenase; KEGG: cvi:CV_3084 glutamate dehydrogenase; NAD-glutamate dehydrogenase 1253455..1258122 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403233 YP_003166361.1 CDS CAP2UW1_1098 NC_013194.1 1258302 1260815 D KEGG: hha:Hhal_0142 hypothetical protein; hypothetical protein 1258302..1260815 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403234 YP_003166362.1 CDS CAP2UW1_1099 NC_013194.1 1260808 1261098 D PFAM: heat shock protein DnaJ domain protein; KEGG: hha:Hhal_0143 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1260808..1261098 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403235 YP_003166363.1 CDS CAP2UW1_1100 NC_013194.1 1261095 1261811 D PFAM: GrpE protein; KEGG: hha:Hhal_0144 GrpE protein; GrpE protein 1261095..1261811 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403236 YP_003166364.1 CDS CAP2UW1_1101 NC_013194.1 1261808 1263574 D PFAM: Heat shock protein 70; KEGG: hha:Hhal_0145 heat shock protein 70; 2-alkenal reductase 1261808..1263574 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403237 YP_003166365.1 CDS CAP2UW1_1102 NC_013194.1 1263609 1263947 D KEGG: hha:Hhal_0146 hypothetical protein; hypothetical protein 1263609..1263947 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403238 YP_003166366.1 CDS CAP2UW1_1103 NC_013194.1 1264157 1266241 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Nitrate and nitrite sensing domain protein; KEGG: glo:Glov_1041 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1264157..1266241) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403239 YP_003166367.1 CDS CAP2UW1_1104 NC_013194.1 1266476 1266808 D KEGG: rxy:Rxyl_1080 redoxin; hypothetical protein 1266476..1266808 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403240 YP_003166368.1 CDS CAP2UW1_1105 NC_013194.1 1266877 1267518 D PFAM: protein of unknown function UPF0153; KEGG: bra:BRADO3784 conserved hypothetical protein; putative signal peptide; hypothetical protein 1266877..1267518 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403241 YP_003166369.1 CDS CAP2UW1_1106 NC_013194.1 1267577 1267879 R PFAM: branched-chain amino acid transport; KEGG: rec:RHECIAT_PC0000122 hypothetical protein; branched-chain amino acid transport complement(1267577..1267879) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403242 YP_003166370.1 CDS CAP2UW1_1107 NC_013194.1 1267876 1268577 R PFAM: AzlC family protein; KEGG: sme:SMc00559 hypothetical protein; AzlC family protein complement(1267876..1268577) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403243 YP_003166371.1 CDS CAP2UW1_1108 NC_013194.1 1268603 1270357 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ote:Oter_3786 integral membrane sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(1268603..1270357) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403244 YP_003166372.1 CDS CAP2UW1_1109 NC_013194.1 1270381 1271004 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dar:Daro_0172 Maf-like protein; maf protein complement(1270381..1271004) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403245 YP_003166373.1 CDS CAP2UW1_1110 NC_013194.1 1271005 1271475 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1271005..1271475) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403246 YP_003166374.1 CDS CAP2UW1_1111 NC_013194.1 1271472 1271849 R TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: eba:ebA3971 conserved hypothetical protein, predicted iojap-related protein family; iojap-like protein complement(1271472..1271849) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403247 YP_003166375.1 CDS CAP2UW1_1112 NC_013194.1 1271857 1272531 R KEGG: dar:Daro_0169 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(1271857..1272531) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403248 YP_003166376.1 CDS CAP2UW1_1113 NC_013194.1 1272524 1273300 R KEGG: dar:Daro_0168 putative transmembrane protein; hypothetical protein complement(1272524..1273300) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403249 YP_003166377.1 CDS CAP2UW1_1114 NC_013194.1 1273314 1274063 R KEGG: dar:Daro_0167 putative transmembrane protein; hypothetical protein complement(1273314..1274063) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403250 YP_003166378.1 CDS CAP2UW1_1115 NC_013194.1 1274102 1275067 R KEGG: azo:azo3604 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase complement(1274102..1275067) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403251 YP_003166379.1 CDS CAP2UW1_1116 NC_013194.1 1275119 1275460 R KEGG: dar:Daro_0165 hypothetical protein; hypothetical protein complement(1275119..1275460) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403252 YP_003166380.1 CDS CAP2UW1_1117 NC_013194.1 1275793 1278561 D KEGG: dar:Daro_0163 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 1275793..1278561 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403253 YP_003166381.1 CDS CAP2UW1_1119 NC_013194.1 1279356 1279970 D PFAM: protein of unknown function DUF820; KEGG: tex:Teth514_0292 protein of unknown function DUF820; hypothetical protein 1279356..1279970 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403255 YP_003166382.1 CDS CAP2UW1_1120 NC_013194.1 1280087 1280653 R KEGG: azo:azo2983 putative transposase; hypothetical protein complement(1280087..1280653) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403256 YP_003166383.1 CDS CAP2UW1_1121 NC_013194.1 1281125 1281418 D hypothetical protein 1281125..1281418 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403257 YP_003166384.1 CDS CAP2UW1_1122 NC_013194.1 1281806 1282870 D PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:ebA65 hypothetical protein; filamentation induced by cAMP protein Fic 1281806..1282870 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403258 YP_003166385.1 CDS CAP2UW1_1124 NC_013194.1 1283467 1285188 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: sfu:Sfum_1398 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1283467..1285188 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403260 YP_003166386.1 CDS CAP2UW1_1125 NC_013194.1 1285280 1285810 D KEGG: reu:Reut_A1129 hypothetical protein; hypothetical protein 1285280..1285810 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403261 YP_003166387.1 CDS CAP2UW1_1126 NC_013194.1 1285849 1286637 R KEGG: afw:Anae109_3727 hypothetical protein; hypothetical protein complement(1285849..1286637) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403262 YP_003166388.1 CDS CAP2UW1_1127 NC_013194.1 1286642 1287838 R KEGG: pol:Bpro_5556 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase-like; hypothetical protein complement(1286642..1287838) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403263 YP_003166389.1 CDS CAP2UW1_1128 NC_013194.1 1287835 1290237 R PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: reu:Reut_B4875 peptidoglycan glycosyltransferase; glycosyl transferase family 51 complement(1287835..1290237) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403264 YP_003166390.1 CDS CAP2UW1_1129 NC_013194.1 1290335 1290496 D hypothetical protein 1290335..1290496 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403265 YP_003166391.1 CDS CAP2UW1_1130 NC_013194.1 1290530 1291099 D KEGG: rso:RS02998 putative lipoprotein transmembrane; putative lipoprotein transmembrane 1290530..1291099 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403266 YP_003166392.1 CDS CAP2UW1_1132 NC_013194.1 1292108 1294234 D hypothetical protein 1292108..1294234 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403268 YP_003166393.1 CDS CAP2UW1_1133 NC_013194.1 1295314 1299363 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; peptidase C14 caspase catalytic subunit p20; KEGG: dar:Daro_2106 filamentous haemagglutinin, N-terminal; filamentous hemagglutinin family outer membrane protein complement(1295314..1299363) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403269 YP_003166394.1 CDS CAP2UW1_1134 NC_013194.1 1299663 1301054 D PFAM: Metal-dependent hydrolase HDOD; KEGG: tbd:Tbd_0056 predicted signal transduction protein containing EAL and modified HD-GYP domains; putative signal transduction protein 1299663..1301054 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403270 YP_003166395.1 CDS CAP2UW1_1135 NC_013194.1 1301051 1301176 R hypothetical protein complement(1301051..1301176) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403271 YP_003166396.1 CDS CAP2UW1_1136 NC_013194.1 1301173 1303161 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: azo:azo0688 probable propionyl-CoA carboxylase alpha chain; acetyl-CoA carboxylase, biotin carboxylase complement(1301173..1303161) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403272 YP_003166397.1 CDS CAP2UW1_1137 NC_013194.1 1303181 1304713 R PFAM: carboxyl transferase; KEGG: azo:azo0687 probable propionyl-coa carboxylase beta subunit; carboxyl transferase complement(1303181..1304713) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403273 YP_003166398.1 CDS CAP2UW1_1138 NC_013194.1 1304787 1305785 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(1304787..1305785) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403274 YP_003166399.1 CDS CAP2UW1_1139 NC_013194.1 1305819 1307993 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(1305819..1307993) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403275 YP_003166400.1 CDS CAP2UW1_1140 NC_013194.1 1308190 1308861 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dar:Daro_4007 transcriptional regulator, GntR family; GntR family transcriptional regulator 1308190..1308861 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403276 YP_003166401.1 CDS CAP2UW1_1141 NC_013194.1 1308858 1309637 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dar:Daro_4012 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase 1308858..1309637 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403277 YP_003166402.1 CDS CAP2UW1_1142 NC_013194.1 1309647 1310447 R PFAM: protein of unknown function DUF81; KEGG: eba:ebA1817 hypothetical protein; hypothetical protein complement(1309647..1310447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403278 YP_003166403.1 CDS CAP2UW1_1143 NC_013194.1 1310583 1311485 R PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1310583..1311485) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403279 YP_003166404.1 CDS CAP2UW1_1144 NC_013194.1 1311482 1312549 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ppg:PputGB1_1380 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1311482..1312549) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403280 YP_003166405.1 CDS CAP2UW1_1145 NC_013194.1 1312628 1314049 R KEGG: she:Shewmr4_1328 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1312628..1314049) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403281 YP_003166406.1 CDS CAP2UW1_1146 NC_013194.1 1314180 1315133 D TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3928 lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase I 1314180..1315133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403282 YP_003166407.1 CDS CAP2UW1_1147 NC_013194.1 1315133 1316407 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1315133..1316407 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403283 YP_003166408.1 CDS CAP2UW1_1148 NC_013194.1 1316382 1317725 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_3926 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein complement(1316382..1317725) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403284 YP_003166409.1 CDS CAP2UW1_1149 NC_013194.1 1317887 1318552 R PFAM: putative RNA methylase; protein-L-isoaspartate(D-aspartate) O-methyltransferase; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_3924 protein-L-isoaspartate(D-aspartate) O-methyltransferase:O-methyltransferase, family 3; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1317887..1318552) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403285 YP_003166410.1 CDS CAP2UW1_1150 NC_013194.1 1318787 1319053 R PFAM: ribosomal protein S20; KEGG: mfa:Mfla_2211 30S ribosomal protein S20; 30S ribosomal protein S20 complement(1318787..1319053) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403286 YP_003166411.1 CDS CAP2UW1_1151 NC_013194.1 1319206 1320396 R PFAM: porin Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin); porin complement(1319206..1320396) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403287 YP_003166412.1 CDS CAP2UW1_1152 NC_013194.1 1320792 1322063 R PFAM: porin Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin); porin complement(1320792..1322063) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403288 YP_003166413.1 CDS CAP2UW1_1153 NC_013194.1 1322440 1323228 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: eba:ebA4201 indole-3-glycerol phosphate synthase; Indole-3-glycerol-phosphate synthase complement(1322440..1323228) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403289 YP_003166414.1 CDS CAP2UW1_1154 NC_013194.1 1323256 1324281 R KEGG: lch:Lcho_3877 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(1323256..1324281) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403290 YP_003166415.1 CDS CAP2UW1_1155 NC_013194.1 1324278 1324850 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: dar:Daro_3477 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase complement(1324278..1324850) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403291 YP_003166416.1 CDS CAP2UW1_1157 NC_013194.1 1325378 1325893 D KEGG: mms:mma_1918 hypothetical protein; hypothetical protein 1325378..1325893 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403293 YP_003166417.1 CDS CAP2UW1_1158 NC_013194.1 1326135 1326707 R PFAM: Phosphoglycerate mutase; KEGG: reh:H16_A0399 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(1326135..1326707) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403294 YP_003166418.1 CDS CAP2UW1_1159 NC_013194.1 1326734 1326976 R KEGG: dar:Daro_1131 hypothetical protein; hypothetical protein complement(1326734..1326976) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403295 YP_003166419.1 CDS CAP2UW1_1160 NC_013194.1 1327009 1327341 R KEGG: psb:Psyr_2639 hypothetical protein; hypothetical protein complement(1327009..1327341) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403296 YP_003166420.1 CDS CAP2UW1_1162 NC_013194.1 1327837 1329045 D PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF399; KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF; hypothetical protein 1327837..1329045 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403298 YP_003166421.1 CDS CAP2UW1_1163 NC_013194.1 1329042 1331102 D KEGG: eba:ebA2774 putative aminopeptidase; putative aminopeptidase 1329042..1331102 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403299 YP_003166422.1 CDS CAP2UW1_1164 NC_013194.1 1331281 1331682 D KEGG: rfr:Rfer_3005 hypothetical protein; hypothetical protein 1331281..1331682 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403300 YP_003166423.1 CDS CAP2UW1_1165 NC_013194.1 1331698 1334070 D KEGG: rfr:Rfer_3006 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1331698..1334070 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403301 YP_003166424.1 CDS CAP2UW1_1166 NC_013194.1 1334138 1334557 D KEGG: eba:ebA6372 hypothetical protein; hypothetical protein 1334138..1334557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403302 YP_003166425.1 CDS CAP2UW1_1167 NC_013194.1 1334733 1335167 D KEGG: psa:PST_0577 hypothetical protein; hypothetical protein 1334733..1335167 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403303 YP_003166426.1 CDS CAP2UW1_1168 NC_013194.1 1335173 1336201 R KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein complement(1335173..1336201) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403304 YP_003166427.1 CDS CAP2UW1_1169 NC_013194.1 1336364 1336867 D KEGG: nmu:Nmul_A1168 hypothetical protein; hypothetical protein 1336364..1336867 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403305 YP_003166428.1 CDS CAP2UW1_1170 NC_013194.1 1336872 1337546 D KEGG: pol:Bpro_4278 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; protein-L-isoaspartate O-methyltransferase 1336872..1337546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403306 YP_003166429.1 CDS CAP2UW1_1171 NC_013194.1 1337634 1339106 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(1337634..1339106) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403307 YP_003166430.1 CDS CAP2UW1_1172 NC_013194.1 1339276 1339959 R TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_2229 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(1339276..1339959) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403308 YP_003166431.1 CDS CAP2UW1_1173 NC_013194.1 1339959 1340648 R PFAM: ribulose-phosphate 3-epimerase; KEGG: azo:azo3327 putative ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase complement(1339959..1340648) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403309 YP_003166432.1 CDS CAP2UW1_1174 NC_013194.1 1340795 1341178 D PFAM: ApaG domain protein; KEGG: tbd:Tbd_2231 ApaG; ApaG domain-containing protein 1340795..1341178 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403310 YP_003166433.1 CDS CAP2UW1_1175 NC_013194.1 1341189 1341782 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_3485 phosphatidylethanolamine N-methyltransferase / phosphatidyl-N-methylethanolamine N-methyltransferase; type 11 methyltransferase 1341189..1341782 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403311 YP_003166434.1 CDS argJ NC_013194.1 1341779 1343017 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein complement(1341779..1343017) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403312 YP_003166435.1 CDS CAP2UW1_1177 NC_013194.1 1343139 1345859 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1343139..1345859) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403313 YP_003166436.1 CDS CAP2UW1_1178 NC_013194.1 1346143 1346742 D PFAM: CBS domain containing protein; KEGG: eba:ebA948 hypothetical protein; putative signal transduction protein with CBS domains 1346143..1346742 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403314 YP_003166437.1 CDS CAP2UW1_1179 NC_013194.1 1346774 1348339 R PFAM: gamma-glutamyltranspeptidase; KEGG: syn:slr1269 gamma-glutamyltranspeptidase precursor; Gamma-glutamyltransferase complement(1346774..1348339) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403315 YP_003166438.1 CDS CAP2UW1_1180 NC_013194.1 1348433 1349530 R PFAM: CheB methylesterase; response regulator receiver; KEGG: dar:Daro_1148 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase complement(1348433..1349530) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403316 YP_003166439.1 CDS CAP2UW1_1181 NC_013194.1 1350025 1351467 R KEGG: azo:azo3674 probable serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(1350025..1351467) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403317 YP_003166440.1 CDS CAP2UW1_1182 NC_013194.1 1351591 1352907 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: azo:azo3673 two-component system histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1351591..1352907) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403318 YP_003166441.1 CDS CAP2UW1_1183 NC_013194.1 1352904 1353566 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: azo:azo3672 DNA-binding response regulator; winged helix family two component transcriptional regulator complement(1352904..1353566) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403319 YP_003166442.1 CDS CAP2UW1_1184 NC_013194.1 1353942 1354901 D KEGG: pna:Pnap_3560 zinc finger, RanBP2-type; zinc finger, RanBP2-type 1353942..1354901 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403320 YP_003166443.1 CDS CAP2UW1_1185 NC_013194.1 1354903 1355964 D KEGG: pna:Pnap_3559 TRAP-type uncharacterized transport system protein, periplasmic component; TRAP-type transport system protein periplasmic protein 1354903..1355964 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403321 YP_003166444.1 CDS CAP2UW1_1186 NC_013194.1 1356109 1357311 D PFAM: aminotransferase class I and II; KEGG: glo:Glov_2977 aminotransferase class I and II; class I/II aminotransferase 1356109..1357311 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403322 YP_003166445.1 CDS CAP2UW1_1187 NC_013194.1 1357406 1358299 R KEGG: dar:Daro_3166 hypothetical protein; hypothetical protein complement(1357406..1358299) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403323 YP_003166446.1 CDS CAP2UW1_1188 NC_013194.1 1358296 1358694 R hypothetical protein complement(1358296..1358694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403324 YP_003166447.1 CDS CAP2UW1_1190 NC_013194.1 1359500 1360768 D TIGRFAM: urea ABC transporter, urea binding protein; KEGG: dar:Daro_1443 twin-arginine translocation pathway signal; urea ABC transporter urea-binding protein 1359500..1360768 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403326 YP_003166448.1 CDS CAP2UW1_1191 NC_013194.1 1360824 1362422 D TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: dar:Daro_1437 inner-membrane translocator; urea ABC transporter permease UrtB 1360824..1362422 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403327 YP_003166449.1 CDS CAP2UW1_1192 NC_013194.1 1362439 1363605 D TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: dar:Daro_1436 inner-membrane translocator; urea ABC transporter permease UrtC 1362439..1363605 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403328 YP_003166450.1 CDS CAP2UW1_1193 NC_013194.1 1363602 1364444 D TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: dar:Daro_1435 ABC transporter related; urea ABC transporter ATP-binding protein UrtD 1363602..1364444 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403329 YP_003166451.1 CDS CAP2UW1_1194 NC_013194.1 1364452 1365144 D KEGG: dar:Daro_1434 ABC transporter related; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase; urea ABC transporter ATP-binding protein UrtE 1364452..1365144 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403330 YP_003166452.1 CDS CAP2UW1_1195 NC_013194.1 1365403 1366827 D KEGG: cts:Ctha_1392 hypothetical protein; hypothetical protein 1365403..1366827 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403331 YP_003166453.1 CDS CAP2UW1_1196 NC_013194.1 1366814 1370446 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cts:Ctha_1311 TPR repeat-containing protein; hypothetical protein 1366814..1370446 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403332 YP_003166454.1 CDS CAP2UW1_1197 NC_013194.1 1370561 1370908 D hypothetical protein 1370561..1370908 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403333 YP_003166455.1 CDS CAP2UW1_1198 NC_013194.1 1371148 1375398 R KEGG: ana:alr9018 hypothetical protein; NTPase (NACHT family)-like protein complement(1371148..1375398) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403334 YP_003166456.1 CDS CAP2UW1_1199 NC_013194.1 1375508 1376230 D KEGG: bmn:BMA10247_A0105 hypothetical protein; hypothetical protein 1375508..1376230 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403335 YP_003166457.1 CDS CAP2UW1_1200 NC_013194.1 1376239 1377105 D PFAM: Urease accessory protein UreD; KEGG: dar:Daro_1430 urease accessory protein UreD; Urease accessory protein UreD 1376239..1377105 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403336 YP_003166458.1 CDS CAP2UW1_1201 NC_013194.1 1377124 1377426 D KEGG: npu:Npun_F0823 urease, gamma subunit UreA; TIGRFAM: urease, gamma subunit; PFAM: Urease gamma subunit region; urease subunit gamma 1377124..1377426 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403337 YP_003166459.1 CDS CAP2UW1_1202 NC_013194.1 1377438 1377746 D KEGG: dar:Daro_1428 urease, beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease beta subunit; urease subunit beta 1377438..1377746 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403338 YP_003166460.1 CDS ureC NC_013194.1 1377743 1379458 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 1377743..1379458 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403339 YP_003166461.1 CDS CAP2UW1_1204 NC_013194.1 1379466 1380017 D PFAM: UreE urease accessory domain protein; KEGG: azo:azo3503 probable urease accessory protein UreE; UreE urease accessory domain-containing protein 1379466..1380017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403340 YP_003166462.1 CDS CAP2UW1_1205 NC_013194.1 1380014 1380685 D PFAM: Urease accessory protein UreF; KEGG: azo:azo3502 probable urease accessory protein UreF; Urease accessory protein UreF 1380014..1380685 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403341 YP_003166463.1 CDS CAP2UW1_1206 NC_013194.1 1380682 1381344 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; KEGG: azo:azo3501 urease accessory protein UreG; urease accessory protein UreG 1380682..1381344 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403342 YP_003166464.1 CDS CAP2UW1_1207 NC_013194.1 1381309 1381710 R KEGG: ddi:DDB_0233354 CCHC-type Zn finger-containing protein; hypothetical protein complement(1381309..1381710) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403343 YP_003166465.1 CDS CAP2UW1_1208 NC_013194.1 1382062 1382619 D PFAM: phosphoribosyltransferase; KEGG: tbd:Tbd_0103 transcriptional regulator PyrR, putative; phosphoribosyltransferase 1382062..1382619 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403344 YP_003166466.1 CDS CAP2UW1_1209 NC_013194.1 1382924 1384840 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: eba:ebA871 threonyl-tRNA synthetase; threonyl-tRNA synthetase 1382924..1384840 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403345 YP_003166467.1 CDS CAP2UW1_1210 NC_013194.1 1384837 1385388 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: eba:ebA870 translation initiation factor IF-3; translation initiation factor IF-3 1384837..1385388 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403346 YP_003166468.1 CDS CAP2UW1_1211 NC_013194.1 1385488 1385685 D PFAM: ribosomal protein L35; KEGG: azo:azo1081 50S ribosomal protein L35; 50S ribosomal protein L35 1385488..1385685 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403347 YP_003166469.1 CDS CAP2UW1_1212 NC_013194.1 1385697 1386056 D TIGRFAM: ribosomal protein L20; KEGG: dar:Daro_2674 50S ribosomal protein L20; 50S ribosomal protein L20 1385697..1386056 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403348 YP_003166470.1 CDS pheS NC_013194.1 1386107 1387153 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1386107..1387153 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403349 YP_003166471.1 CDS pheT NC_013194.1 1387182 1389557 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1387182..1389557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403350 YP_003166472.1 CDS ihfA NC_013194.1 1389570 1389872 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1389570..1389872 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403351 YP_003166473.1 CDS CAP2UW1_1216 NC_013194.1 1389856 1390227 D PFAM: regulatory protein MerR; KEGG: dar:Daro_2670 regulatory protein, MerR; MerR family transcriptional regulator 1389856..1390227 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403352 YP_003166474.1 CDS CAP2UW1_1217 NC_013194.1 1390588 1393632 D KEGG: npu:Npun_F5467 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1390588..1393632 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403354 YP_003166475.1 CDS CAP2UW1_1218 NC_013194.1 1393995 1394309 D PFAM: protein of unknown function DUF485; KEGG: lch:Lcho_2500 protein of unknown function DUF485; hypothetical protein 1393995..1394309 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403355 YP_003166476.1 CDS CAP2UW1_1219 NC_013194.1 1394306 1395994 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dar:Daro_0428 Na+/solute symporter; SSS sodium solute transporter superfamily protein 1394306..1395994 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403356 YP_003166477.1 CDS CAP2UW1_1220 NC_013194.1 1396466 1397569 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1396466..1397569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403357 YP_003166478.1 CDS CAP2UW1_1221 NC_013194.1 1397653 1397904 D KEGG: dar:Daro_0859 hypothetical protein; hypothetical protein 1397653..1397904 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403358 YP_003166479.1 CDS CAP2UW1_1222 NC_013194.1 1397950 1399110 D PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: dar:Daro_0860 nucleoside:H+ symporter:major facilitator superfamily MFS_1; major facilitator superfamily protein 1397950..1399110 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403359 YP_003166480.1 CDS CAP2UW1_1223 NC_013194.1 1399276 1400340 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1399276..1400340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403360 YP_003166481.1 CDS CAP2UW1_1224 NC_013194.1 1400369 1401499 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1400369..1401499 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403361 YP_003166482.1 CDS CAP2UW1_1225 NC_013194.1 1401642 1404749 D KEGG: dar:Daro_0866 hypothetical protein; hypothetical protein 1401642..1404749 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403362 YP_003166483.1 CDS CAP2UW1_1226 NC_013194.1 1404804 1406027 D PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein; transposase family protein 1404804..1406027 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403363 YP_003166484.1 CDS CAP2UW1_1227 NC_013194.1 1406159 1406758 D KEGG: azo:azo1044 hypothetical protein; hypothetical protein 1406159..1406758 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403364 YP_003166485.1 CDS truA NC_013194.1 1406762 1407562 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1406762..1407562 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403365 YP_003166486.1 CDS CAP2UW1_1229 NC_013194.1 1407552 1408193 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dar:Daro_0869 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 1407552..1408193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403366 YP_003166487.1 CDS CAP2UW1_1230 NC_013194.1 1408373 1409578 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1408373..1409578 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403367 YP_003166488.1 CDS CAP2UW1_1231 NC_013194.1 1409581 1410399 D KEGG: dar:Daro_0871 tryptophan synthase, alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1409581..1410399 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403368 YP_003166489.1 CDS CAP2UW1_1232 NC_013194.1 1410396 1411268 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: dar:Daro_0872 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1410396..1411268 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403369 YP_003166490.1 CDS CAP2UW1_1233 NC_013194.1 1411279 1412619 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_0873 folylpolyglutamate synthetase; FolC bifunctional protein 1411279..1412619 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403370 YP_003166491.1 CDS CAP2UW1_1234 NC_013194.1 1412647 1413660 D PFAM: Sporulation domain protein; KEGG: dar:Daro_0874 sporulation related; Sporulation domain-containing protein 1412647..1413660 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403371 YP_003166492.1 CDS CAP2UW1_1235 NC_013194.1 1413657 1414145 D PFAM: Colicin V production protein; KEGG: dar:Daro_0875 colicin V production protein; Colicin V production protein 1413657..1414145 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403372 YP_003166493.1 CDS CAP2UW1_1236 NC_013194.1 1414155 1415681 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1414155..1415681 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403373 YP_003166494.1 CDS CAP2UW1_1237 NC_013194.1 1415687 1416868 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1415687..1416868 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403374 YP_003166495.1 CDS CAP2UW1_1238 NC_013194.1 1416865 1417179 R KEGG: eba:ebD128 hypothetical protein; hypothetical protein complement(1416865..1417179) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403375 YP_003166496.1 CDS leuD NC_013194.1 1417161 1417802 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(1417161..1417802) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403376 YP_003166497.1 CDS CAP2UW1_1240 NC_013194.1 1417906 1419336 R KEGG: tbd:Tbd_1922 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit complement(1417906..1419336) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403377 YP_003166498.1 CDS CAP2UW1_1241 NC_013194.1 1419401 1420966 R KEGG: hau:Haur_4444 2-isopropylmalate synthase/homocitrate synthase family protein; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; putative alpha-isopropylmalate/homocitrate synthase family transferase complement(1419401..1420966) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403378 YP_003166499.1 CDS CAP2UW1_1242 NC_013194.1 1421235 1422251 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: eba:ebA5998 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (FirA protein); UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1421235..1422251 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403379 YP_003166500.1 CDS CAP2UW1_1243 NC_013194.1 1422761 1426123 D PFAM: biotin/lipoyl attachment domain-containing protein; dehydrogenase E1 component; Transketolase central region; Transketolase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: plu:plu1883 hypothetical protein; transketolase domain-containing protein 1422761..1426123 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403380 YP_003166501.1 CDS CAP2UW1_1244 NC_013194.1 1426297 1427082 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cvi:CV_1553 probable enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase complement(1426297..1427082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403381 YP_003166502.1 CDS CAP2UW1_1245 NC_013194.1 1427239 1428603 R TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dar:Daro_3531 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(1427239..1428603) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403382 YP_003166503.1 CDS CAP2UW1_1246 NC_013194.1 1428767 1429612 R PFAM: CBS domain containing protein; transporter-associated region; KEGG: dar:Daro_3530 CBS:transporter-associated region; CBS domain-containing protein complement(1428767..1429612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403383 YP_003166504.1 CDS CAP2UW1_1247 NC_013194.1 1429703 1430137 R PFAM: protein of unknown function UPF0054; KEGG: dar:Daro_3529 hypothetical protein; hypothetical protein complement(1429703..1430137) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403384 YP_003166505.1 CDS CAP2UW1_1248 NC_013194.1 1430154 1431188 R PFAM: PhoH family protein; KEGG: eba:ebA1337 PhoH-like protein; PhoH family protein complement(1430154..1431188) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403385 YP_003166506.1 CDS CAP2UW1_1249 NC_013194.1 1431185 1432552 R KEGG: dar:Daro_3527 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB complement(1431185..1432552) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403386 YP_003166507.1 CDS CAP2UW1_1250 NC_013194.1 1432565 1432921 R KEGG: ajs:Ajs_3624 hypothetical protein; hypothetical protein complement(1432565..1432921) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403387 YP_003166508.1 CDS CAP2UW1_1252 NC_013194.1 1433861 1434598 R KEGG: amr:AM1_0973 hypothetical protein; hypothetical protein complement(1433861..1434598) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403390 YP_003166509.1 CDS CAP2UW1_1253 NC_013194.1 1434614 1435000 R KEGG: rme:Rmet_4200 hypothetical protein; hypothetical protein complement(1434614..1435000) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403391 YP_003166510.1 CDS CAP2UW1_1254 NC_013194.1 1435102 1435545 R PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1189 17 kDa surface antigen; 17 kDa surface antigen complement(1435102..1435545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403392 YP_003166511.1 CDS CAP2UW1_1255 NC_013194.1 1435908 1436162 R KEGG: met:M446_1571 hypothetical protein; hypothetical protein complement(1435908..1436162) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403393 YP_003166512.1 CDS CAP2UW1_1256 NC_013194.1 1436266 1436514 R KEGG: bph:Bphy_6348 hypothetical protein; hypothetical protein complement(1436266..1436514) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403394 YP_003166513.1 CDS CAP2UW1_1257 NC_013194.1 1436535 1436630 D hypothetical protein 1436535..1436630 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403395 YP_003166514.1 CDS CAP2UW1_1258 NC_013194.1 1436954 1437238 D KEGG: bph:Bphy_4531 hypothetical protein; hypothetical protein 1436954..1437238 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403396 YP_003166515.1 CDS CAP2UW1_1259 NC_013194.1 1437285 1438202 D KEGG: bph:Bphy_4532 periplasmic protein-like protein; hypothetical protein 1437285..1438202 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403397 YP_003166516.1 CDS CAP2UW1_1260 NC_013194.1 1438215 1438907 D KEGG: bph:Bphy_4533 hypothetical protein; hypothetical protein 1438215..1438907 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403398 YP_003166517.1 CDS CAP2UW1_1261 NC_013194.1 1439012 1441657 R KEGG: xau:Xaut_2318 carbohydrate-binding family V/XII; carbohydrate-binding family V/XII complement(1439012..1441657) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403399 YP_003166518.1 CDS CAP2UW1_1262 NC_013194.1 1441944 1442513 D PFAM: OmpA/MotB domain protein; KEGG: mca:MCA1819 OmpA domain protein; OmpA/MotB domain-containing protein 1441944..1442513 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403400 YP_003166519.1 CDS CAP2UW1_1263 NC_013194.1 1442576 1444006 R PFAM: phospholipase D/Transphosphatidylase; KEGG: stm:STM1739 cardiolipin synthetase; phospholipase D/transphosphatidylase complement(1442576..1444006) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403401 YP_003166520.1 CDS CAP2UW1_1264 NC_013194.1 1444255 1444917 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: chu:CHU_1407 conserved hypothetical protein; possible MarC family, integral membrane protein; multiple antibiotic resistance (MarC)-like protein 1444255..1444917 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403402 YP_003166521.1 CDS CAP2UW1_1265 NC_013194.1 1445068 1445928 D KEGG: rme:Rmet_1904 hypothetical protein; hypothetical protein 1445068..1445928 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403403 YP_003166522.1 CDS CAP2UW1_1266 NC_013194.1 1445973 1448522 D PFAM: sulfatase; KEGG: dsh:Dshi_0936 sulfatase; sulfatase 1445973..1448522 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403404 YP_003166523.1 CDS CAP2UW1_1267 NC_013194.1 1448681 1449052 D KEGG: aba:Acid345_4739 hypothetical protein; hypothetical protein 1448681..1449052 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403405 YP_003166524.1 CDS CAP2UW1_1268 NC_013194.1 1449059 1449325 D hypothetical protein 1449059..1449325 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403406 YP_003166525.1 CDS CAP2UW1_1269 NC_013194.1 1449430 1449870 R KEGG: xau:Xaut_3124 ion transport 2 domain protein; ion transport 2 domain-containing protein complement(1449430..1449870) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403407 YP_003166526.1 CDS CAP2UW1_1270 NC_013194.1 1449994 1450716 R KEGG: aag:AaeL_AAEL012894 sugar transporter; hypothetical protein complement(1449994..1450716) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403408 YP_003166527.1 CDS CAP2UW1_1271 NC_013194.1 1450833 1451411 R KEGG: cts:Ctha_2607 abortive infection protein; hypothetical protein complement(1450833..1451411) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403409 YP_003166528.1 CDS CAP2UW1_1272 NC_013194.1 1451850 1452857 D KEGG: pnu:Pnuc_0885 hypothetical protein; hypothetical protein 1451850..1452857 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403410 YP_003166529.1 CDS CAP2UW1_1273 NC_013194.1 1452900 1453031 D PFAM: Cbb3-type cytochrome oxidase component; KEGG: vha:VIBHAR_02301 cytochrome c oxidase, subunit CcoQ; Cbb3-type cytochrome oxidase component 1452900..1453031 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403411 YP_003166530.1 CDS CAP2UW1_1274 NC_013194.1 1453281 1454057 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_2758 demethylmenaquinone methyltransferase; type 11 methyltransferase 1453281..1454057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403412 YP_003166531.1 CDS CAP2UW1_1275 NC_013194.1 1454175 1454624 R PFAM: regulatory protein AsnC/Lrp family; regulatory protein ArsR; KEGG: bac:BamMC406_4349 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1454175..1454624) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403413 YP_003166532.1 CDS CAP2UW1_1276 NC_013194.1 1454760 1455377 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ote:Oter_4033 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA 1454760..1455377 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403414 YP_003166533.1 CDS CAP2UW1_1277 NC_013194.1 1455599 1456396 D PFAM: Lytic transglycosylase catalytic; KEGG: reu:Reut_A2357 lytic transglycosylase, catalytic; lytic transglycosylase subunit 1455599..1456396 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403415 YP_003166534.1 CDS CAP2UW1_1278 NC_013194.1 1456393 1456518 D hypothetical protein 1456393..1456518 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403416 YP_003166535.1 CDS CAP2UW1_1280 NC_013194.1 1457738 1458634 D PFAM: protein of unknown function DUF344; KEGG: dps:DP0981 hypothetical protein; hypothetical protein 1457738..1458634 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403418 YP_003166536.1 CDS CAP2UW1_1281 NC_013194.1 1458756 1460504 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mba:Mbar_A2518 sulfate transporter; sulfate transporter 1458756..1460504 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403419 YP_003166537.1 CDS CAP2UW1_1282 NC_013194.1 1460522 1461055 D PFAM: membrane protein of uknown function UCP014873; KEGG: lip:LI0059 hypothetical protein; membrane protein 1460522..1461055 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403420 YP_003166538.1 CDS CAP2UW1_1283 NC_013194.1 1461103 1461861 D KEGG: pne:Pnec_0591 hypothetical protein; hypothetical protein 1461103..1461861 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403421 YP_003166539.1 CDS CAP2UW1_1284 NC_013194.1 1462103 1462864 D KEGG: dvl:Dvul_0140 lipoprotein, putative; lipoprotein 1462103..1462864 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403422 YP_003166540.1 CDS CAP2UW1_1285 NC_013194.1 1463182 1465422 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpd:RPD_2526 tetratricopeptide TPR_2; hypothetical protein 1463182..1465422 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403423 YP_003166541.1 CDS CAP2UW1_1286 NC_013194.1 1465493 1465888 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ade:Adeh_0492 hemerythrin-like, metal-binding protein; hemerythrin-like metal-binding protein 1465493..1465888 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403424 YP_003166542.1 CDS CAP2UW1_1289 NC_013194.1 1467109 1467306 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(1467109..1467306) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403427 YP_003166543.1 CDS CAP2UW1_1290 NC_013194.1 1467303 1468097 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(1467303..1468097) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403428 YP_003166544.1 CDS CAP2UW1_1291 NC_013194.1 1468100 1469422 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit complement(1468100..1469422) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403429 YP_003166545.1 CDS CAP2UW1_1292 NC_013194.1 1469552 1470076 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(1469552..1470076) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403430 YP_003166546.1 CDS CAP2UW1_1293 NC_013194.1 1470801 1470992 R KEGG: pmt:PMT0221 NHL repeat; NHL repeat-containing protein complement(1470801..1470992) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403431 YP_003166547.1 CDS CAP2UW1_1294 NC_013194.1 1471175 1472185 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1471175..1472185) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403432 YP_003166548.1 CDS CAP2UW1_1295 NC_013194.1 1472328 1472516 R KEGG: cak:Caul_3677 prevent-host-death family protein; hypothetical protein complement(1472328..1472516) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403433 YP_003166549.1 CDS CAP2UW1_1296 NC_013194.1 1472651 1473139 R PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family; MarR family transcriptional regulator complement(1472651..1473139) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403434 YP_003166550.1 CDS CAP2UW1_1297 NC_013194.1 1473225 1473383 R hypothetical protein complement(1473225..1473383) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403435 YP_003166551.1 CDS CAP2UW1_1298 NC_013194.1 1473509 1475362 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1473509..1475362 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403436 YP_003166552.1 CDS CAP2UW1_1299 NC_013194.1 1475468 1476418 D TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: met:M446_2161 malate dehydrogenase, NAD-dependent; malate dehydrogenase, NAD-dependent 1475468..1476418 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403437 YP_003166553.1 CDS CAP2UW1_1300 NC_013194.1 1476596 1477261 D PFAM: carbonic anhydrase; KEGG: asa:ASA_3957 carbonic anhydrase; carbonate dehydratase 1476596..1477261 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403438 YP_003166554.1 CDS CAP2UW1_1301 NC_013194.1 1477310 1477966 D PFAM: Phosphoglycerate mutase; KEGG: rpd:RPD_0651 phosphoglycerate mutase; phosphoglycerate mutase 1477310..1477966 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403439 YP_003166555.1 CDS CAP2UW1_1302 NC_013194.1 1478353 1478790 R PFAM: RES domain protein; KEGG: neu:NE2107 hypothetical protein; RES domain-containing protein complement(1478353..1478790) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403440 YP_003166556.1 CDS CAP2UW1_1303 NC_013194.1 1478790 1479362 R PFAM: conserved hypothetical protein; KEGG: neu:NE2106 hypothetical protein; hypothetical protein complement(1478790..1479362) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403441 YP_003166557.1 CDS CAP2UW1_1304 NC_013194.1 1479469 1480881 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sun:SUN_1992 outer membrane efflux lipoprotein; NodT family RND efflux system, outer membrane lipoprotein complement(1479469..1480881) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403442 YP_003166558.1 CDS CAP2UW1_1305 NC_013194.1 1480881 1482035 R PFAM: secretion protein HlyD family protein; KEGG: rpd:RPD_2518 secretion protein HlyD; secretion protein HlyD family protein complement(1480881..1482035) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403443 YP_003166559.1 CDS CAP2UW1_1306 NC_013194.1 1482032 1482457 R KEGG: rpd:RPD_2517 hypothetical protein; hypothetical protein complement(1482032..1482457) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403444 YP_003166560.1 CDS CAP2UW1_1307 NC_013194.1 1482473 1482604 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: vha:VIBHAR_02301 cytochrome c oxidase, subunit CcoQ; Cbb3-type cytochrome oxidase component complement(1482473..1482604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403445 YP_003166561.1 CDS CAP2UW1_1308 NC_013194.1 1482620 1484215 R PFAM: sulfatase; KEGG: rba:RB9498 arylsulfatase; sulfatase complement(1482620..1484215) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403446 YP_003166562.1 CDS CAP2UW1_1309 NC_013194.1 1484267 1485301 R KEGG: nha:Nham_2981 NapD-like protein; NapD-like protein complement(1484267..1485301) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403447 YP_003166563.1 CDS CAP2UW1_1310 NC_013194.1 1485422 1487146 R PFAM: sulfatase; KEGG: sus:Acid_4083 sulfatase; sulfatase complement(1485422..1487146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403448 YP_003166564.1 CDS CAP2UW1_1311 NC_013194.1 1487293 1487928 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sme:SMa1686 two-component response regulator; two component LuxR family transcriptional regulator complement(1487293..1487928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403449 YP_003166565.1 CDS CAP2UW1_1312 NC_013194.1 1487931 1489769 R KEGG: bxe:Bxe_A2886 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(1487931..1489769) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403450 YP_003166566.1 CDS CAP2UW1_1313 NC_013194.1 1489973 1490368 R PFAM: response regulator receiver; KEGG: rle:pRL110224 putative two-component response regulator; response regulator receiver protein complement(1489973..1490368) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403451 YP_003166567.1 CDS CAP2UW1_1314 NC_013194.1 1490560 1491183 R KEGG: pnu:Pnuc_1057 putative lipoprotein; hypothetical protein complement(1490560..1491183) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403452 YP_003166568.1 CDS CAP2UW1_1315 NC_013194.1 1491588 1493789 R PFAM: Patatin; surface antigen variable number repeat protein; KEGG: dar:Daro_0465 patatin; Patatin complement(1491588..1493789) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403453 YP_003166569.1 CDS CAP2UW1_1316 NC_013194.1 1493867 1494121 R PFAM: conserved hypothetical protein; KEGG: hch:HCH_04647 hypothetical protein; hypothetical protein complement(1493867..1494121) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403454 YP_003166570.1 CDS CAP2UW1_1317 NC_013194.1 1494193 1495746 R PFAM: protein of unknown function UPF0061; KEGG: mfa:Mfla_1788 hypothetical protein; hypothetical protein complement(1494193..1495746) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403455 YP_003166571.1 CDS CAP2UW1_1318 NC_013194.1 1495834 1496811 R KEGG: ajs:Ajs_1055 hypothetical protein; hypothetical protein complement(1495834..1496811) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403456 YP_003166572.1 CDS CAP2UW1_1319 NC_013194.1 1496956 1498164 R TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: mxa:MXAN_0097 HipA-like protein; HipA N-terminal domain-containing protein complement(1496956..1498164) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403457 YP_003166573.1 CDS CAP2UW1_1320 NC_013194.1 1498165 1499829 R PFAM: protein of unknown function DUF262; KEGG: mxa:MXAN_0098 hypothetical protein; hypothetical protein complement(1498165..1499829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403458 YP_003166574.1 CDS CAP2UW1_1321 NC_013194.1 1499865 1500575 R PFAM: RES domain protein; KEGG: mms:mma_1339 hypothetical protein; RES domain-containing protein complement(1499865..1500575) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403459 YP_003166575.1 CDS CAP2UW1_1322 NC_013194.1 1500572 1501009 R KEGG: mms:mma_1338 hypothetical protein; hypothetical protein complement(1500572..1501009) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403460 YP_003166576.1 CDS CAP2UW1_1323 NC_013194.1 1501287 1501526 D KEGG: eba:ebD50 hypothetical protein; hypothetical protein 1501287..1501526 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403461 YP_003166577.1 CDS CAP2UW1_1324 NC_013194.1 1502015 1503928 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Cytochrome b/b6 domain; Oxidoreductase FAD-binding domain protein; KEGG: tbd:Tbd_2563 CDP-6-deoxy-delta-3,4-glucoseen reductase; Oxidoreductase FAD-binding domain-containing protein complement(1502015..1503928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403462 YP_003166578.1 CDS CAP2UW1_1325 NC_013194.1 1503994 1504491 R KEGG: mag:amb2226 hypothetical protein; hypothetical protein complement(1503994..1504491) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403463 YP_003166579.1 CDS CAP2UW1_1326 NC_013194.1 1504722 1505171 R PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein; hypothetical protein complement(1504722..1505171) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403464 YP_003166580.1 CDS CAP2UW1_1327 NC_013194.1 1505276 1506847 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; Cytochrome b/b6 domain; KEGG: mes:Meso_4302 cytochrome b/b6-like; methyl-viologen-reducing hydrogenase subunit delta complement(1505276..1506847) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403465 YP_003166581.1 CDS CAP2UW1_1328 NC_013194.1 1507144 1507326 D KEGG: sat:SYN_00814 tfp pilus assembly protein, major pilin; tfp pilus assembly protein, major pilin 1507144..1507326 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403466 YP_003166582.1 CDS CAP2UW1_1329 NC_013194.1 1507720 1507905 D KEGG: azo:azo3355 Tfp structural protein; Tfp structural protein 1507720..1507905 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403467 YP_003166583.1 CDS CAP2UW1_1330 NC_013194.1 1507933 1508322 D KEGG: bps:BPSL0183 penicillin-binding protein; penicillin-binding protein 1507933..1508322 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403468 YP_003166584.1 CDS CAP2UW1_1331 NC_013194.1 1508388 1509191 D KEGG: azo:azo3353 hypothetical protein; hypothetical protein 1508388..1509191 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403469 YP_003166585.1 CDS CAP2UW1_1332 NC_013194.1 1509193 1510044 D KEGG: azo:azo3352 hypothetical secreted protein; hypothetical protein 1509193..1510044 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403470 YP_003166586.1 CDS CAP2UW1_1333 NC_013194.1 1510041 1510952 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo3351 putative ABC transporter ATP-binding protein; ABC transporter 1510041..1510952 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403471 YP_003166587.1 CDS CAP2UW1_1334 NC_013194.1 1511073 1512203 R KEGG: sco:SCO3725 hypothetical protein; hypothetical protein complement(1511073..1512203) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403472 YP_003166588.1 CDS CAP2UW1_1335 NC_013194.1 1512289 1513791 D KEGG: afw:Anae109_1852 hypothetical protein; hypothetical protein 1512289..1513791 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403473 YP_003166589.1 CDS CAP2UW1_1336 NC_013194.1 1513775 1515367 R KEGG: gsu:GSU2508 TPR domain protein; hypothetical protein complement(1513775..1515367) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403474 YP_003166590.1 CDS CAP2UW1_1337 NC_013194.1 1515439 1515540 D hypothetical protein 1515439..1515540 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403475 YP_003166591.1 CDS CAP2UW1_1338 NC_013194.1 1515587 1516786 R KEGG: plt:Plut_1926 hypothetical protein; hypothetical protein complement(1515587..1516786) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403476 YP_003166592.1 CDS CAP2UW1_1339 NC_013194.1 1516894 1517187 R PFAM: SpoVT/AbrB domain protein; KEGG: gdi:GDI0308 hypothetical protein; SpoVT/AbrB domain-containing protein complement(1516894..1517187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403477 YP_003166593.1 CDS CAP2UW1_1340 NC_013194.1 1517439 1518080 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: sus:Acid_7800 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1517439..1518080 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403478 YP_003166594.1 CDS CAP2UW1_1341 NC_013194.1 1518236 1519537 R PFAM: secretion protein HlyD family protein; KEGG: rle:pRL90165 putative transmembrane HlyD type I secretion protein; secretion protein HlyD family protein complement(1518236..1519537) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403479 YP_003166595.1 CDS CAP2UW1_1342 NC_013194.1 1519579 1521723 R PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: rec:RHECIAT_PC0000253 putative toxin secretion ABC transporter protein; ABC transporter complement(1519579..1521723) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403480 YP_003166596.1 CDS CAP2UW1_1343 NC_013194.1 1521809 1523809 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mag:amb2315 outer membrane protein; NodT family RND efflux system, outer membrane lipoprotein complement(1521809..1523809) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403481 YP_003166597.1 CDS CAP2UW1_1344 NC_013194.1 1523818 1525245 R KEGG: reu:Reut_A0774 hypothetical protein; hypothetical protein complement(1523818..1525245) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403482 YP_003166598.1 CDS CAP2UW1_1345 NC_013194.1 1525605 1526702 D KEGG: rxy:Rxyl_3095 glycosyl transferase, family 2; hypothetical protein 1525605..1526702 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403483 YP_003166599.1 CDS CAP2UW1_1346 NC_013194.1 1526973 1527176 R hypothetical protein complement(1526973..1527176) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403484 YP_003166600.1 CDS CAP2UW1_1347 NC_013194.1 1527173 1527967 R KEGG: gka:GK1917 hypothetical protein; hypothetical protein complement(1527173..1527967) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403485 YP_003166601.1 CDS CAP2UW1_1348 NC_013194.1 1527970 1529295 R PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase; integrase catalytic subunit complement(1527970..1529295) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403486 YP_003166602.1 CDS CAP2UW1_1349 NC_013194.1 1529425 1529958 R KEGG: chy:CHY_1250 ISChy3, orf1; hypothetical protein complement(1529425..1529958) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403487 YP_003166603.1 CDS CAP2UW1_1350 NC_013194.1 1530115 1531020 R KEGG: dol:Dole_1287 capsular polysaccharide biosynthesis protein-like protein; Capsular polysaccharide biosynthesis protein-like protein complement(1530115..1531020) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403488 YP_003166604.1 CDS CAP2UW1_1351 NC_013194.1 1531065 1531181 R hypothetical protein complement(1531065..1531181) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403489 YP_003166605.1 CDS CAP2UW1_1352 NC_013194.1 1531229 1532365 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase complement(1531229..1532365) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403490 YP_003166606.1 CDS CAP2UW1_1353 NC_013194.1 1532362 1532778 R PFAM: WxcM domain protein; KEGG: sit:TM1040_3422 WxcM-like; WxcM domain-containing protein complement(1532362..1532778) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403491 YP_003166607.1 CDS CAP2UW1_1354 NC_013194.1 1532875 1533783 R PFAM: glycosyl transferase family 2; KEGG: tel:tlr2317 probable glycosyl transferase; family 2 glycosyl transferase complement(1532875..1533783) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403492 YP_003166608.1 CDS CAP2UW1_1355 NC_013194.1 1533818 1535644 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: reu:Reut_A0772 TPR repeat; TPR repeat-containing protein complement(1533818..1535644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403493 YP_003166609.1 CDS CAP2UW1_1356 NC_013194.1 1535807 1540777 R KEGG: lch:Lcho_1754 large exoprotein involved in heme utilization or adhesion; large exoprotein involved in heme utilization or adhesion complement(1535807..1540777) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403494 YP_003166610.1 CDS CAP2UW1_1357 NC_013194.1 1541273 1542610 R KEGG: azo:azo2709 hypothetical protein; hypothetical protein complement(1541273..1542610) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403495 YP_003166611.1 CDS CAP2UW1_1358 NC_013194.1 1542615 1542905 R KEGG: esa:ESA_01285 hypothetical protein; hypothetical protein complement(1542615..1542905) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403496 YP_003166612.1 CDS CAP2UW1_1359 NC_013194.1 1542902 1543315 R PFAM: flagellar protein FliS; KEGG: dar:Daro_0781 flagellar protein FliS; flagellar protein FliS complement(1542902..1543315) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403497 YP_003166613.1 CDS CAP2UW1_1360 NC_013194.1 1543325 1544734 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: azo:azo2706 flagellar hook-associated protein; flagellar hook-associated 2 domain-containing protein complement(1543325..1544734) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403498 YP_003166614.1 CDS CAP2UW1_1361 NC_013194.1 1544785 1545150 R PFAM: flagellar protein FlaG protein; KEGG: dar:Daro_0783 flagellar protein FlaG protein; flagellar protein FlaG protein complement(1544785..1545150) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403499 YP_003166615.1 CDS CAP2UW1_1362 NC_013194.1 1545244 1547040 R PFAM: flagellin domain protein; KEGG: tbd:Tbd_1590 flagellin FliC; flagellin domain-containing protein complement(1545244..1547040) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403500 YP_003166616.1 CDS CAP2UW1_1363 NC_013194.1 1547609 1548352 D KEGG: eba:ebA782 stationary phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1547609..1548352 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403501 YP_003166617.1 CDS CAP2UW1_1364 NC_013194.1 1548349 1549005 D KEGG: dar:Daro_2523 protein-L-isoaspartate(D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; protein-L-isoaspartate O-methyltransferase 1548349..1549005 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403502 YP_003166618.1 CDS CAP2UW1_1365 NC_013194.1 1549002 1549991 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: dar:Daro_2522 peptidoglycan-binding LysM:peptidase M23B; peptidase M23 1549002..1549991 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403503 YP_003166619.1 CDS CAP2UW1_1366 NC_013194.1 1549994 1550953 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 1549994..1550953 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403504 YP_003166620.1 CDS CAP2UW1_1367 NC_013194.1 1550950 1551981 R TIGRFAM: lytic murein transglycosylase B; KEGG: dar:Daro_2520 lytic murein transglycosylase B; lytic murein transglycosylase B complement(1550950..1551981) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403505 YP_003166621.1 CDS CAP2UW1_1368 NC_013194.1 1551978 1553945 R PFAM: transglutaminase domain protein; KEGG: dar:Daro_2519 transglutaminase-like; transglutaminase domain-containing protein complement(1551978..1553945) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403506 YP_003166622.1 CDS CAP2UW1_1369 NC_013194.1 1553942 1554904 R PFAM: protein of unknown function DUF58; KEGG: dar:Daro_2518 protein of unknown function DUF58; hypothetical protein complement(1553942..1554904) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403507 YP_003166623.1 CDS CAP2UW1_1370 NC_013194.1 1554904 1555830 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_2517 ATPase associated with various cellular activities, AAA_3:ATPase associated with various cellular activities, AAA_5; ATPase complement(1554904..1555830) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403508 YP_003166624.1 CDS CAP2UW1_1371 NC_013194.1 1555941 1556867 D PFAM: histone deacetylase superfamily; KEGG: dar:Daro_2516 histone deacetylase superfamily; histone deacetylase superfamily 1555941..1556867 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403509 YP_003166625.1 CDS CAP2UW1_1372 NC_013194.1 1557001 1557885 D KEGG: azo:azo1096 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1557001..1557885 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403510 YP_003166626.1 CDS CAP2UW1_1373 NC_013194.1 1557893 1559047 D PFAM: NlpBDapX family lipoprotein; KEGG: dar:Daro_0847 NlpBDapX lipoprotein; NlpBDapX family lipoprotein 1557893..1559047 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403511 YP_003166627.1 CDS CAP2UW1_1374 NC_013194.1 1559047 1559814 D PFAM: beta-lactamase domain protein; KEGG: nmu:Nmul_A1139 beta-lactamase-like; beta-lactamase domain-containing protein 1559047..1559814 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403512 YP_003166628.1 CDS CAP2UW1_1375 NC_013194.1 1559903 1560139 R KEGG: dre:100006554 hypothetical LOC100006554; hypothetical protein complement(1559903..1560139) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403513 YP_003166629.1 CDS CAP2UW1_1376 NC_013194.1 1560467 1560850 R hypothetical protein complement(1560467..1560850) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403514 YP_003166630.1 CDS CAP2UW1_1377 NC_013194.1 1561055 1561456 D hypothetical protein 1561055..1561456 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403515 YP_003166631.1 CDS CAP2UW1_1378 NC_013194.1 1561507 1562745 D PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: pca:Pcar_0272 permease protein, NupC family of nucleoside transporters; Na+ dependent nucleoside transporter domain-containing protein 1561507..1562745 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403516 YP_003166632.1 CDS cobT NC_013194.1 1562858 1563892 R catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(1562858..1563892) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403517 YP_003166633.1 CDS CAP2UW1_1380 NC_013194.1 1563959 1564504 D PFAM: cobalbumin biosynthesis protein; KEGG: dar:Daro_0147 adenosylcobinamide kinase; Adenosylcobinamide-phosphate guanylyltransferase 1563959..1564504 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403518 YP_003166634.1 CDS CAP2UW1_1381 NC_013194.1 1564581 1565045 D PFAM: UspA domain protein; KEGG: dar:Daro_1761 UspA; UspA domain-containing protein 1564581..1565045 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403519 YP_003166635.1 CDS CAP2UW1_1382 NC_013194.1 1565066 1566544 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(1565066..1566544) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403520 YP_003166636.1 CDS CAP2UW1_1383 NC_013194.1 1566579 1567535 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: bvi:Bcep1808_2532 cobalamin biosynthesis protein; cobalamin biosynthesis protein CobD 1566579..1567535 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403521 YP_003166637.1 CDS CAP2UW1_1384 NC_013194.1 1567528 1568529 D TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: dar:Daro_0139 aminotransferase; L-threonine-O-3-phosphate decarboxylase 1567528..1568529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403522 YP_003166638.1 CDS CAP2UW1_1385 NC_013194.1 1568542 1569432 D PFAM: periplasmic binding protein; KEGG: dar:Daro_0138 periplasmic binding protein; periplasmic-binding protein 1568542..1569432 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403523 YP_003166639.1 CDS CAP2UW1_1386 NC_013194.1 1569797 1570801 D PFAM: glycosyl transferase family 2; KEGG: bpt:Bpet0641 putative bactoprenol glycosyltransferase; family 2 glycosyl transferase 1569797..1570801 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403524 YP_003166640.1 CDS CAP2UW1_1387 NC_013194.1 1570795 1572381 D PFAM: glycosyl transferase family 39; KEGG: dar:Daro_2758 glycosyl transferase, family 39; glycosyl transferase family 39 1570795..1572381 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403525 YP_003166641.1 CDS CAP2UW1_1388 NC_013194.1 1572347 1572736 R PFAM: GtrA family protein; KEGG: bav:BAV2926 bactoprenol-linked glucose translocase; GtrA family protein complement(1572347..1572736) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403526 YP_003166642.1 CDS CAP2UW1_1389 NC_013194.1 1572816 1573613 D KEGG: bpt:Bpet0643 hypothetical protein; hypothetical protein 1572816..1573613 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403527 YP_003166643.1 CDS CAP2UW1_1390 NC_013194.1 1573704 1574156 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mma:MM_0621 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 1573704..1574156 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403528 YP_003166644.1 CDS CAP2UW1_1391 NC_013194.1 1574146 1574820 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_0045 putative haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 1574146..1574820 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403529 YP_003166645.1 CDS CAP2UW1_1392 NC_013194.1 1574898 1575695 R PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1073 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1574898..1575695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403530 YP_003166646.1 CDS CAP2UW1_1393 NC_013194.1 1576101 1577414 D KEGG: hha:Hhal_0623 hypothetical protein; hypothetical protein 1576101..1577414 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403531 YP_003166647.1 CDS CAP2UW1_1394 NC_013194.1 1577671 1577856 D hypothetical protein 1577671..1577856 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403532 YP_003166648.1 CDS CAP2UW1_1395 NC_013194.1 1577853 1578494 D KEGG: gsu:GSU0887 hypothetical protein; hypothetical protein 1577853..1578494 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403533 YP_003166649.1 CDS CAP2UW1_1396 NC_013194.1 1578507 1578803 R KEGG: ace:Acel_0025 kelch repeat-containing protein; kelch repeat-containing protein complement(1578507..1578803) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403534 YP_003166650.1 CDS CAP2UW1_1397 NC_013194.1 1578800 1579471 R KEGG: ace:Acel_0233 hypothetical protein; hypothetical protein complement(1578800..1579471) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403535 YP_003166651.1 CDS CAP2UW1_1398 NC_013194.1 1579481 1580152 R PFAM: carbonic anhydrase; KEGG: pmy:Pmen_3753 carbonate dehydratase; carbonate dehydratase complement(1579481..1580152) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403536 YP_003166652.1 CDS CAP2UW1_1399 NC_013194.1 1580161 1580817 R PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_B2348 glutathione S-transferase-like; glutathione S-transferase domain-containing protein complement(1580161..1580817) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403537 YP_003166653.1 CDS CAP2UW1_1400 NC_013194.1 1581180 1581632 R KEGG: lch:Lcho_2463 hypothetical protein; hypothetical protein complement(1581180..1581632) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403538 YP_003166654.1 CDS CAP2UW1_1401 NC_013194.1 1581643 1583490 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: lch:Lcho_2464 AAA ATPase central domain protein; AAA ATPase central domain-containing protein complement(1581643..1583490) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403539 YP_003166655.1 CDS CAP2UW1_1402 NC_013194.1 1583506 1584216 R PFAM: PspA/IM30 family protein; KEGG: pna:Pnap_3139 phage shock protein A, PspA; phage shock protein PspA complement(1583506..1584216) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403540 YP_003166656.1 CDS CAP2UW1_1403 NC_013194.1 1584310 1585185 R KEGG: pna:Pnap_3138 hypothetical protein; hypothetical protein complement(1584310..1585185) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403541 YP_003166657.1 CDS CAP2UW1_1404 NC_013194.1 1585188 1586054 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mex:Mext_3345 ABC transporter related; ABC transporter complement(1585188..1586054) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403542 YP_003166658.1 CDS CAP2UW1_1405 NC_013194.1 1586051 1586848 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_12960 probable permease of ABC taurine transporter; binding-protein-dependent transport systems inner membrane component complement(1586051..1586848) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403543 YP_003166659.1 CDS CAP2UW1_1406 NC_013194.1 1586859 1588559 R PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_05413 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic components; OmpA/MotB domain-containing protein complement(1586859..1588559) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403544 YP_003166660.1 CDS CAP2UW1_1407 NC_013194.1 1588591 1589310 R KEGG: pna:Pnap_3135 putative methyl-accepting chemotaxis sensory transducer; putative methyl-accepting chemotaxis sensory transducer complement(1588591..1589310) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403545 YP_003166661.1 CDS CAP2UW1_1408 NC_013194.1 1589538 1592513 R PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; KEGG: mgm:Mmc1_0890 WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20 complement(1589538..1592513) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403546 YP_003166662.1 CDS CAP2UW1_1409 NC_013194.1 1592537 1593733 R KEGG: dar:Daro_2942 hypothetical protein; hypothetical protein complement(1592537..1593733) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403547 YP_003166663.1 CDS CAP2UW1_1410 NC_013194.1 1593854 1594666 R PFAM: MCP methyltransferase CheR-type; KEGG: dar:Daro_1146 MCP methyltransferase, CheR-type; CheR-type MCP methyltransferase complement(1593854..1594666) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403548 YP_003166664.1 CDS CAP2UW1_1411 NC_013194.1 1595261 1595887 D TIGRFAM: polysaccharide export protein, PEP-CTERM sytem-associated; PFAM: polysaccharide export protein; KEGG: azo:azo3283 conserved hypothetical polysaccharide export protein; polysaccharide export protein 1595261..1595887 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403549 YP_003166665.1 CDS CAP2UW1_1412 NC_013194.1 1595979 1597541 D TIGRFAM: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; PFAM: lipopolysaccharide biosynthesis protein; KEGG: rfr:Rfer_0659 lipopolysaccharide biosynthesis; polysaccharide chain length determinant protein 1595979..1597541 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403550 YP_003166666.1 CDS CAP2UW1_1413 NC_013194.1 1597551 1598525 D KEGG: rfr:Rfer_0660 protein-tyrosine kinase; Non-specific protein-tyrosine kinase 1597551..1598525 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403551 YP_003166667.1 CDS CAP2UW1_1414 NC_013194.1 1598656 1600119 D TIGRFAM: PEP-CTERM system associated protein; KEGG: dar:Daro_2400 hypothetical protein; PEP-CTERM system associated protein 1598656..1600119 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403552 YP_003166668.1 CDS CAP2UW1_1415 NC_013194.1 1600129 1601220 D TIGRFAM: secretion ATPase, PEP-CTERM locus subfamily; SMART: AAA ATPase; KEGG: rfr:Rfer_0662 ATPase; secretion ATPase 1600129..1601220 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403553 YP_003166669.1 CDS CAP2UW1_1416 NC_013194.1 1601233 1602414 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 1601233..1602414 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403554 YP_003166670.1 CDS CAP2UW1_1417 NC_013194.1 1602423 1603289 D TIGRFAM: polysaccharide deactylase family protein, PEP-CTERM locus subfamily; PFAM: polysaccharide deacetylase; KEGG: rfr:Rfer_0664 polysaccharide deacetylase; polysaccharide deactylase family protein 1602423..1603289 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403555 YP_003166671.1 CDS CAP2UW1_1418 NC_013194.1 1603286 1604371 D TIGRFAM: FemAB-related protein, PEP-CTERM system-associated; KEGG: dar:Daro_2404 hypothetical protein; FemAB-like protein, PEP-CTERM system-associated 1603286..1604371 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403556 YP_003166672.1 CDS CAP2UW1_1419 NC_013194.1 1604508 1606001 D TIGRFAM: eight transmembrane protein EpsH; EpsI family protein; exosortase 1; KEGG: rfr:Rfer_0666 hypothetical protein; exosortase 1 1604508..1606001 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403557 YP_003166673.1 CDS CAP2UW1_1420 NC_013194.1 1606318 1607904 D PFAM: formyl transferase domain protein; polysaccharide deacetylase; KEGG: rba:RB7144 probable predicted xylanase/chitin deacetylase; polysaccharide deacetylase 1606318..1607904 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403558 YP_003166674.1 CDS CAP2UW1_1421 NC_013194.1 1607901 1609061 D TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: neu:NE1796 glycosyl transferase group 1; sugar transferase 1607901..1609061 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403559 YP_003166675.1 CDS CAP2UW1_1422 NC_013194.1 1609184 1611124 D KEGG: dar:Daro_2408 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); exosortase 1 system-associated amidotransferase 1; PFAM: glutamine amidotransferase class-II; asparagine synthase; exosortase 1 system-associated amidotransferase 1 1609184..1611124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403560 YP_003166676.1 CDS CAP2UW1_1423 NC_013194.1 1611121 1612335 D PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0670 glycosyl transferase, group 1; group 1 glycosyl transferase 1611121..1612335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403561 YP_003166677.1 CDS CAP2UW1_1424 NC_013194.1 1612351 1614276 D KEGG: rfr:Rfer_0671 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; asparagine synthase 1612351..1614276 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403562 YP_003166678.1 CDS CAP2UW1_1425 NC_013194.1 1614273 1615487 D TIGRFAM: sugar transferase, PEP-CTERM/EpsH1 system associated; PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0672 glycosyl transferase, group 1; sugar transferase 1614273..1615487 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403563 YP_003166679.1 CDS CAP2UW1_1426 NC_013194.1 1615830 1617404 D KEGG: mjl:Mjls_3937 glycosyl transferase, family 39; hypothetical protein 1615830..1617404 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403564 YP_003166680.1 CDS CAP2UW1_1427 NC_013194.1 1617422 1617757 D KEGG: acr:Acry_2416 hypothetical protein; hypothetical protein 1617422..1617757 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403565 YP_003166681.1 CDS CAP2UW1_1428 NC_013194.1 1617747 1618799 D PFAM: glycosyl transferase family 2; KEGG: pfl:PFL_5488 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 1617747..1618799 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403566 YP_003166682.1 CDS CAP2UW1_1429 NC_013194.1 1618850 1619335 D KEGG: mba:Mbar_A2511 transposase; transposase 1618850..1619335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403567 YP_003166683.1 CDS CAP2UW1_1431 NC_013194.1 1619802 1621118 D KEGG: rfr:Rfer_0673 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1619802..1621118 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403569 YP_003166684.1 CDS CAP2UW1_1432 NC_013194.1 1621130 1622152 D PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_0674 hypothetical protein; transglutaminase domain-containing protein 1621130..1622152 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403570 YP_003166685.1 CDS CAP2UW1_1433 NC_013194.1 1622149 1623282 D PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_0675 glycosyl transferase, group 1; group 1 glycosyl transferase 1622149..1623282 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403571 YP_003166686.1 CDS CAP2UW1_1434 NC_013194.1 1623371 1624090 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: swi:Swit_2836 methyltransferase type 11; type 11 methyltransferase 1623371..1624090 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403572 YP_003166687.1 CDS CAP2UW1_1435 NC_013194.1 1624176 1625549 D KEGG: rfr:Rfer_0676 putative CapK protein; putative CapK protein 1624176..1625549 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403573 YP_003166688.1 CDS CAP2UW1_1436 NC_013194.1 1625559 1626869 D TIGRFAM: wzy family polymerase, exosortase system type 1 associated; PFAM: O-antigen polymerase; KEGG: nmu:Nmul_A0300 O-antigen polymerase; wzy family polymerase 1625559..1626869 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403574 YP_003166689.1 CDS CAP2UW1_1437 NC_013194.1 1627009 1627977 D PFAM: transposase IS4 family protein; KEGG: bvi:Bcep1808_6178 transposase, IS4 family protein; transposase IS4 family protein 1627009..1627977 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403575 YP_003166690.1 CDS CAP2UW1_1438 NC_013194.1 1628151 1629167 D PFAM: polysaccharide deacetylase; KEGG: nmu:Nmul_A0301 polysaccharide deacetylase; polysaccharide deacetylase 1628151..1629167 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403576 YP_003166691.1 CDS CAP2UW1_1441 NC_013194.1 1631792 1631989 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(1631792..1631989) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403579 YP_003166692.1 CDS CAP2UW1_1442 NC_013194.1 1631986 1632780 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(1631986..1632780) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403580 YP_003166693.1 CDS CAP2UW1_1443 NC_013194.1 1632783 1634105 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit complement(1632783..1634105) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403581 YP_003166694.1 CDS CAP2UW1_1444 NC_013194.1 1634235 1634759 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(1634235..1634759) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403582 YP_003166695.1 CDS CAP2UW1_1445 NC_013194.1 1635122 1635907 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein complement(1635122..1635907) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403583 YP_003166696.1 CDS CAP2UW1_1446 NC_013194.1 1635904 1636992 R PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase; integrase catalytic subunit complement(1635904..1636992) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403584 YP_003166697.1 CDS CAP2UW1_1447 NC_013194.1 1638067 1639593 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 1638067..1639593 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403585 YP_003166698.1 CDS CAP2UW1_1448 NC_013194.1 1639649 1640452 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein 1639649..1640452 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403586 YP_003166699.1 CDS CAP2UW1_1451 NC_013194.1 1641854 1642291 D KEGG: mms:mma_3461 hypothetical protein; hypothetical protein 1641854..1642291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403589 YP_003166700.1 CDS CAP2UW1_1452 NC_013194.1 1642351 1643208 R KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein complement(1642351..1643208) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403590 YP_003166701.1 CDS CAP2UW1_1454 NC_013194.1 1645080 1646078 D SMART: ParB domain protein nuclease; KEGG: sus:Acid_0648 ParB domain protein nuclease; ParB domain-containing protein nuclease 1645080..1646078 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403592 YP_003166702.1 CDS CAP2UW1_1455 NC_013194.1 1646101 1647375 D KEGG: sus:Acid_0647 hypothetical protein; hypothetical protein 1646101..1647375 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403593 YP_003166703.1 CDS CAP2UW1_1456 NC_013194.1 1647368 1648183 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sus:Acid_0646 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein 1647368..1648183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403594 YP_003166704.1 CDS CAP2UW1_1457 NC_013194.1 1649249 1650388 R KEGG: tvo:TVN1411 predicted inactivated transposase; hypothetical protein complement(1649249..1650388) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403595 YP_003166705.1 CDS CAP2UW1_1458 NC_013194.1 1652302 1653861 R KEGG: sru:SRU_2295 phosphate ABC transporter, permease protein PstA; hypothetical protein complement(1652302..1653861) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403596 YP_003166706.1 CDS CAP2UW1_1460 NC_013194.1 1655270 1656250 D PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902; transposase IS111A/IS1328/IS1533 1655270..1656250 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403598 YP_003166707.1 CDS CAP2UW1_1461 NC_013194.1 1656657 1657796 R PFAM: transposase IS4 family protein; KEGG: azo:azo2983 putative transposase; transposase IS4 family protein complement(1656657..1657796) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403599 YP_003166708.1 CDS CAP2UW1_1462 NC_013194.1 1657952 1658800 R KEGG: gur:Gura_3178 hypothetical protein; hypothetical protein complement(1657952..1658800) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403600 YP_003166709.1 CDS CAP2UW1_1463 NC_013194.1 1658892 1660352 R PFAM: polysaccharide biosynthesis protein; KEGG: noc:Noc_1942 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1658892..1660352) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403601 YP_003166710.1 CDS CAP2UW1_1464 NC_013194.1 1660518 1660952 D KEGG: psa:PST_0577 hypothetical protein; hypothetical protein 1660518..1660952 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403602 YP_003166711.1 CDS CAP2UW1_1466 NC_013194.1 1661176 1661481 D PFAM: transposase IS3/IS911 family protein; KEGG: eba:ebB236 probable transposase (fragment); transposase IS3/IS911 family protein 1661176..1661481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403604 YP_003166712.1 CDS CAP2UW1_1467 NC_013194.1 1661478 1662311 D PFAM: Integrase catalytic region; KEGG: eba:ebA6779 transposase; integrase catalytic subunit 1661478..1662311 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403605 YP_003166713.1 CDS CAP2UW1_1469 NC_013194.1 1662718 1663746 D KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein 1662718..1663746 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403607 YP_003166714.1 CDS CAP2UW1_1470 NC_013194.1 1663752 1664186 R KEGG: psa:PST_0577 hypothetical protein; hypothetical protein complement(1663752..1664186) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403608 YP_003166715.1 CDS CAP2UW1_1471 NC_013194.1 1664775 1665545 D KEGG: tbd:Tbd_0304 hypothetical protein containg TPR repeat; hypothetical protein 1664775..1665545 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403609 YP_003166716.1 CDS CAP2UW1_1472 NC_013194.1 1665830 1667176 D PFAM: FAD linked oxidase domain protein; KEGG: noc:Noc_1951 FAD linked oxidase-like; FAD linked oxidase domain-containing protein 1665830..1667176 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403610 YP_003166717.1 CDS CAP2UW1_1473 NC_013194.1 1667173 1667910 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: noc:Noc_1950 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1667173..1667910 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403611 YP_003166718.1 CDS CAP2UW1_1474 NC_013194.1 1667911 1668531 D TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: noc:Noc_1949 HAD-superfamily hydrolase subfamily IB, PSPase-like; HAD-superfamily hydrolase 1667911..1668531 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403612 YP_003166719.1 CDS CAP2UW1_1475 NC_013194.1 1668528 1669400 D PFAM: UbiA prenyltransferase; KEGG: noc:Noc_1948 UbiA prenyltransferase; UbiA prenyltransferase 1668528..1669400 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403613 YP_003166720.1 CDS CAP2UW1_1476 NC_013194.1 1669406 1670389 D PFAM: conserved hypothetical protein; KEGG: noc:Noc_1947 conserved hypothetical protein 374; hypothetical protein 1669406..1670389 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403614 YP_003166721.1 CDS CAP2UW1_1477 NC_013194.1 1670609 1672846 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: sde:Sde_1361 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 1670609..1672846 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403615 YP_003166722.1 CDS CAP2UW1_1478 NC_013194.1 1672843 1673949 D PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_2947 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 1672843..1673949 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403616 YP_003166723.1 CDS CAP2UW1_1479 NC_013194.1 1673946 1676336 D KEGG: har:HEAR1210 hypothetical protein; putative signal peptide; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1673946..1676336 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403617 YP_003166724.1 CDS CAP2UW1_1480 NC_013194.1 1676413 1678563 R PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter; sulfate transporter complement(1676413..1678563) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403618 YP_003166725.1 CDS CAP2UW1_1481 NC_013194.1 1679165 1679584 D KEGG: cvi:CV_2941 N-glycosyltransferase PgaC; N-glycosyltransferase PgaC 1679165..1679584 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403619 YP_003166726.1 CDS CAP2UW1_1482 NC_013194.1 1679581 1679805 D hypothetical protein 1679581..1679805 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403620 YP_003166727.1 CDS CAP2UW1_1483 NC_013194.1 1679962 1680684 D KEGG: gur:Gura_0959 hypothetical protein; hypothetical protein 1679962..1680684 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403621 YP_003166728.1 CDS CAP2UW1_1484 NC_013194.1 1680721 1681596 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: lch:Lcho_1109 protein of unknown function DUF6 transmembrane; hypothetical protein complement(1680721..1681596) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403622 YP_003166729.1 CDS CAP2UW1_1485 NC_013194.1 1681668 1682171 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: lch:Lcho_1108 methylated-DNA--protein-cysteine methyltransferase; methylated-DNA/protein-cysteine methyltransferase complement(1681668..1682171) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403623 YP_003166730.1 CDS CAP2UW1_1486 NC_013194.1 1682168 1683631 R PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: lch:Lcho_1107 transcriptional regulator, AraC family; AraC family transcriptional regulator complement(1682168..1683631) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403624 YP_003166731.1 CDS CAP2UW1_1487 NC_013194.1 1684028 1684771 D hypothetical protein 1684028..1684771 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403625 YP_003166732.1 CDS CAP2UW1_1488 NC_013194.1 1684879 1685082 D PFAM: Heavy metal transport/detoxification protein; KEGG: tfu:Tfu_0951 putative metal-binding protein; Heavy metal transport/detoxification protein 1684879..1685082 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403626 YP_003166733.1 CDS CAP2UW1_1489 NC_013194.1 1685291 1686211 D PFAM: Lytic transglycosylase catalytic; KEGG: aha:AHA_0954 lytic transglycosylase, catalytic; lytic transglycosylase subunit 1685291..1686211 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403627 YP_003166734.1 CDS CAP2UW1_1490 NC_013194.1 1686492 1687265 D PFAM: extracellular solute-binding protein family 3; KEGG: ttj:TTHA1171 amino acid ABC transporter, periplasmic amino acid-binding protein; family 3 extracellular solute-binding protein 1686492..1687265 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403628 YP_003166735.1 CDS CAP2UW1_1491 NC_013194.1 1687281 1688039 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter permease 1687281..1688039 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403629 YP_003166736.1 CDS CAP2UW1_1492 NC_013194.1 1688053 1688805 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dge:Dgeo_1064 ABC transporter related; ABC transporter 1688053..1688805 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403630 YP_003166737.1 CDS CAP2UW1_1493 NC_013194.1 1688837 1689763 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dps:DP0671 hypothetical protein; hypothetical protein complement(1688837..1689763) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403631 YP_003166738.1 CDS CAP2UW1_1494 NC_013194.1 1689909 1691285 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: gur:Gura_2552 type I secretion membrane fusion protein, HlyD family; HlyD family type I secretion membrane fusion protein complement(1689909..1691285) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403632 YP_003166739.1 CDS CAP2UW1_1495 NC_013194.1 1691352 1703477 R PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: ppd:Ppro_2370 Ig family protein; Hemolysin-type calcium-binding domain-containing protein complement(1691352..1703477) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403633 YP_003166740.1 CDS CAP2UW1_1496 NC_013194.1 1703480 1704370 R KEGG: vei:Veis_2578 hypothetical protein; hypothetical protein complement(1703480..1704370) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403634 YP_003166741.1 CDS CAP2UW1_1497 NC_013194.1 1704610 1705089 R KEGG: dar:Daro_0850 hypothetical protein; hypothetical protein complement(1704610..1705089) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403635 YP_003166742.1 CDS glyA NC_013194.1 1705196 1706455 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1705196..1706455 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403636 YP_003166743.1 CDS nrdR NC_013194.1 1706452 1706922 D PFAM: ATP-cone domain protein; KEGG: dar:Daro_0604 hypothetical protein; transcriptional regulator NrdR 1706452..1706922 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403637 YP_003166744.1 CDS CAP2UW1_1500 NC_013194.1 1706931 1708028 D KEGG: dar:Daro_0605 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1706931..1708028 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403638 YP_003166745.1 CDS CAP2UW1_1501 NC_013194.1 1708021 1708779 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: azo:azo2804 adenylyltransferase, putative; UBA/THIF-type NAD/FAD-binding protein complement(1708021..1708779) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403639 YP_003166746.1 CDS CAP2UW1_1502 NC_013194.1 1708790 1709209 R KEGG: dar:Daro_0607 hypothetical protein; hypothetical protein complement(1708790..1709209) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403640 YP_003166747.1 CDS CAP2UW1_1503 NC_013194.1 1709232 1710644 R KEGG: dar:Daro_0608 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1709232..1710644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403641 YP_003166748.1 CDS CAP2UW1_1504 NC_013194.1 1710667 1712115 R PFAM: Peptidase M23; KEGG: dar:Daro_0609 peptidase M23B; peptidase M23 complement(1710667..1712115) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403642 YP_003166749.1 CDS CAP2UW1_1505 NC_013194.1 1712174 1712482 D PFAM: regulatory protein ArsR; KEGG: dar:Daro_0610 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1712174..1712482 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403643 YP_003166750.1 CDS CAP2UW1_1506 NC_013194.1 1712505 1713014 D PFAM: Rhodanese domain protein; KEGG: dar:Daro_0611 rhodanese-like; Rhodanese domain-containing protein 1712505..1713014 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403644 YP_003166751.1 CDS CAP2UW1_1507 NC_013194.1 1713011 1713286 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: dar:Daro_0612 glutaredoxin, GrxC; glutaredoxin 3 1713011..1713286 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403645 YP_003166752.1 CDS CAP2UW1_1508 NC_013194.1 1713337 1713804 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1713337..1713804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403646 YP_003166753.1 CDS CAP2UW1_1509 NC_013194.1 1713822 1714256 D PFAM: protein of unknown function DUF1058; KEGG: dar:Daro_0614 protein of unknown function DUF1058; hypothetical protein 1713822..1714256 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403647 YP_003166754.1 CDS gpsA NC_013194.1 1714263 1715252 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1714263..1715252 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403648 YP_003166755.1 CDS CAP2UW1_1511 NC_013194.1 1715249 1715347 R hypothetical protein complement(1715249..1715347) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403649 YP_003166756.1 CDS CAP2UW1_1512 NC_013194.1 1715546 1717072 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(1715546..1717072) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403650 YP_003166757.1 CDS CAP2UW1_1513 NC_013194.1 1717520 1718101 R KEGG: ppd:Ppro_1433 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(1717520..1718101) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403651 YP_003166758.1 CDS CAP2UW1_1514 NC_013194.1 1718585 1719997 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: mag:amb2556 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 1718585..1719997 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403652 YP_003166759.1 CDS CAP2UW1_1515 NC_013194.1 1719999 1721183 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: reu:Reut_A1203 acetate kinase; acetate kinase 1719999..1721183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403653 YP_003166760.1 CDS CAP2UW1_1516 NC_013194.1 1721283 1722116 R KEGG: bid:Bind_0201 enoyl-(acyl carrier protein) reductase; enoyl-(acyl carrier protein) reductase complement(1721283..1722116) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403654 YP_003166761.1 CDS CAP2UW1_1517 NC_013194.1 1722395 1725151 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1722395..1725151 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403655 YP_003166762.1 CDS CAP2UW1_1518 NC_013194.1 1725531 1726559 D KEGG: reh:H16_A2156 hypothetical protein; hypothetical protein 1725531..1726559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403656 YP_003166763.1 CDS CAP2UW1_1519 NC_013194.1 1726653 1727039 D PFAM: protein of unknown function DUF1622; KEGG: mxa:MXAN_6597 hypothetical protein; hypothetical protein 1726653..1727039 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403657 YP_003166764.1 CDS CAP2UW1_1520 NC_013194.1 1727354 1728772 D KEGG: reu:Reut_A1207 hypothetical protein; hypothetical protein 1727354..1728772 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403658 YP_003166765.1 CDS CAP2UW1_1521 NC_013194.1 1728769 1730523 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: reu:Reut_A1208 sulphate anion transporter; sulfate transporter 1728769..1730523 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403659 YP_003166766.1 CDS CAP2UW1_1522 NC_013194.1 1730583 1731485 R PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 protein of unknown function DUF344; hypothetical protein complement(1730583..1731485) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403660 YP_003166767.1 CDS CAP2UW1_1523 NC_013194.1 1731600 1733018 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02946 type I secretion outer membrane protein; NodT family RND efflux system, outer membrane lipoprotein complement(1731600..1733018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403661 YP_003166768.1 CDS CAP2UW1_1524 NC_013194.1 1733011 1736217 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_1457 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1733011..1736217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403662 YP_003166769.1 CDS CAP2UW1_1525 NC_013194.1 1736224 1737438 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sat:SYN_02948 acriflavin resistance periplasmic protein; RND family efflux transporter MFP subunit complement(1736224..1737438) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403663 YP_003166770.1 CDS CAP2UW1_1526 NC_013194.1 1737812 1740667 R TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: azo:azo1613 probable ribonuclease E; Rne/Rng family ribonuclease complement(1737812..1740667) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403664 YP_003166771.1 CDS CAP2UW1_1527 NC_013194.1 1741073 1742059 D KEGG: dar:Daro_2006 ribosomal large subunit pseudouridine synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1741073..1742059 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403665 YP_003166772.1 CDS CAP2UW1_1528 NC_013194.1 1742043 1742699 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: azo:azo1615 probable hydrolase; HAD-superfamily hydrolase 1742043..1742699 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403666 YP_003166773.1 CDS CAP2UW1_1529 NC_013194.1 1742678 1743037 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: tbd:Tbd_1561 hypothetical protein; Rieske (2Fe-2S) domain-containing protein 1742678..1743037 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403667 YP_003166774.1 CDS CAP2UW1_1530 NC_013194.1 1743034 1743984 D PFAM: peptidase S49; KEGG: dar:Daro_2009 peptidase S49; peptidase S49 1743034..1743984 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403668 YP_003166775.1 CDS CAP2UW1_1531 NC_013194.1 1744021 1744731 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bph:Bphy_0823 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(1744021..1744731) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403669 YP_003166776.1 CDS CAP2UW1_1532 NC_013194.1 1744765 1745415 R TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: dar:Daro_2011 Maf-like protein; maf