-- dump date 20120504_140823 -- class Genbank::CDS -- table cds_note -- id note YP_001716202.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001716203.1 KEGG: dsy:DSY0002 DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_001716204.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: ldb:Ldb0004 DNA replication and repair protein RecF YP_001716205.1 KEGG: cpr:CPR_0005 hypothetical protein YP_001716206.1 KEGG: chy:CHY_2705 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_001716207.1 KEGG: pca:Pcar_1325 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001716209.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: chy:CHY_2704 DNA gyrase, A subunit YP_001716210.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_001716211.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_001716212.1 PFAM: aminotransferase, class V; KEGG: chy:CHY_2699 soluble hydrogenase, 42 kDa subunit YP_001716213.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001716214.1 KEGG: chy:CHY_2697 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa YP_001716215.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mta:Moth_0025 CMP/dCMP deaminase, zinc-binding YP_001716216.1 PFAM: glycoside hydrolase, family 31; KEGG: cyb:CYB_1375 glycosyl hydrolase, family 31 YP_001716217.1 KEGG: mta:Moth_1269 hypothetical protein YP_001716218.1 KEGG: mta:Moth_1269 hypothetical protein YP_001716219.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mbu:Mbur_1587 UDP-N-acetylglucosamine 2-epimerase YP_001716220.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: mta:Moth_0756 N-acylneuraminate-9-phosphate synthase YP_001716221.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mbu:Mbur_1591 polysaccharide biosynthesis protein CapD YP_001716222.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: mag:amb0088 CMP-N-acetylneuraminic acid synthetase YP_001716223.1 PFAM: oxidoreductase domain protein; KEGG: vvu:VV10802 predicted dehydrogenase YP_001716224.1 KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB YP_001716225.1 KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB YP_001716226.1 PFAM: oxidoreductase domain protein; KEGG: vvu:VV10801 predicted dehydrogenase YP_001716227.1 KEGG: bsu:BG10610 spore coat polysaccharide biosynthesis protein spsB YP_001716228.1 KEGG: mbu:Mbur_1588 transferase hexapeptide repeat YP_001716229.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_02688 UDP-bacillosamine synthetase YP_001716230.1 KEGG: spi:MGAS10750_Spy1694 putative surface protein YP_001716231.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001716232.1 KEGG: bha:BH0034 DNA polymerase III gamma and tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_001716233.1 PFAM: conserved hypothetical protein 103; KEGG: mta:Moth_0028 hypothetical protein YP_001716234.1 KEGG: tte:TTE0041 recombinational DNA repair protein; TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; SMART: Helix-hairpin-helix DNA-binding, class 1; Toprim sub domain protein YP_001716235.1 KEGG: mta:Moth_0031 SigmaK-factor processing regulatory BofA YP_001716236.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cya:CYA_1002 Orn/Lys/Arg decarboxylase YP_001716237.1 PFAM: thymidylate kinase; KEGG: gsu:GSU2229 thymidylate kinase YP_001716238.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: gme:Gmet_2319 DNA polymerase III delta prime subunit YP_001716239.1 PFAM: PSP1 domain protein; KEGG: chy:CHY_0052 putative tpl protein YP_001716240.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_0046 protein of unknown function UPF0011 YP_001716241.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: chy:CHY_2622 transcriptional regulator, AbrB family YP_001716242.1 TIGRFAM: methionyl-tRNA synthetase; KEGG: mta:Moth_0048 methionyl-tRNA synthetase YP_001716243.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: pca:Pcar_1695 deoxyribonuclease, TatD family YP_001716244.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: chy:CHY_2619 cob(I)alamin adenosyltransferase YP_001716245.1 PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: chy:CHY_2617 hypothetical protein YP_001716246.1 KEGG: sth:STH3249 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_001716247.1 PFAM: protein of unknown function DUF458; KEGG: chy:CHY_2615 hypothetical protein YP_001716248.1 PFAM: glycosyl transferase, family 2; KEGG: mta:Moth_0055 glycosyl transferase, family 2 YP_001716249.1 PFAM: peptidase U57, YabG; KEGG: chy:CHY_2611 YabG peptidase,U57 family YP_001716251.1 KEGG: chy:CHY_2610 hypothetical protein YP_001716252.1 PFAM: Allergen V5/Tpx-1 family protein; KEGG: mta:Moth_1705 allergen V5/TPX-1 related YP_001716253.1 KEGG: sth:STH2583 hypothetical protein YP_001716254.1 PFAM: Peptidoglycan-binding LysM; KEGG: cac:CAC2903 LysM domain containing membrane protein YP_001716256.1 PFAM: protein of unknown function DUF606; KEGG: mta:Moth_0102 protein of unknown function DUF606 YP_001716257.1 PFAM: zinc/iron permease; KEGG: swo:Swol_1139 hypothetical protein YP_001716258.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: mta:Moth_0072 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_001716259.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: chy:CHY_0189 transcriptional regulator, GntR family YP_001716260.1 KEGG: sth:STH3245 hypothetical protein YP_001716261.1 KEGG: tth:TT_P0209 hypothetical protein YP_001716262.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mta:Moth_2206 prevent-host-death protein YP_001716263.1 PFAM: SirA family protein; KEGG: wsu:WS1001 hypothetical protein YP_001716264.1 KEGG: tde:TDE2467 hypothetical protein YP_001716265.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mta:Moth_1825 transcriptional regulator, LysR family YP_001716266.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: tma:TM0356 threonine dehydratase catabolic YP_001716267.1 PFAM: SpoVG family protein; KEGG: cac:CAC3223 stage V sporulation protein G YP_001716268.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001716269.1 KEGG: chy:CHY_0193 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_001716270.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001716271.1 PFAM: peptidyl-tRNA hydrolase; KEGG: tte:TTE2567 peptidyl-tRNA hydrolase YP_001716272.1 KEGG: mta:Moth_0081 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001716273.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: chy:CHY_0202 stage V sporulation protein T YP_001716274.1 TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: mta:Moth_0084 MazG family protein YP_001716275.1 PFAM: histone family protein DNA-binding protein; KEGG: chy:CHY_0205 DNA-binding protein HU YP_001716276.1 PFAM: RNA-binding S4 domain protein; KEGG: mta:Moth_0086 RNA-binding S4 YP_001716277.1 PFAM: YabP family protein; KEGG: chy:CHY_0207 hypothetical protein YP_001716278.1 KEGG: swo:Swol_0086 hypothetical protein YP_001716281.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: mta:Moth_0090 sigma-24 (FecI-like) YP_001716282.1 PFAM: Septum formation initiator; KEGG: dsy:DSY0197 hypothetical protein YP_001716283.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001716284.1 PFAM: Ppx/GppA phosphatase; KEGG: swo:Swol_0090 Ppx/GppA phosphatase YP_001716285.1 KEGG: swo:Swol_0093 phosphoprotein phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein YP_001716286.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: mta:Moth_0104 tRNA(Ile)-lysidine synthetase-like YP_001716287.1 KEGG: chy:CHY_0214 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase YP_001716288.1 PFAM: nucleoside diphosphate kinase; KEGG: chy:CHY_0215 nucleoside diphosphate kinase YP_001716289.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: rxy:Rxyl_2519 formate--tetrahydrofolate ligase YP_001716290.1 PFAM: protein of unknown function DUF134; KEGG: mta:Moth_1655 protein of unknown function DUF134 YP_001716291.1 KEGG: dsy:DSY1890 hypothetical protein YP_001716292.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2084 4Fe-4S ferredoxin, iron-sulfur binding protein YP_001716293.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mta:Moth_1452 protein of unknown function DUF224, cysteine-rich region YP_001716295.1 KEGG: mta:Moth_0110 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_001716296.1 TIGRFAM: dihydroneopterin aldolase; KEGG: mta:Moth_0407 dihydroneopterin aldolase YP_001716297.1 KEGG: mta:Moth_0139 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_001716298.1 PFAM: Silent information regulator protein Sir2; KEGG: tte:TTE1740 NAD-dependent protein deacetylase, Sir2 family YP_001716299.1 PFAM: oxidoreductase domain protein; KEGG: mta:Moth_0140 NADP oxidoreductase, coenzyme F420-dependent YP_001716300.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001716301.1 KEGG: chy:CHY_2376 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_001716302.1 KEGG: chy:CHY_2375 aspartate 1-decarboxylase precursor; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase YP_001716303.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: mta:Moth_1516 methenyltetrahydrofolate cyclohydrolase YP_001716304.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: chy:CHY_0733 NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing YP_001716305.1 part of a complex that catalyzes the cleavage of acetyl-CoA or autotrophic acetyl-CoA synthesis; forms a heterotetramer composed of two alpha and two epsilon chains; the entire ACDS complex is composed of (alpha(2)epsilon(2))(4)-beta(8)-(gamma(1)delta(1))(8) YP_001716306.1 TIGRFAM: CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit; PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; KEGG: mmp:MMP0984 CO dehydrogenase beta subunit/acetyl-CoA synthase subunit epsilon YP_001716307.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: tte:TTE1709 CO dehydrogenase maturation factor YP_001716308.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; Protein of unknown function DUF166; KEGG: chy:CHY_0731 Fe-hydrogenase, gamma subunit YP_001716309.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_001716310.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: dps:DP0682 probable formate dehydrogenase, alpha chain YP_001716311.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_001716312.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001716313.1 PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_1227 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase YP_001716314.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001716315.1 PFAM: methyl-viologen-reducing hydrogenase, delta subunit; KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, delta subunit YP_001716316.1 KEGG: mta:Moth_1192 zinc-finger protein YP_001716317.1 PFAM: methylenetetrahydrofolate reductase; KEGG: mta:Moth_1191 methylenetetrahydrofolate reductase YP_001716318.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: chy:CHY_2385 formate--tetrahydrofolate ligase YP_001716319.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: chy:CHY_0658 DNA-binding response regulator YP_001716321.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: chy:CHY_2374 quinolinate synthetase YP_001716322.1 KEGG: swo:Swol_0105 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase YP_001716323.1 KEGG: chy:CHY_2372 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001716324.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sth:STH3157 transcription elongation factor YP_001716325.1 KEGG: mta:Moth_0143 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein YP_001716326.1 TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: dsy:DSY0216 hypothetical protein YP_001716327.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: mta:Moth_0147 dihydrouridine synthase TIM-barrel protein nifR3 YP_001716328.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rpb:RPB_2404 K+-dependent Na+/Ca+ exchanger related-protein YP_001716329.1 PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: chy:CHY_2367 hypothetical protein YP_001716330.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mta:Moth_0151 GreA/GreB family elongation factor YP_001716331.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: chy:CHY_2365 lysyl-tRNA synthetase YP_001716332.1 PFAM: DNA polymerase, beta domain protein region YP_001716333.1 PFAM: HEPN domain protein; KEGG: tth:TT_P0020 hypothetical protein YP_001716334.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA2963 iron-sulfur cluster binding protein YP_001716335.1 PFAM: Aldehyde ferredoxin oxidoreductase-like; KEGG: mac:MA2962 aldehyde ferredoxin oxidoreductase YP_001716337.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA4319 hypothetical protein YP_001716338.1 KEGG: swo:Swol_0011 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region YP_001716339.1 KEGG: mta:Moth_1296 ATPase YP_001716340.1 KEGG: mta:Moth_1299 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_001716341.1 PFAM: nitrogen regulatory protein P-II; KEGG: dsy:DSY4258 hypothetical protein YP_001716342.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: dsy:DSY4261 hypothetical protein YP_001716343.1 KEGG: mth:MTH1560 nitrogenase iron protein (nitrogenase component II) (nitrogenase reductase); TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein YP_001716344.1 PFAM: nitrogen regulatory protein P-II; KEGG: mmp:MMP0854 nitrogen regulatory protein NifI1 YP_001716345.1 PFAM: nitrogen regulatory protein P-II; KEGG: mac:MA1215 P-II family nitrogen regulatory protein YP_001716346.1 KEGG: mta:Moth_0551 nitrogenase component I, alpha chain; TIGRFAM: nitrogenase alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1 YP_001716347.1 PFAM: oxidoreductase/nitrogenase, component 1; KEGG: mmp:MMP0857 oxidoreductase, nitrogenase component 1 YP_001716348.1 PFAM: oxidoreductase/nitrogenase, component 1; KEGG: mth:MTH1565 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE YP_001716349.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU2799 radical SAM domain protein YP_001716350.1 KEGG: mta:Moth_0553 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; ExsB family protein YP_001716351.1 KEGG: mta:Moth_1707 hypothetical protein YP_001716352.1 TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit YP_001716353.1 KEGG: ade:Adeh_0477 peptidase M52, hydrogen uptake protein YP_001716354.1 KEGG: dsy:DSY4712 putative hydrogenase large subunit; TIGRFAM: hydrogenases, Fe-only; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein YP_001716355.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716356.1 PFAM: Polysulphide reductase, NrfD; KEGG: dsy:DSY4710 putative hydrogenase cytochrome b subunit YP_001716357.1 KEGG: mta:Moth_1736 hypothetical protein YP_001716358.1 catalyzes the formation of fumarate from aspartate YP_001716359.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001716361.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: mta:Moth_1277 small GTP-binding protein domain YP_001716362.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sth:STH353 putative biotin synthetase YP_001716363.1 PFAM: DsrE family protein; KEGG: mma:MM3292 hypothetical protein YP_001716364.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: cmu:TC0359 conserved hypothetical protein YP_001716366.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG13543 hypothetical protein YP_001716367.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: ctc:CTC00890 L-lysine 2,3-aminomutase YP_001716368.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sth:STH2778 hypothetical protein YP_001716369.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716370.1 KEGG: swo:Swol_1973 hypothetical protein YP_001716371.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: mma:MM0901 cation-transporting ATPase YP_001716372.1 PFAM: protein of unknown function DUF74; KEGG: afu:AF0869 hypothetical protein YP_001716374.1 PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: chy:CHY_2351 transcriptional regulator CtsR YP_001716375.1 PFAM: UvrB/UvrC protein; KEGG: mta:Moth_0160 UvrB/UvrC protein YP_001716376.1 PFAM: ATP:guanido phosphotransferase; KEGG: mta:Moth_0161 ATP:guanido phosphotransferase YP_001716377.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2348 negative regulator of genetic competence ClpC/MecB YP_001716378.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001716379.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001716380.1 PFAM: transcription factor CarD; KEGG: mta:Moth_2489 transcriptional regulator, CarD family YP_001716381.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: mta:Moth_2488 PilT protein-like YP_001716382.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: ade:Adeh_1272 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001716383.1 TIGRFAM: serine O-acetyltransferase; KEGG: chy:CHY_2339 serine acetyltransferase YP_001716384.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001716385.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001716386.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sth:STH3115 rRNA methyltransferase YP_001716387.1 PFAM: protein of unknown function DUF901; KEGG: mta:Moth_2480 protein of unknown function DUF901 YP_001716388.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001716390.1 PFAM: beta-lactamase domain protein; amino acid-binding ACT domain protein; KEGG: mma:MM0792 hypothetical protein YP_001716391.1 PFAM: Abortive infection protein; KEGG: gsu:GSU1573 CAAX amino terminal protease family protein YP_001716393.1 PFAM: type III restriction enzyme, res subunit; KEGG: bpe:BP3117 putative restriction endonuclease YP_001716394.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: xcc:XCC1068 possible DNA methylase YP_001716395.1 PFAM: transposase IS66; KEGG: swo:Swol_2211 transposase and inactivated derivatives-like protein YP_001716396.1 PFAM: IS66 Orf2 family protein; KEGG: mta:Moth_2338 IS66 Orf2 like YP_001716397.1 KEGG: swo:Swol_2209 hypothetical protein YP_001716398.1 TIGRFAM: prevent-host-death family protein; KEGG: mta:Moth_2206 prevent-host-death protein YP_001716399.1 KEGG: mta:Moth_2207 hypothetical protein YP_001716400.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001716401.1 PFAM: ribosomal protein L33; KEGG: mta:Moth_2475 ribosomal protein L33 YP_001716402.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001716403.1 KEGG: mta:Moth_2473 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_001716404.1 binds directly to 23S ribosomal RNA YP_001716405.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001716406.1 PFAM: ribosomal protein L10; KEGG: mta:Moth_2470 ribosomal protein L10 YP_001716407.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12-like; KEGG: dsy:DSY0458 50S ribosomal protein L7/L12 YP_001716408.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716409.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001716410.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001716411.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716412.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: chy:CHY_2316 ribosomal protein L7ae family protein YP_001716413.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001716414.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001716415.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; KEGG: mta:Moth_2463 translation elongation factor G YP_001716416.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001716417.1 PFAM: ribosomal protein S10; KEGG: mta:Moth_2461 ribosomal protein S10 YP_001716418.1 PFAM: ribosomal protein L3; KEGG: chy:CHY_2309 50S ribosomal protein L3 YP_001716419.1 PFAM: ribosomal protein L4/L1e; KEGG: mta:Moth_2459 ribosomal protein L4/L1e YP_001716420.1 PFAM: Ribosomal protein L25/L23; KEGG: chy:CHY_2307 ribosomal protein L23 YP_001716421.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001716422.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001716423.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001716424.1 KEGG: mta:Moth_2454 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein YP_001716425.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001716426.1 one of the stabilizing components for the large ribosomal subunit YP_001716427.1 PFAM: ribosomal protein S17; KEGG: chy:CHY_2300 30S ribosomal protein S17 YP_001716428.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001716429.1 KEGG: mta:Moth_2449 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein YP_001716430.1 PFAM: ribosomal protein L5; KEGG: dsy:DSY0483 50S ribosomal protein L5 YP_001716431.1 PFAM: ribosomal protein S14; KEGG: chy:CHY_2296 ribosomal protein S14 YP_001716432.1 PFAM: ribosomal protein S8; KEGG: chy:CHY_2295 ribosomal protein S8 YP_001716433.1 PFAM: ribosomal protein L6; KEGG: mta:Moth_2445 ribosomal protein L6 YP_001716434.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: chy:CHY_2293 ribosomal protein L18 YP_001716435.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5-like; KEGG: mta:Moth_2443 ribosomal protein S5 YP_001716436.1 PFAM: ribosomal protein L30; KEGG: gka:GK0124 50S ribosomal protein L30 YP_001716437.1 PFAM: ribosomal protein L15; KEGG: chy:CHY_2290 ribosomal protein L15 YP_001716438.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001716439.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: mta:Moth_2438 methionine aminopeptidase, type I YP_001716440.1 KEGG: chy:CHY_2287 hypothetical protein YP_001716441.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: mta:Moth_2436 translation initiation factor IF-1 YP_001716442.1 PFAM: ribosomal protein L36; KEGG: ssp:SSP0686 50S ribosomal protein L36 YP_001716443.1 PFAM: ribosomal protein S13; KEGG: chy:CHY_2284 30S ribosomal protein S13 YP_001716444.1 PFAM: ribosomal protein S11; KEGG: chy:CHY_2283 30S ribosomal protein S11 YP_001716445.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: mta:Moth_2432 ribosomal protein S4 YP_001716446.1 KEGG: chy:CHY_2281 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase, alpha subunit domain protein; RNA polymerase, dimerisation; RNA polymerase, insert; SMART: RNA polymerase, RpoA/D/Rpb3-type YP_001716447.1 PFAM: ribosomal protein L17; KEGG: swo:Swol_2303 ribosomal protein L17 YP_001716448.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001716449.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001716450.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716452.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bcl:ABC2496 DNA/RNA helicase, SNF2 family YP_001716453.1 PFAM: protein of unknown function DUF191; KEGG: bha:BH2689 hypothetical protein YP_001716454.1 KEGG: bha:BH2690 hypothetical protein YP_001716455.1 PFAM: histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase family protein YP_001716456.1 PFAM: S-layer domain protein; KEGG: mta:Moth_0748 hypothetical protein YP_001716457.1 PFAM: CBS domain containing protein; KEGG: swo:Swol_1883 CBS domain containing membrane protein YP_001716458.1 PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk YP_001716459.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001716461.1 PFAM: glycosyl transferase, group 1; protein of unknown function UPF0131; KEGG: dde:Dde_0881 hypothetical protein YP_001716464.1 PFAM: UspA domain protein; KEGG: mja:MJ0531 hypothetical protein YP_001716465.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: gka:GK0928 sodium:solute symporter YP_001716466.1 catalyzes the ATP-dependent transport of cobalt YP_001716467.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mag:amb4337 ABC-type cobalt transport system, permease component CbiQ and related transporters YP_001716468.1 KEGG: chy:CHY_1630 cobalt ABC transporter, ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001716469.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ttj:TTHA0369 oxidoreductase, short-chain dehydrogenase/reductase family YP_001716470.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pae:PA2103 probable molybdopterin biosynthesis protein MoeB YP_001716471.1 PFAM: thiamineS protein; KEGG: dvu:DVU1180 hypothetical protein YP_001716472.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: gme:Gmet_1045 aldehyde ferredoxin oxidoreductase YP_001716473.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dsy:DSY0307 hypothetical protein YP_001716474.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001716475.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: swo:Swol_1854 hypothetical protein YP_001716476.1 KEGG: cac:CAC0641 hypothetical protein YP_001716477.1 KEGG: dsy:DSY4865 hypothetical protein; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_001716478.1 PFAM: protein of unknown function DUF214; KEGG: swo:Swol_0246 protein of unknown function DUF214 YP_001716479.1 PFAM: peptidase M23B; KEGG: chy:CHY_0169 peptidase, M23/M37 family YP_001716480.1 KEGG: chy:CHY_0170 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001716481.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: chy:CHY_0171 hypothetical protein YP_001716482.1 KEGG: chy:CHY_0178 hypothetical protein YP_001716483.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sth:STH2917 uracil-DNA glycosylase YP_001716485.1 KEGG: gka:GK3226 ribose ABC transporter (ribose-binding protein) YP_001716486.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001716487.1 KEGG: mta:Moth_0255 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001716488.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: mta:Moth_0256 excinuclease ABC, C subunit YP_001716489.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: mta:Moth_0257 HAD-superfamily hydrolase subfamily IIB YP_001716490.1 PFAM: ROK family protein; KEGG: chy:CHY_0270 glucokinase YP_001716491.1 TIGRFAM: glycogen debranching enzyme, putative; PFAM: Amylo-alpha-1,6-glucosidase; KEGG: mba:Mbar_A1369 glycogen debranching enzyme YP_001716492.1 catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate YP_001716493.1 PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: dsy:DSY4845 hypothetical protein YP_001716494.1 PFAM: protein of unknown function DUF199; KEGG: dsy:DSY4843 hypothetical protein YP_001716495.1 KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001716496.1 PFAM: phosphoglycerate kinase; KEGG: chy:CHY_0281 phosphoglycerate kinase YP_001716497.1 PFAM: triosephosphate isomerase; KEGG: chy:CHY_0282 triosephosphate isomerase YP_001716498.