protein complement(1744765..1745415) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403670 YP_003166777.1 CDS CAP2UW1_1533 NC_013194.1 1745464 1745955 D PFAM: protein of unknown function DUF177; KEGG: dar:Daro_2012 protein of unknown function DUF177; hypothetical protein 1745464..1745955 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403671 YP_003166778.1 CDS CAP2UW1_1534 NC_013194.1 1745980 1746159 D TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: eba:ebC5 50S ribosomal protein L32; 50S ribosomal protein L32 1745980..1746159 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403672 YP_003166779.1 CDS CAP2UW1_1535 NC_013194.1 1746229 1747242 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1746229..1747242 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403673 YP_003166780.1 CDS CAP2UW1_1536 NC_013194.1 1747244 1748203 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1747244..1748203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403674 YP_003166781.1 CDS CAP2UW1_1537 NC_013194.1 1748215 1749156 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: dar:Daro_2016 [acyl-carrier-protein] S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1748215..1749156 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403675 YP_003166782.1 CDS CAP2UW1_1538 NC_013194.1 1749163 1749903 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA5457 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase 1749163..1749903 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403676 YP_003166783.1 CDS CAP2UW1_1539 NC_013194.1 1750022 1750258 D TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: azo:azo1626 AcpP protein; acyl carrier protein 1750022..1750258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403677 YP_003166784.1 CDS CAP2UW1_1540 NC_013194.1 1750322 1751608 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: nmu:Nmul_A1076 beta-ketoacyl synthase; 3-oxoacyl-ACP synthase II 1750322..1751608 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403678 YP_003166785.1 CDS CAP2UW1_1541 NC_013194.1 1751630 1752064 D KEGG: neu:NE1513 hypothetical protein; hypothetical protein 1751630..1752064 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403679 YP_003166786.1 CDS CAP2UW1_1542 NC_013194.1 1752036 1753619 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1752036..1753619) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403680 YP_003166787.1 CDS CAP2UW1_1543 NC_013194.1 1753819 1754418 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1753819..1754418 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403681 YP_003166788.1 CDS CAP2UW1_1544 NC_013194.1 1754437 1754853 D PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: dar:Daro_2023 positive regulator of sigma(E), RseC/MucC; positive regulator of sigma E, RseC/MucC 1754437..1754853 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403682 YP_003166789.1 CDS CAP2UW1_1545 NC_013194.1 1754931 1756370 D KEGG: dar:Daro_2024 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1754931..1756370 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403683 YP_003166790.1 CDS CAP2UW1_1546 NC_013194.1 1756367 1756618 D PFAM: glutaredoxin 2; KEGG: dar:Daro_2025 glutaredoxin 2; glutaredoxin 2 1756367..1756618 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403684 YP_003166791.1 CDS CAP2UW1_1547 NC_013194.1 1756708 1758504 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1756708..1758504 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403685 YP_003166792.1 CDS CAP2UW1_1548 NC_013194.1 1758517 1759305 D KEGG: dar:Daro_2027 Signal peptidase I. Serine peptidase. MEROPS family S26A; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1758517..1759305 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403686 YP_003166793.1 CDS CAP2UW1_1549 NC_013194.1 1759318 1759683 D KEGG: lch:Lcho_0599 hypothetical protein; hypothetical protein 1759318..1759683 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403687 YP_003166794.1 CDS CAP2UW1_1550 NC_013194.1 1759680 1760351 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: dar:Daro_2029 ribonuclease III, bacterial; Ribonuclease III 1759680..1760351 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403688 YP_003166795.1 CDS era NC_013194.1 1760348 1761232 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1760348..1761232 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403689 YP_003166796.1 CDS recO NC_013194.1 1761271 1761987 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1761271..1761987 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403690 YP_003166797.1 CDS CAP2UW1_1553 NC_013194.1 1761984 1762739 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1761984..1762739 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403691 YP_003166798.1 CDS CAP2UW1_1554 NC_013194.1 1762736 1763113 D KEGG: dar:Daro_2033 holo-acyl carrier protein synthase:phosphopantethiene-protein transferase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-ACP synthase 1762736..1763113 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403692 YP_003166799.1 CDS CAP2UW1_1555 NC_013194.1 1763110 1764138 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1763110..1764138 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403693 YP_003166800.1 CDS CAP2UW1_1556 NC_013194.1 1764226 1764783 R TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: azo:azo0086 elongation factor P; translation elongation factor P complement(1764226..1764783) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403694 YP_003166801.1 CDS CAP2UW1_1557 NC_013194.1 1764820 1766010 R KEGG: azo:azo0085 hypothetical protein; hypothetical protein complement(1764820..1766010) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403695 YP_003166802.1 CDS uvrC NC_013194.1 1766055 1767866 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1766055..1767866 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403696 YP_003166803.1 CDS CAP2UW1_1559 NC_013194.1 1767866 1768444 D KEGG: dar:Daro_2039 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1767866..1768444 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403697 YP_003166804.1 CDS CAP2UW1_1560 NC_013194.1 1769268 1770209 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mms:mma_1573 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1769268..1770209) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403700 YP_003166805.1 CDS CAP2UW1_1561 NC_013194.1 1770528 1771223 D hypothetical protein 1770528..1771223 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403701 YP_003166806.1 CDS CAP2UW1_1562 NC_013194.1 1771240 1771491 D KEGG: gsu:GSU0757 lipoprotein, putative; lipoprotein 1771240..1771491 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403702 YP_003166807.1 CDS CAP2UW1_1563 NC_013194.1 1771504 1772145 D PFAM: protein of unknown function DUF1311; KEGG: son:SO_0112 hypothetical protein; hypothetical protein 1771504..1772145 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403703 YP_003166808.1 CDS CAP2UW1_1564 NC_013194.1 1772150 1773304 D KEGG: swi:Swit_0419 hypothetical protein; hypothetical protein 1772150..1773304 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403704 YP_003166809.1 CDS CAP2UW1_1565 NC_013194.1 1773485 1774012 D hypothetical protein 1773485..1774012 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403705 YP_003166810.1 CDS CAP2UW1_1566 NC_013194.1 1774204 1775649 D PFAM: peptidase S10 serine carboxypeptidase; KEGG: cyb:CYB_1865 peptidase, S10 (carboxypeptidase Y) family; peptidase S10 serine carboxypeptidase 1774204..1775649 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403706 YP_003166811.1 CDS CAP2UW1_1567 NC_013194.1 1775720 1776589 R PFAM: Abortive infection protein; KEGG: cph:Cpha266_0281 abortive infection protein; abortive infection protein complement(1775720..1776589) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403707 YP_003166812.1 CDS CAP2UW1_1568 NC_013194.1 1776603 1776827 R hypothetical protein complement(1776603..1776827) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403708 YP_003166813.1 CDS CAP2UW1_1569 NC_013194.1 1776872 1778899 R KEGG: fjo:Fjoh_4868 aminopeptidase N-like protein; aminopeptidase N-like protein complement(1776872..1778899) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403709 YP_003166814.1 CDS CAP2UW1_1571 NC_013194.1 1781709 1781927 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: pna:Pnap_4887 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1781709..1781927 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403711 YP_003166815.1 CDS CAP2UW1_1572 NC_013194.1 1781927 1782331 D KEGG: lch:Lcho_4258 PilT protein domain protein; PilT protein domain-containing protein 1781927..1782331 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403712 YP_003166816.1 CDS CAP2UW1_1573 NC_013194.1 1782590 1784743 D KEGG: pin:Ping_2519 hypothetical protein; hypothetical protein 1782590..1784743 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403713 YP_003166817.1 CDS CAP2UW1_1574 NC_013194.1 1785067 1786377 D KEGG: pna:Pnap_4278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein 1785067..1786377 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403714 YP_003166818.1 CDS CAP2UW1_1575 NC_013194.1 1786405 1788222 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pna:Pnap_4277 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase domain-containing protein 1786405..1788222 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403715 YP_003166819.1 CDS CAP2UW1_1576 NC_013194.1 1788213 1788464 D hypothetical protein 1788213..1788464 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403716 YP_003166820.1 CDS CAP2UW1_1577 NC_013194.1 1788481 1789524 R hypothetical protein complement(1788481..1789524) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403717 YP_003166821.1 CDS CAP2UW1_1578 NC_013194.1 1789647 1790021 R PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3376 heat shock protein HSP20; heat shock protein Hsp20 complement(1789647..1790021) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403718 YP_003166822.1 CDS CAP2UW1_1579 NC_013194.1 1790034 1790468 R PFAM: heat shock protein Hsp20; KEGG: lch:Lcho_3375 heat shock protein HSP20; heat shock protein Hsp20 complement(1790034..1790468) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403719 YP_003166823.1 CDS CAP2UW1_1580 NC_013194.1 1790623 1791576 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: tbd:Tbd_1431 putative heat shock protein, DnaJ family; heat shock protein DnaJ domain-containing protein 1790623..1791576 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403720 YP_003166824.1 CDS CAP2UW1_1581 NC_013194.1 1791580 1791888 D KEGG: tbd:Tbd_1430 transcriptional regulatory protein, MerR family; MerR family transcriptional regulator 1791580..1791888 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403721 YP_003166825.1 CDS CAP2UW1_1582 NC_013194.1 1791895 1792845 D PFAM: peptidase M48 Ste24p; KEGG: dde:Dde_3419 peptidase, M48 family; peptidase M48 Ste24p 1791895..1792845 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403722 YP_003166826.1 CDS CAP2UW1_1583 NC_013194.1 1793037 1793378 D PFAM: Propeptide PepSY amd peptidase M4; KEGG: rha:RHA1_ro04784 hypothetical protein; propeptide PepSY amd peptidase M4 1793037..1793378 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403723 YP_003166827.1 CDS CAP2UW1_1584 NC_013194.1 1793466 1794098 D PFAM: cytochrome B561; KEGG: shn:Shewana3_0245 cytochrome b561; cytochrome B561 1793466..1794098 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403724 YP_003166828.1 CDS CAP2UW1_1585 NC_013194.1 1794273 1795208 D PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1513 probable hydrolase; alpha/beta hydrolase fold protein 1794273..1795208 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403725 YP_003166829.1 CDS CAP2UW1_1586 NC_013194.1 1795284 1796819 D PFAM: AMP-dependent synthetase and ligase; KEGG: mpt:Mpe_A2687 putative long-chain-fatty-acid CoA ligase; AMP-dependent synthetase and ligase 1795284..1796819 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403726 YP_003166830.1 CDS CAP2UW1_1587 NC_013194.1 1796822 1797625 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_4457 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1796822..1797625 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403727 YP_003166831.1 CDS CAP2UW1_1588 NC_013194.1 1797804 1798175 D KEGG: sus:Acid_6837 hypothetical protein; hypothetical protein 1797804..1798175 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403728 YP_003166832.1 CDS CAP2UW1_1589 NC_013194.1 1798727 1799446 D hypothetical protein 1798727..1799446 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403729 YP_003166833.1 CDS CAP2UW1_1590 NC_013194.1 1799518 1803465 R KEGG: rxy:Rxyl_0317 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching enzyme GlgX complement(1799518..1803465) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403730 YP_003166834.1 CDS CAP2UW1_1591 NC_013194.1 1803855 1804013 D hypothetical protein 1803855..1804013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403731 YP_003166835.1 CDS CAP2UW1_1592 NC_013194.1 1804010 1804750 D PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: dar:Daro_3338 YcgR; type IV pilus assembly PilZ 1804010..1804750 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403732 YP_003166836.1 CDS CAP2UW1_1593 NC_013194.1 1804849 1805121 R hypothetical protein complement(1804849..1805121) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403733 YP_003166837.1 CDS CAP2UW1_1594 NC_013194.1 1806056 1808356 D TIGRFAM: selenide, water dikinase; pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: AIR synthase related protein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_1613 selenide, water dikinase; pyridine nucleotide-disulfide oxidoreductase family protein 1806056..1808356 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403734 YP_003166838.1 CDS CAP2UW1_1595 NC_013194.1 1808522 1808941 D KEGG: scl:sce0865 hypothetical protein; hypothetical protein 1808522..1808941 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403735 YP_003166839.1 CDS CAP2UW1_1596 NC_013194.1 1808962 1809939 R KEGG: dar:Daro_2817 hypothetical protein; hypothetical protein complement(1808962..1809939) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403736 YP_003166840.1 CDS CAP2UW1_1597 NC_013194.1 1810253 1811563 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bbr:BB4010 putative two-component sensor; integral membrane sensor signal transduction histidine kinase complement(1810253..1811563) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403737 YP_003166841.1 CDS CAP2UW1_1598 NC_013194.1 1811560 1812312 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mfa:Mfla_0654 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1811560..1812312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403738 YP_003166842.1 CDS CAP2UW1_1599 NC_013194.1 1812481 1812987 D KEGG: bxe:Bxe_A3388 hypothetical protein; hypothetical protein 1812481..1812987 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403739 YP_003166843.1 CDS CAP2UW1_1600 NC_013194.1 1813228 1815366 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: csc:Csac_2437 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 1813228..1815366 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403740 YP_003166844.1 CDS CAP2UW1_1601 NC_013194.1 1815489 1817012 D TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: pol:Bpro_2303 diacylglycerol O-acyltransferase; WS/DGAT/MGAT acyltransferase 1815489..1817012 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403741 YP_003166845.1 CDS CAP2UW1_1602 NC_013194.1 1817169 1818023 R KEGG: rno:686441 hypothetical protein LOC686441; hypothetical protein complement(1817169..1818023) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403742 YP_003166846.1 CDS CAP2UW1_1603 NC_013194.1 1819041 1820270 D hypothetical protein 1819041..1820270 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403743 YP_003166847.1 CDS CAP2UW1_1604 NC_013194.1 1820320 1820775 D KEGG: cau:Caur_1173 hypothetical protein; hypothetical protein 1820320..1820775 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403744 YP_003166848.1 CDS CAP2UW1_1605 NC_013194.1 1820833 1821624 D KEGG: bja:blr2889 hypothetical protein; hypothetical protein 1820833..1821624 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403745 YP_003166849.1 CDS CAP2UW1_1606 NC_013194.1 1821633 1822625 D PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1821633..1822625 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403746 YP_003166850.1 CDS CAP2UW1_1607 NC_013194.1 1822617 1823993 R PFAM: carbonic anhydrase; KEGG: dar:Daro_3922 carbonic anhydrase, eukaryotic; carbonate dehydratase complement(1822617..1823993) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403747 YP_003166851.1 CDS actP NC_013194.1 1824165 1825829 R member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake; acetate permease complement(1824165..1825829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403748 YP_003166852.1 CDS CAP2UW1_1609 NC_013194.1 1825826 1826146 R PFAM: protein of unknown function DUF485; KEGG: dar:Daro_4011 protein of unknown function DUF485; hypothetical protein complement(1825826..1826146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403749 YP_003166853.1 CDS CAP2UW1_1610 NC_013194.1 1826326 1827018 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dar:Daro_0248 cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator complement(1826326..1827018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403750 YP_003166854.1 CDS CAP2UW1_1611 NC_013194.1 1827244 1829202 D PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_0249 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1827244..1829202 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403751 YP_003166855.1 CDS CAP2UW1_1612 NC_013194.1 1829202 1829984 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo3446 ABC transporter ATP-binding protein; ABC transporter 1829202..1829984 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403752 YP_003166856.1 CDS CAP2UW1_1613 NC_013194.1 1829997 1830926 D PFAM: inner-membrane translocator; KEGG: pna:Pnap_3609 inner-membrane translocator; inner-membrane translocator 1829997..1830926 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403753 YP_003166857.1 CDS CAP2UW1_1614 NC_013194.1 1830942 1832018 D PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3539 inner-membrane translocator; inner-membrane translocator 1830942..1832018 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403754 YP_003166858.1 CDS CAP2UW1_1615 NC_013194.1 1832104 1833441 D KEGG: pol:Bpro_0600 hypothetical protein; hypothetical protein 1832104..1833441 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403755 YP_003166859.1 CDS CAP2UW1_1616 NC_013194.1 1833522 1834334 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lch:Lcho_3439 ABC transporter-related protein; ABC transporter 1833522..1834334 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403756 YP_003166860.1 CDS CAP2UW1_1617 NC_013194.1 1834331 1834900 D KEGG: dar:Daro_0256 hypothetical protein; hypothetical protein 1834331..1834900 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403757 YP_003166861.1 CDS CAP2UW1_1618 NC_013194.1 1834897 1836063 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: azo:azo3440 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 1834897..1836063 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403758 YP_003166862.1 CDS CAP2UW1_1619 NC_013194.1 1836179 1836625 R KEGG: dar:Daro_0263 hypothetical protein; hypothetical protein complement(1836179..1836625) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403759 YP_003166863.1 CDS CAP2UW1_1620 NC_013194.1 1836908 1837921 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cti:RALTA_p0442 putative zinc-containing alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein complement(1836908..1837921) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403760 YP_003166864.1 CDS CAP2UW1_1621 NC_013194.1 1838156 1839046 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_4080 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(1838156..1839046) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403761 YP_003166865.1 CDS CAP2UW1_1622 NC_013194.1 1839144 1840043 D PFAM: protein of unknown function DUF6 transmembrane; UAA transporter; KEGG: dar:Daro_4081 protein of unknown function DUF6, transmembrane; hypothetical protein 1839144..1840043 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403762 YP_003166866.1 CDS CAP2UW1_1623 NC_013194.1 1840212 1842386 R KEGG: net:Neut_2246 hypothetical protein; hypothetical protein complement(1840212..1842386) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403763 YP_003166867.1 CDS CAP2UW1_1624 NC_013194.1 1842386 1843588 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: noc:Noc_1960 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1842386..1843588) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403764 YP_003166868.1 CDS CAP2UW1_1625 NC_013194.1 1843658 1844863 R TIGRFAM: pyridoxal-dependent decarboxylase, exosortase system type 1 associated; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: eba:ebA4296 ornithine/diaminopimelate/arginine decarboxylase,family 2; pyridoxal-dependent decarboxylase complement(1843658..1844863) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403765 YP_003166869.1 CDS CAP2UW1_1626 NC_013194.1 1844899 1846545 R TIGRFAM: acyl-CoA ligase (AMP-forming), exosortase system type 1 associated; PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_2434 AMP-dependent synthetase and ligase; acyl-CoA ligase complement(1844899..1846545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403766 YP_003166870.1 CDS CAP2UW1_1627 NC_013194.1 1846745 1848547 R PFAM: asparagine synthase; KEGG: azo:azo3247 probable asparagine synthase; asparagine synthase complement(1846745..1848547) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403767 YP_003166871.1 CDS CAP2UW1_1628 NC_013194.1 1848943 1851144 R KEGG: net:Neut_0942 hypothetical protein; hypothetical protein complement(1848943..1851144) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403768 YP_003166872.1 CDS CAP2UW1_1629 NC_013194.1 1851792 1853996 R KEGG: dar:Daro_3743 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1851792..1853996) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403769 YP_003166873.1 CDS CAP2UW1_1630 NC_013194.1 1853999 1856200 R PFAM: ATP-binding region ATPase domain protein; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: dar:Daro_3744 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase complement(1853999..1856200) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403770 YP_003166874.1 CDS CAP2UW1_1631 NC_013194.1 1856279 1857067 R KEGG: azo:azo3178 hypothetical protein; hypothetical protein complement(1856279..1857067) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403771 YP_003166875.1 CDS CAP2UW1_1632 NC_013194.1 1857289 1858086 R KEGG: dar:Daro_2390 hypothetical protein; hypothetical protein complement(1857289..1858086) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403772 YP_003166876.1 CDS CAP2UW1_1633 NC_013194.1 1858141 1858950 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2391 ABC transporter related; ABC transporter 1858141..1858950 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403773 YP_003166877.1 CDS CAP2UW1_1634 NC_013194.1 1858934 1860499 D KEGG: dar:Daro_2392 hypothetical protein; hypothetical protein 1858934..1860499 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403774 YP_003166878.1 CDS CAP2UW1_1635 NC_013194.1 1860487 1861494 R TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0056 alcohol dehydrogenase GroES-like protein; zinc-binding alcohol dehydrogenase family protein complement(1860487..1861494) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403775 YP_003166879.1 CDS CAP2UW1_1636 NC_013194.1 1861685 1862770 D KEGG: nmu:Nmul_A0982 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1861685..1862770 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403776 YP_003166880.1 CDS CAP2UW1_1637 NC_013194.1 1862763 1863617 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: neu:NE1871 putative spermidine/putrescine transport system permease protein; binding-protein-dependent transport systems inner membrane component 1862763..1863617 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403777 YP_003166881.1 CDS CAP2UW1_1638 NC_013194.1 1863614 1864405 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0980 binding-protein-dependent transport systems inner membrane component; Ornithine carbamoyltransferase 1863614..1864405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403778 YP_003166882.1 CDS CAP2UW1_1639 NC_013194.1 1864414 1865481 D PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0979 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 1864414..1865481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403779 YP_003166883.1 CDS CAP2UW1_1640 NC_013194.1 1865561 1865968 R PFAM: PilT protein domain protein; KEGG: net:Neut_0071 PilT protein domain protein; PilT protein domain-containing protein complement(1865561..1865968) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403780 YP_003166884.1 CDS CAP2UW1_1641 NC_013194.1 1865946 1866155 R hypothetical protein complement(1865946..1866155) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403781 YP_003166885.1 CDS CAP2UW1_1645 NC_013194.1 1872702 1873682 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902; transposase IS111A/IS1328/IS1533 complement(1872702..1873682) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403785 YP_003166886.1 CDS CAP2UW1_1646 NC_013194.1 1874764 1876032 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_0223 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1874764..1876032 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403786 YP_003166887.1 CDS CAP2UW1_1647 NC_013194.1 1876055 1876756 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_2407 ABC transporter-related protein; ABC transporter 1876055..1876756 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403787 YP_003166888.1 CDS CAP2UW1_1648 NC_013194.1 1876782 1877939 D PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_2406 protein of unknown function DUF214; hypothetical protein 1876782..1877939 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403788 YP_003166889.1 CDS CAP2UW1_1649 NC_013194.1 1877946 1879115 D PFAM: protein of unknown function DUF214; KEGG: reh:H16_B2141 ABC-type transporter, permease component; hypothetical protein 1877946..1879115 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403789 YP_003166890.1 CDS CAP2UW1_1650 NC_013194.1 1879167 1879412 R hypothetical protein complement(1879167..1879412) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403790 YP_003166891.1 CDS CAP2UW1_1651 NC_013194.1 1879546 1880145 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1488 hypothetical protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1879546..1880145) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403791 YP_003166892.1 CDS CAP2UW1_1652 NC_013194.1 1880186 1882372 R KEGG: mpt:Mpe_A1489 putative ThiO:disulfide interchange protein; putative ThiO:disulfide interchange protein complement(1880186..1882372) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403792 YP_003166893.1 CDS CAP2UW1_1653 NC_013194.1 1882441 1882641 R hypothetical protein complement(1882441..1882641) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403793 YP_003166894.1 CDS CAP2UW1_1654 NC_013194.1 1882631 1882939 R PFAM: DNA polymerase beta domain protein region; KEGG: fal:FRAAL4454 putative nucleotidyltransferase; DNA polymerase beta domain-containing protein complement(1882631..1882939) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403794 YP_003166895.1 CDS CAP2UW1_1655 NC_013194.1 1883086 1883628 R PFAM: glutaredoxin; KEGG: mms:mma_3548 glutaredoxin family protein; glutaredoxin complement(1883086..1883628) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403795 YP_003166896.1 CDS CAP2UW1_1656 NC_013194.1 1883772 1884119 R PFAM: Tail Collar domain protein; protein of unknown function DUF1555; KEGG: pen:PSEEN0745 phage tail collar; Tail Collar domain-containing protein complement(1883772..1884119) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403796 YP_003166897.1 CDS CAP2UW1_1657 NC_013194.1 1884139 1884930 R KEGG: dar:Daro_0266 hypothetical protein; hypothetical protein complement(1884139..1884930) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403797 YP_003166898.1 CDS CAP2UW1_1658 NC_013194.1 1884957 1885469 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cti:RALTA_A0130 conserved hypothetical protein; YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated protein complement(1884957..1885469) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403798 YP_003166899.1 CDS CAP2UW1_1659 NC_013194.1 1885718 1886878 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: xau:Xaut_1346 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 1885718..1886878 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403799 YP_003166900.1 CDS CAP2UW1_1660 NC_013194.1 1886897 1888075 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_B2583 putative CaiB/BaiF family protein; L-carnitine dehydratase/bile acid-inducible protein F 1886897..1888075 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403800 YP_003166901.1 CDS CAP2UW1_1661 NC_013194.1 1888124 1888504 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: vei:Veis_2466 death-on-curing family protein; death-on-curing family protein complement(1888124..1888504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403801 YP_003166902.1 CDS CAP2UW1_1662 NC_013194.1 1888511 1888735 R TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: pna:Pnap_2222 putative addiction module antidote; addiction module antidote complement(1888511..1888735) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403802 YP_003166903.1 CDS CAP2UW1_1664 NC_013194.1 1889343 1889786 D hypothetical protein 1889343..1889786 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403804 YP_003166904.1 CDS CAP2UW1_1665 NC_013194.1 1889761 1890738 R PFAM: protein of unknown function DUF81; KEGG: cja:CJA_2354 domain of unknown function domain protein; hypothetical protein complement(1889761..1890738) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403805 YP_003166905.1 CDS CAP2UW1_1666 NC_013194.1 1890870 1891019 D hypothetical protein 1890870..1891019 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403806 YP_003166906.1 CDS CAP2UW1_1667 NC_013194.1 1891261 1891641 D KEGG: eba:ebA3984 carbamoyltransferase, NodU family; hypothetical protein 1891261..1891641 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403807 YP_003166907.1 CDS CAP2UW1_1668 NC_013194.1 1892208 1892732 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 1892208..1892732 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403808 YP_003166908.1 CDS CAP2UW1_1669 NC_013194.1 1892862 1894184 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 1892862..1894184 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403809 YP_003166909.1 CDS CAP2UW1_1670 NC_013194.1 1894187 1894981 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 1894187..1894981 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403810 YP_003166910.1 CDS CAP2UW1_1671 NC_013194.1 1894978 1895175 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 1894978..1895175 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403811 YP_003166911.1 CDS CAP2UW1_1672 NC_013194.1 1895955 1897316 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: azo:azo1234 probable transcriptional regulator; Fis family sigma-54 specific transcriptional regulator complement(1895955..1897316) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403812 YP_003166912.1 CDS CAP2UW1_1673 NC_013194.1 1897585 1898205 D KEGG: dar:Daro_0809 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1897585..1898205 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403813 YP_003166913.1 CDS CAP2UW1_1674 NC_013194.1 1898350 1898748 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: mgm:Mmc1_1941 nitrogen fixation-related protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein 1898350..1898748 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403814 YP_003166914.1 CDS CAP2UW1_1675 NC_013194.1 1898793 1899728 D PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_3609 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1898793..1899728 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403815 YP_003166915.1 CDS CAP2UW1_1676 NC_013194.1 1899764 1900072 D hypothetical protein 1899764..1900072 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403816 YP_003166916.1 CDS CAP2UW1_1677 NC_013194.1 1900160 1900996 D PFAM: protein of unknown function RIO1; KEGG: dar:Daro_1866 protein of unknown function RIO1; hypothetical protein 1900160..1900996 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403817 YP_003166917.1 CDS CAP2UW1_1678 NC_013194.1 1901132 1901632 R KEGG: sde:Sde_3819 hypothetical protein; hypothetical protein complement(1901132..1901632) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403818 YP_003166918.1 CDS CAP2UW1_1679 NC_013194.1 1901635 1901736 R hypothetical protein complement(1901635..1901736) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403819 YP_003166919.1 CDS CAP2UW1_1680 NC_013194.1 1901821 1902528 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_1079 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1901821..1902528) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403820 YP_003166920.1 CDS CAP2UW1_1681 NC_013194.1 1902892 1904421 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3558 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 1902892..1904421 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403821 YP_003166921.1 CDS CAP2UW1_1682 NC_013194.1 1904418 1905107 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_3557 response regulator receiver:transcriptional regulatory protein, C-terminal; winged helix family two component transcriptional regulator 1904418..1905107 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403822 YP_003166922.1 CDS CAP2UW1_1683 NC_013194.1 1905131 1907005 D PFAM: K potassium transporter; KEGG: dar:Daro_3556 K+ potassium transporter; K potassium transporter 1905131..1907005 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403823 YP_003166923.1 CDS CAP2UW1_1684 NC_013194.1 1906998 1909691 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor; osmosensitive K+ channel signal transduction histidine kinase complement(1906998..1909691) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403824 YP_003166924.1 CDS CAP2UW1_1685 NC_013194.1 1909688 1910653 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: dar:Daro_1081 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(1909688..1910653) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403825 YP_003166925.1 CDS CAP2UW1_1686 NC_013194.1 1910737 1911312 R One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(1910737..1911312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403826 YP_003166926.1 CDS CAP2UW1_1687 NC_013194.1 1911323 1913389 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(1911323..1913389) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403827 YP_003166927.1 CDS CAP2UW1_1688 NC_013194.1 1913406 1915217 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(1913406..1915217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403828 YP_003166928.1 CDS CAP2UW1_1689 NC_013194.1 1915214 1915306 R TIGRFAM: K+-transporting ATPase, F subunit; PFAM: K+transporting ATPase F subunit; K+-transporting ATPase subunit F complement(1915214..1915306) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403829 YP_003166929.1 CDS CAP2UW1_1690 NC_013194.1 1915303 1915398 R hypothetical protein complement(1915303..1915398) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403830 YP_003166930.1 CDS CAP2UW1_1691 NC_013194.1 1915637 1916446 D KEGG: cbe:Cbei_2587 collagen triple helix repeat; hypothetical protein 1915637..1916446 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403831 YP_003166931.1 CDS CAP2UW1_1692 NC_013194.1 1916606 1917277 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_A2352 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(1916606..1917277) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403832 YP_003166932.1 CDS CAP2UW1_1693 NC_013194.1 1917279 1917683 R KEGG: sdn:Sden_2243 hypothetical protein; hypothetical protein complement(1917279..1917683) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403833 YP_003166933.1 CDS CAP2UW1_1694 NC_013194.1 1917811 1918623 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afw:Anae109_3019 ABC transporter related; ABC transporter complement(1917811..1918623) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403834 YP_003166934.1 CDS CAP2UW1_1695 NC_013194.1 1918620 1919516 R TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpe:RPE_2048 phosphonate ABC transporter, inner membrane subunit; phosphonate ABC transporter permease complement(1918620..1919516) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403835 YP_003166935.1 CDS CAP2UW1_1696 NC_013194.1 1919513 1920388 R TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: bbt:BBta_3379 putative phosphonate transport system binding protein HtxB precursor PhnD; phosphonate ABC transporter substrate-binding protein complement(1919513..1920388) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403836 YP_003166936.1 CDS CAP2UW1_1697 NC_013194.1 1920684 1921325 D KEGG: ade:Adeh_0244 LigA; hypothetical protein 1920684..1921325 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403837 YP_003166937.1 CDS CAP2UW1_1698 NC_013194.1 1921451 1921828 D PFAM: protein of unknown function DUF891; KEGG: rpt:Rpal_4351 protein of unknown function DUF891; hypothetical protein 1921451..1921828 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403838 YP_003166938.1 CDS CAP2UW1_1699 NC_013194.1 1921812 1922147 D KEGG: mar:MAE_29420 transcriptional regulator; transcriptional regulator 1921812..1922147 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403839 YP_003166939.1 CDS CAP2UW1_1700 NC_013194.1 1922162 1922317 R hypothetical protein complement(1922162..1922317) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403840 YP_003166940.1 CDS CAP2UW1_1701 NC_013194.1 1922500 1923978 R KEGG: sus:Acid_1790 ABC-1 domain protein; ABC transporter complement(1922500..1923978) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403841 YP_003166941.1 CDS CAP2UW1_1702 NC_013194.1 1924143 1924763 R PFAM: regulatory protein TetR; KEGG: dar:Daro_2159 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1924143..1924763) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403842 YP_003166942.1 CDS CAP2UW1_1703 NC_013194.1 1924902 1926020 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_2160 secretion protein HlyD; RND family efflux transporter MFP subunit 1924902..1926020 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403843 YP_003166943.1 CDS CAP2UW1_1704 NC_013194.1 1926030 1929155 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2161 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1926030..1929155 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403844 YP_003166944.1 CDS CAP2UW1_1705 NC_013194.1 1929157 1930593 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_2162 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system, outer membrane lipoprotein 1929157..1930593 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403845 YP_003166945.1 CDS CAP2UW1_1706 NC_013194.1 1930747 1931619 D PFAM: Metal-dependent hydrolase HDOD; KEGG: gsu:GSU2576 HD domain protein; putative signal transduction protein 1930747..1931619 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403846 YP_003166946.1 CDS CAP2UW1_1707 NC_013194.1 1931746 1934502 D KEGG: ppd:Ppro_0406 hypothetical protein; hypothetical protein 1931746..1934502 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403847 YP_003166947.1 CDS CAP2UW1_1708 NC_013194.1 1934971 1936455 D PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: ttj:TTHA0432 IMP dehydrogenase/GMP reductase; Malate dehydrogenase 1934971..1936455 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403848 YP_003166948.1 CDS CAP2UW1_1709 NC_013194.1 1937033 1938874 D PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; transposase IS4 family protein 1937033..1938874 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403849 YP_003166949.1 CDS CAP2UW1_1710 NC_013194.1 1939058 1939741 R KEGG: glo:Glov_2583 hypothetical protein; hypothetical protein complement(1939058..1939741) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403850 YP_003166950.1 CDS CAP2UW1_1711 NC_013194.1 1939776 1941146 R hypothetical protein complement(1939776..1941146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403851 YP_003166951.1 CDS CAP2UW1_1713 NC_013194.1 1941558 1942586 D KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein 1941558..1942586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403853 YP_003166952.1 CDS CAP2UW1_1714 NC_013194.1 1942592 1943026 R KEGG: psa:PST_0577 hypothetical protein; hypothetical protein complement(1942592..1943026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403854 YP_003166953.1 CDS CAP2UW1_1715 NC_013194.1 1943032 1943151 D hypothetical protein 1943032..1943151 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403855 YP_003166954.1 CDS CAP2UW1_1716 NC_013194.1 1943437 1945203 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ade:Adeh_4118 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1943437..1945203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403856 YP_003166955.1 CDS CAP2UW1_1717 NC_013194.1 1945486 1945725 D KEGG: bbt:BBta_p0081 hypothetical protein; hypothetical protein 1945486..1945725 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403857 YP_003166956.1 CDS CAP2UW1_1718 NC_013194.1 1945851 1947377 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 1945851..1947377 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403858 YP_003166957.1 CDS CAP2UW1_1719 NC_013194.1 1947433 1948236 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein 1947433..1948236 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403859 YP_003166958.1 CDS CAP2UW1_1720 NC_013194.1 1948587 1948814 D KEGG: bja:bll7553 hypothetical protein; hypothetical protein 1948587..1948814 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403860 YP_003166959.1 CDS CAP2UW1_1722 NC_013194.1 1949264 1949635 R hypothetical protein complement(1949264..1949635) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403862 YP_003166960.1 CDS CAP2UW1_1723 NC_013194.1 1949860 1950561 R PFAM: Pirin domain protein; KEGG: ajs:Ajs_1985 pirin domain protein; Pirin domain-containing protein complement(1949860..1950561) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403863 YP_003166961.1 CDS CAP2UW1_1724 NC_013194.1 1950591 1951187 R PFAM: YceI family protein; KEGG: dar:Daro_2796 YceI; YceI family protein complement(1950591..1951187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403864 YP_003166962.1 CDS CAP2UW1_1725 NC_013194.1 1951214 1951777 R PFAM: YceI family protein; KEGG: dar:Daro_2795 YceI; YceI family protein complement(1951214..1951777) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403865 YP_003166963.1 CDS CAP2UW1_1726 NC_013194.1 1951779 1952321 R PFAM: cytochrome B561; KEGG: dar:Daro_2794 cytochrome b561, bacterial; cytochrome B561 complement(1951779..1952321) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403866 YP_003166964.1 CDS CAP2UW1_1727 NC_013194.1 1952318 1953127 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: dar:Daro_2793 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; Extradiol ring-cleavage dioxygenase class III protein subunit B complement(1952318..1953127) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403867 YP_003166965.1 CDS CAP2UW1_1728 NC_013194.1 1953223 1954110 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2792 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator 1953223..1954110 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403868 YP_003166966.1 CDS CAP2UW1_1729 NC_013194.1 1954124 1954930 R PFAM: protein of unknown function DUF1223; KEGG: bmn:BMA10247_0484 hypothetical protein; hypothetical protein complement(1954124..1954930) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403869 YP_003166967.1 CDS CAP2UW1_1731 NC_013194.1 1955582 1956565 D PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: amr:AM1_2563 hypothetical protein; hypothetical protein 1955582..1956565 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403871 YP_003166968.1 CDS CAP2UW1_1732 NC_013194.1 1956562 1957254 D hypothetical protein 1956562..1957254 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403872 YP_003166969.1 CDS CAP2UW1_1733 NC_013194.1 1957518 1958519 D KEGG: bba:Bd2513 putative phosphodiesterase/alkaline phosphatase D; phosphodiesterase/alkaline phosphatase D-like protein 1957518..1958519 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403873 YP_003166970.1 CDS CAP2UW1_1734 NC_013194.1 1958757 1959701 D KEGG: sbm:Shew185_4115 hypothetical protein; hypothetical protein 1958757..1959701 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403874 YP_003166971.1 CDS CAP2UW1_1735 NC_013194.1 1959729 1960793 R PFAM: beta-lactamase domain protein; Rhodanese domain protein; KEGG: pol:Bpro_4842 beta-lactamase-like; beta-lactamase domain-containing protein complement(1959729..1960793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403875 YP_003166972.1 CDS CAP2UW1_1736 NC_013194.1 1961119 1962783 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: aeh:Mlg_1307 sulfate transporter; sulfate transporter 1961119..1962783 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403876 YP_003166973.1 CDS CAP2UW1_1737 NC_013194.1 1962855 1963022 R hypothetical protein complement(1962855..1963022) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403877 YP_003166974.1 CDS CAP2UW1_1738 NC_013194.1 1963647 1964750 D PFAM: transposase IS4 family protein; KEGG: cti:RALTA_p0602 putative transposase, IS4 family; transposase IS4 family protein 1963647..1964750 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403878 YP_003166975.1 CDS CAP2UW1_1740 NC_013194.1 1965333 1965941 D KEGG: rpe:RPE_2640 hypothetical protein; hypothetical protein 1965333..1965941 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403880 YP_003166976.1 CDS CAP2UW1_1741 NC_013194.1 1966083 1967195 D PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rpe:RPE_2641 ATPase AAA-2 domain protein; ATPase AAA-2 domain-containing protein 1966083..1967195 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403881 YP_003166977.1 CDS CAP2UW1_1742 NC_013194.1 1967199 1968653 D KEGG: ppd:Ppro_0939 hypothetical protein; hypothetical protein 1967199..1968653 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403882 YP_003166978.1 CDS CAP2UW1_1743 NC_013194.1 1968730 1968843 D hypothetical protein 1968730..1968843 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403883 YP_003166979.1 CDS CAP2UW1_1744 NC_013194.1 1969326 1970762 D KEGG: sus:Acid_6364 hypothetical protein; hypothetical protein 1969326..1970762 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403884 YP_003166980.1 CDS CAP2UW1_1745 NC_013194.1 1971011 1971634 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: dar:Daro_0686 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator complement(1971011..1971634) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403885 YP_003166981.1 CDS CAP2UW1_1746 NC_013194.1 1971624 1973207 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MASE1 domain protein; KEGG: dar:Daro_0685 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase complement(1971624..1973207) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403886 YP_003166982.1 CDS CAP2UW1_1747 NC_013194.1 1973474 1974349 D TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cts:Ctha_0917 phosphate binding protein; phosphate-binding protein 1973474..1974349 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403887 YP_003166983.1 CDS CAP2UW1_1748 NC_013194.1 1974429 1975493 D PFAM: PhoU family protein; KEGG: aba:Acid345_2971 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 1974429..1975493 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403888 YP_003166984.1 CDS CAP2UW1_1749 NC_013194.1 1975495 1976445 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cts:Ctha_0918 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 1975495..1976445 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403889 YP_003166985.1 CDS CAP2UW1_1750 NC_013194.1 1976449 1977339 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cts:Ctha_0919 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1976449..1977339 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403890 YP_003166986.1 CDS CAP2UW1_1751 NC_013194.1 1977357 1978145 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_0920 ABC transporter-related protein; ABC transporter 1977357..1978145 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403891 YP_003166987.1 CDS CAP2UW1_1752 NC_013194.1 1978230 1979036 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cts:Ctha_0921 ABC transporter-related protein; ABC transporter 1978230..1979036 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403892 YP_003166988.1 CDS CAP2UW1_1753 NC_013194.1 1979248 1979694 R PFAM: Ion transport 2 domain protein; KEGG: shn:Shewana3_2914 ion transport 2 domain protein; Ion transport 2 domain-containing protein complement(1979248..1979694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403893 YP_003166989.1 CDS CAP2UW1_1755 NC_013194.1 1980741 1981883 R PFAM: secretion protein HlyD family protein; KEGG: reu:Reut_A1739 secretion protein HlyD; secretion protein HlyD family protein complement(1980741..1981883) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403895 YP_003166990.1 CDS CAP2UW1_1756 NC_013194.1 1981880 1983445 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: shm:Shewmr7_2820 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system, outer membrane lipoprotein complement(1981880..1983445) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403896 YP_003166991.1 CDS CAP2UW1_1757 NC_013194.1 1983450 1984583 R PFAM: protein of unknown function UPF0118; KEGG: sfu:Sfum_0593 protein of unknown function UPF0118; hypothetical protein complement(1983450..1984583) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403897 YP_003166992.1 CDS CAP2UW1_1758 NC_013194.1 1984681 1985463 R KEGG: kra:Krad_2698 major facilitator superfamily MFS_1; hypothetical protein complement(1984681..1985463) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403898 YP_003166993.1 CDS CAP2UW1_1759 NC_013194.1 1985524 1985796 D hypothetical protein 1985524..1985796 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403899 YP_003166994.1 CDS CAP2UW1_1760 NC_013194.1 1986075 1986821 D KEGG: fra:Francci3_2176 hypothetical protein; hypothetical protein 1986075..1986821 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403900 YP_003166995.1 CDS CAP2UW1_1761 NC_013194.1 1987267 1987941 R PFAM: conserved hypothetical protein; KEGG: slo:Shew_2727 hypothetical protein; hypothetical protein complement(1987267..1987941) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403901 YP_003166996.1 CDS CAP2UW1_1762 NC_013194.1 1988127 1989737 R PFAM: magnesium chelatase ChlI subunit; sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rso:RSc0222 probable sigma-54 interacting transcription regulator protein; Sigma 54 interacting domain-containing protein complement(1988127..1989737) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403902 YP_003166997.1 CDS CAP2UW1_1763 NC_013194.1 1990393 1991532 D PFAM: band 7 protein; KEGG: bch:Bcen2424_3693 band 7 protein; hypothetical protein 1990393..1991532 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403904 YP_003166998.1 CDS CAP2UW1_1764 NC_013194.1 1991642 1992883 D PFAM: protein of unknown function UPF0027; KEGG: rso:RSc0224 RtcB protein; hypothetical protein 1991642..1992883 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403905 YP_003166999.1 CDS CAP2UW1_1765 NC_013194.1 1993110 1994183 D catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 1993110..1994183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403906 YP_003167000.1 CDS CAP2UW1_1766 NC_013194.1 1994362 1994886 D PFAM: amino acid-binding ACT domain protein; KEGG: eba:ebA6107 glycine cleavage system regulatory protein; amino acid-binding ACT domain-containing protein 1994362..1994886 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403907 YP_003167001.1 CDS CAP2UW1_1767 NC_013194.1 1995120 1998674 D KEGG: cyt:cce_3035 hypothetical protein; hypothetical protein 1995120..1998674 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403908 YP_003167002.1 CDS CAP2UW1_1768 NC_013194.1 1998914 1999474 D hypothetical protein 1998914..1999474 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403909 YP_003167003.1 CDS CAP2UW1_1769 NC_013194.1 1999831 2000091 D KEGG: xcv:XCVd0102 hypothetical protein; hypothetical protein 1999831..2000091 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403910 YP_003167004.1 CDS CAP2UW1_1770 NC_013194.1 2000088 2000546 D PFAM: PilT protein domain protein; KEGG: xac:XACb0059 virulence associated protein; PilT protein domain-containing protein 2000088..2000546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403911 YP_003167005.1 CDS CAP2UW1_1772 NC_013194.1 2001106 2002041 R PFAM: transposase IS4 family protein; KEGG: amt:Amet_0246 hypothetical protein; transposase IS4 family protein complement(2001106..2002041) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403913 YP_003167006.1 CDS CAP2UW1_1773 NC_013194.1 2002429 2002836 R hypothetical protein complement(2002429..2002836) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403914 YP_003167007.1 CDS CAP2UW1_1774 NC_013194.1 2003115 2003549 D KEGG: psa:PST_0577 hypothetical protein; hypothetical protein 2003115..2003549 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403915 YP_003167008.1 CDS CAP2UW1_1775 NC_013194.1 2003555 2004583 R KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein complement(2003555..2004583) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403916 YP_003167009.1 CDS CAP2UW1_1776 NC_013194.1 2004963 2005487 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 2004963..2005487 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403917 YP_003167010.1 CDS CAP2UW1_1777 NC_013194.1 2005617 2006939 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 2005617..2006939 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403918 YP_003167011.1 CDS CAP2UW1_1778 NC_013194.1 2006942 2007736 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 2006942..2007736 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403919 YP_003167012.1 CDS CAP2UW1_1779 NC_013194.1 2007733 2007930 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 2007733..2007930 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403920 YP_003167013.1 CDS CAP2UW1_1780 NC_013194.1 2008128 2008634 D KEGG: amr:AM1_A0239 hypothetical protein; hypothetical protein 2008128..2008634 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403921 YP_003167014.1 CDS CAP2UW1_1782 NC_013194.1 2009111 2009587 R PFAM: protein of unknown function DUF1555; KEGG: dar:Daro_2746 hypothetical protein; hypothetical protein complement(2009111..2009587) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403923 YP_003167015.1 CDS CAP2UW1_1783 NC_013194.1 2009890 2010126 R hypothetical protein complement(2009890..2010126) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403924 YP_003167016.1 CDS CAP2UW1_1785 NC_013194.1 2011176 2011454 R hypothetical protein complement(2011176..2011454) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403926 YP_003167017.1 CDS CAP2UW1_1786 NC_013194.1 2011435 2011821 R KEGG: bay:RBAM_011800 YjcA; hypothetical protein complement(2011435..2011821) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403927 YP_003167018.1 CDS CAP2UW1_1787 NC_013194.1 2011837 2014080 R KEGG: sen:SACE_5533 hypothetical protein; hypothetical protein complement(2011837..2014080) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403928 YP_003167019.1 CDS CAP2UW1_1788 NC_013194.1 2014418 2015296 R PFAM: electron transport protein SCO1/SenC; Redoxin domain protein; KEGG: mag:amb2224 uncharacterized protein SCO1/SenC/PrrC; electron transport protein SCO1/SenC complement(2014418..2015296) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403929 YP_003167020.1 CDS CAP2UW1_1789 NC_013194.1 2015320 2016216 R TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mag:amb2223 polyprenyltransferase; protoheme IX farnesyltransferase complement(2015320..2016216) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403930 YP_003167021.1 CDS CAP2UW1_1790 NC_013194.1 2016353 2018047 R PFAM: cytochrome c oxidase subunit I; KEGG: mag:amb2222 heme/copper-type cytochrome/quinol oxidase, subunit 1; cytochrome c oxidase subunit I complement(2016353..2018047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403931 YP_003167022.1 CDS CAP2UW1_1791 NC_013194.1 2018064 2018603 R PFAM: cytochrome c oxidase subunit II; KEGG: mag:amb2221 heme/copper-type cytochrome/quinol oxidase, subunit 2; cytochrome c oxidase subunit II complement(2018064..2018603) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403932 YP_003167023.1 CDS CAP2UW1_1792 NC_013194.1 2018634 2018783 R KEGG: mag:amb2220 hypothetical protein; hypothetical protein complement(2018634..2018783) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403933 YP_003167024.1 CDS CAP2UW1_1793 NC_013194.1 2019088 2020137 D PFAM: cytochrome oxidase assembly; KEGG: nmu:Nmul_A1204 cytochrome oxidase assembly; cytochrome oxidase assembly 2019088..2020137 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403934 YP_003167025.1 CDS CAP2UW1_1794 NC_013194.1 2020134 2021060 D PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly; cytochrome oxidase assembly 2020134..2021060 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403935 YP_003167026.1 CDS CAP2UW1_1795 NC_013194.1 2021142 2021612 R PFAM: protein of unknown function DUF461; KEGG: azo:azo2153 conserved hypothetical secreted protein; hypothetical protein complement(2021142..2021612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403936 YP_003167027.1 CDS CAP2UW1_1796 NC_013194.1 2021711 2022142 R KEGG: aeh:Mlg_0868 hypothetical protein; hypothetical protein complement(2021711..2022142) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403937 YP_003167028.1 CDS CAP2UW1_1797 NC_013194.1 2022161 2022742 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: azo:azo3293 SCO1/SenC family protein; electron transport protein SCO1/SenC complement(2022161..2022742) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403938 YP_003167029.1 CDS CAP2UW1_1798 NC_013194.1 2023488 2024063 D PFAM: Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron; Group II intron maturase-specific domain-containing protein 2023488..2024063 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403939 YP_003167030.1 CDS CAP2UW1_1799 NC_013194.1 2024132 2024551 R PFAM: protein of unknown function DUF1486; KEGG: abu:Abu_2016 hypothetical protein; hypothetical protein complement(2024132..2024551) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403940 YP_003167031.1 CDS CAP2UW1_1800 NC_013194.1 2024644 2025126 R hypothetical protein complement(2024644..2025126) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403941 YP_003167032.1 CDS CAP2UW1_1801 NC_013194.1 2025217 2026521 R KEGG: sde:Sde_3437 esterase/lipase/thioesterase family active site; hypothetical protein complement(2025217..2026521) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403942 YP_003167033.1 CDS CAP2UW1_1803 NC_013194.1 2027560 2028648 D PFAM: Integrase catalytic region; KEGG: eba:p2A281 transposase; integrase catalytic subunit 2027560..2028648 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403944 YP_003167034.1 CDS CAP2UW1_1804 NC_013194.1 2028645 2029430 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein 2028645..2029430 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403945 YP_003167035.1 CDS CAP2UW1_1805 NC_013194.1 2030716 2031408 R PFAM: FRG domain protein; KEGG: bch:Bcen2424_6542 hypothetical protein; FRG domain-containing protein complement(2030716..2031408) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403946 YP_003167036.1 CDS CAP2UW1_1806 NC_013194.1 2031445 2031744 R KEGG: lch:Lcho_2331 hypothetical protein; hypothetical protein complement(2031445..2031744) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403947 YP_003167037.1 CDS CAP2UW1_1807 NC_013194.1 2031752 2031955 R KEGG: syn:ssl2064 hypothetical protein; hypothetical protein complement(2031752..2031955) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403948 YP_003167038.1 CDS CAP2UW1_1808 NC_013194.1 2032035 2032517 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: lch:Lcho_3125 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein complement(2032035..2032517) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403949 YP_003167039.1 CDS CAP2UW1_1809 NC_013194.1 2032653 2033036 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sml:Smlt3382 putative glyoxyalase/bleomycin resistance protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(2032653..2033036) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403950 YP_003167040.1 CDS CAP2UW1_1810 NC_013194.1 2033246 2034163 D PFAM: integrase family protein; KEGG: sdn:Sden_1137 phage integrase; integrase family protein 2033246..2034163 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403951 YP_003167041.1 CDS CAP2UW1_1811 NC_013194.1 2034160 2035266 D PFAM: putative transposase; KEGG: sdn:Sden_1136 transposase; putative transposase 2034160..2035266 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403952 YP_003167042.1 CDS CAP2UW1_1812 NC_013194.1 2035763 2036287 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 2035763..2036287 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403953 YP_003167043.1 CDS CAP2UW1_1813 NC_013194.1 2036417 2037739 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 2036417..2037739 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403954 YP_003167044.1 CDS CAP2UW1_1814 NC_013194.1 2037742 2038536 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 2037742..2038536 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403955 YP_003167045.1 CDS CAP2UW1_1815 NC_013194.1 2038533 2038730 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 2038533..2038730 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403956 YP_003167046.1 CDS CAP2UW1_1816 NC_013194.1 2038792 2039241 R hypothetical protein complement(2038792..2039241) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403957 YP_003167047.1 CDS CAP2UW1_1817 NC_013194.1 2039340 2039450 R hypothetical protein complement(2039340..2039450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403958 YP_003167048.1 CDS CAP2UW1_1818 NC_013194.1 2039437 2040666 R KEGG: pth:PTH_2442 hypothetical protein; hypothetical protein complement(2039437..2040666) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403959 YP_003167049.1 CDS CAP2UW1_1819 NC_013194.1 2041301 2042662 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron; RNA-directed DNA polymerase 2041301..2042662 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403960 YP_003167050.1 CDS CAP2UW1_1820 NC_013194.1 2043144 2043830 R KEGG: rsp:RSP_1963 hypothetical protein; hypothetical protein complement(2043144..2043830) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403961 YP_003167051.1 CDS CAP2UW1_1821 NC_013194.1 2043855 2044211 R hypothetical protein complement(2043855..2044211) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403962 YP_003167052.1 CDS CAP2UW1_1822 NC_013194.1 2044351 2045373 D TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: mfa:Mfla_0410 integron integrase; integron integrase 2044351..2045373 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403963 YP_003167053.1 CDS CAP2UW1_1823 NC_013194.1 2046031 2047743 D PFAM: surface antigen (D15); KEGG: dar:Daro_0462 surface antigen (D15); surface antigen (D15) 2046031..2047743 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403964 YP_003167054.1 CDS CAP2UW1_1824 NC_013194.1 2047740 2051849 D PFAM: protein of unknown function DUF490; KEGG: azo:azo3321 hypothetical protein; hypothetical protein 2047740..2051849 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403965 YP_003167055.1 CDS CAP2UW1_1825 NC_013194.1 2051846 2052922 D PFAM: Radical SAM domain protein; KEGG: sil:SPO2159 radical SAM domain protein; Radical SAM domain-containing protein 2051846..2052922 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403966 YP_003167056.1 CDS CAP2UW1_1826 NC_013194.1 2052949 2055279 R PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; SMART: Peptidase C14, caspase precursor p45, core; KEGG: glo:Glov_1080 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 complement(2052949..2055279) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403967 YP_003167057.1 CDS CAP2UW1_1827 NC_013194.1 2055383 2056441 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: dar:Daro_0452 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein complement(2055383..2056441) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403968 YP_003167058.1 CDS CAP2UW1_1828 NC_013194.1 2056431 2057588 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(2056431..2057588) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403969 YP_003167059.1 CDS CAP2UW1_1829 NC_013194.1 2057692 2058189 R KEGG: dar:Daro_0449 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(2057692..2058189) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403970 YP_003167060.1 CDS CAP2UW1_1830 NC_013194.1 2058189 2059040 R PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: dar:Daro_0448 methenyltetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase complement(2058189..2059040) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403971 YP_003167061.1 CDS CAP2UW1_1831 NC_013194.1 2059093 2059728 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta complement(2059093..2059728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403972 YP_003167062.1 CDS CAP2UW1_1832 NC_013194.1 2059753 2061657 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: dar:Daro_0446 4Fe-4S ferredoxin, iron-sulfur binding:thiamine pyrophosphate enzyme, C-terminal TPP-binding; thiamine pyrophosphate TPP-binding domain-containing protein complement(2059753..2061657) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403973 YP_003167063.1 CDS CAP2UW1_1834 NC_013194.1 2062928 2063833 R PFAM: extracellular solute-binding protein family 3; KEGG: bxe:Bxe_A0597 ABC glutamate/aspartate transporter, periplasmic ligand binding protein; family 3 extracellular solute-binding protein complement(2062928..2063833) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403975 YP_003167064.1 CDS CAP2UW1_1835 NC_013194.1 2064026 2065441 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sun:SUN_0974 oxoglutarate:malate translocator; anion transporter complement(2064026..2065441) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403976 YP_003167065.1 CDS CAP2UW1_1836 NC_013194.1 2065438 2066037 R KEGG: sfu:Sfum_0587 hypothetical protein; hypothetical protein complement(2065438..2066037) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403977 YP_003167066.1 CDS CAP2UW1_1837 NC_013194.1 2066313 2066756 R PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA; UspA domain-containing protein complement(2066313..2066756) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403978 YP_003167067.1 CDS aceE NC_013194.1 2067272 2069965 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 2067272..2069965 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403979 YP_003167068.1 CDS CAP2UW1_1839 NC_013194.1 2069978 2071624 D KEGG: dar:Daro_0441 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; dihydrolipoamide acetyltransferase 2069978..2071624 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403980 YP_003167069.1 CDS CAP2UW1_1840 NC_013194.1 2071638 2073386 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bja:blr3722 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2071638..2073386 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403981 YP_003167070.1 CDS CAP2UW1_1841 NC_013194.1 2073917 2074678 D PFAM: lipopolysaccharide kinase; KEGG: azo:azo3569 lipopolysaccharide core biosynthesis protein; lipopolysaccharide kinase 2073917..2074678 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403982 YP_003167071.1 CDS CAP2UW1_1842 NC_013194.1 2075253 2075909 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: abo:ABO_1997 hypothetical protein; type 11 methyltransferase 2075253..2075909 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403983 YP_003167072.1 CDS CAP2UW1_1843 NC_013194.1 2075932 2076777 D PFAM: lipopolysaccharide kinase; KEGG: pap:PSPA7_5743 hypothetical protein; Mn2+-dependent serine/threonine protein kinase 2075932..2076777 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403984 YP_003167073.1 CDS CAP2UW1_1845 NC_013194.1 2077230 2077709 R KEGG: mlo:mll1962 hypothetical protein; hypothetical protein complement(2077230..2077709) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403986 YP_003167074.1 CDS CAP2UW1_1846 NC_013194.1 2077911 2079293 D PFAM: Protein of unknown function DUF676 hydrolase domain protein; KEGG: spl:Spea_3739 PGAP1 family protein; hypothetical protein 2077911..2079293 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403987 YP_003167075.1 CDS CAP2UW1_1847 NC_013194.1 2079271 2081688 D PFAM: TPR repeat-containing protein; SEC-C motif domain protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rru:Rru_A2859 hypothetical protein; SEC-C motif domain-containing protein 2079271..2081688 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403988 YP_003167076.1 CDS CAP2UW1_1848 NC_013194.1 2081815 2083830 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: hch:HCH_04875 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2081815..2083830 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403989 YP_003167077.1 CDS CAP2UW1_1849 NC_013194.1 2083906 2084586 D response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 2083906..2084586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403990 YP_003167078.1 CDS CAP2UW1_1850 NC_013194.1 2084594 2086030 D part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 2084594..2086030 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403991 YP_003167079.1 CDS CAP2UW1_1851 NC_013194.1 2086124 2087476 D PFAM: Inner membrane CreD family protein; KEGG: dar:Daro_3179 hypothetical protein; hypothetical protein 2086124..2087476 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403992 YP_003167080.1 CDS CAP2UW1_1852 NC_013194.1 2087486 2088931 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: azo:azo0701 putative beta-hexosaminidase; beta-N-acetylhexosaminidase 2087486..2088931 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403993 YP_003167081.1 CDS CAP2UW1_1853 NC_013194.1 2089063 2089833 D KEGG: dar:Daro_3162 putative lipoprotein; putative lipoprotein 2089063..2089833 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403994 YP_003167082.1 CDS CAP2UW1_1854 NC_013194.1 2089929 2091974 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_1548 Hpt sensor hybrid histidine kinase; integral membrane sensor hybrid histidine kinase complement(2089929..2091974) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403995 YP_003167083.1 CDS CAP2UW1_1855 NC_013194.1 2091981 2092793 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: glo:Glov_1547 extracellular solute-binding protein family 1; molybdenum ABC transporter substrate-binding protein complement(2091981..2092793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403996 YP_003167084.1 CDS CAP2UW1_1856 NC_013194.1 2092954 2093172 D hypothetical protein 2092954..2093172 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403997 YP_003167085.1 CDS CAP2UW1_1857 NC_013194.1 2093184 2095106 D PFAM: K potassium transporter; KEGG: eba:ebA3621 potassium uptake protein; K potassium transporter 2093184..2095106 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403998 YP_003167086.1 CDS CAP2UW1_1858 NC_013194.1 2095187 2095744 D PFAM: phospholipid/glycerol acyltransferase; KEGG: dar:Daro_0677 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2095187..2095744 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403999 YP_003167087.1 CDS CAP2UW1_1859 NC_013194.1 2095843 2096934 D PFAM: Acetyl xylan esterase; KEGG: mgm:Mmc1_2518 acetyl xylan esterase; Acetyl xylan esterase 2095843..2096934 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404000 YP_003167088.1 CDS CAP2UW1_1860 NC_013194.1 2097093 2099000 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2097093..2099000 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404001 YP_003167089.1 CDS CAP2UW1_1861 NC_013194.1 2099218 2100441 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1885 major facilitator superfamily MFS_1; major facilitator superfamily protein 2099218..2100441 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404002 YP_003167090.1 CDS CAP2UW1_1862 NC_013194.1 2100673 2102013 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: rfr:Rfer_3576 anaerobic C4-dicarboxylate membrane transporter family protein; anaerobic c4-dicarboxylate antiporter, Dcu family 2100673..2102013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404003 YP_003167091.1 CDS CAP2UW1_1863 NC_013194.1 2102117 2102896 R KEGG: amr:AM1_E0023 hypothetical protein; hypothetical protein complement(2102117..2102896) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404004 YP_003167092.1 CDS CAP2UW1_1864 NC_013194.1 2103198 2103785 D PFAM: nitroreductase; KEGG: bbr:BB3252 hypothetical protein; hypothetical protein 2103198..2103785 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404005 YP_003167093.1 CDS CAP2UW1_1865 NC_013194.1 2103966 2104508 R KEGG: tbd:Tbd_1778 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2103966..2104508) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404006 YP_003167094.1 CDS CAP2UW1_1866 NC_013194.1 2104568 2105482 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tbd:Tbd_1779 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2104568..2105482) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404007 YP_003167095.1 CDS CAP2UW1_1868 NC_013194.1 2106621 2107259 D KEGG: sde:Sde_3920 helix-turn-helix, AraC type; hypothetical protein 2106621..2107259 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404010 YP_003167096.1 CDS CAP2UW1_1869 NC_013194.1 2107597 2107923 R KEGG: ppp:PHYPADRAFT_103914 hypothetical protein Pfam: GRP SLH PROSITE: GLY_RICH SLH; hypothetical protein complement(2107597..2107923) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404011 YP_003167097.1 CDS CAP2UW1_1870 NC_013194.1 2108149 2108376 R KEGG: dol:Dole_2934 hypothetical protein; hypothetical protein complement(2108149..2108376) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404012 YP_003167098.1 CDS CAP2UW1_1871 NC_013194.1 2108373 2111531 R KEGG: bxe:Bxe_A0222 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease complement(2108373..2111531) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404013 YP_003167099.1 CDS CAP2UW1_1872 NC_013194.1 2111528 2112862 R PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3010 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein-containing protein complement(2111528..2112862) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404014 YP_003167100.1 CDS CAP2UW1_1873 NC_013194.1 2112852 2114399 R PFAM: N-6 DNA methylase; KEGG: bxe:Bxe_A0224 type I restriction-modification system, M subunit; N-6 DNA methylase complement(2112852..2114399) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404015 YP_003167101.1 CDS CAP2UW1_1874 NC_013194.1 2115107 2115376 D hypothetical protein 2115107..2115376 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404016 YP_003167102.1 CDS CAP2UW1_1875 NC_013194.1 2115369 2115602 D hypothetical protein 2115369..2115602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404017 YP_003167103.1 CDS CAP2UW1_1876 NC_013194.1 2115599 2115781 D hypothetical protein 2115599..2115781 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404018 YP_003167104.1 CDS CAP2UW1_1877 NC_013194.1 2115778 2116053 D hypothetical protein 2115778..2116053 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404019 YP_003167105.1 CDS CAP2UW1_1879 NC_013194.1 2118687 2119181 R KEGG: tbd:Tbd_1967 hypothetical protein; hypothetical protein complement(2118687..2119181) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404021 YP_003167106.1 CDS CAP2UW1_1880 NC_013194.1 2119236 2119679 R KEGG: rpb:RPB_3480 hypothetical protein; hypothetical protein complement(2119236..2119679) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404022 YP_003167107.1 CDS CAP2UW1_1881 NC_013194.1 2119755 2120723 R PFAM: transposase IS4 family protein; KEGG: bvi:Bcep1808_6178 transposase, IS4 family protein; transposase IS4 family protein complement(2119755..2120723) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404023 YP_003167108.1 CDS CAP2UW1_1882 NC_013194.1 2120823 2122436 R KEGG: xau:Xaut_2247 hypothetical protein; hypothetical protein complement(2120823..2122436) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404024 YP_003167109.1 CDS CAP2UW1_1883 NC_013194.1 2122571 2123533 R PFAM: 5-nucleotidase; KEGG: maq:Maqu_1307 5-nucleotidase; 5'-nucleotidase complement(2122571..2123533) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404025 YP_003167110.1 CDS CAP2UW1_1884 NC_013194.1 2124178 2126829 R PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lch:Lcho_2129 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2124178..2126829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404026 YP_003167111.1 CDS CAP2UW1_1885 NC_013194.1 2126853 2127326 R PFAM: cyclic nucleotide-binding; KEGG: acr:Acry_2102 putative transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein complement(2126853..2127326) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404027 YP_003167112.1 CDS CAP2UW1_1886 NC_013194.1 2127514 2129187 R TIGRFAM: type VI secretion system FHA domain protein; PFAM: Forkhead-associated protein; KEGG: bja:blr3598 hypothetical protein; FHA domain-containing protein complement(2127514..2129187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404028 YP_003167113.1 CDS CAP2UW1_1887 NC_013194.1 2129666 2131171 D PFAM: putative phosphatase regulatory subunit; Endonuclease/exonuclease/phosphatase; KEGG: ssa:SSA_1808 hypothetical protein; Endonuclease/exonuclease/phosphatase 2129666..2131171 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404029 YP_003167114.1 CDS CAP2UW1_1888 NC_013194.1 2131251 2132843 D SMART: phospholipase D/Transphosphatidylase; KEGG: cbk:CLL_A2174 starch binding domain protein; phospholipase D/transphosphatidylase 2131251..2132843 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404030 YP_003167115.1 CDS CAP2UW1_1889 NC_013194.1 2132864 2134555 D PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2283 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2132864..2134555 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404031 YP_003167116.1 CDS CAP2UW1_1890 NC_013194.1 2134592 2136004 R KEGG: mta:Moth_1867 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(2134592..2136004) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404032 YP_003167117.1 CDS CAP2UW1_1891 NC_013194.1 2136298 2137320 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: npu:Npun_AR200 alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(2136298..2137320) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404033 YP_003167118.1 CDS CAP2UW1_1892 NC_013194.1 2137866 2138534 D KEGG: maq:Maqu_1010 hypothetical protein; hypothetical protein 2137866..2138534 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404034 YP_003167119.1 CDS CAP2UW1_1893 NC_013194.1 2138681 2140684 R PFAM: coenzyme A transferase; KEGG: dar:Daro_0457 propionate CoA-transferase; coenzyme A transferase complement(2138681..2140684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404035 YP_003167120.1 CDS CAP2UW1_1894 NC_013194.1 2140722 2142119 R PFAM: Citrate transporter; KEGG: dar:Daro_0456 hypothetical protein; Citrate transporter complement(2140722..2142119) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404036 YP_003167121.1 CDS CAP2UW1_1895 NC_013194.1 2142447 2144318 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: maq:Maqu_0357 NAD pyrophosphatase/5'-nucleotidase NadN; 5'-nucleotidase complement(2142447..2144318) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404037 YP_003167122.1 CDS CAP2UW1_1896 NC_013194.1 2144596 2145111 D PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: mpt:Mpe_A0662 putative cell wall turnover protein; peptidoglycan-binding LysM 2144596..2145111 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404038 YP_003167123.1 CDS CAP2UW1_1897 NC_013194.1 2145246 2145497 D KEGG: dar:Daro_2791 transglycosylase-associated protein; transglycosylase-associated protein 2145246..2145497 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404039 YP_003167124.1 CDS CAP2UW1_1898 NC_013194.1 2145531 2146595 R KEGG: cvi:CV_0172 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase complement(2145531..2146595) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404040 YP_003167125.1 CDS CAP2UW1_1899 NC_013194.1 2146786 2147943 D catalyzes the transfer of an amino moiety; putative aminotransferase 2146786..2147943 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404041 YP_003167126.1 CDS CAP2UW1_1900 NC_013194.1 2147936 2148103 D hypothetical protein 2147936..2148103 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404042 YP_003167127.1 CDS CAP2UW1_1901 NC_013194.1 2148469 2148921 D PFAM: protein of unknown function DUF1178; KEGG: dar:Daro_2040 protein of unknown function DUF1178; hypothetical protein 2148469..2148921 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404045 YP_003167128.1 CDS CAP2UW1_1902 NC_013194.1 2149037 2150149 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: azo:azo3623 alcohol dehydrogenase classIII; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2149037..2150149 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404046 YP_003167129.1 CDS CAP2UW1_1903 NC_013194.1 2150156 2151013 D KEGG: azo:azo3624 probable esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 2150156..2151013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404047 YP_003167130.1 CDS CAP2UW1_1904 NC_013194.1 2151102 2153021 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Metal-dependent hydrolase HDOD; KEGG: azo:azo1444 probable response regulator; response regulator receiver modulated diguanylate cyclase complement(2151102..2153021) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404048 YP_003167131.1 CDS CAP2UW1_1905 NC_013194.1 2153125 2153811 R PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein; hypothetical protein complement(2153125..2153811) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404049 YP_003167132.1 CDS CAP2UW1_1906 NC_013194.1 2153980 2155263 D PFAM: glycoside hydrolase family 24; KEGG: bqu:BQ11590 phage related lysozyme; glycoside hydrolase family 24 2153980..2155263 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404050 YP_003167133.1 CDS CAP2UW1_1907 NC_013194.1 2155362 2156747 D PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_2822 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2155362..2156747 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404051 YP_003167134.1 CDS CAP2UW1_1908 NC_013194.1 2156744 2158156 D TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: dar:Daro_2823 isochorismate synthase; isochorismate synthase 2156744..2158156 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404052 YP_003167135.1 CDS CAP2UW1_1909 NC_013194.1 2158153 2159910 D KEGG: dar:Daro_2345 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 2158153..2159910 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404053 YP_003167136.1 CDS CAP2UW1_1910 NC_013194.1 2160262 2161914 D PFAM: transposase IS4 family protein; KEGG: mar:MAE_34290 transposase; transposase IS4 family protein 2160262..2161914 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404054 YP_003167137.1 CDS CAP2UW1_1911 NC_013194.1 2162330 2162863 D KEGG: chy:CHY_1250 ISChy3, orf1; hypothetical protein 2162330..2162863 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404055 YP_003167138.1 CDS CAP2UW1_1912 NC_013194.1 2162993 2164318 D PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase; integrase catalytic subunit 2162993..2164318 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404056 YP_003167139.1 CDS CAP2UW1_1913 NC_013194.1 2164321 2165115 D KEGG: gka:GK1917 hypothetical protein; hypothetical protein 2164321..2165115 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404057 YP_003167140.1 CDS CAP2UW1_1914 NC_013194.1 2165112 2165315 D hypothetical protein 2165112..2165315 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404058 YP_003167141.1 CDS CAP2UW1_1915 NC_013194.1 2165293 2166006 R hypothetical protein complement(2165293..2166006) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404059 YP_003167142.1 CDS CAP2UW1_1916 NC_013194.1 2166290 2167312 R PFAM: Hemolysin-type calcium-binding region; KEGG: xfn:XfasM23_1592 haemolysin-type calcium binding domain protein; Hemolysin-type calcium-binding protein complement(2166290..2167312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404060 YP_003167143.1 CDS CAP2UW1_1917 NC_013194.1 2167345 2168136 R KEGG: xfm:Xfasm12_1648 hemolysin-type calcium binding protein; hypothetical protein complement(2167345..2168136) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404061 YP_003167144.1 CDS CAP2UW1_1918 NC_013194.1 2168215 2168697 R hypothetical protein complement(2168215..2168697) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404062 YP_003167145.1 CDS CAP2UW1_1919 NC_013194.1 2168694 2169377 R hypothetical protein complement(2168694..2169377) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404063 YP_003167146.1 CDS prpE NC_013194.1 2170021 2171922 R catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent; propionyl-CoA synthetase complement(2170021..2171922) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404065 YP_003167147.1 CDS CAP2UW1_1922 NC_013194.1 2171967 2173109 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dar:Daro_1203 response regulator receiver modulated diguanylate cyclase; response regulator receiver modulated diguanylate cyclase complement(2171967..2173109) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404066 YP_003167148.1 CDS CAP2UW1_1923 NC_013194.1 2173142 2174137 R TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: dar:Daro_1202 zinc-containing alcohol dehydrogenase superfamily; quinone oxidoreductase, YhdH/YhfP family complement(2173142..2174137) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404067 YP_003167149.1 CDS CAP2UW1_1924 NC_013194.1 2174504 2175013 D PFAM: NLP/P60 protein; KEGG: dar:Daro_1201 NLP/P60; NLP/P60 protein 2174504..2175013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404068 YP_003167150.1 CDS CAP2UW1_1925 NC_013194.1 2175173 2176192 D PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_1200 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 2175173..2176192 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404069 YP_003167151.1 CDS CAP2UW1_1926 NC_013194.1 2176232 2177866 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2176232..2177866) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404070 YP_003167152.1 CDS CAP2UW1_1927 NC_013194.1 2177990 2179099 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1197 ABC transporter related; ABC transporter 2177990..2179099 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404071 YP_003167153.1 CDS CAP2UW1_1928 NC_013194.1 2179096 2179803 D KEGG: nmu:Nmul_A2709 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2179096..2179803 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404072 YP_003167154.1 CDS CAP2UW1_1929 NC_013194.1 2179807 2180586 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2179807..2180586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404073 YP_003167155.1 CDS CAP2UW1_1930 NC_013194.1 2180709 2182604 R PFAM: histidine kinase HAMP region domain protein; KEGG: mag:amb4076 methyl-accepting chemotaxis protein; histidine kinase HAMP region domain-containing protein complement(2180709..2182604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404074 YP_003167156.1 CDS CAP2UW1_1931 NC_013194.1 2182704 2183771 R KEGG: reh:H16_A3291 predicted aminopeptidase; aminopeptidase complement(2182704..2183771) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404075 YP_003167157.1 CDS CAP2UW1_1932 NC_013194.1 2183812 2184489 R KEGG: eba:ebA5275 probableacetyltransferase/hydrolase; putativeacetyltransferase/hydrolase complement(2183812..2184489) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404076 YP_003167158.1 CDS guaA NC_013194.1 2184840 2186405 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2184840..2186405) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404077 YP_003167159.1 CDS CAP2UW1_1934 NC_013194.1 2186471 2187928 R KEGG: dar:Daro_2338 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(2186471..2187928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404078 YP_003167160.1 CDS CAP2UW1_1935 NC_013194.1 2187985 2188434 D KEGG: dar:Daro_2339 hypothetical protein; hypothetical protein 2187985..2188434 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404079 YP_003167161.1 CDS CAP2UW1_1936 NC_013194.1 2188436 2188756 R PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein; hypothetical protein complement(2188436..2188756) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404080 YP_003167162.1 CDS CAP2UW1_1937 NC_013194.1 2188749 2189204 R PFAM: cyclase/dehydrase; KEGG: dar:Daro_2341 streptomyces cyclase/dehydrase; cyclase/dehydrase complement(2188749..2189204) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404081 YP_003167163.1 CDS CAP2UW1_1938 NC_013194.1 2189283 2189729 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: nmu:Nmul_A1203 SsrA-binding protein; SsrA-binding protein 2189283..2189729 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404082 YP_003167164.1 CDS CAP2UW1_1939 NC_013194.1 2189780 2190532 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: dar:Daro_1767 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(2189780..2190532) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404083 YP_003167165.1 CDS CAP2UW1_1940 NC_013194.1 2190683 2191981 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region; integrase catalytic subunit 2190683..2191981 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404084 YP_003167166.1 CDS CAP2UW1_1941 NC_013194.1 2192409 2193191 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: psa:PST_3337 Fe-S oxidoreductase; hypothetical protein 2192409..2193191 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404085 YP_003167167.1 CDS CAP2UW1_1942 NC_013194.1 2193188 2193865 D PFAM: protein of unknown function DUF162; KEGG: azo:azo1168 hypothetical protein; hypothetical protein 2193188..2193865 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404086 YP_003167168.1 CDS CAP2UW1_1943 NC_013194.1 2193862 2195301 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: azo:azo1167 conserved hypothetical iron-sulfur protein; iron-sulfur cluster-binding protein 2193862..2195301 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404087 YP_003167169.1 CDS CAP2UW1_1944 NC_013194.1 2195335 2195814 D PFAM: Cupin 2 conserved barrel domain protein; KEGG: rfr:Rfer_3146 cupin 2 protein; Cupin 2 barrel domain-containing protein 2195335..2195814 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404088 YP_003167170.1 CDS CAP2UW1_1945 NC_013194.1 2195877 2196782 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reu:Reut_A0083 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(2195877..2196782) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404089 YP_003167171.1 CDS CAP2UW1_1946 NC_013194.1 2197083 2197451 D hypothetical protein 2197083..2197451 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404090 YP_003167172.1 CDS CAP2UW1_1947 NC_013194.1 2197618 2198514 D hypothetical protein 2197618..2198514 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404091 YP_003167173.1 CDS CAP2UW1_1948 NC_013194.1 2198976 2199767 D KEGG: dar:Daro_3188 hypothetical protein; hypothetical protein 2198976..2199767 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404092 YP_003167174.1 CDS CAP2UW1_1949 NC_013194.1 2199996 2200253 R KEGG: dar:Daro_1013 hypothetical protein; hypothetical protein complement(2199996..2200253) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404093 YP_003167175.1 CDS CAP2UW1_1950 NC_013194.1 2200387 2201271 R KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46; alpha/beta hydrolase BEM46 complement(2200387..2201271) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404094 YP_003167176.1 CDS clpX NC_013194.1 2201255 2202334 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2201255..2202334) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404095 YP_003167177.1 CDS CAP2UW1_1952 NC_013194.1 2202428 2203648 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb0291 permease of the major facilitator superfamily; Bcr/CflA subfamily drug resistance transporter complement(2202428..2203648) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404096 YP_003167178.1 CDS CAP2UW1_1953 NC_013194.1 2203688 2203960 R hypothetical protein complement(2203688..2203960) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404097 YP_003167179.1 CDS CAP2UW1_1954 NC_013194.1 2204016 2204117 R hypothetical protein complement(2204016..2204117) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404098 YP_003167180.1 CDS CAP2UW1_1955 NC_013194.1 2204114 2204905 R PFAM: protein of unknown function DUF455; KEGG: bbr:BB3580 hypothetical protein; hypothetical protein complement(2204114..2204905) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404099 YP_003167181.1 CDS CAP2UW1_1956 NC_013194.1 2204902 2205489 R KEGG: azo:azo0065 hypothetical protein; hypothetical protein complement(2204902..2205489) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404100 YP_003167182.1 CDS CAP2UW1_1957 NC_013194.1 2205559 2206041 R PFAM: glutathione peroxidase; KEGG: azo:azo1277 conserved hypothetical glutathione peroxidase; glutathione peroxidase complement(2205559..2206041) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404101 YP_003167183.1 CDS CAP2UW1_1958 NC_013194.1 2206072 2208963 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(2206072..2208963) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404102 YP_003167184.1 CDS CAP2UW1_1959 NC_013194.1 2208992 2209375 R TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: dar:Daro_2464 glycine cleavage system H protein; glycine cleavage system H protein complement(2208992..2209375) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404103 YP_003167185.1 CDS CAP2UW1_1960 NC_013194.1 2209457 2210545 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dar:Daro_2463 aminomethyltransferase; glycine cleavage system T protein complement(2209457..2210545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404104 YP_003167186.1 CDS CAP2UW1_1961 NC_013194.1 2211132 2211944 D PFAM: protein of unknown function DUF1555; KEGG: azo:azo3175 hypothetical secreted protein; hypothetical protein 2211132..2211944 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404105 YP_003167187.1 CDS CAP2UW1_1962 NC_013194.1 2212673 2214220 D PFAM: glycosyl transferase family 4; KEGG: neu:NE2281 glycosyl transferase, family 4; glycosyl transferase family 4 2212673..2214220 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404106 YP_003167188.1 CDS CAP2UW1_1963 NC_013194.1 2214233 2214676 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: ade:Adeh_4276 tyrosine phosphatase; protein tyrosine phosphatase 2214233..2214676 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404107 YP_003167189.1 CDS CAP2UW1_1964 NC_013194.1 2215188 2216387 D PFAM: polysaccharide export protein; KEGG: net:Neut_2119 polysaccharide export protein; polysaccharide export protein 2215188..2216387 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404108 YP_003167190.1 CDS CAP2UW1_1965 NC_013194.1 2216523 2218787 D KEGG: ade:Adeh_4274 tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family 2216523..2218787 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404109 YP_003167191.1 CDS CAP2UW1_1966 NC_013194.1 2218919 2219671 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: dar:Daro_2969 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase complement(2218919..2219671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404110 YP_003167192.1 CDS CAP2UW1_1967 NC_013194.1 2219789 2220868 R KEGG: pmt:PMT1202 carboxysome shell protein CsoS3; hypothetical protein complement(2219789..2220868) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404111 YP_003167193.1 CDS CAP2UW1_1968 NC_013194.1 2220877 2222166 R KEGG: eba:ebA2628 ATP sulfurylase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase large subunit complement(2220877..2222166) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404112 YP_003167194.1 CDS CAP2UW1_1969 NC_013194.1 2222166 2223086 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(2222166..2223086) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404113 YP_003167195.1 CDS CAP2UW1_1970 NC_013194.1 2223115 2223840 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(2223115..2223840) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404114 YP_003167196.1 CDS CAP2UW1_1971 NC_013194.1 2223837 2224358 R PFAM: conserved hypothetical protein; KEGG: hch:HCH_02537 hypothetical protein; hypothetical protein complement(2223837..2224358) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404115 YP_003167197.1 CDS CAP2UW1_1972 NC_013194.1 2224351 2226060 R PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: azo:azo0432 putative sulfite reductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain-containing protein complement(2224351..2226060) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404116 YP_003167198.1 CDS CAP2UW1_1973 NC_013194.1 2226116 2226892 R PFAM: protein of unknown function DUF81; KEGG: dar:Daro_2911 protein of unknown function DUF81; hypothetical protein complement(2226116..2226892) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404117 YP_003167199.1 CDS CAP2UW1_1974 NC_013194.1 2226999 2227946 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_2910 transcriptional regulator CysB-like protein; transcriptional regulator CysB-like protein 2226999..2227946 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404118 YP_003167200.1 CDS CAP2UW1_1975 NC_013194.1 2227943 2228335 D KEGG: nmu:Nmul_A0923 secretion protein HlyD; hypothetical protein 2227943..2228335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404119 YP_003167201.1 CDS CAP2UW1_1976 NC_013194.1 2228432 2229121 D hypothetical protein 2228432..2229121 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404120 YP_003167202.1 CDS CAP2UW1_1977 NC_013194.1 2229136 2229657 R KEGG: dar:Daro_2740 transferase hexapeptide repeat; transferase hexapeptide repeat-containing protein complement(2229136..2229657) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404121 YP_003167203.1 CDS CAP2UW1_1978 NC_013194.1 2229708 2230928 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1168 protein of unknown function DUF214; hypothetical protein complement(2229708..2230928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404122 YP_003167204.1 CDS CAP2UW1_1979 NC_013194.1 2230922 2231632 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1167 ABC transporter related; ABC transporter complement(2230922..2231632) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404123 YP_003167205.1 CDS CAP2UW1_1980 NC_013194.1 2231632 2232852 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_1166 secretion protein HlyD; RND family efflux transporter MFP subunit complement(2231632..2232852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404124 YP_003167206.1 CDS CAP2UW1_1981 NC_013194.1 2232849 2234300 R PFAM: outer membrane efflux protein; KEGG: dar:Daro_1165 outer membrane efflux protein; outer membrane efflux protein complement(2232849..2234300) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404125 YP_003167207.1 CDS CAP2UW1_1982 NC_013194.1 2234442 2234828 D KEGG: dar:Daro_2734 hypothetical protein; hypothetical protein 2234442..2234828 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404126 YP_003167208.1 CDS CAP2UW1_1983 NC_013194.1 2234825 2235484 D PFAM: protein of unknown function DUF479; KEGG: azo:azo2378 hypothetical protein; hypothetical protein 2234825..2235484 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404127 YP_003167209.1 CDS CAP2UW1_1984 NC_013194.1 2235481 2237082 R PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase; Vinylacetyl-CoA Delta-isomerase complement(2235481..2237082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404128 YP_003167210.1 CDS CAP2UW1_1985 NC_013194.1 2237214 2239055 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: nmu:Nmul_A1770 GTP-binding protein TypA; GTP-binding protein TypA complement(2237214..2239055) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404129 YP_003167211.1 CDS CAP2UW1_1986 NC_013194.1 2239141 2239527 R PFAM: globin; KEGG: dar:Daro_1997 protozoan/cyanobacterial globin; globin complement(2239141..2239527) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404130 YP_003167212.1 CDS CAP2UW1_1987 NC_013194.1 2239840 2240115 D KEGG: tbd:Tbd_2617 hypothetical protein; hypothetical protein 2239840..2240115 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404131 YP_003167213.1 CDS CAP2UW1_1988 NC_013194.1 2240216 2241655 R PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: glo:Glov_1809 putative signal-transduction protein with CBS domains; putative signal transduction protein with CBS domains complement(2240216..2241655) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404132 YP_003167214.1 CDS CAP2UW1_1989 NC_013194.1 2241829 2242182 R TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: abo:ABO_2653 putative monovalent cation/H+ antiporter subunit G; monovalent cation/proton antiporter, MnhG/PhaG subunit complement(2241829..2242182) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404133 YP_003167215.1 CDS CAP2UW1_1990 NC_013194.1 2242179 2242448 R PFAM: multiple resistance and pH regulation protein F; KEGG: mfa:Mfla_0578 putative monovalent cation/H+ antiporter subunit F; multiple resistance and pH regulation protein F complement(2242179..2242448) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404134 YP_003167216.1 CDS CAP2UW1_1991 NC_013194.1 2242442 2242933 R PFAM: cation antiporter; KEGG: abo:ABO_2655 putative monovalent cation/H+ antiporter subunit E; cation antiporter complement(2242442..2242933) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404135 YP_003167217.1 CDS CAP2UW1_1992 NC_013194.1 2242930 2244450 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tbd:Tbd_0495 putative monovalent cation/H+ antiporter subunit D; NADH/Ubiquinone/plastoquinone (complex I) complement(2242930..2244450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404136 YP_003167218.1 CDS CAP2UW1_1993 NC_013194.1 2244450 2244776 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tbd:Tbd_0496 putative monovalent cation/H+ antiporter subunit C; NADH-ubiquinone oxidoreductase chain 4L complement(2244450..2244776) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404137 YP_003167219.1 CDS CAP2UW1_1994 NC_013194.1 2244776 2247592 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(2244776..2247592) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404138 YP_003167220.1 CDS CAP2UW1_1995 NC_013194.1 2247769 2248467 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: dar:Daro_3566 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 2247769..2248467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404139 YP_003167221.1 CDS CAP2UW1_1996 NC_013194.1 2248464 2249189 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0578 two component transcriptional regulator, winged helix family; winged helix family two component heavy metal response transcriptional regulator PhoB 2248464..2249189 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404140 YP_003167222.1 CDS CAP2UW1_1997 NC_013194.1 2249186 2250496 D TIGRFAM: phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: tbd:Tbd_0217 PAS/PAC sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2249186..2250496 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404141 YP_003167223.1 CDS CAP2UW1_1998 NC_013194.1 2250862 2251560 D KEGG: bid:Bind_1962 hypothetical protein; hypothetical protein 2250862..2251560 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404142 YP_003167224.1 CDS CAP2UW1_1999 NC_013194.1 2251835 2252311 D PFAM: proteinase inhibitor I11 ecotin; KEGG: har:HEAR0764 ecotin precursor; proteinase inhibitor I11 ecotin 2251835..2252311 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404143 YP_003167225.1 CDS CAP2UW1_2000 NC_013194.1 2252432 2252899 R PFAM: protein of unknown function DUF937; KEGG: mpt:Mpe_A0199 hypothetical protein; hypothetical protein complement(2252432..2252899) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404144 YP_003167226.1 CDS CAP2UW1_2001 NC_013194.1 2253141 2253872 D KEGG: reu:Reut_B5186 hypothetical protein; hypothetical protein 2253141..2253872 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404145 YP_003167227.1 CDS CAP2UW1_2002 NC_013194.1 2253873 2254670 R KEGG: gsu:GSU1096 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase complement(2253873..2254670) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404146 YP_003167228.1 CDS CAP2UW1_2003 NC_013194.1 2254714 2255670 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A1087 phosphate transport system permease protein 2; phosphate ABC transporter permease complement(2254714..2255670) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404147 YP_003167229.1 CDS CAP2UW1_2004 NC_013194.1 2255673 2256647 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A1086 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease complement(2255673..2256647) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404148 YP_003167230.1 CDS CAP2UW1_2005 NC_013194.1 2256735 2257739 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0897 phosphate binding protein; phosphate-binding protein complement(2256735..2257739) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404149 YP_003167231.1 CDS CAP2UW1_2006 NC_013194.1 2257856 2258197 R KEGG: tbd:Tbd_0366 hypothetical protein; hypothetical protein complement(2257856..2258197) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404150 YP_003167232.1 CDS CAP2UW1_2007 NC_013194.1 2258292 2259320 R TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: nmu:Nmul_A0897 phosphate binding protein; phosphate-binding protein complement(2258292..2259320) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404151 YP_003167233.1 CDS CAP2UW1_2008 NC_013194.1 2259534 2260481 R PFAM: periplasmic solute binding protein; KEGG: rru:Rru_A3704 periplasmic solute binding protein; periplasmic solute-binding protein complement(2259534..2260481) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404152 YP_003167234.1 CDS CAP2UW1_2009 NC_013194.1 2260501 2261382 R PFAM: ABC-3 protein; KEGG: rru:Rru_A3703 ABC-3 transporter component; ABC transporter complement(2260501..2261382) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404153 YP_003167235.1 CDS CAP2UW1_2010 NC_013194.1 2261379 2262176 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azc:AZC_0562 ABC transporter ATP-binding protein; ABC transporter complement(2261379..2262176) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404154 YP_003167236.1 CDS CAP2UW1_2011 NC_013194.1 2262173 2262316 R hypothetical protein complement(2262173..2262316) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404155 YP_003167237.1 CDS CAP2UW1_2012 NC_013194.1 2262600 2264519 D PFAM: protein of unknown function DUF839; KEGG: mpt:Mpe_A3526 hypothetical protein; hypothetical protein 2262600..2264519 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404156 YP_003167238.1 CDS CAP2UW1_2013 NC_013194.1 2264570 2264782 R KEGG: rfr:Rfer_1604 hypothetical protein; hypothetical protein complement(2264570..2264782) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404157 YP_003167239.1 CDS CAP2UW1_2014 NC_013194.1 2264779 2265432 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_3150 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit complement(2264779..2265432) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404158 YP_003167240.1 CDS CAP2UW1_2015 NC_013194.1 2265750 2266868 D TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; alanine dehydrogenase/PNT domain protein; KEGG: reu:Reut_B5878 L-alanine dehydrogenase; alanine dehydrogenase 2265750..2266868 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404159 YP_003167241.1 CDS CAP2UW1_2016 NC_013194.1 2266911 2267720 R PFAM: inositol monophosphatase; KEGG: eba:ebA6410 inositol monophosphatase (extragenic suppressor protein); Inositol-phosphate phosphatase complement(2266911..2267720) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404160 YP_003167242.1 CDS CAP2UW1_2017 NC_013194.1 2267786 2268583 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dar:Daro_1682 RNA methyltransferase TrmH, group 1; TrmH family RNA methyltransferase 2267786..2268583 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404161 YP_003167243.1 CDS CAP2UW1_2018 NC_013194.1 2268643 2269395 D TIGRFAM: serine O-acetyltransferase; KEGG: dar:Daro_1947 serine O-acetyltransferase; serine O-acetyltransferase 2268643..2269395 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404162 YP_003167244.1 CDS CAP2UW1_2019 NC_013194.1 2269453 2269947 D TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: dar:Daro_1948 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 2269453..2269947 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404163 YP_003167245.1 CDS CAP2UW1_2020 NC_013194.1 2269964 2271121 D PFAM: aminotransferase class V; KEGG: dar:Daro_1949 aminotransferase, class V; class V aminotransferase 2269964..2271121 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404164 YP_003167246.1 CDS CAP2UW1_2021 NC_013194.1 2271191 2272402 D TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: azo:azo2016 cysteine desulfurase; cysteine desulfurase IscS 2271191..2272402 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404165 YP_003167247.1 CDS CAP2UW1_2022 NC_013194.1 2272426 2272815 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: azo:azo2015 scaffold protein; FeS cluster assembly scaffold IscU 2272426..2272815 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404166 YP_003167248.1 CDS CAP2UW1_2023 NC_013194.1 2272865 2273188 D TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_1952 HesB/YadR/YfhF:iron-sulphur cluster assembly protein IscA; iron-sulfur cluster assembly protein IscA 2272865..2273188 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404167 YP_003167249.1 CDS hscB NC_013194.1 2273276 2273803 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 2273276..2273803 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404168 YP_003167250.1 CDS hscA NC_013194.1 2273852 2275753 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 2273852..2275753 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404169 YP_003167251.1 CDS CAP2UW1_2026 NC_013194.1 2275750 2276091 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: dar:Daro_1955 ferredoxin, 2Fe-2S type; ferredoxin, 2Fe-2S type, ISC system 2275750..2276091 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404170 YP_003167252.1 CDS CAP2UW1_2027 NC_013194.1 2276088 2276282 D TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: dar:Daro_1956 protein of unknown function DUF528; FeS assembly protein IscX 2276088..2276282 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404171 YP_003167253.1 CDS CAP2UW1_2028 NC_013194.1 2276279 2276668 D KEGG: dar:Daro_1957 hypothetical protein; hypothetical protein 2276279..2276668 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404172 YP_003167254.1 CDS CAP2UW1_2029 NC_013194.1 2276780 2277415 R PFAM: NUDIX hydrolase; KEGG: pmy:Pmen_0608 NUDIX hydrolase; ADP-ribose diphosphatase complement(2276780..2277415) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404173 YP_003167255.1 CDS CAP2UW1_2030 NC_013194.1 2277631 2278494 D PFAM: ribonuclease BN; KEGG: dar:Daro_0234 ribonuclease BN; ribonuclease BN 2277631..2278494 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404174 YP_003167256.1 CDS CAP2UW1_2031 NC_013194.1 2278694 2280130 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: gvi:gll2670 probable amino acid decarboxylase; Pyridoxal-dependent decarboxylase 2278694..2280130 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404175 YP_003167257.1 CDS CAP2UW1_2032 NC_013194.1 2280336 2281817 D PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_3315 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; FAD linked oxidase domain-containing protein 2280336..2281817 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404176 YP_003167258.1 CDS CAP2UW1_2033 NC_013194.1 2281817 2282884 D PFAM: FAD linked oxidase domain protein; KEGG: har:HEAR0285 glycolate oxidase subunit GlcE; FAD linked oxidase domain-containing protein 2281817..2282884 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404177 YP_003167259.1 CDS CAP2UW1_2034 NC_013194.1 2282898 2284145 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: eba:ebA4492 glycolate oxidase iron-sulfur subunit; hypothetical protein 2282898..2284145 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404178 YP_003167260.1 CDS CAP2UW1_2035 NC_013194.1 2284180 2285532 D PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A1197 acyl-CoA synthetase; AMP-dependent synthetase and ligase 2284180..2285532 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404179 YP_003167261.1 CDS CAP2UW1_2036 NC_013194.1 2285650 2285952 D KEGG: azo:azo2834 hypothetical protein; hypothetical protein 2285650..2285952 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404180 YP_003167262.1 CDS CAP2UW1_2037 NC_013194.1 2286048 2286863 D SMART: protein phosphatase 2C domain protein; KEGG: dar:Daro_3311 protein phosphatase 2C-like; protein serine/threonine phosphatase 2286048..2286863 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404181 YP_003167263.1 CDS CAP2UW1_2038 NC_013194.1 2286837 2288312 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dar:Daro_3310 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD/DEAH box helicase domain-containing protein complement(2286837..2288312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404182 YP_003167264.1 CDS CAP2UW1_2039 NC_013194.1 2288418 2290511 R PFAM: protein of unknown function DUF1631; KEGG: dar:Daro_4133 protein of unknown function DUF1631; hypothetical protein complement(2288418..2290511) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404183 YP_003167265.1 CDS CAP2UW1_2040 NC_013194.1 2290638 2291042 R KEGG: dar:Daro_3307 hypothetical protein; hypothetical protein complement(2290638..2291042) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404184 YP_003167266.1 CDS CAP2UW1_2041 NC_013194.1 2291577 2294354 D KEGG: dar:Daro_2439 TPR repeat:tetratricopeptide TPR_3:tetratricopeptide TPR_4; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; PEP-CTERM system TPR-repeat lipoprotein 2291577..2294354 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404185 YP_003167267.1 CDS CAP2UW1_2042 NC_013194.1 2294583 2295407 D KEGG: dar:Daro_2746 hypothetical protein; hypothetical protein 2294583..2295407 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404186 YP_003167268.1 CDS CAP2UW1_2043 NC_013194.1 2295501 2296859 R PFAM: transposase IS4 family protein; KEGG: eba:p2A146 probable transposase; transposase IS4 family protein complement(2295501..2296859) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404187 YP_003167269.1 CDS CAP2UW1_2044 NC_013194.1 2297194 2298546 D KEGG: mxa:MXAN_1429 response regulator receiver domain/DnaJ domain protein; hypothetical protein 2297194..2298546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404188 YP_003167270.1 CDS CAP2UW1_2045 NC_013194.1 2298737 2299996 D PFAM: extracellular solute-binding protein family 1; KEGG: dar:Daro_3306 extracellular solute-binding protein, family 1; family 1 extracellular solute-binding protein 2298737..2299996 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404189 YP_003167271.1 CDS ugpQ NC_013194.1 2299993 2300760 D hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate; cytoplasmic glycerophosphodiester phosphodiesterase 2299993..2300760 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404190 YP_003167272.1 CDS alaS NC_013194.1 2300961 2303597 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2300961..2303597 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404191 YP_003167273.1 CDS CAP2UW1_2048 NC_013194.1 2303727 2304758 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bph:Bphy_1610 threonine aldolase; Threonine aldolase 2303727..2304758 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404192 YP_003167274.1 CDS CAP2UW1_2049 NC_013194.1 2304755 2305246 D PFAM: NUDIX hydrolase; KEGG: rme:Rmet_0810 NUDIX hydrolase; NUDIX hydrolase 2304755..2305246 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404193 YP_003167275.1 CDS CAP2UW1_2050 NC_013194.1 2305665 2306546 R KEGG: dar:Daro_1694 cobalt transport protein ATP-binding subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase subunit complement(2305665..2306546) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404194 YP_003167276.1 CDS CAP2UW1_2051 NC_013194.1 2306543 2307289 R PFAM: cobalt transport protein; KEGG: dar:Daro_1695 cobalt transport protein; cobalt transport protein complement(2306543..2307289) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404195 YP_003167277.1 CDS CAP2UW1_2052 NC_013194.1 2307283 2307639 R periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN complement(2307283..2307639) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404196 YP_003167278.1 CDS CAP2UW1_2053 NC_013194.1 2307636 2308313 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(2307636..2308313) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404197 YP_003167279.1 CDS CAP2UW1_2054 NC_013194.1 2308869 2309675 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: rfr:Rfer_2969 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 2308869..2309675 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404198 YP_003167280.1 CDS CAP2UW1_2055 NC_013194.1 2309682 2310335 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2970 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter permease 2309682..2310335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404199 YP_003167281.1 CDS CAP2UW1_2056 NC_013194.1 2310316 2311092 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2971 ABC transporter related; ABC transporter 2310316..2311092 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404200 YP_003167282.1 CDS CAP2UW1_2057 NC_013194.1 2311205 2312167 R PFAM: PGAP1 family protein; KEGG: dar:Daro_2143 conserved hypothetical hydrolase/lipase; PGAP1 family protein complement(2311205..2312167) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404201 YP_003167283.1 CDS CAP2UW1_2058 NC_013194.1 2312299 2312787 R PFAM: protein of unknown function DUF1499; KEGG: lch:Lcho_1955 protein of unknown function DUF1499; hypothetical protein complement(2312299..2312787) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404202 YP_003167284.1 CDS CAP2UW1_2059 NC_013194.1 2313087 2314052 D KEGG: dar:Daro_1104 hypothetical protein; hypothetical protein 2313087..2314052 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404203 YP_003167285.1 CDS CAP2UW1_2060 NC_013194.1 2314162 2315139 D TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: hau:Haur_4713 1-phosphofructokinase; 1-phosphofructokinase 2314162..2315139 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404204 YP_003167286.1 CDS CAP2UW1_2061 NC_013194.1 2315225 2317189 R KEGG: rxy:Rxyl_0316 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching protein complement(2315225..2317189) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404205 YP_003167287.1 CDS CAP2UW1_2062 NC_013194.1 2317490 2318557 R PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: sfr:Sfri_1257 oxidoreductase domain protein; oxidoreductase domain-containing protein complement(2317490..2318557) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404206 YP_003167288.1 CDS CAP2UW1_2063 NC_013194.1 2318900 2319556 D KEGG: bja:bll3605 hypothetical protein; hypothetical protein 2318900..2319556 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404207 YP_003167289.1 CDS CAP2UW1_2064 NC_013194.1 2319596 2319979 D KEGG: shw:Sputw3181_0402 hypothetical protein; hypothetical protein 2319596..2319979 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404208 YP_003167290.1 CDS CAP2UW1_2065 NC_013194.1 2319966 2320655 R hypothetical protein complement(2319966..2320655) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404209 YP_003167291.1 CDS CAP2UW1_2066 NC_013194.1 2321425 2323413 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; type IV pilus assembly PilZ; KEGG: aeh:Mlg_1937 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2321425..2323413 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404210 YP_003167292.1 CDS CAP2UW1_2067 NC_013194.1 2323624 2324211 R hypothetical protein complement(2323624..2324211) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404211 YP_003167293.1 CDS CAP2UW1_2068 NC_013194.1 2324697 2325500 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein complement(2324697..2325500) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404212 YP_003167294.1 CDS CAP2UW1_2069 NC_013194.1 2325556 2327082 R PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit complement(2325556..2327082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404213 YP_003167295.1 CDS CAP2UW1_2070 NC_013194.1 2327473 2328540 D PFAM: sodium:dicarboxylate symporter; KEGG: rso:RSp0995 probable C4-dicarboxylate transport transmembrane protein; sodium:dicarboxylate symporter 2327473..2328540 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404214 YP_003167296.1 CDS CAP2UW1_2071 NC_013194.1 2328555 2329832 D PFAM: MOFRL domain protein; KEGG: lch:Lcho_3177 hydroxypyruvate reductase; Hydroxypyruvate reductase 2328555..2329832 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404215 YP_003167297.1 CDS CAP2UW1_2072 NC_013194.1 2330120 2330542 D KEGG: mpt:Mpe_B0470 hypothetical protein; hypothetical protein 2330120..2330542 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404216 YP_003167298.1 CDS CAP2UW1_2073 NC_013194.1 2330619 2331587 D KEGG: bja:bll5053 putative cytochrome c binding protein; putative cytochrome c-binding protein 2330619..2331587 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404217 YP_003167299.1 CDS CAP2UW1_2074 NC_013194.1 2331801 2332766 D PFAM: conserved hypothetical protein; KEGG: lch:Lcho_4297 hypothetical protein; hypothetical protein 2331801..2332766 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404218 YP_003167300.1 CDS CAP2UW1_2075 NC_013194.1 2333476 2336391 D PFAM: TPR repeat-containing protein; SEC-C motif domain protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cts:Ctha_1311 TPR repeat-containing protein; SEC-C motif domain-containing protein 2333476..2336391 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404219 YP_003167301.1 CDS CAP2UW1_2076 NC_013194.1 2337168 2337638 R PFAM: PEBP family protein; KEGG: mca:MCA0141 hypothetical protein; PEBP family protein complement(2337168..2337638) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404220 YP_003167302.1 CDS CAP2UW1_2077 NC_013194.1 2337776 2338468 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: azo:azo0951 conserved hypothetical phosphomannose protein; Cupin 2 barrel domain-containing protein complement(2337776..2338468) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404221 YP_003167303.1 CDS CAP2UW1_2078 NC_013194.1 2338755 2339543 D PFAM: protein of unknown function DUF82; KEGG: pol:Bpro_1634 protein of unknown function DUF82; hypothetical protein 2338755..2339543 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404222 YP_003167304.1 CDS CAP2UW1_2079 NC_013194.1 2339610 2339798 R KEGG: bvi:Bcep1808_3221 putative transmembrane protein; hypothetical protein complement(2339610..2339798) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404223 YP_003167305.1 CDS CAP2UW1_2080 NC_013194.1 2340735 2342195 R KEGG: mac:MA1243 hypothetical protein; hypothetical protein complement(2340735..2342195) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404224 YP_003167306.1 CDS CAP2UW1_2081 NC_013194.1 2342418 2344208 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: reh:H16_A3527 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein complement(2342418..2344208) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404225 YP_003167307.1 CDS CAP2UW1_2082 NC_013194.1 2344201 2344746 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: pol:Bpro_1238 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(2344201..2344746) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404226 YP_003167308.1 CDS CAP2UW1_2083 NC_013194.1 2345065 2347653 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: gme:Gmet_1083 PAS/PAC sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 2345065..2347653 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404227 YP_003167309.1 CDS CAP2UW1_2084 NC_013194.1 2347654 2349078 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1250 sigma-54 dependent DNA-binding response regulator; two component sigma-54 specific Fis family transcriptional regulator 2347654..2349078 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404228 YP_003167310.1 CDS CAP2UW1_2085 NC_013194.1 2349860 2350900 D PFAM: phosphate transporter; KEGG: dar:Daro_0679 phosphate transporter; phosphate transporter 2349860..2350900 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404229 YP_003167311.1 CDS CAP2UW1_2086 NC_013194.1 2350903 2351559 D KEGG: dar:Daro_0678 phosphate transport regulator-like protein; phosphate transport regulator-like protein 2350903..2351559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404230 YP_003167312.1 CDS CAP2UW1_2087 NC_013194.1 2352152 2353615 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase; CHAD domain-containing protein 2352152..2353615 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404231 YP_003167313.1 CDS CAP2UW1_2088 NC_013194.1 2353764 2354288 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 2353764..2354288 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404232 YP_003167314.1 CDS CAP2UW1_2089 NC_013194.1 2354418 2355740 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 2354418..2355740 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404233 YP_003167315.1 CDS CAP2UW1_2090 NC_013194.1 2355743 2356537 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 2355743..2356537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404234 YP_003167316.1 CDS CAP2UW1_2091 NC_013194.1 2356534 2356731 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 2356534..2356731 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404235 YP_003167317.1 CDS CAP2UW1_2092 NC_013194.1 2357649 2358425 D KEGG: ade:Adeh_0129 methyltransferase type 11; hypothetical protein 2357649..2358425 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404236 YP_003167318.1 CDS CAP2UW1_2093 NC_013194.1 2358562 2359242 D KEGG: pab:PAB0513 hypothetical protein; hypothetical protein 2358562..2359242 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404237 YP_003167319.1 CDS CAP2UW1_2094 NC_013194.1 2359531 2361732 D PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter; sulfate transporter 2359531..2361732 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404238 YP_003167320.1 CDS CAP2UW1_2095 NC_013194.1 2361729 2361830 R hypothetical protein complement(2361729..2361830) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404239 YP_003167321.1 CDS CAP2UW1_2096 NC_013194.1 2361970 2362476 D PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA; UspA domain-containing protein 2361970..2362476 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404240 YP_003167322.1 CDS CAP2UW1_2097 NC_013194.1 2362586 2363203 D PFAM: HhH-GPD family protein; KEGG: dar:Daro_0843 HhH-GPD; HhH-GPD family protein 2362586..2363203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404241 YP_003167323.1 CDS CAP2UW1_2098 NC_013194.1 2363303 2364271 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2363303..2364271 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404242 YP_003167324.1 CDS CAP2UW1_2099 NC_013194.1 2364240 2365646 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: tbd:Tbd_0589 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 2364240..2365646 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404243 YP_003167325.1 CDS CAP2UW1_2100 NC_013194.1 2365909 2367813 D PFAM: K potassium transporter; KEGG: eba:ebA3621 potassium uptake protein; K potassium transporter 2365909..2367813 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404244 YP_003167326.1 CDS CAP2UW1_2101 NC_013194.1 2367940 2368719 D catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA; methylmalonyl-CoA decarboxylase 2367940..2368719 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404245 YP_003167327.1 CDS CAP2UW1_2102 NC_013194.1 2368784 2369383 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mag:amb0897 response regulator; two component LuxR family transcriptional regulator complement(2368784..2369383) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404246 YP_003167328.1 CDS CAP2UW1_2103 NC_013194.1 2369380 2371395 R KEGG: dar:Daro_2995 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(2369380..2371395) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404247 YP_003167329.1 CDS CAP2UW1_2104 NC_013194.1 2371606 2372619 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: dar:Daro_2993 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 2371606..2372619 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404248 YP_003167330.1 CDS CAP2UW1_2105 NC_013194.1 2372702 2373418 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: eba:ebA4159 C4-dicarboxylate transport system, permease small subunit; Tripartite ATP-independent periplasmic transporter DctQ component 2372702..2373418 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404249 YP_003167331.1 CDS CAP2UW1_2106 NC_013194.1 2373415 2374698 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_1481 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 2373415..2374698 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404250 YP_003167332.1 CDS CAP2UW1_2107 NC_013194.1 2374876 2375304 D PFAM: nucleoside diphosphate kinase; KEGG: dar:Daro_2989 nucleoside diphosphate kinase; Nucleoside-diphosphate kinase 2374876..2375304 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404251 YP_003167333.1 CDS CAP2UW1_2108 NC_013194.1 2375324 2376445 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: dar:Daro_2988 conserved hypothetical protein 48; radical SAM enzyme, Cfr family 2375324..2376445 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404252 YP_003167334.1 CDS CAP2UW1_2109 NC_013194.1 2376442 2377245 D KEGG: dar:Daro_2987 TPR repeat; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 2376442..2377245 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404253 YP_003167335.1 CDS CAP2UW1_2110 NC_013194.1 2377301 2378179 D KEGG: dar:Daro_2986 hypothetical protein; hypothetical protein 2377301..2378179 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404254 YP_003167336.1 CDS ispG NC_013194.1 2378184 2379449 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2378184..2379449 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404255 YP_003167337.1 CDS hisS NC_013194.1 2379446 2380741 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2379446..2380741 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404256 YP_003167338.1 CDS CAP2UW1_2113 NC_013194.1 2380744 2381427 D KEGG: dar:Daro_2983 putative transmembrane protein; hypothetical protein 2380744..2381427 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404257 YP_003167339.1 CDS CAP2UW1_2114 NC_013194.1 2381427 2382569 D TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: dar:Daro_2982 pyrrolo-quinoline quinone; outer membrane assembly lipoprotein YfgL 2381427..2382569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404258 YP_003167340.1 CDS engA NC_013194.1 2382566 2384044 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2382566..2384044 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404259 YP_003167341.1 CDS CAP2UW1_2116 NC_013194.1 2384327 2384860 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: dar:Daro_2004 low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 2384327..2384860 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404260 YP_003167342.1 CDS CAP2UW1_2117 NC_013194.1 2384861 2385481 R KEGG: mgm:Mmc1_1602 hypothetical protein; hypothetical protein complement(2384861..2385481) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404261 YP_003167343.1 CDS CAP2UW1_2118 NC_013194.1 2385462 2390090 R KEGG: mag:amb3329 hypothetical 1041 kDa protein in HypE 3'region; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CheB methylesterase; MCP methyltransferase CheR-type; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2385462..2390090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404262 YP_003167344.1 CDS CAP2UW1_2119 NC_013194.1 2390245 2391069 R PFAM: protein of unknown function DUF323; KEGG: dol:Dole_2017 protein of unknown function DUF323; hypothetical protein complement(2390245..2391069) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404263 YP_003167345.1 CDS CAP2UW1_2120 NC_013194.1 2391251 2391853 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2391251..2391853 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404264 YP_003167346.1 CDS CAP2UW1_2122 NC_013194.1 2392513 2394006 D KEGG: dar:Daro_1941 hypothetical protein; hypothetical protein 2392513..2394006 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404266 YP_003167347.1 CDS CAP2UW1_2123 NC_013194.1 2394096 2394539 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein; hemerythrin-like metal-binding protein 2394096..2394539 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404267 YP_003167348.1 CDS CAP2UW1_2124 NC_013194.1 2394829 2396463 D PFAM: phosphoglucose isomerase (PGI); KEGG: dar:Daro_0581 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 2394829..2396463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404268 YP_003167349.1 CDS CAP2UW1_2125 NC_013194.1 2396518 2398161 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2396518..2398161 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404269 YP_003167350.1 CDS CAP2UW1_2126 NC_013194.1 2398225 2399493 D KEGG: pna:Pnap_1106 glucose-1-phosphate adenylyltransferase; TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase 2398225..2399493 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404270 YP_003167351.1 CDS CAP2UW1_2127 NC_013194.1 2399515 2400957 D TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: pna:Pnap_1107 glycogen/starch synthases, ADP-glucose type; glycogen/starch synthase, ADP-glucose type 2399515..2400957 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404271 YP_003167352.1 CDS CAP2UW1_2128 NC_013194.1 2400980 2402224 D PFAM: conserved hypothetical protein; KEGG: tbd:Tbd_1657 hypothetical protein; hypothetical protein 2400980..2402224 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404272 YP_003167353.1 CDS CAP2UW1_2129 NC_013194.1 2402240 2403346 R catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase complement(2402240..2403346) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404273 YP_003167354.1 CDS CAP2UW1_2130 NC_013194.1 2403431 2403679 R PFAM: Heavy metal transport/detoxification protein; KEGG: azo:azo1356 conserved hypothetical copper chaperon; Heavy metal transport/detoxification protein complement(2403431..2403679) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404274 YP_003167355.1 CDS CAP2UW1_2131 NC_013194.1 2403705 2405921 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1051 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase; copper-translocating P-type ATPase complement(2403705..2405921) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404275 YP_003167356.1 CDS CAP2UW1_2132 NC_013194.1 2405924 2406595 R KEGG: dar:Daro_1049 hypothetical protein; hypothetical protein complement(2405924..2406595) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404276 YP_003167357.1 CDS CAP2UW1_2133 NC_013194.1 2406673 2408070 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2406673..2408070) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404277 YP_003167358.1 CDS CAP2UW1_2134 NC_013194.1 2408167 2408910 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_1047 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/Fnr family transcriptional regulator 2408167..2408910 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404278 YP_003167359.1 CDS CAP2UW1_2135 NC_013194.1 2408940 2409332 R PFAM: Invasion gene expression up-regulator SirB; KEGG: azo:azo3083 hypothetical protein; Invasion gene expression up-regulator SirB complement(2408940..2409332) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404279 YP_003167360.1 CDS CAP2UW1_2136 NC_013194.1 2409373 2410683 R KEGG: dar:Daro_0998 hypothetical protein; hypothetical protein complement(2409373..2410683) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404280 YP_003167361.1 CDS CAP2UW1_2137 NC_013194.1 2410683 2410910 R KEGG: dar:Daro_0997 hypothetical protein; hypothetical protein complement(2410683..2410910) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404281 YP_003167362.1 CDS CAP2UW1_2138 NC_013194.1 2410916 2411380 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: eba:ebA6294 hypothetical protein; Hemerythrin HHE cation-binding domain-containing protein complement(2410916..2411380) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404282 YP_003167363.1 CDS CAP2UW1_2139 NC_013194.1 2411589 2412032 D PFAM: UspA domain protein; KEGG: dar:Daro_0991 UspA; UspA domain-containing protein 2411589..2412032 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404283 YP_003167364.1 CDS CAP2UW1_2140 NC_013194.1 2412264 2412926 D KEGG: dar:Daro_3026 conserved hypothetical protein 2281, catalytic; hypothetical protein 2412264..2412926 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404284 YP_003167365.1 CDS CAP2UW1_2141 NC_013194.1 2412936 2413202 D KEGG: dar:Daro_3025 hypothetical protein; hypothetical protein 2412936..2413202 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404285 YP_003167366.1 CDS CAP2UW1_2142 NC_013194.1 2413189 2413830 D PFAM: NUDIX hydrolase; KEGG: dar:Daro_3024 NUDIX hydrolase; NUDIX hydrolase 2413189..2413830 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404286 YP_003167367.1 CDS CAP2UW1_2144 NC_013194.1 2414466 2415647 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 2414466..2415647 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404288 YP_003167368.1 CDS CAP2UW1_2145 NC_013194.1 2415951 2417240 R PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein; HipA domain-containing protein complement(2415951..2417240) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404289 YP_003167369.1 CDS CAP2UW1_2146 NC_013194.1 2417237 2417551 R PFAM: helix-turn-helix domain protein; KEGG: aba:Acid345_2427 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2417237..2417551) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404290 YP_003167370.1 CDS CAP2UW1_2147 NC_013194.1 2418059 2418235 R hypothetical protein complement(2418059..2418235) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404291 YP_003167371.1 CDS CAP2UW1_2148 NC_013194.1 2418308 2419288 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3900 hypothetical protein; Helix-turn-helix type 11 domain-containing protein complement(2418308..2419288) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404292 YP_003167372.1 CDS CAP2UW1_2149 NC_013194.1 2419556 2424862 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: mgm:Mmc1_2015 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase domain-containing protein 2419556..2424862 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404293 YP_003167373.1 CDS CAP2UW1_2150 NC_013194.1 2424872 2427712 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: mgm:Mmc1_2016 helicase domain protein; helicase domain-containing protein 2424872..2427712 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404294 YP_003167374.1 CDS CAP2UW1_2151 NC_013194.1 2427926 2429464 D PFAM: ATPase; KEGG: eba:ebA1504 conserved hypothetical protein, predicted archaeal ATPase family; ATPase 2427926..2429464 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404295 YP_003167375.1 CDS CAP2UW1_2152 NC_013194.1 2429478 2432954 D KEGG: mgm:Mmc1_2017 putative type II DNA modification enzyme; putative type II DNA modification enzyme 2429478..2432954 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404296 YP_003167376.1 CDS CAP2UW1_2153 NC_013194.1 2432951 2433925 R PFAM: Integrase catalytic region; KEGG: pna:Pnap_0429 integrase, catalytic region; integrase catalytic subunit complement(2432951..2433925) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404297 YP_003167377.1 CDS CAP2UW1_2155 NC_013194.1 2434397 2435755 R PFAM: von Willebrand factor type A; KEGG: ana:all1782 hypothetical protein; von Willebrand factor type A complement(2434397..2435755) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404299 YP_003167378.1 CDS CAP2UW1_2156 NC_013194.1 2435852 2437486 R KEGG: bac:BamMC406_4510 NERD domain protein; NERD domain-containing protein complement(2435852..2437486) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404300 YP_003167379.1 CDS CAP2UW1_2157 NC_013194.1 2437551 2438225 R KEGG: eba:ebA6011 cobyrinic acid a,c-diamide synthase:dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase complement(2437551..2438225) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404301 YP_003167380.1 CDS CAP2UW1_2158 NC_013194.1 2438222 2438992 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_2899 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(2438222..2438992) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404302 YP_003167381.1 CDS CAP2UW1_2159 NC_013194.1 2438973 2439737 R PFAM: alpha/beta hydrolase fold; KEGG: azo:azo1890 BioH protein; carboxylesterase complement(2438973..2439737) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404303 YP_003167382.1 CDS CAP2UW1_2160 NC_013194.1 2439734 2440897 R KEGG: har:HEAR1669 7-keto-8-aminopelargonic acid synthetase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase complement(2439734..2440897) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404304 YP_003167383.1 CDS CAP2UW1_2161 NC_013194.1 2440894 2442225 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: dar:Daro_2895 aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2440894..2442225) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404305 YP_003167384.1 CDS CAP2UW1_2162 NC_013194.1 2442246 2443424 R KEGG: dar:Daro_2894 hypothetical protein; hypothetical protein complement(2442246..2443424) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404306 YP_003167385.1 CDS CAP2UW1_2163 NC_013194.1 2443660 2444133 R KEGG: ote:Oter_1104 hypothetical protein; hypothetical protein complement(2443660..2444133) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404307 YP_003167386.1 CDS CAP2UW1_2164 NC_013194.1 2444186 2444671 R KEGG: dac:Daci_1499 hypothetical protein; hypothetical protein complement(2444186..2444671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404308 YP_003167387.1 CDS CAP2UW1_2165 NC_013194.1 2444664 2444813 R hypothetical protein complement(2444664..2444813) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404309 YP_003167388.1 CDS CAP2UW1_2166 NC_013194.1 2445063 2446703 R PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: dar:Daro_3112 chemotaxis sensory transducer; Cache sensor-containing methyl-accepting chemotaxis sensory transducer complement(2445063..2446703) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404310 YP_003167389.1 CDS CAP2UW1_2167 NC_013194.1 2447076 2447936 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_3057 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2447076..2447936) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404311 YP_003167390.1 CDS CAP2UW1_2168 NC_013194.1 2448222 2448803 D PFAM: protein of unknown function DUF1555; KEGG: mhu:Mhun_2702 hypothetical protein; hypothetical protein 2448222..2448803 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404312 YP_003167391.1 CDS CAP2UW1_2169 NC_013194.1 2449101 2449733 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: lch:Lcho_0187 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2449101..2449733 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404313 YP_003167392.1 CDS CAP2UW1_2170 NC_013194.1 2449981 2451129 D KEGG: pin:Ping_3331 ABC-type uncharacterized transport system, periplasmic component; ABC transporter substrate-binding protein 2449981..2451129 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404314 YP_003167393.1 CDS CAP2UW1_2171 NC_013194.1 2451177 2451980 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_7068 hypothetical protein; type 11 methyltransferase 2451177..2451980 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404315 YP_003167394.1 CDS CAP2UW1_2172 NC_013194.1 2451977 2454382 D PFAM: major facilitator superfamily MFS_1; KEGG: bbr:BB1643 putative inner membrane transport protein; major facilitator superfamily protein 2451977..2454382 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404316 YP_003167395.1 CDS CAP2UW1_2173 NC_013194.1 2454407 2455477 D PFAM: alanine racemase domain protein; KEGG: pac:PPA2282 amino acid racemase; alanine racemase domain-containing protein 2454407..2455477 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404317 YP_003167396.1 CDS CAP2UW1_2174 NC_013194.1 2455728 2457029 D PFAM: Patatin; KEGG: rpd:RPD_2292 patatin; Patatin 2455728..2457029 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404318 YP_003167397.1 CDS CAP2UW1_2175 NC_013194.1 2457051 2458610 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce0689 hypothetical protein; Radical SAM domain-containing protein 2457051..2458610 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404319 YP_003167398.1 CDS CAP2UW1_2176 NC_013194.1 2458652 2461663 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: tbd:Tbd_1269 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2458652..2461663 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404320 YP_003167399.1 CDS CAP2UW1_2177 NC_013194.1 2461775 2463133 D KEGG: gdi:GDI0387 hypothetical protein; hypothetical protein 2461775..2463133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404321 YP_003167400.1 CDS CAP2UW1_2178 NC_013194.1 2463269 2464180 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tbd:Tbd_2604 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2463269..2464180) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404322 YP_003167401.1 CDS CAP2UW1_2179 NC_013194.1 2464296 2464652 D TIGRFAM: ribosomal subunit interface protein; KEGG: mmw:Mmwyl1_3632 putative sigma 54 modulation protein/ribosomal protein S30EA; putative sigma 54 modulation protein/30S ribosomal protein S30EA 2464296..2464652 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404323 YP_003167402.1 CDS CAP2UW1_2180 NC_013194.1 2464808 2464990 D hypothetical protein 2464808..2464990 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404324 YP_003167403.1 CDS CAP2UW1_2181 NC_013194.1 2464987 2465970 D PFAM: Integral membrane protein TerC; KEGG: lch:Lcho_4156 integral membrane protein TerC; Integral membrane protein TerC 2464987..2465970 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404325 YP_003167404.1 CDS CAP2UW1_2182 NC_013194.1 2465967 2466473 D PFAM: UspA domain protein; KEGG: lch:Lcho_4155 UspA domain protein; UspA domain-containing protein 2465967..2466473 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404326 YP_003167405.1 CDS CAP2UW1_2183 NC_013194.1 2466570 2467250 D PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein; hypothetical protein 2466570..2467250 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404327 YP_003167406.1 CDS CAP2UW1_2184 NC_013194.1 2467256 2467768 D KEGG: nar:Saro_0394 hypothetical protein; hypothetical protein 2467256..2467768 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404328 YP_003167407.1 CDS CAP2UW1_2185 NC_013194.1 2467765 2468340 D PFAM: SNARE associated Golgi protein; KEGG: aeh:Mlg_1827 hypothetical protein; hypothetical protein 2467765..2468340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404329 YP_003167408.1 CDS CAP2UW1_2186 NC_013194.1 2468342 2469205 D PFAM: Ion transport protein; KEGG: psa:PST_3753 voltage-gated sodium channel subunit; Ion transport protein 2468342..2469205 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404330 YP_003167409.1 CDS CAP2UW1_2187 NC_013194.1 2469227 2470108 D putative metalloprotease; heat shock protein HtpX 2469227..2470108 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404331 YP_003167410.1 CDS CAP2UW1_2189 NC_013194.1 2470563 2471318 D KEGG: cph:Cpha266_1987 hypothetical protein; hypothetical protein 2470563..2471318 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404333 YP_003167411.1 CDS CAP2UW1_2190 NC_013194.1 2471436 2471726 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: rso:RSc0264 hypothetical protein; prevent-host-death family protein 2471436..2471726 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404334 YP_003167412.1 CDS CAP2UW1_2191 NC_013194.1 2471746 2472135 D KEGG: rso:RSc0263 hypothetical protein; hypothetical protein 2471746..2472135 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404335 YP_003167413.1 CDS CAP2UW1_2192 NC_013194.1 2472216 2472521 R KEGG: net:Neut_2230 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 complement(2472216..2472521) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404336 YP_003167414.1 CDS CAP2UW1_2193 NC_013194.1 2472511 2473530 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: net:Neut_2229 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 complement(2472511..2473530) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404337 YP_003167415.1 CDS CAP2UW1_2194 NC_013194.1 2473547 2473834 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: net:Neut_2228 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 complement(2473547..2473834) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404338 YP_003167416.1 CDS CAP2UW1_2195 NC_013194.1 2474003 2474275 R KEGG: lch:Lcho_2219 hypothetical protein; hypothetical protein complement(2474003..2474275) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404339 YP_003167417.1 CDS CAP2UW1_2196 NC_013194.1 2474672 2475139 R KEGG: npu:Npun_R5806 hypothetical protein; hypothetical protein complement(2474672..2475139) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404340 YP_003167418.1 CDS CAP2UW1_2197 NC_013194.1 2479959 2481065 R KEGG: neu:NE0117 hypothetical protein; hypothetical protein complement(2479959..2481065) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404341 YP_003167419.1 CDS CAP2UW1_2198 NC_013194.1 2481084 2482250 R TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; PFAM: CRISPR-associated protein DxTHG; KEGG: neu:NE0115 hypothetical protein; CRISPR-associated protein complement(2481084..2482250) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404342 YP_003167420.1 CDS CAP2UW1_2199 NC_013194.1 2482336 2483499 R TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: hha:Hhal_0631 CRISPR-associated RAMP protein, Cmr6 family; Cmr6 family CRISPR-associated RAMP protein complement(2482336..2483499) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404343 YP_003167421.1 CDS CAP2UW1_2200 NC_013194.1 2483496 2483858 R TIGRFAM: CRISPR-associated protein, Cmr5 family; PFAM: CRISPR-associated protein TM1791.1; KEGG: hha:Hhal_0630 CRISPR-associated protein, Cmr5 family; Cmr5 family CRISPR-associated protein complement(2483496..2483858) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404344 YP_003167422.1 CDS CAP2UW1_2201 NC_013194.1 2483855 2484772 R TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: hha:Hhal_0629 CRISPR-associated RAMP protein, Cmr4 family; Cmr4 family CRISPR-associated RAMP protein complement(2483855..2484772) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404345 YP_003167423.1 CDS CAP2UW1_2202 NC_013194.1 2484845 2486026 R KEGG: hha:Hhal_0628 CRISPR-associated protein, Cmr3 family; Cmr3 family CRISPR-associated protein complement(2484845..2486026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404346 YP_003167424.1 CDS CAP2UW1_2203 NC_013194.1 2486026 2488923 R TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: hha:Hhal_0627 CRISPR-associated protein, Crm2 family; Crm2 family CRISPR-associated protein complement(2486026..2488923) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404347 YP_003167425.1 CDS CAP2UW1_2204 NC_013194.1 2488920 2490029 R KEGG: hha:Hhal_0626 hypothetical protein; hypothetical protein complement(2488920..2490029) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404348 YP_003167426.1 CDS CAP2UW1_2205 NC_013194.1 2490145 2491347 R TIGRFAM: CRISPR-associated protein, NE0113 family; PFAM: CRISPR-associated protein NE0113; KEGG: net:Neut_2225 CRISPR-associated protein, NE0113 family protein; CRISPR-associated protein complement(2490145..2491347) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404349 YP_003167427.1 CDS CAP2UW1_2206 NC_013194.1 2491618 2493870 R TIGRFAM: YD repeat protein; PFAM: WD-40 repeat protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: scl:sce4551 protein kinase; YD repeat-containing protein complement(2491618..2493870) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404350 YP_003167428.1 CDS CAP2UW1_2207 NC_013194.1 2493979 2495592 R KEGG: chu:CHU_1024 possible membrane protein; hypothetical protein complement(2493979..2495592) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404351 YP_003167429.1 CDS CAP2UW1_2208 NC_013194.1 2495570 2497087 R KEGG: chu:CHU_1023 hypothetical protein; hypothetical protein complement(2495570..2497087) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404352 YP_003167430.1 CDS CAP2UW1_2209 NC_013194.1 2497116 2497397 D hypothetical protein 2497116..2497397 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404353 YP_003167431.1 CDS CAP2UW1_2210 NC_013194.1 2497449 2498564 D PFAM: Extracellular ligand-binding receptor; KEGG: glo:Glov_0532 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 2497449..2498564 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404354 YP_003167432.1 CDS CAP2UW1_2211 NC_013194.1 2498557 2499699 D PFAM: Extracellular ligand-binding receptor; KEGG: ppd:Ppro_1970 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 2498557..2499699 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404355 YP_003167433.1 CDS CAP2UW1_2212 NC_013194.1 2499704 2504809 D KEGG: har:HEAR1210 hypothetical protein; putative signal peptide; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2499704..2504809 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404356 YP_003167434.1 CDS CAP2UW1_2214 NC_013194.1 2506830 2507951 R PFAM: ABC-2 type transporter; KEGG: rle:pRL90045 putative ABC transporter permease component; ABC transporter complement(2506830..2507951) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404358 YP_003167435.1 CDS CAP2UW1_2215 NC_013194.1 2507954 2510695 R PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related; ABC transporter complement(2507954..2510695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404359 YP_003167436.1 CDS CAP2UW1_2216 NC_013194.1 2510692 2511849 R PFAM: secretion protein HlyD family protein; KEGG: pap:PSPA7_5975 hypothetical protein; secretion protein HlyD family protein complement(2510692..2511849) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404360 YP_003167437.1 CDS CAP2UW1_2217 NC_013194.1 2512027 2513502 R PFAM: Erythromycin esterase; KEGG: mxa:MXAN_0826 erythromycin esterase family protein; Erythromycin esterase complement(2512027..2513502) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404361 YP_003167438.1 CDS CAP2UW1_2218 NC_013194.1 2513520 2514917 R PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3908 putative serine/threonine protein kinase; serine/threonine protein kinase complement(2513520..2514917) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404362 YP_003167439.1 CDS CAP2UW1_2219 NC_013194.1 2514936 2515808 R PFAM: histidine kinase HAMP region domain protein; KEGG: azo:azo3909 probable sensor protein; putative sensor with HAMP domain-containing protein complement(2514936..2515808) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404363 YP_003167440.1 CDS CAP2UW1_2220 NC_013194.1 2516375 2517388 D KEGG: cyt:cce_3036 hypothetical protein; hypothetical protein 2516375..2517388 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404364 YP_003167441.1 CDS CAP2UW1_2221 NC_013194.1 2517576 2518475 R KEGG: dol:Dole_2678 hypothetical protein; hypothetical protein complement(2517576..2518475) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404365 YP_003167442.1 CDS CAP2UW1_2222 NC_013194.1 2518472 2519566 R KEGG: pae:PA0736 hypothetical protein; hypothetical protein complement(2518472..2519566) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404366 YP_003167443.1 CDS CAP2UW1_2223 NC_013194.1 2519838 2522345 D KEGG: mrd:Mrad2831_1767 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; multi-sensor hybrid histidine kinase 2519838..2522345 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404367 YP_003167444.1 CDS CAP2UW1_2224 NC_013194.1 2522426 2524123 R KEGG: dar:Daro_0511 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(2522426..2524123) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404368 YP_003167445.1 CDS CAP2UW1_2225 NC_013194.1 2524313 2524789 D PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: dar:Daro_0512 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 2524313..2524789 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404369 YP_003167446.1 CDS CAP2UW1_2226 NC_013194.1 2524862 2526067 D PFAM: Patatin; KEGG: pol:Bpro_4614 patatin; Patatin 2524862..2526067 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404370 YP_003167447.1 CDS CAP2UW1_2227 NC_013194.1 2526119 2527195 R KEGG: reh:H16_B1608 predicted secreted hydrolase; secreted hydrolase complement(2526119..2527195) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404371 YP_003167448.1 CDS CAP2UW1_2228 NC_013194.1 2527212 2529719 R PFAM: protein of unknown function DUF214; KEGG: reh:H16_B1609 ABC-type transporter, duplicated permease domains; hypothetical protein complement(2527212..2529719) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404372 YP_003167449.1 CDS CAP2UW1_2229 NC_013194.1 2529716 2530399 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA6806 ABC transporter, ATP-binding protein; ABC transporter complement(2529716..2530399) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404373 YP_003167450.1 CDS CAP2UW1_2230 NC_013194.1 2530389 2531777 R PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: lch:Lcho_0282 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2530389..2531777) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404374 YP_003167451.1 CDS CAP2UW1_2231 NC_013194.1 2531911 2533143 R TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bpt:Bpet1866 putative peptidoglycan-binding protein; lytic murein transglycosylase complement(2531911..2533143) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404375 YP_003167452.1 CDS CAP2UW1_2232 NC_013194.1 2533240 2533644 R KEGG: dar:Daro_3301 hypothetical protein; hypothetical protein complement(2533240..2533644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404376 YP_003167453.1 CDS CAP2UW1_2233 NC_013194.1 2533997 2534728 R KEGG: asa:ASA_2038 hypothetical protein; hypothetical protein complement(2533997..2534728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404377 YP_003167454.1 CDS CAP2UW1_2234 NC_013194.1 2534840 2536258 D PFAM: Aldehyde Dehydrogenase; KEGG: reh:H16_A0232 NAD-dependent aldehyde dehydrogenase; aldehyde dehydrogenase 2534840..2536258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404378 YP_003167455.1 CDS CAP2UW1_2235 NC_013194.1 2536255 2536758 D KEGG: pna:Pnap_0433 hypothetical protein; hypothetical protein 2536255..2536758 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404379 YP_003167456.1 CDS CAP2UW1_2236 NC_013194.1 2536758 2538365 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: mpt:Mpe_A0350 oxidoreductase, GMC family; glucose-methanol-choline oxidoreductase 2536758..2538365 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404380 YP_003167457.1 CDS CAP2UW1_2237 NC_013194.1 2538381 2539334 D PFAM: lipase class 2; protein of unknown function DUF1234; PGAP1 family protein; KEGG: dar:Daro_1591 putative lipase transmembrane protein; PGAP1 family protein 2538381..2539334 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404381 YP_003167458.1 CDS CAP2UW1_2238 NC_013194.1 2539512 2539982 D KEGG: reu:Reut_A0399 general secretion pathway protein H; general secretion pathway protein H 2539512..2539982 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404382 YP_003167459.1 CDS CAP2UW1_2239 NC_013194.1 2539976 2540557 D KEGG: aav:Aave_3549 Tfp pilus assembly protein FimT; Tfp pilus assembly protein FimT 2539976..2540557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404383 YP_003167460.1 CDS CAP2UW1_2240 NC_013194.1 2540568 2541188 D TIGRFAM: type IV pilus modification protein PilV; KEGG: reh:H16_A0416 type IV pilus assembly protein PilV; type IV pilus modification protein PilV 2540568..2541188 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404384 YP_003167461.1 CDS CAP2UW1_2241 NC_013194.1 2541188 2542270 D KEGG: mca:MCA0089 pilin-like protein; Tfp pilus assembly protein PilW-like protein 2541188..2542270 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404385 YP_003167462.1 CDS CAP2UW1_2242 NC_013194.1 2542281 2542760 D KEGG: reu:Reut_A0403 probable transmembrane protein; hypothetical protein 2542281..2542760 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404386 YP_003167463.1 CDS CAP2UW1_2243 NC_013194.1 2542795 2548368 D KEGG: shn:Shewana3_3129 type IV pilin biogenesis protein, putative; Tfp pilus assembly protein tip-associated adhesin PilY1-like protein 2542795..2548368 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404387 YP_003167464.1 CDS CAP2UW1_2244 NC_013194.1 2548508 2549044 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: tbd:Tbd_2268 TonB domain protein; TonB family protein 2548508..2549044 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404388 YP_003167465.1 CDS CAP2UW1_2245 NC_013194.1 2549214 2551562 D PFAM: fatty acid cistrans isomerase; KEGG: mms:mma_1197 fatty acid cis/trans isomerase; fatty acid cistrans isomerase 2549214..2551562 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404389 YP_003167466.1 CDS CAP2UW1_2246 NC_013194.1 2551687 2553633 D KEGG: hne:HNE_0665 putative lipoprotein; putative lipoprotein 2551687..2553633 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404390 YP_003167467.1 CDS CAP2UW1_2247 NC_013194.1 2553846 2555522 R PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA1206 putative acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase complement(2553846..2555522) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404391 YP_003167468.1 CDS CAP2UW1_2248 NC_013194.1 2556019 2556990 D PFAM: Helix-turn-helix type 11 domain protein; KEGG: rfr:Rfer_3900 hypothetical protein; Helix-turn-helix type 11 domain-containing protein 2556019..2556990 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404392 YP_003167469.1 CDS CAP2UW1_2249 NC_013194.1 2556983 2559598 D KEGG: rru:Rru_A0340 CRISPR-associated helicase, Cas3 family; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 2556983..2559598 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404393 YP_003167470.1 CDS CAP2UW1_2250 NC_013194.1 2559619 2561196 D TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: gbe:GbCGDNIH1_1693 hypothetical protein; Cse1 family CRISPR-associated protein 2559619..2561196 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404394 YP_003167471.1 CDS CAP2UW1_2251 NC_013194.1 2561193 2561780 D TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: mca:MCA0934 CRISPR-associated protein; Cse2 family CRISPR-associated protein 2561193..2561780 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404395 YP_003167472.1 CDS CAP2UW1_2252 NC_013194.1 2561802 2563004 D TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: gbe:GbCGDNIH1_1695 hypothetical protein; Cse4 family CRISPR-associated protein 2561802..2563004 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404396 YP_003167473.1 CDS CAP2UW1_2253 NC_013194.1 2563006 2563719 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: rru:Rru_A0345 CRISPR-associated protein, Cas5e family; Cas5 family CRISPR-associated protein 2563006..2563719 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404397 YP_003167474.1 CDS CAP2UW1_2254 NC_013194.1 2563716 2564453 D TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: mca:MCA0931 CRISPR-associated CT1974 family protein; Cse3 family CRISPR-associated protein 2563716..2564453 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404398 YP_003167475.1 CDS CAP2UW1_2255 NC_013194.1 2564447 2565340 D TIGRFAM: CRISPR-associated protein Cas1; KEGG: rru:Rru_A0347 CRISPR-associated protein, Cas1 family; CRISPR-associated protein Cas1 2564447..2565340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404399 YP_003167476.1 CDS CAP2UW1_2256 NC_013194.1 2565312 2565608 D TIGRFAM: CRISPR-associated protein Cas2; KEGG: dsh:Dshi_3221 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 2565312..2565608 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404400 YP_003167477.1 CDS CAP2UW1_2257 NC_013194.1 2575273 2575515 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: Putative addiction module component CHP02574 family protein; KEGG: lch:Lcho_1156 addiction module component, TIGR02574 family; addiction module protein complement(2575273..2575515) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404401 YP_003167478.1 CDS CAP2UW1_2258 NC_013194.1 2575590 2575865 D KEGG: lch:Lcho_1155 CRISPR-associated protein Cas4; hypothetical protein 2575590..2575865 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404402 YP_003167479.1 CDS CAP2UW1_2259 NC_013194.1 2576231 2576617 D PFAM: ribosomal protein S6; KEGG: azo:azo0718 30S ribosomal protein S6; 30S ribosomal protein S6 2576231..2576617 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404403 YP_003167480.1 CDS CAP2UW1_2260 NC_013194.1 2576677 2576961 D KEGG: dar:Daro_1217 primosomal replication protein N; primosomal replication protein N 2576677..2576961 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404404 YP_003167481.1 CDS CAP2UW1_2261 NC_013194.1 2576933 2577208 D PFAM: ribosomal protein S18; KEGG: dar:Daro_1218 SSU ribosomal protein S18P; 30S ribosomal protein S18 2576933..2577208 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404405 YP_003167482.1 CDS CAP2UW1_2262 NC_013194.1 2577223 2577681 D PFAM: ribosomal protein L9; KEGG: dar:Daro_1219 LSU ribosomal protein L9P; 50S ribosomal protein L9 2577223..2577681 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404406 YP_003167483.1 CDS CAP2UW1_2263 NC_013194.1 2577825 2579270 D KEGG: dar:Daro_1220 primary replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 2577825..2579270 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404407 YP_003167484.1 CDS CAP2UW1_2264 NC_013194.1 2579299 2580582 R PFAM: transglutaminase domain protein; KEGG: dar:Daro_1221 transglutaminase-like; transglutaminase domain-containing protein complement(2579299..2580582) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404408 YP_003167485.1 CDS CAP2UW1_2265 NC_013194.1 2580723 2582150 R PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: azo:azo2198 putative PhoH-related protein; PhoH family protein complement(2580723..2582150) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404409 YP_003167486.1 CDS CAP2UW1_2266 NC_013194.1 2582294 2582770 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1223 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(2582294..2582770) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404410 YP_003167487.1 CDS CAP2UW1_2267 NC_013194.1 2582960 2584171 R KEGG: tbd:Tbd_1726 L-sorbosone dehydrogenase, putative; L-sorbosone dehydrogenase complement(2582960..2584171) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404411 YP_003167488.1 CDS CAP2UW1_2268 NC_013194.1 2584402 2585019 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ppg:PputGB1_5036 channel protein, hemolysin III family; hemolysin III family channel protein 2584402..2585019 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404412 YP_003167489.1 CDS tig NC_013194.1 2585443 2586783 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2585443..2586783 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404413 YP_003167490.1 CDS CAP2UW1_2270 NC_013194.1 2586815 2587444 D KEGG: dar:Daro_1718 ATP-dependent Clp protease proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 2586815..2587444 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404414 YP_003167491.1 CDS clpX NC_013194.1 2587518 2588789 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2587518..2588789 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404415 YP_003167492.1 CDS CAP2UW1_2272 NC_013194.1 2588873 2591293 D KEGG: azo:azo2069 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2588873..2591293 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404416 YP_003167493.1 CDS CAP2UW1_2273 NC_013194.1 2591665 2593572 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dar:Daro_1933 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2591665..2593572 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404419 YP_003167494.1 CDS groEL NC_013194.1 2593666 2595318 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2593666..2595318) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404420 YP_003167495.1 CDS CAP2UW1_2275 NC_013194.1 2595391 2595681 R PFAM: chaperonin Cpn10; KEGG: eba:ebB35 chaperonins cpn10 (10 kDa subunit); chaperonin Cpn10 complement(2595391..2595681) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404421 YP_003167496.1 CDS CAP2UW1_2276 NC_013194.1 2596140 2597111 R PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pol:Bpro_3340 transposase IS116/IS110/IS902; transposase IS116/IS110/IS902 family protein complement(2596140..2597111) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404422 YP_003167497.1 CDS CAP2UW1_2277 NC_013194.1 2597551 2597985 D KEGG: psa:PST_0577 hypothetical protein; hypothetical protein 2597551..2597985 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404423 YP_003167498.1 CDS CAP2UW1_2278 NC_013194.1 2597991 2599019 R KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein complement(2597991..2599019) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404424 YP_003167499.1 CDS CAP2UW1_2279 NC_013194.1 2599212 2599820 D KEGG: rfr:Rfer_1217 hypothetical protein; hypothetical protein 2599212..2599820 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404425 YP_003167500.1 CDS CAP2UW1_2280 NC_013194.1 2605687 2606238 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: rxy:Rxyl_2864 methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 2605687..2606238 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404432 YP_003167501.1 CDS CAP2UW1_2281 NC_013194.1 2606222 2607055 R PFAM: alpha/beta hydrolase fold; KEGG: nar:Saro_2613 alpha/beta hydrolase; alpha/beta hydrolase fold protein complement(2606222..2607055) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404433 YP_003167502.1 CDS CAP2UW1_2282 NC_013194.1 2607148 2608092 D PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0655 beta-lactamase-like; beta-lactamase domain-containing protein 2607148..2608092 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404434 YP_003167503.1 CDS CAP2UW1_2283 NC_013194.1 2608094 2608726 R KEGG: dar:Daro_3968 hypothetical protein; hypothetical protein complement(2608094..2608726) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404435 YP_003167504.1 CDS CAP2UW1_2284 NC_013194.1 2608743 2609039 R PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3969 hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase expression/formation protein HypC/HupF complement(2608743..2609039) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404436 YP_003167505.1 CDS CAP2UW1_2285 NC_013194.1 2609039 2609530 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: dar:Daro_3970 HybD peptidase. Aspartic peptidase. MEROPS family A31; hydrogenase maturation protease complement(2609039..2609530) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404437 YP_003167506.1 CDS CAP2UW1_2286 NC_013194.1 2609603 2611306 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: dar:Daro_3971 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit complement(2609603..2611306) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404438 YP_003167507.1 CDS CAP2UW1_2287 NC_013194.1 2611330 2612019 R KEGG: rfr:Rfer_4090 predicted hydrogenase 2 cytochrome b type component; hydrogenase 2 cytochrome b type component complement(2611330..2612019) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404439 YP_003167508.1 CDS CAP2UW1_2288 NC_013194.1 2612157 2612354 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(2612157..2612354) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404440 YP_003167509.1 CDS CAP2UW1_2289 NC_013194.1 2612351 2613145 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(2612351..2613145) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404441 YP_003167510.1 CDS CAP2UW1_2290 NC_013194.1 2613148 2614470 R PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit complement(2613148..2614470) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404442 YP_003167511.1 CDS CAP2UW1_2291 NC_013194.1 2614600 2615124 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(2614600..2615124) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404443 YP_003167512.1 CDS CAP2UW1_2292 NC_013194.1 2615263 2615766 R KEGG: rfr:Rfer_4090 predicted hydrogenase 2 cytochrome b type component; hydrogenase 2 cytochrome b type component complement(2615263..2615766) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404444 YP_003167513.1 CDS CAP2UW1_2293 NC_013194.1 2615763 2616797 R Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA complement(2615763..2616797) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404445 YP_003167514.1 CDS CAP2UW1_2294 NC_013194.1 2616799 2617986 R KEGG: dar:Daro_3974 Ni-Fe hydrogenase, small subunit:twin-arginine translocation pathway signal; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA complement(2616799..2617986) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404446 YP_003167515.1 CDS CAP2UW1_2295 NC_013194.1 2618490 2619875 D KEGG: dar:Daro_3946 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 2618490..2619875 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404447 YP_003167516.1 CDS CAP2UW1_2296 NC_013194.1 2620424 2621038 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: dar:Daro_1296 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(2620424..2621038) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404449 YP_003167517.1 CDS CAP2UW1_2297 NC_013194.1 2621035 2623539 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: dar:Daro_1295 DNA translocase FtsK; cell division FtsK/SpoIIIE complement(2621035..2623539) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404450 YP_003167518.1 CDS CAP2UW1_2298 NC_013194.1 2623554 2624279 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: dar:Daro_1294 cyclic nucleotide-binding:bacterial regulatory protein, Crp; Crp/Fnr family transcriptional regulator complement(2623554..2624279) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404451 YP_003167519.1 CDS CAP2UW1_2299 NC_013194.1 2624443 2625408 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dar:Daro_1293 thioredoxin reductase; thioredoxin reductase 2624443..2625408 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404452 YP_003167520.1 CDS CAP2UW1_2300 NC_013194.1 2625479 2626045 D PFAM: Smr protein/MutS2; KEGG: azo:azo1362 hypothetical protein; Smr protein/MutS2 2625479..2626045 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404453 YP_003167521.1 CDS CAP2UW1_2301 NC_013194.1 2626111 2626449 R PFAM: nitrogen regulatory protein P-II; KEGG: mfa:Mfla_1885 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II complement(2626111..2626449) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404454 YP_003167522.1 CDS CAP2UW1_2302 NC_013194.1 2626511 2628121 R NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(2626511..2628121) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404455 YP_003167523.1 CDS CAP2UW1_2303 NC_013194.1 2628185 2628733 R PFAM: Inorganic pyrophosphatase; KEGG: dar:Daro_1289 inorganic pyrophosphatase; Inorganic diphosphatase complement(2628185..2628733) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404456 YP_003167524.1 CDS CAP2UW1_2304 NC_013194.1 2628897 2629604 R PFAM: Glutathione S-transferase domain; KEGG: hch:HCH_06415 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(2628897..2629604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404457 YP_003167525.1 CDS CAP2UW1_2305 NC_013194.1 2629670 2632204 D PFAM: protein of unknown function DUF323; KEGG: fre:Franean1_2751 WD-40 repeat protein; hypothetical protein 2629670..2632204 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404458 YP_003167526.1 CDS CAP2UW1_2306 NC_013194.1 2632233 2635169 R KEGG: azo:azo3381 hypothetical signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2632233..2635169) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404459 YP_003167527.1 CDS CAP2UW1_2307 NC_013194.1 2635253 2636785 R KEGG: ote:Oter_0553 hypothetical protein; hypothetical protein complement(2635253..2636785) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404460 YP_003167528.1 CDS CAP2UW1_2308 NC_013194.1 2636869 2638161 R PFAM: Extracellular ligand-binding receptor; KEGG: ppd:Ppro_1970 extracellular ligand-binding receptor; Extracellular ligand-binding receptor complement(2636869..2638161) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404461 YP_003167529.1 CDS CAP2UW1_2309 NC_013194.1 2638430 2639698 D PFAM: protein of unknown function DUF344; KEGG: dar:Daro_0434 protein of unknown function DUF344; hypothetical protein 2638430..2639698 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404462 YP_003167530.1 CDS CAP2UW1_2310 NC_013194.1 2639773 2640420 R TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: bbr:BB3255 putative glutathione-S-transferase; maleylacetoacetate isomerase complement(2639773..2640420) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404463 YP_003167531.1 CDS CAP2UW1_2311 NC_013194.1 2640470 2641501 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA3300 potential fumarylacetoacetate hydrolase (extradiol catechol pathway); fumarylacetoacetate (FAA) hydrolase complement(2640470..2641501) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404464 YP_003167532.1 CDS CAP2UW1_2312 NC_013194.1 2641598 2642134 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: azo:azo3679 glyoxalase-family protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(2641598..2642134) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404465 YP_003167533.1 CDS CAP2UW1_2313 NC_013194.1 2642379 2642984 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: azo:azo1316 putative ATP binding protein; ABC transporter 2642379..2642984 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404466 YP_003167534.1 CDS CAP2UW1_2314 NC_013194.1 2642981 2643784 D PFAM: conserved hypothetical protein; KEGG: azo:azo1315 hypothetical protein; hypothetical protein 2642981..2643784 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404467 YP_003167535.1 CDS CAP2UW1_2315 NC_013194.1 2644194 2644745 D PFAM: NADPH-dependent FMN reductase; KEGG: har:HEAR1499 conserved hypothetical protein, putative NADPH-dependent FMN reductase IPR005025; NADPH-dependent FMN reductase 2644194..2644745 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404468 YP_003167536.1 CDS CAP2UW1_2316 NC_013194.1 2645003 2647318 D PFAM: AsmA family protein; KEGG: bbr:BB0937 hypothetical protein; AsmA family protein 2645003..2647318 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404469 YP_003167537.1 CDS CAP2UW1_2317 NC_013194.1 2647490 2648332 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_A2674 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2647490..2648332 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404470 YP_003167538.1 CDS CAP2UW1_2318 NC_013194.1 2648382 2648708 D KEGG: dar:Daro_1730 hypothetical protein; hypothetical protein 2648382..2648708 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404471 YP_003167539.1 CDS CAP2UW1_2319 NC_013194.1 2648920 2651601 R PFAM: Hemolysin-type calcium-binding region; KEGG: cpb:Cphamn1_0514 RTX toxins and related Ca2+-binding protein; Hemolysin-type calcium-binding protein complement(2648920..2651601) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404472 YP_003167540.1 CDS CAP2UW1_2320 NC_013194.1 2651844 2655122 D PFAM: protein of unknown function DUF323; KEGG: rrs:RoseRS_0904 protein of unknown function DUF323; hypothetical protein 2651844..2655122 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404473 YP_003167541.1 CDS CAP2UW1_2321 NC_013194.1 2655195 2656289 R KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(2655195..2656289) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404474 YP_003167542.1 CDS CAP2UW1_2322 NC_013194.1 2656557 2656685 R KEGG: mgm:Mmc1_1133 protein of unknown function DUF323; hypothetical protein complement(2656557..2656685) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404475 YP_003167543.1 CDS CAP2UW1_2323 NC_013194.1 2656863 2659517 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: hau:Haur_3236 protein of unknown function DUF323; hypothetical protein complement(2656863..2659517) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404476 YP_003167544.1 CDS CAP2UW1_2324 NC_013194.1 2659490 2661217 R SMART: TIR protein; KEGG: gvi:gll4095 hypothetical protein; TIR protein complement(2659490..2661217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404477 YP_003167545.1 CDS CAP2UW1_2325 NC_013194.1 2661476 2662492 R PFAM: Catalase domain protein; KEGG: mpt:Mpe_A1580 putative catalase; Catalase domain-containing protein complement(2661476..2662492) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404478 YP_003167546.1 CDS CAP2UW1_2326 NC_013194.1 2662706 2664976 R KEGG: har:HEAR1667 putative nitric oxide reductase NorZ; putative nitric oxide reductase NorZ complement(2662706..2664976) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404479 YP_003167547.1 CDS CAP2UW1_2327 NC_013194.1 2665138 2665578 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: regulatory protein GntR HTH; protein of unknown function UPF0074; Helix-turn-helix type 11 domain protein; KEGG: pla:Plav_2689 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator complement(2665138..2665578) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404480 YP_003167548.1 CDS CAP2UW1_2329 NC_013194.1 2667676 2668911 R PFAM: high-affinity nickel-transporter; KEGG: bvi:Bcep1808_7462 high-affinity nickel-transporter; high-affinity nickel-transporter complement(2667676..2668911) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404485 YP_003167549.1 CDS CAP2UW1_2330 NC_013194.1 2668920 2669189 R PFAM: protein of unknown function DUF156; KEGG: vei:Veis_2756 protein of unknown function DUF156; hypothetical protein complement(2668920..2669189) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404486 YP_003167550.1 CDS CAP2UW1_2331 NC_013194.1 2669489 2670853 D TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: dar:Daro_3555 chromate transporter; chromate transporter 2669489..2670853 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404487 YP_003167551.1 CDS CAP2UW1_2332 NC_013194.1 2670885 2672963 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2670885..2672963) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404488 YP_003167552.1 CDS CAP2UW1_2333 NC_013194.1 2673139 2674341 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 2673139..2674341 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404489 YP_003167553.1 CDS CAP2UW1_2334 NC_013194.1 2674445 2676322 R KEGG: dar:Daro_2001 hypothetical protein; hypothetical protein complement(2674445..2676322) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404490 YP_003167554.1 CDS CAP2UW1_2335 NC_013194.1 2677348 2678589 D PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: sse:Ssed_3188 HD domain protein; metal dependent phosphohydrolase 2677348..2678589 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404492 YP_003167555.1 CDS CAP2UW1_2336 NC_013194.1 2678615 2680126 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: dar:Daro_1922 glycerol kinase; glycerol kinase complement(2678615..2680126) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404493 YP_003167556.1 CDS CAP2UW1_2337 NC_013194.1 2680213 2680794 R PFAM: regulatory protein TetR; KEGG: dar:Daro_1210 regulatory protein, TetR; TetR family transcriptional regulator complement(2680213..2680794) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404494 YP_003167557.1 CDS CAP2UW1_2338 NC_013194.1 2681012 2681761 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: dar:Daro_1211 electron transfer flavoprotein beta-subunit; Electron transfer flavoprotein alpha/beta-subunit 2681012..2681761 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404495 YP_003167558.1 CDS CAP2UW1_2339 NC_013194.1 2681764 2682696 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: dar:Daro_1212 electron transfer flavoprotein beta-subunit:electron transfer flavoprotein, alpha subunit; Electron transfer flavoprotein subunit alpha 2681764..2682696 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404496 YP_003167559.1 CDS CAP2UW1_2340 NC_013194.1 2682719 2683384 D KEGG: dar:Daro_1213 probable integral membrane protein; putative integral membrane protein 2682719..2683384 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404497 YP_003167560.1 CDS CAP2UW1_2341 NC_013194.1 2683428 2684813 D KEGG: azo:azo3335 putative type 4 pilus biogenesis; putative type 4 pilus biogenesis 2683428..2684813 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404498 YP_003167561.1 CDS CAP2UW1_2342 NC_013194.1 2684843 2686636 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: azo:azo1702 probable acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2684843..2686636 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404499 YP_003167562.1 CDS CAP2UW1_2343 NC_013194.1 2686755 2687159 D PFAM: thioesterase superfamily protein; KEGG: dar:Daro_1937 thioesterase superfamily; thioesterase superfamily protein 2686755..2687159 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404500 YP_003167563.1 CDS CAP2UW1_2344 NC_013194.1 2687187 2689157 D AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 2687187..2689157 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404501 YP_003167564.1 CDS CAP2UW1_2345 NC_013194.1 2689165 2690829 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(2689165..2690829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404502 YP_003167565.1 CDS CAP2UW1_2346 NC_013194.1 2691215 2691913 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bmu:Bmul_1879 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 2691215..2691913 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404503 YP_003167566.1 CDS CAP2UW1_2347 NC_013194.1 2691910 2693559 D PFAM: Peptidoglycan-binding LysM; KEGG: neu:NE2076 LysM motif; peptidoglycan-binding LysM 2691910..2693559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404504 YP_003167567.1 CDS CAP2UW1_2348 NC_013194.1 2693596 2695578 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; CHASE2 domain protein; KEGG: hch:HCH_05010 signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2693596..2695578 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404505 YP_003167568.1 CDS CAP2UW1_2349 NC_013194.1 2695811 2696776 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pap:PSPA7_4669 hypothetical protein; hypothetical protein 2695811..2696776 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404506 YP_003167569.1 CDS CAP2UW1_2350 NC_013194.1 2696959 2698380 D KEGG: noc:Noc_2286 hypothetical protein; hypothetical protein 2696959..2698380 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404507 YP_003167570.1 CDS CAP2UW1_2351 NC_013194.1 2698393 2699442 D KEGG: cya:CYA_0261 hypothetical protein; hypothetical protein 2698393..2699442 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404508 YP_003167571.1 CDS CAP2UW1_2352 NC_013194.1 2699490 2700440 D KEGG: gur:Gura_1475 regulator of chromosome condensation, RCC1; Alpha-tubulin suppressor and related RCC1 domain-containing protein-like protein 2699490..2700440 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404509 YP_003167572.1 CDS CAP2UW1_2353 NC_013194.1 2700463 2702001 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_3868 diguanylate cyclase; diguanylate cyclase complement(2700463..2702001) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404510 YP_003167573.1 CDS CAP2UW1_2354 NC_013194.1 2702353 2703336 D PFAM: dihydrouridine synthase DuS; KEGG: azo:azo1522 hypothetical protein; dihydrouridine synthase DuS 2702353..2703336 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404511 YP_003167574.1 CDS CAP2UW1_2355 NC_013194.1 2703329 2704018 D PFAM: putative methyltransferase; KEGG: azo:azo1523 tRNA (guanine-N7-)-methyltransferase; putative methyltransferase 2703329..2704018 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404512 YP_003167575.1 CDS CAP2UW1_2356 NC_013194.1 2704298 2706904 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2704298..2706904 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404513 YP_003167576.1 CDS CAP2UW1_2357 NC_013194.1 2707081 2708739 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 2707081..2708739 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404514 YP_003167577.1 CDS CAP2UW1_2358 NC_013194.1 2708775 2709824 D PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: mrd:Mrad2831_5886 platelet-activating factor acetylhydrolase plasma/intracellular isoform II; Platelet-activating factor acetylhydrolase plasma/intracellular isoform II 2708775..2709824 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404515 YP_003167578.1 CDS CAP2UW1_2359 NC_013194.1 2709844 2710014 R KEGG: dar:Daro_1930 hypothetical protein; hypothetical protein complement(2709844..2710014) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404516 YP_003167579.1 CDS CAP2UW1_2360 NC_013194.1 2710380 2710907 D PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_2710 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2710380..2710907 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404517 YP_003167580.1 CDS CAP2UW1_2361 NC_013194.1 2710994 2712448 R TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: hau:Haur_2625 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphogluconate dehydrogenase complement(2710994..2712448) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404518 YP_003167581.1 CDS CAP2UW1_2362 NC_013194.1 2712515 2713594 R KEGG: gfo:GFO_2580 conserved hypothetical protein, membrane; hypothetical protein complement(2712515..2713594) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404519 YP_003167582.1 CDS CAP2UW1_2363 NC_013194.1 2713659 2714375 R KEGG: amr:AM1_2247 hypothetical protein; anti-ECFsigma factor ChrR complement(2713659..2714375) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404520 YP_003167583.1 CDS CAP2UW1_2364 NC_013194.1 2714463 2714606 R hypothetical protein complement(2714463..2714606) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404521 YP_003167584.1 CDS CAP2UW1_2365 NC_013194.1 2715103 2715516 R PFAM: PilT protein domain protein; KEGG: dac:Daci_3962 PilT protein domain protein; PilT protein domain-containing protein complement(2715103..2715516) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404522 YP_003167585.1 CDS CAP2UW1_2366 NC_013194.1 2715521 2715778 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: neu:NE2111 hypothetical protein; prevent-host-death family protein complement(2715521..2715778) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404523 YP_003167586.1 CDS CAP2UW1_2368 NC_013194.1 2717008 2717850 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dar:Daro_3617 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 2717008..2717850 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404525 YP_003167587.1 CDS CAP2UW1_2369 NC_013194.1 2717863 2723808 D KEGG: eba:ebA5037 hypothetical protein; hypothetical protein 2717863..2723808 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404526 YP_003167588.1 CDS CAP2UW1_2370 NC_013194.1 2723805 2725775 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: lch:Lcho_3187 tetratricopeptide TPR_2 repeat protein; hypothetical protein 2723805..2725775 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404527 YP_003167589.1 CDS CAP2UW1_2371 NC_013194.1 2725816 2726508 R PFAM: pseudouridine synthase; KEGG: dar:Daro_4154 ribosomal large subunit pseudouridine synthase A; pseudouridine synthase complement(2725816..2726508) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404528 YP_003167590.1 CDS CAP2UW1_2372 NC_013194.1 2726861 2727415 D KEGG: hch:HCH_04153 permease of the major facilitator superfamily; hypothetical protein 2726861..2727415 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404529 YP_003167591.1 CDS CAP2UW1_2373 NC_013194.1 2728021 2728848 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2728021..2728848 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404530 YP_003167592.1 CDS CAP2UW1_2374 NC_013194.1 2728867 2729805 D PFAM: Auxin Efflux Carrier; KEGG: eca:ECA4317 putative transporter; auxin efflux carrier 2728867..2729805 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404531 YP_003167593.1 CDS folE NC_013194.1 2729912 2730592 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2729912..2730592) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404532 YP_003167594.1 CDS CAP2UW1_2376 NC_013194.1 2730792 2732039 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: azo:azo0323 2-nitropropane dioxygenase; 2-nitropropane dioxygenase NPD 2730792..2732039 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404533 YP_003167595.1 CDS CAP2UW1_2377 NC_013194.1 2732087 2732932 D PFAM: protein of unknown function DUF519; KEGG: dar:Daro_2736 protein of unknown function DUF519; hypothetical protein 2732087..2732932 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404534 YP_003167596.1 CDS CAP2UW1_2378 NC_013194.1 2732984 2733373 R KEGG: dar:Daro_2737 hypothetical protein; hypothetical protein complement(2732984..2733373) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404535 YP_003167597.1 CDS CAP2UW1_2379 NC_013194.1 2733378 2734361 R PFAM: HpcH/HpaI aldolase; KEGG: dar:Daro_2868 malyl-CoA lyase or citrate lyase, beta subunit; HpcH/HpaI aldolase complement(2733378..2734361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404536 YP_003167598.1 CDS CAP2UW1_2380 NC_013194.1 2734480 2735466 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(2734480..2735466) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404537 YP_003167599.1 CDS CAP2UW1_2381 NC_013194.1 2735683 2736420 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: azo:azo1548 putative GntR-family transcriptional regulator; GntR family transcriptional regulator 2735683..2736420 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404538 YP_003167600.1 CDS CAP2UW1_2382 NC_013194.1 2736540 2736932 D TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: azo:azo1549 succinate dehydrogenase; succinate dehydrogenase, cytochrome b556 subunit 2736540..2736932 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404539 YP_003167601.1 CDS CAP2UW1_2383 NC_013194.1 2736926 2737273 D TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: dar:Daro_2864 succinate dehydrogenase subunit D; succinate dehydrogenase, hydrophobic membrane anchor protein 2736926..2737273 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404540 YP_003167602.1 CDS CAP2UW1_2384 NC_013194.1 2737274 2739058 D KEGG: dar:Daro_2863 succinate dehydrogenase subunit A; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase, flavoprotein subunit 2737274..2739058 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404541 YP_003167603.1 CDS sdhB NC_013194.1 2739083 2739796 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2739083..2739796 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404542 YP_003167604.1 CDS CAP2UW1_2386 NC_013194.1 2739796 2740050 D PFAM: protein of unknown function DUF339; KEGG: dar:Daro_2861 protein of unknown function DUF339; hypothetical protein 2739796..2740050 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404543 YP_003167605.1 CDS CAP2UW1_2387 NC_013194.1 2740120 2741412 D KEGG: eba:ebA6687 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 2740120..2741412 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404544 YP_003167606.1 CDS sucA NC_013194.1 2741525 2744365 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2741525..2744365 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404545 YP_003167607.1 CDS CAP2UW1_2389 NC_013194.1 2744378 2745640 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 2744378..2745640 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404546 YP_003167608.1 CDS CAP2UW1_2390 NC_013194.1 2745732 