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001716499.1 PFAM: enolase; KEGG: dsy:DSY4838 hypothetical protein YP_001716500.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: chy:CHY_0285 preprotein translocase, SecG subunit YP_001716501.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001716502.1 PFAM: protein of unknown function DUF81; KEGG: dvu:DVU0770 hypothetical protein YP_001716503.1 KEGG: pca:Pcar_2084 related to ABC-transporter, periplasmic substrate-binding protein YP_001716504.1 PFAM: transcriptional regulator PadR family protein; KEGG: mta:Moth_2210 transcriptional regulator, PadR-like family YP_001716505.1 KEGG: bcz:BCZK0288 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001716507.1 PFAM: Appr-1-p processing domain protein; KEGG: rxy:Rxyl_0659 Appr-1-p processing YP_001716509.1 KEGG: atc:AGR_pAT_37 hypothetical protein YP_001716510.1 PFAM: nitroreductase; KEGG: tko:TK0840 NAD(P)H-flavin oxidoreductase YP_001716511.1 PFAM: PilT protein domain protein; KEGG: ape:APE0472 hypothetical protein YP_001716513.1 PFAM: Integrase, catalytic region; KEGG: dde:Dde_3592 putative transposase protein YP_001716514.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: mag:amb4172 predicted membrane-bound metal-dependent hydrolase YP_001716516.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: ana:alr1337 probable ribosylglycoyhdrolase YP_001716517.1 PFAM: thioesterase superfamily protein; KEGG: chy:CHY_0287 thioesterase family protein YP_001716518.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: mta:Moth_0272 metal dependent phosphohydrolase YP_001716519.1 KEGG: gka:GK3044 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein YP_001716520.1 PFAM: ribosomal protein L13; KEGG: chy:CHY_2274 ribosomal protein L13 YP_001716521.1 PFAM: ribosomal protein S9; KEGG: mta:Moth_2424 ribosomal protein S9 YP_001716522.1 PFAM: cell wall hydrolase/autolysin; KEGG: mta:Moth_2296 N-acetylmuramoyl-L-alanine amidase YP_001716525.1 PFAM: protein of unknown function DUF114; KEGG: chy:CHY_2465 hypothetical protein YP_001716526.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mta:Moth_0820 lysine exporter protein (LysE/YggA) YP_001716527.1 PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: mta:Moth_2295 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B YP_001716528.1 PFAM: Radical SAM domain protein; KEGG: tte:TTE1955 pyruvate-formate lyase-activating enzyme YP_001716529.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001716530.1 KEGG: sth:STH2890 putative amino-acid acetyltransferase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_001716531.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001716532.1 TIGRFAM: acetylornithine and succinylornithine aminotransferases; PFAM: aminotransferase class-III; KEGG: mta:Moth_2287 acetylornithine and succinylornithine aminotransferases YP_001716533.1 KEGG: tko:TK0871 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_001716534.1 PFAM: argininosuccinate synthase; KEGG: chy:CHY_2260 argininosuccinate synthase YP_001716535.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mta:Moth_2284 argininosuccinate lyase YP_001716536.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH2528 RNA polymerase ECF-type sigma factor YP_001716538.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001716539.1 PFAM: branched-chain amino acid transport; KEGG: mta:Moth_1242 branched-chain amino acid transport YP_001716540.1 PFAM: AzlC family protein; KEGG: mta:Moth_1241 AzlC-like YP_001716541.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001716542.1 KEGG: mma:MM0670 acetolactate synthase large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein YP_001716543.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: chy:CHY_0518 acetolactate synthase III small subunit YP_001716544.1 KEGG: dsy:DSY1368 hypothetical protein; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase, catalytic domain protein YP_001716545.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: mta:Moth_2255 2-isopropylmalate synthase YP_001716546.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001716547.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: pab:PAB0892 3-isopropylmalate dehydratase small subunit YP_001716548.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: mta:Moth_2251 2-isopropylmalate synthase/homocitrate synthase YP_001716549.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001716550.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: chy:CHY_2010 D-fructose-6-phosphate amidotransferase YP_001716551.1 KEGG: ttj:TTHA1014 hypothetical protein YP_001716553.1 PFAM: protein of unknown function DUF86; KEGG: mac:MA1852 hypothetical protein YP_001716554.1 PFAM: DNA polymerase, beta domain protein region; KEGG: mta:Moth_2352 DNA polymerase, beta-like region YP_001716555.1 KEGG: ade:Adeh_3854 hypothetical protein YP_001716558.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: shm:Shewmr7_0098 formate dehydrogenase, beta subunit YP_001716560.1 PFAM: L-lactate permease; KEGG: rpb:RPB_2258 L-lactate permease YP_001716561.1 PFAM: PilT protein domain protein; KEGG: ttj:TTHA0033 hypothetical protein YP_001716562.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gka:GK2336 hypothetical protein YP_001716563.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sus:Acid_4616 response regulator receiver modulated diguanylate cyclase YP_001716564.1 KEGG: pca:Pcar_0070 hypothetical protein YP_001716565.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: chy:CHY_1103 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001716566.1 KEGG: gka:GK0317 hypothetical protein YP_001716567.1 KEGG: gka:GK0318 hypothetical protein YP_001716568.1 KEGG: gka:GK0319 hypothetical protein YP_001716569.1 KEGG: gka:GK0320 hypothetical protein YP_001716570.1 PFAM: copper amine oxidase domain protein; KEGG: tte:TTE0524 hypothetical protein YP_001716571.1 KEGG: tel:tll1579 hypothetical protein YP_001716572.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi02528 putative oligopeptide ABC transporter (permease); RBL00341 YP_001716573.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mac:MA0880 dipeptide ABC transporter, dipeptide-binding protein YP_001716574.1 KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_001716575.1 KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_001716576.1 PFAM: LmbE family protein; KEGG: dge:Dgeo_2557 hypothetical protein YP_001716577.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mac:MA3048 oligopeptide ABC transporter, solute-binding protein YP_001716578.1 KEGG: swo:Swol_2010 hypothetical protein YP_001716579.1 KEGG: gvi:gll2740 unknown protein YP_001716580.1 KEGG: swo:Swol_2077 hypothetical protein YP_001716582.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716583.1 KEGG: fra:Francci3_2839 McrBC 5-methylcytosine restriction system component-like YP_001716584.1 KEGG: gvi:glr2425 hypothetical protein YP_001716585.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: sat:SYN_01853 MerR family regulatory protein YP_001716586.1 PFAM: PilT protein domain protein; KEGG: syf:Synpcc7942_1203 hypothetical protein YP_001716587.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: mta:Moth_0196 transcriptional regulator, AbrB family YP_001716588.1 PFAM: PilT protein domain protein; KEGG: mta:Moth_0195 PilT protein-like YP_001716589.1 PFAM: pyruvate carboxyltransferase; KEGG: dsy:DSY3883 hypothetical protein YP_001716590.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bld:BLi01154 similar to molybdate-binding protein; RBL03054 YP_001716591.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0230 molybdenum transport permease YP_001716592.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3396 hypothetical protein YP_001716593.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: dsy:DSY4326 hypothetical protein YP_001716594.1 PFAM: CopG domain protein DNA-binding domain protein YP_001716595.1 PFAM: PilT protein domain protein; KEGG: mta:Moth_0688 PilT protein-like YP_001716596.1 PFAM: isochorismatase hydrolase; KEGG: gsu:GSU1002 isochorismatase family protein YP_001716597.1 KEGG: chy:CHY_2195 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; CHASE4 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region YP_001716598.1 PFAM: protein of unknown function DUF82; KEGG: mbo:Mb0594 hypothetical protein YP_001716600.1 KEGG: mta:Moth_2156 transposase and inactivated derivatives IS5 family-like YP_001716601.1 KEGG: chy:CHY_2258 hypothetical protein YP_001716603.1 KEGG: mta:Moth_0200 hypothetical protein YP_001716604.1 PFAM: protein of unknown function DUF1659; KEGG: mta:Moth_1793 hypothetical protein YP_001716606.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716607.1 PFAM: protein of unknown function DUF342; KEGG: mta:Moth_0823 protein of unknown function DUF342 YP_001716609.1 PFAM: RDD domain containing protein; KEGG: tdn:Tmden_0769 RDD protein YP_001716610.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716611.1 KEGG: ter:Tery_2448 hypothetical protein YP_001716612.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: btk:BT9727_3894 conserved hypothetical protein, possible ErfK/SrfK protein YP_001716613.1 PFAM: MscS Mechanosensitive ion channel; KEGG: gka:GK3486 small conductance mechanosensitive ion channel, MscS family YP_001716614.1 PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_1790 copper amine oxidase-like YP_001716616.1 PFAM: 3D domain protein; KEGG: bcl:ABC1928 peptidoglycan-binding domain-containing protein YP_001716617.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mxa:MXAN_6727 transporter, EamA family YP_001716618.1 PFAM: protein of unknown function DUF81; KEGG: pca:Pcar_3013 hypothetical protein YP_001716619.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_1595 transcriptional regulator, GntR family YP_001716620.1 PFAM: putative RNA methylase; KEGG: tvo:TVN1413 adenine-specific DNA methylase YP_001716621.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sit:TM1040_1749 methyltransferase type 12 YP_001716623.1 KEGG: dsy:DSY1632 hypothetical protein YP_001716624.1 KEGG: mta:Moth_1580 accessory gene regulator B YP_001716625.1 KEGG: dsy:DSY4414 hypothetical protein YP_001716626.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ecp:ECP_2262 sensor protein AtoS YP_001716627.1 KEGG: cyb:CYB_2503 hypothetical protein YP_001716628.1 KEGG: tte:TTE0483 hypothetical protein YP_001716629.1 PFAM: protein of unknown function DUF362; KEGG: pca:Pcar_2517 hypothetical protein YP_001716630.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: ade:Adeh_0385 AAA ATPase, ClpA/B YP_001716631.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: pen:PSEEN4896 curved DNA-binding protein YP_001716632.1 PFAM: heat shock protein Hsp20; KEGG: gsu:GSU0538 heat shock protein, HSP20 family YP_001716633.1 PFAM: regulatory protein, MerR; KEGG: hhe:HH1641 putative heat shock transcriptional regulator YP_001716634.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sat:SYN_02934 hypothetical cytosolic protein YP_001716636.1 KEGG: bha:BH2358 hypothetical protein YP_001716637.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; domain of unknown function DUF1731; KEGG: mca:MCA0496 conserved hypothetical protein TIGR01777 YP_001716638.1 PFAM: protein of unknown function UPF0153; KEGG: cch:Cag_1215 hypothetical protein YP_001716640.1 KEGG: swo:Swol_2460 hypothetical protein YP_001716641.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: swo:Swol_2462 conserved protein, putative ferredoxin-type protein NapH YP_001716643.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gka:GK2502 ribosomal protein L11 methyltransferase YP_001716644.1 KEGG: bca:BCE_3142 hypothetical protein YP_001716645.1 PFAM: protein of unknown function DUF218; KEGG: sus:Acid_3847 protein of unknown function DUF218 YP_001716646.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; KEGG: chy:CHY_0657 sensor histidine kinase YP_001716647.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: chy:CHY_0658 DNA-binding response regulator YP_001716648.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: aba:Acid345_4518 phosphopantethiene--protein transferase domain YP_001716649.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: mta:Moth_2168 hypothetical protein YP_001716650.1 KEGG: mta:Moth_2167 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001716651.1 PFAM: nitrogen regulatory protein P-II; KEGG: mhu:Mhun_0339 nitrogen regulatory protein P-II (GlnB, GlnK) YP_001716652.1 PFAM: protein of unknown function DUF1538; KEGG: chy:CHY_1193 hypothetical protein YP_001716653.1 PFAM: protein of unknown function DUF1538; KEGG: chy:CHY_1192 hypothetical protein YP_001716654.