2747168 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2745732..2747168 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404547 YP_003167609.1 CDS CAP2UW1_2391 NC_013194.1 2747475 2748149 D KEGG: dsh:Dshi_2359 hypothetical protein; hypothetical protein 2747475..2748149 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404548 YP_003167610.1 CDS CAP2UW1_2392 NC_013194.1 2748216 2748848 R PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0841 beta-lactamase-like; beta-lactamase domain-containing protein complement(2748216..2748848) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404549 YP_003167611.1 CDS CAP2UW1_2393 NC_013194.1 2749098 2749217 R hypothetical protein complement(2749098..2749217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404550 YP_003167612.1 CDS CAP2UW1_2394 NC_013194.1 2749228 2749473 R KEGG: nmu:Nmul_A0197 hypothetical protein; hypothetical protein complement(2749228..2749473) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404551 YP_003167613.1 CDS CAP2UW1_2395 NC_013194.1 2749591 2750181 D PFAM: regulatory protein MarR; regulatory protein Crp; KEGG: saz:Sama_2690 transcriptional regulator, MarR family; MarR family transcriptional regulator 2749591..2750181 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404552 YP_003167614.1 CDS CAP2UW1_2396 NC_013194.1 2750187 2750828 D PFAM: cyclase/dehydrase; KEGG: har:HEAR2693 conserved hypothetical protein; putative signal peptide; cyclase/dehydrase 2750187..2750828 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404553 YP_003167615.1 CDS CAP2UW1_2397 NC_013194.1 2750825 2752282 D KEGG: pla:Plav_0433 hypothetical protein; hypothetical protein 2750825..2752282 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404554 YP_003167616.1 CDS CAP2UW1_2398 NC_013194.1 2752317 2753201 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc0469 hypothetical protein; Endonuclease/exonuclease/phosphatase 2752317..2753201 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404555 YP_003167617.1 CDS CAP2UW1_2399 NC_013194.1 2753477 2754877 D KEGG: dar:Daro_1906 patatin; hypothetical protein 2753477..2754877 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404556 YP_003167618.1 CDS CAP2UW1_2400 NC_013194.1 2755139 2756032 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: gsu:GSU2677 hypothetical protein; hypothetical protein 2755139..2756032 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404557 YP_003167619.1 CDS CAP2UW1_2401 NC_013194.1 2756013 2756846 R PFAM: alpha/beta hydrolase fold; KEGG: eba:ebA4860 putative hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold protein complement(2756013..2756846) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404558 YP_003167620.1 CDS CAP2UW1_2402 NC_013194.1 2756887 2757096 R PFAM: protein of unknown function DUF465; KEGG: dar:Daro_1124 protein of unknown function DUF465; hypothetical protein complement(2756887..2757096) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404559 YP_003167621.1 CDS CAP2UW1_2403 NC_013194.1 2757128 2757475 R PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport; branched-chain amino acid transport complement(2757128..2757475) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404560 YP_003167622.1 CDS CAP2UW1_2404 NC_013194.1 2757472 2758170 R PFAM: AzlC family protein; KEGG: hau:Haur_0092 AzlC family protein; AzlC family protein complement(2757472..2758170) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404561 YP_003167623.1 CDS CAP2UW1_2405 NC_013194.1 2758237 2758557 D KEGG: dar:Daro_1125 hypothetical protein; hypothetical protein 2758237..2758557 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404562 YP_003167624.1 CDS greB NC_013194.1 2758698 2759264 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2758698..2759264 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404563 YP_003167625.1 CDS CAP2UW1_2407 NC_013194.1 2759379 2761298 D molecular chaperone; heat shock protein 90 2759379..2761298 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404564 YP_003167626.1 CDS CAP2UW1_2408 NC_013194.1 2761298 2761804 D KEGG: bxe:Bxe_A3324 hypothetical protein; hypothetical protein 2761298..2761804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404565 YP_003167627.1 CDS CAP2UW1_2409 NC_013194.1 2761870 2762388 R KEGG: dar:Daro_1150 hypothetical protein; hypothetical protein complement(2761870..2762388) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404566 YP_003167628.1 CDS CAP2UW1_2410 NC_013194.1 2762546 2764339 D PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1151 type II secretion system protein E:general secretory system II, protein E, N-terminal; type II secretion system protein E 2762546..2764339 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404567 YP_003167629.1 CDS CAP2UW1_2411 NC_013194.1 2764472 2766670 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: pol:Bpro_0678 catalase/peroxidase HPI; catalase/peroxidase HPI complement(2764472..2766670) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404568 YP_003167630.1 CDS CAP2UW1_2412 NC_013194.1 2767163 2767330 R hypothetical protein complement(2767163..2767330) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404569 YP_003167631.1 CDS CAP2UW1_2413 NC_013194.1 2767513 2769387 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: eba:ebA2722 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit; exodeoxyribonuclease V subunit alpha complement(2767513..2769387) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404570 YP_003167632.1 CDS CAP2UW1_2414 NC_013194.1 2769384 2773103 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: eba:ebA2723 ATP-dependent exoDNAse beta subunit; exodeoxyribonuclease V subunit beta complement(2769384..2773103) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404571 YP_003167633.1 CDS CAP2UW1_2415 NC_013194.1 2773100 2776441 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: eba:ebA2724 exodeoxyribonuclease V, gamma subunit; exodeoxyribonuclease V subunit gamma complement(2773100..2776441) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404572 YP_003167634.1 CDS CAP2UW1_2416 NC_013194.1 2776817 2777545 R KEGG: xac:XAC3351 hypothetical protein; hypothetical protein complement(2776817..2777545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404573 YP_003167635.1 CDS CAP2UW1_2417 NC_013194.1 2777943 2778596 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: azo:azo3545 leucine export protein LeuE; lysine exporter protein LysE/YggA 2777943..2778596 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404574 YP_003167636.1 CDS CAP2UW1_2418 NC_013194.1 2778613 2779923 D PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: dac:Daci_4264 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2778613..2779923 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404575 YP_003167637.1 CDS CAP2UW1_2419 NC_013194.1 2780257 2780847 R KEGG: bca:BCE_A0238 conserved hypothetical protein TIGR00052; hypothetical protein complement(2780257..2780847) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404576 YP_003167638.1 CDS CAP2UW1_2420 NC_013194.1 2780908 2782182 R PFAM: Methyltransferase type 11; SMART: TIR protein; KEGG: npu:Npun_R0857 GUN4 domain protein; type 11 methyltransferase complement(2780908..2782182) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404577 YP_003167639.1 CDS CAP2UW1_2421 NC_013194.1 2782500 2783747 D hypothetical protein 2782500..2783747 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404578 YP_003167640.1 CDS CAP2UW1_2422 NC_013194.1 2783972 2784574 D KEGG: rfr:Rfer_0080 collagen triple helix protein; hypothetical protein 2783972..2784574 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404579 YP_003167641.1 CDS CAP2UW1_2423 NC_013194.1 2784571 2784894 D KEGG: dar:Daro_2084 hypothetical protein; hypothetical protein 2784571..2784894 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404580 YP_003167642.1 CDS CAP2UW1_2424 NC_013194.1 2785106 2786830 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0045 ABC transporter related; ABC transporter 2785106..2786830 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404581 YP_003167643.1 CDS CAP2UW1_2425 NC_013194.1 2787255 2788175 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eba:ebA1369 putative transcription regulator protein, LysR family; LysR family transcriptional regulator complement(2787255..2788175) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404582 YP_003167644.1 CDS CAP2UW1_2426 NC_013194.1 2788299 2789519 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3581 major facilitator superfamily MFS_1; major facilitator superfamily protein 2788299..2789519 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404583 YP_003167645.1 CDS CAP2UW1_2427 NC_013194.1 2789566 2790006 D PFAM: thioesterase superfamily protein; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family; thioesterase superfamily protein 2789566..2790006 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404584 YP_003167646.1 CDS CAP2UW1_2428 NC_013194.1 2790215 2791399 R PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: rpd:RPD_1049 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase complement(2790215..2791399) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404585 YP_003167647.1 CDS CAP2UW1_2429 NC_013194.1 2791396 2791689 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rpe:RPE_1227 antibiotic biosynthesis monooxygenase; Antibiotic biosynthesis monooxygenase complement(2791396..2791689) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404586 YP_003167648.1 CDS CAP2UW1_2430 NC_013194.1 2791826 2792713 R PFAM: NHL repeat containing protein; KEGG: rrs:RoseRS_0355 NHL repeat containing protein; NHL repeat containing protein complement(2791826..2792713) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404587 YP_003167649.1 CDS CAP2UW1_2431 NC_013194.1 2792855 2793628 R KEGG: mca:MCA0717 lipoprotein, putative; lipoprotein complement(2792855..2793628) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404588 YP_003167650.1 CDS CAP2UW1_2432 NC_013194.1 2793654 2794613 R PFAM: beta-lactamase; KEGG: afw:Anae109_3459 beta-lactamase; beta-lactamase complement(2793654..2794613) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404589 YP_003167651.1 CDS CAP2UW1_2433 NC_013194.1 2794617 2795390 R KEGG: abu:Abu_1615 hypothetical protein; hypothetical protein complement(2794617..2795390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404590 YP_003167652.1 CDS CAP2UW1_2434 NC_013194.1 2795947 2797545 R KEGG: rrs:RoseRS_3946 hypothetical protein; hypothetical protein complement(2795947..2797545) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404591 YP_003167653.1 CDS CAP2UW1_2435 NC_013194.1 2797535 2800102 R PFAM: Cold-shock protein DNA-binding; KEGG: hch:HCH_06546 hypothetical protein; cold-shock DNA-binding domain-containing protein complement(2797535..2800102) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404592 YP_003167654.1 CDS CAP2UW1_2436 NC_013194.1 2800715 2801113 R KEGG: mmw:Mmwyl1_0339 membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) complement(2800715..2801113) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404593 YP_003167655.1 CDS CAP2UW1_2437 NC_013194.1 2801137 2801316 R hypothetical protein complement(2801137..2801316) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404594 YP_003167656.1 CDS CAP2UW1_2438 NC_013194.1 2801524 2803698 R KEGG: mab:MAB_2859c transglutaminase family protein; transglutaminase family protein complement(2801524..2803698) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404595 YP_003167657.1 CDS CAP2UW1_2439 NC_013194.1 2804055 2804864 D PFAM: protein of unknown function DUF1194; KEGG: ava:Ava_2299 protein of unknown function DUF1194; hypothetical protein 2804055..2804864 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404596 YP_003167658.1 CDS CAP2UW1_2440 NC_013194.1 2804997 2805710 R PFAM: regulatory protein TetR; KEGG: maq:Maqu_3068 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2804997..2805710) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404597 YP_003167659.1 CDS CAP2UW1_2441 NC_013194.1 2805926 2807749 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: aby:ABAYE0375 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2805926..2807749 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404598 YP_003167660.1 CDS CAP2UW1_2442 NC_013194.1 2807765 2810428 D PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1205 CoA-binding; GCN5-like N-acetyltransferase 2807765..2810428 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404599 YP_003167661.1 CDS CAP2UW1_2443 NC_013194.1 2810445 2810861 R KEGG: maq:Maqu_2380 hypothetical protein; hypothetical protein complement(2810445..2810861) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404600 YP_003167662.1 CDS CAP2UW1_2444 NC_013194.1 2811210 2812202 D KEGG: mgm:Mmc1_1045 putative transposase; putative transposase 2811210..2812202 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404601 YP_003167663.1 CDS CAP2UW1_2445 NC_013194.1 2812846 2814762 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0838 ABC transporter related; ABC transporter 2812846..2814762 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404603 YP_003167664.1 CDS CAP2UW1_2446 NC_013194.1 2814851 2816026 R TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcv:XCV4391 benzoate permease; benzoate transporter complement(2814851..2816026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404604 YP_003167665.1 CDS CAP2UW1_2447 NC_013194.1 2816092 2816958 R PFAM: Patatin; KEGG: rfr:Rfer_0361 patatin; Patatin complement(2816092..2816958) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404605 YP_003167666.1 CDS CAP2UW1_2448 NC_013194.1 2817734 2819014 D KEGG: mar:MAE_14250 hypothetical protein; hypothetical protein 2817734..2819014 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404606 YP_003167667.1 CDS CAP2UW1_2449 NC_013194.1 2819193 2820575 D PFAM: protein of unknown function DUF88; KEGG: eba:ebA2897 hypothetical protein; hypothetical protein 2819193..2820575 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404607 YP_003167668.1 CDS CAP2UW1_2450 NC_013194.1 2820679 2821062 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2820679..2821062) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404608 YP_003167669.1 CDS panC NC_013194.1 2821120 2821965 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(2821120..2821965) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404609 YP_003167670.1 CDS CAP2UW1_2452 NC_013194.1 2821976 2822788 R KEGG: azo:azo3144 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2821976..2822788) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404610 YP_003167671.1 CDS CAP2UW1_2453 NC_013194.1 2822822 2824048 R PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2497 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2822822..2824048) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404611 YP_003167672.1 CDS CAP2UW1_2454 NC_013194.1 2824270 2824500 D KEGG: dac:Daci_2490 hypothetical protein; hypothetical protein 2824270..2824500 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404612 YP_003167673.1 CDS CAP2UW1_2455 NC_013194.1 2824494 2825018 R KEGG: dar:Daro_3183 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2824494..2825018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404613 YP_003167674.1 CDS CAP2UW1_2456 NC_013194.1 2825118 2826464 R KEGG: dar:Daro_3182 poly(A) polymerase, PcnB; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase complement(2825118..2826464) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404614 YP_003167675.1 CDS CAP2UW1_2457 NC_013194.1 2826553 2827218 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: azo:azo3139 haloacid dehalogenase-like hydrolase family protein; HAD-superfamily hydrolase complement(2826553..2827218) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404615 YP_003167676.1 CDS CAP2UW1_2458 NC_013194.1 2827240 2827896 R TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: dar:Daro_3180 hypothetical protein; DnaA regulatory inactivator Hda complement(2827240..2827896) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404616 YP_003167677.1 CDS CAP2UW1_2459 NC_013194.1 2828043 2829080 D KEGG: dar:Daro_3174 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 2828043..2829080 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404617 YP_003167678.1 CDS CAP2UW1_2460 NC_013194.1 2829165 2829500 R KEGG: kra:Krad_3236 hypothetical protein; hypothetical protein complement(2829165..2829500) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404618 YP_003167679.1 CDS CAP2UW1_2461 NC_013194.1 2829846 2831066 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: azo:azo3135 membrane fusion protein; RND family efflux transporter MFP subunit 2829846..2831066 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404619 YP_003167680.1 CDS CAP2UW1_2462 NC_013194.1 2831063 2834143 D PFAM: acriflavin resistance protein; KEGG: azo:azo3134 RND efflux transporter, permease protein; acriflavin resistance protein 2831063..2834143 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404620 YP_003167681.1 CDS CAP2UW1_2464 NC_013194.1 2834826 2834924 D hypothetical protein 2834826..2834924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404622 YP_003167682.1 CDS CAP2UW1_2465 NC_013194.1 2835222 2836109 D PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_1677 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2835222..2836109 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404623 YP_003167683.1 CDS CAP2UW1_2466 NC_013194.1 2836158 2837612 D KEGG: tbd:Tbd_0827 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 2836158..2837612 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404624 YP_003167684.1 CDS CAP2UW1_2467 NC_013194.1 2837585 2838247 R KEGG: dar:Daro_2193 ankyrin; ankyrin complement(2837585..2838247) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404625 YP_003167685.1 CDS CAP2UW1_2468 NC_013194.1 2838244 2839026 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: dar:Daro_2194 TatD-related deoxyribonuclease; TatD family hydrolase complement(2838244..2839026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404626 YP_003167686.1 CDS CAP2UW1_2469 NC_013194.1 2839037 2839417 R PFAM: type IV pilus assembly PilZ; KEGG: dar:Daro_2195 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(2839037..2839417) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404627 YP_003167687.1 CDS CAP2UW1_2470 NC_013194.1 2839424 2840470 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: dar:Daro_2196 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' complement(2839424..2840470) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404628 YP_003167688.1 CDS tmk NC_013194.1 2840467 2841102 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(2840467..2841102) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404629 YP_003167689.1 CDS CAP2UW1_2472 NC_013194.1 2841099 2842100 R PFAM: aminodeoxychorismate lyase; KEGG: dar:Daro_2198 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(2841099..2842100) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404630 YP_003167690.1 CDS CAP2UW1_2473 NC_013194.1 2842302 2843318 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: dar:Daro_2199 glycine cleavage T protein (aminomethyl transferase); folate-binding protein YgfZ 2842302..2843318 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404631 YP_003167691.1 CDS CAP2UW1_2474 NC_013194.1 2843341 2844123 D PFAM: protein of unknown function DUF833; KEGG: dar:Daro_2200 protein of unknown function DUF833; hypothetical protein 2843341..2844123 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404632 YP_003167692.1 CDS CAP2UW1_2475 NC_013194.1 2844093 2844581 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: dar:Daro_2201 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein complement(2844093..2844581) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404633 YP_003167693.1 CDS CAP2UW1_2476 NC_013194.1 2844578 2845039 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: dar:Daro_2202 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase complement(2844578..2845039) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404634 YP_003167694.1 CDS CAP2UW1_2477 NC_013194.1 2845199 2845714 D PFAM: cyclic nucleotide-binding; KEGG: scl:sce8187 cAMP-dependent protein kinase regulatory subunit; cyclic nucleotide-binding protein 2845199..2845714 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404635 YP_003167695.1 CDS CAP2UW1_2478 NC_013194.1 2845739 2846110 R KEGG: tcx:Tcr_0553 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; hypothetical protein complement(2845739..2846110) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404636 YP_003167696.1 CDS CAP2UW1_2479 NC_013194.1 2846339 2847121 D PFAM: 2-phosphosulfolactate phosphatase; KEGG: dar:Daro_4162 2-phosphosulfolactate phosphatase; 2-phosphosulfolactate phosphatase 2846339..2847121 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404637 YP_003167697.1 CDS CAP2UW1_2480 NC_013194.1 2847226 2848632 R KEGG: pap:PSPA7_5846 hypothetical protein; hypothetical protein complement(2847226..2848632) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404638 YP_003167698.1 CDS CAP2UW1_2481 NC_013194.1 2848623 2851430 R KEGG: rso:RSc0786 hypothetical protein; hypothetical protein complement(2848623..2851430) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404639 YP_003167699.1 CDS CAP2UW1_2482 NC_013194.1 2851915 2855187 R KEGG: sco:SCO1292 secreted protein; hypothetical protein complement(2851915..2855187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404640 YP_003167700.1 CDS CAP2UW1_2483 NC_013194.1 2855192 2856586 R PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein; zinc finger SWIM domain-containing protein complement(2855192..2856586) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404641 YP_003167701.1 CDS CAP2UW1_2484 NC_013194.1 2856607 2858961 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2; hypothetical protein complement(2856607..2858961) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404642 YP_003167702.1 CDS CAP2UW1_2485 NC_013194.1 2858958 2860775 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpc:Cpar_1378 TPR repeat-containing protein; hypothetical protein complement(2858958..2860775) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404643 YP_003167703.1 CDS CAP2UW1_2486 NC_013194.1 2861001 2862626 D KEGG: eba:ebA826 hypothetical protein; hypothetical protein 2861001..2862626 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404644 YP_003167704.1 CDS CAP2UW1_2487 NC_013194.1 2862646 2863035 R KEGG: dar:Daro_3271 hypothetical protein; hypothetical protein complement(2862646..2863035) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404645 YP_003167705.1 CDS CAP2UW1_2488 NC_013194.1 2863212 2863538 R KEGG: pna:Pnap_2879 cytochrome c, class I; cytochrome c, class I complement(2863212..2863538) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404646 YP_003167706.1 CDS CAP2UW1_2489 NC_013194.1 2863645 2865327 R PFAM: cytochrome d1 heme region; KEGG: mag:amb1395 nitrite reductase precursor; Hydroxylamine reductase complement(2863645..2865327) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404647 YP_003167707.1 CDS CAP2UW1_2490 NC_013194.1 2865537 2866322 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_3275 uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2865537..2866322 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404648 YP_003167708.1 CDS CAP2UW1_2491 NC_013194.1 2866329 2867270 R TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: dar:Daro_3664 1,4-dihydroxy-2-naphtoate prenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(2866329..2867270) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404649 YP_003167709.1 CDS CAP2UW1_2492 NC_013194.1 2867825 2868895 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mgm:Mmc1_0774 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2867825..2868895 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404651 YP_003167710.1 CDS queA NC_013194.1 2869702 2870733 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2869702..2870733 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404653 YP_003167711.1 CDS CAP2UW1_2495 NC_013194.1 2870767 2874969 D KEGG: lch:Lcho_2916 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase 2870767..2874969 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404654 YP_003167712.1 CDS CAP2UW1_2496 NC_013194.1 2875972 2877414 D KEGG: mxa:MXAN_6823 hypothetical protein; hypothetical protein 2875972..2877414 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404655 YP_003167713.1 CDS CAP2UW1_2497 NC_013194.1 2877447 2879123 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: lbl:LBL_0703 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 2877447..2879123 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404656 YP_003167714.1 CDS CAP2UW1_2498 NC_013194.1 2879168 2880355 D PFAM: MaoC domain protein dehydratase; KEGG: lic:LIC11359 MaoC; MaoC domain-containing protein dehydratase 2879168..2880355 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404657 YP_003167715.1 CDS CAP2UW1_2499 NC_013194.1 2880358 2882376 D KEGG: nca:Noca_1772 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit 2880358..2882376 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404658 YP_003167716.1 CDS CAP2UW1_2500 NC_013194.1 2882384 2883433 D PFAM: ArgK protein; SMART: AAA ATPase; KEGG: rru:Rru_A2944 ArgK protein; ArgK protein 2882384..2883433 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404659 YP_003167717.1 CDS CAP2UW1_2501 NC_013194.1 2883414 2885168 D TIGRFAM: crotonyl-CoA reductase; PFAM: CBS domain containing protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: lbl:LBL_0505 zinc-binding dehydrogenase; crotonyl-CoA reductase 2883414..2885168 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404660 YP_003167718.1 CDS CAP2UW1_2502 NC_013194.1 2885303 2886280 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rru:Rru_A3371 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase zinc-binding domain-containing protein 2885303..2886280 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404661 YP_003167719.1 CDS CAP2UW1_2503 NC_013194.1 2886575 2887024 D PFAM: MaoC domain protein dehydratase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bph:Bphy_6753 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 2886575..2887024 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404662 YP_003167720.1 CDS CAP2UW1_2504 NC_013194.1 2887120 2887974 R KEGG: rrs:RoseRS_4177 hypothetical protein; hypothetical protein complement(2887120..2887974) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404663 YP_003167721.1 CDS CAP2UW1_2505 NC_013194.1 2888316 2889563 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rrs:RoseRS_4176 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2888316..2889563 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404664 YP_003167722.1 CDS CAP2UW1_2506 NC_013194.1 2889587 2890813 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rca:Rcas_0910 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2889587..2890813 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404665 YP_003167723.1 CDS CAP2UW1_2507 NC_013194.1 2890838 2892058 D KEGG: rca:Rcas_0911 acyl-CoA transferase/carnitine dehydratase-like protein; acyl-CoA transferase/carnitine dehydratase-like protein 2890838..2892058 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404666 YP_003167724.1 CDS CAP2UW1_2508 NC_013194.1 2892127 2893182 D PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase; HpcH/HpaI aldolase 2892127..2893182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404667 YP_003167725.1 CDS CAP2UW1_2509 NC_013194.1 2893218 2894276 D PFAM: MaoC domain protein dehydratase; KEGG: cau:Caur_0173 MaoC domain protein dehydratase; MaoC domain-containing protein dehydratase 2893218..2894276 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404668 YP_003167726.1 CDS CAP2UW1_2510 NC_013194.1 2894463 2895059 D KEGG: rfr:Rfer_2187 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase subunit gamma 2894463..2895059 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404669 YP_003167727.1 CDS CAP2UW1_2511 NC_013194.1 2895052 2896305 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: lch:Lcho_2150 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2895052..2896305 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404670 YP_003167728.1 CDS CAP2UW1_2512 NC_013194.1 2896317 2897330 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: rfr:Rfer_2185 thiamine pyrophosphate enzyme-like TPP-binding; thiamine pyrophosphate TPP-binding domain-containing protein 2896317..2897330 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404671 YP_003167729.1 CDS CAP2UW1_2513 NC_013194.1 2897330 2898952 D unknown function; putative glutamate synthase (NADPH) small subunit 2897330..2898952 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404672 YP_003167730.1 CDS CAP2UW1_2514 NC_013194.1 2899117 2901846 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 2899117..2901846 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404673 YP_003167731.1 CDS CAP2UW1_2515 NC_013194.1 2902101 2903216 D KEGG: eba:ebA1415 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2902101..2903216 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404674 YP_003167732.1 CDS yajC NC_013194.1 2903265 2903591 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2903265..2903591 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404675 YP_003167733.1 CDS secD NC_013194.1 2903650 2905527 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 2903650..2905527 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404676 YP_003167734.1 CDS secF NC_013194.1 2905540 2906484 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 2905540..2906484 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404677 YP_003167735.1 CDS CAP2UW1_2519 NC_013194.1 2906601 2907302 D PFAM: cytochrome B561; KEGG: azo:azo0089 conserved hypothetical hydrogenase cytochrome b-type subunit; cytochrome B561 2906601..2907302 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404678 YP_003167736.1 CDS CAP2UW1_2520 NC_013194.1 2907360 2907815 R PFAM: cytochrome c prime; KEGG: azo:azo0090 probable cytochrome c'; cytochrome c prime complement(2907360..2907815) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404679 YP_003167737.1 CDS CAP2UW1_2521 NC_013194.1 2907975 2908307 R KEGG: dar:Daro_3286 hypothetical protein; hypothetical protein complement(2907975..2908307) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404680 YP_003167738.1 CDS CAP2UW1_2522 NC_013194.1 2908307 2908639 R KEGG: dar:Daro_3287 hypothetical protein; hypothetical protein complement(2908307..2908639) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404681 YP_003167739.1 CDS CAP2UW1_2523 NC_013194.1 2908639 2910006 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2908639..2910006) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404682 YP_003167740.1 CDS CAP2UW1_2524 NC_013194.1 2910136 2910744 D PFAM: Glutathione S-transferase domain; KEGG: dar:Daro_3289 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal; glutathione S-transferase domain-containing protein 2910136..2910744 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404683 YP_003167741.1 CDS motB NC_013194.1 2910791 2911750 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(2910791..2911750) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404684 YP_003167742.1 CDS CAP2UW1_2526 NC_013194.1 2911785 2912642 R KEGG: dar:Daro_0722 chemotaxis MotA protein; chemotaxis MotA protein complement(2911785..2912642) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404685 YP_003167743.1 CDS CAP2UW1_2527 NC_013194.1 2912843 2913382 D PFAM: NUDIX hydrolase; KEGG: eba:ebA4673 conserved hypothetical protein, related to NUDIX hydrolase; NUDIX hydrolase 2912843..2913382 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404686 YP_003167744.1 CDS CAP2UW1_2528 NC_013194.1 2913411 2914550 R KEGG: tvo:TVN1411 predicted inactivated transposase; hypothetical protein complement(2913411..2914550) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404687 YP_003167745.1 CDS CAP2UW1_2529 NC_013194.1 2914628 2915323 R TIGRFAM: TonB family protein; KEGG: dar:Daro_0720 TonB, C-terminal; TonB family protein complement(2914628..2915323) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404688 YP_003167746.1 CDS CAP2UW1_2530 NC_013194.1 2915465 2915605 R KEGG: reu:Reut_A2520 hypothetical protein; hypothetical protein complement(2915465..2915605) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404689 YP_003167747.1 CDS CAP2UW1_2531 NC_013194.1 2915626 2916162 R KEGG: dar:Daro_0718 hypothetical protein; hypothetical protein complement(2915626..2916162) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404690 YP_003167748.1 CDS CAP2UW1_2532 NC_013194.1 2916159 2917574 R TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: dar:Daro_0717 4Fe-4S ferredoxin, iron-sulfur binding; cytochrome c oxidase accessory protein CcoG complement(2916159..2917574) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404691 YP_003167749.1 CDS CAP2UW1_2533 NC_013194.1 2917804 2918703 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: dar:Daro_0716 cytochrome c oxidase cbb3-type, subunit III; cytochrome c oxidase, cbb3-type subunit III complement(2917804..2918703) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404692 YP_003167750.1 CDS CAP2UW1_2534 NC_013194.1 2918703 2918894 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component; Cbb3-type cytochrome oxidase component complement(2918703..2918894) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404693 YP_003167751.1 CDS CAP2UW1_2535 NC_013194.1 2918899 2919513 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: eba:ebA5132 cytochrome-cbb3 oxidase, subunit II; cytochrome c oxidase, cbb3-type subunit II complement(2918899..2919513) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404694 YP_003167752.1 CDS CAP2UW1_2536 NC_013194.1 2919524 2920951 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(2919524..2920951) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404695 YP_003167753.1 CDS CAP2UW1_2537 NC_013194.1 2921248 2921496 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: azo:azo1340 conserved hypothetical cytochrome oxidase maturation protein; cytochrome oxidase maturation protein, cbb3-type complement(2921248..2921496) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404696 YP_003167754.1 CDS CAP2UW1_2538 NC_013194.1 2921500 2923950 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_0711 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(2921500..2923950) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404697 YP_003167755.1 CDS CAP2UW1_2539 NC_013194.1 2924154 2925077 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: dar:Daro_3047 FMN adenylyltransferase / riboflavin kinase; riboflavin biosynthesis protein RibF 2924154..2925077 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404698 YP_003167756.1 CDS ileS NC_013194.1 2925086 2927914 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2925086..2927914 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404699 YP_003167757.1 CDS lspA NC_013194.1 2927901 2928413 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2927901..2928413 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404700 YP_003167758.1 CDS CAP2UW1_2542 NC_013194.1 2928460 2928915 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: dar:Daro_3044 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2928460..2928915 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404701 YP_003167759.1 CDS CAP2UW1_2543 NC_013194.1 2928926 2929849 D KEGG: azo:azo1202 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2928926..2929849 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404702 YP_003167760.1 CDS CAP2UW1_2544 NC_013194.1 2930003 2930341 D KEGG: dar:Daro_2846 hypothetical protein; hypothetical protein 2930003..2930341 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404703 YP_003167761.1 CDS CAP2UW1_2545 NC_013194.1 2930382 2932598 R PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_1996 radical SAM; Radical SAM domain-containing protein complement(2930382..2932598) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404704 YP_003167762.1 CDS CAP2UW1_2546 NC_013194.1 2932921 2933613 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rec:RHECIAT_PC0000641 probable transcriptional regulator protein, GntR family; GntR family transcriptional regulator 2932921..2933613 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404705 YP_003167763.1 CDS CAP2UW1_2547 NC_013194.1 2933610 2934707 D PFAM: Extracellular ligand-binding receptor; KEGG: rru:Rru_A1746 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 2933610..2934707 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404706 YP_003167764.1 CDS CAP2UW1_2548 NC_013194.1 2934840 2937983 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 2934840..2937983 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404707 YP_003167765.1 CDS CAP2UW1_2549 NC_013194.1 2938050 2939267 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2938050..2939267 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404708 YP_003167766.1 CDS dut NC_013194.1 2939243 2939704 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 2939243..2939704 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404709 YP_003167767.1 CDS CAP2UW1_2551 NC_013194.1 2939766 2940269 R PFAM: Disulphide bond formation protein DsbB; KEGG: dar:Daro_3145 disulphide bond formation protein DsbB; Disulfide bond formation protein DsbB complement(2939766..2940269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404710 YP_003167768.1 CDS CAP2UW1_2552 NC_013194.1 2940282 2941445 R PFAM: fatty acid desaturase; KEGG: bte:BTH_I0775 fatty acid desaturase family protein; fatty acid desaturase complement(2940282..2941445) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404711 YP_003167769.1 CDS CAP2UW1_2553 NC_013194.1 2941971 2942885 D PFAM: inner-membrane translocator; KEGG: rru:Rru_A1751 inner-membrane translocator; inner-membrane translocator 2941971..2942885 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404712 YP_003167770.1 CDS CAP2UW1_2554 NC_013194.1 2942885 2944186 D PFAM: inner-membrane translocator; KEGG: rru:Rru_A1750 inner-membrane translocator; inner-membrane translocator 2942885..2944186 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404713 YP_003167771.1 CDS CAP2UW1_2555 NC_013194.1 2944183 2945049 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1749 ABC transporter component; ABC transporter 2944183..2945049 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404714 YP_003167772.1 CDS CAP2UW1_2556 NC_013194.1 2945046 2945786 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mrd:Mrad2831_2252 ABC transporter related; ABC transporter 2945046..2945786 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404715 YP_003167773.1 CDS CAP2UW1_2557 NC_013194.1 2945806 2946702 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: rrs:RoseRS_2519 protein of unknown function DUF6, transmembrane; hypothetical protein 2945806..2946702 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404716 YP_003167774.1 CDS CAP2UW1_2558 NC_013194.1 2946730 2949750 R KEGG: rfr:Rfer_3250 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(2946730..2949750) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404717 YP_003167775.1 CDS CAP2UW1_2559 NC_013194.1 2949765 2951084 R KEGG: rfr:Rfer_2637 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase complement(2949765..2951084) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404718 YP_003167776.1 CDS CAP2UW1_2560 NC_013194.1 2951184 2951633 R PFAM: response regulator receiver; KEGG: mag:amb2979 FOG: CheY-like receiver; response regulator receiver protein complement(2951184..2951633) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404719 YP_003167777.1 CDS CAP2UW1_2561 NC_013194.1 2951644 2952090 R PFAM: response regulator receiver; KEGG: rba:RB11201 response regulator rcp1; response regulator receiver protein complement(2951644..2952090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404720 YP_003167778.1 CDS CAP2UW1_2562 NC_013194.1 2952087 2953727 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_2762 histidine kinase; integral membrane sensor signal transduction histidine kinase complement(2952087..2953727) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404721 YP_003167779.1 CDS CAP2UW1_2563 NC_013194.1 2953724 2955361 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: mag:amb1126 nodulation protein V; multi-sensor signal transduction histidine kinase complement(2953724..2955361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404722 YP_003167780.1 CDS CAP2UW1_2564 NC_013194.1 2956019 2957134 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 2956019..2957134 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404723 YP_003167781.1 CDS CAP2UW1_2565 NC_013194.1 2957185 2958357 D PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: cja:CJA_1072 D-isomer specific 2-hydroxyacid dehydrogenase; d-isomer specific 2-hydroxyacid dehydrogenase 2957185..2958357 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404724 YP_003167782.1 CDS CAP2UW1_2566 NC_013194.1 2958524 2958682 D hypothetical protein 2958524..2958682 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404725 YP_003167783.1 CDS CAP2UW1_2567 NC_013194.1 2958795 2959775 R PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: mgm:Mmc1_1547 putative phosphohistidine phosphatase, SixA; putative phosphohistidine phosphatase SixA complement(2958795..2959775) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404726 YP_003167784.1 CDS CAP2UW1_2568 NC_013194.1 2959901 2962450 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1989 protein of unknown function DUF214; hypothetical protein complement(2959901..2962450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404727 YP_003167785.1 CDS CAP2UW1_2569 NC_013194.1 2962536 2963279 D PFAM: extracellular solute-binding protein family 3; KEGG: dar:Daro_0469 extracellular solute-binding protein, family 3; family 3 extracellular solute-binding protein 2962536..2963279 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404728 YP_003167786.1 CDS CAP2UW1_2570 NC_013194.1 2963429 2964772 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_0470 GGDEF; diguanylate cyclase 2963429..2964772 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404729 YP_003167787.1 CDS CAP2UW1_2571 NC_013194.1 2964769 2966502 R PFAM: TrkA-N domain protein; KEGG: dar:Daro_0498 TrkA-N; TrkA-N domain-containing protein complement(2964769..2966502) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404730 YP_003167788.1 CDS CAP2UW1_2572 NC_013194.1 2966516 2966962 R KEGG: azo:azo1530 hypothetical protein; hypothetical protein complement(2966516..2966962) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404731 YP_003167789.1 CDS CAP2UW1_2573 NC_013194.1 2967105 2967698 D PFAM: Appr-1-p processing domain protein; KEGG: eba:ebA148 hypothetical protein; Appr-1-p processing domain-containing protein 2967105..2967698 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404732 YP_003167790.1 CDS CAP2UW1_2574 NC_013194.1 2967740 2968186 R PFAM: Rhodanese domain protein; KEGG: dar:Daro_1790 rhodanese-like; Rhodanese domain-containing protein complement(2967740..2968186) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404733 YP_003167791.1 CDS CAP2UW1_2575 NC_013194.1 2968255 2969463 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; heat shock protein DnaJ domain protein; KEGG: scl:sce1629 probable serine protease; heat shock protein DnaJ domain-containing protein 2968255..2969463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404734 YP_003167792.1 CDS CAP2UW1_2576 NC_013194.1 2969457 2969573 R hypothetical protein complement(2969457..2969573) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404735 YP_003167793.1 CDS CAP2UW1_2577 NC_013194.1 2969570 2969887 R hypothetical protein complement(2969570..2969887) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404736 YP_003167794.1 CDS CAP2UW1_2578 NC_013194.1 2969988 2970203 R PFAM: YcfA family protein; KEGG: syn:ssl1377 hypothetical protein; YcfA family protein complement(2969988..2970203) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404737 YP_003167795.1 CDS CAP2UW1_2579 NC_013194.1 2970196 2970402 R PFAM: protein of unknown function UPF0150; KEGG: neu:NE1268 hypothetical protein; hypothetical protein complement(2970196..2970402) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404738 YP_003167796.1 CDS CAP2UW1_2580 NC_013194.1 2970527 2971462 R KEGG: neu:NE0665 hypothetical protein; hypothetical protein complement(2970527..2971462) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404739 YP_003167797.1 CDS CAP2UW1_2582 NC_013194.1 2972871 2974715 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: rfr:Rfer_2800 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein 2972871..2974715 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404741 YP_003167798.1 CDS CAP2UW1_2583 NC_013194.1 2974727 2976565 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rfr:Rfer_2799 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2974727..2976565 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404742 YP_003167799.1 CDS CAP2UW1_2584 NC_013194.1 2976567 2977622 D catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2976567..2977622 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404743 YP_003167800.1 CDS CAP2UW1_2585 NC_013194.1 2977919 2978257 D KEGG: rrs:RoseRS_2454 hypothetical protein; hypothetical protein 2977919..2978257 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404744 YP_003167801.1 CDS psd NC_013194.1 2978391 2979248 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 2978391..2979248 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404745 YP_003167802.1 CDS CAP2UW1_2587 NC_013194.1 2979310 2981067 R KEGG: rfr:Rfer_0029 hypothetical protein; hypothetical protein complement(2979310..2981067) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404746 YP_003167803.1 CDS CAP2UW1_2588 NC_013194.1 2981248 2981433 R hypothetical protein complement(2981248..2981433) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404747 YP_003167804.1 CDS CAP2UW1_2589 NC_013194.1 2981473 2982042 R KEGG: rcm:A1E_03320 hypothetical protein; hypothetical protein complement(2981473..2982042) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404748 YP_003167805.1 CDS CAP2UW1_2590 NC_013194.1 2982039 2982518 R KEGG: pna:Pnap_1479 integral membrane protein-like protein; integral membrane protein complement(2982039..2982518) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404749 YP_003167806.1 CDS CAP2UW1_2591 NC_013194.1 2982518 2983381 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: eba:ebA6861 hypothetical protein; NAD-dependent epimerase/dehydratase complement(2982518..2983381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404750 YP_003167807.1 CDS CAP2UW1_2592 NC_013194.1 2983697 2984719 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: lbf:LBF_0732 transcriptional regulator; AraC family transcriptional regulator complement(2983697..2984719) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404751 YP_003167808.1 CDS CAP2UW1_2593 NC_013194.1 2985162 2986706 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ppd:Ppro_1221 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2985162..2986706 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404752 YP_003167809.1 CDS CAP2UW1_2594 NC_013194.1 2986851 2988011 R KEGG: dar:Daro_0150 hypothetical protein; hypothetical protein complement(2986851..2988011) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404753 YP_003167810.1 CDS CAP2UW1_2595 NC_013194.1 2988066 2989529 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: cpb:Cphamn1_0192 protein of unknown function DUF306 MetA and HslJ; hypothetical protein complement(2988066..2989529) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404754 YP_003167811.1 CDS CAP2UW1_2596 NC_013194.1 2989650 2990366 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3192 methyltransferase type 12; type 12 methyltransferase complement(2989650..2990366) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404755 YP_003167812.1 CDS CAP2UW1_2597 NC_013194.1 2990392 2990820 R KEGG: gur:Gura_3193 hypothetical protein; hypothetical protein complement(2990392..2990820) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404756 YP_003167813.1 CDS CAP2UW1_2598 NC_013194.1 2990813 2991397 R KEGG: gur:Gura_3194 hypothetical protein; hypothetical protein complement(2990813..2991397) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404757 YP_003167814.1 CDS CAP2UW1_2599 NC_013194.1 2991387 2991623 R KEGG: gur:Gura_3195 hypothetical protein; hypothetical protein complement(2991387..2991623) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404758 YP_003167815.1 CDS CAP2UW1_2600 NC_013194.1 2991623 2993293 R TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: gur:Gura_3196 FkbH like protein; FkbH-like protein complement(2991623..2993293) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404759 YP_003167816.1 CDS CAP2UW1_2601 NC_013194.1 2993439 2993675 R KEGG: noc:Noc_2637 UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase complement(2993439..2993675) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404760 YP_003167817.1 CDS CAP2UW1_2602 NC_013194.1 2993907 2997266 D KEGG: azo:azo2450 putative two-component system sensor protein; TIGRFAM: PAS sensor protein; hemerythrin-like metal-binding protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hemerythrin HHE cation binding domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2993907..2997266 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404761 YP_003167818.1 CDS CAP2UW1_2603 NC_013194.1 2997263 2999632 D KEGG: dar:Daro_2378 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 2997263..2999632 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404762 YP_003167819.1 CDS CAP2UW1_2604 NC_013194.1 2999681 3000745 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: azo:azo2449 putative two component response regulator; response regulator receiver modulated metal dependent phosphohydrolase 2999681..3000745 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404763 YP_003167820.1 CDS CAP2UW1_2605 NC_013194.1 3000764 3001555 D PFAM: extracellular solute-binding protein family 3; KEGG: azo:azo0499 putative cyclohexadienyl dehydratase; family 3 extracellular solute-binding protein 3000764..3001555 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404764 YP_003167821.1 CDS CAP2UW1_2606 NC_013194.1 3001591 3005007 D KEGG: azo:azo2450 putative two-component system sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 3001591..3005007 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404765 YP_003167822.1 CDS CAP2UW1_2607 NC_013194.1 3005415 3006719 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mgm:Mmc1_3301 hypothetical protein; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3005415..3006719 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404766 YP_003167823.1 CDS CAP2UW1_2608 NC_013194.1 3006756 3007421 D hypothetical protein 3006756..3007421 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404767 YP_003167824.1 CDS CAP2UW1_2609 NC_013194.1 3007443 3012656 D PFAM: pentapeptide repeat protein; WD-40 repeat protein; peptidase S9B dipeptidylpeptidase IV domain protein; SMART: Pyrrolo-quinoline quinone; KEGG: scl:sce8391 WD-repeat protein; WD-40 repeat-containing protein 3007443..3012656 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404768 YP_003167825.1 CDS CAP2UW1_2610 NC_013194.1 3012823 3013023 D KEGG: cak:Caul_0837 hypothetical protein; hypothetical protein 3012823..3013023 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404769 YP_003167826.1 CDS CAP2UW1_2611 NC_013194.1 3013060 3014025 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mca:MCA2293 precorrin-3B C17-methyltransferase/conserved domain protein; precorrin-3B C17-methyltransferase complement(3013060..3014025) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404770 YP_003167827.1 CDS CAP2UW1_2612 NC_013194.1 3014022 3014447 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dar:Daro_1686 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis CbiG protein complement(3014022..3014447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404771 YP_003167828.1 CDS CAP2UW1_2613 NC_013194.1 3014444 3015187 R PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: dar:Daro_1687 cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis CbiG protein complement(3014444..3015187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404772 YP_003167829.1 CDS CAP2UW1_2614 NC_013194.1 3015184 3015969 R TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dar:Daro_1688 precorrin-2 C20-methyltransferase / cobalt-factor II C20-methyltransferase; precorrin-2 C20-methyltransferase complement(3015184..3015969) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404773 YP_003167830.1 CDS CAP2UW1_2615 NC_013194.1 3016054 3017349 R KEGG: dar:Daro_1689 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Methyltransferase type 12; precorrin-6y C5,15-methyltransferase subunit CbiT complement(3016054..3017349) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404774 YP_003167831.1 CDS cbiD NC_013194.1 3017327 3018496 R Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase complement(3017327..3018496) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404775 YP_003167832.1 CDS CAP2UW1_2617 NC_013194.1 3018493 3019164 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: dar:Daro_1691 precorrin-8X methylmutase; precorrin-8X methylmutase CbiC/CobH complement(3018493..3019164) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404776 YP_003167833.1 CDS CAP2UW1_2618 NC_013194.1 3019171 3020097 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: azo:azo3530 conserved hypothetical protein CbiX; cobalamin (vitamin B12) biosynthesis CbiX protein complement(3019171..3020097) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404777 YP_003167834.1 CDS CAP2UW1_2619 NC_013194.1 3020155 3020937 R KEGG: mpt:Mpe_B0473 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase complement(3020155..3020937) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404778 YP_003167835.1 CDS CAP2UW1_2620 NC_013194.1 3020989 3022275 R PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mpt:Mpe_B0472 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; CobB/CobQ domain-containing protein glutamine amidotransferase complement(3020989..3022275) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404779 YP_003167836.1 CDS CAP2UW1_2621 NC_013194.1 3022290 3022904 R KEGG: neu:NE0634 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase complement(3022290..3022904) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404780 YP_003167837.1 CDS CAP2UW1_2622 NC_013194.1 3023500 3023997 D PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein; OsmC family protein 3023500..3023997 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404781 YP_003167838.1 CDS CAP2UW1_2623 NC_013194.1 3024033 3024512 R KEGG: dar:Daro_1974 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(3024033..3024512) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404782 YP_003167839.1 CDS ispD NC_013194.1 3024509 3025207 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3024509..3025207) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404783 YP_003167840.1 CDS CAP2UW1_2625 NC_013194.1 3025249 3026067 D PFAM: protein of unknown function DUF52; KEGG: tbd:Tbd_1586 hypothetical protein; hypothetical protein 3025249..3026067 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404784 YP_003167841.1 CDS CAP2UW1_2626 NC_013194.1 3026057 3026605 D PFAM: AMMECR1 domain protein; KEGG: dar:Daro_1970 AMMECR1; AMMECR1 domain-containing protein 3026057..3026605 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404785 YP_003167842.1 CDS CAP2UW1_2627 NC_013194.1 3026590 3027711 D PFAM: Radical SAM domain protein; KEGG: dar:Daro_1969 radical SAM; Radical SAM domain-containing protein 3026590..3027711 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404786 YP_003167843.1 CDS CAP2UW1_2628 NC_013194.1 3027708 3028376 D KEGG: dar:Daro_1968 hypothetical protein; hypothetical protein 3027708..3028376 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404787 YP_003167844.1 CDS CAP2UW1_2629 NC_013194.1 3028393 3029628 D PFAM: Forkhead-associated protein; KEGG: sus:Acid_0083 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes-like protein; FHA domain-containing protein 3028393..3029628 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404788 YP_003167845.1 CDS CAP2UW1_2630 NC_013194.1 3029959 3030528 D KEGG: bmu:Bmul_5109 hypothetical protein; hypothetical protein 3029959..3030528 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404789 YP_003167846.1 CDS CAP2UW1_2631 NC_013194.1 3030525 3032369 D KEGG: eba:ebA1980 DnaK-related protein; DnaK-like protein 3030525..3032369 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404790 YP_003167847.1 CDS CAP2UW1_2632 NC_013194.1 3032396 3035209 D KEGG: eba:ebA1979 DnaK-related protein; DnaK-like protein 3032396..3035209 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404791 YP_003167848.1 CDS CAP2UW1_2633 NC_013194.1 3035482 3035700 D hypothetical protein 3035482..3035700 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404792 YP_003167849.1 CDS CAP2UW1_2634 NC_013194.1 3035831 3036322 R SMART: Water Stress and Hypersensitive response domain protein; KEGG: abo:ABO_2105 hypothetical protein; Water Stress and Hypersensitive response domain-containing protein complement(3035831..3036322) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404793 YP_003167850.1 CDS CAP2UW1_2635 NC_013194.1 3036310 3037194 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: dar:Daro_3339 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(3036310..3037194) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404794 YP_003167851.1 CDS CAP2UW1_2636 NC_013194.1 3037194 3038072 R KEGG: dar:Daro_3340 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(3037194..3038072) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404795 YP_003167852.1 CDS CAP2UW1_2637 NC_013194.1 3038143 3038556 R PFAM: protein of unknown function UPF0047; KEGG: eba:ebA855 hypothetical protein; hypothetical protein complement(3038143..3038556) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404796 YP_003167853.1 CDS CAP2UW1_2638 NC_013194.1 3038578 3039117 R PFAM: protein of unknown function DUF924; KEGG: hch:HCH_00198 hypothetical protein; hypothetical protein complement(3038578..3039117) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404797 YP_003167854.1 CDS CAP2UW1_2639 NC_013194.1 3039171 3039590 R PFAM: Class I peptide chain release factor; KEGG: dar:Daro_0536 class I peptide chain release factor; Class I peptide chain release factor complement(3039171..3039590) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404798 YP_003167855.1 CDS CAP2UW1_2640 NC_013194.1 3039598 3040173 R PFAM: protein of unknown function DUF1415; KEGG: lch:Lcho_2114 protein of unknown function DUF1415; hypothetical protein complement(3039598..3040173) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404799 YP_003167856.1 CDS CAP2UW1_2641 NC_013194.1 3040336 3041469 D PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1030 putative conserved exported protein; FAD dependent oxidoreductase 3040336..3041469 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404800 YP_003167857.1 CDS CAP2UW1_2642 NC_013194.1 3041474 3041905 D PFAM: PilT protein domain protein; KEGG: tbd:Tbd_2605 protein of unknown function DUF132; PilT protein domain-containing protein 3041474..3041905 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404801 YP_003167858.1 CDS CAP2UW1_2643 NC_013194.1 3041990 3042766 R PFAM: protein of unknown function DUF328; KEGG: rso:RSc2009 hypothetical protein; hypothetical protein complement(3041990..3042766) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404802 YP_003167859.1 CDS CAP2UW1_2644 NC_013194.1 3042914 3044902 D KEGG: azo:azo3186 hypothetical protein; hypothetical protein 3042914..3044902 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404803 YP_003167860.1 CDS CAP2UW1_2645 NC_013194.1 3044943 3045899 R KEGG: mmu:100042292 predicted gene, 100042292; hypothetical protein complement(3044943..3045899) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404804 YP_003167861.1 CDS CAP2UW1_2646 NC_013194.1 3045883 3046464 R PFAM: stress protein; KEGG: nfa:nfa55680 hypothetical protein; stress protein complement(3045883..3046464) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404805 YP_003167862.1 CDS CAP2UW1_2647 NC_013194.1 3046546 3047250 R SMART: von Willebrand factor type A; KEGG: bvi:Bcep1808_2262 hypothetical protein; von Willebrand factor type A complement(3046546..3047250) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404806 YP_003167863.1 CDS CAP2UW1_2648 NC_013194.1 3047263 3048390 R PFAM: toxic anion resistance family protein; KEGG: bvi:Bcep1808_2263 toxic anion resistance family protein; toxic anion resistance family protein complement(3047263..3048390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404807 YP_003167864.1 CDS CAP2UW1_2649 NC_013194.1 3048642 3050018 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3048642..3050018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404808 YP_003167865.1 CDS CAP2UW1_2650 NC_013194.1 3050021 3051124 R KEGG: dar:Daro_1986 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(3050021..3051124) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404809 YP_003167866.1 CDS CAP2UW1_2651 NC_013194.1 3051124 3052026 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_1985 regulatory protein, LysR:LysR, substrate-binding; LysR family transcriptional regulator complement(3051124..3052026) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404810 YP_003167867.1 CDS CAP2UW1_2652 NC_013194.1 3052220 3053482 D PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1984 hypothetical protein; lysophospholipid transporter LplT 3052220..3053482 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404811 YP_003167868.1 CDS CAP2UW1_2653 NC_013194.1 3053501 3055123 R TIGRFAM: indolepyruvate/phenylpyruvate decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rfr:Rfer_0518 thiamine pyrophosphate enzyme-like TPP binding protein; indolepyruvate/phenylpyruvate decarboxylase complement(3053501..3055123) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404812 YP_003167869.1 CDS CAP2UW1_2654 NC_013194.1 3055245 3055766 D PFAM: regulatory protein AsnC/Lrp family; KEGG: azo:azo2407 Bkd operon transcriptional regulator; AsnC family transcriptional regulator 3055245..3055766 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404813 YP_003167870.1 CDS CAP2UW1_2655 NC_013194.1 3055763 3056260 R PFAM: protein of unknown function DUF477; KEGG: bja:bll7265 hypothetical protein; hypothetical protein complement(3055763..3056260) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404814 YP_003167871.1 CDS CAP2UW1_2656 NC_013194.1 3056260 3057189 R PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3401 protein of unknown function DUF477; hypothetical protein complement(3056260..3057189) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404815 YP_003167872.1 CDS CAP2UW1_2657 NC_013194.1 3057193 3057849 R PFAM: LemA family protein; KEGG: bte:BTH_I0284 LemA family protein; LemA family protein complement(3057193..3057849) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404816 YP_003167873.1 CDS CAP2UW1_2658 NC_013194.1 3057930 3058793 R TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: dar:Daro_1983 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein complement(3057930..3058793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404817 YP_003167874.1 CDS CAP2UW1_2659 NC_013194.1 3058790 3059266 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_1982 SSU ribosomal protein S18P alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3058790..3059266) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404818 YP_003167875.1 CDS CAP2UW1_2660 NC_013194.1 3059263 3059949 R PFAM: peptidase M22 glycoprotease; KEGG: dar:Daro_1981 peptidase M22, glycoprotease; peptidase M22 glycoprotease complement(3059263..3059949) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404819 YP_003167876.1 CDS CAP2UW1_2661 NC_013194.1 3060189 3061397 D TIGRFAM: glycogen synthase; PFAM: glycosyl transferase group 1; KEGG: cau:Caur_3073 glycogen synthase; glycogen synthase 3060189..3061397 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404820 YP_003167877.1 CDS CAP2UW1_2662 NC_013194.1 3061540 3063501 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: afw:Anae109_3071 alpha amylase catalytic region; alpha amylase catalytic subunit 3061540..3063501 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404821 YP_003167878.1 CDS CAP2UW1_2663 NC_013194.1 3063616 3066195 R KEGG: syn:sll1356 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase complement(3063616..3066195) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404822 YP_003167879.1 CDS CAP2UW1_2664 NC_013194.1 3066523 3067644 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_0458 secretion protein HlyD; RND family efflux transporter MFP subunit 3066523..3067644 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404823 YP_003167880.1 CDS CAP2UW1_2665 NC_013194.1 3067641 3070703 D PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein; acriflavin resistance protein 3067641..3070703 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404824 YP_003167881.1 CDS CAP2UW1_2666 NC_013194.1 3070994 3072325 D PFAM: enolase; KEGG: tde:TDE0949 enolase; phosphopyruvate hydratase 3070994..3072325 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404825 YP_003167882.1 CDS CAP2UW1_2667 NC_013194.1 3072386 3073525 R KEGG: fre:Franean1_7082 hypothetical protein; hypothetical protein complement(3072386..3073525) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404826 YP_003167883.1 CDS CAP2UW1_2668 NC_013194.1 3073696 3074994 R PFAM: major facilitator superfamily MFS_1; KEGG: cau:Caur_0011 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3073696..3074994) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404827 YP_003167884.1 CDS CAP2UW1_2669 NC_013194.1 3075081 3076091 R KEGG: cau:Caur_0010 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(3075081..3076091) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404828 YP_003167885.1 CDS CAP2UW1_2670 NC_013194.1 3076348 3076662 D PFAM: regulatory protein ArsR; KEGG: reh:H16_A2175 transcriptional regulator, ArsR-family; ArsR family transcriptional regulator 3076348..3076662 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404829 YP_003167886.1 CDS CAP2UW1_2671 NC_013194.1 3076663 3077721 D TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2636 arsenical-resistance protein ACR3; arsenical-resistance protein 3076663..3077721 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404830 YP_003167887.1 CDS CAP2UW1_2672 NC_013194.1 3077907 3078515 R hypothetical protein complement(3077907..3078515) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404831 YP_003167888.1 CDS CAP2UW1_2673 NC_013194.1 3078855 3079169 D KEGG: rpe:RPE_2352 hypothetical protein; hypothetical protein 3078855..3079169 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404832 YP_003167889.1 CDS CAP2UW1_2674 NC_013194.1 3079188 3080441 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: rpc:RPC_1929 ferric reductase-like transmembrane component-like; Ferric reductase transmembrane domain-containing protein 3079188..3080441 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404833 YP_003167890.1 CDS CAP2UW1_2675 NC_013194.1 3080441 3080809 D PFAM: cytochrome b5; KEGG: rpc:RPC_1930 cytochrome b5; cytochrome b5 3080441..3080809 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404834 YP_003167891.1 CDS CAP2UW1_2676 NC_013194.1 3080963 3082312 D produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3080963..3082312 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404835 YP_003167892.1 CDS CAP2UW1_2677 NC_013194.1 3082309 3082713 D KEGG: ppd:Ppro_0850 F0F1-type ATP synthase epsilon subunit-like protein; F0F1-type ATP synthase subunit epsilon-like protein 3082309..3082713 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404836 YP_003167893.1 CDS CAP2UW1_2678 NC_013194.1 3082798 3083070 D KEGG: ppd:Ppro_0849 putative ATP synthase protein I; putative ATP synthase protein I 3082798..3083070 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404837 YP_003167894.1 CDS CAP2UW1_2679 NC_013194.1 3083070 3083780 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3083070..3083780 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404838 YP_003167895.1 CDS CAP2UW1_2680 NC_013194.1 3083777 3084043 D PFAM: H+transporting two-sector ATPase C subunit; KEGG: lpc:LPC_2223 hypothetical protein; H+transporting two-sector ATPase subunit C 3083777..3084043 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404839 YP_003167896.1 CDS CAP2UW1_2681 NC_013194.1 3084053 3084799 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: hch:HCH_00918 F0F1-type ATP synthase, subunit B; H+transporting two-sector ATPase subunit B/B' 3084053..3084799 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404840 YP_003167897.1 CDS CAP2UW1_2682 NC_013194.1 3084789 3086282 D produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3084789..3086282 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404841 YP_003167898.1 CDS CAP2UW1_2683 NC_013194.1 3086377 3089763 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: rrs:RoseRS_1479 helicase domain protein; helicase domain-containing protein 3086377..3089763 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404842 YP_003167899.1 CDS CAP2UW1_2684 NC_013194.1 3089766 3093344 D KEGG: npu:Npun_AR269 putative transcriptional regulator; putative transcriptional regulator 3089766..3093344 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404843 YP_003167900.1 CDS CAP2UW1_2685 NC_013194.1 3093362 3094555 D KEGG: pvi:Cvib_0637 hypothetical protein; ATPase-like protein 3093362..3094555 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404844 YP_003167901.1 CDS CAP2UW1_2686 NC_013194.1 3094552 3095148 D hypothetical protein 3094552..3095148 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404845 YP_003167902.1 CDS CAP2UW1_2687 NC_013194.1 3095574 3096779 D PFAM: SMC domain protein; KEGG: bpe:BP3115 hypothetical protein; SMC domain-containing protein 3095574..3096779 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404846 YP_003167903.1 CDS CAP2UW1_2688 NC_013194.1 3096776 3097405 D KEGG: rba:RB459 hypothetical protein; hypothetical protein 3096776..3097405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404847 YP_003167904.1 CDS CAP2UW1_2689 NC_013194.1 3097389 3098246 D KEGG: ppd:Ppro_0844 ATP synthase F1, gamma subunit; ATP synthase F1 subunit gamma 3097389..3098246 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404848 YP_003167905.1 CDS CAP2UW1_2690 NC_013194.1 3098346 3099125 R KEGG: sat:SYN_02957 hypothetical membrane protein; hypothetical protein complement(3098346..3099125) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404849 YP_003167906.1 CDS CAP2UW1_2691 NC_013194.1 3099443 3099922 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: azo:azo0102 putative thiol:disulphide oxidoreductase; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 3099443..3099922 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404850 YP_003167907.1 CDS CAP2UW1_2692 NC_013194.1 3099933 3101030 D PFAM: transglutaminase domain protein; KEGG: eba:ebA3478 predicted transglutaminase-like enzyme, putative cysteine protease; transglutaminase domain-containing protein 3099933..3101030 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404851 YP_003167908.1 CDS CAP2UW1_2693 NC_013194.1 3101103 3101615 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bpl:BURPS1106A_0069 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(3101103..3101615) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404852 YP_003167909.1 CDS CAP2UW1_2694 NC_013194.1 3101633 3102460 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B4754 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3101633..3102460) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404853 YP_003167910.1 CDS CAP2UW1_2695 NC_013194.1 3102526 3103713 R PFAM: Thiolase; KEGG: mpt:Mpe_A0178 lipid-transfer protein; lipid-transfer protein complement(3102526..3103713) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404854 YP_003167911.1 CDS CAP2UW1_2697 NC_013194.1 3104324 3105937 R PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2728 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3104324..3105937) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404856 YP_003167912.1 CDS CAP2UW1_2698 NC_013194.1 3105987 3106718 R PFAM: Putative ParB-like nuclease; KEGG: rso:RSc0706 hypothetical protein; Putative ParB-like nuclease complement(3105987..3106718) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404857 YP_003167913.1 CDS CAP2UW1_2699 NC_013194.1 3107421 3107708 R KEGG: mca:MCA1588 hypothetical protein; hypothetical protein complement(3107421..3107708) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404858 YP_003167914.1 CDS CAP2UW1_2700 NC_013194.1 3108170 3110941 D PFAM: peptidase M16 domain protein; KEGG: bbr:BB3932 putative zinc protease; peptidase M16 domain-containing protein 3108170..3110941 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404859 YP_003167915.1 CDS CAP2UW1_2701 NC_013194.1 3111019 3111453 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: rfr:Rfer_2963 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(3111019..3111453) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404860 YP_003167916.1 CDS CAP2UW1_2703 NC_013194.1 3111795 3129359 R KEGG: psp:PSPPH_0815 calcium binding hemolysin protein, putative; TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; Ig family protein; Haemolysin-type calcium binding domain protein; SMART: Dystroglycan-type cadherin domain protein; outer membrane adhesin like protein complement(3111795..3129359) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404862 YP_003167917.1 CDS CAP2UW1_2704 NC_013194.1 3129356 3130636 R hypothetical protein complement(3129356..3130636) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404863 YP_003167918.1 CDS CAP2UW1_2705 NC_013194.1 3130858 3132999 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: gur:Gura_2547 ABC transporter related; ABC transporter complement(3130858..3132999) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404864 YP_003167919.1 CDS CAP2UW1_2706 NC_013194.1 3133189 3133479 R PFAM: protein of unknown function DUF1330; KEGG: mag:amb4166 hypothetical protein; hypothetical protein complement(3133189..3133479) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404865 YP_003167920.1 CDS CAP2UW1_2708 NC_013194.1 3136824 3137894 R KEGG: cch:Cag_0293 putative cytoplasmic protein; putative cytoplasmic protein complement(3136824..3137894) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404867 YP_003167921.1 CDS CAP2UW1_2709 NC_013194.1 3137891 3139213 R PFAM: restriction modification system DNA specificity domain; KEGG: cau:Caur_1813 restriction modification system DNA specificity domain; restriction modification system DNA specificity protein-containing protein complement(3137891..3139213) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404868 YP_003167922.1 CDS CAP2UW1_2710 NC_013194.1 3139331 3140476 R PFAM: protein of unknown function DUF1016; KEGG: vei:Veis_1750 protein of unknown function DUF1016; hypothetical protein complement(3139331..3140476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404869 YP_003167923.1 CDS CAP2UW1_2711 NC_013194.1 3140466 3142085 R PFAM: N-6 DNA methylase; KEGG: mhu:Mhun_2789 N-6 DNA methylase; N-6 DNA methylase complement(3140466..3142085) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404870 YP_003167924.1 CDS CAP2UW1_2712 NC_013194.1 3142405 3143364 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mpt:Mpe_A1917 hypothetical protein; hypothetical protein 3142405..3143364 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404871 YP_003167925.1 CDS CAP2UW1_2713 NC_013194.1 3143372 3143542 R KEGG: pne:Pnec_0603 protein of unknown function DUF1330; hypothetical protein complement(3143372..3143542) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404872 YP_003167926.1 CDS CAP2UW1_2714 NC_013194.1 3143570 3144079 R KEGG: bxe:Bxe_B0621 hypothetical protein; hypothetical protein complement(3143570..3144079) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404873 YP_003167927.1 CDS CAP2UW1_2715 NC_013194.1 3144098 3144253 R KEGG: rfr:Rfer_2048 hypothetical protein; hypothetical protein complement(3144098..3144253) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404874 YP_003167928.1 CDS CAP2UW1_2716 NC_013194.1 3144320 3145246 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pmy:Pmen_1292 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3144320..3145246) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404875 YP_003167929.1 CDS CAP2UW1_2717 NC_013194.1 3145334 3146122 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: azo:azo1280 ferredoxin-NADP+ reductase; Oxidoreductase FAD-binding domain-containing protein 3145334..3146122 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404876 YP_003167930.1 CDS CAP2UW1_2718 NC_013194.1 3146532 3147551 D KEGG: aba:Acid345_0352 hypothetical protein; hypothetical protein 3146532..3147551 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404877 YP_003167931.1 CDS CAP2UW1_2719 NC_013194.1 3147879 3148313 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: azo:azo0248 probable DnaK suppressor protein; TraR/DksA family transcriptional regulator 3147879..3148313 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404878 YP_003167932.1 CDS CAP2UW1_2720 NC_013194.1 3148345 3150021 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azo:azo1913 hypothetical protein; FAD dependent oxidoreductase complement(3148345..3150021) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404879 YP_003167933.1 CDS CAP2UW1_2721 NC_013194.1 3150052 3150696 R PFAM: class II aldolase/adducin family protein; KEGG: dar:Daro_3336 class II aldolase/adducin, N-terminal; class II aldolase/adducin family protein complement(3150052..3150696) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404880 YP_003167934.1 CDS mtnA NC_013194.1 3150689 3151786 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(3150689..3151786) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404881 YP_003167935.1 CDS CAP2UW1_2723 NC_013194.1 3151897 3152454 D KEGG: dar:Daro_1791 hypothetical protein; hypothetical protein 3151897..3152454 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404882 YP_003167936.1 CDS CAP2UW1_2724 NC_013194.1 3152476 3153249 R PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppr:PBPRA1878 putative lipase/esterase protein; Alpha/beta hydrolase fold-3 domain-containing protein complement(3152476..3153249) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404883 YP_003167937.1 CDS CAP2UW1_2725 NC_013194.1 3153627 3154304 D PFAM: beta-lactamase domain protein; KEGG: sfu:Sfum_1138 beta-lactamase domain protein; beta-lactamase domain-containing protein 3153627..3154304 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404884 YP_003167938.1 CDS CAP2UW1_2727 NC_013194.1 3155582 3155923 D KEGG: mgm:Mmc1_0553 hypothetical protein; hypothetical protein 3155582..3155923 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404886 YP_003167939.1 CDS pagP NC_013194.1 3156071 3156625 D catalyzes the transfer of palmitate to lipid A; palmitoyl transferase 3156071..3156625 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404887 YP_003167940.1 CDS CAP2UW1_2729 NC_013194.1 3156680 3158635 R KEGG: dar:Daro_3725 hypothetical protein; hypothetical protein complement(3156680..3158635) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404888 YP_003167941.1 CDS CAP2UW1_2730 NC_013194.1 3158724 3159551 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(3158724..3159551) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404889 YP_003167942.1 CDS CAP2UW1_2731 NC_013194.1 3159649 3161409 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_3727 TPR repeat:tetratricopeptide TPR_4; hypothetical protein 3159649..3161409 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404890 YP_003167943.1 CDS CAP2UW1_2732 NC_013194.1 3161412 3162035 D PFAM: outer membrane lipoprotein LolB; KEGG: dar:Daro_3728 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 3161412..3162035 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404891 YP_003167944.1 CDS CAP2UW1_2733 NC_013194.1 3162041 3162901 D KEGG: dar:Daro_3729 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 3162041..3162901 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404892 YP_003167945.1 CDS CAP2UW1_2734 NC_013194.1 3163172 3164122 D KEGG: dar:Daro_3730 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 3163172..3164122 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404894 YP_003167946.1 CDS CAP2UW1_2735 NC_013194.1 3164201 3164812 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 3164201..3164812 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404895 YP_003167947.1 CDS CAP2UW1_2736 NC_013194.1 3164893 3165468 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3164893..3165468 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404896 YP_003167948.1 CDS CAP2UW1_2737 NC_013194.1 3165479 3166570 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: neu:NE1823 translation-associated GTPase; GTP-binding protein YchF 3165479..3166570 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404897 YP_003167949.1 CDS CAP2UW1_2738 NC_013194.1 3166894 3168015 D PFAM: regulatory protein DeoR; filamentation induced by cAMP protein Fic; KEGG: neu:NE2505 hypothetical protein; filamentation induced by cAMP protein Fic 3166894..3168015 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404898 YP_003167950.1 CDS CAP2UW1_2739 NC_013194.1 3168323 3168697 D PFAM: Secreted repeat of unknown function; KEGG: dar:Daro_0520 secreted repeat of unknown function; hypothetical protein 3168323..3168697 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404899 YP_003167951.1 CDS CAP2UW1_2740 NC_013194.1 3168707 3169210 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: har:HEAR3276 putative RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 3168707..3169210 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404900 YP_003167952.1 CDS CAP2UW1_2741 NC_013194.1 3169207 3169968 D KEGG: mag:amb2645 predicted transmembrane transcriptional regulator; putative transmembrane anti-sigma factor 3169207..3169968 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404901 YP_003167953.1 CDS CAP2UW1_2743 NC_013194.1 3170695 3171219 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 3170695..3171219 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404903 YP_003167954.1 CDS CAP2UW1_2744 NC_013194.1 3171349 3172671 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 3171349..3172671 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404904 YP_003167955.1 CDS CAP2UW1_2745 NC_013194.1 3172674 3173468 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 3172674..3173468 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404905 YP_003167956.1 CDS CAP2UW1_2746 NC_013194.1 3173465 3173662 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 3173465..3173662 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404906 YP_003167957.1 CDS CAP2UW1_2747 NC_013194.1 3174999 3177635 R PFAM: Sel1 domain protein repeat-containing protein; peptidase C14 caspase catalytic subunit p20; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein; peptidase C14 caspase catalytic subunit p20 complement(3174999..3177635) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404907 YP_003167958.1 CDS CAP2UW1_2748 NC_013194.1 3178518 3179090 R KEGG: sit:TM1040_1986 hypothetical protein; hypothetical protein complement(3178518..3179090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404908 YP_003167959.1 CDS CAP2UW1_2749 NC_013194.1 3179332 3180384 D PFAM: permease; KEGG: dar:Daro_2949 permease; permease 3179332..3180384 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404909 YP_003167960.1 CDS CAP2UW1_2750 NC_013194.1 3180442 3180672 D KEGG: psa:PST_0232 thiol-disulfide isomerase and thioredoxins family protein; thiol-disulfide isomerase and thioredoxins family protein 3180442..3180672 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404910 YP_003167961.1 CDS CAP2UW1_2751 NC_013194.1 3180676 3182826 R KEGG: rec:RHECIAT_PA0000112 putative C-terminal processing peptidase protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(3180676..3182826) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404911 YP_003167962.1 CDS CAP2UW1_2752 NC_013194.1 3182978 3183604 R TIGRFAM: phenylacetic acid degradation protein PaaY; PFAM: transferase hexapeptide repeat containing protein; KEGG: dar:Daro_0385 phenylacetic acid degradation protein PaaY; phenylacetic acid degradation protein PaaY complement(3182978..3183604) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404912 YP_003167963.1 CDS CAP2UW1_2753 NC_013194.1 3183739 3184707 R PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: dar:Daro_0386 phenylacetic acid degradation operon negative regulatory protein PaaX; PaaX family transcriptional regulator complement(3183739..3184707) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404913 YP_003167964.1 CDS CAP2UW1_2754 NC_013194.1 3184801 3185853 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_0368 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; ferredoxin complement(3184801..3185853) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404914 YP_003167965.1 CDS CAP2UW1_2755 NC_013194.1 3185924 3186952 R KEGG: dar:Daro_0369 hypothetical protein; hypothetical protein complement(3185924..3186952) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404915 YP_003167966.1 CDS CAP2UW1_2756 NC_013194.1 3187203 3188870 D TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde Dehydrogenase; KEGG: dar:Daro_0370 phenylacetic acid degradation protein paaN2; phenylacetic acid degradation protein paaN 3187203..3188870 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404916 YP_003167967.1 CDS CAP2UW1_2757 NC_013194.1 3188881 3189672 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3188881..3189672 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404917 YP_003167968.1 CDS CAP2UW1_2758 NC_013194.1 3189678 3191207 D converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation; 3-hydroxy-acyl-CoA dehydrogenase 3189678..3191207 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404918 YP_003167969.1 CDS CAP2UW1_2759 NC_013194.1 3191200 3191727 D TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: dar:Daro_0373 phenylacetic acid degradation-related protein:phenylacetic acid degradation protein PaaD; phenylacetic acid degradation protein PaaD 3191200..3191727 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404919 YP_003167970.1 CDS CAP2UW1_2760 NC_013194.1 3191750 3192955 D KEGG: dar:Daro_0375 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase 3191750..3192955 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404920 YP_003167971.1 CDS CAP2UW1_2761 NC_013194.1 3193017 3193727 R KEGG: gka:GK0748 hypothetical protein; hypothetical protein complement(3193017..3193727) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404921 YP_003167972.1 CDS CAP2UW1_2762 NC_013194.1 3193738 3193908 R hypothetical protein complement(3193738..3193908) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404922 YP_003167973.1 CDS CAP2UW1_2763 NC_013194.1 3194340 3194756 D KEGG: mac:MA3218 hypothetical protein; hypothetical protein 3194340..3194756 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404923 YP_003167974.1 CDS CAP2UW1_2764 NC_013194.1 3194946 3195863 D PFAM: peptidase C1A papain; KEGG: mba:Mbar_A0734 cysteine protease (papain C1 family); peptidase C1A papain 3194946..3195863 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404924 YP_003167975.1 CDS CAP2UW1_2765 NC_013194.1 3196275 3197183 D KEGG: sgr:SGR_3379 hypothetical protein; hypothetical protein 3196275..3197183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404925 YP_003167976.1 CDS CAP2UW1_2766 NC_013194.1 3197292 3197453 R hypothetical protein complement(3197292..3197453) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404926 YP_003167977.1 CDS CAP2UW1_2767 NC_013194.1 3197791 3198897 D PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: lch:Lcho_2589 response regulator receiver modulated metal dependent phosphohydrolase; response regulator receiver modulated metal dependent phosphohydrolase 3197791..3198897 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404927 YP_003167978.1 CDS CAP2UW1_2768 NC_013194.1 3198949 3202173 D KEGG: dar:Daro_3006 PAS; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 3198949..3202173 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404928 YP_003167979.1 CDS CAP2UW1_2769 NC_013194.1 3202313 3203392 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3202313..3203392 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404929 YP_003167980.1 CDS CAP2UW1_2770 NC_013194.1 3203518 3203673 R PFAM: ribosomal protein L33; KEGG: nmn:NMCC_1822 50S ribosomal protein L33; 50S ribosomal protein L33 complement(3203518..3203673) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404930 YP_003167981.1 CDS CAP2UW1_2771 NC_013194.1 3203688 3203921 R PFAM: ribosomal protein L28; KEGG: rfr:Rfer_3180 50S ribosomal protein L28; 50S ribosomal protein L28 complement(3203688..3203921) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404931 YP_003167982.1 CDS CAP2UW1_2772 NC_013194.1 3204536 3207268 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_0814 assimilatory nitrate reductase (NADH) alpha subunit apoprotein; molybdopterin oxidoreductase 3204536..3207268 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404932 YP_003167983.1 CDS CAP2UW1_2773 NC_013194.1 3207288 3208280 D PFAM: Glycosyl transferase, family 3-like; KEGG: dar:Daro_0815 hypothetical protein; glycosyl transferase family protein 3207288..3208280 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404933 YP_003167984.1 CDS CAP2UW1_2774 NC_013194.1 3208289 3208687 D PFAM: NUDIX hydrolase; KEGG: pfo:PflO1_3290 NUDIX hydrolase; NUDIX hydrolase 3208289..3208687 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404934 YP_003167985.1 CDS CAP2UW1_2775 NC_013194.1 3208700 3209041 R PFAM: arsenate reductase and related; KEGG: dar:Daro_2747 conserved hypothetical protein ArsC related; arsenate reductase-like protein complement(3208700..3209041) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404935 YP_003167986.1 CDS CAP2UW1_2776 NC_013194.1 3209120 3209989 R KEGG: mms:mma_0696 hypothetical protein; hypothetical protein complement(3209120..3209989) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404936 YP_003167987.1 CDS CAP2UW1_2777 NC_013194.1 3210397 3212826 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_0816 assimilatory nitrite reductase (NAD(P)H) large subunit precursor; nitrite reductase (NAD(P)H) large subunit 3210397..3212826 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404937 YP_003167988.1 CDS CAP2UW1_2778 NC_013194.1 3212844 3213152 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pau:PA14_41540 assimilatory nitrite reductase small subunit; nitrite reductase (NAD(P)H) small subunit 3212844..3213152 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404938 YP_003167989.1 CDS CAP2UW1_2779 NC_013194.1 3213175 3214386 D PFAM: major facilitator superfamily MFS_1; KEGG: eba:ebA1213 nitrate transporter; major facilitator superfamily protein 3213175..3214386 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404939 YP_003167990.1 CDS CAP2UW1_2780 NC_013194.1 3214467 3216149 D PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; serine/threonine protein kinase; KEGG: dar:Daro_0826 protein kinase:protein phosphatase 2C-like; protein serine/threonine phosphatase 3214467..3216149 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404940 YP_003167991.1 CDS CAP2UW1_2781 NC_013194.1 3216501 3218804 D PFAM: MscS Mechanosensitive ion channel; KEGG: mca:MCA1632 mechanosensitive ion channel family protein; mechanosensitive ion channel protein MscS 3216501..3218804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404941 YP_003167992.1 CDS CAP2UW1_2782 NC_013194.1 3218871 3219416 R KEGG: csa:Csal_0244 hypothetical protein; hypothetical protein complement(3218871..3219416) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404942 YP_003167993.1 CDS CAP2UW1_2783 NC_013194.1 3219476 3220534 R PFAM: phospholipase D/Transphosphatidylase; KEGG: gbe:GbCGDNIH1_0729 cardiolipin synthetase; phospholipase D/transphosphatidylase complement(3219476..3220534) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404943 YP_003167994.1 CDS CAP2UW1_2784 NC_013194.1 3220561 3222387 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_0085 ABC transporter related; ABC transporter complement(3220561..3222387) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404944 YP_003167995.1 CDS CAP2UW1_2785 NC_013194.1 3222566 3223504 R KEGG: sfu:Sfum_1461 hypothetical protein; hypothetical protein complement(3222566..3223504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404945 YP_003167996.1 CDS CAP2UW1_2786 NC_013194.1 3223542 3225107 R KEGG: reu:Reut_B4586 hypothetical protein; hypothetical protein complement(3223542..3225107) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404946 YP_003167997.1 CDS CAP2UW1_2787 NC_013194.1 3225297 3226610 R TIGRFAM: phenylacetate-CoA ligase; KEGG: dar:Daro_3366 phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(3225297..3226610) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404947 YP_003167998.1 CDS CAP2UW1_2788 NC_013194.1 3226790 3228124 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dar:Daro_3365 multi antimicrobial extrusion protein MatE; MATE efflux family protein 3226790..3228124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404948 YP_003167999.1 CDS CAP2UW1_2789 NC_013194.1 3228333 3230372 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug; TonB-dependent receptor 3228333..3230372 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404949 YP_003168000.1 CDS CAP2UW1_2790 NC_013194.1 3230383 3230940 D KEGG: dar:Daro_2786 putative transmembrane protein; hypothetical protein 3230383..3230940 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404950 YP_003168001.1 CDS CAP2UW1_2791 NC_013194.1 3230942 3233335 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: gsu:GSU1928 sensor histidine kinase/response regulator; multi-sensor hybrid histidine kinase 3230942..3233335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404951 YP_003168002.1 CDS CAP2UW1_2792 NC_013194.1 3233335 3235479 D KEGG: bam:Bamb_1597 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 3233335..3235479 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404952 YP_003168003.1 CDS CAP2UW1_2793 NC_013194.1 3235629 3236702 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mpt:Mpe_A1019 diguanylate cyclase; diguanylate cyclase 3235629..3236702 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404953 YP_003168004.1 CDS CAP2UW1_2794 NC_013194.1 3236699 3238150 D TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; Hemerythrin HHE cation binding domain protein; PAS fold-4 domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase; diguanylate cyclase with hemerythrin-like metal-binding domain-containing protein 3236699..3238150 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404954 YP_003168005.1 CDS CAP2UW1_2795 NC_013194.1 3238332 3238787 R KEGG: ngk:NGK_0744 Ag473; hypothetical protein complement(3238332..3238787) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404955 YP_003168006.1 CDS CAP2UW1_2796 NC_013194.1 3238945 3239889 D PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: eba:ebA6563 predicted fructosamine kinase; fructosamine kinase 3238945..3239889 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404956 YP_003168007.1 CDS CAP2UW1_2797 NC_013194.1 3239907 3241568 D KEGG: pol:Bpro_2832 hypothetical protein; hypothetical protein 3239907..3241568 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404957 YP_003168008.1 CDS CAP2UW1_2798 NC_013194.1 3241849 3242151 R KEGG: sru:SRU_1255 trk active potasium channel; hypothetical protein complement(3241849..3242151) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404958 YP_003168009.1 CDS CAP2UW1_2799 NC_013194.1 3242462 3245140 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1851 ATPase, E1-E2 type; HAD superfamily P-type ATPase 3242462..3245140 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404959 YP_003168010.1 CDS CAP2UW1_2800 NC_013194.1 3245144 3246643 D KEGG: rfr:Rfer_1782 hypothetical protein; hypothetical protein 3245144..3246643 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404960 YP_003168011.1 CDS CAP2UW1_2801 NC_013194.1 3247055 3247411 D hypothetical protein 3247055..3247411 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404961 YP_003168012.1 CDS CAP2UW1_2803 NC_013194.1 3248163 3248840 R PFAM: DNA repair protein RadC; KEGG: eba:ebA840 DNA repair protein, RadC; DNA repair protein RadC complement(3248163..3248840) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404963 YP_003168013.1 CDS CAP2UW1_2804 NC_013194.1 3249020 3249742 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_3146 response regulator receiver:transcriptional regulatory protein, C-terminal; winged helix family two component transcriptional regulator 3249020..3249742 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404964 YP_003168014.1 CDS CAP2UW1_2805 NC_013194.1 3249729 3251132 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_3147 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 3249729..3251132 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404965 YP_003168015.1 CDS CAP2UW1_2806 NC_013194.1 3251747 3253078 R PFAM: MscS Mechanosensitive ion channel; KEGG: eba:ebA645 hypothetical protein; mechanosensitive ion channel protein MscS complement(3251747..3253078) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404966 YP_003168016.1 CDS CAP2UW1_2807 NC_013194.1 3253075 3254331 R PFAM: Fmu (Sun) domain protein; KEGG: dar:Daro_3159 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; Fmu (Sun) domain-containing protein complement(3253075..3254331) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404967 YP_003168017.1 CDS CAP2UW1_2808 NC_013194.1 3254334 3255368 R KEGG: dar:Daro_3160 hypothetical protein; hypothetical protein complement(3254334..3255368) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404968 YP_003168018.1 CDS CAP2UW1_2809 NC_013194.1 3255381 3256031 R KEGG: dar:Daro_3161 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; phosphoribosylglycinamide formyltransferase complement(3255381..3256031) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404969 YP_003168019.1 CDS CAP2UW1_2810 NC_013194.1 3256088 3256726 R PFAM: SNARE associated Golgi protein; KEGG: eba:ebA3787 DedA protein (DSG-1 protein); hypothetical protein complement(3256088..3256726) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404970 YP_003168020.1 CDS CAP2UW1_2811 NC_013194.1 3256805 3258652 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dar:Daro_3164 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 3256805..3258652 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404971 YP_003168021.1 CDS CAP2UW1_2812 NC_013194.1 3258649 3259605 D KEGG: dar:Daro_3171 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 3258649..3259605 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404972 YP_003168022.1 CDS CAP2UW1_2813 NC_013194.1 3259636 3261165 R PFAM: cyclic nucleotide-binding; MscS Mechanosensitive ion channel; KEGG: cvi:CV_2330 hypothetical protein; cyclic nucleotide-regulated small mechanosensitive ion channel complement(3259636..3261165) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404973 YP_003168023.1 CDS CAP2UW1_2814 NC_013194.1 3261227 3262522 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: azo:azo2825 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein complement(3261227..3262522) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404974 YP_003168024.1 CDS CAP2UW1_2815 NC_013194.1 3262595 3263674 R KEGG: dar:Daro_1999 radical SAM:molybdenum cofactor synthesis C-terminal; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(3262595..3263674) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404975 YP_003168025.1 CDS CAP2UW1_2816 NC_013194.1 3263826 3264704 R PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: reh:H16_A3609 Zn-dependent protease with chaperone function (HtpX); peptidase M48 Ste24p complement(3263826..3264704) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404976 YP_003168026.1 CDS CAP2UW1_2817 NC_013194.1 3264819 3265205 R TIGRFAM: ribosomal subunit interface protein; KEGG: mmw:Mmwyl1_3632 putative sigma 54 modulation protein/ribosomal protein S30EA; putative sigma 54 modulation protein/30S ribosomal protein S30EA complement(3264819..3265205) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404977 YP_003168027.1 CDS CAP2UW1_2818 NC_013194.1 3265316 3266332 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_3867 transcriptional regulator, LysR family; LysR family transcriptional regulator 3265316..3266332 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404978 YP_003168028.1 CDS CAP2UW1_2819 NC_013194.1 3266438 3267340 D PFAM: import inner membrane translocase subunit Tim44; KEGG: azo:azo1318 hypothetical protein; import inner membrane translocase subunit Tim44 3266438..3267340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404979 YP_003168029.1 CDS CAP2UW1_2820 NC_013194.1 3267387 3268175 R KEGG: lch:Lcho_1706 hypothetical protein; hypothetical protein complement(3267387..3268175) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404980 YP_003168030.1 CDS CAP2UW1_2821 NC_013194.1 3268163 3268810 R KEGG: maq:Maqu_2086 hypothetical protein; hypothetical protein complement(3268163..3268810) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404981 YP_003168031.1 CDS CAP2UW1_2822 NC_013194.1 3268791 3269501 R PFAM: glycosyl transferase family 2; KEGG: csa:Csal_3221 glycosyl transferase, family 2; family 2 glycosyl transferase complement(3268791..3269501) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404982 YP_003168032.1 CDS CAP2UW1_2823 NC_013194.1 3269875 3270009 R hypothetical protein complement(3269875..3270009) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404983 YP_003168033.1 CDS CAP2UW1_2824 NC_013194.1 3270447 3271445 D PFAM: Radical SAM domain protein; KEGG: eba:ebA4360 conserved hypothetical protein, radical SAM family; Radical SAM domain-containing protein 3270447..3271445 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404984 YP_003168034.1 CDS CAP2UW1_2825 NC_013194.1 3271529 3272227 D KEGG: ade:Adeh_3811 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase 3271529..3272227 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404985 YP_003168035.1 CDS CAP2UW1_2826 NC_013194.1 3272395 3274545 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; SNARE associated Golgi protein; KEGG: rfr:Rfer_1621 pyridine nucleotide-disulphide oxidoreductase dimerisation protein; hypothetical protein 3272395..3274545 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404986 YP_003168036.1 CDS CAP2UW1_2827 NC_013194.1 3274551 3275351 D KEGG: lch:Lcho_1708 protein of unknown function DUF547; hypothetical protein 3274551..3275351 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404987 YP_003168037.1 CDS CAP2UW1_2828 NC_013194.1 3275363 3276694 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_5374 ABC transporter, permease protein; TolC family type I secretion outer membrane protein complement(3275363..3276694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404988 YP_003168038.1 CDS CAP2UW1_2829 NC_013194.1 3276697 3278085 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pen:PSEEN4763 heme acquisition transporter, membrane fusion protein HasE; HlyD family type I secretion membrane fusion protein complement(3276697..3278085) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404989 YP_003168039.1 CDS CAP2UW1_2830 NC_013194.1 3278102 3279928 R KEGG: spe:Spro_1596 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase complement(3278102..3279928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404990 YP_003168040.1 CDS CAP2UW1_2831 NC_013194.1 3280207 3281133 D KEGG: pol:Bpro_3822 hypothetical protein; hypothetical protein 3280207..3281133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404991 YP_003168041.1 CDS CAP2UW1_2832 NC_013194.1 3281256 3281546 D hypothetical protein 3281256..3281546 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404992 YP_003168042.1 CDS CAP2UW1_2833 NC_013194.1 3281614 3281904 D hypothetical protein 3281614..3281904 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404993 YP_003168043.1 CDS CAP2UW1_2834 NC_013194.1 3281972 3282262 D hypothetical protein 3281972..3282262 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404994 YP_003168044.1 CDS CAP2UW1_2835 NC_013194.1 3282421 3285075 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: tbd:Tbd_1268 Hpt sensor hybrid histidine kinase; multi-sensor hybrid histidine kinase complement(3282421..3285075) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404995 YP_003168045.1 CDS CAP2UW1_2836 NC_013194.1 3285099 3285938 R KEGG: mrd:Mrad2831_0218 hypothetical protein; hypothetical protein complement(3285099..3285938) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404996 YP_003168046.1 CDS CAP2UW1_2837 NC_013194.1 3286115 3286693 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: bra:BRADO4672 conserved hypothetical protein; putative peroxidase related protein; peroxidase-like protein complement(3286115..3286693) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404997 YP_003168047.1 CDS CAP2UW1_2838 NC_013194.1 3286697 3286855 R hypothetical protein complement(3286697..3286855) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404998 YP_003168048.1 CDS CAP2UW1_2839 NC_013194.1 3286940 3287818 D PFAM: dienelactone hydrolase; KEGG: dar:Daro_0181 twin-arginine translocation pathway signal; carboxymethylenebutenolidase 3286940..3287818 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404999 YP_003168049.1 CDS CAP2UW1_2840 NC_013194.1 3287887 3288561 R KEGG: dar:Daro_3749 hypothetical protein; hypothetical protein complement(3287887..3288561) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405000 YP_003168050.1 CDS CAP2UW1_2841 NC_013194.1 3288579 3290030 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: dar:Daro_3748 succinate semialdehyde dehydrogenase; succinic semialdehyde dehydrogenase complement(3288579..3290030) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405001 YP_003168051.1 CDS CAP2UW1_2842 NC_013194.1 3290076 3290570 D PFAM: NLP/P60 protein; KEGG: dar:Daro_3747 NLP/P60; NLP/P60 protein 3290076..3290570 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405002 YP_003168052.1 CDS CAP2UW1_2843 NC_013194.1 3290582 3291007 R hypothetical protein complement(3290582..3291007) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405003 YP_003168053.1 CDS CAP2UW1_2844 NC_013194.1 3291139 3292875 D PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mag:amb3466 glutathione-regulated potassium-efflux system protein KefB; sodium/hydrogen exchanger 3291139..3292875 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405004 YP_003168054.1 CDS CAP2UW1_2845 NC_013194.1 3293000 3293899 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dar:Daro_1884 radical SAM; Radical SAM domain-containing protein 3293000..3293899 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405005 YP_003168055.1 CDS CAP2UW1_2846 NC_013194.1 3293900 3294712 D PFAM: Silent information regulator protein Sir2; KEGG: eba:ebA2840 transcriptional regulator, Sir2 family; Silent information regulator protein Sir2 3293900..3294712 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405006 YP_003168056.1 CDS CAP2UW1_2847 NC_013194.1 3294760 3295335 D KEGG: dar:Daro_1059 probable transmembrane protein; hypothetical protein 3294760..3295335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405007 YP_003168057.1 CDS CAP2UW1_2848 NC_013194.1 3295372 3296901 D PFAM: metallophosphoesterase; KEGG: bmu:Bmul_4433 metallophosphoesterase; metallophosphoesterase 3295372..3296901 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405008 YP_003168058.1 CDS CAP2UW1_2849 NC_013194.1 3297324 3297965 D KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; transposase, IS4 family protein 3297324..3297965 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405009 YP_003168059.1 CDS CAP2UW1_2850 NC_013194.1 3298156 3299682 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 3298156..3299682 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405010 YP_003168060.1 CDS CAP2UW1_2851 NC_013194.1 3299738 3300541 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein 3299738..3300541 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405011 YP_003168061.1 CDS CAP2UW1_2852 NC_013194.1 3300846 3302075 D PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; transposase IS4 family protein 3300846..3302075 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405012 YP_003168062.1 CDS CAP2UW1_2853 NC_013194.1 3302262 3302867 R KEGG: npu:Npun_R5833 hypothetical protein; hypothetical protein complement(3302262..3302867) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405013 YP_003168063.1 CDS CAP2UW1_2854 NC_013194.1 3303450 3303713 R KEGG: bvi:Bcep1808_3221 putative transmembrane protein; hypothetical protein complement(3303450..3303713) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405014 YP_003168064.1 CDS CAP2UW1_2855 NC_013194.1 3303755 3304975 R KEGG: drm:Dred_2595 hypothetical protein; hypothetical protein complement(3303755..3304975) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405015 YP_003168065.1 CDS CAP2UW1_2856 NC_013194.1 3305264 3306274 R KEGG: swi:Swit_2751 polysaccharide deacetylase; polysaccharide deacetylase complement(3305264..3306274) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405016 YP_003168066.1 CDS CAP2UW1_2857 NC_013194.1 3307578 3308291 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pen:PSEEN0710 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 3307578..3308291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405018 YP_003168067.1 CDS CAP2UW1_2858 NC_013194.1 3308316 3310067 D PFAM: alpha/beta hydrolase fold; KEGG: pfl:PFL_6196 hypothetical protein; alpha/beta hydrolase fold protein 3308316..3310067 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405019 YP_003168068.1 CDS CAP2UW1_2859 NC_013194.1 3310070 3311470 D PFAM: Dual specificity protein phosphatase; KEGG: pau:PA14_31730 putative dual specificity phosphatase; dual specificity protein phosphatase 3310070..3311470 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405020 YP_003168069.1 CDS CAP2UW1_2860 NC_013194.1 3311430 3312398 D PFAM: phosphatidate cytidylyltransferase; KEGG: sml:Smlt4247 putative transmembrane phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3311430..3312398 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405021 YP_003168070.1 CDS CAP2UW1_2861 NC_013194.1 3312409 3313014 R KEGG: mxa:MXAN_3853 hypothetical protein; hypothetical protein complement(3312409..3313014) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405022 YP_003168071.1 CDS CAP2UW1_2862 NC_013194.1 3313125 3313943 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dar:Daro_1757 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(3313125..3313943) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405023 YP_003168072.1 CDS rnhB NC_013194.1 3313940 3314536 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(3313940..3314536) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405024 YP_003168073.1 CDS CAP2UW1_2864 NC_013194.1 3314517 3315701 R KEGG: dar:Daro_1755 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(3314517..3315701) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405025 YP_003168074.1 CDS CAP2UW1_2865 NC_013194.1 3315698 3316468 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(3315698..3316468) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405026 YP_003168075.1 CDS fabZ NC_013194.1 3316488 3316925 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3316488..3316925) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405027 YP_003168076.1 CDS CAP2UW1_2867 NC_013194.1 3317143 3317661 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: dar:Daro_1751 outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp complement(3317143..3317661) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405028 YP_003168077.1 CDS CAP2UW1_2868 NC_013194.1 3317677 3319977 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dar:Daro_1750 surface antigen (D15):surface antigen variable number; outer membrane protein assembly complex, YaeT protein complement(3317677..3319977) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405029 YP_003168078.1 CDS CAP2UW1_2869 NC_013194.1 3319982 3321373 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: dar:Daro_1749 peptidase M50, putative membrane-associated zinc metallopeptidase; membrane-associated zinc metalloprotease complement(3319982..3321373) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405030 YP_003168079.1 CDS CAP2UW1_2870 NC_013194.1 3321346 3322551 R KEGG: dar:Daro_1748 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3321346..3322551) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405031 YP_003168080.1 CDS CAP2UW1_2871 NC_013194.1 3322551 3323372 R PFAM: phosphatidate cytidylyltransferase; KEGG: azo:azo1904 putative phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3322551..3323372) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405032 YP_003168081.1 CDS CAP2UW1_2872 NC_013194.1 3323380 3324174 R KEGG: dar:Daro_1746 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; UDP diphosphate synthase complement(3323380..3324174) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405033 YP_003168082.1 CDS CAP2UW1_2873 NC_013194.1 3324198 3324758 R PFAM: ribosome recycling factor; KEGG: azo:azo1906 Frr protein; ribosome recycling factor complement(3324198..3324758) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405034 YP_003168083.1 CDS pyrH NC_013194.1 3324770 3325492 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(3324770..3325492) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405035 YP_003168084.1 CDS tsf NC_013194.1 3325554 3326450 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(3325554..3326450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405036 YP_003168085.1 CDS CAP2UW1_2876 NC_013194.1 3326563 3327306 R PFAM: ribosomal protein S2; KEGG: azo:azo1909 30S ribosomal protein S2; 30S ribosomal protein S2 complement(3326563..3327306) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405037 YP_003168086.1 CDS CAP2UW1_2877 NC_013194.1 3327636 3328436 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: dar:Daro_1740 methionine aminopeptidase; methionine aminopeptidase 3327636..3328436 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405038 YP_003168087.1 CDS CAP2UW1_2878 NC_013194.1 3328443 3331031 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3328443..3331031 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405039 YP_003168088.1 CDS CAP2UW1_2879 NC_013194.1 3331552 3332055 D hypothetical protein 3331552..3332055 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405040 YP_003168089.1 CDS CAP2UW1_2880 NC_013194.1 3332109 3332429 D hypothetical protein 3332109..3332429 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405041 YP_003168090.1 CDS CAP2UW1_2881 NC_013194.1 3332426 3333343 D KEGG: net:Neut_0481 hypothetical protein; hypothetical protein 3332426..3333343 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405042 YP_003168091.1 CDS CAP2UW1_2882 NC_013194.1 3333336 3334481 D KEGG: neu:NE1634 hypothetical protein; hypothetical protein 3333336..3334481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405043 YP_003168092.1 CDS CAP2UW1_2883 NC_013194.1 3334578 3336410 R PFAM: protein of unknown function DUF323; peptidase C14 caspase catalytic subunit p20; KEGG: sfu:Sfum_0556 peptidase C14, caspase catalytic subunit P20; hypothetical protein complement(3334578..3336410) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405044 YP_003168093.1 CDS CAP2UW1_2884 NC_013194.1 3336474 3338786 D PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3523 permease of the major facilitator superfamily; major facilitator superfamily protein 3336474..3338786 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405045 YP_003168094.1 CDS CAP2UW1_2885 NC_013194.1 3338783 3339805 D KEGG: mag:amb3522 ABC-type uncharacterized transport system, periplasmic component; ABC transporter substrate-binding protein 3338783..3339805 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405046 YP_003168095.1 CDS CAP2UW1_2886 NC_013194.1 3339796 3340686 D PFAM: formyl transferase domain protein; KEGG: mag:amb3521 methionyl-tRNA formyltransferase; formyl transferase domain-containing protein 3339796..3340686 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405047 YP_003168096.1 CDS CAP2UW1_2887 NC_013194.1 3340746 3343874 D KEGG: dar:Daro_1942 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 3340746..3343874 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405048 YP_003168097.1 CDS CAP2UW1_2888 NC_013194.1 3343905 3345230 R KEGG: dar:Daro_2751 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG complement(3343905..3345230) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405049 YP_003168098.1 CDS CAP2UW1_2889 NC_013194.1 3345404 3345619 R hypothetical protein complement(3345404..3345619) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405050 YP_003168099.1 CDS CAP2UW1_2890 NC_013194.1 3345927 3346736 D KEGG: azo:azo1420 hypothetical protein; hypothetical protein 3345927..3346736 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405051 YP_003168100.1 CDS CAP2UW1_2891 NC_013194.1 3346751 3347605 R PFAM: extracellular solute-binding protein family 3; KEGG: sil:SPO2658 glutamate/aspartate ABC transporter, periplasmic substrate-binding protein; family 3 extracellular solute-binding protein complement(3346751..3347605) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405052 YP_003168101.1 CDS CAP2UW1_2892 NC_013194.1 3347698 3348483 R KEGG: dar:Daro_1288 propable PolB; propable PolB complement(3347698..3348483) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405053 YP_003168102.1 CDS cysM NC_013194.1 3348491 3349390 R catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B complement(3348491..3349390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405054 YP_003168103.1 CDS CAP2UW1_2894 NC_013194.1 3349383 3350387 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dar:Daro_1286 ADP-glyceromanno-heptose 6-epimerase precursor; ADP-L-glycero-D-manno-heptose-6-epimerase complement(3349383..3350387) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405055 YP_003168104.1 CDS CAP2UW1_2895 NC_013194.1 3350400 3351332 R TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: dar:Daro_1285 D-alpha,beta-D-heptose 7-phosphate 1-kinase; bifunctional protein RfaE complement(3350400..3351332) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405056 YP_003168105.1 CDS CAP2UW1_2896 NC_013194.1 3351416 3352585 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_1283 hypothetical protein; hypothetical protein complement(3351416..3352585) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405057 YP_003168106.1 CDS CAP2UW1_2897 NC_013194.1 3352605 3352886 R KEGG: eba:ebB29 hypothetical protein; hypothetical protein complement(3352605..3352886) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405058 YP_003168107.1 CDS ihfB NC_013194.1 3352952 3353245 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(3352952..3353245) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405059 YP_003168108.1 CDS rpsA NC_013194.1 3353255 3354955 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(3353255..3354955) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405060 YP_003168109.1 CDS CAP2UW1_2900 NC_013194.1 3355139 3357106 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation; bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase complement(3355139..3357106) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405061 YP_003168110.1 CDS CAP2UW1_2901 NC_013194.1 3357103 3358005 R PFAM: Prephenate dehydrogenase; KEGG: dar:Daro_1234 prephenate dehydrogenase; prephenate dehydrogenase complement(3357103..3358005) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405062 YP_003168111.1 CDS CAP2UW1_2902 NC_013194.1 3358016 3359104 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3358016..3359104) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405063 YP_003168112.1 CDS CAP2UW1_2903 NC_013194.1 3359128 3360219 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dar:Daro_1232 prephenate dehydratase; chorismate mutase complement(3359128..3360219) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405064 YP_003168113.1 CDS CAP2UW1_2904 NC_013194.1 3360320 3362938 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(3360320..3362938) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405065 YP_003168114.1 CDS CAP2UW1_2905 NC_013194.1 3363109 3363231 D hypothetical protein 3363109..3363231 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405066 YP_003168115.1 CDS CAP2UW1_2906 NC_013194.1 3363224 3364891 R KEGG: rrs:RoseRS_2583 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(3363224..3364891) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405067 YP_003168116.1 CDS CAP2UW1_2907 NC_013194.1 3364872 3365411 R KEGG: cch:Cag_0872 hypothetical protein; hypothetical protein complement(3364872..3365411) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405068 YP_003168117.1 CDS CAP2UW1_2909 NC_013194.1 3366439 3366924 R KEGG: mpt:Mpe_A1029 hypothetical protein; hypothetical protein complement(3366439..3366924) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405070 YP_003168118.1 CDS CAP2UW1_2910 NC_013194.1 3367058 3368083 R KEGG: reu:Reut_A2151 hypothetical protein; hypothetical protein complement(3367058..3368083) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405071 YP_003168119.1 CDS CAP2UW1_2911 NC_013194.1 3368187 3369503 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3368187..3369503) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405072 YP_003168120.1 CDS CAP2UW1_2912 NC_013194.1 3369500 3370657 R Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(3369500..3370657) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405073 YP_003168121.1 CDS CAP2UW1_2913 NC_013194.1 3370654 3370839 R KEGG: dar:Daro_2976 hypothetical protein; hypothetical protein complement(3370654..3370839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405074 YP_003168122.1 CDS CAP2UW1_2914 NC_013194.1 3370836 3371723 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dar:Daro_2977 HflC; HflC protein complement(3370836..3371723) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405075 YP_003168123.1 CDS CAP2UW1_2915 NC_013194.1 3371723 3372991 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: dar:Daro_2978 HflK; HflK protein complement(3371723..3372991) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405076 YP_003168124.1 CDS CAP2UW1_2916 NC_013194.1 3373012 3374184 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: dar:Daro_2979 GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(3373012..3374184) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405077 YP_003168125.1 CDS CAP2UW1_2917 NC_013194.1 3374299 3374538 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: azo:azo0932 RNA-binding regulatory protein; RNA chaperone Hfq complement(3374299..3374538) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405078 YP_003168126.1 CDS CAP2UW1_2918 NC_013194.1 3374788 3375684 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_2396 hypothetical protein; hypothetical protein 3374788..3375684 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405079 YP_003168127.1 CDS CAP2UW1_2919 NC_013194.1 3375674 3376741 D KEGG: eba:ebA7214 hypothetical protein, possible molybdopterin biosynthesis protein MoeY; hypothetical protein 3375674..3376741 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405080 YP_003168128.1 CDS CAP2UW1_2920 NC_013194.1 3376761 3377531 R PFAM: beta-lactamase domain protein; KEGG: mbn:Mboo_1287 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3376761..3377531) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405081 YP_003168129.1 CDS CAP2UW1_2921 NC_013194.1 3377604 3377774 R hypothetical protein complement(3377604..3377774) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405082 YP_003168130.1 CDS CAP2UW1_2922 NC_013194.1 3378027 3379352 D PFAM: Glycosyltransferase 28 domain; KEGG: mbb:BCG_2983c putative glycosyl transferase; Glycosyltransferase 28 domain-containing protein 3378027..3379352 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405083 YP_003168131.1 CDS CAP2UW1_2923 NC_013194.1 3379709 3380503 D PFAM: protein of unknown function DUF1555; KEGG: ter:Tery_4367 hypothetical protein; hypothetical protein 3379709..3380503 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405084 YP_003168132.1 CDS CAP2UW1_2924 NC_013194.1 3381089 3381742 D KEGG: noc:Noc_1989 putative glycan acetyltransferase; hypothetical protein 3381089..3381742 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405085 YP_003168133.1 CDS CAP2UW1_2925 NC_013194.1 3382028 3382672 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: npu:Npun_F3369 methyltransferase type 12; type 11 methyltransferase 3382028..3382672 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405086 YP_003168134.1 CDS CAP2UW1_2927 NC_013194.1 3383752 3384210 D PFAM: small multidrug resistance protein; KEGG: xau:Xaut_3102 small multidrug resistance protein; small multidrug resistance protein 3383752..3384210 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405088 YP_003168135.1 CDS CAP2UW1_2928 NC_013194.1 3384224 3384556 D PFAM: small multidrug resistance protein; KEGG: bac:BamMC406_1481 small multidrug resistance protein; small multidrug resistance protein 3384224..3384556 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405089 YP_003168136.1 CDS CAP2UW1_2929 NC_013194.1 3384694 3385527 D hypothetical protein 3384694..3385527 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405090 YP_003168137.1 CDS CAP2UW1_2930 NC_013194.1 3385686 3386927 D PFAM: protein of unknown function DUF214; KEGG: nmu:Nmul_A0370 protein of unknown function DUF214; hypothetical protein 3385686..3386927 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405091 YP_003168138.1 CDS CAP2UW1_2931 NC_013194.1 3386958 3388169 D PFAM: protein of unknown function DUF214; KEGG: neu:NE2242 DUF214; hypothetical protein 3386958..3388169 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405092 YP_003168139.1 CDS CAP2UW1_2932 NC_013194.1 3388367 3389566 R PFAM: lipolytic protein G-D-S-L family; KEGG: nmu:Nmul_A1186 lipolytic enzyme, G-D-S-L; G-D-S-L family lipolytic protein complement(3388367..3389566) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405093 YP_003168140.1 CDS CAP2UW1_2933 NC_013194.1 3390089 3390403 R PFAM: plasmid stabilization system; KEGG: spe:Spro_4208 plasmid stabilization system; plasmid stabilization system complement(3390089..3390403) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405094 YP_003168141.1 CDS CAP2UW1_2934 NC_013194.1 3390403 3390711 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: oan:Oant_4547 prevent-host-death family protein; prevent-host-death family protein complement(3390403..3390711) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405095 YP_003168142.1 CDS mnmA NC_013194.1 3390875 3391975 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(3390875..3391975) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405096 YP_003168143.1 CDS CAP2UW1_2936 NC_013194.1 3391989 3392615 R KEGG: dar:Daro_3292 hypothetical protein; hypothetical protein complement(3391989..3392615) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405097 YP_003168144.1 CDS CAP2UW1_2937 NC_013194.1 3392612 3393061 R PFAM: NUDIX hydrolase; KEGG: dar:Daro_3293 NUDIX hydrolase; NUDIX hydrolase complement(3392612..3393061) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405098 YP_003168145.1 CDS CAP2UW1_2938 NC_013194.1 3393168 3394088 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: nmu:Nmul_A1060 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 3393168..3394088 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405099 YP_003168146.1 CDS CAP2UW1_2939 NC_013194.1 3394111 3394308 D KEGG: dar:Daro_3295 hypothetical protein; hypothetical protein 3394111..3394308 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405100 YP_003168147.1 CDS CAP2UW1_2940 NC_013194.1 3394367 3395383 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dar:Daro_3296 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II 3394367..3395383 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405101 YP_003168148.1 CDS CAP2UW1_2941 NC_013194.1 3395380 3395829 D KEGG: dar:Daro_3297 hypothetical protein; hypothetical protein 3395380..3395829 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405102 YP_003168149.1 CDS CAP2UW1_2942 NC_013194.1 3395826 3396797 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_3298 esterase/lipase/thioesterase family active site; alpha/beta hydrolase fold protein 3395826..3396797 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405103 YP_003168150.1 CDS CAP2UW1_2943 NC_013194.1 3396799 3398178 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: dar:Daro_3299 phosphomannomutase; phosphomannomutase 3396799..3398178 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405104 YP_003168151.1 CDS CAP2UW1_2944 NC_013194.1 3398222 3399475 D PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_3300 EAL; putative signal transduction protein 3398222..3399475 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405105 YP_003168152.1 CDS CAP2UW1_2945 NC_013194.1 3399713 3400189 D hypothetical protein 3399713..3400189 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405106 YP_003168153.1 CDS CAP2UW1_2946 NC_013194.1 3400186 3403149 D PFAM: N-6 DNA methylase; KEGG: hch:HCH_07036 type I restriction-modification system methyltransferase subunit; N-6 DNA methylase 3400186..3403149 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405107 YP_003168154.1 CDS CAP2UW1_2947 NC_013194.1 3403146 3403823 D KEGG: fps:FP0028 hypothetical protein; hypothetical protein 3403146..3403823 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405108 YP_003168155.1 CDS CAP2UW1_2948 NC_013194.1 3404143 3405312 R PFAM: VWA containing CoxE family protein; KEGG: azo:azo1429 hypothetical protein; VWA containing CoxE family protein complement(3404143..3405312) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405109 YP_003168156.1 CDS CAP2UW1_2949 NC_013194.1 3405333 3406175 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: azo:azo1431 hypothetical protein; AAA ATPase central domain-containing protein complement(3405333..3406175) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405110 YP_003168157.1 CDS CAP2UW1_2950 NC_013194.1 3406280 3406555 D hypothetical protein 3406280..3406555 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405111 YP_003168158.1 CDS CAP2UW1_2951 NC_013194.1 3406611 3407039 R PFAM: Domain of unknown function DUF1841; KEGG: dar:Daro_1153 hypothetical protein; hypothetical protein complement(3406611..3407039) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405112 YP_003168159.1 CDS CAP2UW1_2952 NC_013194.1 3407020 3408147 R KEGG: dar:Daro_1154 hypothetical protein; hypothetical protein complement(3407020..3408147) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405113 YP_003168160.1 CDS CAP2UW1_2953 NC_013194.1 3408144 3408830 R KEGG: bbr:BB3785 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III complement(3408144..3408830) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405114 YP_003168161.1 CDS CAP2UW1_2954 NC_013194.1 3408823 3409521 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit complement(3408823..3409521) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405115 YP_003168162.1 CDS CAP2UW1_2955 NC_013194.1 3409518 3410189 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: dar:Daro_1159 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G complement(3409518..3410189) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405116 YP_003168163.1 CDS CAP2UW1_2956 NC_013194.1 3410186 3411211 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dar:Daro_1160 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D complement(3410186..3411211) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405117 YP_003168164.1 CDS CAP2UW1_2957 NC_013194.1 3411208 3412959 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(3411208..3412959) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405118 YP_003168165.1 CDS CAP2UW1_2958 NC_013194.1 3412970 3413512 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB complement(3412970..3413512) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405119 YP_003168166.1 CDS CAP2UW1_2959 NC_013194.1 3413509 3414093 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: dar:Daro_1163 electron transport complex, RnfABCDGE type, A subunit; RnfABCDGE type electron transport complex subunit A complement(3413509..3414093) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405120 YP_003168167.1 CDS CAP2UW1_2960 NC_013194.1 3414182 3415234 R PFAM: dihydroorotate dehydrogenase; KEGG: dar:Daro_1164 dihydroorotate oxidase A; dihydroorotate oxidase complement(3414182..3415234) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405121 YP_003168168.1 CDS CAP2UW1_2961 NC_013194.1 3415411 3415836 R KEGG: bja:bll7553 hypothetical protein; hypothetical protein complement(3415411..3415836) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405122 YP_003168169.1 CDS CAP2UW1_2962 NC_013194.1 3416064 3416888 D KEGG: reu:Reut_A0931 probable signal peptide protein; putative signal peptide protein 3416064..3416888 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405123 YP_003168170.1 CDS CAP2UW1_2963 NC_013194.1 3416896 3417588 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mms:mma_1964 ABC-type tungstate transport system, periplasmic component; binding-protein-dependent transport systems inner membrane component 3416896..3417588 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405124 YP_003168171.1 CDS CAP2UW1_2964 NC_013194.1 3417585 3418250 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: har:HEAR1420 putative ATP-binding ABC transporter protein; ABC transporter 3417585..3418250 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405125 YP_003168172.1 CDS CAP2UW1_2965 NC_013194.1 3418312 3419217 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: dar:Daro_2450 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(3418312..3419217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405126 YP_003168173.1 CDS rbfA NC_013194.1 3419219 3419629 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(3419219..3419629) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405127 YP_003168174.1 CDS CAP2UW1_2967 NC_013194.1 3419630 3422461 R TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; Miro domain protein; KEGG: dar:Daro_2452 translation initiation factor IF-2; translation initiation factor IF-2 complement(3419630..3422461) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405128 YP_003168175.1 CDS nusA NC_013194.1 3422481 3423953 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(3422481..3423953) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405129 YP_003168176.1 CDS CAP2UW1_2969 NC_013194.1 3423968 3424435 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(3423968..3424435) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405130 YP_003168177.1 CDS CAP2UW1_2970 NC_013194.1 3424575 3425543 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: azo:azo2110 pseudouridylate synthase; RNA-binding S4 domain-containing protein complement(3424575..3425543) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405131 YP_003168178.1 CDS CAP2UW1_2971 NC_013194.1 3425530 3426120 R TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: dar:Daro_2456 condensin subunit ScpB; chromosome segregation and condensation protein ScpB complement(3425530..3426120) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405132 YP_003168179.1 CDS CAP2UW1_2972 NC_013194.1 3426083 3426943 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: dar:Daro_2457 condensin subunit ScpA; chromosome segregation and condensation protein ScpA complement(3426083..3426943) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405133 YP_003168180.1 CDS CAP2UW1_2973 NC_013194.1 3426963 3428165 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3426963..3428165) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405134 YP_003168181.1 CDS CAP2UW1_2974 NC_013194.1 3428183 3428836 R PFAM: peptidase M50; KEGG: dar:Daro_2460 peptidase M50; peptidase M50 complement(3428183..3428836) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405135 YP_003168182.1 CDS CAP2UW1_2975 NC_013194.1 3428847 3429473 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dar:Daro_2461 SUA5/YciO/YrdC/YwlC; Sua5/YciO/YrdC/YwlC family protein complement(3428847..3429473) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405136 YP_003168183.1 CDS CAP2UW1_2976 NC_013194.1 3429489 3430355 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dar:Daro_2462 PHP, C-terminal; PHP domain-containing protein complement(3429489..3430355) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405137 YP_003168184.1 CDS CAP2UW1_2977 NC_013194.1 3430589 3431230 D PFAM: Negative transcriptional regulator; KEGG: pau:PA14_09790 putative transcriptional regulator; FMN-binding negative transcriptional regulator 3430589..3431230 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405138 YP_003168185.1 CDS CAP2UW1_2978 NC_013194.1 3431230 3432078 D PFAM: putative RNA methylase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0172 methyltransferase type 11; type 11 methyltransferase 3431230..3432078 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405139 YP_003168186.1 CDS CAP2UW1_2979 NC_013194.1 3432075 3432920 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sgl:SG1583 3-demethylubiquinone-9 3-methyltransferase; type 11 methyltransferase 3432075..3432920 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405140 YP_003168187.1 CDS CAP2UW1_2980 NC_013194.1 3433076 3434584 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_0544 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3433076..3434584) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405141 YP_003168188.1 CDS CAP2UW1_2981 NC_013194.1 3434551 3435282 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_0543 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(3434551..3435282) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405142 YP_003168189.1 CDS CAP2UW1_2982 NC_013194.1 3435350 3436159 R KEGG: ote:Oter_3778 hypothetical protein; hypothetical protein complement(3435350..3436159) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405143 YP_003168190.1 CDS CAP2UW1_2983 NC_013194.1 3436301 3437008 R KEGG: dar:Daro_1800 hypothetical protein; hypothetical protein complement(3436301..3437008) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405144 YP_003168191.1 CDS CAP2UW1_2984 NC_013194.1 3437037 3437699 R PFAM: protein of unknown function DUF583; KEGG: dar:Daro_1801 hypothetical protein; hypothetical protein complement(3437037..3437699) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405145 YP_003168192.1 CDS CAP2UW1_2985 NC_013194.1 3438220 3439629 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_1802 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; integral membrane sensor signal transduction histidine kinase 3438220..3439629 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405146 YP_003168193.1 CDS CAP2UW1_2986 NC_013194.1 3439657 3440217 D KEGG: dar:Daro_1803 hypothetical protein; hypothetical protein 3439657..3440217 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405147 YP_003168194.1 CDS CAP2UW1_2987 NC_013194.1 3440214 3441608 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_1804 two component, sigma54 specific, transcriptional regulator, Fis family; two component sigma-54 specific Fis family transcriptional regulator 3440214..3441608 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405148 YP_003168195.1 CDS CAP2UW1_2988 NC_013194.1 3441793 3441912 R hypothetical protein complement(3441793..3441912) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405149 YP_003168196.1 CDS CAP2UW1_2989 NC_013194.1 3441909 3442541 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsh:Rsph17029_3908 dimethylmenaquinone methyltransferase; Dimethylmenaquinone methyltransferase complement(3441909..3442541) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405150 YP_003168197.1 CDS CAP2UW1_2990 NC_013194.1 3442538 3443203 R PFAM: Dimethylmenaquinone methyltransferase; KEGG: rso:RS03177 putative transferase protein; Dimethylmenaquinone methyltransferase complement(3442538..3443203) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405151 YP_003168198.1 CDS CAP2UW1_2991 NC_013194.1 3443200 3443865 R KEGG: rso:RS03178 putative transferase protein; putative transferase protein complement(3443200..3443865) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405152 YP_003168199.1 CDS CAP2UW1_2992 NC_013194.1 3443973 3444881 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RS03179 probable transcription regulator protein; LysR family transcriptional regulator 3443973..3444881 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405153 YP_003168200.1 CDS hisI NC_013194.1 3445431 3445808 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 3445431..3445808 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405155 YP_003168201.1 CDS CAP2UW1_2995 NC_013194.1 3445805 3446569 D KEGG: glo:Glov_1119 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 3445805..3446569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405156 YP_003168202.1 CDS CAP2UW1_2996 NC_013194.1 3446621 3447055 D KEGG: psa:PST_0577 hypothetical protein; hypothetical protein 3446621..3447055 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405157 YP_003168203.1 CDS CAP2UW1_2997 NC_013194.1 3447061 3448089 R KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein complement(3447061..3448089) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405158 YP_003168204.1 CDS CAP2UW1_2998 NC_013194.1 3448398 3448943 R PFAM: protein of unknown function DUF820; KEGG: nis:NIS_1854 hypothetical protein; hypothetical protein complement(3448398..3448943) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405159 YP_003168205.1 CDS CAP2UW1_2999 NC_013194.1 3449109 3451496 R PFAM: SEC-C motif domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: gur:Gura_1863 sec-C motif domain protein; SEC-C motif domain-containing protein complement(3449109..3451496) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405160 YP_003168206.1 CDS CAP2UW1_3000 NC_013194.1 3451780 3453732 D KEGG: pna:Pnap_4385 hypothetical protein; hypothetical protein 3451780..3453732 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405161 YP_003168207.1 CDS CAP2UW1_3001 NC_013194.1 3453865 3454440 D PFAM: SNARE associated Golgi protein; KEGG: abo:ABO_0173 hypothetical protein; hypothetical protein 3453865..3454440 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405162 YP_003168208.1 CDS CAP2UW1_3002 NC_013194.1 3454769 3455008 D KEGG: bac:BamMC406_5515 hypothetical protein; hypothetical protein 3454769..3455008 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405163 YP_003168209.1 CDS CAP2UW1_3003 NC_013194.1 3455005 3457701 D PFAM: glycoside hydrolase family 31; KEGG: blj:BLD_1316 alpha-glucosidase; glycoside hydrolase family 31 3455005..3457701 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405164 YP_003168210.1 CDS CAP2UW1_3004 NC_013194.1 3457827 3458987 D PFAM: NnrS family protein; KEGG: eba:ebA4619 conserved hypothetical protein, predicted NnrS family involved in response to NO; NnrS family protein 3457827..3458987 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405165 YP_003168211.1 CDS CAP2UW1_3005 NC_013194.1 3459026 3460201 R PFAM: major facilitator superfamily MFS_1; KEGG: mpt:Mpe_A1313 hypothetical protein; major facilitator superfamily protein complement(3459026..3460201) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405166 YP_003168212.1 CDS CAP2UW1_3006 NC_013194.1 3460463 3460846 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gsu:GSU0172 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3460463..3460846) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405167 YP_003168213.1 CDS CAP2UW1_3007 NC_013194.1 3461110 3461949 R PFAM: cytochrome c assembly protein; KEGG: dar:Daro_0641 cytochrome c assembly protein; cytochrome c assembly protein complement(3461110..3461949) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405168 YP_003168214.1 CDS CAP2UW1_3008 NC_013194.1 3461980 3463335 D KEGG: dar:Daro_0642 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 3461980..3463335 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405169 YP_003168215.1 CDS CAP2UW1_3009 NC_013194.1 3463467 3464066 R PFAM: Lytic transglycosylase catalytic; KEGG: dar:Daro_0643 lytic transglycosylase, catalytic; lytic transglycosylase subunit complement(3463467..3464066) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405170 YP_003168216.1 CDS CAP2UW1_3010 NC_013194.1 3464054 3465778 R TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: dar:Daro_0644 prolyl-tRNA synthetase, bacterial; prolyl-tRNA synthetase complement(3464054..3465778) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405171 YP_003168217.1 CDS CAP2UW1_3011 NC_013194.1 3466194 3466742 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3466194..3466742 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405172 YP_003168218.1 CDS CAP2UW1_3012 NC_013194.1 3466739 3467314 D PFAM: Protein of unknown function CNP1-like; KEGG: dar:Daro_0646 putative lipoprotein; hypothetical protein 3466739..3467314 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405173 YP_003168219.1 CDS CAP2UW1_3013 NC_013194.1 3467354 3467977 D KEGG: azo:azo2762 ubiquinone biosynthesis protein; ubiquinone biosynthesis protein 3467354..3467977 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405174 YP_003168220.1 CDS CAP2UW1_3014 NC_013194.1 3468148 3468567 R PFAM: OsmC family protein; KEGG: dar:Daro_0648 OsmC-like protein; OsmC family protein complement(3468148..3468567) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405175 YP_003168221.1 CDS CAP2UW1_3015 NC_013194.1 3469219 3470544 R TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; Citrate transporter; KEGG: rfr:Rfer_3845 anaerobic C4-dicarboxylate membrane transporter family protein; anaerobic c4-dicarboxylate antiporter, Dcu family complement(3469219..3470544) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405176 YP_003168222.1 CDS aspA NC_013194.1 3470566 3471972 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(3470566..3471972) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405177 YP_003168223.1 CDS CAP2UW1_3017 NC_013194.1 3472800 3473399 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B0889 sigma-24 (FecI); ECF subfamily RNA polymerase sigma-24 subunit 3472800..3473399 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405178 YP_003168224.1 CDS CAP2UW1_3018 NC_013194.1 3473396 3474253 D KEGG: amr:AM1_2247 hypothetical protein; hypothetical protein 3473396..3474253 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405179 YP_003168225.1 CDS CAP2UW1_3019 NC_013194.1 3474250 3474774 D KEGG: reu:Reut_B5723 hypothetical protein; hypothetical protein 3474250..3474774 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405180 YP_003168226.1 CDS CAP2UW1_3020 NC_013194.1 3475139 3475693 D PFAM: OmpA/MotB domain protein; KEGG: lch:Lcho_4062 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3475139..3475693 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405181 YP_003168227.1 CDS CAP2UW1_3021 NC_013194.1 3475727 3477613 R SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: azo:azo3888 putative serine/threonine kinase; serine/threonine protein kinase complement(3475727..3477613) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405182 YP_003168228.1 CDS CAP2UW1_3022 NC_013194.1 3477692 3481396 R PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat; WD-40 repeat-containing protein complement(3477692..3481396) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405183 YP_003168229.1 CDS CAP2UW1_3023 NC_013194.1 3481400 3482776 R KEGG: dar:Daro_3600 TIR; hypothetical protein complement(3481400..3482776) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405184 YP_003168230.1 CDS CAP2UW1_3024 NC_013194.1 3483275 3483703 D PFAM: ribosomal protein L13; KEGG: dar:Daro_0649 50S ribosomal protein L13; 50S ribosomal protein L13 3483275..3483703 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405185 YP_003168231.1 CDS CAP2UW1_3025 NC_013194.1 3483713 3484105 D PFAM: ribosomal protein S9; KEGG: dar:Daro_0650 SSU ribosomal protein S9P; 30S ribosomal protein S9 3483713..3484105 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405186 YP_003168232.1 CDS argC NC_013194.1 3484199 3485227 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 3484199..3485227 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405187 YP_003168233.1 CDS CAP2UW1_3027 NC_013194.1 3485574 3485924 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 3485574..3485924 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405188 YP_003168234.1 CDS CAP2UW1_3028 NC_013194.1 3485925 3487094 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bvi:Bcep1808_0749 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 3485925..3487094 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405189 YP_003168235.1 CDS CAP2UW1_3029 NC_013194.1 3487345 3487785 R hypothetical protein complement(3487345..3487785) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405190 YP_003168236.1 CDS CAP2UW1_3030 NC_013194.1 3487922 3488860 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_6153 transcriptional regulator, LysR family; LysR family transcriptional regulator 3487922..3488860 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405191 YP_003168237.1 CDS CAP2UW1_3031 NC_013194.1 3488937 3489362 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: npu:Npun_F4088 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3488937..3489362 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405192 YP_003168238.1 CDS CAP2UW1_3032 NC_013194.1 3489674 3490438 R PFAM: class II aldolase/adducin family protein; KEGG: bch:Bcen2424_1340 hypothetical protein; class II aldolase/adducin family protein complement(3489674..3490438) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405193 YP_003168239.1 CDS CAP2UW1_3033 NC_013194.1 3490499 3491095 D PFAM: regulatory protein TetR; KEGG: mpa:MAP0155 hypothetical protein; TetR family transcriptional regulator 3490499..3491095 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405194 YP_003168240.1 CDS CAP2UW1_3034 NC_013194.1 3491151 3491606 R hypothetical protein complement(3491151..3491606) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405195 YP_003168241.1 CDS CAP2UW1_3035 NC_013194.1 3491618 3492016 R hypothetical protein complement(3491618..3492016) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405196 YP_003168242.1 CDS CAP2UW1_3036 NC_013194.1 3492021 3493190 R PFAM: protein of unknown function DUF482; KEGG: noc:Noc_1715 protein of unknown function DUF482; hypothetical protein complement(3492021..3493190) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405197 YP_003168243.1 CDS CAP2UW1_3037 NC_013194.1 3493229 3495937 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3493229..3495937) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405198 YP_003168244.1 CDS CAP2UW1_3038 NC_013194.1 3496225 3498138 D PFAM: peptidase M48 Ste24p; KEGG: ava:Ava_3197 Zn-dependent protease with chaperone function-like; peptidase M48 Ste24p 3496225..3498138 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405199 YP_003168245.1 CDS CAP2UW1_3041 NC_013194.1 3499373 3500983 R PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_2728 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(3499373..3500983) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405202 YP_003168246.1 CDS CAP2UW1_3042 NC_013194.1 3501258 3502694 D PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: swo:Swol_1403 putative signal transduction protein; adenylate/guanylate cyclase 3501258..3502694 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405203 YP_003168247.1 CDS CAP2UW1_3043 NC_013194.1 3503160 3505463 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: dar:Daro_1320 peptidoglycan-binding LysM:lytic transglycosylase, catalytic; lytic transglycosylase subunit 3503160..3505463 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405205 YP_003168248.1 CDS CAP2UW1_3044 NC_013194.1 3505592 3507619 R KEGG: dar:Daro_1319 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; peptide ABC transporter ATPase complement(3505592..3507619) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405206 YP_003168249.1 CDS CAP2UW1_3045 NC_013194.1 3507634 3509076 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1318 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3507634..3509076) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405207 YP_003168250.1 CDS CAP2UW1_3046 NC_013194.1 3509076 3510053 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1317 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3509076..3510053) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405208 YP_003168251.1 CDS CAP2UW1_3047 NC_013194.1 3510070 3512229 R PFAM: extracellular solute-binding protein family 5; KEGG: dar:Daro_1224 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(3510070..3512229) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405209 YP_003168252.1 CDS CAP2UW1_3048 NC_013194.1 3512403 3513203 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1935 enoyl-[acyl-carrier-protein] reductase [NADH]; short-chain dehydrogenase/reductase SDR 3512403..3513203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405210 YP_003168253.1 CDS CAP2UW1_3049 NC_013194.1 3513224 3513448 D hypothetical protein 3513224..3513448 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405211 YP_003168254.1 CDS CAP2UW1_3050 NC_013194.1 3513445 3515193 D KEGG: pol:Bpro_2832 hypothetical protein; hypothetical protein 3513445..3515193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405212 YP_003168255.1 CDS CAP2UW1_3052 NC_013194.1 3516536 3517576 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: azo:azo1320 putative AraC-family transcriptional regulator; AraC family transcriptional regulator 3516536..3517576 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405214 YP_003168256.1 CDS CAP2UW1_3053 NC_013194.1 3517691 3517996 D PFAM: protein of unknown function DUF1330; KEGG: rpc:RPC_0334 protein of unknown function DUF1330; hypothetical protein 3517691..3517996 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405215 YP_003168257.1 CDS CAP2UW1_3055 NC_013194.1 3520228 3520890 R PFAM: MT-A70 family protein; KEGG: ajs:Ajs_0426 MT-A70 family protein; MT-A70 family protein complement(3520228..3520890) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405217 YP_003168258.1 CDS CAP2UW1_3056 NC_013194.1 3520896 3521483 R PFAM: Restriction endonuclease BglII; KEGG: ajs:Ajs_0427 hypothetical protein; Restriction endonuclease BglII complement(3520896..3521483) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405218 YP_003168259.1 CDS cobS NC_013194.1 3521767 3522519 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 3521767..3522519 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405219 YP_003168260.1 CDS CAP2UW1_3058 NC_013194.1 3522504 3523061 D PFAM: Phosphoglycerate mutase; KEGG: dar:Daro_0151 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase 3522504..3523061 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405220 YP_003168261.1 CDS CAP2UW1_3059 NC_013194.1 3523096 3524010 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dar:Daro_0537 tyrosine recombinase XerD subunit; tyrosine recombinase XerD complement(3523096..3524010) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405221 YP_003168262.1 CDS CAP2UW1_3060 NC_013194.1 3523997 3524476 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dar:Daro_0538 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA/protein-cysteine methyltransferase complement(3523997..3524476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405222 YP_003168263.1 CDS CAP2UW1_3061 NC_013194.1 3524486 3525058 R KEGG: dar:Daro_1552 putative lipoprotein transmembrane; putative lipoprotein transmembrane complement(3524486..3525058) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405223 YP_003168264.1 CDS proA NC_013194.1 3525174 3526430 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3525174..3526430) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405224 YP_003168265.1 CDS CAP2UW1_3063 NC_013194.1 3526553 3526804 D KEGG: dar:Daro_0541 hypothetical protein; hypothetical protein 3526553..3526804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405225 YP_003168266.1 CDS holA NC_013194.1 3526836 3527840 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(3526836..3527840) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405226 YP_003168267.1 CDS CAP2UW1_3065 NC_013194.1 3527852 3528373 R PFAM: Rare lipoprotein B; KEGG: dar:Daro_0543 rare lipoprotein B; Rare lipoprotein B complement(3527852..3528373) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405227 YP_003168268.1 CDS leuS NC_013194.1 3528393 3531032 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(3528393..3531032) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405228 YP_003168269.1 CDS CAP2UW1_3067 NC_013194.1 3531151 3531948 R KEGG: sml:Smlt0344 hypothetical protein; hypothetical protein complement(3531151..3531948) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405229 YP_003168270.1 CDS CAP2UW1_3068 NC_013194.1 3532016 3532885 R KEGG: azo:azo0076 hypothetical protein; hypothetical protein complement(3532016..3532885) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405230 YP_003168271.1 CDS CAP2UW1_3069 NC_013194.1 3532882 3533472 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sml:Smlt2004 putative ECF-type RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit complement(3532882..3533472) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405231 YP_003168272.1 CDS CAP2UW1_3070 NC_013194.1 3533581 3534504 D PFAM: Sporulation domain protein; KEGG: wsu:WS1631 hypothetical protein; Sporulation domain-containing protein 3533581..3534504 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405232 YP_003168273.1 CDS CAP2UW1_3071 NC_013194.1 3534537 3534974 R KEGG: dar:Daro_0545 hypothetical protein; hypothetical protein complement(3534537..3534974) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405233 YP_003168274.1 CDS CAP2UW1_3072 NC_013194.1 3535368 3536387 D PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: net:Neut_1176 fructose-1,6-bisphosphatase; Inositol phosphatase/fructose-16-bisphosphatase 3535368..3536387 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405234 YP_003168275.1 CDS CAP2UW1_3073 NC_013194.1 3536580 3537167 R PFAM: protein of unknown function DUF1555; KEGG: cja:CJA_0864 PEP-Cterm putative exosortase interaction domain protein; hypothetical protein complement(3536580..3537167) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405235 YP_003168276.1 CDS CAP2UW1_3074 NC_013194.1 3537401 3538180 R KEGG: gur:Gura_2760 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase subunit complement(3537401..3538180) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405236 YP_003168277.1 CDS CAP2UW1_3075 NC_013194.1 3538177 3538986 R TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gur:Gura_2761 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt ABC transporter inner membrane subunit CbiQ complement(3538177..3538986) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405237 YP_003168278.1 CDS CAP2UW1_3076 NC_013194.1 3539043 3540101 R PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: gur:Gura_0780 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis CbiM protein complement(3539043..3540101) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405238 YP_003168279.1 CDS CAP2UW1_3077 NC_013194.1 3540153 3541466 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; (Uracil-5)-methyltransferase; KEGG: dar:Daro_0851 23S rRNA (uracil-5-)-methyltransferase; TrmA family RNA methyltransferase complement(3540153..3541466) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405239 YP_003168280.1 CDS CAP2UW1_3078 NC_013194.1 3541631 3542821 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: dar:Daro_3764 cation efflux protein; cation diffusion facilitator family transporter complement(3541631..3542821) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405240 YP_003168281.1 CDS CAP2UW1_3079 NC_013194.1 3543033 3546044 R KEGG: dar:Daro_3870 SNF2-related:helicase, C-terminal:SWIM Zn-finger; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase complement(3543033..3546044) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405241 YP_003168282.1 CDS CAP2UW1_3080 NC_013194.1 3546273 3546767 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(3546273..3546767) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405242 YP_003168283.1 CDS CAP2UW1_3081 NC_013194.1 3546843 3547154 R PFAM: protein of unknown function DUF1255; KEGG: dar:Daro_3029 protein of unknown function DUF1255; hypothetical protein complement(3546843..3547154) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405243 YP_003168284.1 CDS CAP2UW1_3082 NC_013194.1 3547157 3547366 R KEGG: dar:Daro_3030 hypothetical protein; hypothetical protein complement(3547157..3547366) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405244 YP_003168285.1 CDS CAP2UW1_3083 NC_013194.1 3547385 3548614 R PFAM: argininosuccinate synthase; KEGG: tbd:Tbd_1849 argininosuccinate synthase; Argininosuccinate synthase complement(3547385..3548614) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405245 YP_003168286.1 CDS CAP2UW1_3084 NC_013194.1 3548638 3549612 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(3548638..3549612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405246 YP_003168287.1 CDS CAP2UW1_3085 NC_013194.1 3549622 3550797 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(3549622..3550797) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405247 YP_003168288.1 CDS CAP2UW1_3086 NC_013194.1 3551055 3551873 R PFAM: protein of unknown function DUF323; KEGG: ter:Tery_4351 serine/threonine protein kinase; hypothetical protein complement(3551055..3551873) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405248 YP_003168289.1 CDS CAP2UW1_3087 NC_013194.1 3551870 3552517 R hypothetical protein complement(3551870..3552517) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405249 YP_003168290.1 CDS CAP2UW1_3088 NC_013194.1 3552517 3553041 R KEGG: ppd:Ppro_1855 protein of unknown function DUF1568; hypothetical protein complement(3552517..3553041) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405250 YP_003168291.1 CDS CAP2UW1_3089 NC_013194.1 3553095 3554126 R KEGG: cch:Cag_1695 reverse transcriptase family protein; reverse transcriptase family protein complement(3553095..3554126) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405251 YP_003168292.1 CDS CAP2UW1_3090 NC_013194.1 3554123 3554614 R PFAM: HRDC domain protein; KEGG: tde:TDE2267 HRDC domain protein; HRDC domain-containing protein complement(3554123..3554614) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405252 YP_003168293.1 CDS CAP2UW1_3091 NC_013194.1 3554658 3557486 R PFAM: protein of unknown function DUF323; KEGG: ter:Tery_2415 protein of unknown function DUF323; hypothetical protein complement(3554658..3557486) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405253 YP_003168294.1 CDS CAP2UW1_3092 NC_013194.1 3557483 3558499 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: scl:sce2278 hypothetical protein; ATPase complement(3557483..3558499) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405254 YP_003168295.1 CDS CAP2UW1_3093 NC_013194.1 3558667 3560007 R KEGG: rba:RB10221 conserved hypothetical protein-putative disease resistance protein; hypothetical protein complement(3558667..3560007) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405255 YP_003168296.1 CDS CAP2UW1_3094 NC_013194.1 3560009 3560734 R KEGG: dar:Daro_1795 hypothetical protein; hypothetical protein complement(3560009..3560734) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405256 YP_003168297.1 CDS CAP2UW1_3095 NC_013194.1 3560781 3562181 R PFAM: LmbE family protein; KEGG: pmy:Pmen_0596 LmbE family protein; LmbE family protein complement(3560781..3562181) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405257 YP_003168298.1 CDS CAP2UW1_3096 NC_013194.1 3562239 3563135 R PFAM: Mig-14 family protein; KEGG: pmy:Pmen_0595 Mig-14 family protein; Mig-14 family protein complement(3562239..3563135) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405258 YP_003168299.1 CDS CAP2UW1_3097 NC_013194.1 3563509 3564417 D PFAM: glycosyl transferase family 2; KEGG: eba:ebA3985 glycosyl transferase; family 2 glycosyl transferase 3563509..3564417 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405259 YP_003168300.1 CDS CAP2UW1_3098 NC_013194.1 3564454 3565902 D KEGG: abo:ABO_2293 hypothetical protein; hypothetical protein 3564454..3565902 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405260 YP_003168301.1 CDS CAP2UW1_3099 NC_013194.1 3565953 3566408 R PFAM: protein of unknown function DUF82; KEGG: met:M446_3160 protein of unknown function DUF82; hypothetical protein complement(3565953..3566408) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405261 YP_003168302.1 CDS CAP2UW1_3100 NC_013194.1 3566453 3567574 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rme:Rmet_5363 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(3566453..3567574) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405262 YP_003168303.1 CDS CAP2UW1_3101 NC_013194.1 3568173 3569429 D PFAM: metallophosphoesterase; KEGG: lch:Lcho_1563 metallophosphoesterase; metallophosphoesterase 3568173..3569429 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405263 YP_003168304.1 CDS CAP2UW1_3102 NC_013194.1 3569437 3572895 D KEGG: lch:Lcho_1564 hypothetical protein; hypothetical protein 3569437..3572895 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405264 YP_003168305.1 CDS CAP2UW1_3103 NC_013194.1 3573041 3573718 D PFAM: protein of unknown function DUF1345; KEGG: pne:Pnec_1397 protein of unknown function DUF1345; hypothetical protein 3573041..3573718 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405265 YP_003168306.1 CDS CAP2UW1_3104 NC_013194.1 3573770 3574759 R PFAM: protein of unknown function DUF323; KEGG: mms:mma_1908 hypothetical protein; hypothetical protein complement(3573770..3574759) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405266 YP_003168307.1 CDS CAP2UW1_3105 NC_013194.1 3574948 3576282 R KEGG: smd:Smed_1144 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(3574948..3576282) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405267 YP_003168308.1 CDS CAP2UW1_3106 NC_013194.1 3576312 3576482 R hypothetical protein complement(3576312..3576482) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405268 YP_003168309.1 CDS CAP2UW1_3107 NC_013194.1 3576544 3578355 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: hmo:HM1_0368 glycolate permease glca; L-lactate transport complement(3576544..3578355) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405269 YP_003168310.1 CDS CAP2UW1_3108 NC_013194.1 3578414 3581206 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: dar:Daro_1763 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; D-lactate dehydrogenase (cytochrome) complement(3578414..3581206) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405270 YP_003168311.1 CDS CAP2UW1_3109 NC_013194.1 3581415 3582131 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_5900 transcriptional regulator, GntR family; GntR family transcriptional regulator 3581415..3582131 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405271 YP_003168312.1 CDS CAP2UW1_3110 NC_013194.1 3582143 3582331 R hypothetical protein complement(3582143..3582331) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405272 YP_003168313.1 CDS CAP2UW1_3111 NC_013194.1 3582499 3583233 R KEGG: dar:Daro_1569 cytochrome c, class I; cytochrome c, class I complement(3582499..3583233) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405273 YP_003168314.1 CDS CAP2UW1_3112 NC_013194.1 3583452 3584807 R PFAM: adenylosuccinate synthetase; KEGG: rha:RHA1_ro08616 adenylosuccinate synthetase; Adenylosuccinate synthase complement(3583452..3584807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405274 YP_003168315.1 CDS CAP2UW1_3113 NC_013194.1 3584844 3585821 R KEGG: rha:RHA1_ro08617 hypothetical protein; hypothetical protein complement(3584844..3585821) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405275 YP_003168316.1 CDS CAP2UW1_3114 NC_013194.1 3585831 3586808 R KEGG: rha:RHA1_ro08618 hypothetical protein; serine/threonine protein kinase complement(3585831..3586808) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405276 YP_003168317.1 CDS CAP2UW1_3115 NC_013194.1 3587177 3587593 D KEGG: sat:SYN_00017 superfamily II DNA/RNA helicase, SNF2 family; hypothetical protein 3587177..3587593 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405277 YP_003168318.1 CDS CAP2UW1_3117 NC_013194.1 3588401 3588586 R hypothetical protein complement(3588401..3588586) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405279 YP_003168319.1 CDS CAP2UW1_3118 NC_013194.1 3588791 3589081 D PFAM: histone family protein DNA-binding protein; KEGG: mms:mma_2667 integration host factor beta-subunit; histone family protein DNA-binding protein 3588791..3589081 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405280 YP_003168320.1 CDS CAP2UW1_3119 NC_013194.1 3589078 3590487 D PFAM: SEC-C motif domain protein; KEGG: vei:Veis_2451 sec-C motif domain protein; SEC-C motif domain-containing protein 3589078..3590487 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405281 YP_003168321.1 CDS CAP2UW1_3120 NC_013194.1 3590484 3590753 D hypothetical protein 3590484..3590753 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405282 YP_003168322.1 CDS CAP2UW1_3121 NC_013194.1 3590786 3591085 D KEGG: dar:Daro_2726 hypothetical protein; hypothetical protein 3590786..3591085 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405283 YP_003168323.1 CDS CAP2UW1_3122 NC_013194.1 3591398 3595192 R KEGG: cja:CJA_3648 hypothetical protein; hypothetical protein complement(3591398..3595192) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405284 YP_003168324.1 CDS CAP2UW1_3123 NC_013194.1 3595192 3596343 R KEGG: vvy:VV0267 type I restriction-modification enzyme, specificity subunit; type I restriction-modification enzyme, specificity subunit complement(3595192..3596343) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405285 YP_003168325.1 CDS CAP2UW1_3124 NC_013194.1 3596340 3597521 R PFAM: protein of unknown function DUF1016; KEGG: zmo:ZMO1931 hypothetical protein; hypothetical protein complement(3596340..3597521) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405286 YP_003168326.1 CDS CAP2UW1_3125 NC_013194.1 3597518 3599338 R PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: nwi:Nwi_0269 N-6 DNA methylase; N-6 DNA methylase complement(3597518..3599338) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405287 YP_003168327.1 CDS CAP2UW1_3126 NC_013194.1 3599353 3601764 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: bvi:Bcep1808_0274 EcoEI R, C-terminal domain protein; EcoEI R domain-containing protein complement(3599353..3601764) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405288 YP_003168328.1 CDS CAP2UW1_3127 NC_013194.1 3602302 3603585 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(3602302..3603585) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405290 YP_003168329.1 CDS CAP2UW1_3128 NC_013194.1 3603685 3605004 R PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dar:Daro_1298 recombination factor protein RarA; AAA ATPase central domain-containing protein complement(3603685..3605004) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405291 YP_003168330.1 CDS CAP2UW1_3129 NC_013194.1 3605347 3605553 D hypothetical protein 3605347..3605553 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405292 YP_003168331.1 CDS CAP2UW1_3130 NC_013194.1 3605781 3607178 R PFAM: protein of unknown function UPF0089; KEGG: rfr:Rfer_0505 protein of unknown function UPF0089; hypothetical protein complement(3605781..3607178) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405293 YP_003168332.1 CDS CAP2UW1_3131 NC_013194.1 3607549 3608016 D KEGG: asa:ASA_2032 poly(hydroxyalcanoate) granule associated protein; poly(hydroxyalcanoate) granule associated protein 3607549..3608016 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405294 YP_003168333.1 CDS CAP2UW1_3132 NC_013194.1 3608145 3609101 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: azo:azo3618 glycine cleavage system transcriptional activator; LysR family transcriptional regulator complement(3608145..3609101) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405295 YP_003168334.1 CDS CAP2UW1_3133 NC_013194.1 3609218 3609397 D hypothetical protein 3609218..3609397 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405296 YP_003168335.1 CDS CAP2UW1_3134 NC_013194.1 3609509 3609934 D KEGG: azo:azo3771 probable thioesterase; putative thioesterase 3609509..3609934 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405297 YP_003168336.1 CDS CAP2UW1_3135 NC_013194.1 3610013 3611476 R PFAM: CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: pol:Bpro_4152 putative signal-transduction protein with CBS domains; putative signal transduction protein with CBS domains complement(3610013..3611476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405298 YP_003168337.1 CDS CAP2UW1_3136 NC_013194.1 3611457 3613646 R KEGG: azo:azo2410 DNA polymerase III epsilon chain-like protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(3611457..3613646) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405299 YP_003168338.1 CDS CAP2UW1_3137 NC_013194.1 3613650 3614018 R PFAM: response regulator receiver; KEGG: azo:azo2411 transcriptional regulatory protein; response regulator receiver protein complement(3613650..3614018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405300 YP_003168339.1 CDS CAP2UW1_3138 NC_013194.1 3614054 3616810 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(3614054..3616810) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405301 YP_003168340.1 CDS CAP2UW1_3139 NC_013194.1 3616820 3617020 R KEGG: azo:azo2413 hypothetical protein; hypothetical protein complement(3616820..3617020) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405302 YP_003168341.1 CDS CAP2UW1_3140 NC_013194.1 3617146 3617985 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 3617146..3617985 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405303 YP_003168342.1 CDS CAP2UW1_3141 NC_013194.1 3618077 3619186 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dar:Daro_1615 mandelate racemase/muconate lactonizing enzyme; Mandelate racemase/muconate lactonizing protein 3618077..3619186 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405304 YP_003168343.1 CDS CAP2UW1_3142 NC_013194.1 3619375 3621489 D PFAM: UvrD/REP helicase; KEGG: azo:azo0345 ATP-dependent DNA helicase; UvrD/REP helicase 3619375..3621489 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405305 YP_003168344.1 CDS CAP2UW1_3143 NC_013194.1 3621825 3623174 R PFAM: ABC-1 domain protein; KEGG: dar:Daro_1130 ABC-1; ABC transporter complement(3621825..3623174) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405306 YP_003168345.1 CDS CAP2UW1_3144 NC_013194.1 3623247 3623591 R KEGG: dar:Daro_1131 hypothetical protein; hypothetical protein complement(3623247..3623591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405307 YP_003168346.1 CDS CAP2UW1_3145 NC_013194.1 3623624 3624082 R KEGG: psb:Psyr_2639 hypothetical protein; hypothetical protein complement(3623624..3624082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405308 YP_003168347.1 CDS CAP2UW1_3146 NC_013194.1 3624089 3624829 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmu:Bmul_5842 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3624089..3624829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405309 YP_003168348.1 CDS CAP2UW1_3147 NC_013194.1 3625000 3625287 D PFAM: conserved hypothetical protein; KEGG: pne:Pnec_0597 hypothetical protein; hypothetical protein 3625000..3625287 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405310 YP_003168349.1 CDS CAP2UW1_3148 NC_013194.1 3625328 3626338 D KEGG: bmu:Bmul_5843 FAD dependent oxidoreductase; FAD dependent oxidoreductase 3625328..3626338 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405311 YP_003168350.1 CDS CAP2UW1_3149 NC_013194.1 3626463 3628001 D PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: cvi:CV_3229 hypothetical protein; deoxyribodipyrimidine photolyase-like protein 3626463..3628001 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405312 YP_003168351.1 CDS CAP2UW1_3150 NC_013194.1 3628081 3629490 D PFAM: Excinuclease ABC C subunit domain protein; Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tbd:Tbd_0827 DNA polymerase III, epsilon subunit; Exonuclease RNase T and DNA polymerase III 3628081..3629490 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405313 YP_003168352.1 CDS CAP2UW1_3151 NC_013194.1 3629526 3629765 R hypothetical protein complement(3629526..3629765) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405314 YP_003168353.1 CDS CAP2UW1_3152 NC_013194.1 3630295 3631650 R PFAM: cell wall hydrolase/autolysin; KEGG: dar:Daro_3049 cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase complement(3630295..3631650) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405316 YP_003168354.1 CDS CAP2UW1_3153 NC_013194.1 3631605 3632003 R PFAM: protein of unknown function UPF0079; KEGG: dar:Daro_3050 hypothetical protein; hypothetical protein complement(3631605..3632003) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405317 YP_003168355.1 CDS CAP2UW1_3154 NC_013194.1 3632091 3633251 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: azo:azo1245 conserved hypothetical electron transport protein; iron-sulfur cluster-binding protein 3632091..3633251 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405318 YP_003168356.1 CDS CAP2UW1_3155 NC_013194.1 3633327 3634967 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: hch:HCH_03954 dehydrogenase; Electron-transferring-flavoprotein dehydrogenase complement(3633327..3634967) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405319 YP_003168357.1 CDS CAP2UW1_3156 NC_013194.1 3635337 3636560 R PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein; transposase family protein complement(3635337..3636560) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405320 YP_003168358.1 CDS CAP2UW1_3157 NC_013194.1 3637172 3637792 D KEGG: bpt:Bpet3757 hypothetical protein; hypothetical protein 3637172..3637792 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405321 YP_003168359.1 CDS CAP2UW1_3158 NC_013194.1 3637890 3639332 D PFAM: Integrase catalytic region; KEGG: bpt:Bpet3758 putative transposase; integrase catalytic subunit 3637890..3639332 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405322 YP_003168360.1 CDS CAP2UW1_3159 NC_013194.1 3639329 3640174 D SMART: AAA ATPase; KEGG: bxe:Bxe_C0709 putative ATPase; AAA ATPase 3639329..3640174 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405323 YP_003168361.1 CDS CAP2UW1_3160 NC_013194.1 3640332 3640598 D hypothetical protein 3640332..3640598 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405324 YP_003168362.1 CDS CAP2UW1_3161 NC_013194.1 3641424 3642521 D PFAM: von Willebrand factor type A; KEGG: dsh:Dshi_1335 hypothetical protein; von Willebrand factor type A 3641424..3642521 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405325 YP_003168363.1 CDS CAP2UW1_3162 NC_013194.1 3642661 3643170 R KEGG: eba:p2A279 transposase; transposase complement(3642661..3643170) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405326 YP_003168364.1 CDS CAP2UW1_3163 NC_013194.1 3643302 3644330 D KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein 3643302..3644330 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405327 YP_003168365.1 CDS CAP2UW1_3164 NC_013194.1 3644336 3644770 R KEGG: psa:PST_0577 hypothetical protein; hypothetical protein complement(3644336..3644770) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405328 YP_003168366.1 CDS CAP2UW1_3165 NC_013194.1 3644776 3644895 D hypothetical protein 3644776..3644895 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405329 YP_003168367.1 CDS CAP2UW1_3166 NC_013194.1 3644933 3646258 D KEGG: ppr:PBPRB1996 hypothetical protein; hypothetical protein 3644933..3646258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405330 YP_003168368.1 CDS CAP2UW1_3167 NC_013194.1 3646248 3647129 D KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein 3646248..3647129 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405331 YP_003168369.1 CDS CAP2UW1_3168 NC_013194.1 3647341 3647643 R hypothetical protein complement(3647341..3647643) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405332 YP_003168370.1 CDS CAP2UW1_3169 NC_013194.1 3647710 3647970 D KEGG: pin:Ping_1500 hypothetical protein DUF1555; hypothetical protein 3647710..3647970 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405333 YP_003168371.1 CDS CAP2UW1_3170 NC_013194.1 3648053 3649447 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: cti:RALTA_p0157 retron-type reverse transcriptase, RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(3648053..3649447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405334 YP_003168372.1 CDS CAP2UW1_3171 NC_013194.1 3649913 3651220 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: npu:Npun_R0666 TPR repeat-containing protein; TPR repeat-containing protein complement(3649913..3651220) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405335 YP_003168373.1 CDS CAP2UW1_3173 NC_013194.1 3651833 3652270 R PFAM: protein of unknown function DUF29; KEGG: plu:plu3933 hypothetical protein; hypothetical protein complement(3651833..3652270) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405337 YP_003168374.1 CDS CAP2UW1_3174 NC_013194.1 3652473 3654110 R PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_1006 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3652473..3654110) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405338 YP_003168375.1 CDS CAP2UW1_3175 NC_013194.1 3654246 3655106 R KEGG: chu:CHU_2450 hydrolase with alpha/beta fold; hydrolase with alpha/beta fold complement(3654246..3655106) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405339 YP_003168376.1 CDS CAP2UW1_3176 NC_013194.1 3655158 3655448 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: vha:VIBHAR_03061 hypothetical protein; Antibiotic biosynthesis monooxygenase complement(3655158..3655448) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405340 YP_003168377.1 CDS CAP2UW1_3177 NC_013194.1 3655583 3656407 R KEGG: npu:Npun_R4287 hypothetical protein; hypothetical protein complement(3655583..3656407) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405341 YP_003168378.1 CDS CAP2UW1_3178 NC_013194.1 3656697 3657152 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sus:Acid_5150 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein 3656697..3657152 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405342 YP_003168379.1 CDS CAP2UW1_3179 NC_013194.1 3657138 3657674 R PFAM: Dual specificity protein phosphatase; KEGG: psa:PST_2098 phosphatase family protein, putative; dual specificity protein phosphatase complement(3657138..3657674) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405343 YP_003168380.1 CDS CAP2UW1_3180 NC_013194.1 3657932 3658306 D PFAM: protein of unknown function UPF0153; KEGG: cvi:CV_2850 probable ferredoxin; hypothetical protein 3657932..3658306 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405344 YP_003168381.1 CDS CAP2UW1_3181 NC_013194.1 3658570 3659292 D KEGG: mca:MCA2831 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 3658570..3659292 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405345 YP_003168382.1 CDS CAP2UW1_3182 NC_013194.1 3659392 3660669 R PFAM: transposase IS4 family protein; KEGG: amt:Amet_1537 hypothetical protein; transposase IS4 family protein complement(3659392..3660669) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405346 YP_003168383.1 CDS CAP2UW1_3184 NC_013194.1 3661480 3663015 D PFAM: amino acid permease-associated region; KEGG: mca:MCA2830 amino acid permease family protein; amino acid permease-associated protein 3661480..3663015 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405348 YP_003168384.1 CDS CAP2UW1_3185 NC_013194.1 3663082 3664188 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mar:MAE_50030 poly(3-hydroxyalkanoate) synthase; poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit complement(3663082..3664188) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405349 YP_003168385.1 CDS CAP2UW1_3186 NC_013194.1 3664253 3665329 R KEGG: mar:MAE_50040 putative poly(3-hydroxyalkanoate) synthase component; hypothetical protein complement(3664253..3665329) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405350 YP_003168386.1 CDS CAP2UW1_3187 NC_013194.1 3665471 3665890 R PFAM: MaoC domain protein dehydratase; KEGG: reh:H16_A1288 acyl dehydratase; MaoC domain-containing protein dehydratase complement(3665471..3665890) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405351 YP_003168387.1 CDS CAP2UW1_3188 NC_013194.1 3665901 3666341 R PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro03006 hypothetical protein; MaoC domain-containing protein dehydratase complement(3665901..3666341) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405352 YP_003168388.1 CDS CAP2UW1_3189 NC_013194.1 3666400 3667581 R KEGG: cvi:CV_2088 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3666400..3667581) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405353 YP_003168389.1 CDS CAP2UW1_3190 NC_013194.1 3667640 3668407 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: azo:azo1338 short-chain dehydrogenase family protein; short-chain dehydrogenase/reductase SDR complement(3667640..3668407) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405354 YP_003168390.1 CDS CAP2UW1_3191 NC_013194.1 3669203 3670897 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase family protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 3669203..3670897 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405355 YP_003168391.1 CDS CAP2UW1_3192 NC_013194.1 3671046 3672599 R PFAM: AMP-dependent synthetase and ligase; KEGG: rca:Rcas_0414 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(3671046..3672599) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405356 YP_003168392.1 CDS CAP2UW1_3193 NC_013194.1 3673316 3674785 D hypothetical protein 3673316..3674785 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405357 YP_003168393.1 CDS CAP2UW1_3194 NC_013194.1 3675021 3675797 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo0790 enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase 3675021..3675797 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405358 YP_003168394.1 CDS CAP2UW1_3195 NC_013194.1 3675865 3678453 R TIGRFAM: esterase, PHB depolymerase family; KEGG: rpa:RPA0565 putative polyhydroxybutyrate depolymerase; esterase, PHB depolymerase family complement(3675865..3678453) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405359 YP_003168395.1 CDS CAP2UW1_3196 NC_013194.1 3678728 3679798 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 3678728..3679798 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405360 YP_003168396.1 CDS CAP2UW1_3197 NC_013194.1 3680017 3682086 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 3680017..3682086 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405361 YP_003168397.1 CDS CAP2UW1_3198 NC_013194.1 3682320 3682907 R KEGG: lic:LIC10946 hypothetical protein; hypothetical protein complement(3682320..3682907) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405362 YP_003168398.1 CDS CAP2UW1_3199 NC_013194.1 3683202 3683807 R KEGG: dar:Daro_1894 hypothetical protein; hypothetical protein complement(3683202..3683807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405363 YP_003168399.1 CDS CAP2UW1_3200 NC_013194.1 3683808 3684839 R PFAM: protein of unknown function DUF182; KEGG: dar:Daro_1893 protein of unknown function DUF182; hypothetical protein complement(3683808..3684839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405364 YP_003168400.1 CDS CAP2UW1_3201 NC_013194.1 3684842 3687037 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: dar:Daro_1892 twin-arginine translocation pathway signal; molybdopterin-binding aldehyde oxidase and xanthine dehydrogenase complement(3684842..3687037) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405365 YP_003168401.1 CDS CAP2UW1_3202 NC_013194.1 3687048 3687506 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dar:Daro_1891 ferredoxin:(2Fe-2S)-binding; (2Fe-2S)-binding domain-containing protein complement(3687048..3687506) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405366 YP_003168402.1 CDS CAP2UW1_3203 NC_013194.1 3687520 3688032 R PFAM: protein of unknown function UPF0153; KEGG: dar:Daro_1132 hypothetical protein; hypothetical protein complement(3687520..3688032) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405367 YP_003168403.1 CDS CAP2UW1_3204 NC_013194.1 3688147 3689091 R PFAM: aldo/keto reductase; KEGG: bbr:BB2876 hypothetical protein; aldo/keto reductase complement(3688147..3689091) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405368 YP_003168404.1 CDS CAP2UW1_3205 NC_013194.1 3689104 3690414 R PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0029 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3689104..3690414) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405369 YP_003168405.1 CDS CAP2UW1_3206 NC_013194.1 3690414 3691058 R PFAM: intradiol ring-cleavage dioxygenase; KEGG: pmy:Pmen_0474 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase complement(3690414..3691058) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405370 YP_003168406.1 CDS CAP2UW1_3207 NC_013194.1 3691260 3691754 D hypothetical protein 3691260..3691754 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405371 YP_003168407.1 CDS CAP2UW1_3208 NC_013194.1 3691756 3692358 R KEGG: gur:Gura_2107 hypothetical protein; hypothetical protein complement(3691756..3692358) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405372 YP_003168408.1 CDS CAP2UW1_3209 NC_013194.1 3692389 3692910 R KEGG: nmu:Nmul_A0869 proline-rich region; proline-rich region complement(3692389..3692910) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405373 YP_003168409.1 CDS CAP2UW1_3210 NC_013194.1 3693086 3693994 R TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: saq:Sare_3123 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(3693086..3693994) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405374 YP_003168410.1 CDS CAP2UW1_3211 NC_013194.1 3694090 3694695 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rsa:RSal33209_2927 transporter, LysE family; lysine exporter protein LysE/YggA 3694090..3694695 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405375 YP_003168411.1 CDS CAP2UW1_3212 NC_013194.1 3694706 3695167 R KEGG: swi:Swit_4655 hypothetical protein; hypothetical protein complement(3694706..3695167) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405376 YP_003168412.1 CDS CAP2UW1_3213 NC_013194.1 3695193 3695450 R PFAM: thiamineS protein; KEGG: reh:H16_B2249 hypothetical protein; sulfur transfer protein ThiS complement(3695193..3695450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405377 YP_003168413.1 CDS CAP2UW1_3214 NC_013194.1 3695463 3696659 R KEGG: reu:Reut_B4987 glycosyl hydrolase, BNR repeat; glycosyl hydrolase, BNR repeat-containing protein complement(3695463..3696659) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405378 YP_003168414.1 CDS CAP2UW1_3215 NC_013194.1 3696767 3699793 R KEGG: cch:Cag_1796 ankyrin; ankyrin complement(3696767..3699793) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405379 YP_003168415.1 CDS CAP2UW1_3216 NC_013194.1 3699832 3700440 R PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: eba:ebA6332 hypothetical protein; plasmid pRiA4b ORF-3 family protein complement(3699832..3700440) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405380 YP_003168416.1 CDS CAP2UW1_3217 NC_013194.1 3700437 3700613 R KEGG: cph:Cpha266_0939 DNA methylase N-4/N-6 domain protein; hypothetical protein complement(3700437..3700613) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405381 YP_003168417.1 CDS CAP2UW1_3218 NC_013194.1 3700813 3700941 D KEGG: xcb:XC_0495 two-component system sensor protein; hypothetical protein 3700813..3700941 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405382 YP_003168418.1 CDS CAP2UW1_3219 NC_013194.1 3700972 3701166 R KEGG: dar:Daro_4138 hypothetical protein; hypothetical protein complement(3700972..3701166) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405383 YP_003168419.1 CDS CAP2UW1_3220 NC_013194.1 3701393 3702316 D PFAM: putative exonuclease RdgC; KEGG: azo:azo0082 recombination associated protein; putative exonuclease RdgC 3701393..3702316 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405384 YP_003168420.1 CDS CAP2UW1_3221 NC_013194.1 3702810 3703346 R KEGG: rpd:RPD_3130 transposase and inactivated derivatives; transposase and inactivated derivatives complement(3702810..3703346) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405385 YP_003168421.1 CDS CAP2UW1_3222 NC_013194.1 3703529 3704704 R KEGG: lch:Lcho_0225 hypothetical protein; hypothetical protein complement(3703529..3704704) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405386 YP_003168422.1 CDS CAP2UW1_3223 NC_013194.1 3704701 3708069 R KEGG: sat:SYN_01817 hypothetical cytosolic protein; hypothetical protein complement(3704701..3708069) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405387 YP_003168423.1 CDS CAP2UW1_3224 NC_013194.1 3708062 3708667 R KEGG: lch:Lcho_0223 hypothetical protein; hypothetical protein complement(3708062..3708667) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405388 YP_003168424.1 CDS CAP2UW1_3225 NC_013194.1 3708708 3709268 R PFAM: protein of unknown function DUF820; KEGG: pna:Pnap_0294 protein of unknown function DUF820; hypothetical protein complement(3708708..3709268) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405389 YP_003168425.1 CDS CAP2UW1_3226 NC_013194.1 3709492 3710949 R KEGG: sat:SYN_01819 hypothetical cytosolic protein; hypothetical protein complement(3709492..3710949) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405390 YP_003168426.1 CDS CAP2UW1_3227 NC_013194.1 3710946 3711146 R hypothetical protein complement(3710946..3711146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405391 YP_003168427.1 CDS CAP2UW1_3228 NC_013194.1 3711143 3713269 R KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3711143..3713269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405392 YP_003168428.1 CDS CAP2UW1_3229 NC_013194.1 3713266 3715395 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0460 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; integral membrane sensor hybrid histidine kinase complement(3713266..3715395) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405393 YP_003168429.1 CDS CAP2UW1_3230 NC_013194.1 3715430 3716278 R KEGG: dar:Daro_0241 periplasmic binding protein-related protein; periplasmic-binding protein-like protein complement(3715430..3716278) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405394 YP_003168430.1 CDS CAP2UW1_3231 NC_013194.1 3716301 3717431 R KEGG: dar:Daro_2722 aminotransferase, class V; class V aminotransferase complement(3716301..3717431) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405395 YP_003168431.1 CDS CAP2UW1_3232 NC_013194.1 3717706 3718662 D PFAM: protein of unknown function DUF808; KEGG: dar:Daro_1869 protein of unknown function DUF808; hypothetical protein 3717706..3718662 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405396 YP_003168432.1 CDS CAP2UW1_3233 NC_013194.1 3718875 3721124 D PFAM: Glutathione S-transferase domain; KEGG: scl:sce3993 hypothetical protein; glutathione S-transferase domain-containing protein 3718875..3721124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405397 YP_003168433.1 CDS CAP2UW1_3234 NC_013194.1 3721264 3721959 R PFAM: protein of unknown function DUF1568; KEGG: gsu:GSU2396 hypothetical protein; hypothetical protein complement(3721264..3721959) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405398 YP_003168434.1 CDS CAP2UW1_3235 NC_013194.1 3722032 3722526 R KEGG: ape:APE_0276.1 hypothetical protein; hypothetical protein complement(3722032..3722526) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405399 YP_003168435.1 CDS CAP2UW1_3236 NC_013194.1 3722508 3722852 R hypothetical protein complement(3722508..3722852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405400 YP_003168436.1 CDS CAP2UW1_3238 NC_013194.1 3723515 3723976 R PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: eba:ebB182 conserved hypothetical protein, predicted nucleic acid-binding protein,contains PINc domain; PilT protein domain-containing