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: mta:Moth_1000 hypothetical protein YP_001716655.1 PFAM: protein of unknown function UPF0027; KEGG: tte:TTE0709 hypothetical protein YP_001716656.1 KEGG: tde:TDE1033 polyA polymerase family protein; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain YP_001716657.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_001716658.1 PFAM: NLP/P60 protein; Peptidoglycan-binding LysM; KEGG: chy:CHY_0674 putative cell-wall associated endopeptidase YP_001716659.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: sth:STH539 magnesium transporter YP_001716660.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mta:Moth_0094 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001716661.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: sth:STH568 DNA repair and genetic recombination protein YP_001716662.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001716663.1 KEGG: mta:Moth_0604 glycyl-tRNA synthetase, beta subunit YP_001716664.1 PFAM: CBS domain containing protein; regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: chy:CHY_0441 CBS domain protein YP_001716665.1 PFAM: protein of unknown function DUF299; KEGG: chy:CHY_0442 hypothetical protein YP_001716666.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: mta:Moth_1078 2',5' RNA ligase YP_001716667.1 PFAM: NADPH-dependent FMN reductase; KEGG: mta:Moth_0621 NADPH-dependent FMN reductase YP_001716668.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001716669.1 KEGG: mta:Moth_0623 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_001716670.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001716671.1 KEGG: sat:SYN_00317 predicted DNA-binding protein with PD1-like DNA-binding motif YP_001716674.1 PFAM: protein of unknown function DUF633; KEGG: mta:Moth_0625 protein of unknown function DUF633 YP_001716675.1 PFAM: protein of unknown function DUF34; KEGG: lca:LSEI_1499 hypothetical protein YP_001716676.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: xcb:XC_0664 site-specific recombinase YP_001716677.1 PFAM: phage integrase family protein; KEGG: mta:Moth_0361 phage integrase YP_001716678.1 PFAM: protein of unknown function UPF0150; KEGG: tma:TM1321 hypothetical protein YP_001716679.1 KEGG: sde:Sde_2749 hypothetical protein YP_001716680.1 KEGG: sde:Sde_2749 hypothetical protein YP_001716681.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: swo:Swol_2010 hypothetical protein YP_001716682.1 KEGG: psb:Psyr_0099 hypothetical protein YP_001716683.1 KEGG: eli:ELI_07890 predicted ATP-dependent endonuclease, OLD family protein YP_001716684.1 PFAM: protein of unknown function DUF1156; KEGG: ter:Tery_4275 protein of unknown function DUF1156 YP_001716685.1 KEGG: rme:Rmet_5467 hypothetical protein YP_001716686.1 KEGG: swo:Swol_2007 ATPase (AAA+ superfamily)-like protein YP_001716688.1 KEGG: mta:Moth_1799 hypothetical protein YP_001716689.1 KEGG: mta:Moth_1798 hypothetical protein YP_001716693.1 PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_1797 protein of unknown function UPF0150 YP_001716694.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: deh:cbdb_A1133 tyrosine recombinase XerD YP_001716695.1 PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0167 protein of unknown function UPF0150 YP_001716696.1 PFAM: aldo/keto reductase; KEGG: ana:all2277 hypothetical protein YP_001716698.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: gme:Gmet_1749 hypothetical protein YP_001716699.1 KEGG: gka:GK3079 phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_001716700.1 PFAM: copper amine oxidase domain protein; KEGG: mmp:MMP0813 hypothetical protein YP_001716701.1 KEGG: dps:DP2829 hypothetical protein YP_001716702.1 putative metalloprotease YP_001716704.1 KEGG: swo:Swol_1054 signal transduction histidine kinase nitrogen specific-like protein; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001716706.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein YP_001716707.1 PFAM: conserved hypothetical protein 245; KEGG: bte:BTH_I2266 hypothetical protein YP_001716708.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sth:STH2818 RNA methyltransferase YP_001716709.1 KEGG: chy:CHY_1266 hypothetical protein YP_001716710.1 PFAM: TatD-related deoxyribonuclease; KEGG: chy:CHY_1267 hydrolase, TatD family YP_001716711.1 KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; diguanylate cyclase; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region YP_001716712.1 KEGG: mba:Mbar_A1016 type I restriction-modification system methyltransferase subunit YP_001716713.1 KEGG: cch:Cag_1906 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_001716714.1 KEGG: mja:MJ0165 hypothetical protein YP_001716715.1 PFAM: glutaredoxin YP_001716716.1 PFAM: Rubrerythrin; KEGG: mta:Moth_1286 rubrerythrin YP_001716717.1 PFAM: transcription activator, effector binding; KEGG: mth:MTH628 hypothetical protein YP_001716718.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: chy:CHY_1575 potassium uptake protein KtrB YP_001716719.1 PFAM: Coat F domain protein; KEGG: chy:CHY_2473 hypothetical protein YP_001716720.1 KEGG: chy:CHY_2474 hypothetical protein YP_001716722.1 KEGG: chy:CHY_1398 tRNA-i(6)A37 thiotransferase enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_001716723.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: chy:CHY_1992 hydrogenase gamma subunit YP_001716724.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mta:Moth_1517 glutamate synthase (NADPH), homotetrameric YP_001716725.1 KEGG: dsy:DSY1594 hypothetical protein YP_001716726.1 This protein performs the mismatch recognition step during the DNA repair process YP_001716727.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: sth:STH1748 DNA mismatch repair protein YP_001716728.1 KEGG: swo:Swol_0978 hypothetical protein YP_001716729.1 KEGG: sth:STH1747 tRNA isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001716730.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: chy:CHY_1393 hfq protein YP_001716731.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; Aluminium resistance family protein; KEGG: bcl:ABC2180 aluminum resistance protein YP_001716732.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: pca:Pcar_0114 thioredoxin reductase (NADPH) YP_001716733.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: xtr:549387 nitrilase family, member 2 Pfam: CN_hydrolase PROSITE: CN_HYDROLASE YP_001716734.1 KEGG: mta:Moth_1682 hypothetical protein YP_001716735.1 KEGG: sth:STH1713 ATP-dependent DNA helicase; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; helicase c2; DEAD-like helicases-like YP_001716736.1 KEGG: chy:CHY_0927 putative heterodisulfide reductase, C subunit YP_001716737.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_0929 putative succinate dehydrogenase, subunit C YP_001716738.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: chy:CHY_0930 heterodisulfide reductase, subunit A, selenocysteine-containing YP_001716739.1 PFAM: methyl-viologen-reducing hydrogenase, delta subunit; KEGG: chy:CHY_0931 hydrogenase, methyl-violgen-reducing type, delta subunit, selenocysteine-containing YP_001716740.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0932 putative dehydrogenase, beta subunit YP_001716741.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0933 putative anaerobic sulfite reductase, A subunit YP_001716742.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: chy:CHY_0934 hydrogenase, gamma subunit YP_001716743.1 KEGG: rme:Rmet_4485 hypothetical protein YP_001716745.1 PFAM: PemK family protein; KEGG: mta:Moth_2165 transcriptional modulator of MazE/toxin, MazF YP_001716746.1 KEGG: mta:Moth_2232 hypothetical protein YP_001716747.1 KEGG: gka:GK3321 hypothetical protein YP_001716748.1 KEGG: mta:Moth_1850 4-alpha-glucanotransferase YP_001716752.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_2407 HD domain protein YP_001716753.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001716754.1 PFAM: Mur ligase, middle domain protein; domain of unknown function DUF1727; KEGG: dsy:DSY4019 hypothetical protein YP_001716755.1 PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: dsy:DSY4018 hypothetical protein YP_001716757.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: chy:CHY_1200 PrkA protein YP_001716758.1 PFAM: protein of unknown function DUF444; KEGG: chy:CHY_1201 hypothetical protein YP_001716759.1 PFAM: SpoVR family protein; KEGG: chy:CHY_1202 stage V sporulation protein R YP_001716760.1 PFAM: Ku domain protein; KEGG: mta:Moth_1489 Ku YP_001716761.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: sth:STH2943 putative post-translocation molecular chaperone YP_001716762.1 PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sth:STH1797 ATP-dependent DNA ligase YP_001716763.1 PFAM: protein of unknown function DUF1232; KEGG: chy:CHY_0109 hypothetical protein YP_001716764.1 KEGG: mta:Moth_2082 hypothetical protein YP_001716765.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mta:Moth_1025 DNA processing protein DprA, putative YP_001716766.1 KEGG: mta:Moth_1026 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein YP_001716767.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001716768.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: mta:Moth_1028 tyrosine recombinase XerC YP_001716769.1 heat shock protein involved in degradation of misfolded proteins YP_001716770.1 heat shock protein involved in degradation of misfolded proteins YP_001716771.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001716772.1 PFAM: ribosomal protein S2; KEGG: mta:Moth_1032 ribosomal protein S2 YP_001716773.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; elongation factor Ts; KEGG: chy:CHY_1786 elongation factor Ts YP_001716774.1 TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: chy:CHY_1785 uridylate kinase YP_001716775.1 PFAM: ribosome recycling factor; KEGG: bha:BH2424 ribosome recycling factor YP_001716776.1 KEGG: mta:Moth_1038 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001716777.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mta:Moth_1039 phosphatidate cytidylyltransferase YP_001716778.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: oih:OB3276 chromate transporter YP_001716779.1 PFAM: transcriptional regulator PadR family protein; KEGG: btk:BT9727_2202 probable transcriptional regulator, PadR family YP_001716780.1 PFAM: protein of unknown function UPF0118; KEGG: mta:Moth_1040 protein of unknown function UPF0118 YP_001716781.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001716782.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: chy:CHY_1777 putative membrane-associated zinc metalloprotease YP_001716783.1 KEGG: mta:Moth_1043 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_001716784.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: chy:CHY_1775 prolyl-tRNA synthetase YP_001716785.1 PFAM: protein of unknown function DUF107; KEGG: tte:TTE0385 membrane-bound serine protease (ClpP class) YP_001716786.1 PFAM: band 7 protein; KEGG: tte:TTE0384 membrane protease subunits, stomatin/prohibitin homologs YP_001716787.1 KEGG: mta:Moth_2135 molybdenum cofactor synthesis-like; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001716788.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001716789.1 KEGG: mta:Moth_0915 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_001716790.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001716791.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: mta:Moth_0917 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001716792.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001716793.1 required for 70S ribosome assembly YP_001716794.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1743 CoA enzyme activase YP_001716795.1 KEGG: mta:Moth_1742 hypothetical protein YP_001716796.1 PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH2932 small acid-soluble spore protein YP_001716797.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001716798.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: sth:STH1438 putative RNA methylase YP_001716799.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001716800.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H YP_001716801.1 PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_0938 nucleoside recognition YP_001716802.1 PFAM: protein of unknown function DUF177; KEGG: mta:Moth_0941 protein of unknown function DUF177 YP_001716803.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001716804.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: dsy:DSY2664 hypothetical protein YP_001716805.1 KEGG: mta:Moth_0945 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III YP_001716806.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: tte:TTE1474 dioxygenases related to 2-nitropropane dioxygenase YP_001716807.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: tte:TTE1473 (acyl-carrier-protein) S-malonyltransferase YP_001716808.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: gka:GK1190 3-ketoacyl-(acyl-carrier-protein) reductase YP_001716809.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: chy:CHY_1446 acyl carrier protein YP_001716810.1 PFAM: beta-ketoacyl synthase; KEGG: mta:Moth_0950 beta-ketoacyl synthase YP_001716811.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001716812.1 KEGG: dsy:DSY2605 hypothetical protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_001716813.1 TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase, family 2; KEGG: chy:CHY_1441 5'-methylthioadenosine phosphorylase YP_001716814.1 KEGG: chy:CHY_1556 methylthioribose-1-phosphate isomerase; TIGRFAM: putative translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related YP_001716815.1 KEGG: mta:Moth_0706 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_001716816.1 PFAM: class II aldolase/adducin family protein; KEGG: dsy:DSY2602 hypothetical protein YP_001716817.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mta:Moth_0963 amidohydrolase YP_001716819.1 PFAM: aminotransferase class-III; KEGG: tte:TTE2339 PLP-dependent aminotransferases YP_001716820.1 PFAM: Bacterio-opsin activator, HTH domain protein; putative helix-turn-helix protein, YlxM/p13 family protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: tte:TTE1463 conserved hypothetical protein YP_001716821.1 KEGG: chy:CHY_1434 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase YP_001716822.1 PFAM: ribosomal protein S16; KEGG: chy:CHY_1433 ribosomal protein S16 YP_001716823.1 KEGG: chy:CHY_1432 hypothetical protein YP_001716824.1 KEGG: sth:STH1468 hypothetical protein YP_001716825.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: mta:Moth_0969 16S rRNA processing protein RimM YP_001716826.1 KEGG: mta:Moth_0970 tRNA (guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_001716827.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001716828.1 KEGG: mta:Moth_0972 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_001716829.1 PFAM: GTP-binding protein, HSR1-related; KEGG: bha:BH2476 hypothetical protein YP_001716830.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001716831.1 KEGG: sth:STH883 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) YP_001716832.1 PFAM: protein of unknown function UPF0102; KEGG: gme:Gmet_2864 hypothetical protein YP_001716833.1 PFAM: Radical SAM domain protein; KEGG: mta:Moth_1928 spore photoproduct lyase, SplB YP_001716834.1 PFAM: Extracellular ligand-binding receptor; KEGG: gka:GK3026 branched amino acid ABC transporter (substrate-binding protein) YP_001716835.1 PFAM: inner-membrane translocator; KEGG: gka:GK3025 branched amino acid ABC transporter (permease) YP_001716836.1 PFAM: inner-membrane translocator; KEGG: gka:GK3024 branched amino acid ABC transporter (permease) YP_001716837.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG YP_001716838.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK3022 branched chain amino acid ABC transporter (ATP-binding protein) YP_001716839.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ana:all0772 hypothetical protein YP_001716840.1 PFAM: beta-ketoacyl synthase; KEGG: mta:Moth_0950 beta-ketoacyl synthase YP_001716841.1 KEGG: sus:Acid_1646 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; GAF domain protein YP_001716842.1 KEGG: sat:SYN_02215 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001716843.1 KEGG: det:DET0624 response regulator; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001716844.1 PFAM: nitroreductase; KEGG: pca:Pcar_2755 hypothetical protein YP_001716845.1 KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region YP_001716846.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY2131 hypothetical protein YP_001716847.1 PFAM: Queuosine biosynthesis protein; KEGG: lpl:lp_2285 S-adenosylmethionine tRNA ribosyltransferase-isomerase YP_001716848.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: tel:tll2077 hypothetical protein YP_001716850.1 PFAM: Protein of unknown function DUF1670; KEGG: mac:MA0227 hypothetical protein YP_001716851.1 KEGG: swo:Swol_1705 hypothetical protein YP_001716852.1 KEGG: chy:CHY_0884 hypothetical protein YP_001716853.1 PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0885 hypothetical protein YP_001716854.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain) YP_001716855.1 KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region YP_001716856.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tte:TTE1047 STAS domain YP_001716857.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tte:TTE1048 STAS domain YP_001716858.1 PFAM: transposase, IS4 family protein; KEGG: rha:RHA1_ro08495 probable transposase YP_001716859.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE1051 hypothetical protein YP_001716860.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tte:TTE1052 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) YP_001716861.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: mag:amb0729 predicted signal transduction protein YP_001716864.1 KEGG: swo:Swol_2209 hypothetical protein YP_001716865.1 PFAM: IS66 Orf2 family protein; KEGG: mta:Moth_2338 IS66 Orf2 like YP_001716866.1 PFAM: transposase IS66; KEGG: swo:Swol_2211 transposase and inactivated derivatives-like protein YP_001716868.1 PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_0126 N-acetylmuramoyl-L-alanine amidase YP_001716869.1 KEGG: sty:HCM1.203 hypothetical protein YP_001716870.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpc:RPC_4152 DNA methylase N-4/N-6 YP_001716871.1 PFAM: protein of unknown function DUF450; KEGG: cpf:CPF_0250 hypothetical protein YP_001716872.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: chy:CHY_1697 putative prophage LambdaCh01, repressor protein YP_001716873.1 PFAM: NERD domain protein; KEGG: tte:TTE0673 hypothetical protein YP_001716874.1 PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_0126 N-acetylmuramoyl-L-alanine amidase YP_001716875.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: hwa:HQ2536A IS1341-type transposase YP_001716876.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: pha:PSHAa0341 transposase YP_001716877.1 KEGG: lmo:lmo0945 hypothetical protein YP_001716882.1 KEGG: pca:Pcar_0864 hypothetical protein YP_001716883.1 KEGG: gka:GK0888 transposase YP_001716885.1 KEGG: mth:MTH671 hypothetical protein YP_001716886.1 KEGG: mmp:MMP0490 hypothetical protein YP_001716887.1 PFAM: Tetratricopeptide TPR_2 repeat protein YP_001716889.1 KEGG: mta:Moth_0065 hypothetical protein YP_001716891.1 PFAM: copper amine oxidase domain protein; KEGG: tte:TTE2668 hypothetical protein YP_001716893.1 PFAM: WD40 domain protein beta Propeller; KEGG: btk:BT9727_4089 possible TolB domain protein YP_001716894.1 KEGG: chy:CHY_0782 hypothetical protein YP_001716899.1 PFAM: regulator of chromosome condensation, RCC1; copper amine oxidase domain protein; KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1 YP_001716900.1 KEGG: swo:Swol_0996 integrase, catalytic region YP_001716901.1 KEGG: swo:Swol_0995 transposase IS3/IS911 YP_001716902.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism YP_001716903.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dsy:DSY2527 hypothetical protein YP_001716904.1 KEGG: mbu:Mbur_0693 hypothetical protein YP_001716906.1 KEGG: ade:Adeh_3854 hypothetical protein YP_001716907.1 PFAM: plasmid stabilization system; KEGG: dsy:DSY1238 hypothetical protein YP_001716908.1 TIGRFAM: prevent-host-death family protein; KEGG: swo:Swol_1410 hypothetical protein YP_001716909.1 KEGG: dge:Dgeo_1531 pyrrolo-quinoline quinone YP_001716913.1 KEGG: sth:STH1736 transcriptional repressor of the SOS regulon; TIGRFAM: LexA repressor; PFAM: Penicillinase repressor; peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_001716914.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001716915.1 KEGG: mta:Moth_1230 hypothetical protein YP_001716916.1 KEGG: mta:Moth_2173 hypothetical protein YP_001716917.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_0219 IS605 family transposase YP_001716918.1 PFAM: helix-turn-helix domain protein; KEGG: mag:amb2064 predicted transcriptional regulator YP_001716919.1 PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0648 hypothetical protein YP_001716922.1 PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0167 protein of unknown function UPF0150 YP_001716923.1 KEGG: tth:TTC1705 hypothetical protein YP_001716924.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001716925.1 KEGG: mta:Moth_2150 metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; diguanylate cyclase; metal dependent phophohydrolase; PFAM: GGDEF domain containing protein; GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; HDOD; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region YP_001716926.1 KEGG: fra:Francci3_0192 N-6 DNA methylase YP_001716927.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_001716928.1 KEGG: jan:Jann_3214 ISPsy22, transposase truncated YP_001716929.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_2344 phage integrase YP_001716930.1 PFAM: helix-turn-helix domain protein; KEGG: mta:Moth_0239 transcriptional regulator, XRE family YP_001716931.1 PFAM: helix-turn-helix domain protein; KEGG: mta:Moth_0240 transcriptional regulator, XRE family YP_001716932.1 KEGG: pfo:Pfl_0133 von Willebrand factor, type A YP_001716933.1 PFAM: S-layer domain protein; KEGG: mta:Moth_0243 hypothetical protein YP_001716934.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001716936.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: dsy:DSY1997 hypothetical protein YP_001716937.1 PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase YP_001716938.1 KEGG: ppr:PBPRB0807 hypothetical maturase YP_001716939.1 PFAM: sodium/sulphate symporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bxe:Bxe_C0341 Na+/divalent anion symporter, DASS family YP_001716940.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cac:CAC0104 adenylylsulfate reductase, subunit A YP_001716941.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: afu:AF1669 adenylylsulfate reductase, subunit B YP_001716942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase, delta subunit; FAD dependent oxidoreductase; KEGG: cte:CT0867 heterodisulfide reductase, subunit A/hydrogenase, delta subunit, putative YP_001716943.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2646 transposase YP_001716945.1 PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein YP_001716946.1 PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: fra:Francci3_2344 phage integrase YP_001716947.1 KEGG: mst:Msp_0465 conserved hypothetical membrane-spanning protein YP_001716948.1 PFAM: protein of unknown function DUF262; KEGG: bce:BC0944 hypothetical protein YP_001716949.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; phosphoadenosine phosphosulfate reductase; KEGG: pai:PAE1989 hypothetical protein YP_001716950.1 KEGG: fnu:FN0446 hypothetical protein YP_001716953.1 KEGG: pai:PAE0243 ATP-dependent protease La YP_001716955.1 KEGG: bpm:BURPS1710b_A2410 hypothetical protein YP_001716956.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pab:PAB1035 hypothetical protein YP_001716958.1 KEGG: mta:Moth_1573 hypothetical protein YP_001716959.1 KEGG: ava:Ava_B0057 HNH endonuclease YP_001716961.1 KEGG: tte:TTE2045 hypothetical protein YP_001716962.1 PFAM: TRAG family protein; KEGG: tte:TTE2042 ATPase involved in conjugal plasmid transfer YP_001716963.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mth:MTH492 ATP-dependent RNA helicase, eIF-4A family YP_001716964.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001716965.1 KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001716966.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bsu:BG10458 site-specific DNA recombinase. required for the chromosomal rearrangement that creates the sigK gene by excision of the skin element between spoIVCB and spoIIIC genes (stage IV sporulation) YP_001716967.1 KEGG: gsu:GSU0489 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_001716968.1 KEGG: mta:Moth_0522 hypothetical protein YP_001716969.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; KEGG: mta:Moth_0521 diguanylate cyclase (GGDEF domain) YP_001716970.1 KEGG: swo:Swol_0011 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region YP_001716971.1 PFAM: domain of unknown function DUF1745; KEGG: mta:Moth_0690 hypothetical protein YP_001716972.