protein complement(3723515..3723976) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405402 YP_003168437.1 CDS CAP2UW1_3239 NC_013194.1 3723949 3724221 R KEGG: eba:ebD91 hypothetical protein; hypothetical protein complement(3723949..3724221) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405403 YP_003168438.1 CDS CAP2UW1_3240 NC_013194.1 3724734 3728900 D PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Hemolysin-type calcium-binding region; Proprotein convertase P; KEGG: ana:all0364 similar to prohormone convertase; peptidase S8/S53 subtilisin kexin sedolisin 3724734..3728900 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405404 YP_003168439.1 CDS CAP2UW1_3241 NC_013194.1 3729002 3730585 D PFAM: transposase IS66; KEGG: mgm:Mmc1_3392 transposase IS66; transposase IS66 3729002..3730585 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405405 YP_003168440.1 CDS CAP2UW1_3242 NC_013194.1 3730798 3732033 R PFAM: glycosyl transferase group 1; KEGG: cvi:CV_4021 probable glycosyl transferase; group 1 glycosyl transferase complement(3730798..3732033) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405406 YP_003168441.1 CDS CAP2UW1_3243 NC_013194.1 3732035 3733699 R PFAM: Heparinase II/III family protein; KEGG: pau:PA14_23430 putative heparinase; Heparinase II/III family protein complement(3732035..3733699) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405407 YP_003168442.1 CDS CAP2UW1_3244 NC_013194.1 3733916 3736042 R PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rso:RS02345 probable transmembrane protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(3733916..3736042) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405408 YP_003168443.1 CDS CAP2UW1_3246 NC_013194.1 3737055 3738011 R KEGG: vha:VIBHAR_00695 hypothetical protein; hypothetical protein complement(3737055..3738011) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405410 YP_003168444.1 CDS CAP2UW1_3247 NC_013194.1 3738353 3740458 R KEGG: gme:Gmet_1500 hypothetical protein; hypothetical protein complement(3738353..3740458) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405411 YP_003168445.1 CDS CAP2UW1_3248 NC_013194.1 3740722 3741924 R PFAM: glycosyl transferase group 1; KEGG: nmu:Nmul_A0250 glycosyl transferase, group 1; group 1 glycosyl transferase complement(3740722..3741924) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405412 YP_003168446.1 CDS CAP2UW1_3249 NC_013194.1 3741918 3743177 R PFAM: O-antigen polymerase; KEGG: cti:RALTA_A0506 putative lipopolysaccharide biosynthesis protein; O-antigen polymerase complement(3741918..3743177) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405413 YP_003168447.1 CDS CAP2UW1_3250 NC_013194.1 3743174 3744454 R PFAM: virulence factor MVIN family protein; KEGG: mag:amb4409 uncharacterized membrane protein, putative virulence factor; virulence factor MVIN family protein complement(3743174..3744454) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405414 YP_003168448.1 CDS CAP2UW1_3251 NC_013194.1 3744454 3744741 R hypothetical protein complement(3744454..3744741) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405415 YP_003168449.1 CDS CAP2UW1_3252 NC_013194.1 3744983 3745291 R hypothetical protein complement(3744983..3745291) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405416 YP_003168450.1 CDS CAP2UW1_3254 NC_013194.1 3745509 3746576 R PFAM: FAD dependent oxidoreductase; KEGG: aba:Acid345_3314 FAD dependent oxidoreductase; Glycerol-3-phosphate oxidase complement(3745509..3746576) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405418 YP_003168451.1 CDS CAP2UW1_3257 NC_013194.1 3748037 3748774 D PFAM: Protein of unknown function DUF1626; KEGG: rrs:RoseRS_0534 protein of unknown function DUF1626; hypothetical protein 3748037..3748774 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405421 YP_003168452.1 CDS CAP2UW1_3258 NC_013194.1 3748975 3749784 D TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2705 squalene/phytoene synthase; squalene synthase HpnC 3748975..3749784 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405422 YP_003168453.1 CDS CAP2UW1_3259 NC_013194.1 3749837 3750670 D TIGRFAM: squalene synthase HpnD; PFAM: Squalene/phytoene synthase; KEGG: dar:Daro_2706 squalene/phytoene synthase; squalene synthase HpnD 3749837..3750670 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405423 YP_003168454.1 CDS CAP2UW1_3260 NC_013194.1 3750667 3751956 D TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: dar:Daro_2707 amine oxidase; squalene-associated FAD-dependent desaturase 3750667..3751956 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405424 YP_003168455.1 CDS CAP2UW1_3261 NC_013194.1 3751949 3752617 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_2713 ABC transporter related; ABC transporter complement(3751949..3752617) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405425 YP_003168456.1 CDS CAP2UW1_3262 NC_013194.1 3752634 3753251 D PFAM: lipolytic protein G-D-S-L family; KEGG: dar:Daro_2714 lipolytic enzyme, G-D-S-L; G-D-S-L family lipolytic protein 3752634..3753251 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405426 YP_003168457.1 CDS CAP2UW1_3263 NC_013194.1 3753281 3754333 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 3753281..3754333 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405427 YP_003168458.1 CDS CAP2UW1_3264 NC_013194.1 3754334 3754903 R KEGG: azo:azo1663 putative tellurite resistance protein; putative tellurite resistance protein complement(3754334..3754903) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405428 YP_003168459.1 CDS CAP2UW1_3265 NC_013194.1 3754930 3755394 D PFAM: OsmC family protein; KEGG: dar:Daro_2717 OsmC-like protein; OsmC family protein 3754930..3755394 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405429 YP_003168460.1 CDS CAP2UW1_3266 NC_013194.1 3755559 3758249 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: dar:Daro_2718 GCN5-related N-acetyltransferase:CoA-binding; CoA-binding domain-containing protein 3755559..3758249 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405430 YP_003168461.1 CDS CAP2UW1_3267 NC_013194.1 3758420 3758614 R KEGG: dar:Daro_2719 hypothetical protein; hypothetical protein complement(3758420..3758614) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405431 YP_003168462.1 CDS CAP2UW1_3268 NC_013194.1 3758731 3758964 R KEGG: mpt:Mpe_A3630 hypothetical protein; hypothetical protein complement(3758731..3758964) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405432 YP_003168463.1 CDS CAP2UW1_3269 NC_013194.1 3759091 3761670 R KEGG: dar:Daro_2727 AAA ATPase, central region:Clp, N terminal; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB complement(3759091..3761670) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405433 YP_003168464.1 CDS CAP2UW1_3270 NC_013194.1 3761929 3762381 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: dar:Daro_2729 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein complement(3761929..3762381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405434 YP_003168465.1 CDS CAP2UW1_3271 NC_013194.1 3762383 3762637 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: dar:Daro_1784 molybdopterin synthase subunit MoaD; molybdopterin converting factor subunit 1 complement(3762383..3762637) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405435 YP_003168466.1 CDS CAP2UW1_3272 NC_013194.1 3762647 3763852 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: reh:H16_A2264 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein complement(3762647..3763852) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405436 YP_003168467.1 CDS CAP2UW1_3273 NC_013194.1 3763839 3764381 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: dar:Daro_1782 molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B complement(3763839..3764381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405437 YP_003168468.1 CDS CAP2UW1_3274 NC_013194.1 3764378 3765712 R KEGG: eba:ebA6677 hypothetical protein; hypothetical protein complement(3764378..3765712) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405438 YP_003168469.1 CDS CAP2UW1_3275 NC_013194.1 3765718 3767682 R SMART: helicase c2; KEGG: dar:Daro_1779 helicase c2:DEAD/DEAH box helicase, N-terminal; helicase c2 complement(3765718..3767682) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405439 YP_003168470.1 CDS CAP2UW1_3276 NC_013194.1 3767836 3768612 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: dar:Daro_2442 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6 chymotrypsin/Hap complement(3767836..3768612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405440 YP_003168471.1 CDS CAP2UW1_3277 NC_013194.1 3768618 3769529 R PFAM: Sel1 domain protein repeat-containing protein; Lytic transglycosylase catalytic; KEGG: dar:Daro_2441 lytic transglycosylase, catalytic; lytic transglycosylase subunit complement(3768618..3769529) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405441 YP_003168472.1 CDS CAP2UW1_3278 NC_013194.1 3769526 3770596 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: tbd:Tbd_0099 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3769526..3770596) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405442 YP_003168473.1 CDS CAP2UW1_3279 NC_013194.1 3770584 3771864 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: dar:Daro_2440 UDP-glucose/GDP-mannose dehydrogenase:6-phosphogluconate dehydrogenase, NAD-binding; nucleotide sugar dehydrogenase complement(3770584..3771864) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405443 YP_003168474.1 CDS CAP2UW1_3280 NC_013194.1 3771919 3774708 R KEGG: dar:Daro_2439 TPR repeat:tetratricopeptide TPR_3:tetratricopeptide TPR_4; TIGRFAM: PEP-CTERM system TPR-repeat lipoprotein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; PEP-CTERM system TPR-repeat lipoprotein complement(3771919..3774708) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405444 YP_003168475.1 CDS CAP2UW1_3281 NC_013194.1 3774750 3776108 R KEGG: dar:Daro_2438 helix-turn-helix, fis-type; TIGRFAM: PEP-CTERM system response regulator; PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; two component sigma-54 specific Fis family transcriptional regulator complement(3774750..3776108) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405445 YP_003168476.1 CDS CAP2UW1_3282 NC_013194.1 3776105 3778219 R TIGRFAM: PEP-CTERM system histidine kinase; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_2437 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; multi-sensor signal transduction histidine kinase complement(3776105..3778219) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405446 YP_003168477.1 CDS CAP2UW1_3283 NC_013194.1 3778278 3779660 R KEGG: dar:Daro_2436 sugar transferase; TIGRFAM: sugar transferase, PEP-CTERM system associated; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; sugar transferase complement(3778278..3779660) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405447 YP_003168478.1 CDS CAP2UW1_3284 NC_013194.1 3779958 3781940 R KEGG: rfr:Rfer_0701 hypothetical protein; hypothetical protein complement(3779958..3781940) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405448 YP_003168479.1 CDS CAP2UW1_3285 NC_013194.1 3781990 3782217 R KEGG: azo:azo3680 hypothetical protein; hypothetical protein complement(3781990..3782217) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405449 YP_003168480.1 CDS CAP2UW1_3286 NC_013194.1 3782230 3783900 R PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: azo:azo3681 hypothetical protein; FAD-dependent oxidoreductase complement(3782230..3783900) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405450 YP_003168481.1 CDS CAP2UW1_3287 NC_013194.1 3783947 3784912 R PFAM: beta-lactamase domain protein; KEGG: bph:Bphy_4051 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(3783947..3784912) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405451 YP_003168482.1 CDS CAP2UW1_3288 NC_013194.1 3785204 3785650 D PFAM: protein of unknown function DUF107; KEGG: dar:Daro_0261 protein of unknown function DUF107; hypothetical protein 3785204..3785650 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405452 YP_003168483.1 CDS CAP2UW1_3289 NC_013194.1 3785647 3786513 D PFAM: band 7 protein; KEGG: azo:azo2269 conserved hypothetical band 7 family protein; hypothetical protein 3785647..3786513 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405453 YP_003168484.1 CDS CAP2UW1_3290 NC_013194.1 3786617 3786760 D hypothetical protein 3786617..3786760 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405454 YP_003168485.1 CDS CAP2UW1_3291 NC_013194.1 3786822 3788144 R KEGG: azo:azo1076 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(3786822..3788144) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405455 YP_003168486.1 CDS CAP2UW1_3292 NC_013194.1 3788178 3789101 R KEGG: cvi:CV_0745 hypothetical protein; hypothetical protein complement(3788178..3789101) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405456 YP_003168487.1 CDS CAP2UW1_3293 NC_013194.1 3789117 3790160 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: rme:Rmet_4592 hypothetical protein; NAD-dependent epimerase/dehydratase family protein complement(3789117..3790160) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405457 YP_003168488.1 CDS CAP2UW1_3294 NC_013194.1 3790166 3791095 R PFAM: formyl transferase domain protein; KEGG: bcm:Bcenmc03_1885 formyl transferase domain protein; formyl transferase domain-containing protein complement(3790166..3791095) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405458 YP_003168489.1 CDS CAP2UW1_3295 NC_013194.1 3791092 3792030 R PFAM: glycosyl transferase family 2; KEGG: bte:BTH_I2192 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(3791092..3792030) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405459 YP_003168490.1 CDS CAP2UW1_3296 NC_013194.1 3792034 3793146 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cvi:CV_0750 probable glutamine-scyllo-inositol transaminase; glutamine--scyllo-inositol transaminase complement(3792034..3793146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405460 YP_003168491.1 CDS CAP2UW1_3297 NC_013194.1 3793143 3793514 R KEGG: bmu:Bmul_1415 small multidrug resistance protein; small multidrug resistance protein complement(3793143..3793514) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405461 YP_003168492.1 CDS CAP2UW1_3298 NC_013194.1 3793516 3795255 R PFAM: glycosyl transferase family 39; KEGG: cvi:CV_0752 hypothetical protein; glycosyl transferase family 39 complement(3793516..3795255) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405462 YP_003168493.1 CDS CAP2UW1_3299 NC_013194.1 3795516 3796487 D KEGG: fma:FMG_0197 hypothetical protein; hypothetical protein 3795516..3796487 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405463 YP_003168494.1 CDS CAP2UW1_3300 NC_013194.1 3796742 3797401 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lch:Lcho_1866 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 3796742..3797401 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405464 YP_003168495.1 CDS CAP2UW1_3301 NC_013194.1 3797398 3798690 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lch:Lcho_1867 histidine kinase; integral membrane sensor signal transduction histidine kinase 3797398..3798690 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405465 YP_003168496.1 CDS CAP2UW1_3302 NC_013194.1 3798718 3800229 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dar:Daro_2379 hypothetical protein; carbohydrate kinase complement(3798718..3800229) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405466 YP_003168497.1 CDS CAP2UW1_3303 NC_013194.1 3800239 3801159 R PFAM: histone deacetylase superfamily; KEGG: azo:azo1601 histone deacetylase family protein; histone deacetylase superfamily complement(3800239..3801159) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405467 YP_003168498.1 CDS CAP2UW1_3304 NC_013194.1 3801277 3805290 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 3801277..3805290 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405468 YP_003168499.1 CDS CAP2UW1_3305 NC_013194.1 3805401 3806210 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dar:Daro_2906 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(3805401..3806210) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405469 YP_003168500.1 CDS CAP2UW1_3306 NC_013194.1 3806257 3806565 R PFAM: BolA family protein; KEGG: eba:ebD120 stress-induced morphogen BolA; BolA family protein complement(3806257..3806565) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405470 YP_003168501.1 CDS CAP2UW1_3307 NC_013194.1 3806562 3806867 R PFAM: YCII-related; KEGG: nmu:Nmul_A2112 YCII-related; YCII-like protein complement(3806562..3806867) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405471 YP_003168502.1 CDS CAP2UW1_3308 NC_013194.1 3806864 3807397 R TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: nmu:Nmul_A2111 intracellular septation protein A; intracellular septation protein A complement(3806864..3807397) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405472 YP_003168503.1 CDS CAP2UW1_3309 NC_013194.1 3807453 3807569 D hypothetical protein 3807453..3807569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405473 YP_003168504.1 CDS CAP2UW1_3310 NC_013194.1 3807759 3808241 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gsu:GSU3088 YbaK/EbsC protein; YbaK/prolyl-tRNA synthetase associated protein complement(3807759..3808241) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405474 YP_003168505.1 CDS CAP2UW1_3311 NC_013194.1 3808262 3808705 R PFAM: type IV pilus assembly PilZ; KEGG: lch:Lcho_1910 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(3808262..3808705) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405475 YP_003168506.1 CDS CAP2UW1_3312 NC_013194.1 3808728 3809534 R KEGG: psa:PST_0269 hypothetical protein; hypothetical protein complement(3808728..3809534) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405476 YP_003168507.1 CDS CAP2UW1_3313 NC_013194.1 3809531 3810547 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xcb:XC_2925 hypothetical protein; hypothetical protein complement(3809531..3810547) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405477 YP_003168508.1 CDS purT NC_013194.1 3810783 3811994 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(3810783..3811994) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405478 YP_003168509.1 CDS CAP2UW1_3315 NC_013194.1 3812082 3813095 R KEGG: bac:BamMC406_1460 putative ParB-like nuclease; hypothetical protein complement(3812082..3813095) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405479 YP_003168510.1 CDS CAP2UW1_3316 NC_013194.1 3813355 3814050 R KEGG: noc:Noc_2650 hypothetical protein; hypothetical protein complement(3813355..3814050) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405480 YP_003168511.1 CDS CAP2UW1_3317 NC_013194.1 3814655 3815512 R KEGG: sdn:Sden_1576 hypothetical protein; hypothetical protein complement(3814655..3815512) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405481 YP_003168512.1 CDS CAP2UW1_3318 NC_013194.1 3816304 3818850 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 3816304..3818850 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405482 YP_003168513.1 CDS CAP2UW1_3320 NC_013194.1 3819690 3820829 D PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4184 extracellular ligand-binding receptor; Extracellular ligand-binding receptor 3819690..3820829 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405484 YP_003168514.1 CDS CAP2UW1_3321 NC_013194.1 3820840 3822888 R PFAM: Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; KEGG: aba:Acid345_3029 small GTP-binding protein; nucleoside recognition domain-containing protein complement(3820840..3822888) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405485 YP_003168515.1 CDS CAP2UW1_3322 NC_013194.1 3823074 3823580 R KEGG: dar:Daro_2349 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(3823074..3823580) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405486 YP_003168516.1 CDS CAP2UW1_3323 NC_013194.1 3823577 3824047 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_2362 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(3823577..3824047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405487 YP_003168517.1 CDS CAP2UW1_3324 NC_013194.1 3824345 3824707 R PFAM: Septum formation initiator; KEGG: dar:Daro_2363 cell division protein FtsB; Septum formation initiator complement(3824345..3824707) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405488 YP_003168518.1 CDS eno NC_013194.1 3824725 3826008 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3824725..3826008) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405489 YP_003168519.1 CDS CAP2UW1_3326 NC_013194.1 3826071 3826907 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(3826071..3826907) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405490 YP_003168520.1 CDS pyrG NC_013194.1 3826904 3828547 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3826904..3828547) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405491 YP_003168521.1 CDS CAP2UW1_3328 NC_013194.1 3828660 3829202 R PFAM: isochorismatase hydrolase; KEGG: pmy:Pmen_3537 isochorismatase hydrolase; isochorismatase hydrolase complement(3828660..3829202) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405492 YP_003168522.1 CDS CAP2UW1_3329 NC_013194.1 3829311 3830369 R PFAM: transposase IS4 family protein; KEGG: dge:Dgeo_3112 transposase IS4 family protein; transposase IS4 family protein complement(3829311..3830369) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405493 YP_003168523.1 CDS CAP2UW1_3330 NC_013194.1 3830807 3831433 D PFAM: Ankyrin; KEGG: tva:TVAG_099270 ankyrin repeat protein, putative Pfam: VAR1 Ank PROSITE: ANK_REPEAT ANK_REP_REGION; Ankyrin 3830807..3831433 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405494 YP_003168524.1 CDS CAP2UW1_3331 NC_013194.1 3831524 3833200 R PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA4749 long chain fatty-acid CoA ligase; AMP-dependent synthetase and ligase complement(3831524..3833200) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405495 YP_003168525.1 CDS CAP2UW1_3332 NC_013194.1 3833367 3833690 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_0035 7Fe ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein complement(3833367..3833690) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405496 YP_003168526.1 CDS CAP2UW1_3333 NC_013194.1 3833880 3834206 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: dar:Daro_2997 thioredoxin; thioredoxin 3833880..3834206 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405497 YP_003168527.1 CDS CAP2UW1_3334 NC_013194.1 3834396 3835652 D KEGG: azo:azo1029 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho 3834396..3835652 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405498 YP_003168528.1 CDS rpmE NC_013194.1 3835844 3836059 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3835844..3836059 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405499 YP_003168529.1 CDS CAP2UW1_3336 NC_013194.1 3836161 3837813 D KEGG: dar:Daro_3000 hypothetical protein; hypothetical protein 3836161..3837813 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405500 YP_003168530.1 CDS CAP2UW1_3337 NC_013194.1 3837858 3838403 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: azo:azo1518 oligoribonuclease; Exonuclease RNase T and DNA polymerase III complement(3837858..3838403) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405501 YP_003168531.1 CDS CAP2UW1_3338 NC_013194.1 3838448 3839686 D PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_3002 peptidase M48, Ste24p; Ste24 endopeptidase 3838448..3839686 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405502 YP_003168532.1 CDS CAP2UW1_3339 NC_013194.1 3839710 3840051 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: xcv:XCV2428 pterin-4-alpha-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 3839710..3840051 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405503 YP_003168533.1 CDS CAP2UW1_3340 NC_013194.1 3840048 3840914 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 3840048..3840914 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405504 YP_003168534.1 CDS CAP2UW1_3341 NC_013194.1 3840933 3841211 D TIGRFAM: polyhydroxyalkanoic acid system protein; PFAM: Putative polyhydroxyalkanoic acid system protein; KEGG: maq:Maqu_3414 putative polyhydroxyalkanoic acid system protein; polyhydroxyalkanoic acid system protein 3840933..3841211 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405505 YP_003168535.1 CDS CAP2UW1_3342 NC_013194.1 3841245 3841505 R PFAM: acyl-coA-binding protein ACBP; KEGG: mpt:Mpe_A3085 putative acyl-CoA-binding protein; acyl-coA-binding protein ACBP complement(3841245..3841505) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405506 YP_003168536.1 CDS CAP2UW1_3343 NC_013194.1 3841585 3843078 D TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: protein of unknown function UPF0089; KEGG: asa:ASA_2036 hypothetical protein; WS/DGAT/MGAT acyltransferase 3841585..3843078 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405507 YP_003168537.1 CDS CAP2UW1_3344 NC_013194.1 3843144 3843917 R KEGG: asa:ASA_2035 hypothetical protein; hypothetical protein complement(3843144..3843917) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405508 YP_003168538.1 CDS CAP2UW1_3345 NC_013194.1 3843968 3844612 R PFAM: regulatory protein TetR; KEGG: bph:Bphy_2030 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3843968..3844612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405509 YP_003168539.1 CDS CAP2UW1_3346 NC_013194.1 3844711 3845928 R PFAM: Patatin; KEGG: asa:ASA_2033 phospholipase, patatin family; Patatin complement(3844711..3845928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405510 YP_003168540.1 CDS CAP2UW1_3347 NC_013194.1 3846178 3846747 R TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: asa:ASA_2032 poly(hydroxyalcanoate) granule associated protein; poly(hydroxyalkanoate) granule-associated protein complement(3846178..3846747) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405511 YP_003168541.1 CDS CAP2UW1_3348 NC_013194.1 3846928 3848913 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: mpt:Mpe_A0491 short chain dehydrogenase; short chain dehydrogenase 3846928..3848913 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405512 YP_003168542.1 CDS CAP2UW1_3349 NC_013194.1 3848933 3849352 D KEGG: mms:mma_3179 activator of osmoprotectant transporter ProP; activator of osmoprotectant transporter ProP 3848933..3849352 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405513 YP_003168543.1 CDS CAP2UW1_3350 NC_013194.1 3849380 3849940 D KEGG: dar:Daro_3460 hypothetical protein; hypothetical protein 3849380..3849940 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405514 YP_003168544.1 CDS CAP2UW1_3351 NC_013194.1 3849933 3850550 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: eba:ebA2945 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 3849933..3850550 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405515 YP_003168545.1 CDS CAP2UW1_3352 NC_013194.1 3850743 3851012 D PFAM: ribosomal protein S15; KEGG: tbd:Tbd_0694 SSU ribosomal protein S15P; 30S ribosomal protein S15 3850743..3851012 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405516 YP_003168546.1 CDS CAP2UW1_3353 NC_013194.1 3851199 3853319 D KEGG: dar:Daro_2448 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3851199..3853319 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405517 YP_003168547.1 CDS CAP2UW1_3354 NC_013194.1 3853429 3853854 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: dar:Daro_2447 Zn-finger, prokaryotic DksA/TraR C4 type; TraR/DksA family transcriptional regulator complement(3853429..3853854) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405518 YP_003168548.1 CDS CAP2UW1_3355 NC_013194.1 3854021 3854773 R PFAM: helix-turn-helix domain protein; KEGG: maq:Maqu_2492 hypothetical protein; helix-turn-helix domain-containing protein complement(3854021..3854773) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405519 YP_003168549.1 CDS CAP2UW1_3356 NC_013194.1 3855146 3855484 R KEGG: dar:Daro_1931 hypothetical protein; hypothetical protein complement(3855146..3855484) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405520 YP_003168550.1 CDS CAP2UW1_3357 NC_013194.1 3855639 3857057 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: dar:Daro_1932 transcriptional regulator, GntR family; GntR family transcriptional regulator 3855639..3857057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405521 YP_003168551.1 CDS CAP2UW1_3358 NC_013194.1 3857175 3858671 R SMART: AAA ATPase; KEGG: plu:plu2216 hypothetical protein; AAA ATPase complement(3857175..3858671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405522 YP_003168552.1 CDS CAP2UW1_3359 NC_013194.1 3859277 3859918 R KEGG: rru:Rru_A0987 glutathione S-transferase-like; glutathione S-transferase-like protein complement(3859277..3859918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405523 YP_003168553.1 CDS CAP2UW1_3360 NC_013194.1 3859972 3860298 R hypothetical protein complement(3859972..3860298) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405524 YP_003168554.1 CDS CAP2UW1_3361 NC_013194.1 3860418 3861356 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rso:RSc0325 probable transcription regulator protein; LysR family transcriptional regulator 3860418..3861356 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405525 YP_003168555.1 CDS CAP2UW1_3362 NC_013194.1 3861409 3863214 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related; ABC transporter complement(3861409..3863214) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405526 YP_003168556.1 CDS CAP2UW1_3363 NC_013194.1 3863265 3863660 R PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: pnu:Pnuc_1653 membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG) complement(3863265..3863660) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405527 YP_003168557.1 CDS CAP2UW1_3364 NC_013194.1 3863682 3864404 R PFAM: RDD domain containing protein; KEGG: hch:HCH_00261 predicted membrane protein/domain; RDD domain-containing protein complement(3863682..3864404) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405528 YP_003168558.1 CDS CAP2UW1_3365 NC_013194.1 3864401 3865165 R KEGG: dar:Daro_0167 putative transmembrane protein; hypothetical protein complement(3864401..3865165) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405529 YP_003168559.1 CDS CAP2UW1_3366 NC_013194.1 3865495 3865665 D hypothetical protein 3865495..3865665 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405530 YP_003168560.1 CDS CAP2UW1_3367 NC_013194.1 3865790 3867382 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_1662 diguanylate cyclase with PAS/PAC sensor; diguanylate cyclase complement(3865790..3867382) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405531 YP_003168561.1 CDS CAP2UW1_3368 NC_013194.1 3868051 3868302 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: pna:Pnap_3905 prevent-host-death family protein; prevent-host-death family protein 3868051..3868302 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405532 YP_003168562.1 CDS CAP2UW1_3369 NC_013194.1 3868299 3868553 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: pna:Pnap_3904 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin 3868299..3868553 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405533 YP_003168563.1 CDS CAP2UW1_3370 NC_013194.1 3868670 3869302 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cvi:CV_2839 probable transporter transmembrane protein; lysine exporter protein LysE/YggA complement(3868670..3869302) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405534 YP_003168564.1 CDS CAP2UW1_3372 NC_013194.1 3869550 3871685 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: hch:HCH_03463 Lhr-like helicase; DEAD/DEAH box helicase domain-containing protein complement(3869550..3871685) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405536 YP_003168565.1 CDS CAP2UW1_3373 NC_013194.1 3871682 3873001 R KEGG: pna:Pnap_4278 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis protein complement(3871682..3873001) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405537 YP_003168566.1 CDS CAP2UW1_3374 NC_013194.1 3872998 3875847 R PFAM: PglZ domain protein; KEGG: pna:Pnap_4279 PglZ domain; PglZ domain-containing protein complement(3872998..3875847) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405538 YP_003168567.1 CDS CAP2UW1_3375 NC_013194.1 3875852 3879499 R KEGG: pna:Pnap_4280 putative phage resistance protein; putative phage resistance protein complement(3875852..3879499) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405539 YP_003168568.1 CDS CAP2UW1_3376 NC_013194.1 3879496 3879624 R hypothetical protein complement(3879496..3879624) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405540 YP_003168569.1 CDS CAP2UW1_3377 NC_013194.1 3879621 3879860 R KEGG: npu:Npun_F0670 hypothetical protein; hypothetical protein complement(3879621..3879860) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405541 YP_003168570.1 CDS CAP2UW1_3379 NC_013194.1 3880066 3880839 R KEGG: psp:PSPPH_1029 hypothetical protein; hypothetical protein complement(3880066..3880839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405543 YP_003168571.1 CDS CAP2UW1_3380 NC_013194.1 3880836 3882305 R PFAM: SMC domain protein; KEGG: psp:PSPPH_1028 ATP binding protein; SMC domain-containing protein complement(3880836..3882305) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405544 YP_003168572.1 CDS CAP2UW1_3381 NC_013194.1 3882321 3885929 R KEGG: pna:Pnap_4283 hypothetical protein; hypothetical protein complement(3882321..3885929) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405545 YP_003168573.1 CDS CAP2UW1_3382 NC_013194.1 3886022 3890263 R PFAM: RNA polymerase alpha subunit domain protein; NERD domain protein; SMART: serine/threonine protein kinase; KEGG: pna:Pnap_4285 protein kinase; serine/threonine protein kinase complement(3886022..3890263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405546 YP_003168574.1 CDS CAP2UW1_3383 NC_013194.1 3890520 3890801 R hypothetical protein complement(3890520..3890801) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405547 YP_003168575.1 CDS CAP2UW1_3384 NC_013194.1 3891239 3891805 R KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein complement(3891239..3891805) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405548 YP_003168576.1 CDS CAP2UW1_3385 NC_013194.1 3891949 3892152 R hypothetical protein complement(3891949..3892152) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405549 YP_003168577.1 CDS CAP2UW1_3386 NC_013194.1 3892149 3892943 R KEGG: gka:GK1917 hypothetical protein; hypothetical protein complement(3892149..3892943) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405550 YP_003168578.1 CDS CAP2UW1_3387 NC_013194.1 3892946 3894271 R PFAM: Integrase catalytic region; KEGG: gka:GK1916 IS1604-like transposase; integrase catalytic subunit complement(3892946..3894271) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405551 YP_003168579.1 CDS CAP2UW1_3388 NC_013194.1 3894401 3894934 R KEGG: chy:CHY_1250 ISChy3, orf1; hypothetical protein complement(3894401..3894934) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405552 YP_003168580.1 CDS CAP2UW1_3389 NC_013194.1 3895091 3895381 R KEGG: sus:Acid_6122 hypothetical protein; hypothetical protein complement(3895091..3895381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405553 YP_003168581.1 CDS CAP2UW1_3392 NC_013194.1 3897779 3899095 R PFAM: protein of unknown function DUF58; KEGG: pae:PA4323 hypothetical protein; hypothetical protein complement(3897779..3899095) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405556 YP_003168582.1 CDS CAP2UW1_3393 NC_013194.1 3899096 3900094 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pmy:Pmen_3320 ATPase associated with various cellular activities, AAA_3; ATPase complement(3899096..3900094) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405557 YP_003168583.1 CDS CAP2UW1_3394 NC_013194.1 3900105 3901235 R KEGG: pfl:PFL_4792 hypothetical protein; hypothetical protein complement(3900105..3901235) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405558 YP_003168584.1 CDS CAP2UW1_3395 NC_013194.1 3901232 3902833 R KEGG: pfo:PflO1_4441 hypothetical protein; hypothetical protein complement(3901232..3902833) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405559 YP_003168585.1 CDS CAP2UW1_3396 NC_013194.1 3902823 3903809 R PFAM: protein of unknown function DUF95 transmembrane; KEGG: pst:PSPTO_4318 integral membrane protein; hypothetical protein complement(3902823..3903809) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405560 YP_003168586.1 CDS CAP2UW1_3397 NC_013194.1 3903941 3904546 R PFAM: protein of unknown function DUF330; KEGG: rme:Rmet_4087 protein of unknown function DUF330; hypothetical protein complement(3903941..3904546) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405561 YP_003168587.1 CDS CAP2UW1_3398 NC_013194.1 3904543 3906210 R PFAM: Mammalian cell entry related domain protein; KEGG: ppd:Ppro_0403 mammalian cell entry related domain protein; Mammalian cell entry related domain-containing protein complement(3904543..3906210) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405562 YP_003168588.1 CDS CAP2UW1_3399 NC_013194.1 3906203 3906835 R PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0402 paraquat-inducible protein A; Paraquat-inducible protein A complement(3906203..3906835) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405563 YP_003168589.1 CDS CAP2UW1_3400 NC_013194.1 3906832 3907488 R PFAM: Paraquat-inducible protein A; KEGG: bph:Bphy_0650 integral membrane protein, PqiA family; Paraquat-inducible protein A complement(3906832..3907488) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405564 YP_003168590.1 CDS CAP2UW1_3401 NC_013194.1 3907569 3909065 R PFAM: Patatin; KEGG: sfu:Sfum_1455 patatin; Patatin complement(3907569..3909065) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405565 YP_003168591.1 CDS CAP2UW1_3402 NC_013194.1 3909221 3911476 R KEGG: sus:Acid_3454 tetratricopeptide TPR_4; hypothetical protein complement(3909221..3911476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405566 YP_003168592.1 CDS CAP2UW1_3403 NC_013194.1 3911824 3915267 D PFAM: MscS Mechanosensitive ion channel; KEGG: noc:Noc_2151 MscS mechanosensitive ion channel; mechanosensitive ion channel protein MscS 3911824..3915267 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405567 YP_003168593.1 CDS CAP2UW1_3404 NC_013194.1 3915496 3916413 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: net:Neut_0698 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 3915496..3916413 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405568 YP_003168594.1 CDS CAP2UW1_3405 NC_013194.1 3916506 3916991 R KEGG: tbd:Tbd_0072 transcriptional regulator, AsnC family; putative AsnC family transcriptional regulator complement(3916506..3916991) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405569 YP_003168595.1 CDS CAP2UW1_3406 NC_013194.1 3916988 3917476 R KEGG: dar:Daro_3268 transcriptional regulator, AsnC family; putative AsnC family transcriptional regulator complement(3916988..3917476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405570 YP_003168596.1 CDS CAP2UW1_3407 NC_013194.1 3917469 3918449 R SMART: regulatory protein AsnC/Lrp family; KEGG: dar:Daro_3269 transcriptional regulator, AsnC family; putative AsnC family transcriptional regulator complement(3917469..3918449) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405571 YP_003168597.1 CDS CAP2UW1_3408 NC_013194.1 3918455 3919618 R PFAM: cytochrome d1 heme region; KEGG: dar:Daro_3270 cytochrome d1, heme region; cytochrome d1 heme region complement(3918455..3919618) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405572 YP_003168598.1 CDS CAP2UW1_3409 NC_013194.1 3919801 3920301 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1561 thioredoxin; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(3919801..3920301) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405573 YP_003168599.1 CDS CAP2UW1_3410 NC_013194.1 3920315 3921142 R KEGG: dar:Daro_1562 putative ABC-2 type transport system permease protein; putative ABC-2 type transport system permease complement(3920315..3921142) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405574 YP_003168600.1 CDS CAP2UW1_3411 NC_013194.1 3921153 3921590 R KEGG: mag:amb3077 hypothetical protein; hypothetical protein complement(3921153..3921590) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405575 YP_003168601.1 CDS CAP2UW1_3412 NC_013194.1 3921604 3922476 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1564 ABC transporter related; ABC transporter complement(3921604..3922476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405576 YP_003168602.1 CDS CAP2UW1_3413 NC_013194.1 3922489 3923451 R TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1565 ferredoxin-type protein, NapH/MauN family; ferredoxin-type protein, NapH/MauN family complement(3922489..3923451) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405577 YP_003168603.1 CDS CAP2UW1_3414 NC_013194.1 3923451 3924341 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1566 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein complement(3923451..3924341) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405578 YP_003168604.1 CDS CAP2UW1_3415 NC_013194.1 3924338 3925753 R PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: dar:Daro_1567 periplasmic copper-binding; periplasmic copper-binding protein complement(3924338..3925753) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405579 YP_003168605.1 CDS CAP2UW1_3416 NC_013194.1 3925757 3926746 R KEGG: dar:Daro_1568 hypothetical protein; hypothetical protein complement(3925757..3926746) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405580 YP_003168606.1 CDS CAP2UW1_3417 NC_013194.1 3926763 3927497 R PFAM: cytochrome c class I; KEGG: dar:Daro_1569 cytochrome c, class I; cytochrome c class I complement(3926763..3927497) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405581 YP_003168607.1 CDS CAP2UW1_3418 NC_013194.1 3927617 3927934 R PFAM: cytochrome c class I; KEGG: dar:Daro_1570 cytochrome c, class I; cytochrome c class I complement(3927617..3927934) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405582 YP_003168608.1 CDS CAP2UW1_3419 NC_013194.1 3928025 3930322 R PFAM: cytochrome c oxidase subunit II; KEGG: dar:Daro_1575 cytochrome c oxidase, subunit II; Nitrous-oxide reductase complement(3928025..3930322) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405583 YP_003168609.1 CDS CAP2UW1_3420 NC_013194.1 3930544 3931074 D KEGG: dar:Daro_1576 hypothetical protein; hypothetical protein 3930544..3931074 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405584 YP_003168610.1 CDS CAP2UW1_3421 NC_013194.1 3931093 3931731 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: dar:Daro_1577 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 3931093..3931731 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405585 YP_003168611.1 CDS CAP2UW1_3422 NC_013194.1 3931728 3932276 D PFAM: protein of unknown function DUF461; KEGG: dar:Daro_1578 protein of unknown function DUF461; hypothetical protein 3931728..3932276 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405586 YP_003168612.1 CDS CAP2UW1_3423 NC_013194.1 3932332 3932916 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: eba:ebA1468 thioredoxin; Redoxin domain-containing protein complement(3932332..3932916) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405587 YP_003168613.1 CDS CAP2UW1_3424 NC_013194.1 3932913 3934328 R KEGG: ech:ECH_1079 putative cytochrome c oxidase, subunit I; putative cytochrome c oxidase subunit I complement(3932913..3934328) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405588 YP_003168614.1 CDS CAP2UW1_3425 NC_013194.1 3934450 3935205 D PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dar:Daro_3198 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator 3934450..3935205 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405589 YP_003168615.1 CDS CAP2UW1_3426 NC_013194.1 3935247 3936725 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: dar:Daro_3355 adenylate cyclase; adenylate cyclase 3935247..3936725 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405590 YP_003168616.1 CDS CAP2UW1_3427 NC_013194.1 3936908 3938233 D KEGG: dar:Daro_0423 D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS family S13; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 3936908..3938233 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405591 YP_003168617.1 CDS CAP2UW1_3428 NC_013194.1 3938322 3942521 R KEGG: tcx:Tcr_1150 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein family 3; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(3938322..3942521) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405592 YP_003168618.1 CDS CAP2UW1_3429 NC_013194.1 3942707 3943018 D PFAM: regulatory protein ArsR; KEGG: dar:Daro_0401 regulatory protein, ArsR; ArsR family transcriptional regulator 3942707..3943018 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405593 YP_003168619.1 CDS CAP2UW1_3430 NC_013194.1 3943064 3944305 D PFAM: amidohydrolase 2; KEGG: azo:azo0149 putative mannonate dehydratase; amidohydrolase 2 3943064..3944305 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405594 YP_003168620.1 CDS CAP2UW1_3431 NC_013194.1 3944302 3946182 D PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: dar:Daro_0405 phospholipid/glycerol acyltransferase:major facilitator superfamily MFS_1; phospholipid/glycerol acyltransferase 3944302..3946182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405595 YP_003168621.1 CDS CAP2UW1_3432 NC_013194.1 3946193 3947089 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: dar:Daro_0413 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyl transferase 3946193..3947089 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405596 YP_003168622.1 CDS CAP2UW1_3433 NC_013194.1 3947086 3947514 D KEGG: dar:Daro_0414 hypothetical protein; hypothetical protein 3947086..3947514 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405597 YP_003168623.1 CDS CAP2UW1_3435 NC_013194.1 3949058 3949456 D KEGG: dar:Daro_0419 hypothetical protein; hypothetical protein 3949058..3949456 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405599 YP_003168624.1 CDS CAP2UW1_3436 NC_013194.1 3949399 3952437 R KEGG: ava:Ava_3043 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3949399..3952437) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405600 YP_003168625.1 CDS CAP2UW1_3437 NC_013194.1 3952674 3953291 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: eba:ebA125 two-component response regulator; two component LuxR family transcriptional regulator 3952674..3953291 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405601 YP_003168626.1 CDS CAP2UW1_3438 NC_013194.1 3953527 3953895 D PFAM: response regulator receiver; KEGG: dar:Daro_1139 response regulator receiver; response regulator receiver protein 3953527..3953895 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405602 YP_003168627.1 CDS CAP2UW1_3439 NC_013194.1 3953905 3955254 D PFAM: chemotaxis sensory transducer; KEGG: azo:azo0410 putative methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3953905..3955254 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405603 YP_003168628.1 CDS CAP2UW1_3440 NC_013194.1 3955289 3955594 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: azo:azo0409 putative STAS domain protein; anti-sigma-factor antagonist 3955289..3955594 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405604 YP_003168629.1 CDS CAP2UW1_3441 NC_013194.1 3955641 3957830 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: azo:azo0408 putative chemotaxis protein histidine kinase; CheA signal transduction histidine kinase 3955641..3957830 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405605 YP_003168630.1 CDS CAP2UW1_3442 NC_013194.1 3957904 3959544 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3957904..3959544 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405606 YP_003168631.1 CDS CAP2UW1_3443 NC_013194.1 3959555 3960142 D PFAM: CheW domain protein; KEGG: dar:Daro_1144 CheW-like protein; CheW protein 3959555..3960142 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405607 YP_003168632.1 CDS CAP2UW1_3444 NC_013194.1 3960248 3961900 D PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3960248..3961900 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405608 YP_003168633.1 CDS CAP2UW1_3445 NC_013194.1 3961911 3962492 D PFAM: CheW domain protein; KEGG: dar:Daro_1144 CheW-like protein; CheW protein 3961911..3962492 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405609 YP_003168634.1 CDS CAP2UW1_3446 NC_013194.1 3962553 3964196 D PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_1143 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3962553..3964196 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405610 YP_003168635.1 CDS CAP2UW1_3447 NC_013194.1 3964283 3966229 D PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dac:Daci_3084 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3964283..3966229 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405611 YP_003168636.1 CDS CAP2UW1_3448 NC_013194.1 3966276 3967196 D SMART: PAS domain containing protein; KEGG: gsu:GSU2789 sensory box histidine kinase; putative PAS/PAC sensor protein 3966276..3967196 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405612 YP_003168637.1 CDS CAP2UW1_3449 NC_013194.1 3967193 3967753 D stimulates methylation of MCP proteins; PFAM: CheD family protein; KEGG: dar:Daro_1145 CheD; CheD 3967193..3967753 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405613 YP_003168638.1 CDS CAP2UW1_3450 NC_013194.1 3967760 3968572 D PFAM: MCP methyltransferase CheR-type; KEGG: azo:azo0403 probable chemotaxis protein methyltransferase; CheR-type MCP methyltransferase 3967760..3968572 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405614 YP_003168639.1 CDS CAP2UW1_3451 NC_013194.1 3968600 3969433 D PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_1149 putative signal transduction protein; putative signal transduction protein 3968600..3969433 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405615 YP_003168640.1 CDS CAP2UW1_3452 NC_013194.1 3969563 3970951 D PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: azo:azo0545 putative methyl-accepting chemotaxis protein; Cache sensor-containing methyl-accepting chemotaxis sensory transducer 3969563..3970951 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405616 YP_003168641.1 CDS CAP2UW1_3453 NC_013194.1 3970981 3973056 R KEGG: dar:Daro_0356 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG complement(3970981..3973056) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405617 YP_003168642.1 CDS CAP2UW1_3454 NC_013194.1 3973056 3973439 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: dar:Daro_0355 endoribonuclease L-PSP; endoribonuclease L-PSP complement(3973056..3973439) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405618 YP_003168643.1 CDS CAP2UW1_3455 NC_013194.1 3973481 3973819 D KEGG: dar:Daro_0354 TPR repeat; TPR repeat-containing protein 3973481..3973819 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405619 YP_003168644.1 CDS CAP2UW1_3456 NC_013194.1 3973824 3974552 R PFAM: Sporulation domain protein; KEGG: dar:Daro_0352 sporulation related; Sporulation domain-containing protein complement(3973824..3974552) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405620 YP_003168645.1 CDS CAP2UW1_3457 NC_013194.1 3974573 3975184 R KEGG: dar:Daro_0351 hypothetical protein; hypothetical protein complement(3974573..3975184) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405621 YP_003168646.1 CDS CAP2UW1_3458 NC_013194.1 3975386 3976588 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3975386..3976588) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405622 YP_003168647.1 CDS CAP2UW1_3459 NC_013194.1 3976609 3978996 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dar:Daro_1549 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(3976609..3978996) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405623 YP_003168648.1 CDS CAP2UW1_3460 NC_013194.1 3979213 3980553 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: dar:Daro_1548 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(3979213..3980553) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405624 YP_003168649.1 CDS CAP2UW1_3461 NC_013194.1 3980656 3981054 R PFAM: thioesterase superfamily protein; KEGG: dar:Daro_0349 thioesterase superfamily; thioesterase superfamily protein complement(3980656..3981054) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405625 YP_003168650.1 CDS CAP2UW1_3462 NC_013194.1 3981047 3982975 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: dar:Daro_1547 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase complement(3981047..3982975) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405626 YP_003168651.1 CDS CAP2UW1_3463 NC_013194.1 3983008 3984297 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3983008..3984297) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405627 YP_003168652.1 CDS fadE NC_013194.1 3984377 3986725 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(3984377..3986725) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405628 YP_003168653.1 CDS CAP2UW1_3465 NC_013194.1 3986800 3987528 R PFAM: regulatory protein TetR; KEGG: dar:Daro_1543 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(3986800..3987528) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405629 YP_003168654.1 CDS CAP2UW1_3466 NC_013194.1 3987730 3989577 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0348 ABC transporter, transmembrane region:ABC transporter related; ABC transporter 3987730..3989577 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405630 YP_003168655.1 CDS CAP2UW1_3467 NC_013194.1 3989632 3990030 R PFAM: ribosomal protein L17; KEGG: dar:Daro_0346 LSU ribosomal protein L17P; 50S ribosomal protein L17 complement(3989632..3990030) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405631 YP_003168656.1 CDS CAP2UW1_3468 NC_013194.1 3990061 3991035 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3990061..3991035) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405632 YP_003168657.1 CDS rpsD NC_013194.1 3991075 3991704 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3991075..3991704) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405633 YP_003168658.1 CDS CAP2UW1_3470 NC_013194.1 3991717 3992112 R PFAM: ribosomal protein S11; KEGG: azo:azo3393 30S ribosomal protein S11; 30S ribosomal protein S11 complement(3991717..3992112) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405634 YP_003168659.1 CDS rpsM NC_013194.1 3992133 3992495 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3992133..3992495) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405635 YP_003168660.1 CDS CAP2UW1_3472 NC_013194.1 3992754 3992972 R TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: mfa:Mfla_0300 translation initiation factor IF-1; translation initiation factor IF-1 complement(3992754..3992972) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405636 YP_003168661.1 CDS secY NC_013194.1 3992974 3994299 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3992974..3994299) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405637 YP_003168662.1 CDS rplO NC_013194.1 3994323 3994757 R late assembly protein; 50S ribosomal protein L15 complement(3994323..3994757) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405638 YP_003168663.1 CDS CAP2UW1_3475 NC_013194.1 3994759 3994941 R PFAM: ribosomal protein L30; KEGG: eba:ebC4 50S ribosomal protein L30; 50S ribosomal protein L30 complement(3994759..3994941) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405639 YP_003168664.1 CDS rpsE NC_013194.1 3994945 3995469 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3994945..3995469) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405640 YP_003168665.1 CDS CAP2UW1_3477 NC_013194.1 3995497 3995853 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: dar:Daro_0335 50S ribosomal protein L18; 50S ribosomal protein L18 complement(3995497..3995853) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405641 YP_003168666.1 CDS CAP2UW1_3478 NC_013194.1 3995864 3996400 R PFAM: ribosomal protein L6; KEGG: azo:azo3402 50S ribosomal protein L6; 50S ribosomal protein L6 complement(3995864..3996400) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405642 YP_003168667.1 CDS CAP2UW1_3479 NC_013194.1 3996410 3996805 R PFAM: ribosomal protein S8; KEGG: dar:Daro_0333 30S ribosomal protein S8; 30S ribosomal protein S8 complement(3996410..3996805) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405643 YP_003168668.1 CDS CAP2UW1_3480 NC_013194.1 3996821 3997126 R PFAM: ribosomal protein S14; KEGG: dar:Daro_0332 SSU ribosomal protein S14P; 30S ribosomal protein S14 complement(3996821..3997126) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405644 YP_003168669.1 CDS CAP2UW1_3481 NC_013194.1 3997133 3997672 R PFAM: ribosomal protein L5; KEGG: dar:Daro_0331 50S ribosomal protein L5; 50S ribosomal protein L5 complement(3997133..3997672) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405645 YP_003168670.1 CDS rplX NC_013194.1 3997682 3997999 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3997682..3997999) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405646 YP_003168671.1 CDS CAP2UW1_3483 NC_013194.1 3998008 3998376 R TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: mfa:Mfla_0289 50S ribosomal protein L14; 50S ribosomal protein L14 complement(3998008..3998376) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405647 YP_003168672.1 CDS CAP2UW1_3484 NC_013194.1 3998509 3998775 R PFAM: ribosomal protein S17; KEGG: dar:Daro_0328 SSU ribosomal protein S17P; 30S ribosomal protein S17 complement(3998509..3998775) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405648 YP_003168673.1 CDS CAP2UW1_3485 NC_013194.1 3998772 3998966 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3998772..3998966) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405649 YP_003168674.1 CDS CAP2UW1_3486 NC_013194.1 3998969 3999382 R PFAM: ribosomal protein L16; KEGG: dar:Daro_0326 50S ribosomal protein L16; 50S ribosomal protein L16 complement(3998969..3999382) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405650 YP_003168675.1 CDS rpsC NC_013194.1 3999366 4000214 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3999366..4000214) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405651 YP_003168676.1 CDS rplV NC_013194.1 4000224 4000553 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(4000224..4000553) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405652 YP_003168677.1 CDS rpsS NC_013194.1 4000564 4000839 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(4000564..4000839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405653 YP_003168678.1 CDS CAP2UW1_3490 NC_013194.1 4000853 4001683 R PFAM: ribosomal protein L2; KEGG: bxe:Bxe_A0317 50S ribosomal protein L2; 50S ribosomal protein L2 complement(4000853..4001683) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405654 YP_003168679.1 CDS rplW NC_013194.1 4001683 4001985 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(4001683..4001985) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405655 YP_003168680.1 CDS rplD NC_013194.1 4001982 4002602 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(4001982..4002602) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405656 YP_003168681.1 CDS CAP2UW1_3493 NC_013194.1 4002603 4003247 R PFAM: ribosomal protein L3; KEGG: dar:Daro_0319 50S ribosomal protein L3; 50S ribosomal protein L3 complement(4002603..4003247) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405657 YP_003168682.1 CDS CAP2UW1_3494 NC_013194.1 4003363 4003674 R PFAM: ribosomal protein S10; KEGG: lch:Lcho_3865 ribosomal protein S10; 30S ribosomal protein S10 complement(4003363..4003674) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405658 YP_003168683.1 CDS CAP2UW1_3495 NC_013194.1 4003733 4004923 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: azo:azo3431 elongation factor Tu; translation elongation factor Tu complement(4003733..4004923) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405659 YP_003168684.1 CDS CAP2UW1_3496 NC_013194.1 4004946 4007039 R TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dar:Daro_0316 translation elongation factor 2 (EF-2/EF-G); translation elongation factor G complement(4004946..4007039) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405660 YP_003168685.1 CDS CAP2UW1_3497 NC_013194.1 4007099 4007569 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(4007099..4007569) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405661 YP_003168686.1 CDS CAP2UW1_3498 NC_013194.1 4007661 4008038 R TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: dar:Daro_0314 30S ribosomal protein S12; 30S ribosomal protein S12 complement(4007661..4008038) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405662 YP_003168687.1 CDS CAP2UW1_3499 NC_013194.1 4008203 4012414 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(4008203..4012414) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405663 YP_003168688.1 CDS rpoB NC_013194.1 4012506 4016789 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(4012506..4016789) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405664 YP_003168689.1 CDS CAP2UW1_3501 NC_013194.1 4017050 4017418 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: eba:ebB123 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(4017050..4017418) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405665 YP_003168690.1 CDS CAP2UW1_3502 NC_013194.1 4017467 4017964 R PFAM: ribosomal protein L10; KEGG: eba:ebA3816 50S ribosomal protein L10; 50S ribosomal protein L10 complement(4017467..4017964) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405666 YP_003168691.1 CDS CAP2UW1_3503 NC_013194.1 4018245 4018934 R PFAM: ribosomal protein L1; KEGG: dar:Daro_0309 LSU ribosomal protein L1P; 50S ribosomal protein L1 complement(4018245..4018934) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405667 YP_003168692.1 CDS CAP2UW1_3504 NC_013194.1 4018936 4019367 R PFAM: ribosomal protein L11; KEGG: bpt:Bpet4969 50S ribosomal protein L11; 50S ribosomal protein L11 complement(4018936..4019367) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405668 YP_003168693.1 CDS nusG NC_013194.1 4019496 4020029 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(4019496..4020029) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405669 YP_003168694.1 CDS secE NC_013194.1 4020026 4020379 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(4020026..4020379) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405670 YP_003168695.1 CDS CAP2UW1_3507 NC_013194.1 4020532 4021722 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: azo:azo3431 elongation factor Tu; translation elongation factor Tu complement(4020532..4021722) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405672 YP_003168696.1 CDS CAP2UW1_3508 NC_013194.1 4022279 4023685 D PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_0268 FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal; D-lactate dehydrogenase (cytochrome) 4022279..4023685 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405676 YP_003168697.1 CDS CAP2UW1_3509 NC_013194.1 4023805 4027407 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 4023805..4027407 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405677 YP_003168698.1 CDS CAP2UW1_3510 NC_013194.1 4027498 4028016 R PFAM: GCN5-related N-acetyltransferase; KEGG: cak:Caul_1371 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(4027498..4028016) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405678 YP_003168699.1 CDS CAP2UW1_3511 NC_013194.1 4028013 4028294 R PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein; hypothetical protein complement(4028013..4028294) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405679 YP_003168700.1 CDS CAP2UW1_3512 NC_013194.1 4028711 4029661 R PFAM: protein of unknown function DUF323; KEGG: lch:Lcho_3768 protein of unknown function DUF323; hypothetical protein complement(4028711..4029661) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405680 YP_003168701.1 CDS CAP2UW1_3513 NC_013194.1 4029912 4031438 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 4029912..4031438 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405681 YP_003168702.1 CDS CAP2UW1_3515 NC_013194.1 4032239 4033267 D KEGG: psa:PST_0578 conserved possible transposase; hypothetical protein 4032239..4033267 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405683 YP_003168703.1 CDS CAP2UW1_3516 NC_013194.1 4033273 4033707 R KEGG: psa:PST_0577 hypothetical protein; hypothetical protein complement(4033273..4033707) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405684 YP_003168704.1 CDS CAP2UW1_3517 NC_013194.1 4034854 4035087 R hypothetical protein complement(4034854..4035087) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405685 YP_003168705.1 CDS CAP2UW1_3518 NC_013194.1 4035261 4035992 R TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: azo:azo0107 hypothetical protein; hypothetical protein complement(4035261..4035992) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405686 YP_003168706.1 CDS CAP2UW1_3519 NC_013194.1 4036313 4036765 D PFAM: cyclase/dehydrase; KEGG: noc:Noc_2987 hypothetical protein; cyclase/dehydrase 4036313..4036765 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405687 YP_003168707.1 CDS CAP2UW1_3520 NC_013194.1 4036819 4037250 D KEGG: nmu:Nmul_A1787 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 4036819..4037250 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405688 YP_003168708.1 CDS CAP2UW1_3521 NC_013194.1 4037330 4037731 R PFAM: protein of unknown function DUF1486; KEGG: dps:DP0868 hypothetical protein; hypothetical protein complement(4037330..4037731) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405689 YP_003168709.1 CDS CAP2UW1_3522 NC_013194.1 4037894 4038520 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bcm:Bcenmc03_4942 lysine exporter protein (LysE/YggA); lysine exporter protein LysE/YggA complement(4037894..4038520) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405690 YP_003168710.1 CDS CAP2UW1_3523 NC_013194.1 4038712 4039014 R KEGG: pol:Bpro_3355 cold-shock DNA-binding protein family; cold-shock DNA-binding protein family complement(4038712..4039014) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405691 YP_003168711.1 CDS CAP2UW1_3524 NC_013194.1 4039286 4039981 D KEGG: met:M446_1545 TRAP-type uncharacterized transport system periplasmic component-like protein; TRAP-type transport system periplasmic component-like protein 4039286..4039981 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405692 YP_003168712.1 CDS CAP2UW1_3525 NC_013194.1 4040004 4040192 D hypothetical protein 4040004..4040192 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405693 YP_003168713.1 CDS CAP2UW1_3526 NC_013194.1 4040235 4040684 R PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: rfr:Rfer_2543 hypothetical protein; Activator of Hsp90 ATPase 1 family protein complement(4040235..4040684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405694 YP_003168714.1 CDS CAP2UW1_3527 NC_013194.1 4040786 4041235 R hypothetical protein complement(4040786..4041235) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405695 YP_003168715.1 CDS CAP2UW1_3528 NC_013194.1 4041309 4042301 R hypothetical protein complement(4041309..4042301) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405696 YP_003168716.1 CDS CAP2UW1_3529 NC_013194.1 4042319 4042543 D hypothetical protein 4042319..4042543 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405697 YP_003168717.1 CDS CAP2UW1_3530 NC_013194.1 4042527 4044755 D KEGG: cpb:Cphamn1_0882 hypothetical protein; hypothetical protein 4042527..4044755 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405698 YP_003168718.1 CDS CAP2UW1_3531 NC_013194.1 4044998 4045138 D hypothetical protein 4044998..4045138 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405699 YP_003168719.1 CDS CAP2UW1_3532 NC_013194.1 4045245 4045694 R hypothetical protein complement(4045245..4045694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405700 YP_003168720.1 CDS CAP2UW1_3533 NC_013194.1 4045883 4046137 R PFAM: SEC-C motif domain protein; KEGG: sfr:Sfri_0915 sec-C motif domain protein; SEC-C motif domain-containing protein complement(4045883..4046137) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405701 YP_003168721.1 CDS CAP2UW1_3535 NC_013194.1 4046818 4047258 R hypothetical protein complement(4046818..4047258) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405703 YP_003168722.1 CDS CAP2UW1_3536 NC_013194.1 4047352 4048170 R PFAM: Methyltransferase type 11; KEGG: hch:HCH_03658 SAM-dependent methyltransferase; type 11 methyltransferase complement(4047352..4048170) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405704 YP_003168723.1 CDS CAP2UW1_3537 NC_013194.1 4048317 4048574 R KEGG: dsy:DSY1781 hypothetical protein; hypothetical protein complement(4048317..4048574) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405705 YP_003168724.1 CDS CAP2UW1_3538 NC_013194.1 4048921 4049262 R KEGG: sml:Smlt4594 hypothetical protein; hypothetical protein complement(4048921..4049262) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405706 YP_003168725.1 CDS CAP2UW1_3539 NC_013194.1 4049635 4049838 R KEGG: bmu:Bmul_6248 hypothetical protein; hypothetical protein complement(4049635..4049838) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405707 YP_003168726.1 CDS CAP2UW1_3540 NC_013194.1 4050060 4050335 R KEGG: lch:Lcho_4146 hypothetical protein; hypothetical protein complement(4050060..4050335) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405708 YP_003168727.1 CDS CAP2UW1_3541 NC_013194.1 4050440 4050895 R KEGG: pna:Pnap_0373 hypothetical protein; hypothetical protein complement(4050440..4050895) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405709 YP_003168728.1 CDS CAP2UW1_3542 NC_013194.1 4050995 4051591 R KEGG: rec:RHECIAT_CH0002802 hypothetical protein; hypothetical protein complement(4050995..4051591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405710 YP_003168729.1 CDS CAP2UW1_3543 NC_013194.1 4052499 4052918 R hypothetical protein complement(4052499..4052918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405711 YP_003168730.1 CDS CAP2UW1_3544 NC_013194.1 4053064 4053258 R KEGG: mes:Meso_1533 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(4053064..4053258) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405712 YP_003168731.1 CDS CAP2UW1_3545 NC_013194.1 4053454 4053630 R KEGG: ppg:PputGB1_1741 hypothetical protein; hypothetical protein complement(4053454..4053630) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405713 YP_003168732.1 CDS CAP2UW1_3546 NC_013194.1 4053735 4054145 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mlo:mlr0112 hypothetical protein; glutathione-dependent formaldehyde-activating protein complement(4053735..4054145) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405714 YP_003168733.1 CDS CAP2UW1_3547 NC_013194.1 4054250 4054681 R hypothetical protein complement(4054250..4054681) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405715 YP_003168734.1 CDS CAP2UW1_3548 NC_013194.1 4054769 4055440 R hypothetical protein complement(4054769..4055440) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405716 YP_003168735.1 CDS CAP2UW1_3549 NC_013194.1 4055532 4055690 D hypothetical protein 4055532..4055690 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405717 YP_003168736.1 CDS CAP2UW1_3550 NC_013194.1 4056725 4057219 D PFAM: Ferritin Dps family protein; KEGG: rpb:RPB_0853 ferritin and Dps; Ferritin Dps family protein 4056725..4057219 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405718 YP_003168737.1 CDS CAP2UW1_3551 NC_013194.1 4057269 4057880 R KEGG: eba:ebA6073 hypothetical protein; hypothetical protein complement(4057269..4057880) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405719 YP_003168738.1 CDS CAP2UW1_3552 NC_013194.1 4057877 4058317 R PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_3950 hemerythrin HHE cation binding region; Hemerythrin HHE cation-binding domain-containing protein complement(4057877..4058317) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405720 YP_003168739.1 CDS CAP2UW1_3553 NC_013194.1 4058314 4058547 R hypothetical protein complement(4058314..4058547) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405721 YP_003168740.1 CDS CAP2UW1_3554 NC_013194.1 4058699 4059682 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1643 alcohol dehydrogenase, zinc-binding; quinone oxidoreductase, YhdH/YhfP family 4058699..4059682 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405722 YP_003168741.1 CDS CAP2UW1_3555 NC_013194.1 4059933 4060163 R TIGRFAM: prevent-host-death family protein; KEGG: azo:azo0288 hypothetical protein; prevent-host-death family protein complement(4059933..4060163) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405723 YP_003168742.1 CDS CAP2UW1_3556 NC_013194.1 4060328 4061314 R PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: azo:azo3751 probable AraC family transcriptional regulator; AraC family transcriptional regulator complement(4060328..4061314) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405724 YP_003168743.1 CDS CAP2UW1_3557 NC_013194.1 4061311 4062201 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: psa:PST_1584 hypothetical protein; hypothetical protein complement(4061311..4062201) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405725 YP_003168744.1 CDS CAP2UW1_3558 NC_013194.1 4062206 4062481 R PFAM: protein of unknown function DUF1272; KEGG: sme:SMc01940 hypothetical protein; hypothetical protein complement(4062206..4062481) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405726 YP_003168745.1 CDS CAP2UW1_3559 NC_013194.1 4062474 4063058 R PFAM: isochorismatase hydrolase; KEGG: azo:azo3750 isochorismatase family protein; isochorismatase hydrolase complement(4062474..4063058) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405727 YP_003168746.1 CDS CAP2UW1_3560 NC_013194.1 4063241 4064020 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: cps:CPS_3143 phenazine biosynthesis protein, PhzF family; phenazine biosynthesis protein PhzF family 4063241..4064020 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405728 YP_003168747.1 CDS CAP2UW1_3561 NC_013194.1 4064062 4065588 R PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: eba:ebA1881 hypothetical protein; hypothetical protein complement(4064062..4065588) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405729 YP_003168748.1 CDS CAP2UW1_3562 NC_013194.1 4065730 4066455 D PFAM: protein of unknown function DUF28; KEGG: dar:Daro_4067 hypothetical protein; hypothetical protein 4065730..4066455 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405730 YP_003168749.1 CDS CAP2UW1_3563 NC_013194.1 4066489 4067730 R hypothetical protein complement(4066489..4067730) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405731 YP_003168750.1 CDS CAP2UW1_3564 NC_013194.1 4067860 4069695 R PFAM: Carbamoyltransferase; KEGG: mag:amb0035 predicted carbamoyl transferase; carbamoyltransferase complement(4067860..4069695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405732 YP_003168751.1 CDS CAP2UW1_3565 NC_013194.1 4069698 4069847 R KEGG: mgm:Mmc1_0763 hypothetical protein; hypothetical protein complement(4069698..4069847) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405733 YP_003168752.1 CDS CAP2UW1_3566 NC_013194.1 4069859 4070254 R KEGG: bid:Bind_1559 hypothetical protein; hypothetical protein complement(4069859..4070254) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405734 YP_003168753.1 CDS CAP2UW1_3567 NC_013194.1 4070385 4070579 R KEGG: har:HEAR0421 hypothetical protein; hypothetical protein complement(4070385..4070579) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405735 YP_003168754.1 CDS CAP2UW1_3568 NC_013194.1 4070669 4071001 R PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1; RNP-1 like RNA-binding protein complement(4070669..4071001) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405736 YP_003168755.1 CDS CAP2UW1_3569 NC_013194.1 4071468 4072970 D SMART: TIR protein; KEGG: tca:662755 similar to Toll protein precursor; TIR protein 4071468..4072970 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405737 YP_003168756.1 CDS CAP2UW1_3570 NC_013194.1 4072974 4077017 D PFAM: WD-40 repeat protein; KEGG: ter:Tery_3869 WD-40 repeat; WD-40 repeat-containing protein 4072974..4077017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405738 YP_003168757.1 CDS CAP2UW1_3571 NC_013194.1 4077247 4078758 D PFAM: Na+/solute symporter; KEGG: dar:Daro_4155 Na+/solute symporter; Na+/solute symporter 4077247..4078758 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405739 YP_003168758.1 CDS CAP2UW1_3572 NC_013194.1 4078838 4079956 D PFAM: VanZ family protein; KEGG: dar:Daro_4156 VanZ like protein; VanZ family protein 4078838..4079956 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405740 YP_003168759.1 CDS CAP2UW1_3573 NC_013194.1 4079963 4081003 R PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA3490 hypothetical protein; heat shock protein DnaJ domain-containing protein complement(4079963..4081003) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405741 YP_003168760.1 CDS CAP2UW1_3574 NC_013194.1 4081218 4081526 D KEGG: eba:ebB118 Fe2-S2-type ferredoxin; Fe2-S2-type ferredoxin 4081218..4081526 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405742 YP_003168761.1 CDS CAP2UW1_3575 NC_013194.1 4081603 4082241 D KEGG: dar:Daro_4159 hypothetical protein; hypothetical protein 4081603..4082241 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405743 YP_003168762.1 CDS CAP2UW1_3576 NC_013194.1 4082229 4083182 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4160 ABC transporter related; ABC transporter 4082229..4083182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405744 YP_003168763.1 CDS CAP2UW1_3577 NC_013194.1 4083186 4083971 D TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: dar:Daro_4165 ABC-2 type transporter, NodJ; NodJ family ABC transporter 4083186..4083971 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405745 YP_003168764.1 CDS CAP2UW1_3578 NC_013194.1 4084084 4084416 D PFAM: CutA1 divalent ion tolerance protein; KEGG: eba:ebA3572 divalent cation tolerance protein; CutA1 divalent ion tolerance protein 4084084..4084416 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405746 YP_003168765.1 CDS CAP2UW1_3579 NC_013194.1 4084435 4086201 D PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: dar:Daro_4167 cytochrome c biogenesis protein, transmembrane region; protein-disulfide reductase 4084435..4086201 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405747 YP_003168766.1 CDS CAP2UW1_3580 NC_013194.1 4086271 4087608 R KEGG: dar:Daro_2877 hypothetical protein; hypothetical protein complement(4086271..4087608) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405748 YP_003168767.1 CDS CAP2UW1_3581 NC_013194.1 4087956 4089338 D PFAM: Mg2 transporter protein CorA family protein; KEGG: dar:Daro_3905 Mg2+ transporter protein, CorA-like; Mg2 transporter protein CorA family protein 4087956..4089338 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405749 YP_003168768.1 CDS CAP2UW1_3582 NC_013194.1 4089396 4090676 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(4089396..4090676) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405750 YP_003168769.1 CDS CAP2UW1_3583 NC_013194.1 4090673 4091317 R KEGG: dar:Daro_3901 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(4090673..4091317) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405751 YP_003168770.1 CDS CAP2UW1_3584 NC_013194.1 4091310 4092158 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: nmu:Nmul_A2627 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase complement(4091310..4092158) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405752 YP_003168771.1 CDS CAP2UW1_3585 NC_013194.1 4092292 4092480 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bmu:Bmul_2526 rubredoxin-type Fe(Cys)4 protein; Rubredoxin-type Fe(Cys)4 protein 4092292..4092480 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405753 YP_003168772.1 CDS CAP2UW1_3586 NC_013194.1 4092572 4092967 D PFAM: response regulator receiver; KEGG: dar:Daro_3899 response regulator receiver; response regulator receiver protein 4092572..4092967 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405754 YP_003168773.1 CDS CAP2UW1_3587 NC_013194.1 4093011 4093373 D PFAM: response regulator receiver; KEGG: eba:ebB50 type IV pilus response regulator PilH; response regulator receiver protein 4093011..4093373 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405755 YP_003168774.1 CDS CAP2UW1_3588 NC_013194.1 4093388 4093897 D PFAM: CheW domain protein; KEGG: dar:Daro_3897 CheW protein; CheW protein 4093388..4093897 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405756 YP_003168775.1 CDS CAP2UW1_3589 NC_013194.1 4093970 4096135 D PFAM: chemotaxis sensory transducer; KEGG: dar:Daro_3896 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4093970..4096135 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405757 YP_003168776.1 CDS CAP2UW1_3590 NC_013194.1 4096176 4101569 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: dar:Daro_3895 response regulator receiver:CheW-like protein:ATP-binding region, ATPase-like:Hpt; CheA signal transduction histidine kinase 4096176..4101569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405758 YP_003168777.1 CDS CAP2UW1_3591 NC_013194.1 4101547 4102995 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: dar:Daro_3894 deoxyribodipyrimidine photo-lyase type I; Deoxyribodipyrimidine photo-lyase complement(4101547..4102995) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405759 YP_003168778.1 CDS CAP2UW1_3592 NC_013194.1 4103043 4103603 D PFAM: protein of unknown function DUF179; KEGG: dar:Daro_3893 protein of unknown function DUF179; hypothetical protein 4103043..4103603 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405760 YP_003168779.1 CDS CAP2UW1_3593 NC_013194.1 4103596 4104102 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: mfa:Mfla_2100 Holliday junction resolvase-like protein; Holliday junction resolvase YqgF 4103596..4104102 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405761 YP_003168780.1 CDS CAP2UW1_3594 NC_013194.1 4104089 4104595 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 4104089..4104595 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405762 YP_003168781.1 CDS CAP2UW1_3595 NC_013194.1 4104588 4105547 D TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: dar:Daro_3890 aspartate carbamoyltransferase catalytic subunit; aspartate carbamoyltransferase 4104588..4105547 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405763 YP_003168782.1 CDS CAP2UW1_3596 NC_013194.1 4105551 4106807 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4105551..4106807 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405764 YP_003168783.1 CDS CAP2UW1_3597 NC_013194.1 4106825 4107115 R PFAM: protein of unknown function DUF167; KEGG: dar:Daro_3887 conserved hypothetical protein 251; hypothetical protein complement(4106825..4107115) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405765 YP_003168784.1 CDS CAP2UW1_3598 NC_013194.1 4107119 4107658 R PFAM: protein of unknown function YGGT; KEGG: eba:ebA1764 hypothetical protein; hypothetical protein complement(4107119..4107658) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405766 YP_003168785.1 CDS CAP2UW1_3599 NC_013194.1 4107658 4108473 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(4107658..4108473) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405767 YP_003168786.1 CDS CAP2UW1_3600 NC_013194.1 4108470 4109159 R PFAM: alanine racemase domain protein; KEGG: dar:Daro_3884 hypothetical protein; alanine racemase domain-containing protein complement(4108470..4109159) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405768 YP_003168787.1 CDS CAP2UW1_3601 NC_013194.1 4109229 4110275 D KEGG: dar:Daro_3883 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 4109229..4110275 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405769 YP_003168788.1 CDS CAP2UW1_3602 NC_013194.1 4110303 4111442 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_3882 pilus retraction protein PilT; twitching motility protein 4110303..4111442 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405770 YP_003168789.1 CDS CAP2UW1_3603 NC_013194.1 4111530 4112714 R PFAM: putative RNA methylase; THUMP domain protein; KEGG: azo:azo3477 hypothetical protein; putative RNA methylase complement(4111530..4112714) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405771 YP_003168790.1 CDS CAP2UW1_3604 NC_013194.1 4112736 4113152 R PFAM: conserved hypothetical protein; KEGG: dar:Daro_0281 conserved hypothetical protein 701; hypothetical protein complement(4112736..4113152) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405772 YP_003168791.1 CDS CAP2UW1_3605 NC_013194.1 4113146 4114051 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dar:Daro_0280 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase complement(4113146..4114051) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405773 YP_003168792.1 CDS CAP2UW1_3606 NC_013194.1 4114091 4115164 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_0279 CDP-6-deoxy-delta-3,4-glucoseen reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4114091..4115164 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405774 YP_003168793.1 CDS CAP2UW1_3607 NC_013194.1 4115157 4116332 D PFAM: Metal-dependent hydrolase HDOD; KEGG: azo:azo3497 conserved hypothetical regulator protein; putative signal transduction protein 4115157..4116332 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405775 YP_003168794.1 CDS CAP2UW1_3608 NC_013194.1 4116342 4117046 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0274 ABC transporter related; ABC transporter complement(4116342..4117046) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405776 YP_003168795.1 CDS CAP2UW1_3609 NC_013194.1 4117063 4117839 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0273 ABC transporter related; ABC transporter complement(4117063..4117839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405777 YP_003168796.1 CDS CAP2UW1_3610 NC_013194.1 4117842 4118918 R PFAM: inner-membrane translocator; KEGG: dar:Daro_0272 inner-membrane translocator; inner-membrane translocator complement(4117842..4118918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405778 YP_003168797.1 CDS CAP2UW1_3611 NC_013194.1 4118915 4119838 R PFAM: inner-membrane translocator; KEGG: dar:Daro_0271 inner-membrane translocator; inner-membrane translocator complement(4118915..4119838) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405779 YP_003168798.1 CDS CAP2UW1_3612 NC_013194.1 4120002 4121285 R PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_0270 extracellular ligand-binding receptor; Extracellular ligand-binding receptor complement(4120002..4121285) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405780 YP_003168799.1 CDS CAP2UW1_3613 NC_013194.1 4121456 4121767 R PFAM: cytochrome c class I; KEGG: dar:Daro_0304 cytochrome c, class I; cytochrome c class I complement(4121456..4121767) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405781 YP_003168800.1 CDS CAP2UW1_3614 NC_013194.1 4121924 4123780 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(4121924..4123780) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405782 YP_003168801.1 CDS CAP2UW1_3615 NC_013194.1 4123864 4124661 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: dar:Daro_0301 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 4123864..4124661 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405783 YP_003168802.1 CDS CAP2UW1_3616 NC_013194.1 4124700 4126085 D PFAM: Malonyl-CoA decarboxylase; KEGG: azo:azo0623 putative malonyl-CoA decarboxylase; Malonyl-CoA decarboxylase 4124700..4126085 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405784 YP_003168803.1 CDS CAP2UW1_3617 NC_013194.1 4126138 4126611 D KEGG: azo:azo0692 probable lactoylglutathione lyase; putative lactoylglutathione lyase 4126138..4126611 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405785 YP_003168804.1 CDS CAP2UW1_3618 NC_013194.1 4127317 4128132 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sus:Acid_0646 IstB domain protein ATP-binding protein; IstB domain-containing protein ATP-binding protein complement(4127317..4128132) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405786 YP_003168805.1 CDS CAP2UW1_3619 NC_013194.1 4128125 4129399 R KEGG: sus:Acid_0647 hypothetical protein; hypothetical protein complement(4128125..4129399) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405787 YP_003168806.1 CDS CAP2UW1_3620 NC_013194.1 4129422 4130420 R PFAM: ParB domain protein nuclease; KEGG: sus:Acid_0648 ParB domain protein nuclease; ParB domain-containing protein nuclease complement(4129422..4130420) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405788 YP_003168807.1 CDS CAP2UW1_3621 NC_013194.1 4130504 4130941 R KEGG: mms:mma_3461 hypothetical protein; hypothetical protein complement(4130504..4130941) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405789 YP_003168808.1 CDS CAP2UW1_3622 NC_013194.1 4132049 4133050 D PFAM: protein of unknown function DUF344; KEGG: mgm:Mmc1_0146 protein of unknown function DUF344; hypothetical protein 4132049..4133050 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405790 YP_003168809.1 CDS CAP2UW1_3623 NC_013194.1 4133253 4133696 R KEGG: rpt:Rpal_3511 hypothetical protein; hypothetical protein complement(4133253..4133696) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405791 YP_003168810.1 CDS CAP2UW1_3624 NC_013194.1 4134011 4134475 R hypothetical protein complement(4134011..4134475) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405792 YP_003168811.1 CDS CAP2UW1_3625 NC_013194.1 4134645 4135136 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mag:amb0869 protein-tyrosine-phosphatase; protein tyrosine phosphatase complement(4134645..4135136) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405793 YP_003168812.1 CDS CAP2UW1_3626 NC_013194.1 4135162 4135695 R KEGG: mfa:Mfla_1466 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(4135162..4135695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405794 YP_003168813.1 CDS CAP2UW1_3627 NC_013194.1 4135688 4136431 R TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: dar:Daro_1738 5'-methylthioadenosine phosphorylase; methylthioadenosine phosphorylase complement(4135688..4136431) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405795 YP_003168814.1 CDS CAP2UW1_3628 NC_013194.1 4136433 4136981 R Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase complement(4136433..4136981) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405796 YP_003168815.1 CDS CAP2UW1_3629 NC_013194.1 4137064 4139091 R KEGG: dar:Daro_1734 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase complement(4137064..4139091) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405797 YP_003168816.1 CDS CAP2UW1_3630 NC_013194.1 4139107 4140393 R SMART: ZipA FtsZ-binding region; KEGG: dar:Daro_1733 probable ZipA related protein, possibly involved in cell division; ZipA FtsZ-binding region complement(4139107..4140393) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405798 YP_003168817.1 CDS CAP2UW1_3631 NC_013194.1 4140402 4143917 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: dar:Daro_1732 chromosome segregation protein SMC; chromosome segregation protein SMC complement(4140402..4143917) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405799 YP_003168818.1 CDS CAP2UW1_3632 NC_013194.1 4144110 4144529 D TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: tbd:Tbd_1227 7-cyano-7-deazaguanine reductase; 7-cyano-7-deazaguanine reductase 4144110..4144529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405800 YP_003168819.1 CDS CAP2UW1_3633 NC_013194.1 4144534 4145244 D TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: dar:Daro_1895 YgfB and YecA; yecA family protein 4144534..4145244 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405801 YP_003168820.1 CDS CAP2UW1_3634 NC_013194.1 4145281 4146192 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: nmu:Nmul_A1849 protein of unknown function DUF6; hypothetical protein complement(4145281..4146192) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405802 YP_003168821.1 CDS CAP2UW1_3635 NC_013194.1 4146266 4147459 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 4146266..4147459 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405803 YP_003168822.1 CDS CAP2UW1_3636 NC_013194.1 4147471 4148292 D KEGG: rso:RSc1393 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 4147471..4148292 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405804 YP_003168823.1 CDS CAP2UW1_3637 NC_013194.1 4148332 4149516 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: dar:Daro_1725 pilus retraction protein PilT; twitching motility protein 4148332..4149516 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405805 YP_003168824.1 CDS CAP2UW1_3638 NC_013194.1 4149530 4150696 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 4149530..4150696 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405806 YP_003168825.1 CDS CAP2UW1_3639 NC_013194.1 4150689 4151582 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 4150689..4151582 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405807 YP_003168826.1 CDS CAP2UW1_3640 NC_013194.1 4151618 4152247 D PFAM: lipolytic protein G-D-S-L family; KEGG: azo:azo2123 putative acyl-CoA thioesterase I; G-D-S-L family lipolytic protein 4151618..4152247 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405808 YP_003168827.1 CDS pepN NC_013194.1 4152324 4154972 D TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: dar:Daro_3676 peptidase M, neutral zinc metallopeptidase, zinc-binding site; aminopeptidase N 4152324..4154972 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405809 YP_003168828.1 CDS CAP2UW1_3644 NC_013194.1 4156554 4156967 D KEGG: mpt:Mpe_A1717 hypothetical protein; hypothetical protein 4156554..4156967 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405813 YP_003168829.1 CDS CAP2UW1_3645 NC_013194.1 4157089 4158177 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: mpt:Mpe_A1716 Ca2+:cation antiporter, CaCA family; CaCA family Na+/Ca+ antiporter 4157089..4158177 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405814 YP_003168830.1 CDS CAP2UW1_3646 NC_013194.1 4158352 4158819 D KEGG: mpt:Mpe_A1714 hypothetical protein; hypothetical protein 4158352..4158819 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405815 YP_003168831.1 CDS CAP2UW1_3647 NC_013194.1 4158846 4159328 R PFAM: protein of unknown function DUF456; KEGG: mpt:Mpe_A1010 hypothetical protein; hypothetical protein complement(4158846..4159328) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405816 YP_003168832.1 CDS CAP2UW1_3649 NC_013194.1 4160425 4161561 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dps:DP2126 hypothetical protein; diguanylate cyclase 4160425..4161561 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405818 YP_003168833.1 CDS CAP2UW1_3650 NC_013194.1 4162387 4163871 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: xau:Xaut_3747 protein of unknown function DUF1214; hypothetical protein 4162387..4163871 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405819 YP_003168834.1 CDS CAP2UW1_3651 NC_013194.1 4164845 4165183 D KEGG: dar:Daro_0587 hypothetical protein; hypothetical protein 4164845..4165183 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405820 YP_003168835.1 CDS CAP2UW1_3652 NC_013194.1 4165316 4165867 D PFAM: YaeQ family protein; KEGG: dar:Daro_1792 YaeQ; YaeQ family protein 4165316..4165867 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405821 YP_003168836.1 CDS CAP2UW1_3653 NC_013194.1 4166090 4167124 D hypothetical protein 4166090..4167124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405822 YP_003168837.1 CDS CAP2UW1_3654 NC_013194.1 4167438 4168169 R PFAM: protein of unknown function DUF62; KEGG: tbd:Tbd_0432 hypothetical protein; hypothetical protein complement(4167438..4168169) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405823 YP_003168838.1 CDS CAP2UW1_3655 NC_013194.1 4168223 4168846 R KEGG: aba:Acid345_4053 hypothetical protein; hypothetical protein complement(4168223..4168846) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405824 YP_003168839.1 CDS CAP2UW1_3656 NC_013194.1 4168851 4169591 R KEGG: eba:ebA7197 putative glycan acetyltransferase; hypothetical protein complement(4168851..4169591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405825 YP_003168840.1 CDS CAP2UW1_3657 NC_013194.1 4170039 4171133 D PFAM: Forkhead-associated protein; EAL domain protein; KEGG: hch:HCH_06590 FOG: EAL domain; diguanylate phosphodiesterase 4170039..4171133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405826 YP_003168841.1 CDS CAP2UW1_3658 NC_013194.1 4171257 4178018 R PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: amr:AM1_0812 hypothetical protein; SH3 type 3 domain-containing protein complement(4171257..4178018) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405827 YP_003168842.1 CDS CAP2UW1_3659 NC_013194.1 4178034 4181414 R KEGG: eli:ELI_09350 hypothetical protein; hypothetical protein complement(4178034..4181414) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405828 YP_003168843.1 CDS CAP2UW1_3660 NC_013194.1 4181417 4182730 R KEGG: eli:ELI_09345 hypothetical protein; hypothetical protein complement(4181417..4182730) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405829 YP_003168844.1 CDS CAP2UW1_3661 NC_013194.1 4182745 4184118 R KEGG: cre:CHLREDRAFT_6783 SNF2 superfamily protein Pfam: ResIII DEAD SNF2_N Helicase_C SSDP Collagen Vps54 DMP1 PROSITE: ALA_RICH GLN_RICH GLU_RICH GLY_RICH HELICASE_ATP_BIND_1 HELICASE_CTER; hypothetical protein complement(4182745..4184118) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405830 YP_003168845.1 CDS CAP2UW1_3662 NC_013194.1 4184133 4186292 R PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mjl:Mjls_0938 AAA ATPase, central domain protein; AAA ATPase central domain-containing protein complement(4184133..4186292) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405831 YP_003168846.1 CDS CAP2UW1_3663 NC_013194.1 4186285 4187748 R KEGG: lch:Lcho_3053 hypothetical protein; hypothetical protein complement(4186285..4187748) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405832 YP_003168847.1 CDS CAP2UW1_3664 NC_013194.1 4187745 4189883 R TIGRFAM: phage tail protein; KEGG: rsq:Rsph17025_4353 hypothetical protein; phage tail protein complement(4187745..4189883) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405833 YP_003168848.1 CDS CAP2UW1_3665 NC_013194.1 4189893 4192151 R KEGG: lch:Lcho_3046 hypothetical protein; hypothetical protein