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); phosphoserine phosphatase-like hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mth:MTH1626 phosphoserine phosphatase YP_001716973.1 PFAM: protein of unknown function UPF0047; KEGG: mja:MJ1081 hypothetical protein YP_001716974.1 KEGG: tte:TTE2318 hypothetical protein YP_001716975.1 PFAM: protein of unknown function DUF95, transmembrane; KEGG: pho:PH1620 185aa long hypothetical protein YP_001716976.1 PFAM: peptidase S14, ClpP; KEGG: sth:STH1558 ATP-dependent clp protease proteolytic subunit YP_001716978.1 PFAM: protein of unknown function UPF0047; KEGG: swo:Swol_1394 protein of unknown function UPF0047 YP_001716979.1 KEGG: ttj:TTHA0227 hypothetical protein YP_001716980.1 PFAM: periplasmic solute binding protein; KEGG: mta:Moth_0930 periplasmic solute binding protein YP_001716981.1 TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: mta:Moth_0571 undecaprenol kinase, putative YP_001716982.1 PFAM: protein of unknown function DUF151; KEGG: mta:Moth_1111 protein of unknown function DUF151 YP_001716983.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: mta:Moth_1072 cell division FtsK/SpoIIIE YP_001716984.1 KEGG: mta:Moth_1073 transcriptional regulator, XRE family YP_001716985.1 KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_001716986.1 KEGG: mta:Moth_1076 hypothetical protein YP_001716987.1 KEGG: tte:TTE0122 ATP-dependent Zn proteases; PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase YP_001716988.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: tte:TTE1375 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA YP_001716989.1 KEGG: chy:CHY_1166 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001716990.1 PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein YP_001716991.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: pha:PSHAa0341 transposase YP_001716992.1 KEGG: tte:TTE2548 small, acid-soluble spore proteins, alpha/be YP_001716993.1 PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_1228 copper amine oxidase-like YP_001716994.1 PFAM: protein of unknown function DUF554; KEGG: dsy:DSY5050 hypothetical protein YP_001716995.1 PFAM: glycoside hydrolase, family 57; KEGG: mta:Moth_1810 glycoside hydrolase, family 57 YP_001716996.1 KEGG: cya:CYA_1097 trehalose synthase/putative maltokinase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain YP_001716999.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: mta:Moth_0711 peptidase U61, LD-carboxypeptidase A YP_001717000.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gka:GK1311 methyl-accepting chemotaxis protein YP_001717001.1 PFAM: ABC-1 domain protein; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative YP_001717002.1 KEGG: mta:Moth_1876 hypothetical protein YP_001717003.1 PFAM: protein of unknown function DUF1405; KEGG: bce:BC1525 hypothetical membrane spanning protein YP_001717004.1 in Methanocaldococcus jannaschii this enzyme is involved in conversion of 5-phospho-D-ribose-1-pyrophosphate to ribulose-1,5-bisphosphate using NAD as a cofactor; part of RubisCO pathway YP_001717005.1 PFAM: TrkA-C domain protein; KEGG: aae:aq_2028 putative TrkA domain protein YP_001717006.1 PFAM: sodium/hydrogen exchanger; KEGG: aae:aq_2030 Na(+)/H(+) antiporter YP_001717007.1 PFAM: glycosyl transferase, group 1; KEGG: swo:Swol_1900 hypothetical protein YP_001717008.1 PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pca:Pcar_1792 phosphomannomutase YP_001717009.1 PFAM: glycosidase, PH1107-related; KEGG: rba:RB2988 hypothetical protein YP_001717010.1 PFAM: glycosyl transferase, group 1; KEGG: sat:SYN_01902 mannosyltransferase YP_001717011.1 KEGG: mta:Moth_1850 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77 YP_001717013.1 KEGG: swo:Swol_1208 hypothetical protein YP_001717014.1 KEGG: bfs:BF1207 possible phosphodiesterase/nucleotide pyrophosphatase-like protein YP_001717015.1 KEGG: mma:MM0121 carbon monoxide dehydrogenase; TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane YP_001717016.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex YP_001717017.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001717018.1 PFAM: ferredoxin; KEGG: chy:CHY_1224 iron-sulfur cluster binding protein YP_001717019.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1225 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC YP_001717020.1 part of a complex that catalyzes the cleavage of acetyl-CoA YP_001717021.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein YP_001717022.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_2084 4Fe-4S ferredoxin, iron-sulfur binding protein YP_001717023.1 PFAM: methyl-viologen-reducing hydrogenase, delta subunit; KEGG: mta:Moth_1193 methyl-viologen-reducing hydrogenase, delta subunit YP_001717024.1 KEGG: mta:Moth_1192 zinc-finger protein YP_001717025.1 PFAM: methylenetetrahydrofolate reductase; KEGG: mta:Moth_1191 methylenetetrahydrofolate reductase YP_001717026.1 KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001717027.1 PFAM: PP-loop domain protein; KEGG: swo:Swol_1011 ATPase of the pp-loop superfamily YP_001717029.1 PFAM: O-methyltransferase, family 2; KEGG: gme:Gmet_1733 O-methyltransferase, family 2 YP_001717030.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1005 CoA enzyme activase YP_001717031.1 PFAM: protein of unknown function DUF456; KEGG: dsy:DSY1414 hypothetical protein YP_001717032.1 PFAM: protein of unknown function DUF503; KEGG: mta:Moth_1881 protein of unknown function DUF503 YP_001717033.1 PFAM: transposase IS200-family protein; KEGG: tma:TM0777 transposase YP_001717034.1 PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase YP_001717037.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: chy:CHY_1235 DNA replication protein DnaD YP_001717038.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mta:Moth_1184 IstB-like ATP-binding protein YP_001717039.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase, SleB; KEGG: mta:Moth_0054 cell wall hydrolase, SleB YP_001717040.1 TIGRFAM: ATP-grasp domain protein; PFAM: CoA-binding domain protein; KEGG: mst:Msp_0919 predicted acyl-CoA synthetase YP_001717041.1 PFAM: DRTGG domain protein; KEGG: dvu:DVU1438 cobyrinic acid a,c-diamide synthase family protein YP_001717042.1 KEGG: chy:CHY_1916 stage IV sporulation protein A YP_001717045.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: sth:STH2439 single-strand DNA-specific exonuclease YP_001717046.1 KEGG: chy:CHY_2223 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_001717047.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001717048.1 PFAM: beta-lactamase domain protein; KEGG: mta:Moth_1678 beta-lactamase-like YP_001717049.1 PFAM: protein of unknown function UPF0150; KEGG: mac:MA2367 hypothetical protein YP_001717050.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001717051.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: chy:CHY_2204 aspartyl-tRNA synthetase YP_001717052.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: chy:CHY_2199 cysteine desulfurase YP_001717053.1 KEGG: chy:CHY_0535 hypothetical protein YP_001717054.1 PFAM: protein of unknown function DUF375; KEGG: swo:Swol_1439 conserved hypothetical cytosolic protein YP_001717055.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: det:DET0920 iron-sulfur cluster-binding protein YP_001717056.1 PFAM: protein of unknown function DUF39; KEGG: swo:Swol_1441 conserved hypothetical cytosolic protein YP_001717057.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001717058.1 PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein YP_001717059.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0541 oxidoreductase, aldo/keto reductase family YP_001717060.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: tte:TTE1250 putative Holliday junction resolvase YP_001717061.1 PFAM: protein of unknown function DUF1292; KEGG: chy:CHY_0543 hypothetical protein YP_001717062.1 PFAM: VanW family protein; G5 domain protein; KEGG: chy:CHY_0544 VanW domain protein YP_001717063.1 PFAM: aminodeoxychorismate lyase; KEGG: mta:Moth_1637 aminodeoxychorismate lyase YP_001717064.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: tte:TTE1258 cell division protein FtsI/penicillin-binding protein 2 YP_001717065.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: chy:CHY_0551 hypothetical protein YP_001717066.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pca:Pcar_3068 thioredoxin YP_001717067.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001717068.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001717069.1 PFAM: protein of unknown function DUF448; KEGG: dsy:DSY2519 hypothetical protein YP_001717070.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: sth:STH1521 L7AE family 50S ribosomal protein YP_001717071.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: chy:CHY_1766 translation initiation factor IF-2 YP_001717072.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001717073.1 PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like YP_001717074.1 KEGG: sth:STH1525 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein YP_001717075.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: swo:Swol_0904 riboflavin biosynthesis protein RibF YP_001717078.1 PFAM: ribosomal protein S15; KEGG: chy:CHY_1760 ribosomal protein S15 YP_001717079.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: chy:CHY_1758 polyribonucleotide nucleotidyltransferase YP_001717080.1 PFAM: polysaccharide deacetylase; KEGG: chy:CHY_1146 polysaccharide deacetylase family protein YP_001717081.1 PFAM: peptidase M16 domain protein; KEGG: dsy:DSY2506 hypothetical protein YP_001717082.1 KEGG: dsy:DSY2505 hypothetical protein; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001717083.1 KEGG: mta:Moth_1061 hypothetical protein YP_001717084.1 KEGG: swo:Swol_0912 hypothetical protein YP_001717085.1 PFAM: protein of unknown function DUF114; KEGG: dsy:DSY2217 hypothetical protein YP_001717087.1 PFAM: dihydrodipicolinate reductase; homoserine dehydrogenase, NAD-binding; KEGG: dsy:DSY2503 hypothetical protein YP_001717088.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_001717089.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_001717090.1 KEGG: chy:CHY_1154 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_001717091.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001717092.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mta:Moth_1069 hypothetical protein YP_001717093.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: mta:Moth_0868 lipoprotein signal peptidase YP_001717094.1 KEGG: gka:GK1146 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001717095.1 PFAM: Integrase, catalytic region; KEGG: dde:Dde_3592 putative transposase protein YP_001717096.1 KEGG: rxy:Rxyl_1165 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001717097.1 PFAM: type II secretion system protein; KEGG: rxy:Rxyl_1164 type II secretion system protein YP_001717098.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: rxy:Rxyl_1465 type IV pilus assembly protein PilM YP_001717099.1 PFAM: Fimbrial assembly family protein YP_001717100.1 KEGG: rxy:Rxyl_1463 Tfp pilus assembly protein PilO-like protein YP_001717101.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: mta:Moth_1554 type II secretion system protein E YP_001717102.1 KEGG: rxy:Rxyl_1158 Tfp pilus assembly protein PilE YP_001717103.1 KEGG: gka:GK0888 transposase YP_001717109.1 KEGG: lpp:lpp0993 type IV pilus (Tfp) assembly protein PilQ YP_001717111.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: mta:Moth_1550 peptidase A24A-like YP_001717112.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: mta:Moth_1554 type II secretion system protein E YP_001717113.1 KEGG: chy:CHY_0631 type IV pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_001717114.1 PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein YP_001717115.1 TIGRFAM: general secretion pathway protein H; KEGG: mta:Moth_1549 N-terminal methylation YP_001717116.1 KEGG: sat:SYN_01760 hypothetical membrane protein YP_001717117.1 KEGG: mta:Moth_1547 hypothetical protein YP_001717119.1 TIGRFAM: type IV pilus assembly protein PilM; PFAM: cell division protein FtsA; KEGG: chy:CHY_0639 type IV pilus assembly protein PilM YP_001717120.1 PFAM: Fimbrial assembly family protein; KEGG: chy:CHY_0640 type IV pilus assembly protein PilN YP_001717121.1 KEGG: chy:CHY_0641 hypothetical protein YP_001717122.1 PFAM: copper amine oxidase domain protein; KEGG: sth:STH1268 hypothetical protein YP_001717123.1 PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_2150 metal dependent phosphohydrolase YP_001717125.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001717126.1 PFAM: Bacterio-opsin activator, HTH domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mta:Moth_1582 sigma 28 (flagella/sporulation) YP_001717127.1 PFAM: PilT protein domain protein; KEGG: sto:ST1943 hypothetical virulence-associated protein YP_001717128.1 PFAM: CopG domain protein DNA-binding domain protein YP_001717129.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway YP_001717130.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; KEGG: mta:Moth_1559 HAD-superfamily phosphatase subfamily IIIA YP_001717131.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: mta:Moth_1558 shikimate 5-dehydrogenase YP_001717132.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001717133.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001717134.1 PFAM: 3-dehydroquinate synthase; KEGG: mta:Moth_1555 3-dehydroquinate synthase YP_001717135.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: chy:CHY_0630 type IV pilus assembly protein PilB YP_001717136.1 PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein YP_001717137.1 KEGG: chy:CHY_0633 general secretion pathway protein G YP_001717138.1 KEGG: mta:Moth_1549 N-terminal methylation YP_001717142.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: chy:CHY_0639 type IV pilus assembly protein PilM YP_001717143.1 PFAM: Fimbrial assembly family protein YP_001717144.1 KEGG: chy:CHY_0641 hypothetical protein YP_001717145.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mta:Moth_1542 peptidase U62, modulator of DNA gyrase YP_001717146.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mta:Moth_1541 peptidase U62, modulator of DNA gyrase YP_001717147.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001717148.1 PFAM: peptidase M24; KEGG: sth:STH1865 Xaa-Pro dipeptidase YP_001717149.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; KEGG: mta:Moth_1538 translation elongation factor P YP_001717150.1 KEGG: mta:Moth_1537 hypothetical protein YP_001717151.1 SMART: AAA ATPase; KEGG: sth:STH1862 stage III sporulation protein AA YP_001717152.1 necessary for complete engulfment of forespore YP_001717153.1 PFAM: Stage III sporulation AC family protein; KEGG: chy:CHY_2005 putative sporulation protein YP_001717154.1 KEGG: chy:CHY_2004 putative sporulation protein YP_001717155.1 KEGG: mta:Moth_1532 hypothetical protein YP_001717156.1 KEGG: mta:Moth_1531 hypothetical protein YP_001717157.1 KEGG: mta:Moth_1530 stage III sporulation protein AG YP_001717158.1 KEGG: mta:Moth_1529 hypothetical protein YP_001717159.1 catalyzes the formation of oxaloacetate from pyruvate YP_001717160.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: dsy:DSY2366 biotin carboxylase YP_001717161.1 PFAM: protein of unknown function DUF322; KEGG: mta:Moth_1523 protein of unknown function DUF322 YP_001717162.1 KEGG: mta:Moth_1522 protein of unknown function DUF322 YP_001717163.1 KEGG: chy:CHY_1995 hypothetical protein YP_001717164.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: dsy:DSY2364 hypothetical protein YP_001717165.1 KEGG: sth:STH1846 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_001717166.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: dsy:DSY2356 hypothetical protein YP_001717167.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: dsy:DSY2355 hypothetical protein YP_001717168.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: sth:STH1845 exodeoxyribonuclease VII small subunit YP_001717169.1 PFAM: Polyprenyl synthetase; KEGG: gsu:GSU1765 geranyltranstransferase YP_001717170.1 KEGG: dsy:DSY2349 hypothetical protein YP_001717171.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mta:Moth_1511 deoxyxylulose-5-phosphate synthase YP_001717172.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: tte:TTE1299 predicted rRNA methylase YP_001717173.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mta:Moth_1509 NAD(+) kinase YP_001717174.1 PFAM: arginine repressor; KEGG: dsy:DSY2344 hypothetical protein YP_001717175.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: sth:STH1835 DNA repair and genetic recombination protein YP_001717176.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: chy:CHY_1101 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_001717177.1 KEGG: mta:Moth_2009 glutamyl-tRNA(Gln) amidotransferase, A subunit; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase YP_001717178.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: chy:CHY_1103 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001717179.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_001717180.1 KEGG: chy:CHY_1105 3-isopropylmalate dehydratase, large subunit family protein; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_001717181.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: chy:CHY_1106 3-isopropylmalate dehydratase, small subunit family protein YP_001717182.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: chy:CHY_1107 putative isocitrate dehydrogenase, NAD-dependent YP_001717183.1 PFAM: glycosyl transferase, group 1; KEGG: mta:Moth_1934 glycosyl transferase, group 1 YP_001717184.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: mta:Moth_1925 nucleotidyl transferase YP_001717185.1 KEGG: chy:CHY_1546 [Ni/Fe] hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_001717186.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: chy:CHY_1545 [Ni/Fe] hydrogenase, large subunit YP_001717187.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit YP_001717188.1 KEGG: dsy:DSY4710 putative hydrogenase cytochrome b subunit YP_001717189.1 PFAM: glycoside hydrolase, family 57; KEGG: mta:Moth_1915 glycoside hydrolase, family 57 YP_001717190.1 KEGG: mta:Moth_1914 hypothetical protein YP_001717191.1 PFAM: glycoside hydrolase 15-related; KEGG: mbu:Mbur_0526 glycoside hydrolase 15-related YP_001717192.1 PFAM: CoA-binding domain protein; KEGG: sat:SYN_02520 CoA binding protein YP_001717193.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: chy:CHY_1122 RNA methyltransferase, TrmH family, group 2 YP_001717194.1 KEGG: mta:Moth_1872 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_001717195.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination YP_001717196.1 KEGG: chy:CHY_1140 hypothetical protein YP_001717197.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: chy:CHY_1141 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_001717198.1 KEGG: chy:CHY_1142 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit YP_001717199.1 KEGG: chy:CHY_1143 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase YP_001717200.1 PFAM: pyruvate kinase; HpcH/HpaI aldolase; PEP-utilising enzyme, mobile region; KEGG: mta:Moth_1867 pyruvate kinase YP_001717201.1 KEGG: sus:Acid_1106 alkaline phosphatase, DedA family YP_001717202.1 KEGG: pca:Pcar_1514 cofactor-independent phosphoglycerate mutase; TIGRFAM: phosphonopyruvate decarboxylase-related protein; proposed homoserine kinase; PFAM: metalloenzyme domain protein YP_001717203.1 PFAM: manganese and iron superoxide dismutase; KEGG: dsy:DSY4123 hypothetical protein YP_001717204.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: bcl:ABC2939 nitrogen fixation protein YP_001717205.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001717206.1 PFAM: metallophosphoesterase; KEGG: mta:Moth_1083 hypothetical protein YP_001717207.1 PFAM: Stage V sporulation protein S; KEGG: gka:GK1299 stage V sporulation protein S YP_001717208.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mta:Moth_1085 PHP-like YP_001717209.1 KEGG: dsy:DSY1934 hypothetical protein YP_001717210.1 KEGG: mta:Moth_1707 hypothetical protein YP_001717211.1 PFAM: Phosphoglycerate mutase; KEGG: mta:Moth_1105 phosphoglycerate/bisphosphoglycerate mutase YP_001717212.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: mta:Moth_0457 protein of unknown function DUF160 YP_001717213.1 KEGG: mta:Moth_1106 hypothetical protein YP_001717214.1 KEGG: chy:CHY_1176 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001717215.1 KEGG: chy:CHY_1179 hypothetical protein YP_001717216.1 PFAM: Radical SAM domain protein; KEGG: chy:CHY_0097 radical SAM domain protein YP_001717217.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001717218.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; KEGG: rxy:Rxyl_3124 homoserine kinase YP_001717219.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001717220.1 KEGG: cte:CT0862 sulfate adenylyltransferase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase YP_001717221.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: gsu:GSU2942 methyl-accepting chemotaxis protein YP_001717222.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_001717223.1 KEGG: mpa:MAP2597c hypothetical protein YP_001717224.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE1774 Ferredoxin 1 YP_001717225.1 PFAM: polysaccharide deacetylase; KEGG: chy:CHY_0274 polysaccharide deacetylase family protein YP_001717226.1 PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1 YP_001717227.1 KEGG: chy:CHY_1813 hypothetical protein YP_001717228.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mta:Moth_1492 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001717229.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_001717230.1 KEGG: rru:Rru_A2950 farnesyltranstransferase YP_001717231.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: putative RNA methylase; protein-L-isoaspartate(D-aspartate) O-methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: chy:CHY_1809 2-heptaprenyl-1,4-naphthoquinone methyltransferase YP_001717232.1 TIGRFAM: 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; KEGG: mta:Moth_0096 4-hydroxybenzoate polyprenyltransferase, putative YP_001717233.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1806 radical SAM domain protein YP_001717234.1 PFAM: protein of unknown function DUF178; KEGG: sth:STH819 hypothetical protein YP_001717235.1 PFAM: Radical SAM domain protein; KEGG: chy:CHY_1804 radical SAM domain protein YP_001717237.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_001717238.1 KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_001717239.1 KEGG: mta:Moth_0100 hypothetical protein YP_001717240.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase, SleB; KEGG: tte:TTE1018 LysM-repeat proteins and domains YP_001717241.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: det:DET0860 hydrogenase, EchA subunit, putative YP_001717242.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: det:DET0861 hydrogenase, EchB subunit, putative YP_001717243.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: deh:cbdb_A844 hydrogenase, group 4, EchC subunit YP_001717244.1 KEGG: det:DET0866 hydrogenase subunit, putative YP_001717245.1 PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: det:DET0867 hydrogenase, group 4, EchE subunit, putative YP_001717246.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0128 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_001717247.1 PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: mta:Moth_1467 formylmethanofuran dehydrogenase, subunit E region YP_001717248.1 KEGG: chy:CHY_2244 hypothetical protein YP_001717249.1 PFAM: glycosyl transferase, group 1; KEGG: mta:Moth_1133 glycosyl transferase, group 1 YP_001717250.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sth:STH1449 hypothetical protein YP_001717251.1 PFAM: Dak phosphatase; KEGG: swo:Swol_0759 hypothetical protein YP_001717252.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001717253.1 PFAM: GTP-binding protein, HSR1-related; KEGG: sth:STH2123 ATP/GTP-binding protein YP_001717254.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001717255.1 KEGG: mta:Moth_1135 hypothetical protein YP_001717256.1 KEGG: chy:CHY_1145 putative ComF operon protein YP_001717257.1 KEGG: chy:CHY_1348 hypothetical protein YP_001717258.1 PFAM: protein of unknown function UPF0182; KEGG: swo:Swol_1161 protein of unknown function UPF0182 YP_001717259.1 PFAM: phosphofructokinase; KEGG: chy:CHY_1349 phosphofructokinase YP_001717260.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dge:Dgeo_0605 twin-arginine translocation protein, TatA/E family YP_001717261.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mta:Moth_1278 twin-arginine translocation protein, TatA/E family YP_001717262.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: dge:Dgeo_0605 twin-arginine translocation protein, TatA/E family YP_001717263.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase protein TatC YP_001717264.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001717265.1 PFAM: heat shock protein Hsp20; CS; KEGG: aae:aq_1283 small heat shock protein (class I) YP_001717266.1 KEGG: afu:AF0701 A. fulgidus predicted coding region AF0701 YP_001717267.1 KEGG: bld:BLi01407 hypothetical protein YP_001717268.1 TIGRFAM: daunorubicin resistance ABC transporter, inner membrane subunit B; PFAM: ABC-2 type transporter; KEGG: mta:Moth_2298 daunorubicin resistance ABC transporter membrane protein YP_001717269.1 KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001717270.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein YP_001717271.1 PFAM: ABC transporter related; KEGG: gsu:GSU3392 branched-chain amino acid ABC transporter, ATP-binding protein YP_001717272.1 PFAM: inner-membrane translocator; KEGG: swo:Swol_2111 branched-chain amino acid ABC transporter, permease protein YP_001717273.1 PFAM: inner-membrane translocator; KEGG: swo:Swol_2112 branched-chain amino acid ABC transporter, permease protein YP_001717274.1 PFAM: Extracellular ligand-binding receptor; KEGG: gsu:GSU3401 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative YP_001717275.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: gsu:GSU3390 hypothetical protein YP_001717277.