complement(4189893..4192151) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405834 YP_003168849.1 CDS CAP2UW1_3666 NC_013194.1 4192201 4192617 R PFAM: GPW/gp25 family protein; KEGG: rsq:Rsph17025_4351 hypothetical protein; GPW/gp25 family protein complement(4192201..4192617) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405835 YP_003168850.1 CDS CAP2UW1_3667 NC_013194.1 4192614 4194461 R KEGG: lch:Lcho_3044 hypothetical protein; hypothetical protein complement(4192614..4194461) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405836 YP_003168851.1 CDS CAP2UW1_3669 NC_013194.1 4196254 4196436 R hypothetical protein complement(4196254..4196436) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405838 YP_003168852.1 CDS CAP2UW1_3670 NC_013194.1 4196450 4197682 R KEGG: lch:Lcho_3040 hypothetical protein; hypothetical protein complement(4196450..4197682) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405839 YP_003168853.1 CDS CAP2UW1_3671 NC_013194.1 4197679 4198230 R TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: cja:CJA_3051 conserved hypothetical phage tail region protein subfamily; hypothetical protein complement(4197679..4198230) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405840 YP_003168854.1 CDS CAP2UW1_3672 NC_013194.1 4198238 4200241 R KEGG: sgr:SGR_2066 putative phage tail sheath protein; Phage tail sheath protein FI-like protein complement(4198238..4200241) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405841 YP_003168855.1 CDS CAP2UW1_3673 NC_013194.1 4200290 4200739 R TIGRFAM: conserved hypothetical phage tail protein; PFAM: conserved hypothetical protein; KEGG: mxa:MXAN_4495 hypothetical protein; hypothetical protein complement(4200290..4200739) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405842 YP_003168856.1 CDS CAP2UW1_3674 NC_013194.1 4200756 4202618 R PFAM: tail sheath protein; KEGG: eli:ELI_09285 phage tail sheath protein, putative; tail sheath protein complement(4200756..4202618) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405843 YP_003168857.1 CDS CAP2UW1_3675 NC_013194.1 4202709 4203644 R hypothetical protein complement(4202709..4203644) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405844 YP_003168858.1 CDS CAP2UW1_3676 NC_013194.1 4203641 4204264 R KEGG: lch:Lcho_3034 hypothetical protein; hypothetical protein complement(4203641..4204264) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405845 YP_003168859.1 CDS CAP2UW1_3677 NC_013194.1 4204593 4204853 R KEGG: cja:CJA_3057 hypothetical protein; hypothetical protein complement(4204593..4204853) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405846 YP_003168860.1 CDS CAP2UW1_3678 NC_013194.1 4204966 4205334 R PFAM: cytochrome c class I; KEGG: nar:Saro_3480 cytochrome c, class I; cytochrome c class I complement(4204966..4205334) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405847 YP_003168861.1 CDS CAP2UW1_3679 NC_013194.1 4205336 4205926 R KEGG: pol:Bpro_3389 hypothetical protein; hypothetical protein complement(4205336..4205926) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405848 YP_003168862.1 CDS CAP2UW1_3680 NC_013194.1 4206083 4207078 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_04233 sigma 54-dependent transcriptional activator; Fis family sigma-54 specific transcriptional regulator complement(4206083..4207078) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405849 YP_003168863.1 CDS CAP2UW1_3681 NC_013194.1 4207238 4209547 R KEGG: rrs:RoseRS_3993 PKD domain containing protein; hypothetical protein complement(4207238..4209547) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405850 YP_003168864.1 CDS CAP2UW1_3682 NC_013194.1 4209568 4210614 R KEGG: mxa:MXAN_2242 putative lipoprotein; hypothetical protein complement(4209568..4210614) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405851 YP_003168865.1 CDS CAP2UW1_3683 NC_013194.1 4210940 4212460 R KEGG: gur:Gura_1234 hypothetical protein; hypothetical protein complement(4210940..4212460) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405852 YP_003168866.1 CDS CAP2UW1_3684 NC_013194.1 4212457 4213359 R KEGG: sus:Acid_2941 hypothetical protein; hypothetical protein complement(4212457..4213359) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405853 YP_003168867.1 CDS CAP2UW1_3685 NC_013194.1 4213646 4214680 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 4213646..4214680 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405854 YP_003168868.1 CDS CAP2UW1_3686 NC_013194.1 4214677 4215267 D PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: rru:Rru_A2238 tripartite ATP-independent periplasmic transporter, DctQ component; Tripartite ATP-independent periplasmic transporter DctQ component 4214677..4215267 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405855 YP_003168869.1 CDS CAP2UW1_3687 NC_013194.1 4215270 4216559 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rru:Rru_A2237 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 4215270..4216559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405856 YP_003168870.1 CDS CAP2UW1_3688 NC_013194.1 4216695 4217000 D KEGG: mpt:Mpe_A1522 hypothetical protein; hypothetical protein 4216695..4217000 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405857 YP_003168871.1 CDS CAP2UW1_3689 NC_013194.1 4217167 4217748 D KEGG: eba:ebA3238 hypothetical protein; hypothetical protein 4217167..4217748 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405858 YP_003168872.1 CDS CAP2UW1_3690 NC_013194.1 4217760 4218971 D PFAM: conserved hypothetical protein; KEGG: eba:ebA3236 hypothetical protein; hypothetical protein 4217760..4218971 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405859 YP_003168873.1 CDS CAP2UW1_3691 NC_013194.1 4218994 4220166 D PFAM: UMUC domain protein DNA-repair protein; KEGG: mms:mma_3585 DNA-damage-inducible protein P; DNA-directed DNA polymerase 4218994..4220166 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405860 YP_003168874.1 CDS CAP2UW1_3692 NC_013194.1 4220246 4221010 R hypothetical protein complement(4220246..4221010) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405861 YP_003168875.1 CDS hppA NC_013194.1 4221565 4224075 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 4221565..4224075 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405862 YP_003168876.1 CDS CAP2UW1_3694 NC_013194.1 4224202 4224966 D hypothetical protein 4224202..4224966 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405863 YP_003168877.1 CDS CAP2UW1_3695 NC_013194.1 4225194 4236182 D PFAM: Hemolysin-type calcium-binding region; Haemolysin-type calcium binding domain protein; KEGG: psp:PSPPH_0815 calcium binding hemolysin protein, putative; Hemolysin-type calcium-binding domain-containing protein 4225194..4236182 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405864 YP_003168878.1 CDS CAP2UW1_3696 NC_013194.1 4236219 4236821 R PFAM: Methyltransferase type 11; KEGG: ote:Oter_3961 methyltransferase type 11; type 11 methyltransferase complement(4236219..4236821) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405865 YP_003168879.1 CDS CAP2UW1_3697 NC_013194.1 4236833 4238077 R PFAM: glycosyl transferase group 1; KEGG: pol:Bpro_4925 glycosyl transferase, group 1; group 1 glycosyl transferase complement(4236833..4238077) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405866 YP_003168880.1 CDS CAP2UW1_3698 NC_013194.1 4238277 4238702 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: glo:Glov_0386 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein 4238277..4238702 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405867 YP_003168881.1 CDS glyQ NC_013194.1 4238847 4239758 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 4238847..4239758 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405868 YP_003168882.1 CDS CAP2UW1_3700 NC_013194.1 4239755 4241827 D KEGG: eba:ebA1330 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 4239755..4241827 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405869 YP_003168883.1 CDS CAP2UW1_3701 NC_013194.1 4241824 4242360 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 4241824..4242360 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405870 YP_003168884.1 CDS CAP2UW1_3702 NC_013194.1 4242360 4243103 D PFAM: phospholipid/glycerol acyltransferase; KEGG: eba:ebA1327 phospholipid and glycerol acyltransferase; phospholipid/glycerol acyltransferase 4242360..4243103 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405871 YP_003168885.1 CDS CAP2UW1_3703 NC_013194.1 4243087 4243845 D PFAM: protein of unknown function DUF45; KEGG: dar:Daro_3538 protein of unknown function DUF45; hypothetical protein 4243087..4243845 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405872 YP_003168886.1 CDS CAP2UW1_3704 NC_013194.1 4243855 4244241 D KEGG: bvi:Bcep1808_2807 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 4243855..4244241 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405873 YP_003168887.1 CDS CAP2UW1_3705 NC_013194.1 4244334 4246295 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rca:Rcas_3915 alpha amylase catalytic region; alpha amylase catalytic subunit complement(4244334..4246295) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405874 YP_003168888.1 CDS CAP2UW1_3706 NC_013194.1 4246505 4246684 R hypothetical protein complement(4246505..4246684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405875 YP_003168889.1 CDS CAP2UW1_3708 NC_013194.1 4247795 4248781 D KEGG: reu:Reut_A2064 conserved hypothetical signal peptide protein; hypothetical protein 4247795..4248781 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405877 YP_003168890.1 CDS CAP2UW1_3709 NC_013194.1 4248778 4249524 D PFAM: polysaccharide deacetylase; KEGG: rme:Rmet_2067 polysaccharide deacetylase; polysaccharide deacetylase 4248778..4249524 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405878 YP_003168891.1 CDS CAP2UW1_3710 NC_013194.1 4249521 4250492 D PFAM: fatty acid hydroxylase; KEGG: rso:RSc1254 probable transmembrane protein; fatty acid hydroxylase 4249521..4250492 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405879 YP_003168892.1 CDS CAP2UW1_3711 NC_013194.1 4250518 4251045 D KEGG: scl:sce6063 hypothetical protein; hypothetical protein 4250518..4251045 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405880 YP_003168893.1 CDS CAP2UW1_3712 NC_013194.1 4251046 4251402 D KEGG: sgl:SG1350 protease 4; hypothetical protein 4251046..4251402 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405881 YP_003168894.1 CDS CAP2UW1_3713 NC_013194.1 4251532 4253154 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0013 ABC transporter related; ABC transporter 4251532..4253154 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405882 YP_003168895.1 CDS CAP2UW1_3714 NC_013194.1 4253281 4255203 D KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4253281..4255203 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405883 YP_003168896.1 CDS CAP2UW1_3715 NC_013194.1 4255335 4255985 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: mca:MCA0777 DNA binding response regulator, LuxR family; two component LuxR family transcriptional regulator 4255335..4255985 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405884 YP_003168897.1 CDS CAP2UW1_3716 NC_013194.1 4256027 4257814 R KEGG: ppd:Ppro_2714 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(4256027..4257814) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405885 YP_003168898.1 CDS CAP2UW1_3717 NC_013194.1 4258100 4258372 R hypothetical protein complement(4258100..4258372) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405886 YP_003168899.1 CDS CAP2UW1_3718 NC_013194.1 4258663 4259742 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azo:azo0455 putative cobalmin snthesis protein; cobalamin synthesis protein P47K complement(4258663..4259742) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405887 YP_003168900.1 CDS CAP2UW1_3719 NC_013194.1 4260084 4260596 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: pmj:P9211_00151 protein containing methionine sulfoxide reductase conserved domain; methionine-R-sulfoxide reductase 4260084..4260596 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405888 YP_003168901.1 CDS CAP2UW1_3720 NC_013194.1 4260593 4261210 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: pla:Plav_1523 peptide methionine sulfoxide reductase; peptide methionine sulfoxide reductase 4260593..4261210 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405889 YP_003168902.1 CDS CAP2UW1_3721 NC_013194.1 4261238 4262428 R SMART: PUA domain containing protein; KEGG: dar:Daro_0196 SAM-dependent methyltransferase; PUA domain-containing protein complement(4261238..4262428) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405890 YP_003168903.1 CDS CAP2UW1_3722 NC_013194.1 4262640 4262990 D KEGG: dar:Daro_0136 hypothetical protein; hypothetical protein 4262640..4262990 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405891 YP_003168904.1 CDS CAP2UW1_3723 NC_013194.1 4262993 4263628 D PFAM: electron transport protein SCO1/SenC; KEGG: dar:Daro_0135 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 4262993..4263628 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405892 YP_003168905.1 CDS CAP2UW1_3724 NC_013194.1 4263625 4264101 D KEGG: dar:Daro_4066 hypothetical protein; hypothetical protein 4263625..4264101 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405893 YP_003168906.1 CDS CAP2UW1_3725 NC_013194.1 4264256 4264387 R hypothetical protein complement(4264256..4264387) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405894 YP_003168907.1 CDS CAP2UW1_3726 NC_013194.1 4264474 4264578 R hypothetical protein complement(4264474..4264578) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405895 YP_003168908.1 CDS CAP2UW1_3727 NC_013194.1 4264874 4265602 D hypothetical protein 4264874..4265602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405896 YP_003168909.1 CDS CAP2UW1_3728 NC_013194.1 4265662 4266390 D hypothetical protein 4265662..4266390 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405897 YP_003168910.1 CDS CAP2UW1_3729 NC_013194.1 4266660 4268861 D PFAM: cyclic nucleotide-binding; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: dar:Daro_3904 cyclic nucleotide-binding:sulfate transporter/antisigma-factor antagonist STAS:xanthine/uracil/vitamin C permease:sulphate transporter; sulfate transporter 4266660..4268861 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405898 YP_003168911.1 CDS CAP2UW1_3731 NC_013194.1 4270746 4271171 D PFAM: UspA domain protein; KEGG: pol:Bpro_2222 UspA; UspA domain-containing protein 4270746..4271171 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405900 YP_003168912.1 CDS CAP2UW1_3732 NC_013194.1 4271808 4272470 D PFAM: protein of unknown function DUF47; KEGG: sse:Ssed_0369 protein of unknown function DUF47; hypothetical protein 4271808..4272470 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405901 YP_003168913.1 CDS CAP2UW1_3733 NC_013194.1 4272492 4273979 D PFAM: phosphate transporter; KEGG: sse:Ssed_0370 phosphate transporter; phosphate transporter 4272492..4273979 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405902 YP_003168914.1 CDS CAP2UW1_3734 NC_013194.1 4274372 4275232 D PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: dar:Daro_3451 protein of unknown function zinc binding 2; hypothetical protein 4274372..4275232 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405903 YP_003168915.1 CDS CAP2UW1_3735 NC_013194.1 4275245 4276102 D PFAM: Peptidase M23; KEGG: dar:Daro_3453 peptidase M23B; peptidase M23 4275245..4276102 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405904 YP_003168916.1 CDS CAP2UW1_3736 NC_013194.1 4276175 4276645 R PFAM: ferric-uptake regulator; KEGG: dar:Daro_0934 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(4276175..4276645) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405905 YP_003168917.1 CDS CAP2UW1_3737 NC_013194.1 4276829 4277311 D PFAM: SmpA/OmlA domain protein; KEGG: dar:Daro_0935 SmpA/OmlA; SmpA/OmlA domain-containing protein 4276829..4277311 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405906 YP_003168918.1 CDS CAP2UW1_3738 NC_013194.1 4277313 4278119 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 4277313..4278119 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405907 YP_003168919.1 CDS CAP2UW1_3740 NC_013194.1 4279437 4280576 D KEGG: tvo:TVN1411 predicted inactivated transposase; hypothetical protein 4279437..4280576 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405909 YP_003168920.1 CDS CAP2UW1_3741 NC_013194.1 4282162 4283310 D TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: dar:Daro_0938 carbamoyl-phosphate synthase small subunit; carbamoyl-phosphate synthase small subunit 4282162..4283310 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405910 YP_003168921.1 CDS CAP2UW1_3742 NC_013194.1 4283303 4286509 D TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: dar:Daro_0939 carbamoyl phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit 4283303..4286509 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405911 YP_003168922.1 CDS CAP2UW1_3743 NC_013194.1 4286579 4287055 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: dar:Daro_0940 prokaryotic transcription elongation factor GreA; transcription elongation factor GreA 4286579..4287055 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405912 YP_003168923.1 CDS CAP2UW1_3744 NC_013194.1 4287064 4287528 D KEGG: dar:Daro_0941 hypothetical protein; hypothetical protein 4287064..4287528 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405913 YP_003168924.1 CDS CAP2UW1_3745 NC_013194.1 4287573 4287932 R PFAM: protein of unknown function UPF0044; KEGG: dar:Daro_0942 hypothetical protein; hypothetical protein complement(4287573..4287932) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405914 YP_003168925.1 CDS CAP2UW1_3746 NC_013194.1 4287980 4288600 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: dar:Daro_0943 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 4287980..4288600 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405915 YP_003168926.1 CDS CAP2UW1_3747 NC_013194.1 4288731 4290605 D KEGG: dar:Daro_0944 FtsH peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 4288731..4290605 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405916 YP_003168927.1 CDS CAP2UW1_3748 NC_013194.1 4290652 4291479 D KEGG: dar:Daro_0945 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 4290652..4291479 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405917 YP_003168928.1 CDS glmM NC_013194.1 4291581 4292948 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 4291581..4292948 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405918 YP_003168929.1 CDS CAP2UW1_3750 NC_013194.1 4293024 4293293 R KEGG: mpt:Mpe_A1524 membrane protein; membrane protein complement(4293024..4293293) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405919 YP_003168930.1 CDS CAP2UW1_3751 NC_013194.1 4293294 4293434 R hypothetical protein complement(4293294..4293434) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405920 YP_003168931.1 CDS CAP2UW1_3752 NC_013194.1 4293446 4295485 R TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: dar:Daro_1637 Na+/solute symporter; SSS sodium solute transporter superfamily protein complement(4293446..4295485) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405921 YP_003168932.1 CDS CAP2UW1_3753 NC_013194.1 4295500 4296210 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tbd:Tbd_0089 exonuclease; Exonuclease RNase T and DNA polymerase III complement(4295500..4296210) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405922 YP_003168933.1 CDS CAP2UW1_3754 NC_013194.1 4296213 4298123 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: azo:azo2201 putative nucleotidyltransferase; putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase complement(4296213..4298123) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405923 YP_003168934.1 CDS CAP2UW1_3755 NC_013194.1 4298327 4300291 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(4298327..4300291) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405924 YP_003168935.1 CDS CAP2UW1_3756 NC_013194.1 4300562 4301110 D PFAM: conserved hypothetical protein; KEGG: dar:Daro_1628 hypothetical protein; hypothetical protein 4300562..4301110 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405925 YP_003168936.1 CDS CAP2UW1_3757 NC_013194.1 4301170 4302690 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: azo:azo2415 putative fumarate hydratase; hydro-lyase, Fe-S type, tartrate/fumarate subfamily subunit alpha 4301170..4302690 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405926 YP_003168937.1 CDS CAP2UW1_3758 NC_013194.1 4302755 4303099 D PFAM: Endoribonuclease L-PSP; KEGG: dar:Daro_3455 endoribonuclease L-PSP; Endoribonuclease L-PSP 4302755..4303099 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405927 YP_003168938.1 CDS CAP2UW1_3759 NC_013194.1 4303116 4303901 D KEGG: pmy:Pmen_1063 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 4303116..4303901 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405928 YP_003168939.1 CDS CAP2UW1_3760 NC_013194.1 4303898 4305217 D PFAM: HI0933 family protein; KEGG: reh:H16_A0973 predicted flavoprotein; hypothetical protein 4303898..4305217 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405929 YP_003168940.1 CDS CAP2UW1_3761 NC_013194.1 4305205 4306227 D KEGG: tbd:Tbd_0051 hypothetical protein; hypothetical protein 4305205..4306227 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405930 YP_003168941.1 CDS prfC NC_013194.1 4306436 4308058 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 4306436..4308058 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405931 YP_003168942.1 CDS CAP2UW1_3763 NC_013194.1 4308110 4308328 D KEGG: dar:Daro_2469 protein of unknown function DUF480; hypothetical protein 4308110..4308328 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405932 YP_003168943.1 CDS CAP2UW1_3764 NC_013194.1 4308454 4309980 D PFAM: Integrase catalytic region; KEGG: eba:ebA3777 transposase; integrase catalytic subunit 4308454..4309980 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405933 YP_003168944.1 CDS CAP2UW1_3765 NC_013194.1 4310036 4310839 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:ebA3781 transposition helper protein; IstB domain-containing protein ATP-binding protein 4310036..4310839 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405934 YP_003168945.1 CDS CAP2UW1_3766 NC_013194.1 4311167 4311655 D KEGG: ajs:Ajs_3392 protein of unknown function DUF480; hypothetical protein 4311167..4311655 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405935 YP_003168946.1 CDS CAP2UW1_3767 NC_013194.1 4311656 4312216 R PFAM: NUDIX hydrolase; KEGG: dar:Daro_0963 NUDIX hydrolase; NUDIX hydrolase complement(4311656..4312216) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405936 YP_003168947.1 CDS CAP2UW1_3768 NC_013194.1 4312279 4313766 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(4312279..4313766) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405937 YP_003168948.1 CDS CAP2UW1_3769 NC_013194.1 4313779 4315263 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(4313779..4315263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405938 YP_003168949.1 CDS CAP2UW1_3770 NC_013194.1 4315287 4317383 R KEGG: dar:Daro_0960 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(4315287..4317383) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405939 YP_003168950.1 CDS CAP2UW1_3771 NC_013194.1 4317386 4317691 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: eba:ebB168 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L complement(4317386..4317691) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405940 YP_003168951.1 CDS CAP2UW1_3772 NC_013194.1 4317779 4318381 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: dar:Daro_0958 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(4317779..4318381) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405941 YP_003168952.1 CDS CAP2UW1_3773 NC_013194.1 4318394 4318882 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(4318394..4318882) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405942 YP_003168953.1 CDS CAP2UW1_3774 NC_013194.1 4318893 4319945 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: dar:Daro_0956 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) complement(4318893..4319945) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405943 YP_003168954.1 CDS CAP2UW1_3775 NC_013194.1 4319942 4322269 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(4319942..4322269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405944 YP_003168955.1 CDS CAP2UW1_3776 NC_013194.1 4322281 4323609 R KEGG: dar:Daro_0954 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F complement(4322281..4323609) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405945 YP_003168956.1 CDS CAP2UW1_3777 NC_013194.1 4323609 4324082 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(4323609..4324082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405946 YP_003168957.1 CDS CAP2UW1_3778 NC_013194.1 4324082 4325335 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(4324082..4325335) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405947 YP_003168958.1 CDS CAP2UW1_3779 NC_013194.1 4325328 4325936 R KEGG: dar:Daro_0951 NADH dehydrogenase subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(4325328..4325936) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405948 YP_003168959.1 CDS CAP2UW1_3780 NC_013194.1 4325960 4326436 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(4325960..4326436) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405949 YP_003168960.1 CDS CAP2UW1_3781 NC_013194.1 4326440 4326814 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: dar:Daro_0949 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(4326440..4326814) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405950 YP_003168961.1 CDS secG NC_013194.1 4327026 4327397 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dar:Daro_0948 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(4327026..4327397) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405952 YP_003168962.1 CDS CAP2UW1_3783 NC_013194.1 4327572 4329032 R PFAM: metallophosphoesterase; KEGG: mgm:Mmc1_0230 hypothetical protein; metallophosphoesterase complement(4327572..4329032) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405953 YP_003168963.1 CDS CAP2UW1_3784 NC_013194.1 4329029 4329718 R KEGG: dps:DP2625 similar to serine/threonine protein phosphatase; serine/threonine protein phosphatase-like protein complement(4329029..4329718) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405954 YP_003168964.1 CDS CAP2UW1_3785 NC_013194.1 4329720 4330982 R PFAM: phosphate transporter; KEGG: mgm:Mmc1_0229 phosphate transporter; phosphate transporter complement(4329720..4330982) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405955 YP_003168965.1 CDS CAP2UW1_3786 NC_013194.1 4331096 4331779 R PFAM: protein of unknown function DUF47; KEGG: mgm:Mmc1_0228 protein of unknown function DUF47; hypothetical protein complement(4331096..4331779) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405956 YP_003168966.1 CDS CAP2UW1_3787 NC_013194.1 4332050 4332685 R PFAM: protein of unknown function DUF47; KEGG: bph:Bphy_0916 protein of unknown function DUF47; hypothetical protein complement(4332050..4332685) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405957 YP_003168967.1 CDS CAP2UW1_3788 NC_013194.1 4332792 4333805 R PFAM: phosphate transporter; KEGG: har:HEAR2156 low-affinity inorganic phosphate transporter; phosphate transporter complement(4332792..4333805) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405958 YP_003168968.1 CDS CAP2UW1_3789 NC_013194.1 4333819 4334457 R PFAM: protein of unknown function DUF47; KEGG: bph:Bphy_0916 protein of unknown function DUF47; hypothetical protein complement(4333819..4334457) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405959 YP_003168969.1 CDS CAP2UW1_3790 NC_013194.1 4334644 4335444 R KEGG: azo:azo0344 hypothetical protein; hypothetical protein complement(4334644..4335444) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405960 YP_003168970.1 CDS CAP2UW1_3791 NC_013194.1 4335441 4336103 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: azo:azo0343 probable ParA family protein; cobyrinic acid ac-diamide synthase complement(4335441..4336103) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405961 YP_003168971.1 CDS CAP2UW1_3792 NC_013194.1 4336389 4339103 R PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; KEGG: hau:Haur_1995 ATP-dependent transcriptional regulator, MalT-like, LuxR family; ATP-dependent transcriptional regulator, MalT-like, LuxR family complement(4336389..4339103) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405962 YP_003168972.1 CDS CAP2UW1_3793 NC_013194.1 4339106 4340002 R PFAM: phospholipid/glycerol acyltransferase; KEGG: rfr:Rfer_2744 phospholipid/glycerol acyltransferase; putative acyltransferase complement(4339106..4340002) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405963 YP_003168973.1 CDS CAP2UW1_3794 NC_013194.1 4340043 4340927 R PFAM: GTP-binding protein HSR1-related; KEGG: eba:ebA6197 GTP-binding protein; HSR1-like GTP-binding protein complement(4340043..4340927) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405964 YP_003168974.1 CDS CAP2UW1_3795 NC_013194.1 4341058 4341879 D KEGG: eba:ebA6193 hypothetical protein; hypothetical protein 4341058..4341879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405965 YP_003168975.1 CDS CAP2UW1_3796 NC_013194.1 4341941 4342258 D hypothetical protein 4341941..4342258 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405966 YP_003168976.1 CDS fliE NC_013194.1 4342371 4342694 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(4342371..4342694) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405967 YP_003168977.1 CDS CAP2UW1_3798 NC_013194.1 4342762 4344135 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: dar:Daro_0775 helix-turn-helix, fis-type; two component sigma-54 specific Fis family transcriptional regulator complement(4342762..4344135) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405968 YP_003168978.1 CDS CAP2UW1_3799 NC_013194.1 4344151 4345329 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dar:Daro_0774 ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase complement(4344151..4345329) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405969 YP_003168979.1 CDS fliF NC_013194.1 4345434 4347170 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 4345434..4347170 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405970 YP_003168980.1 CDS CAP2UW1_3801 NC_013194.1 4347160 4348158 D PFAM: flagellar motor switch protein FliG; KEGG: dar:Daro_0772 flagellar motor switch protein FliG; flagellar motor switch protein FliG 4347160..4348158 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405971 YP_003168981.1 CDS CAP2UW1_3802 NC_013194.1 4348172 4348906 D PFAM: flagellar assembly protein FliH; KEGG: dar:Daro_0771 flagellar assembly protein FliH; flagellar assembly protein FliH 4348172..4348906 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405972 YP_003168982.1 CDS CAP2UW1_3803 NC_013194.1 4348903 4350321 D KEGG: dar:Daro_0770 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 4348903..4350321 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405973 YP_003168983.1 CDS CAP2UW1_3804 NC_013194.1 4350379 4350825 D TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: azo:azo2720 putative flagellar protein FliJ; flagellar export protein FliJ 4350379..4350825 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405974 YP_003168984.1 CDS CAP2UW1_3805 NC_013194.1 4350890 4352059 D PFAM: flagellar hook-length control protein; KEGG: dar:Daro_0768 flagellar hook-length control protein; flagellar hook-length control protein 4350890..4352059 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405975 YP_003168985.1 CDS CAP2UW1_3806 NC_013194.1 4352147 4352695 D PFAM: flagellar basal body-associated protein FliL; KEGG: dar:Daro_0767 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 4352147..4352695 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405976 YP_003168986.1 CDS fliM NC_013194.1 4352702 4353706 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 4352702..4353706 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405977 YP_003168987.1 CDS CAP2UW1_3808 NC_013194.1 4353699 4354136 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dar:Daro_0765 type III secretion system outer membrane O protein; flagellar motor switch protein FliN 4353699..4354136 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405978 YP_003168988.1 CDS CAP2UW1_3809 NC_013194.1 4354279 4354728 D PFAM: flagellar biosynthesis protein FliO; KEGG: dar:Daro_0764 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein FliO 4354279..4354728 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405979 YP_003168989.1 CDS fliP NC_013194.1 4354715 4355467 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4354715..4355467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405980 YP_003168990.1 CDS CAP2UW1_3811 NC_013194.1 4355464 4355733 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: azo:azo2727 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ 4355464..4355733 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405981 YP_003168991.1 CDS CAP2UW1_3812 NC_013194.1 4355741 4356526 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dar:Daro_0761 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR 4355741..4356526 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405982 YP_003168992.1 CDS CAP2UW1_3813 NC_013194.1 4356523 4357053 R KEGG: dar:Daro_0760 hypothetical protein; hypothetical protein complement(4356523..4357053) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405983 YP_003168993.1 CDS CAP2UW1_3814 NC_013194.1 4357072 4358412 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mms:mma_1428 FlgL flagellar hook-associated proteins 3; flagellar hook-associated protein 3 complement(4357072..4358412) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405984 YP_003168994.1 CDS flgK NC_013194.1 4358423 4360468 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(4358423..4360468) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405985 YP_003168995.1 CDS CAP2UW1_3816 NC_013194.1 4360542 4361504 R KEGG: dar:Daro_0757 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(4360542..4361504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405986 YP_003168996.1 CDS CAP2UW1_3817 NC_013194.1 4361536 4362684 R PFAM: flagellar P-ring protein; KEGG: azo:azo2733 flagellar basal body P-ring protein; flagellar P-ring protein complement(4361536..4362684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405987 YP_003168997.1 CDS CAP2UW1_3818 NC_013194.1 4362697 4363386 R PFAM: flagellar L-ring protein; KEGG: dar:Daro_0755 flagellar L-ring protein; flagellar L-ring protein complement(4362697..4363386) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405988 YP_003168998.1 CDS CAP2UW1_3819 NC_013194.1 4363394 4364176 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0754 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG complement(4363394..4364176) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405989 YP_003168999.1 CDS CAP2UW1_3820 NC_013194.1 4364193 4364942 R TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0753 protein of unknown function DUF1078; flagellar basal-body rod protein FlgF complement(4364193..4364942) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405990 YP_003169000.1 CDS CAP2UW1_3821 NC_013194.1 4364978 4366231 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tbd:Tbd_1634 flagellar hook protein FlgE; hypothetical protein complement(4364978..4366231) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405991 YP_003169001.1 CDS CAP2UW1_3822 NC_013194.1 4366246 4366923 R PFAM: flagellar hook capping protein; KEGG: dar:Daro_0751 flagellar hook capping protein; flagellar hook capping protein complement(4366246..4366923) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405992 YP_003169002.1 CDS CAP2UW1_3823 NC_013194.1 4366944 4367348 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dar:Daro_0750 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(4366944..4367348) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405993 YP_003169003.1 CDS CAP2UW1_3824 NC_013194.1 4367351 4367761 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tbd:Tbd_1637 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB complement(4367351..4367761) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405994 YP_003169004.1 CDS CAP2UW1_3825 NC_013194.1 4368020 4368724 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: dar:Daro_0748 flagellar basal body P-ring biosynthesis protein FlgA; flagella basal body P-ring formation protein FlgA 4368020..4368724 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405995 YP_003169005.1 CDS CAP2UW1_3826 NC_013194.1 4368816 4369097 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: dar:Daro_0747 hypothetical protein; anti-sigma-28 factor FlgM 4368816..4369097 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405996 YP_003169006.1 CDS CAP2UW1_3827 NC_013194.1 4369112 4369588 D PFAM: FlgN family protein; KEGG: net:Neut_2438 FlgN family protein; FlgN family protein 4369112..4369588 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405997 YP_003169007.1 CDS CAP2UW1_3828 NC_013194.1 4369595 4370425 R Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD complement(4369595..4370425) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405998 YP_003169008.1 CDS motC NC_013194.1 4370429 4371154 R homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein complement(4370429..4371154) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405999 YP_003169009.1 CDS CAP2UW1_3830 NC_013194.1 4371162 4371908 R KEGG: dar:Daro_0743 sigma-70 region 4; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase, sigma 28 subunit, FliA/WhiG complement(4371162..4371908) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406000 YP_003169010.1 CDS CAP2UW1_3831 NC_013194.1 4371926 4372810 R KEGG: dar:Daro_0742 putative MinD-related protein; putative MinD-like protein complement(4371926..4372810) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406001 YP_003169011.1 CDS flhF NC_013194.1 4372803 4374179 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(4372803..4374179) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406002 YP_003169012.1 CDS flhA NC_013194.1 4374176 4376263 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(4374176..4376263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406003 YP_003169013.1 CDS flhB NC_013194.1 4376256 4377395 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(4376256..4377395) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406004 YP_003169014.1 CDS CAP2UW1_3835 NC_013194.1 4377570 4379486 R PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: dar:Daro_0738 CheW-like protein:ATP-binding region, ATPase-like:signal transducing histidine kinase, homodimeric:Hpt; CheA signal transduction histidine kinase complement(4377570..4379486) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406005 YP_003169015.1 CDS CAP2UW1_3836 NC_013194.1 4379496 4380371 R PFAM: Chemotaxis phosphatase CheZ; KEGG: dar:Daro_0737 chemotaxis regulator CheZ; chemotaxis phosphatase, CheZ complement(4379496..4380371) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406006 YP_003169016.1 CDS CAP2UW1_3837 NC_013194.1 4380373 4380762 R PFAM: response regulator receiver; KEGG: azo:azo1460 chemotaxis response regulator; response regulator receiver protein complement(4380373..4380762) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406007 YP_003169017.1 CDS CAP2UW1_3838 NC_013194.1 4380791 4381729 R PFAM: response regulator receiver; CheW domain protein; KEGG: dar:Daro_0735 response regulator receiver:CheW-like protein; response regulator receiver modulated CheW protein complement(4380791..4381729) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406008 YP_003169018.1 CDS CAP2UW1_3839 NC_013194.1 4381751 4382728 R PFAM: response regulator receiver; CheW domain protein; KEGG: dar:Daro_0734 response regulator receiver:CheW-like protein; response regulator receiver modulated CheW protein complement(4381751..4382728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406009 YP_003169019.1 CDS CAP2UW1_3840 NC_013194.1 4382841 4384538 R PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: azo:azo1457 methyl accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(4382841..4384538) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406010 YP_003169020.1 CDS CAP2UW1_3841 NC_013194.1 4384904 4385332 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(4384904..4385332) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406011 YP_003169021.1 CDS CAP2UW1_3842 NC_013194.1 4385426 4387375 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; KEGG: mfa:Mfla_0529 diguanylate cyclase (GGDEF domain); periplasmic/7TM domain sensor diguanylate cyclase complement(4385426..4387375) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406012 YP_003169022.1 CDS CAP2UW1_3843 NC_013194.1 4387413 4388000 D KEGG: dar:Daro_0062 biopolymer transport protein TolA; biopolymer transport protein TolA 4387413..4388000 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406013 YP_003169023.1 CDS CAP2UW1_3844 NC_013194.1 4388232 4389473 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dar:Daro_0202 hypothetical protein; anti-sigma-factor antagonist 4388232..4389473 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406014 YP_003169024.1 CDS CAP2UW1_3845 NC_013194.1 4389499 4390038 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 4389499..4390038 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406015 YP_003169025.1 CDS hslU NC_013194.1 4390038 4391369 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 4390038..4391369 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406016 YP_003169026.1 CDS CAP2UW1_3847 NC_013194.1 4391386 4391814 R PFAM: UspA domain protein; KEGG: net:Neut_2130 UspA domain protein; UspA domain-containing protein complement(4391386..4391814) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406017 YP_003169027.1 CDS CAP2UW1_3848 NC_013194.1 4391811 4392554 R PFAM: Integral membrane protein TerC; KEGG: eba:ebA3576 predicted integral membrane protein TerC family; Integral membrane protein TerC complement(4391811..4392554) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406018 YP_003169028.1 CDS CAP2UW1_3849 NC_013194.1 4392616 4392792 R hypothetical protein complement(4392616..4392792) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406019 YP_003169029.1 CDS CAP2UW1_3850 NC_013194.1 4392792 4394390 R Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase complement(4392792..4394390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406020 YP_003169030.1 CDS CAP2UW1_3851 NC_013194.1 4394507 4395427 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: dar:Daro_3100 transcriptional regulator, LysR family; LysR family transcriptional regulator 4394507..4395427 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406021 YP_003169031.1 CDS CAP2UW1_3852 NC_013194.1 4395471 4395671 R KEGG: bwe:BcerKBAB4_1175 HNH endonuclease; hypothetical protein complement(4395471..4395671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406022 YP_003169032.1 CDS CAP2UW1_3853 NC_013194.1 4396534 4399446 R PFAM: histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; KEGG: rme:Rmet_3876 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(4396534..4399446) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406023 YP_003169033.1 CDS CAP2UW1_3854 NC_013194.1 4399572 4400870 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: dar:Daro_3098 isocitrate lyase; isocitrate lyase complement(4399572..4400870) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406024 YP_003169034.1 CDS CAP2UW1_3855 NC_013194.1 4401010 4401108 R hypothetical protein complement(4401010..4401108) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406025 YP_003169035.1 CDS CAP2UW1_3856 NC_013194.1 4401125 4402078 R KEGG: gur:Gura_3178 hypothetical protein; hypothetical protein complement(4401125..4402078) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406026 YP_003169036.1 CDS CAP2UW1_3857 NC_013194.1 4402544 4402975 D PFAM: ferric-uptake regulator; KEGG: eba:ebA1809 ferric uptake regulator; Fur family ferric uptake regulator 4402544..4402975 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406027 YP_003169037.1 CDS CAP2UW1_3858 NC_013194.1 4403070 4403771 D PFAM: protein of unknown function DUF218; KEGG: swo:Swol_0732 hypothetical protein; hypothetical protein 4403070..4403771 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406028 YP_003169038.1 CDS CAP2UW1_3859 NC_013194.1 4403851 4404144 R PFAM: acylphosphatase; KEGG: azo:azo3205 conserved hypothetical acylphosphatase; acylphosphatase complement(4403851..4404144) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406029 YP_003169039.1 CDS CAP2UW1_3860 NC_013194.1 4404234 4405748 D KEGG: dar:Daro_0564 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 4404234..4405748 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406030 YP_003169040.1 CDS CAP2UW1_3861 NC_013194.1 4405764 4409006 D KEGG: dar:Daro_0565 hypothetical protein; hypothetical protein 4405764..4409006 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406031 YP_003169041.1 CDS CAP2UW1_3862 NC_013194.1 4409003 4410589 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: dar:Daro_0566 NADH-ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal:NADH/ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 4409003..4410589 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406032 YP_003169042.1 CDS CAP2UW1_3863 NC_013194.1 4410586 4412085 D KEGG: dar:Daro_0567 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 4410586..4412085 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406033 YP_003169043.1 CDS CAP2UW1_3864 NC_013194.1 4412078 4413577 D KEGG: dar:Daro_0568 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 4412078..4413577 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406034 YP_003169044.1 CDS CAP2UW1_3865 NC_013194.1 4413944 4414807 R PFAM: protein of unknown function DUF955; KEGG: mpt:Mpe_A2374 hypothetical protein; hypothetical protein complement(4413944..4414807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406035 YP_003169045.1 CDS CAP2UW1_3866 NC_013194.1 4414804 4415130 R PFAM: helix-turn-helix domain protein; KEGG: mpt:Mpe_A2373 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4414804..4415130) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406036 YP_003169046.1 CDS CAP2UW1_3867 NC_013194.1 4415296 4416261 D KEGG: mpt:Mpe_A2372 hypothetical protein; hypothetical protein 4415296..4416261 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406037 YP_003169047.1 CDS CAP2UW1_3868 NC_013194.1 4416267 4416782 D KEGG: mpt:Mpe_A2371 hypothetical protein; hypothetical protein 4416267..4416782 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406038 YP_003169048.1 CDS CAP2UW1_3869 NC_013194.1 4416782 4417714 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mpt:Mpe_A2370 AAA+ class ATPase; AAA ATPase central domain-containing protein 4416782..4417714 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406039 YP_003169049.1 CDS CAP2UW1_3870 NC_013194.1 4417768 4419282 D KEGG: mes:Meso_4407 hypothetical protein; hypothetical protein 4417768..4419282 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406040 YP_003169050.1 CDS CAP2UW1_3871 NC_013194.1 4419364 4420671 R KEGG: shn:Shewana3_1248 hypothetical protein; hypothetical protein complement(4419364..4420671) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406041 YP_003169051.1 CDS CAP2UW1_3872 NC_013194.1 4420714 4421361 R KEGG: amr:AM1_A0238 hypothetical protein; hypothetical protein complement(4420714..4421361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406042 YP_003169052.1 CDS CAP2UW1_3873 NC_013194.1 4421371 4421592 R KEGG: mta:Moth_2333 protein of unknown function DUF132; hypothetical protein complement(4421371..4421592) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406043 YP_003169053.1 CDS CAP2UW1_3874 NC_013194.1 4421573 4421824 R hypothetical protein complement(4421573..4421824) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406044 YP_003169054.1 CDS CAP2UW1_3875 NC_013194.1 4422155 4422340 D hypothetical protein 4422155..4422340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406045 YP_003169055.1 CDS CAP2UW1_3876 NC_013194.1 4422649 4423602 D KEGG: gur:Gura_3178 hypothetical protein; hypothetical protein 4422649..4423602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406046 YP_003169056.1 CDS CAP2UW1_3877 NC_013194.1 4423617 4426004 D PFAM: Peptidase C13, legumain asparaginyl peptidase; KEGG: azo:azo1258 hypothetical membrane protein; peptidase C13, legumain asparaginyl peptidase 4423617..4426004 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406047 YP_003169057.1 CDS CAP2UW1_3878 NC_013194.1 4426236 4426538 D hypothetical protein 4426236..4426538 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406048 YP_003169058.1 CDS CAP2UW1_3879 NC_013194.1 4426611 4429991 R PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: azo:azo1604 hypothetical protein; transglutaminase domain-containing protein complement(4426611..4429991) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406049 YP_003169059.1 CDS CAP2UW1_3880 NC_013194.1 4430120 4432720 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(4430120..4432720) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406050 YP_003169060.1 CDS CAP2UW1_3881 NC_013194.1 4432717 4433145 R KEGG: azo:azo3214 hypothetical protein; hypothetical protein complement(4432717..4433145) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406051 YP_003169061.1 CDS CAP2UW1_3882 NC_013194.1 4433666 4435000 D KEGG: dar:Daro_2860 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 4433666..4435000 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406052 YP_003169062.1 CDS CAP2UW1_3883 NC_013194.1 4435061 4435948 R PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_0840 hypothetical protein; putative signal transduction protein complement(4435061..4435948) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406053 YP_003169063.1 CDS CAP2UW1_3884 NC_013194.1 4436135 4437382 R PFAM: RNA-binding S4 domain protein; KEGG: mfa:Mfla_2529 pseudouridine synthase, Rsu; RNA-binding S4 domain-containing protein complement(4436135..4437382) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406054 YP_003169064.1 CDS CAP2UW1_3885 NC_013194.1 4437554 4438093 R KEGG: bch:Bcen2424_5476 hypothetical protein; hypothetical protein complement(4437554..4438093) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406055 YP_003169065.1 CDS CAP2UW1_3886 NC_013194.1 4438569 4440524 D KEGG: mta:Moth_0823 protein of unknown function DUF342; polymerase most-like protein contain PALM domain HD hydrolase domain and Zn-ribbon domain 4438569..4440524 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406056 YP_003169066.1 CDS CAP2UW1_3887 NC_013194.1 4440591 4443173 R catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase complement(4440591..4443173) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406057 YP_003169067.1 CDS CAP2UW1_3888 NC_013194.1 4443245 4445416 R TIGRFAM: cyanophycin synthetase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Mur ligase middle domain protein; RimK domain protein ATP-grasp; KEGG: bbr:BB3584 cyanophycin synthetase; cyanophycin synthetase complement(4443245..4445416) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406058 YP_003169068.1 CDS CAP2UW1_3889 NC_013194.1 4445562 4446035 R PFAM: Domain of unknown function DUF1854; KEGG: nmu:Nmul_A2253 hypothetical protein; hypothetical protein complement(4445562..4446035) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406059 YP_003169069.1 CDS CAP2UW1_3890 NC_013194.1 4446032 4448260 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A2254 ABC transporter related; ABC transporter complement(4446032..4448260) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406060 YP_003169070.1 CDS CAP2UW1_3891 NC_013194.1 4448481 4449236 R KEGG: dar:Daro_0836 hypothetical protein; hypothetical protein complement(4448481..4449236) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406061 YP_003169071.1 CDS CAP2UW1_3892 NC_013194.1 4449449 4450324 D PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mgm:Mmc1_3142 adenylate/guanylate cyclase; adenylate/guanylate cyclase 4449449..4450324 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406062 YP_003169072.1 CDS CAP2UW1_3893 NC_013194.1 4450391 4452919 R KEGG: afw:Anae109_3304 non-specific serine/threonine protein kinase; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase complement(4450391..4452919) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406063 YP_003169073.1 CDS CAP2UW1_3894 NC_013194.1 4453022 4455346 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: dar:Daro_2744 RNA binding S1; RNA-binding S1 domain-containing protein complement(4453022..4455346) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406064 YP_003169074.1 CDS thrH NC_013194.1 4455545 4456162 D catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase 4455545..4456162 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406065 YP_003169075.1 CDS purU NC_013194.1 4456175 4457044 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4456175..4457044 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406066 YP_003169076.1 CDS CAP2UW1_3897 NC_013194.1 4457126 4459075 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2351 ABC transpoter ATPase; ABC transporter 4457126..4459075 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406067 YP_003169077.1 CDS CAP2UW1_3898 NC_013194.1 4459118 4459537 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: wsu:WS1527 hypothetical protein-hemerythrin; hemerythrin-like metal-binding protein 4459118..4459537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406068 YP_003169078.1 CDS CAP2UW1_3899 NC_013194.1 4459855 4461576 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: amr:AM1_0522 diguanylate cyclase/phosphodiesterase, putative; diguanylate cyclase 4459855..4461576 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406069 YP_003169079.1 CDS CAP2UW1_3900 NC_013194.1 4461677 4462456 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4032 ABC transporter related; ABC transporter complement(4461677..4462456) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406070 YP_003169080.1 CDS CAP2UW1_3901 NC_013194.1 4462458 4463447 R PFAM: transport system permease protein; KEGG: dar:Daro_4031 transport system permease protein; transport system permease complement(4462458..4463447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406071 YP_003169081.1 CDS CAP2UW1_3902 NC_013194.1 4463456 4465327 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mfa:Mfla_0122 TonB-dependent receptor; TonB-dependent receptor complement(4463456..4465327) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406072 YP_003169082.1 CDS CAP2UW1_3903 NC_013194.1 4465817 4466017 D KEGG: tbd:Tbd_2722 hypothetical protein; hypothetical protein 4465817..4466017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406073 YP_003169083.1 CDS CAP2UW1_3904 NC_013194.1 4466032 4466376 D PFAM: protein of unknown function DUF710; KEGG: dar:Daro_4027 cell division protein ZapA; hypothetical protein 4466032..4466376 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406074 YP_003169084.1 CDS CAP2UW1_3905 NC_013194.1 4466978 4467226 D PFAM: NapD family protein; KEGG: sbm:Shew185_0825 NapD family protein; NapD family protein 4466978..4467226 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406076 YP_003169085.1 CDS CAP2UW1_3906 NC_013194.1 4467228 4469753 D periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 4467228..4469753 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406077 YP_003169086.1 CDS napG NC_013194.1 4469842 4470780 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 4469842..4470780 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406078 YP_003169087.1 CDS napH NC_013194.1 4470777 4471679 D part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 4470777..4471679 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406079 YP_003169088.1 CDS CAP2UW1_3909 NC_013194.1 4471725 4472192 D PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: azo:azo3939 probable diheme cytochrome c; Nitrate reductase cytochrome c-type subunit (NapB) 4471725..4472192 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406080 YP_003169089.1 CDS CAP2UW1_3910 NC_013194.1 4472257 4475091 R PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine-binding; KEGG: reh:H16_B2100 two domain protein: acyl-CoA synthetase (AMP-forming) and acytransferase; AMP-dependent synthetase and ligase complement(4472257..4475091) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406081 YP_003169090.1 CDS CAP2UW1_3911 NC_013194.1 4475155 4475643 R TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo3944 probable ferredoxin-type protein NapF; ferredoxin-type protein NapF complement(4475155..4475643) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406082 YP_003169091.1 CDS CAP2UW1_3912 NC_013194.1 4475671 4476342 R TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: pmy:Pmen_1752 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase complement(4475671..4476342) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406083 YP_003169092.1 CDS CAP2UW1_3913 NC_013194.1 4476464 4478635 R KEGG: dar:Daro_2972 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R complement(4476464..4478635) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406084 YP_003169093.1 CDS CAP2UW1_3914 NC_013194.1 4479209 4480762 D PFAM: carboxyl transferase; KEGG: rru:Rru_A0051 carboxyl transferase; carboxyl transferase 4479209..4480762 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406086 YP_003169094.1 CDS CAP2UW1_3915 NC_013194.1 4480787 4481116 D hypothetical protein 4480787..4481116 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406087 YP_003169095.1 CDS CAP2UW1_3916 NC_013194.1 4481129 4481527 D PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rru:Rru_A0049 biotin/lipoyl attachment; biotin/lipoyl attachment domain-containing protein 4481129..4481527 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406088 YP_003169096.1 CDS CAP2UW1_3917 NC_013194.1 4481622 4482827 D TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: sat:SYN_00115 Na+-transporting decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 4481622..4482827 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406089 YP_003169097.1 CDS CAP2UW1_3918 NC_013194.1 4482990 4483565 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: eba:ebA4732 predicted polyhydroxyalkanoate synthesis repressor PhaR; polyhydroxyalkonate synthesis repressor, PhaR complement(4482990..4483565) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406090 YP_003169098.1 CDS CAP2UW1_3919 NC_013194.1 4483707 4484450 R TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dar:Daro_1610 acetoacetyl-CoA reductase; acetoacetyl-CoA reductase complement(4483707..4484450) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406091 YP_003169099.1 CDS CAP2UW1_3920 NC_013194.1 4484684 4484899 D KEGG: azo:azo1020 hypothetical protein; hypothetical protein 4484684..4484899 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406092 YP_003169100.1 CDS CAP2UW1_3921 NC_013194.1 4484900 4485730 R PFAM: protein of unknown function DUF152; KEGG: cvi:CV_2191 hypothetical protein; hypothetical protein complement(4484900..4485730) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406093 YP_003169101.1 CDS CAP2UW1_3922 NC_013194.1 4485708 4486835 R KEGG: eba:ebA4725 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(4485708..4486835) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406094 YP_003169102.1 CDS CAP2UW1_3923 NC_013194.1 4486837 4487631 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: dar:Daro_1603 putative competence lipoprotein precursor; outer membrane assembly lipoprotein YfiO 4486837..4487631 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406095 YP_003169103.1 CDS CAP2UW1_3924 NC_013194.1 4487699 4490146 R PFAM: Metal-dependent hydrolase HDOD; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: dar:Daro_1602 protein kinase:GAF; serine/threonine protein kinase complement(4487699..4490146) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406096 YP_003169104.1 CDS CAP2UW1_3925 NC_013194.1 4490221 4491567 R PFAM: protein of unknown function DUF195; KEGG: dar:Daro_1600 protein of unknown function DUF195; hypothetical protein complement(4490221..4491567) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406097 YP_003169105.1 CDS CAP2UW1_3926 NC_013194.1 4491623 4494952 R PFAM: protein of unknown function DUF748; KEGG: dar:Daro_1599 protein of unknown function DUF748; hypothetical protein complement(4491623..4494952) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406098 YP_003169106.1 CDS CAP2UW1_3927 NC_013194.1 4495291 4495707 D PFAM: response regulator receiver; KEGG: dar:Daro_1596 response regulator receiver; response regulator receiver protein 4495291..4495707 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406099 YP_003169107.1 CDS CAP2UW1_3928 NC_013194.1 4495778 4496539 R KEGG: dar:Daro_1595 beta-lactamase-like; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase complement(4495778..4496539) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406100 YP_003169108.1 CDS CAP2UW1_3929 NC_013194.1 4496567 4497292 D PFAM: Methyltransferase type 11; KEGG: dar:Daro_1594 generic methyl-transferase; type 11 methyltransferase 4496567..4497292 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406101 YP_003169109.1 CDS CAP2UW1_3930 NC_013194.1 4497282 4497764 D PFAM: ribonuclease H; KEGG: dar:Daro_1593 ribonuclease H; Ribonuclease H 4497282..4497764 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406102 YP_003169110.1 CDS CAP2UW1_3931 NC_013194.1 4497821 4498537 D KEGG: dar:Daro_1592 DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4497821..4498537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406103 YP_003169111.1 CDS CAP2UW1_3932 NC_013194.1 4498513 4499841 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: dar:Daro_2908 periplasmic copper-binding; periplasmic copper-binding protein 4498513..4499841 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406104 YP_003169112.1 CDS CAP2UW1_3934 NC_013194.1 4500494 4500778 R KEGG: dar:Daro_1798 hypothetical protein; hypothetical protein complement(4500494..4500778) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406106 YP_003169113.1 CDS CAP2UW1_3935 NC_013194.1 4500902 4501105 R PFAM: SlyX family protein; KEGG: azo:azo1250 conserved hypotheitcal protein; SlyX family protein complement(4500902..4501105) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406107 YP_003169114.1 CDS CAP2UW1_3936 NC_013194.1 4501442 4501879 R PFAM: YiaAB two helix domain protein; KEGG: bam:Bamb_0668 YiaAB two helix domain protein; YiaAB two helix domain-containing protein complement(4501442..4501879) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406108 YP_003169115.1 CDS CAP2UW1_3937 NC_013194.1 4502068 4502925 R PFAM: extracellular solute-binding protein family 3; KEGG: xau:Xaut_4035 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(4502068..4502925) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406109 YP_003169116.1 CDS CAP2UW1_3938 NC_013194.1 4503185 4504273 R PFAM: sodium/calcium exchanger membrane region; KEGG: bph:Bphy_3245 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region complement(4503185..4504273) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406110 YP_003169117.1 CDS CAP2UW1_3939 NC_013194.1 4504712 4505338 R hypothetical protein complement(4504712..4505338) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406111 YP_003169118.1 CDS CAP2UW1_3940 NC_013194.1 4505546 4505728 R hypothetical protein complement(4505546..4505728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406112 YP_003169119.1 CDS CAP2UW1_3942 NC_013194.1 4506194 4507333 R KEGG: tvo:TVN1411 predicted inactivated transposase; hypothetical protein complement(4506194..4507333) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406114 YP_003169120.1 CDS CAP2UW1_3943 NC_013194.1 4507411 4507530 R hypothetical protein complement(4507411..4507530) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406115 YP_003169121.1 CDS CAP2UW1_3945 NC_013194.1 4507963 4508700 D PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: vei:Veis_0367 threonyl/alanyl tRNA synthetase, SAD; Threonyl/alanyl tRNA synthetase SAD 4507963..4508700 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406117 YP_003169122.1 CDS CAP2UW1_3946 NC_013194.1 4509135 4509368 D hypothetical protein 4509135..4509368 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406118 YP_003169123.1 CDS CAP2UW1_3947 NC_013194.1 4509365 4512133 D KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4509365..4512133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406119 YP_003169124.1 CDS CAP2UW1_3949 NC_013194.1 4512458 4512739 R KEGG: dar:Daro_0497 hypothetical protein; hypothetical protein complement(4512458..4512739) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406121 YP_003169125.1 CDS CAP2UW1_3950 NC_013194.1 4512815 4513090 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebA2310 conserved hypothetical protein, predicted prevent-host-death family protein; prevent-host-death family protein 4512815..4513090 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406122 YP_003169126.1 CDS CAP2UW1_3951 NC_013194.1 4513090 4513431 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: eba:ebB67 plasmid stabilization system protein; RelE/StbE family addiction module toxin 4513090..4513431 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406123 YP_003169127.1 CDS CAP2UW1_3952 NC_013194.1 4513753 4514190 R KEGG: dar:Daro_0497 hypothetical protein; hypothetical protein complement(4513753..4514190) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406124 YP_003169128.1 CDS CAP2UW1_3953 NC_013194.1 4514187 4514972 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_0496 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(4514187..4514972) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406125 YP_003169129.1 CDS CAP2UW1_3954 NC_013194.1 4514977 4515519 R KEGG: dar:Daro_0495 lipoprotein, putative; lipoprotein complement(4514977..4515519) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406126 YP_003169130.1 CDS CAP2UW1_3955 NC_013194.1 4515516 4516796 R PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_0494 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(4515516..4516796) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406127 YP_003169131.1 CDS CAP2UW1_3956 NC_013194.1 4516799 4517323 R KEGG: azo:azo3312 conserved hypothetical secreted protein; hypothetical protein complement(4516799..4517323) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406128 YP_003169132.1 CDS CAP2UW1_3957 NC_013194.1 4517320 4518582 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase complement(4517320..4518582) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406129 YP_003169133.1 CDS CAP2UW1_3958 NC_013194.1 4518579 4519361 R PFAM: protein of unknown function DUF1365; KEGG: dar:Daro_0491 protein of unknown function DUF1365; hypothetical protein complement(4518579..4519361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406130 YP_003169134.1 CDS CAP2UW1_3959 NC_013194.1 4519358 4520698 R PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_0490 amine oxidase:FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(4519358..4520698) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406131 YP_003169135.1 CDS CAP2UW1_3960 NC_013194.1 4520716 4521516 R PFAM: protein of unknown function DUF198; KEGG: dar:Daro_0489 GTP cyclohydrolase; hypothetical protein complement(4520716..4521516) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406132 YP_003169136.1 CDS CAP2UW1_3961 NC_013194.1 4521593 4522345 R PFAM: glutathione peroxidase; KEGG: dar:Daro_0488 glutathione peroxidase; glutathione peroxidase complement(4521593..4522345) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406133 YP_003169137.1 CDS CAP2UW1_3962 NC_013194.1 4523129 4523470 R KEGG: mca:MCA0944 hypothetical protein; hypothetical protein complement(4523129..4523470) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406134 YP_003169138.1 CDS CAP2UW1_3963 NC_013194.1 4523513 4524013 R KEGG: dar:Daro_1829 putative lipoprotein involved in nitrous oxide reduction; putative lipoprotein involved in nitrous oxide reduction complement(4523513..4524013) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406135 YP_003169139.1 CDS CAP2UW1_3964 NC_013194.1 4524028 4524636 R KEGG: dar:Daro_1830 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(4524028..4524636) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406136 YP_003169140.1 CDS CAP2UW1_3966 NC_013194.1 4525494 4525910 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nmu:Nmul_A1047 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR complement(4525494..4525910) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406138 YP_003169141.1 CDS CAP2UW1_3967 NC_013194.1 4525914 4526633 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: tbd:Tbd_0911 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel complement(4525914..4526633) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406139 YP_003169142.1 CDS CAP2UW1_3968 NC_013194.1 4526637 4527269 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: nmu:Nmul_A1049 TonB-like; TonB family protein complement(4526637..4527269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406140 YP_003169143.1 CDS CAP2UW1_3969 NC_013194.1 4527323 4528807 R PFAM: PepSY-associated TM helix domain protein; KEGG: pau:PA14_05650 hypothetical protein; PepSY-associated TM helix domain-containing protein complement(4527323..4528807) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406141 YP_003169144.1 CDS CAP2UW1_3970 NC_013194.1 4528833 4531034 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pfl:PFL_4063 outer membrane ferric siderophore receptor; TonB-dependent siderophore receptor complement(4528833..4531034) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406142 YP_003169145.1 CDS CAP2UW1_3971 NC_013194.1 4531243 4532049 D KEGG: gvi:glr1760 hypothetical protein; Co2+ ABC transporter periplasmic component-like protein 4531243..4532049 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406143 YP_003169146.1 CDS CAP2UW1_3972 NC_013194.1 4532623 4533780 R PFAM: putative transposase; KEGG: pol:Bpro_4833 putative transposase; putative transposase complement(4532623..4533780) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406144 YP_003169147.1 CDS CAP2UW1_3973 NC_013194.1 4533791 4534639 R PFAM: integrase family protein; KEGG: pol:Bpro_1585 phage integrase; integrase family protein complement(4533791..4534639) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406145 YP_003169148.1 CDS CAP2UW1_3974 NC_013194.1 4534826 4535332 R KEGG: dar:Daro_1830 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal protein complement(4534826..4535332) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406146 YP_003169149.1 CDS CAP2UW1_3975 NC_013194.1 4535462 4536142 R KEGG: dar:Daro_1831 hypothetical protein; hypothetical protein complement(4535462..4536142) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406147 YP_003169150.1 CDS CAP2UW1_3976 NC_013194.1 4536167 4538608 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_1836 ATPase, E1-E2 type:copper-translocating P-type ATPase:heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase complement(4536167..4538608) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406148 YP_003169151.1 CDS CAP2UW1_3977 NC_013194.1 4538605 4539258 R KEGG: dar:Daro_1837 hypothetical protein; hypothetical protein complement(4538605..4539258) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406149 YP_003169152.1 CDS CAP2UW1_3978 NC_013194.1 4539287 4539655 R KEGG: dar:Daro_1838 hypothetical protein; hypothetical protein complement(4539287..4539655) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406150 YP_003169153.1 CDS CAP2UW1_3979 NC_013194.1 4539679 4539861 R KEGG: mca:MCA0802 hypothetical protein; hypothetical protein complement(4539679..4539861) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406151 YP_003169154.1 CDS CAP2UW1_3980 NC_013194.1 4539858 4540361 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_1839 cytochrome c biogenesis protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(4539858..4540361) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406152 YP_003169155.1 CDS CAP2UW1_3981 NC_013194.1 4540363 4541364 R KEGG: dar:Daro_1840 hypothetical protein; hypothetical protein complement(4540363..4541364) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406153 YP_003169156.1 CDS CAP2UW1_3982 NC_013194.1 4541361 4542059 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1841 ABC transporter related; ABC transporter complement(4541361..4542059) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406154 YP_003169157.1 CDS CAP2UW1_3983 NC_013194.1 4542067 4543203 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_1842 protein of unknown function DUF214; hypothetical protein complement(4542067..4543203) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406155 YP_003169158.1 CDS CAP2UW1_3984 NC_013194.1 4543166 4543504 R KEGG: mag:amb2918 hypothetical protein; hypothetical protein complement(4543166..4543504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406156 YP_003169159.1 CDS CAP2UW1_3985 NC_013194.1 4543537 4543719 R KEGG: dar:Daro_1845 hypothetical protein; hypothetical protein complement(4543537..4543719) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406157 YP_003169160.1 CDS CAP2UW1_3986 NC_013194.1 4544024 4545511 D KEGG: tbd:Tbd_1838 hypothetical protein; hypothetical protein 4544024..4545511 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406158 YP_003169161.1 CDS CAP2UW1_3987 NC_013194.1 4545637 4546101 D Inhibits transcription at high concentrations of nickel; nickel responsive regulator 4545637..4546101 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406159 YP_003169162.1 CDS CAP2UW1_3988 NC_013194.1 4546338 4548248 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nmu:Nmul_A0973 TonB-dependent receptor; TonB-dependent receptor plug 4546338..4548248 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406160 YP_003169163.1 CDS CAP2UW1_3989 NC_013194.1 4548251 4548886 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hau:Haur_2097 ABC transporter related; ABC transporter 4548251..4548886 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406161 YP_003169164.1 CDS CAP2UW1_3990 NC_013194.1 4548883 4549689 D PFAM: ABC-3 protein; KEGG: hau:Haur_2096 ABC-3 protein; ABC transporter 4548883..4549689 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406162 YP_003169165.1 CDS CAP2UW1_3991 NC_013194.1 4549686 4550426 D KEGG: hau:Haur_2095 periplasmic solute binding protein; periplasmic solute-binding protein 4549686..4550426 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406163 YP_003169166.1 CDS CAP2UW1_3992 NC_013194.1 4550423 4551025 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: fre:Franean1_5232 methyltransferase type 11; type 11 methyltransferase 4550423..4551025 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406164 YP_003169167.1 CDS CAP2UW1_3993 NC_013194.1 4551082 4552287 R KEGG: pfo:PflO1_5675 hypothetical protein; hypothetical protein complement(4551082..4552287) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406165 YP_003169168.1 CDS CAP2UW1_3994 NC_013194.1 4552284 4552454 R hypothetical protein complement(4552284..4552454) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406166 YP_003169169.1 CDS CAP2UW1_3995 NC_013194.1 4552464 4553393 R KEGG: gur:Gura_0800 hypothetical protein; hypothetical protein complement(4552464..4553393) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406167 YP_003169170.1 CDS CAP2UW1_3996 NC_013194.1 4553549 4554382 R KEGG: pfl:PFL_5502 hypothetical protein; hypothetical protein complement(4553549..4554382) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406168 YP_003169171.1 CDS CAP2UW1_3997 NC_013194.1 4554379 4555218 R KEGG: rso:RSc3028 putative signal peptide protein; putative signal peptide protein complement(4554379..4555218) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406169 YP_003169172.1 CDS CAP2UW1_3998 NC_013194.1 4555224 4556915 R KEGG: rso:RSc3029 putative signal peptide protein; putative signal peptide protein complement(4555224..4556915) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406170 YP_003169173.1 CDS CAP2UW1_3999 NC_013194.1 4556915 4561447 R PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: pau:PA14_58250 hypothetical protein; alpha-2-macroglobulin domain-containing protein complement(4556915..4561447) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406171 YP_003169174.1 CDS CAP2UW1_4000 NC_013194.1 4561492 4562208 R PFAM: protein of unknown function DUF1175; KEGG: rso:RSc3031 hypothetical protein; hypothetical protein complement(4561492..4562208) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406172 YP_003169175.1 CDS CAP2UW1_4001 NC_013194.1 4562208 4563896 R KEGG: pfo:PflO1_5002 hypothetical protein; hypothetical protein complement(4562208..4563896) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406173 YP_003169176.1 CDS CAP2UW1_4002 NC_013194.1 4564082 4564255 D hypothetical protein 4564082..4564255 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406174 YP_003169177.1 CDS CAP2UW1_4003 NC_013194.1 4564323 4565264 D PFAM: regulatory protein MerR; KEGG: dar:Daro_0487 regulatory protein, MerR; MerR family transcriptional regulator 4564323..4565264 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406175 YP_003169178.1 CDS CAP2UW1_4004 NC_013194.1 4565280 4565951 R PFAM: protein of unknown function DUF752; KEGG: pdi:BDI_3482 hypothetical protein; hypothetical protein complement(4565280..4565951) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406176 YP_003169179.1 CDS CAP2UW1_4005 NC_013194.1 4571725 4572924 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(4571725..4572924) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406182 YP_003169180.1 CDS CAP2UW1_4007 NC_013194.1 4573887 4575728 R PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; transposase IS4 family protein complement(4573887..4575728) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406184 YP_003169181.1 CDS CAP2UW1_4008 NC_013194.1 4576517 4576777 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_3724 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein complement(4576517..4576777) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406185 YP_003169182.1 CDS CAP2UW1_4009 NC_013194.1 4576791 4577294 R KEGG: dar:Daro_3723 phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(4576791..4577294) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406186 YP_003169183.1 CDS CAP2UW1_4010 NC_013194.1 4577281 4577826 R TIGRFAM: methyltransferase; PFAM: methyltransferase small; Protein of unknown function methylase putative; KEGG: dar:Daro_3722 conserved hypothetical protein 95; methyltransferase complement(4577281..4577826) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406187 YP_003169184.1 CDS CAP2UW1_4011 NC_013194.1 4577840 4579135 R PFAM: peptidase M16 domain protein; KEGG: dar:Daro_3721 peptidase M16, C-terminal:peptidase M16, N-terminal; peptidase M16 domain-containing protein complement(4577840..4579135) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406188 YP_003169185.1 CDS CAP2UW1_4012 NC_013194.1 4579150 4580565 R PFAM: peptidase M16 domain protein; KEGG: dar:Daro_3719 peptidase M16, C-terminal:peptidase M16, N-terminal; peptidase M16 domain-containing protein complement(4579150..4580565) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406189 YP_003169186.1 CDS CAP2UW1_4013 NC_013194.1 4580613 4581602 D KEGG: dar:Daro_3718 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 4580613..4581602 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406190 YP_003169187.1 CDS CAP2UW1_4014 NC_013194.1 4581599 4582288 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3717 cell division ATP-binding protein FtsE; ABC transporter 4581599..4582288 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406191 YP_003169188.1 CDS CAP2UW1_4015 NC_013194.1 4582285 4583184 D PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3716 cell division protein FtsX; hypothetical protein 4582285..4583184 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406192 YP_003169189.1 CDS CAP2UW1_4016 NC_013194.1 4583246 4583620 R PFAM: diacylglycerol kinase; KEGG: azo:azo0859 probable diacylglycerol kinase; diacylglycerol kinase complement(4583246..4583620) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406193 YP_003169190.1 CDS CAP2UW1_4017 NC_013194.1 4583767 4584429 D KEGG: dar:Daro_3560 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 4583767..4584429 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406194 YP_003169191.1 CDS CAP2UW1_4018 NC_013194.1 4584453 4584725 R PFAM: Fe(II) trafficking protein YggX; KEGG: dar:Daro_3583 hypothetical protein; hypothetical protein complement(4584453..4584725) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406195 YP_003169192.1 CDS CAP2UW1_4019 NC_013194.1 4584820 4586139 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(4584820..4586139) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406196 YP_003169193.1 CDS CAP2UW1_4020 NC_013194.1 4586141 4587808 R PFAM: protein of unknown function DUF344; KEGG: dar:Daro_3585 polyphosphate:AMP phosphotransferase; hypothetical protein complement(4586141..4587808) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406197 YP_003169194.1 CDS CAP2UW1_4021 NC_013194.1 4587801 4588565 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(4587801..4588565) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406198 YP_003169195.1 CDS CAP2UW1_4022 NC_013194.1 4588614 4589165 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: dar:Daro_3587 hypothetical protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 4588614..4589165 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406199 YP_003169196.1 CDS CAP2UW1_4023 NC_013194.1 4589229 4590038 D PFAM: inositol monophosphatase; KEGG: nmu:Nmul_A0377 inositol monophosphatase; Inositol-phosphate phosphatase 4589229..4590038 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406200 YP_003169197.1 CDS CAP2UW1_4024 NC_013194.1 4590053 4591195 R PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pfl:PFL_1287 cysteine synthase; Pyridoxal-5'-phosphate-dependent protein subunit beta complement(4590053..4591195) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406201 YP_003169198.1 CDS CAP2UW1_4025 NC_013194.1 4591324 4592415 D PFAM: protein of unknown function DUF59; KEGG: dar:Daro_0576 protein of unknown function DUF59; hypothetical protein 4591324..4592415 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406202 YP_003169199.1 CDS CAP2UW1_4028 NC_013194.1 4594430 4595128 R KEGG: tbd:Tbd_0367 hypothetical protein; hypothetical protein complement(4594430..4595128) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406205 YP_003169200.1 CDS CAP2UW1_4029 NC_013194.1 4595313 4595879 D TIGRFAM: deoxycytidine triphosphate deaminase; KEGG: mfa:Mfla_1060 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 4595313..4595879 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406206 YP_003169201.1 CDS CAP2UW1_4030 NC_013194.1 4595999 4598236 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: mfa:Mfla_1059 ornithine decarboxylase; Lysine decarboxylase 4595999..4598236 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406207 YP_003169202.1 CDS CAP2UW1_4031 NC_013194.1 4598397 4599839 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cbe:Cbei_2190 protein of unknown function DUF21; hypothetical protein complement(4598397..4599839) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406208 YP_003169203.1 CDS hisG NC_013194.1 4600150 4600794 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 4600150..4600794 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406209 YP_003169204.1 CDS CAP2UW1_4033 NC_013194.1 4600791 4602104 D PFAM: histidinol dehydrogenase; KEGG: dar:Daro_3387 histidinol dehydrogenase; Histidinol dehydrogenase 4600791..4602104 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406210 YP_003169205.1 CDS CAP2UW1_4034 NC_013194.1 4602128 4603216 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: eba:ebA1297 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(4602128..4603216) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406211 YP_003169206.1 CDS CAP2UW1_4035 NC_013194.1 4603359 4603946 D PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: dar:Daro_3382 imidazoleglycerol-phosphate dehydratase; Imidazoleglycerol-phosphate dehydratase 4603359..4603946 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406212 YP_003169207.1 CDS CAP2UW1_4036 NC_013194.1 4603946 4604605 D TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dar:Daro_3381 imidazole glycerol phosphate synthase subunit HisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4603946..4604605 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406213 YP_003169208.1 CDS CAP2UW1_4037 NC_013194.1 4604675 4605418 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 4604675..4605418 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406214 YP_003169209.1 CDS CAP2UW1_4038 NC_013194.1 4605456 4606217 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 4605456..4606217 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406215 YP_003169210.1 CDS CAP2UW1_4039 NC_013194.1 4606214 4606618 D PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dar:Daro_3378 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 4606214..4606618 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406216 YP_003169211.1 CDS CAP2UW1_4040 NC_013194.1 4606615 4606935 D TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: dar:Daro_3377 phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-ATP diphosphatase 4606615..4606935 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406217 YP_003169212.1 CDS CAP2UW1_4041 NC_013194.1 4606938 4607288 D PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_3376 histidine triad (HIT) protein; histidine triad (HIT) protein 4606938..4607288 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406218 YP_003169213.1 CDS CAP2UW1_4042 NC_013194.1 4607381 4607626 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dar:Daro_3375 twin argininte translocase protein A; twin-arginine translocation protein, TatA/E family subunit 4607381..4607626 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406219 YP_003169214.1 CDS CAP2UW1_4043 NC_013194.1 4607738 4608136 D TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: bpt:Bpet0128 sec-independent protein translocase protein; twin-arginine translocation protein subunit TatB 4607738..4608136 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406220 YP_003169215.1 CDS CAP2UW1_4044 NC_013194.1 4608145 4609014 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: tbd:Tbd_1702 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 4608145..4609014 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406221 YP_003169216.1 CDS CAP2UW1_4045 NC_013194.1 4609073 4609867 R PFAM: glutamine amidotransferase class-II; KEGG: dar:Daro_3372 glutamine amidotransferase, class-II; glutamine amidotransferase class-II complement(4609073..4609867) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406222 YP_003169217.1 CDS CAP2UW1_4046 NC_013194.1 4609885 4611066 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: dar:Daro_3371 peptidase S1 and S6, chymotrypsin/Hap:PDZ/DHR/GLGF; 2-alkenal reductase complement(4609885..4611066) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406223 YP_003169218.1 CDS CAP2UW1_4047 NC_013194.1 4611088 4611834 D PFAM: protein of unknown function DUF34; KEGG: dar:Daro_3370 protein of unknown function DUF34; hypothetical protein 4611088..4611834 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406224 YP_003169219.1 CDS CAP2UW1_4048 NC_013194.1 4611854 4612537 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: dar:Daro_3368 fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 4611854..4612537 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406225 YP_003169220.1 CDS CAP2UW1_4049 NC_013194.1 4612666 4613193 D KEGG: dar:Daro_3348 hypothetical protein; hypothetical protein 4612666..4613193 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406226 YP_003169221.1 CDS CAP2UW1_4050 NC_013194.1 4613354 4613917 D PFAM: Heptaprenyl diphosphate synthase component I; KEGG: dar:Daro_0068 heptaprenyl diphosphate synthase component I; Heptaprenyl diphosphate synthase component I 4613354..4613917 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406227 YP_003169222.1 CDS CAP2UW1_4051 NC_013194.1 4613910 4614542 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: dar:Daro_0067 aromatic acid decarboxylase; aromatic acid decarboxylase 4613910..4614542 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406228 YP_003169223.1 CDS CAP2UW1_4052 NC_013194.1 4614542 4615759 D PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3967 permease of the major facilitator superfamily; major facilitator superfamily protein 4614542..4615759 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406229 YP_003169224.1 CDS CAP2UW1_4053 NC_013194.1 4615845 4620044 D KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4615845..4620044 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406230 YP_003169225.1 CDS CAP2UW1_4054 NC_013194.1 4620076 4621140 R KEGG: bcm:Bcenmc03_2808 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(4620076..4621140) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406231 YP_003169226.1 CDS CAP2UW1_4055 NC_013194.1 4621545 4622135 D PFAM: flavin reductase domain protein FMN-binding; KEGG: azo:azo3811 probable nitrilotriacetate monooxygenase; flavin reductase domain-containing protein FMN-binding 4621545..4622135 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406232 YP_003169227.1 CDS CAP2UW1_4056 NC_013194.1 4622302 4622505 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: azo:azo1134 cold-shock protein; cold-shock DNA-binding domain-containing protein complement(4622302..4622505) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406233 YP_003169228.1 CDS CAP2UW1_4057 NC_013194.1 4622764 4623072 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: eba:ebD83 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 4622764..4623072 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406234 YP_003169229.1 CDS CAP2UW1_4058 NC_013194.1 4623073 4625331 D KEGG: dar:Daro_3095 AAA ATPase, central region:Clp, N terminal; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit clpA 4623073..4625331 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406235 YP_003169230.1 CDS CAP2UW1_4059 NC_013194.1 4625414 4625908 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 4625414..4625908 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406236 YP_003169231.1 CDS CAP2UW1_4060 NC_013194.1 4625993 4626499 D PFAM: Ankyrin; KEGG: dar:Daro_1199 ankyrin; Ankyrin 4625993..4626499 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406237 YP_003169232.1 CDS CAP2UW1_4061 NC_013194.1 4626518 4627732 R PFAM: protein of unknown function DUF847; KEGG: bcs:BCAN_A1001 protein of unknown function DUF847; hypothetical protein complement(4626518..4627732) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406238 YP_003169233.1 CDS CAP2UW1_4062 NC_013194.1 4627850 4629865 R KEGG: pol:Bpro_1508 integral membrane protein-like; integral membrane protein complement(4627850..4629865) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406239 YP_003169234.1 CDS CAP2UW1_4063 NC_013194.1 4629875 4631890 R KEGG: pol:Bpro_1508 integral membrane protein-like; integral membrane protein complement(4629875..4631890) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406240 YP_003169235.1 CDS CAP2UW1_4064 NC_013194.1 4631966 4633591 R PFAM: MscS Mechanosensitive ion channel; KEGG: cti:RALTA_B0305 putative mechanosensitive ion channel, MscS family; mechanosensitive ion channel protein MscS complement(4631966..4633591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406241 YP_003169236.1 CDS CAP2UW1_4065 NC_013194.1 4633765 4635213 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: dar:Daro_3328 Microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62; peptidase U62 modulator of DNA gyrase complement(4633765..4635213) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406242 YP_003169237.1 CDS CAP2UW1_4066 NC_013194.1 4635259 4636104 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dar:Daro_3329 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(4635259..4636104) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406243 YP_003169238.1 CDS CAP2UW1_4067 NC_013194.1 4636130 4640053 R KEGG: dar:Daro_3330 conserved hypothetical protein 2099; hypothetical protein complement(4636130..4640053) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406244 YP_003169239.1 CDS CAP2UW1_4068 NC_013194.1 4640125 4642962 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 4640125..4642962 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406245 YP_003169240.1 CDS CAP2UW1_4069 NC_013194.1 4643138 4645696 D PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dar:Daro_3009 protein of unknown function DUF403; hypothetical protein 4643138..4645696 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406246 YP_003169241.1 CDS CAP2UW1_4070 NC_013194.1 4645702 4646706 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: pmy:Pmen_0657 transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 4645702..4646706 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406247 YP_003169242.1 CDS CAP2UW1_4071 NC_013194.1 4646975 4649647 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: eba:ebA4146 cation transport ATPase; HAD superfamily P-type ATPase 4646975..4649647 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406248 YP_003169243.1 CDS CAP2UW1_4072 NC_013194.1 4649744 4650226 D KEGG: hch:HCH_01698 predicted membrane protein; membrane protein 4649744..4650226 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406249 YP_003169244.1 CDS CAP2UW1_4073 NC_013194.1 4650250 4653495 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Two component regulator propeller; Two component regulator three Y domain protein; KEGG: swi:Swit_1316 diguanylate cyclase; diguanylate cyclase with beta propeller sensor 4650250..4653495 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406250 YP_003169245.1 CDS CAP2UW1_4074 NC_013194.1 4653562 4653789 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: sus:Acid_1028 putative regulatory protein, FmdB family; FmdB family regulatory protein complement(4653562..4653789) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406251 YP_003169246.1 CDS CAP2UW1_4075 NC_013194.1 4653913 4654149 R KEGG: rme:Rmet_3472 hypothetical protein; hypothetical protein complement(4653913..4654149) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406252 YP_003169247.1 CDS CAP2UW1_4076 NC_013194.1 4654162 4654554 R KEGG: reu:Reut_A3320 hypothetical protein; hypothetical protein complement(4654162..4654554) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406253 YP_003169248.1 CDS CAP2UW1_4077 NC_013194.1 4654822 4655880 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: mpt:Mpe_A3247 conserved hypothetical dioxygenase; 2-nitropropane dioxygenase NPD 4654822..4655880 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406254 YP_003169249.1 CDS CAP2UW1_4078 NC_013194.1 4656006 4656848 R catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase complement(4656006..4656848) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406255 YP_003169250.1 CDS CAP2UW1_4079 NC_013194.1 4657188 4657559 D KEGG: dar:Daro_0197 hypothetical protein; hypothetical protein 4657188..4657559 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406256 YP_003169251.1 CDS CAP2UW1_4080 NC_013194.1 4657633 4659057 D KEGG: dar:Daro_0198 hypothetical protein; hypothetical protein 4657633..4659057 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406257 YP_003169252.1 CDS CAP2UW1_4081 NC_013194.1 4659054 4659959 D PFAM: periplasmic solute binding protein; KEGG: tbd:Tbd_2538 zinc/manganese transport system substrate-binding protein; periplasmic solute-binding protein 4659054..4659959 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406258 YP_003169253.1 CDS CAP2UW1_4082 NC_013194.1 4659956 4660738 D PFAM: ABC-3 protein; KEGG: tbd:Tbd_2539 zinc/manganese transport system permease protein; ABC transporter 4659956..4660738 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406259 YP_003169254.1 CDS CAP2UW1_4083 NC_013194.1 4660879 4661457 D KEGG: vei:Veis_3396 ABC-type metal ion transport system, periplasmic component/surface adhesin; metal ion ABC transporter periplasmic protein surface adhesin 4660879..4661457 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406260 YP_003169255.1 CDS CAP2UW1_4084 NC_013194.1 4661465 4662187 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_3395 ABC transporter related; ABC transporter 4661465..4662187 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406261 YP_003169256.1 CDS CAP2UW1_4085 NC_013194.1 4662175 4663449 D PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_0704 protein of unknown function DUF214; hypothetical protein 4662175..4663449 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406262 YP_003169257.1 CDS CAP2UW1_4086 NC_013194.1 4663702 4664226 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 4663702..4664226 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406263 YP_003169258.1 CDS CAP2UW1_4087 NC_013194.1 4664356 4665678 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 4664356..4665678 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406264 YP_003169259.1 CDS CAP2UW1_4088 NC_013194.1 4665681 4666475 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 4665681..4666475 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406265 YP_003169260.1 CDS CAP2UW1_4089 NC_013194.1 4666472 4666669 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 4666472..4666669 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406266 YP_003169261.1 CDS CAP2UW1_4090 NC_013194.1 4666943 4667323 D KEGG: mpt:Mpe_A1829 hypothetical protein; hypothetical protein 4666943..4667323 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406267 YP_003169262.1 CDS CAP2UW1_4091 NC_013194.1 4667446 4669335 R PFAM: sulfatase; KEGG: pau:PA14_52300 hypothetical protein; sulfatase complement(4667446..4669335) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406268 YP_003169263.1 CDS CAP2UW1_4092 NC_013194.1 4669528 4670586 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: dar:Daro_0680 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 4669528..4670586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406269 YP_003169264.1 CDS CAP2UW1_4093 NC_013194.1 4670626 4671609 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: azo:azo1418 putative cobalt-zinc-cadmium resistance protein; cation diffusion facilitator family transporter 4670626..4671609 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406270 YP_003169265.1 CDS CAP2UW1_4094 NC_013194.1 4671616 4672074 D PFAM: GCN5-related N-acetyltransferase; KEGG: rxy:Rxyl_2877 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 4671616..4672074 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406271 YP_003169266.1 CDS CAP2UW1_4095 NC_013194.1 4672071 4672523 D PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: dar:Daro_0005 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase 4672071..4672523 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406272 YP_003169267.1 CDS CAP2UW1_4096 NC_013194.1 4673508 4673660 R hypothetical protein complement(4673508..4673660) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406275 YP_003169268.1 CDS CAP2UW1_4097 NC_013194.1 4673761 4675041 D KEGG: dar:Daro_2515 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 4673761..4675041 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406276 YP_003169269.1 CDS CAP2UW1_4098 NC_013194.1 4675400 4675798 R PFAM: Collagen triple helix repeat; KEGG: bph:Bphy_3402 collagen triple helix repeat; Collagen triple helix repeat-containing protein complement(4675400..4675798) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406278 YP_003169270.1 CDS CAP2UW1_4099 NC_013194.1 4676264 4678288 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: eba:ebA5836 2,4-dienoyl-CoA reductase; NADH:flavin oxidoreductase/NADH oxidase 4676264..4678288 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406279 YP_003169271.1 CDS CAP2UW1_4100 NC_013194.1 4678432 4678881 D KEGG: bte:BTH_II0293 transcriptional regulator, TetR family, putative; TetR family transcriptional regulator 4678432..4678881 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406280 YP_003169272.1 CDS CAP2UW1_4101 NC_013194.1 4678886 4679734 R PFAM: Rhodanese domain protein; KEGG: azo:azo2754 putative thiosulfate sulfurtransferase; Rhodanese domain-containing protein complement(4678886..4679734) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406281 YP_003169273.1 CDS CAP2UW1_4102 NC_013194.1 4679731 4680096 R KEGG: eba:ebB151 hypothetical protein; hypothetical protein complement(4679731..4680096) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406282 YP_003169274.1 CDS CAP2UW1_4103 NC_013194.1 4680299 4680586 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: dar:Daro_3059 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit 4680299..4680586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406283 YP_003169275.1 CDS CAP2UW1_4104 NC_013194.1 4680583 4681506 D PFAM: Polyprenyl synthetase; KEGG: dar:Daro_3060 farnesyl-diphosphate synthase; polyprenyl synthetase 4680583..4681506 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406284 YP_003169276.1 CDS CAP2UW1_4105 NC_013194.1 4681571 4683460 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 4681571..4683460 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406285 YP_003169277.1 CDS CAP2UW1_4106 NC_013194.1 4683476 4684294 D PFAM: protein of unknown function DUF198; KEGG: dar:Daro_3062 GTP cyclohydrolase; hypothetical protein 4683476..4684294 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406286 YP_003169278.1 CDS CAP2UW1_4107 NC_013194.1 4684397 4684762 R PFAM: ribosomal protein L19; KEGG: dar:Daro_3063 50S ribosomal protein L19; 50S ribosomal protein L19 complement(4684397..4684762) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406287 YP_003169279.1 CDS CAP2UW1_4108 NC_013194.1 4684786 4685574 R KEGG: dar:Daro_3064 tRNA (guanine37-N1) methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(4684786..4685574) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406288 YP_003169280.1 CDS CAP2UW1_4109 NC_013194.1 4685589 4686161 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: azo:azo2899 conserved hypothetical 16S rRNA processing protein; 16S rRNA processing protein RimM complement(4685589..4686161) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406289 YP_003169281.1 CDS CAP2UW1_4110 NC_013194.1 4686165 4686419 R PFAM: ribosomal protein S16; KEGG: reu:Reut_A2540 30S ribosomal protein S16; 30S ribosomal protein S16 complement(4686165..4686419) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406290 YP_003169282.1 CDS CAP2UW1_4111 NC_013194.1 4686612 4687871 D PFAM: Integrase catalytic region; KEGG: pol:Bpro_3038 integrase, catalytic region; integrase catalytic subunit 4686612..4687871 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406291 YP_003169283.1 CDS CAP2UW1_4112 NC_013194.1 4688394 4689920 D KEGG: dar:Daro_3067 hypothetical protein; hypothetical protein 4688394..4689920 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406292 YP_003169284.1 CDS CAP2UW1_4113 NC_013194.1 4689917 4690759 R PFAM: ribonuclease BN; KEGG: dar:Daro_3068 ribonuclease BN; ribonuclease BN complement(4689917..4690759) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406293 YP_003169285.1 CDS CAP2UW1_4114 NC_013194.1 4690780 4691373 D TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; KEGG: eba:ebA7157 flavodoxin-like protein; flavoprotein WrbA 4690780..4691373 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406294 YP_003169286.1 CDS CAP2UW1_4115 NC_013194.1 4691370 4691717 D KEGG: tbd:Tbd_1980 hypothetical protein; hypothetical protein 4691370..4691717 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406295 YP_003169287.1 CDS CAP2UW1_4116 NC_013194.1 4691766 4693304 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(4691766..4693304) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406296 YP_003169288.1 CDS CAP2UW1_4117 NC_013194.1 4693429 4694196 R KEGG: dar:Daro_3072 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(4693429..4694196) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406297 YP_003169289.1 CDS CAP2UW1_4118 NC_013194.1 4694272 4695288 R KEGG: eba:ebA7134 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase complement(4694272..4695288) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406298 YP_003169290.1 CDS ilvH NC_013194.1 4695318 4695809 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(4695318..4695809) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406299 YP_003169291.1 CDS CAP2UW1_4120 NC_013194.1 4695822 4697534 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: azo:azo3154 acetolactate synthase; acetolactate synthase large subunit complement(4695822..4697534) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406300 YP_003169292.1 CDS CAP2UW1_4121 NC_013194.1 4697737 4698234 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: dar:Daro_3076 RNA polymerase factor sigma-70; ECF subfamily RNA polymerase sigma-24 subunit 4697737..4698234 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406301 YP_003169293.1 CDS CAP2UW1_4122 NC_013194.1 4698231 4698608 D KEGG: dar:Daro_3077 probable transmembrane protein; hypothetical protein 4698231..4698608 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406302 YP_003169294.1 CDS CAP2UW1_4123 NC_013194.1 4698581 4699195 D KEGG: dar:Daro_3078 hypothetical protein; hypothetical protein 4698581..4699195 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406303 YP_003169295.1 CDS CAP2UW1_4124 NC_013194.1 4699195 4699620 D PFAM: RDD domain containing protein; KEGG: azo:azo3150 conserved hypothetical RDD family protein; RDD domain-containing protein 4699195..4699620 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406304 YP_003169296.1 CDS CAP2UW1_4125 NC_013194.1 4699628 4700701 R PFAM: permease YjgP/YjgQ family protein; KEGG: dar:Daro_3080 permease YjgP/YjgQ; permease YjgP/YjgQ family protein complement(4699628..4700701) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406305 YP_003169297.1 CDS CAP2UW1_4126 NC_013194.1 4700698 4701777 R PFAM: permease YjgP/YjgQ family protein; KEGG: dar:Daro_3081 permease YjgP/YjgQ; permease YjgP/YjgQ family protein complement(4700698..4701777) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406306 YP_003169298.1 CDS CAP2UW1_4127 NC_013194.1 4701851 4703347 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4701851..4703347 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406307 YP_003169299.1 CDS CAP2UW1_4128 NC_013194.1 4703344 4703769 D PFAM: DNA polymerase III chi subunit HolC; KEGG: dar:Daro_3083 DNA polymerase III chi subunit, HolC; DNA polymerase III subunit chi HolC 4703344..4703769 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406308 YP_003169300.1 CDS CAP2UW1_4129 NC_013194.1 4703769 4704269 D KEGG: cur:cu0218 hypothetical protein; hypothetical protein 4703769..4704269 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406309 YP_003169301.1 CDS valS NC_013194.1 4704320 4707148 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 4704320..4707148 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406310 YP_003169302.1 CDS CAP2UW1_4131 NC_013194.1 4707182 4708972 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: dar:Daro_3087 Para-aminobenzoate synthase, component I; para-aminobenzoate synthase subunit I complement(4707182..4708972) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406311 YP_003169303.1 CDS CAP2UW1_4132 NC_013194.1 4709042 4709269 R PFAM: SirA family protein; KEGG: dar:Daro_3088 SirA-like; SirA family protein complement(4709042..4709269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406312 YP_003169304.1 CDS CAP2UW1_4133 NC_013194.1 4709302 4710789 R PFAM: peptidase M48 Ste24p; KEGG: dar:Daro_3089 peptidase M48, Ste24p; peptidase M48 Ste24p complement(4709302..4710789) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406313 YP_003169305.1 CDS CAP2UW1_4134 NC_013194.1 4710965 4711399 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dar:Daro_3090 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 4710965..4711399 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406314 YP_003169306.1 CDS CAP2UW1_4135 NC_013194.1 4711693 4712013 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein; histone family protein nucleoid-structuring protein H-NS 4711693..4712013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406315 YP_003169307.1 CDS CAP2UW1_4136 NC_013194.1 4712037 4713038 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mpt:Mpe_A1914 UDP-galactose 4-epimerase; UDP-glucose 4-epimerase 4712037..4713038 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406316 YP_003169308.1 CDS apaH NC_013194.1 4713051 4713869 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4713051..4713869 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406317 YP_003169309.1 CDS CAP2UW1_4138 NC_013194.1 4713998 4714549 D KEGG: azo:azo2840 putative secreted protein; hypothetical protein 4713998..4714549 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406318 YP_003169310.1 CDS CAP2UW1_4139 NC_013194.1 4714749 4715684 R PFAM: PfkB domain protein; KEGG: dar:Daro_3935 PfkB; PfkB domain-containing protein complement(4714749..4715684) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406319 YP_003169311.1 CDS CAP2UW1_4140 NC_013194.1 4715767 4716696 R TIGRFAM: MJ0042 family finger-like protein; KEGG: dar:Daro_3936 hypothetical protein; hypothetical protein complement(4715767..4716696) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406320 YP_003169312.1 CDS prmA NC_013194.1 4716702 4717592 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(4716702..4717592) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406321 YP_003169313.1 CDS CAP2UW1_4142 NC_013194.1 4717607 4718971 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(4717607..4718971) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406322 YP_003169314.1 CDS CAP2UW1_4143 NC_013194.1 4718987 4719442 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: azo:azo0864 probable biotin carboxyl carrier protein of acetyl-CoA carboxylase; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(4718987..4719442) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406323 YP_003169315.1 CDS CAP2UW1_4144 NC_013194.1 4719519 4719701 R hypothetical protein complement(4719519..4719701) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406324 YP_003169316.1 CDS CAP2UW1_4145 NC_013194.1 4719753 4720304 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: har:HEAR2760 thioredoxin-related transmembrane protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(4719753..4720304) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406325 YP_003169317.1 CDS CAP2UW1_4146 NC_013194.1 4720315 4720908 R KEGG: dar:Daro_3941 hypothetical protein; hypothetical protein complement(4720315..4720908) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406326 YP_003169318.1 CDS CAP2UW1_4147 NC_013194.1 4721021 4722379 D TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: dar:Daro_3942 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; UDP-N-acetylmuramate 4721021..4722379 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406327 YP_003169319.1 CDS CAP2UW1_4148 NC_013194.1 4722387 4723283 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(4722387..4723283) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406328 YP_003169320.1 CDS CAP2UW1_4149 NC_013194.1 4723297 4723905 R KEGG: dar:Daro_1464 probable transmembrane protein; hypothetical protein complement(4723297..4723905) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406329 YP_003169321.1 CDS CAP2UW1_4150 NC_013194.1 4723907 4724587 R KEGG: dar:Daro_1465 surfeit locus 1; surfeit locus 1 complement(4723907..4724587) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406330 YP_003169322.1 CDS CAP2UW1_4151 NC_013194.1 4724706 4724906 D KEGG: dar:Daro_1466 hypothetical protein; hypothetical protein 4724706..4724906 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406331 YP_003169323.1 CDS CAP2UW1_4152 NC_013194.1 4724894 4725754 R PFAM: cytochrome c oxidase subunit III; KEGG: dar:Daro_1467 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(4724894..4725754) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406332 YP_003169324.1 CDS CAP2UW1_4153 NC_013194.1 4725779 4726366 R involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein complement(4725779..4726366) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406333 YP_003169325.1 CDS CAP2UW1_4154 NC_013194.1 4726529 4728136 R KEGG: dar:Daro_1470 cytochrome c oxidase, subunit I; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I complement(4726529..4728136) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406334 YP_003169326.1 CDS CAP2UW1_4155 NC_013194.1 4728160 4729341 R KEGG: dar:Daro_1471 cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome c oxidase subunit II, transmembrane region; TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; cytochrome C oxidase subunit II transmembrane region; cytochrome c oxidase subunit II complement(4728160..4729341) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406335 YP_003169327.1 CDS CAP2UW1_4156 NC_013194.1 4729370 4729843 R KEGG: noc:Noc_3048 hypothetical protein; hypothetical protein complement(4729370..4729843) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406336 YP_003169328.1 CDS CAP2UW1_4157 NC_013194.1 4730143 4731003 R TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: dar:Daro_3837 RNA polymerase factor sigma-32; RNA polymerase sigma-32 subunit RpoH complement(4730143..4731003) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406337 YP_003169329.1 CDS CAP2UW1_4158 NC_013194.1 4731291 4731551 D KEGG: mpt:Mpe_A2832 hypothetical protein; hypothetical protein 4731291..4731551 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406338 YP_003169330.1 CDS CAP2UW1_4159 NC_013194.1 4731625 4732464 D PFAM: protein of unknown function DUF692; Xylose isomerase domain protein TIM barrel; KEGG: mpt:Mpe_A2831 hypothetical protein; hypothetical protein 4731625..4732464 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406339 YP_003169331.1 CDS CAP2UW1_4160 NC_013194.1 4732461 4733228 D KEGG: mpt:Mpe_A2830 hypothetical protein; hypothetical protein 4732461..4733228 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406340 YP_003169332.1 CDS CAP2UW1_4161 NC_013194.1 4733412 4733867 R PFAM: NUDIX hydrolase; KEGG: neu:NE2253 dATP pyrophosphohydrolase; NUDIX hydrolase complement(4733412..4733867) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406341 YP_003169333.1 CDS CAP2UW1_4162 NC_013194.1 4733864 4734307 R KEGG: eba:ebA4336 hypothetical protein; hypothetical protein complement(4733864..4734307) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406342 YP_003169334.1 CDS CAP2UW1_4163 NC_013194.1 4734304 4734711 R PFAM: guanine-specific ribonuclease N1 and T1; KEGG: dar:Daro_0633 guanine-specific ribonuclease N1 and T1; guanine-specific ribonuclease N1 and T1 complement(4734304..4734711) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406343 YP_003169335.1 CDS aspS NC_013194.1 4734718 4736520 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(4734718..4736520) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406344 YP_003169336.1 CDS CAP2UW1_4165 NC_013194.1 4736544 4737191 R PFAM: protein of unknown function DUF502; KEGG: dar:Daro_0635 protein of unknown function DUF502; hypothetical protein complement(4736544..4737191) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406345 YP_003169337.1 CDS CAP2UW1_4166 NC_013194.1 4737176 4737508 R TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: har:HEAR2846 hypothetical protein; FmdB family regulatory protein complement(4737176..4737508) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406346 YP_003169338.1 CDS CAP2UW1_4167 NC_013194.1 4737616 4738476 R PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: eba:ebA4343 type IV fimbrial biogenesis protein, prepilin cysteine protease (C20) PilD; prepilin peptidase complement(4737616..4738476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406347 YP_003169339.1 CDS CAP2UW1_4168 NC_013194.1 4738476 4739714 R PFAM: type II secretion system protein; KEGG: dar:Daro_0638 type II secretion system protein; type II secretion system protein complement(4738476..4739714) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406348 YP_003169340.1 CDS CAP2UW1_4169 NC_013194.1 4739737 4741452 R TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dar:Daro_0639 type II secretion system protein E:general secretory system II, protein E, N-terminal; type IV-A pilus assembly ATPase PilB complement(4739737..4741452) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406349 YP_003169341.1 CDS CAP2UW1_4170 NC_013194.1 4741638 4741772 R hypothetical protein complement(4741638..4741772) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406350 YP_003169342.1 CDS CAP2UW1_4171 NC_013194.1 4741877 4742791 R TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dar:Daro_0194 tyrosine recombinase XerC subunit; tyrosine recombinase XerC complement(4741877..4742791) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406351 YP_003169343.1 CDS CAP2UW1_4172 NC_013194.1 4742802 4743455 R PFAM: protein of unknown function DUF484; KEGG: dar:Daro_0193 protein of unknown function DUF484; hypothetical protein complement(4742802..4743455) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406352 YP_003169344.1 CDS CAP2UW1_4173 NC_013194.1 4743452 4744282 R PFAM: diaminopimelate epimerase; KEGG: dar:Daro_0192 diaminopimelate epimerase; Diaminopimelate epimerase complement(4743452..4744282) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406353 YP_003169345.1 CDS CAP2UW1_4174 NC_013194.1 4744279 4744806 R PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_0191 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(4744279..4744806) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406354 YP_003169346.1 CDS CAP2UW1_4175 NC_013194.1 4744960 4746792 R TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: azo:azo3636 glucosamine-fructose-6-phosphate aminotransferase; glucosamine/fructose-6-phosphate aminotransferase complement(4744960..4746792) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406355 YP_003169347.1 CDS CAP2UW1_4176 NC_013194.1 4746843 4748201 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: dar:Daro_0220 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(4746843..4748201) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406356 YP_003169348.1 CDS CAP2UW1_4177 NC_013194.1 4748605 4750047 R TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA2251 glutamate synthase subunit beta; glutamate synthase, NADH/NADPH small subunit complement(4748605..4750047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406357 YP_003169349.1 CDS CAP2UW1_4178 NC_013194.1 4750050 4754729 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: eba:ebA2252 ferredoxin-dependent glutamate synthase; glutamate synthase complement(4750050..4754729) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406358 YP_003169350.1 CDS pntA NC_013194.1 4755383 4756975 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 4755383..4756975 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406359 YP_003169351.1 CDS CAP2UW1_4180 NC_013194.1 4756988 4758406 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: rfr:Rfer_3753 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 4756988..4758406 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406360 YP_003169352.1 CDS CAP2UW1_4181 NC_013194.1 4758629 4759090 D PFAM: CBS domain containing protein; KEGG: pna:Pnap_2757 CBS domain containing protein; CBS domain-containing protein 4758629..4759090 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406361 YP_003169353.1 CDS CAP2UW1_4182 NC_013194.1 4759148 4760269 R KEGG: bte:BTH_I3022 deoxyguanosinetriphosphate triphosphohydrolase, putative; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(4759148..4760269) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406362 YP_003169354.1 CDS aroB NC_013194.1 4760262 4761350 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(4760262..4761350) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406363 YP_003169355.1 CDS aroK NC_013194.1 4761338 4761874 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(4761338..4761874) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406364 YP_003169356.1 CDS CAP2UW1_4185 NC_013194.1 4761969 4764080 R TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: azo:azo3646 probable type 4 fimbrial biogenesis protein; type IV pilus secretin PilQ complement(4761969..4764080) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406365 YP_003169357.1 CDS CAP2UW1_4186 NC_013194.1 4764081 4764596 R PFAM: Pilus assembly protein PilP; KEGG: azo:azo3647 putative type 4 fimbrial biogenesis protein; Pilus assembly protein PilP complement(4764081..4764596) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406366 YP_003169358.1 CDS CAP2UW1_4187 NC_013194.1 4764593 4765267 R PFAM: Pilus assembly protein PilO; KEGG: dar:Daro_0212 pilus assembly protein, PilO; Pilus assembly protein PilO complement(4764593..4765267) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406367 YP_003169359.1 CDS CAP2UW1_4188 NC_013194.1 4765264 4765833 R PFAM: Fimbrial assembly family protein; KEGG: dar:Daro_0211 fimbrial assembly; Fimbrial assembly family protein complement(4765264..4765833) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406368 YP_003169360.1 CDS CAP2UW1_4189 NC_013194.1 4765830 4766909 R TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM complement(4765830..4766909) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406369 YP_003169361.1 CDS CAP2UW1_4190 NC_013194.1 4767155 4769569 D KEGG: dar:Daro_0209 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 4767155..4769569 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406370 YP_003169362.1 CDS CAP2UW1_4191 NC_013194.1 4769852 4770049 D hypothetical protein 4769852..4770049 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406371 YP_003169363.1 CDS CAP2UW1_4192 NC_013194.1 4770334 4772136 D KEGG: azo:azo3572 lipid A export ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 4770334..4772136 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406372 YP_003169364.1 CDS CAP2UW1_4193 NC_013194.1 4772180 4773616 R KEGG: eba:ebA3993 conserved hypothetical protein, predicted protein kinase family; hypothetical protein complement(4772180..4773616) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406373 YP_003169365.1 CDS CAP2UW1_4194 NC_013194.1 4773672 4774496 R PFAM: lipopolysaccharide kinase; KEGG: eba:ebA3995 lipopolysaccharide core biosynthesis protein WaaP; lipopolysaccharide kinase complement(4773672..4774496) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406374 YP_003169366.1 CDS CAP2UW1_4195 NC_013194.1 4774493 4775614 R PFAM: glycosyl transferase group 1; KEGG: eba:ebA3996 UDP-glucose:(heptosyl) LPS alpha 1,3-glucosyltransferase; group 1 glycosyl transferase complement(4774493..4775614) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406375 YP_003169367.1 CDS CAP2UW1_4196 NC_013194.1 4775667 4776533 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(4775667..4776533) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406376 YP_003169368.1 CDS CAP2UW1_4197 NC_013194.1 4776743 4777909 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4776743..4777909 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406377 YP_003169369.1 CDS CAP2UW1_4198 NC_013194.1 4778022 4779254 D KEGG: rfr:Rfer_3329 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4778022..4779254 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406378 YP_003169370.1 CDS CAP2UW1_4199 NC_013194.1 4779295 4779846 R TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ajs:Ajs_0145 ubiquinol-cytochrome c reductase, iron-sulfur subunit; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(4779295..4779846) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406379 YP_003169371.1 CDS CAP2UW1_4201 NC_013194.1 4780219 4781847 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cti:RALTA_A0493 conserved hypothetical protein, COG2989; putative exported protein; peptidoglycan-binding domain 1 protein 4780219..4781847 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406381 YP_003169372.1 CDS CAP2UW1_4202 NC_013194.1 4781866 4782423 D PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: reh:H16_A0538 hypothetical protein; hypothetical protein 4781866..4782423 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406382 YP_003169373.1 CDS CAP2UW1_4203 NC_013194.1 4782802 4783191 R KEGG: dac:Daci_2490 hypothetical protein; hypothetical protein complement(4782802..4783191) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406383 YP_003169374.1 CDS CAP2UW1_4204 NC_013194.1 4783297 4783770 R KEGG: glo:Glov_1953 hypothetical protein; hypothetical protein complement(4783297..4783770) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406384 YP_003169375.1 CDS CAP2UW1_4205 NC_013194.1 4783929 4784837 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: bxe:Bxe_A4020 putative 10 TMS drug/metabolite exporter (DME)family, DMT superfamily; hypothetical protein complement(4783929..4784837) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406385 YP_003169376.1 CDS CAP2UW1_4206 NC_013194.1 4784941 4786074 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related; ABC transporter complement(4784941..4786074) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406386 YP_003169377.1 CDS CAP2UW1_4207 NC_013194.1 4786071 4786733 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_1924 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(4786071..4786733) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406387 YP_003169378.1 CDS CAP2UW1_4208 NC_013194.1 4786744 4787508 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: mfa:Mfla_1391 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter substrate-binding protein complement(4786744..4787508) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406388 YP_003169379.1 CDS CAP2UW1_4209 NC_013194.1 4787513 4788469 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: dar:Daro_0672 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; d-isomer specific 2-hydroxyacid dehydrogenase complement(4787513..4788469) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406389 YP_003169380.1 CDS CAP2UW1_4210 NC_013194.1 4788473 4789171 R KEGG: dar:Daro_0671 aldehyde dehydrogenase; aldehyde dehydrogenase complement(4788473..4789171) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406390 YP_003169381.1 CDS CAP2UW1_4211 NC_013194.1 4789342 4790121 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: dar:Daro_0668 regulatory proteins, IclR; IclR family transcriptional regulator 4789342..4790121 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406391 YP_003169382.1 CDS CAP2UW1_4212 NC_013194.1 4790294 4791076 D KEGG: dar:Daro_0466 competence protein ComEA helix-hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; competence protein ComEA helix-hairpin-helix repeat-containing protein 4790294..4791076 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406392 YP_003169383.1 CDS CAP2UW1_4213 NC_013194.1 4791235 4792098 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: azo:azo0573 hypothetical protein; hypothetical protein 4791235..4792098 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406393 YP_003169384.1 CDS CAP2UW1_4214 NC_013194.1 4792095 4792649 D KEGG: dar:Daro_4063 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 4792095..4792649 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406394 YP_003169385.1 CDS ruvA NC_013194.1 4792663 4793238 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 4792663..4793238 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406395 YP_003169386.1 CDS CAP2UW1_4216 NC_013194.1 4793246 4794331 D PFAM: protein of unknown function UPF0118; KEGG: dar:Daro_4061 hypothetical protein; hypothetical protein 4793246..4794331 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406396 YP_003169387.1 CDS CAP2UW1_4217 NC_013194.1 4794328 4795392 D KEGG: dar:Daro_4060 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 4794328..4795392 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406397 YP_003169388.1 CDS CAP2UW1_4218 NC_013194.1 4795469 4795912 D TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: dar:Daro_4057 4-hydroxybenzoyl-CoA thioesterase; tol-pal system-associated acyl-CoA thioesterase 4795469..4795912 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406398 YP_003169389.1 CDS CAP2UW1_4219 NC_013194.1 4795909 4796586 D TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dar:Daro_4056 MotA/TolQ/ExbB proton channel; protein TolQ 4795909..4796586 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406399 YP_003169390.1 CDS CAP2UW1_4220 NC_013194.1 4796591 4796995 D TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: neu:NE0216 biopolymer transport protein ExbD/TolR; protein TolR 4796591..4796995 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406400 YP_003169391.1 CDS CAP2UW1_4221 NC_013194.1 4797007 4798065 D TIGRFAM: TonB family protein; protein TolA; KEGG: eba:ebA2648 hypothetical protein; protein TolA 4797007..4798065 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406401 YP_003169392.1 CDS CAP2UW1_4222 NC_013194.1 4798102 4799013 D KEGG: bph:Bphy_7285 hypothetical protein; hypothetical protein 4798102..4799013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406402 YP_003169393.1 CDS tolB NC_013194.1 4799139 4800431 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 4799139..4800431 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406403 YP_003169394.1 CDS CAP2UW1_4224 NC_013194.1 4800475 4801005 D TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_4052 OmpA/MotB; peptidoglycan-associated lipoprotein 4800475..4801005 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406404 YP_003169395.1 CDS CAP2UW1_4225 NC_013194.1 4801007 4801801 D TIGRFAM: tol-pal system protein YbgF; KEGG: dar:Daro_4051 hypothetical protein; tol-pal system protein YbgF 4801007..4801801 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406405 YP_003169396.1 CDS CAP2UW1_4226 NC_013194.1 4801806 4802465 D PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_2203 radical activating enzyme; radical SAM family; Radical SAM domain-containing protein 4801806..4802465 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406406 YP_003169397.1 CDS CAP2UW1_4227 NC_013194.1 4802485 4802847 D PFAM: type IV pilus assembly PilZ; KEGG: azo:azo0645 hypothetical protein; type IV pilus assembly PilZ 4802485..4802847 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406407 YP_003169398.1 CDS CAP2UW1_4228 NC_013194.1 4803065 4804276 R PFAM: glutaredoxin; glutaredoxin 2; KEGG: mca:MCA2787 hypothetical protein; glutaredoxin complement(4803065..4804276) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406408 YP_003169399.1 CDS CAP2UW1_4229 NC_013194.1 4804587 4805612 R PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA6362 putative endonuclease; restriction endonuclease complement(4804587..4805612) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406409 YP_003169400.1 CDS CAP2UW1_4230 NC_013194.1 4805709 4809569 R PFAM: helicase domain protein; type III restriction protein res subunit; thiopurine S-methyltransferase; peptidase S24 and S26 domain protein; DEAD/DEAH box helicase domain protein; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; SMART: DEAD-like helicases; KEGG: vvu:VV1_2188 helicase-related protein; type III restriction protein res subunit complement(4805709..4809569) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406410 YP_003169401.1 CDS CAP2UW1_4231 NC_013194.1 4809592 4810371 R KEGG: hau:Haur_4781 putative restriction endonuclease; putative restriction endonuclease complement(4809592..4810371) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406411 YP_003169402.1 CDS CAP2UW1_4232 NC_013194.1 4810809 4811234 D KEGG: azo:azo1674 hypothetical protein; hypothetical protein 4810809..4811234 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406412 YP_003169403.1 CDS CAP2UW1_4233 NC_013194.1 4811273 4811545 D hypothetical protein 4811273..4811545 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406413 YP_003169404.1 CDS CAP2UW1_4234 NC_013194.1 4811634 4813835 D KEGG: dar:Daro_3202 ABC transporter, transmembrane region:ABC transporter related; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; type I secretion system ATPase 4811634..4813835 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406414 YP_003169405.1 CDS CAP2UW1_4235 NC_013194.1 4813847 4815250 D TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3201 type I secretion membrane fusion protein, HlyD; HlyD family type I secretion membrane fusion protein 4813847..4815250 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406415 YP_003169406.1 CDS CAP2UW1_4236 NC_013194.1 4815252 4815863 D PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; KEGG: dar:Daro_3200 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 4815252..4815863 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406416 YP_003169407.1 CDS CAP2UW1_4237 NC_013194.1 4815970 4831071 D TIGRFAM: outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; KEGG: she:Shewmr4_0384 putative outer membrane adhesin like protein; outer membrane adhesin like protein 4815970..4831071 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406417 YP_003169408.1 CDS CAP2UW1_4238 NC_013194.1 4831078 4833015 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: dar:Daro_3354 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase with extracellular sensor complement(4831078..4833015) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406418 YP_003169409.1 CDS CAP2UW1_4239 NC_013194.1 4833051 4833689 R KEGG: dar:Daro_3353 hypothetical protein; hypothetical protein complement(4833051..4833689) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406419 YP_003169410.1 CDS CAP2UW1_4240 NC_013194.1 4833879 4835447 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_0706 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein 4833879..4835447 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406420 YP_003169411.1 CDS CAP2UW1_4241 NC_013194.1 4835444 4836358 D PFAM: extracellular solute-binding protein family 3; KEGG: mrd:Mrad2831_4738 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 4835444..4836358 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406421 YP_003169412.1 CDS CAP2UW1_4242 NC_013194.1 4836560 4837024 D PFAM: cyclase/dehydrase; KEGG: gdi:GDI1944 cyclase/dehydrase protein; cyclase/dehydrase 4836560..4837024 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406422 YP_003169413.1 CDS CAP2UW1_4243 NC_013194.1 4837170 4839017 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 4837170..4839017 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406423 YP_003169414.1 CDS CAP2UW1_4244 NC_013194.1 4839034 4839387 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: azo:azo2067 arsenate reductase; arsenate reductase complement(4839034..4839387) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406424 YP_003169415.1 CDS CAP2UW1_4245 NC_013194.1 4839436 4840047 R PFAM: CBS domain containing protein; KEGG: lch:Lcho_3486 CBS domain containing membrane protein; CBS domain containing membrane protein complement(4839436..4840047) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406425 YP_003169416.1 CDS CAP2UW1_4246 NC_013194.1 4840104 4841309 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3466 protein of unknown function DUF214; hypothetical protein complement(4840104..4841309) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406426 YP_003169417.1 CDS CAP2UW1_4247 NC_013194.1 4841894 4842529 D PFAM: Glutathione S-transferase domain; KEGG: pen:PSEEN1321 glutathione S-transferase; glutathione S-transferase domain-containing protein 4841894..4842529 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406427 YP_003169418.1 CDS CAP2UW1_4248 NC_013194.1 4842555 4844624 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: pfo:PflO1_5689 pyridoxamine 5'-phosphate oxidase-like, FMN-binding; pyridoxamine 5'-phosphate oxidase-like protein 4842555..4844624 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406428 YP_003169419.1 CDS CAP2UW1_4249 NC_013194.1 4844694 4846133 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 4844694..4846133 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406429 YP_003169420.1 CDS CAP2UW1_4250 NC_013194.1 4846380 4847870 R PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: sfu:Sfum_2866 response regulator receiver protein; putative sigma54 specific transcriptional regulator complement(4846380..4847870) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406430 YP_003169421.1 CDS CAP2UW1_4251 NC_013194.1 4848033 4848422 D hypothetical protein 4848033..4848422 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406431 YP_003169422.1 CDS CAP2UW1_4252 NC_013194.1 4848419 4849819 D PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: scl:sce5304 hypothetical protein; Radical SAM domain-containing protein 4848419..4849819 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406432 YP_003169423.1 CDS CAP2UW1_4253 NC_013194.1 4850085 4850984 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: mpt:Mpe_A3317 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4850085..4850984) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406433 YP_003169424.1 CDS CAP2UW1_4254 NC_013194.1 4851118 4851405 D PFAM: transposase IS3/IS911 family protein; KEGG: pna:Pnap_0430 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 4851118..4851405 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406434 YP_003169425.1 CDS CAP2UW1_4255 NC_013194.1 4851521 4851787 D KEGG: pna:Pnap_0429 integrase, catalytic region; integrase catalytic subunit 4851521..4851787 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406435 YP_003169426.1 CDS CAP2UW1_4256 NC_013194.1 4851973 4852950 R PFAM: WD-40 repeat protein; KEGG: pmn:PMN2A_1038 WD-40 repeat; WD-40 repeat-containing protein complement(4851973..4852950) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406436 YP_003169427.1 CDS CAP2UW1_4257 NC_013194.1 4853004 4854344 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: gvi:glr0534 hypothetical protein; cobalamin synthesis protein P47K complement(4853004..4854344) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406437 YP_003169428.1 CDS CAP2UW1_4258 NC_013194.1 4854422 4855072 R PFAM: Protein of unknown function DUF1826; KEGG: mxa:MXAN_6525 hypothetical protein; hypothetical protein complement(4854422..4855072) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406438 YP_003169429.1 CDS CAP2UW1_4259 NC_013194.1 4855109 4856437 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(4855109..4856437) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406439 YP_003169430.1 CDS CAP2UW1_4260 NC_013194.1 4856440 4857000 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pap:PSPA7_6342 hypothetical protein; transferase hexapeptide repeat containing protein complement(4856440..4857000) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406440 YP_003169431.1 CDS CAP2UW1_4261 NC_013194.1 4857004 4857585 R KEGG: rme:Rmet_1101 6-pyruvoyl-tetrahydropterin synthase-like protein; 6-pyruvoyl-tetrahydropterin synthase-like protein complement(4857004..4857585) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406441 YP_003169432.1 CDS CAP2UW1_4262 NC_013194.1 4857579 4859504 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: pfl:PFL_6184 threonyl-tRNA synthetase; threonyl-tRNA synthetase complement(4857579..4859504) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406442 YP_003169433.1 CDS CAP2UW1_4263 NC_013194.1 4859529 4859780 R PFAM: protein of unknown function DUF37; KEGG: ace:Acel_2159 protein of unknown function DUF37; hypothetical protein complement(4859529..4859780) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406443 YP_003169434.1 CDS cysS NC_013194.1 4859777 4861174 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(4859777..4861174) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406444 YP_003169435.1 CDS CAP2UW1_4265 NC_013194.1 4861171 4862277 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: azo:azo0455 putative cobalmin snthesis protein; cobalamin synthesis protein P47K complement(4861171..4862277) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406445 YP_003169436.1 CDS CAP2UW1_4266 NC_013194.1 4862298 4862390 R hypothetical protein complement(4862298..4862390) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406446 YP_003169437.1 CDS CAP2UW1_4267 NC_013194.1 4862443 4862862 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: azo:azo0248 probable DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(4862443..4862862) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406447 YP_003169438.1 CDS CAP2UW1_4268 NC_013194.1 4862866 4864098 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: mfa:Mfla_1231 cobalamin synthesis protein, P47K; cobalamin synthesis protein P47K complement(4862866..4864098) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406448 YP_003169439.1 CDS CAP2UW1_4269 NC_013194.1 4864095 4864523 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: pfl:PFL_6181 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase complement(4864095..4864523) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406449 YP_003169440.1 CDS CAP2UW1_4270 NC_013194.1 4864565 4865110 D KEGG: bxe:Bxe_B1776 ferric uptake regulator (FUR) family; putative Fur family ferric uptake regulator 4864565..4865110 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406450 YP_003169441.1 CDS CAP2UW1_4272 NC_013194.1 4865550 4865759 D hypothetical protein 4865550..4865759 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406452 YP_003169442.1 CDS CAP2UW1_4273 NC_013194.1 4866449 4868371 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: lch:Lcho_0199 putative serine protein kinase, PrkA; putative serine protein kinase, PrkA 4866449..4868371 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406453 YP_003169443.1 CDS CAP2UW1_4275 NC_013194.1 4869326 4869523 R KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein complement(4869326..4869523) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406455 YP_003169444.1 CDS CAP2UW1_4276 NC_013194.1 4869520 4870314 R SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase complement(4869520..4870314) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406456 YP_003169445.1 CDS CAP2UW1_4279 NC_013194.1 4871376 4871843 D KEGG: nha:Nham_2789 hypothetical protein; hypothetical protein 4871376..4871843 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406459 YP_003169446.1 CDS CAP2UW1_4280 NC_013194.1 4871840 4872124 D hypothetical protein 4871840..4872124 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406460 YP_003169447.1 CDS CAP2UW1_4281 NC_013194.1 4872121 4874199 D PFAM: Resolvase domain; KEGG: bpt:Bpet1409 transposase; Resolvase domain-containing protein 4872121..4874199 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406461 YP_003169448.1 CDS CAP2UW1_4282 NC_013194.1 4875127 4875651 R KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein complement(4875127..4875651) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406462 YP_003169449.1 CDS CAP2UW1_4283 NC_013194.1 4876306 4877874 D PFAM: SpoVR family protein; KEGG: mpt:Mpe_A3777 hypothetical protein; SpoVR family protein 4876306..4877874 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406463 YP_003169450.1 CDS CAP2UW1_4285 NC_013194.1 4878305 4878565 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_3012 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(4878305..4878565) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406465 YP_003169451.1 CDS CAP2UW1_4286 NC_013194.1 4878680 4879618 R KEGG: dar:Daro_1389 DedA; DedA complement(4878680..4879618) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406466 YP_003169452.1 CDS CAP2UW1_4287 NC_013194.1 4879753 4880961 R PFAM: protein of unknown function DUF214; KEGG: dar:Daro_3463 protein of unknown function DUF214; hypothetical protein complement(4879753..4880961) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406467 YP_003169453.1 CDS CAP2UW1_4288 NC_013194.1 4880943 4881668 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3462 ABC transporter related; ABC transporter complement(4880943..4881668) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406468 YP_003169454.1 CDS CAP2UW1_4289 NC_013194.1 4881672 4882832 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dar:Daro_3461 secretion protein HlyD; RND family efflux transporter MFP subunit complement(4881672..4882832) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406469 YP_003169455.1 CDS CAP2UW1_4290 NC_013194.1 4883154 4885139 D PFAM: UvrD/REP helicase; KEGG: dar:Daro_3879 ATP-dependent DNA helicase Rep; UvrD/REP helicase 4883154..4885139 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406470 YP_003169456.1 CDS CAP2UW1_4291 NC_013194.1 4885330 4885683 D KEGG: pfl:PFL_5995 alginate regulatory protein AlgP; alginate regulatory protein AlgP 4885330..4885683 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406471 YP_003169457.1 CDS CAP2UW1_4292 NC_013194.1 4886047 4888356 D PFAM: N-6 DNA methylase; KEGG: glo:Glov_2201 N-6 DNA methylase; N-6 DNA methylase 4886047..4888356 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406472 YP_003169458.1 CDS CAP2UW1_4293 NC_013194.1 4888353 4889474 D PFAM: protein of unknown function DUF1016; KEGG: mma:MM_2979 hypothetical protein; hypothetical protein 4888353..4889474 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406473 YP_003169459.1 CDS CAP2UW1_4294 NC_013194.1 4889471 4890898 D KEGG: glo:Glov_2200 type I restriction-modification system specificity subunit; type I restriction-modification system specificity subunit 4889471..4890898 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406474 YP_003169460.1 CDS CAP2UW1_4295 NC_013194.1 4890895 4891536 D KEGG: spc:Sputcn32_3528 hypothetical protein; hypothetical protein 4890895..4891536 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406475 YP_003169461.1 CDS CAP2UW1_4296 NC_013194.1 4891554 4892615 D PFAM: Appr-1-p processing domain protein; KEGG: neu:NE1364 Appr-1-p processing enzyme family; Appr-1-p processing domain-containing protein 4891554..4892615 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406476 YP_003169462.1 CDS CAP2UW1_4297 NC_013194.1 4892612 4895647 D PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: glo:Glov_2197 protein of unknown function DUF450; hypothetical protein 4892612..4895647 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406477 YP_003169463.1 CDS CAP2UW1_4298 NC_013194.1 4895653 4896432 D PFAM: polysaccharide deacetylase; KEGG: dvu:DVU0116 polysaccharide deacetylase family protein; polysaccharide deacetylase 4895653..4896432 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406478 YP_003169464.1 CDS CAP2UW1_4299 NC_013194.1 4896429 4896842 D PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_1416 probable acetyltransferase; GCN5-like N-acetyltransferase 4896429..4896842 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406479 YP_003169465.1 CDS CAP2UW1_4300 NC_013194.1 4896839 4898470 D PFAM: major facilitator superfamily MFS_1; KEGG: lch:Lcho_4105 major facilitator superfamily MFS_1; major facilitator superfamily protein 4896839..4898470 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406480 YP_003169466.1 CDS CAP2UW1_4301 NC_013194.1 4898516 4898962 R PFAM: cytochrome c class I; KEGG: dar:Daro_3877 cytochrome c, class I; cytochrome c class I complement(4898516..4898962) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406481 YP_003169467.1 CDS CAP2UW1_4302 NC_013194.1 4899283 4899996 R KEGG: dar:Daro_3509 putative thiol:disulphide interchange protein (periplasmic); putative thiol:disulfide interchange protein (periplasmic) complement(4899283..4899996) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406483 YP_003169468.1 CDS CAP2UW1_4303 NC_013194.1 4900030 4901199 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: dar:Daro_3510 hypothetical protein; ubiquinone biosynthesis hydroxylase family protein complement(4900030..4901199) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406484 YP_003169469.1 CDS CAP2UW1_4304 NC_013194.1 4901285 4901665 D hypothetical protein 4901285..4901665 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406485 YP_003169470.1 CDS CAP2UW1_4305 NC_013194.1 4901805 4902122 R PFAM: PsiF repeat protein; KEGG: pap:PSPA7_5596 hypothetical protein; PsiF repeat-containing protein complement(4901805..4902122) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406486 YP_003169471.1 CDS CAP2UW1_4306 NC_013194.1 4902170 4903114 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(4902170..4903114) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406487 YP_003169472.1 CDS CAP2UW1_4307 NC_013194.1 4903118 4903564 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: azo:azo0502 protein-Npi-phosphohistidine-sugar phosphotransferase; PTS IIA-like nitrogen-regulatory protein PtsN complement(4903118..4903564) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406488 YP_003169473.1 CDS CAP2UW1_4308 NC_013194.1 4903654 4903986 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: dar:Daro_4148 SSU ribosomal protein S30P / sigma 54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(4903654..4903986) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406489 YP_003169474.1 CDS CAP2UW1_4309 NC_013194.1 4904003 4905430 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(4904003..4905430) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406490 YP_003169475.1 CDS CAP2UW1_4310 NC_013194.1 4905512 4906246 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4150 ABC transporter related; ABC transporter complement(4905512..4906246) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406491 YP_003169476.1 CDS CAP2UW1_4311 NC_013194.1 4906249 4906698 R PFAM: regulatory protein RecX; KEGG: cvi:CV_1606 regulatory protein RecX; regulatory protein RecX complement(4906249..4906698) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406492 YP_003169477.1 CDS CAP2UW1_4312 NC_013194.1 4906705 4907721 R KEGG: eba:ebA3396 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein complement(4906705..4907721) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406493 YP_003169478.1 CDS CAP2UW1_4313 NC_013194.1 4907881 4909881 R KEGG: azo:azo3335 putative type 4 pilus biogenesis; Tfp pilus assembly protein FimV-like protein complement(4907881..4909881) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406494 YP_003169479.1 CDS CAP2UW1_4314 NC_013194.1 4909945 4910454 R PFAM: CinA domain protein; KEGG: dar:Daro_3874 CinA, C-terminal; CinA domain-containing protein complement(4909945..4910454) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406495 YP_003169480.1 CDS CAP2UW1_4315 NC_013194.1 4910451 4910918 R PFAM: phosphatidylglycerophosphatase A; KEGG: dar:Daro_3741 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A complement(4910451..4910918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406496 YP_003169481.1 CDS CAP2UW1_4316 NC_013194.1 4910929 4911894 R KEGG: dar:Daro_3740 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(4910929..4911894) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406497 YP_003169482.1 CDS CAP2UW1_4317 NC_013194.1 4911948 4912442 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dar:Daro_3739 NusB antitermination factor; NusB antitermination factor complement(4911948..4912442) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406498 YP_003169483.1 CDS ribH NC_013194.1 4912442 4912957 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(4912442..4912957) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406499 YP_003169484.1 CDS CAP2UW1_4319 NC_013194.1 4912957 4914090 R TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: eba:ebA3567 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(4912957..4914090) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406500 YP_003169485.1 CDS CAP2UW1_4320 NC_013194.1 4914603 4916255 D PFAM: response regulator receiver; KEGG: tva:TVAG_368240 plectin, putative Pfam: Vicilin_N PROSITE: ALA_RICH GLU_RICH LYS_RICH SER_RICH; response regulator receiver protein 4914603..4916255 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406501 YP_003169486.1 CDS CAP2UW1_4321 NC_013194.1 4916377 4916826 D KEGG: eba:ebA6064 probable thioredoxin-like protein; hypothetical protein 4916377..4916826 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406502 YP_003169487.1 CDS CAP2UW1_4322 NC_013194.1 4916823 4917737 R PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0083 beta-lactamase-like; beta-lactamase domain-containing protein complement(4916823..4917737) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406503 YP_003169488.1 CDS CAP2UW1_4323 NC_013194.1 4917737 4917928 R KEGG: azo:azo0397 hypothetical protein; hypothetical protein complement(4917737..4917928) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406504 YP_003169489.1 CDS CAP2UW1_4324 NC_013194.1 4917931 4918155 R PFAM: protein of unknown function DUF1289; KEGG: dar:Daro_0084 protein of unknown function DUF1289; hypothetical protein complement(4917931..4918155) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406505 YP_003169490.1 CDS CAP2UW1_4325 NC_013194.1 4918305 4919237 R PFAM: pyruvate carboxyltransferase; KEGG: dar:Daro_0086 hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase complement(4918305..4919237) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406506 YP_003169491.1 CDS CAP2UW1_4326 NC_013194.1 4919234 4921276 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: dar:Daro_0089 3-methylcrotonoyl-CoA carboxylase, alpha subunit; carbamoyl-phosphate synthase L chain ATP-binding complement(4919234..4921276) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406507 YP_003169492.1 CDS CAP2UW1_4327 NC_013194.1 4921288 4922082 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gme:Gmet_3291 enoyl-CoA hydratase/isomerase; Enoyl-CoA hydratase/isomerase complement(4921288..4922082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406508 YP_003169493.1 CDS CAP2UW1_4328 NC_013194.1 4922092 4923711 R PFAM: carboxyl transferase; KEGG: dar:Daro_0092 carboxyl transferase; propionyl-CoA carboxylase complement(4922092..4923711) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406509 YP_003169494.1 CDS CAP2UW1_4329 NC_013194.1 4923711 4924313 R PFAM: DSBA oxidoreductase; KEGG: dar:Daro_0094 DsbA oxidoreductase; DSBA oxidoreductase complement(4923711..4924313) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406510 YP_003169495.1 CDS CAP2UW1_4330 NC_013194.1 4924404 4925555 R KEGG: noc:Noc_1940 hypothetical protein; hypothetical protein complement(4924404..4925555) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406511 YP_003169496.1 CDS CAP2UW1_4331 NC_013194.1 4925738 4926184 R PFAM: thioesterase superfamily protein; KEGG: eba:ebA5330 conserved hypothetical protein, of thioesterase family; thioesterase superfamily protein complement(4925738..4926184) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406512 YP_003169497.1 CDS CAP2UW1_4332 NC_013194.1 4926186 4927322 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: dar:Daro_0096 acyl-CoA dehydrogenase, C-terminal:acyl-CoA dehydrogenase, central region:acyl-CoA dehydrogenase, N-terminal; acyl-CoA dehydrogenase domain-containing protein complement(4926186..4927322) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406513 YP_003169498.1 CDS CAP2UW1_4333 NC_013194.1 4927319 4928263 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_0097 protein of unknown function DUF6, transmembrane; hypothetical protein complement(4927319..4928263) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406514 YP_003169499.1 CDS CAP2UW1_4334 NC_013194.1 4928355 4929500 R PFAM: GCN5-related N-acetyltransferase; carbonic anhydrase; KEGG: dar:Daro_0099 GCN5-related N-acetyltransferase:carbonic anhydrase, prokaryotic and plant; carbonate dehydratase complement(4928355..4929500) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406515 YP_003169500.1 CDS CAP2UW1_4335 NC_013194.1 4929609 4930772 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mpt:Mpe_A3360 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(4929609..4930772) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406516 YP_003169501.1 CDS CAP2UW1_4336 NC_013194.1 4930754 4931254 R PFAM: thioesterase superfamily protein; KEGG: azo:azo0392 hypothetical protein; thioesterase superfamily protein complement(4930754..4931254) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406517 YP_003169502.1 CDS CAP2UW1_4337 NC_013194.1 4931462 4932532 D PFAM: beta-lactamase domain protein; KEGG: dar:Daro_0103 beta-lactamase-like; beta-lactamase domain-containing protein 4931462..4932532 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406518 YP_003169503.1 CDS CAP2UW1_4338 NC_013194.1 4932538 4934373 D PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: dar:Daro_0104 poly(R)-hydroxyalkanoic acid synthase, class I; poly-beta-hydroxybutyrate polymerase domain-containing protein 4932538..4934373 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406519 YP_003169504.1 CDS CAP2UW1_4339 NC_013194.1 4934370 4935536 D PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tbd:Tbd_1468 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase 4934370..4935536 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406520 YP_003169505.1 CDS CAP2UW1_4340 NC_013194.1 4935595 4935984 D PFAM: HNH endonuclease; KEGG: sbn:Sbal195_1577 HNH endonuclease; HNH endonuclease 4935595..4935984 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406521 YP_003169506.1 CDS CAP2UW1_4341 NC_013194.1 4936127 4936975 D KEGG: dar:Daro_0484 metal-dependent phosphohydrolase, HD subdomain; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 4936127..4936975 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406522 YP_003169507.1 CDS CAP2UW1_4342 NC_013194.1 4937058 4937567 R TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; KEGG: dar:Daro_0486 cytidyltransferase-related; cytidyltransferase-like domain-containing protein complement(4937058..4937567) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406523 YP_003169508.1 CDS CAP2UW1_4343 NC_013194.1 4937841 4938092 D KEGG: dar:Daro_2433 hypothetical protein; hypothetical protein 4937841..4938092 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406524 YP_003169509.1 CDS CAP2UW1_4344 NC_013194.1 4938106 4938930 D TIGRFAM: hydrolase, ortholog 2, exosortase system type 1 associated; KEGG: rfr:Rfer_0697 esterase/lipase/thioesterase family active site; hydrolase 4938106..4938930 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406525 YP_003169510.1 CDS CAP2UW1_4345 NC_013194.1 4938927 4939883 D TIGRFAM: hydrolase, ortholog 1, exosortase system type 1 associated; KEGG: rfr:Rfer_0694 esterase/lipase/thioesterase family active site; hydrolase 4938927..4939883 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406526 YP_003169511.1 CDS CAP2UW1_4346 NC_013194.1 4939945 4941144 D KEGG: cau:Caur_2746 secreted hydrolase-like protein; secreted hydrolase-like protein 4939945..4941144 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406527 YP_003169512.1 CDS CAP2UW1_4347 NC_013194.1 4941379 4941804 D PFAM: protein of unknown function DUF971; KEGG: dar:Daro_4118 protein of unknown function DUF971; hypothetical protein 4941379..4941804 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406528 YP_003169513.1 CDS CAP2UW1_4348 NC_013194.1 4941838 4942578 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4117 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 4941838..4942578 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406529 YP_003169514.1 CDS CAP2UW1_4349 NC_013194.1 4942595 4943506 D PFAM: import inner membrane translocase subunit Tim44; KEGG: dar:Daro_4035 mitochondrial import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 4942595..4943506 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406530 YP_003169515.1 CDS CAP2UW1_4350 NC_013194.1 4943506 4944081 D KEGG: dar:Daro_4116 protein of unknown function DUF1243; hypothetical protein 4943506..4944081 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406531 YP_003169516.1 CDS atpC NC_013194.1 4944189 4944611 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(4944189..4944611) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406532 YP_003169517.1 CDS CAP2UW1_4352 NC_013194.1 4944682 4946082 R KEGG: dar:Daro_4114 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(4944682..4946082) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406533 YP_003169518.1 CDS CAP2UW1_4353 NC_013194.1 4946120 4946983 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(4946120..4946983) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406534 YP_003169519.1 CDS CAP2UW1_4354 NC_013194.1 4947002 4948540 R KEGG: dar:Daro_4112 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit; ATP synthase F1 subunit alpha complement(4947002..4948540) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406535 YP_003169520.1 CDS CAP2UW1_4355 NC_013194.1 4948551 4949087 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: dar:Daro_4111 H+-transporting two-sector ATPase, delta (OSCP) subunit; ATP synthase F1 subunit delta complement(4948551..4949087) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406536 YP_003169521.1 CDS CAP2UW1_4356 NC_013194.1 4949092 4949562 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: dar:Daro_4110 ATP synthase F0, subunit B; ATP synthase F0 subunit B complement(4949092..4949562) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406537 YP_003169522.1 CDS CAP2UW1_4357 NC_013194.1 4949603 4949878 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: dar:Daro_4109 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(4949603..4949878) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406538 YP_003169523.1 CDS CAP2UW1_4358 NC_013194.1 4949962 4950732 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(4949962..4950732) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406539 YP_003169524.1 CDS CAP2UW1_4359 NC_013194.1 4950750 4951112 R PFAM: ATP synthase I chain; KEGG: dar:Daro_4107 ATP synthase protein I; ATP synthase I chain complement(4950750..4951112) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406540 YP_003169525.1 CDS CAP2UW1_4360 NC_013194.1 4951258 4952097 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_4106 chromosome segregation DNA-binding protein; parB-like partition protein complement(4951258..4952097) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406541 YP_003169526.1 CDS CAP2UW1_4361 NC_013194.1 4952094 4952918 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dar:Daro_4105 chromosome segregation ATPase; cobyrinic acid ac-diamide synthase complement(4952094..4952918) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406542 YP_003169527.1 CDS CAP2UW1_4362 NC_013194.1 4952920 4953567 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tbd:Tbd_2807 glucose-inhibited division protein B; methyltransferase GidB complement(4952920..4953567) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406543 YP_003169528.1 CDS CAP2UW1_4363 NC_013194.1 4953564 4955480 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(4953564..4955480) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406544 YP_003169529.1 CDS CAP2UW1_4364 NC_013194.1 4955727 4956935 R TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dar:Daro_1515 aminotransferase, class V:aromatic amino acid beta-eliminating lyase/threonine aldolase; cysteine desulfurase NifS complement(4955727..4956935) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406545 YP_003169530.1 CDS CAP2UW1_4365 NC_013194.1 4956958 4957842 R TIGRFAM: Fe-S cluster assembly protein NifU; PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: dar:Daro_1514 Fe-S cluster assembly protein NifU; Fe-S cluster assembly protein NifU complement(4956958..4957842) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406546 YP_003169531.1 CDS CAP2UW1_4366 NC_013194.1 4957853 4958179 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: dar:Daro_1513 HesB/YadR/YfhF; iron-sulfur cluster assembly accessory protein complement(4957853..4958179) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406547 YP_003169532.1 CDS CAP2UW1_4367 NC_013194.1 4958390 4958686 R TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dar:Daro_1510 4Fe-4S ferredoxin, iron-sulfur binding; ferredoxin III, nif-specific complement(4958390..4958686) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406548 YP_003169533.1 CDS CAP2UW1_4368 NC_013194.1 4958691 4958900 R PFAM: protein of unknown function DUF683; KEGG: dar:Daro_1509 protein of unknown function DUF683; hypothetical protein complement(4958691..4958900) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406549 YP_003169534.1 CDS CAP2UW1_4369 NC_013194.1 4958911 4959396 R TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269; KEGG: azo:azo0558 hypothetical protein; nitrogen fixation protein complement(4958911..4959396) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406550 YP_003169535.1 CDS CAP2UW1_4370 NC_013194.1 4959393 4959830 R PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: azo:azo0559 hypothetical sigma-E factor regulatory protein; positive regulator of sigma E, RseC/MucC complement(4959393..4959830) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406551 YP_003169536.1 CDS CAP2UW1_4371 NC_013194.1 4959827 4960246 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: azo:azo0560 conserved hypothetical NifX protein; Dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(4959827..4960246) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406552 YP_003169537.1 CDS CAP2UW1_4372 NC_013194.1 4960260 4961666 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(4960260..4961666) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406553 YP_003169538.1 CDS CAP2UW1_4373 NC_013194.1 4961659 4963083 R KEGG: dar:Daro_1501 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE complement(4961659..4963083) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406554 YP_003169539.1 CDS CAP2UW1_4374 NC_013194.1 4963337 4963870 D PFAM: NifQ family protein; KEGG: bxe:Bxe_B1476 putative nitrogen fixation-related protein(NifQ); NifQ family protein 4963337..4963870 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406555 YP_003169540.1 CDS CAP2UW1_4375 NC_013194.1 4964034 4965161 D TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: dar:Daro_1398 pyruvate carboxyltransferase; homocitrate synthase 4964034..4965161 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406556 YP_003169541.1 CDS CAP2UW1_4376 NC_013194.1 4965185 4965712 D KEGG: dar:Daro_1396 hypothetical protein; hypothetical protein 4965185..4965712 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406557 YP_003169542.1 CDS CAP2UW1_4377 NC_013194.1 4965727 4966041 D PFAM: nitrogen fixation protein NifW; KEGG: azo:azo0548 nitrogen fixation protein NifW; nitrogen fixation protein NifW 4965727..4966041 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406558 YP_003169543.1 CDS CAP2UW1_4378 NC_013194.1 4966049 4966507 D PFAM: NifZ family protein; KEGG: dar:Daro_1394 NifZ; NifZ family protein 4966049..4966507 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406559 YP_003169544.1 CDS CAP2UW1_4379 NC_013194.1 4966500 4967333 D TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azo:azo0546 probable peptidylprolyl isomerase; nitrogen fixation protein NifM 4966500..4967333 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406560 YP_003169545.1 CDS CAP2UW1_4380 NC_013194.1 4967896 4969479 D TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2036 non-ribosomal peptide synthase, amino acid adenylation domain; amino acid adenylation domain-containing protein 4967896..4969479 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406561 YP_003169546.1 CDS CAP2UW1_4381 NC_013194.1 4969476 4970978 D KEGG: lbl:LBL_1713 DltB-related membrane protein; hypothetical protein 4969476..4970978 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406562 YP_003169547.1 CDS CAP2UW1_4382 NC_013194.1 4970978 4971232 D KEGG: sat:SYN_01151 acyl carrier protein; acyl carrier protein 4970978..4971232 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406563 YP_003169548.1 CDS CAP2UW1_4383 NC_013194.1 4971596 4971955 R PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_2542 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(4971596..4971955) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406564 YP_003169549.1 CDS CAP2UW1_4384 NC_013194.1 4971952 4972218 R PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family; plasmid stabilization system complement(4971952..4972218) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406565 YP_003169550.1 CDS CAP2UW1_4385 NC_013194.1 4972231 4972848 R KEGG: xcb:XC_1522 hypothetical protein; hypothetical protein complement(4972231..4972848) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406566 YP_003169551.1 CDS CAP2UW1_4386 NC_013194.1 4973270 4977658 D KEGG: ses:SARI_03320 hypothetical protein; hypothetical protein 4973270..4977658 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406567 YP_003169552.1 CDS CAP2UW1_4387 NC_013194.1 4978322 4978600 R PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_1496 hypothetical protein; hypothetical protein complement(4978322..4978600) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406568 YP_003169553.1 CDS CAP2UW1_4388 NC_013194.1 4978632 4979306 R in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit complement(4978632..4979306) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406569 YP_003169554.1 CDS CAP2UW1_4389 NC_013194.1 4979303 4979932 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: eba:ebA2581 electron transport complex protein RnfG (nitrogen fixation protein RnfG; RnfABCDGE type electron transport complex subunit G complement(4979303..4979932) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406570 YP_003169555.1 CDS CAP2UW1_4390 NC_013194.1 4979929 4981011 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: dar:Daro_1495 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D complement(4979929..4981011) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406571 YP_003169556.1 CDS CAP2UW1_4391 NC_013194.1 4981008 4982534 R TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: dar:Daro_1494 electron transport complex, RnfABCDGE type, C subunit; RnfABCDGE type electron transport complex subunit C complement(4981008..4982534) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406572 YP_003169557.1 CDS CAP2UW1_4392 NC_013194.1 4982574 4983119 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: dar:Daro_1493 electron transport complex, RnfABCDGE type, B subunit; RnfABCDGE type electron transport complex subunit B complement(4982574..4983119) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406573 YP_003169558.1 CDS CAP2UW1_4393 NC_013194.1 4983129 4983710 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: eba:ebA2575 predicted electron transport subunit of NADH:ferredoxin oxidoreductase; RnfABCDGE type electron transport complex subunit A complement(4983129..4983710) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406574 YP_003169559.1 CDS CAP2UW1_4394 NC_013194.1 4983977 4985536 D KEGG: dar:Daro_1488 PAS; TIGRFAM: PAS sensor protein; nitrogen fixation negative regulator NifL; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 4983977..4985536 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406575 YP_003169560.1 CDS CAP2UW1_4395 NC_013194.1 4985533 4987143 D KEGG: dar:Daro_1487 helix-turn-helix, fis-type:Nif-specific regulatory protein; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family transcriptional regulator NifA 4985533..4987143 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406576 YP_003169561.1 CDS CAP2UW1_4396 NC_013194.1 4987174 4987449 D hypothetical protein 4987174..4987449 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406577 YP_003169562.1 CDS CAP2UW1_4398 NC_013194.1 4988757 4989005 R KEGG: rso:RSp1252 putative transcription regulator protein; XRE family transcriptional regulator complement(4988757..4989005) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406579 YP_003169563.1 CDS CAP2UW1_4400 NC_013194.1 4990054 4990764 D KEGG: bch:Bcen2424_1681 hypothetical protein; hypothetical protein 4990054..4990764 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406581 YP_003169564.1 CDS CAP2UW1_4401 NC_013194.1 4990870 4991799 D KEGG: ecm:EcSMS35_4789 hypothetical protein; hypothetical protein 4990870..4991799 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406582 YP_003169565.1 CDS CAP2UW1_4402 NC_013194.1 4991894 4993156 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: neu:NE2190 integron/retron-type RNA-directed DNA polymerase (reverse transcriptase); part of type II intron; RNA-directed DNA polymerase complement(4991894..4993156) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406583 YP_003169566.1 CDS CAP2UW1_4403 NC_013194.1 4993275 4993922 D hypothetical protein 4993275..4993922 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406584 YP_003169567.1 CDS CAP2UW1_4404 NC_013194.1 4994027 4994701 D KEGG: bcs:BCAN_B0379 hypothetical protein; hypothetical protein 4994027..4994701 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406585 YP_003169568.1 CDS CAP2UW1_4406 NC_013194.1 4995776 4996300 D KEGG: drm:Dred_0563 hypothetical protein; hypothetical protein 4995776..4996300 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406587 YP_003169569.1 CDS CAP2UW1_4407 NC_013194.1 4996430 4997752 D PFAM: Integrase catalytic region; KEGG: gka:GK0880 IS1604-like transposase; integrase catalytic subunit 4996430..4997752 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406588 YP_003169570.1 CDS CAP2UW1_4408 NC_013194.1 4997755 4998549 D SMART: AAA ATPase; KEGG: gka:GK1917 hypothetical protein; AAA ATPase 4997755..4998549 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406589 YP_003169571.1 CDS CAP2UW1_4409 NC_013194.1 4998546 4998743 D KEGG: cti:RALTA_p0541 hypothetical protein; hypothetical protein 4998546..4998743 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406590 YP_003169572.1 CDS CAP2UW1_4410 NC_013194.1 4999415 5000200 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: eba:p2A369 transposase/IS protein; transposase/IS protein 4999415..5000200 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406591 YP_003169573.1 CDS CAP2UW1_4412 NC_013194.1 5001158 5001457 D KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein 5001158..5001457 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406593 YP_003169574.1 CDS CAP2UW1_4414 NC_013194.1 5002517 5002855 D KEGG: sal:Sala_0530 hypothetical protein; hypothetical protein 5002517..5002855 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406595 YP_003169575.1 CDS CAP2UW1_4415 NC_013194.1 5003144 5003386 D PFAM: protein of unknown function DUF433; KEGG: rrs:RoseRS_0695 protein of unknown function DUF433; hypothetical protein 5003144..5003386 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406596 YP_003169576.1 CDS CAP2UW1_4416 NC_013194.1 5003383 5003739 D KEGG: rrs:RoseRS_0696 hypothetical protein; hypothetical protein 5003383..5003739 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406597 YP_003169577.1 CDS CAP2UW1_4417 NC_013194.1 5004291 5005292 D KEGG: sal:Sala_0530 hypothetical protein; hypothetical protein 5004291..5005292 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406598 YP_003169578.1 CDS CAP2UW1_4418 NC_013194.1 5005507 5005701 D hypothetical protein 5005507..5005701 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406599 YP_003169579.1 CDS CAP2UW1_4419 NC_013194.1 5005915 5006286 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rle:RL3157 putative monooxygenase; Antibiotic biosynthesis monooxygenase 5005915..5006286 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406600 YP_003169580.1 CDS CAP2UW1_4420 NC_013194.1 5006392 5006796 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: net:Neut_1850 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 5006392..5006796 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406601 YP_003169581.1 CDS CAP2UW1_4422 NC_013194.1 5007699 5009216 D TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: azo:azo0523 nitrogen fixation protein; nitrogenase cofactor biosynthesis protein NifB 5007699..5009216 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406603 YP_003169582.1 CDS CAP2UW1_4423 NC_013194.1 5009227 5009505 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: psa:PST_1305a ferredoxin-like protein; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein 5009227..5009505 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406604 YP_003169583.1 CDS CAP2UW1_4424 NC_013194.1 5009508 5009999 D TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: dar:Daro_1452 nitrogenase-associated protein; nitrogenase-associated protein 5009508..5009999 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406605 YP_003169584.1 CDS CAP2UW1_4425 NC_013194.1 5009977 5011251 D PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: dar:Daro_1451 beta-lactamase-like:flavodoxin/nitric oxide synthase; beta-lactamase domain-containing protein 5009977..5011251 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406606 YP_003169585.1 CDS CAP2UW1_4426 NC_013194.1 5011281 5011568 D PFAM: ferredoxin; KEGG: dar:Daro_1450 ferredoxin; ferredoxin 5011281..5011568 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406607 YP_003169586.1 CDS CAP2UW1_4427 NC_013194.1 5011606 5011980 D PFAM: ferredoxin; KEGG: dar:Daro_1449 ferredoxin; ferredoxin 5011606..5011980 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406608 YP_003169587.1 CDS CAP2UW1_4428 NC_013194.1 5011977 5012888 D KEGG: dar:Daro_1447 ADP-ribosylation/crystallin J1; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; PFAM: ADP-ribosylation/Crystallin J1; ADP-ribosyl-(dinitrogen reductase) hydrolase 5011977..5012888 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406609 YP_003169588.1 CDS CAP2UW1_4429 NC_013194.1 5013397 5013867 D KEGG: bxe:Bxe_B0809 hypothetical protein; hypothetical protein 5013397..5013867 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406610 YP_003169589.1 CDS CAP2UW1_4430 NC_013194.1 5014088 5015467 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 5014088..5015467 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406611 YP_003169590.1 CDS CAP2UW1_4431 NC_013194.1 5015471 5016688 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 5015471..5016688 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406612 YP_003169591.1 CDS CAP2UW1_4432 NC_013194.1 5016675 5017481 D TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: psa:PST_2653 Na(+)-translocating NADH-quinone reductase subunit C; NADH:ubiquinone oxidoreductase subunit C 5016675..5017481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406613 YP_003169592.1 CDS CAP2UW1_4433 NC_013194.1 5017478 5018158 D Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 5017478..5018158 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406614 YP_003169593.1 CDS CAP2UW1_4434 NC_013194.1 5018192 5018800 D TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: psa:PST_2651 Na(+)-translocating NADH-quinone reductase subunit E; NADH:ubiquinone oxidoreductase subunit E 5018192..5018800 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406615 YP_003169594.1 CDS CAP2UW1_4435 NC_013194.1 5018813 5020036 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 5018813..5020036 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406616 YP_003169595.1 CDS CAP2UW1_4436 NC_013194.1 5020058 5020297 D KEGG: mca:MCA2383 hypothetical protein; hypothetical protein 5020058..5020297 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406617 YP_003169596.1 CDS CAP2UW1_4437 NC_013194.1 5020420 5024289 R KEGG: dvl:Dvul_2248 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase complement(5020420..5024289) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406618 YP_003169597.1 CDS CAP2UW1_4438 NC_013194.1 5024437 5025012 R PFAM: response regulator receiver; KEGG: rru:Rru_A0659 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; response regulator receiver protein complement(5024437..5025012) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406619 YP_003169598.1 CDS CAP2UW1_4440 NC_013194.1 5025737 5026594 R KEGG: dar:Daro_1418 hypothetical protein; hypothetical protein complement(5025737..5026594) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406621 YP_003169599.1 CDS CAP2UW1_4441 NC_013194.1 5027378 5027623 D KEGG: eba:ebB112 hypothetical protein; hypothetical protein 5027378..5027623 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406622 YP_003169600.1 CDS CAP2UW1_4442 NC_013194.1 5027620 5028015 D PFAM: PilT protein domain protein; KEGG: eba:ebB111 predicted nucleic acid-binding protein,contains PIN domain; PilT protein domain-containing protein 5027620..5028015 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406623 YP_003169601.1 CDS CAP2UW1_4443 NC_013194.1 5028367 5028978 R PFAM: Cold-shock protein DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; KEGG: mpt:Mpe_A2028 cold-shock DNA-binding domain; cold-shock DNA-binding domain-containing protein complement(5028367..5028978) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406624 YP_003169602.1 CDS CAP2UW1_4445 NC_013194.1 5029266 5029475 R hypothetical protein complement(5029266..5029475) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406626 YP_003169603.1 CDS CAP2UW1_4446 NC_013194.1 5029712 5030578 R PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: dar:Daro_1416 hypothetical protein; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase complement(5029712..5030578) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406627 YP_003169604.1 CDS CAP2UW1_4447 NC_013194.1 5030746 5031654 D KEGG: dar:Daro_1415 nitrogenase iron protein subunit NifH; TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; nitrogenase iron protein 5030746..5031654 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406628 YP_003169605.1 CDS CAP2UW1_4448 NC_013194.1 5031736 5033229 D KEGG: dar:Daro_1414 nitrogenase molybdenum-iron protein alpha chain:nitrogenase component I, alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein alpha chain 5031736..5033229 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406629 YP_003169606.1 CDS CAP2UW1_4449 NC_013194.1 5033293 5034861 D KEGG: dar:Daro_1413 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein beta chain 5033293..5034861 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406630 YP_003169607.1 CDS CAP2UW1_4450 NC_013194.1 5034944 5035168 D TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; KEGG: azo:azo0541 nitrogen fixation protein [nifT]; nitrogen fixation protein FixT 5034944..5035168 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406631 YP_003169608.1 CDS CAP2UW1_4451 NC_013194.1 5035192 5035389 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: azo:azo0542 FdxN protein; 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein 5035192..5035389 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406632 YP_003169609.1 CDS CAP2UW1_4452 NC_013194.1 5035407 5036132 D PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dar:Daro_1410 dinitrogenase iron-molybdenum cofactor biosynthesis; Dinitrogenase iron-molybdenum cofactor biosynthesis protein 5035407..5036132 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406633 YP_003169610.1 CDS CAP2UW1_4453 NC_013194.1 5036133 5037119 D KEGG: dar:Daro_1407 hypothetical protein; hypothetical protein 5036133..5037119 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406634 YP_003169611.1 CDS CAP2UW1_4454 NC_013194.1 5037130 5037966 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pna:Pnap_2037 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter substrate-binding protein 5037130..5037966 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406635 YP_003169612.1 CDS CAP2UW1_4455 NC_013194.1 5037968 5038636 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azo:azo3838 putative molybdenum transport system permease protein; molybdate ABC transporter inner membrane subunit 5037968..5038636 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406636 YP_003169613.1 CDS CAP2UW1_4456 NC_013194.1 5038633 5039703 D KEGG: pna:Pnap_2041 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase subunit 5038633..5039703 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406637 YP_003169614.1 CDS CAP2UW1_4457 NC_013194.1 5039896 5040459 D TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bmu:Bmul_4495 peroxiredoxin; peroxiredoxin 5039896..5040459 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406638 YP_003169615.1 CDS CAP2UW1_4458 NC_013194.1 5040593 5042152 D TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfo:PflO1_2924 pyridine nucleotide-disulphide oxidoreductase, class-II, active site; alkyl hydroperoxide reductase subunit F 5040593..5042152 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406639 YP_003169616.1 CDS CAP2UW1_4460 NC_013194.1 5042557 5044311 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: syx:SynWH7803_1732 sulfate permease, MFS superfamily; sulfate transporter 5042557..5044311 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406641 YP_003169617.1 CDS CAP2UW1_4461 NC_013194.1 5044322 5044612 D hypothetical protein 5044322..5044612 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406642 YP_003169618.1 CDS CAP2UW1_4462 NC_013194.1 5044609 5046330 D PFAM: TPR repeat-containing protein; response regulator receiver; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_4101 response regulator receiver:tetratricopeptide TPR_4; response regulator receiver protein 5044609..5046330 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406643 YP_003169619.1 CDS CAP2UW1_4463 NC_013194.1 5046327 5047256 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ava:Ava_4466 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(5046327..5047256) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406644 YP_003169620.1 CDS CAP2UW1_4464 NC_013194.1 5047384 5047944 D KEGG: bxe:Bxe_B0809 hypothetical protein; hypothetical protein 5047384..5047944 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406645 YP_003169621.1 CDS CAP2UW1_4465 NC_013194.1 5047907 5048665 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4099 ABC transporter related; ABC transporter complement(5047907..5048665) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406646 YP_003169622.1 CDS CAP2UW1_4466 NC_013194.1 5048662 5050434 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related; ABC transporter complement(5048662..5050434) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406647 YP_003169623.1 CDS CAP2UW1_4467 NC_013194.1 5050431 5051465 R PFAM: inner-membrane translocator; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related; inner-membrane translocator complement(5050431..5051465) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406648 YP_003169624.1 CDS CAP2UW1_4468 NC_013194.1 5051618 5052772 R PFAM: Extracellular ligand-binding receptor; KEGG: dar:Daro_4096 extracellular ligand-binding receptor; Extracellular ligand-binding receptor complement(5051618..5052772) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406649 YP_003169625.1 CDS CAP2UW1_4469 NC_013194.1 5053050 5053829 R PFAM: protein of unknown function DUF81; KEGG: sml:Smlt4655 putative transmembrane protein; hypothetical protein complement(5053050..5053829) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406650 YP_003169626.1 CDS CAP2UW1_4470 NC_013194.1 5053830 5054591 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: azo:azo2633 probable trans-aconitate 2-methyltransferase; trans-aconitate 2-methyltransferase complement(5053830..5054591) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406651 YP_003169627.1 CDS trmE NC_013194.1 5054651 5056027 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(5054651..5056027) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406652 YP_003169628.1 CDS CAP2UW1_4472 NC_013194.1 5055993 5057675 R PFAM: 60 kDa inner membrane insertion protein; KEGG: dar:Daro_4201 protein translocase subunit YidC; 60 kDa inner membrane insertion protein complement(5055993..5057675) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406653 YP_003169629.1 CDS CAP2UW1_4473 NC_013194.1 5057702 5057911 R PFAM: protein of unknown function DUF37; KEGG: azo:azo3990 hypothetical protein; hypothetical protein complement(5057702..5057911) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406654 YP_003169630.1 CDS CAP2UW1_4474 NC_013194.1 5057916 5058314 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: dar:Daro_4203 ribonuclease P protein; ribonuclease P protein component complement(5057916..5058314) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406655 CAP2UW1_R0001 tRNA CAP2UW1_R0001 NC_013194.1 22372 22447 D tRNA-Ala 22372..22447 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402142 CAP2UW1_R0002 tRNA CAP2UW1_R0002 NC_013194.1 22473 22548 D tRNA-Glu 22473..22548 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402143 CAP2UW1_R0003 tRNA CAP2UW1_R0003 NC_013194.1 151551 151626 D tRNA-Ala 151551..151626 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402255 CAP2UW1_R0004 tRNA CAP2UW1_R0004 NC_013194.1 252477 252550 R tRNA-Thr complement(252477..252550) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402334 CAP2UW1_R0005 tRNA CAP2UW1_R0005 NC_013194.1 283938 284013 D tRNA-Phe 283938..284013 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402359 CAP2UW1_R0007 tRNA CAP2UW1_R0007 NC_013194.1 648278 648354 R tRNA-Met complement(648278..648354) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402666 CAP2UW1_R0009 tRNA CAP2UW1_R0009 NC_013194.1 727411 727485 D tRNA-Val 727411..727485 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402742 CAP2UW1_R0010 tRNA CAP2UW1_R0010 NC_013194.1 866005 866080 R tRNA-Lys complement(866005..866080) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402876 CAP2UW1_R0011 tRNA CAP2UW1_R0011 NC_013194.1 866133 866208 R tRNA-Lys complement(866133..866208) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402877 CAP2UW1_R0012 tRNA CAP2UW1_R0012 NC_013194.1 886543 886619 D tRNA-Pro 886543..886619 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8402900 CAP2UW1_R0013 tRNA CAP2UW1_R0013 NC_013194.1 1024100 1024187 R tRNA-Ser complement(1024100..1024187) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403022 CAP2UW1_R0014 tRNA CAP2UW1_R0014 NC_013194.1 1390264 1390340 D tRNA-Pro 1390264..1390340 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403353 CAP2UW1_R0015 tRNA CAP2UW1_R0015 NC_013194.1 1433127 1433200 D tRNA-Gly 1433127..1433200 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403388 CAP2UW1_R0016 tRNA CAP2UW1_R0016 NC_013194.1 1768549 1768624 D tRNA-Gly 1768549..1768624 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403698 CAP2UW1_R0017 tRNA CAP2UW1_R0017 NC_013194.1 1768688 1768761 D tRNA-Cys 1768688..1768761 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403699 CAP2UW1_R0018 tRNA CAP2UW1_R0018 NC_013194.1 1990065 1990134 D tRNA-OTHER 1990065..1990134 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8403903 CAP2UW1_R0019 tRNA CAP2UW1_R0019 NC_013194.1 2106087 2106171 D tRNA-Leu 2106087..2106171 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404008 CAP2UW1_R0020 tRNA CAP2UW1_R0020 NC_013194.1 2148202 2148277 D tRNA-Gly 2148202..2148277 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404043 CAP2UW1_R0021 tRNA CAP2UW1_R0021 NC_013194.1 2148350 2148436 D tRNA-Leu 2148350..2148436 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404044 CAP2UW1_R0022 tRNA CAP2UW1_R0022 NC_013194.1 2591406 2591481 D tRNA-Val 2591406..2591481 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404417 CAP2UW1_R0023 tRNA CAP2UW1_R0023 NC_013194.1 2591514 2591590 D tRNA-Asp 2591514..2591590 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404418 CAP2UW1_R0024 tRNA CAP2UW1_R0024 NC_013194.1 2600193 2600269 D tRNA-Met 2600193..2600269 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404426 CAP2UW1_R0026 tRNA CAP2UW1_R0026 NC_013194.1 2602029 2602105 D tRNA-Ile 2602029..2602105 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404428 CAP2UW1_R0027 tRNA CAP2UW1_R0027 NC_013194.1 2602185 2602260 D tRNA-Ala 2602185..2602260 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404429 CAP2UW1_R0030 tRNA CAP2UW1_R0030 NC_013194.1 2620218 2620294 R tRNA-Val complement(2620218..2620294) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404448 CAP2UW1_R0031 tRNA CAP2UW1_R0031 NC_013194.1 2667364 2667439 R tRNA-His complement(2667364..2667439) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404482 CAP2UW1_R0032 tRNA CAP2UW1_R0032 NC_013194.1 2667448 2667524 R tRNA-Arg complement(2667448..2667524) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404483 CAP2UW1_R0033 tRNA CAP2UW1_R0033 NC_013194.1 2667585 2667661 R tRNA-Pro complement(2667585..2667661) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404484 CAP2UW1_R0034 tRNA CAP2UW1_R0034 NC_013194.1 2676814 2676889 D tRNA-Asn 2676814..2676889 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404491 CAP2UW1_R0035 tRNA CAP2UW1_R0035 NC_013194.1 2812418 2812489 R tRNA-Arg complement(2812418..2812489) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404602 CAP2UW1_R0036 tRNA CAP2UW1_R0036 NC_013194.1 2867343 2867429 R tRNA-Leu complement(2867343..2867429) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404650 CAP2UW1_R0037 tRNA CAP2UW1_R0037 NC_013194.1 3163008 3163084 D tRNA-Gln 3163008..3163084 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404893 CAP2UW1_R0038 tRNA CAP2UW1_R0038 NC_013194.1 3307438 3307528 R tRNA-Ser complement(3307438..3307528) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405017 CAP2UW1_R0039 tRNA CAP2UW1_R0039 NC_013194.1 3502805 3502881 D tRNA-Asp 3502805..3502881 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405204 CAP2UW1_R0040 tRNA CAP2UW1_R0040 NC_013194.1 3602126 3602215 R tRNA-Ser complement(3602126..3602215) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405289 CAP2UW1_R0041 tRNA CAP2UW1_R0041 NC_013194.1 3630096 3630171 R tRNA-Thr complement(3630096..3630171) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405315 CAP2UW1_R0042 tRNA CAP2UW1_R0042 NC_013194.1 4020401 4020476 R tRNA-Trp complement(4020401..4020476) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405671 CAP2UW1_R0043 tRNA CAP2UW1_R0043 NC_013194.1 4021776 4021850 R tRNA-Thr complement(4021776..4021850) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405673 CAP2UW1_R0044 tRNA CAP2UW1_R0044 NC_013194.1 4021890 4021963 R tRNA-Gly complement(4021890..4021963) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405674 CAP2UW1_R0045 tRNA CAP2UW1_R0045 NC_013194.1 4022014 4022098 R tRNA-Tyr complement(4022014..4022098) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405675 CAP2UW1_R0046 tRNA CAP2UW1_R0046 NC_013194.1 4155093 4155169 D tRNA-Arg 4155093..4155169 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405810 CAP2UW1_R0047 tRNA CAP2UW1_R0047 NC_013194.1 4326874 4326958 R tRNA-Leu complement(4326874..4326958) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8405951 CAP2UW1_R0049 tRNA CAP2UW1_R0049 NC_013194.1 4478675 4478761 D tRNA-Leu 4478675..4478761 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406085 CAP2UW1_R0052 tRNA CAP2UW1_R0052 NC_013194.1 4569416 4569491 R tRNA-Ala complement(4569416..4569491) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406179 CAP2UW1_R0053 tRNA CAP2UW1_R0053 NC_013194.1 4569571 4569647 R tRNA-Ile complement(4569571..4569647) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406180 CAP2UW1_R0055 tRNA CAP2UW1_R0055 NC_013194.1 4672620 4672695 R tRNA-Glu complement(4672620..4672695) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406273 CAP2UW1_R0056 tRNA CAP2UW1_R0056 NC_013194.1 4672723 4672798 R tRNA-Ala complement(4672723..4672798) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406274 CAP2UW1_R0057 tRNA CAP2UW1_R0057 NC_013194.1 4675041 4675134 D tRNA-Ser 4675041..4675134 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406277 CAP2UW1_R0058 tRNA CAP2UW1_R0058 NC_013194.1 4899088 4899164 D tRNA-Arg 4899088..4899164 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406482 CAP2UW1_R0025 rRNA CAP2UW1_R0025 NC_013194.1 2600436 2601966 D 16S ribosomal RNA 2600436..2601966 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404427 CAP2UW1_R0028 rRNA CAP2UW1_R0028 NC_013194.1 2602483 2605369 D 23S ribosomal RNA 2602483..2605369 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404430 CAP2UW1_R0029 rRNA CAP2UW1_R0029 NC_013194.1 2605503 2605615 D 5S ribosomal RNA 2605503..2605615 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8404431 CAP2UW1_R0050 rRNA CAP2UW1_R0050 NC_013194.1 4566061 4566173 R 5S ribosomal RNA complement(4566061..4566173) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406177 CAP2UW1_R0051 rRNA CAP2UW1_R0051 NC_013194.1 4566307 4569193 R 23S ribosomal RNA complement(4566307..4569193) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406178 CAP2UW1_R0054 rRNA CAP2UW1_R0054 NC_013194.1 4569710 4571240 R 16S ribosomal RNA complement(4569710..4571240) Candidatus Accumulibacter phosphatis clade IIA str. UW-1 8406181