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mta:Moth_1125 protein of unknown function DUF6, transmembrane YP_001717278.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: mta:Moth_1126 extracellular solute-binding protein, family 3 YP_001717279.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mta:Moth_1127 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001717280.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1128 ABC transporter related YP_001717281.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; KEGG: mta:Moth_0506 nitrite and sulphite reductase 4Fe-4S region YP_001717282.1 PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY1359 hypothetical protein YP_001717284.1 KEGG: ttj:TTHA0157 probable NADH-dependent flavin oxidoreductase YP_001717285.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_001717286.1 PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase, insert region; KEGG: sat:SYN_00093 RNA 3'-terminal phosphate cyclase YP_001717287.1 KEGG: dsy:DSY2326 hypothetical protein YP_001717288.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1715 ATPase YP_001717289.1 PFAM: protein of unknown function DUF214; KEGG: swo:Swol_1714 hypothetical protein YP_001717290.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1581 secretion protein HlyD YP_001717291.1 PFAM: MCP methyltransferase, CheR-type; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1443 UbiE/COQ5 methyltransferase YP_001717292.1 PFAM: ABC-3 protein; KEGG: mta:Moth_1444 ABC-3 YP_001717293.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVU0103 cation ABC transporter, ATP-binding protein, putative YP_001717294.1 PFAM: periplasmic solute binding protein; KEGG: dvu:DVU0102 cation ABC transporter, periplasmic binding protein YP_001717295.1 PFAM: protein of unknown function DUF502; KEGG: mta:Moth_0597 protein of unknown function DUF502 YP_001717296.1 KEGG: det:DET0821 hypothetical protein YP_001717297.1 PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: ttj:TTHA1150 DNA polymerase beta family (X family) YP_001717298.1 PFAM: beta-lactamase domain protein; KEGG: gsu:GSU0397 metallo-beta-lactamase family protein YP_001717299.1 KEGG: gvi:glr2235 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001717300.1 KEGG: mta:Moth_0652 protein of unknown function DUF132 YP_001717301.1 PFAM: acylphosphatase; KEGG: pai:PAE1232 acylphosphatase, putative YP_001717302.1 PFAM: PP-loop domain protein; KEGG: tte:TTE0073 predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_001717303.1 PFAM: Appr-1-p processing domain protein; KEGG: gka:GK3265 hypothetical protein YP_001717304.1 KEGG: tte:TTE2532 predicted Zn-dependent hydrolase of the beta-lactamase fold YP_001717305.1 PFAM: amino acid permease-associated region; KEGG: mta:Moth_0737 amino acid permease-associated region YP_001717306.1 KEGG: mta:Moth_1937 carbohydrate binding family 25 YP_001717307.1 KEGG: gvi:glr0116 hypothetical protein YP_001717308.1 PFAM: Rhomboid family protein; KEGG: sus:Acid_4807 rhomboid family protein YP_001717309.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: pca:Pcar_2506 alcohol dehydrogenase YP_001717310.1 PFAM: nitroreductase; KEGG: afu:AF0226 NADH oxidase (NoxC) YP_001717311.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001717312.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: det:DET0378 phosphoribosylformylglycinamidine synthase I YP_001717313.1 KEGG: det:DET0379 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001717314.1 PFAM: protein of unknown function DUF205; KEGG: mta:Moth_1321 protein of unknown function DUF205 YP_001717315.1 KEGG: mta:Moth_1322 small GTP-binding protein domain; TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; SMART: AAA ATPase YP_001717316.1 PFAM: protein of unknown function DUF512; KEGG: mta:Moth_1323 protein of unknown function DUF512 YP_001717318.1 KEGG: chy:CHY_1922 hypothetical protein YP_001717319.1 PFAM: Stage II sporulation P family protein; KEGG: chy:CHY_1923 putative stage II sporulation protein P YP_001717320.1 PFAM: protein of unknown function DUF1614; KEGG: chy:CHY_1924 hypothetical protein YP_001717321.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001717322.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; PFAM: phospholipid/glycerol acyltransferase; KEGG: tte:TTE1351 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001717323.1 KEGG: mta:Moth_1331 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_001717324.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001717325.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mta:Moth_1333 prephenate dehydrogenase YP_001717326.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tte:TTE1013 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001717327.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: mta:Moth_0515 histidinol-phosphate aminotransferase YP_001717328.1 KEGG: sat:SYN_01941 tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase, alpha chain YP_001717329.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001717330.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dps:DP1623 related to N-(5'-phosphoribosyl)anthranilate isomerase YP_001717331.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: mta:Moth_1339 indole-3-glycerol-phosphate synthase YP_001717332.1 KEGG: mta:Moth_1340 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3 YP_001717333.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mta:Moth_1341 glutamine amidotransferase of anthranilate synthase or para-aminobenzoate synthase YP_001717334.1 KEGG: sth:STH1407 anthranilate synthetase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_001717335.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_2263 metal dependent phosphohydrolase YP_001717336.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_2263 metal dependent phosphohydrolase YP_001717337.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: swo:Swol_1395 chorismate mutase YP_001717338.1 KEGG: chy:CHY_1935 hypothetical protein YP_001717339.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mta:Moth_1352 pseudouridine synthase, Rsu YP_001717340.1 PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1355 nucleoside recognition YP_001717341.1 PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition YP_001717342.1 KEGG: chy:CHY_1943 hypothetical protein YP_001717343.1 KEGG: gka:GK2789 hypothetical protein YP_001717344.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: dsy:DSY2289 hypothetical protein YP_001717345.1 PFAM: peptidase M50; KEGG: dvu:DVU0141 peptidase, M50 family YP_001717346.1 PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase, DHHA1; KEGG: swo:Swol_1420 polyA polymerase family protein YP_001717347.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: chy:CHY_1951 diaminopimelate decarboxylase YP_001717348.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001717349.1 PFAM: ABC-2 type transporter; KEGG: cya:CYA_0319 ABC-2 transporter, permease protein YP_001717350.1 KEGG: cyb:CYB_2030 ABC transporter, ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001717351.1 KEGG: mba:Mbar_A1776 magnesium-chelatase subunit; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase YP_001717352.1 KEGG: mba:Mbar_A1776 magnesium-chelatase subunit; PFAM: magnesium chelatase, ChlI subunit; von Willebrand factor, type A; SMART: AAA ATPase YP_001717353.1 PFAM: CobN/magnesium chelatase; KEGG: mth:MTH456 magnesium chelatase subunit YP_001717354.1 PFAM: ABC-2 type transporter; KEGG: cya:CYA_0319 ABC-2 transporter, permease protein YP_001717355.1 PFAM: ABC-2 type transporter; KEGG: cyb:CYB_1697 ABC-2 transporter, permease protein YP_001717356.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyb:CYB_2030 ABC transporter, ATP-binding protein YP_001717357.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A2397 iron(III) ABC transporter, ATP-binding protein YP_001717358.1 PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_0133 hypothetical protein YP_001717359.1 PFAM: periplasmic binding protein; copper amine oxidase domain protein; KEGG: mhu:Mhun_0286 periplasmic binding protein YP_001717360.1 PFAM: transport system permease protein; KEGG: mhu:Mhun_0290 transport system permease protein YP_001717361.1 PFAM: periplasmic binding protein; KEGG: mac:MA3922 periplasmic binding protein YP_001717362.1 PFAM: CobN/magnesium chelatase; KEGG: mma:MM1998 cobalamin biosynthesis protein YP_001717363.1 PFAM: SpoVA protein; KEGG: mta:Moth_1374 SpoVA protein YP_001717364.1 PFAM: Stage V sporulation AD family protein; KEGG: mta:Moth_1375 stage V sporulation AD YP_001717365.1 PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC YP_001717366.1 PFAM: protein of unknown function DUF1458; KEGG: chy:CHY_1958 hypothetical protein YP_001717367.1 PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mta:Moth_1496 sigma 28 (flagella/sporulation) YP_001717368.1 TIGRFAM: anti-sigma F factor; PFAM: ATP-binding region, ATPase domain protein; KEGG: mta:Moth_1497 putative anti-sigma regulatory factor (serine/threonine protein kinase) YP_001717369.1 TIGRFAM: anti-anti-sigma factor; Anti-sigma factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: swo:Swol_0613 anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)-like protein YP_001717370.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: dsy:DSY2305 hypothetical protein YP_001717372.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; Miro domain protein; KEGG: chy:CHY_0961 translation elongation factor G YP_001717373.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: dsy:DSY1819 hypothetical protein YP_001717374.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001717375.1 KEGG: chy:CHY_0956 hypothetical protein YP_001717376.1 PFAM: GTP cyclohydrolase I; KEGG: chy:CHY_0955 GTP cyclohydrolase I YP_001717377.1 PFAM: Radical SAM domain protein; KEGG: gsu:GSU1721 radical SAM domain protein YP_001717378.1 PFAM: protein of unknown function DUF366; KEGG: chy:CHY_0953 hypothetical protein YP_001717379.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: chy:CHY_0952 ExsB protein YP_001717380.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: chy:CHY_0951 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_001717381.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mth:MTH72 O-linked GlcNAc transferase YP_001717382.1 KEGG: tte:TTE0975 Deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_001717383.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001717385.1 PFAM: metallophosphoesterase; KEGG: swo:Swol_2226 hypothetical protein YP_001717387.1 PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: gsu:GSU3377 helix-hairpin-helix domain protein YP_001717388.1 KEGG: cpf:CPF_2606 site-specific recombinase, resolvase family YP_001717389.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001717392.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: gme:Gmet_2911 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_001717393.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: gme:Gmet_2912 ferredoxin YP_001717394.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_0929 putative succinate dehydrogenase, subunit C YP_001717395.1 KEGG: swo:Swol_0394 4Fe-4S ferredoxin, iron-sulfur binding YP_001717396.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: mta:Moth_2282 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region YP_001717397.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: chy:CHY_1375 fumarate hydratase YP_001717398.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH0602 hypothetical protein YP_001717399.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bha:BH0601 hypothetical protein YP_001717400.1 contains unknown domain; PFAM: response regulator receiver; KEGG: dsy:DSY4758 hypothetical protein YP_001717401.1 PFAM: leucine rich repeat variant; KEGG: dra:DR0535 hypothetical protein YP_001717402.1 SMART: AAA ATPase; KEGG: pai:PAE0090 hypothetical protein YP_001717403.1 KEGG: pai:PAE0088 hypothetical protein YP_001717404.1 PFAM: YdjC family protein; KEGG: bce:BC5208 cellobiose phosphotransferase system celC YP_001717407.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; PhoU family protein; KEGG: mta:Moth_1817 Na/Pi cotransporter II-related YP_001717408.1 KEGG: mta:Moth_0157 hypothetical protein YP_001717409.1 PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pgi:PG1043 ferrous iron transport protein B YP_001717410.1 PFAM: FeoA family protein; KEGG: mbu:Mbur_0777 FeoA YP_001717411.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: tte:TTE2451 sporulation protein and related proteins YP_001717412.1 KEGG: dsy:DSY0322 hypothetical protein; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; SMART: Hedgehog/intein hint domain protein YP_001717413.1 KEGG: tte:TTE1762 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001717415.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH169 RNA polymerase ECF-type sigma factor YP_001717418.1 KEGG: swo:Swol_1505 hypothetical protein YP_001717419.1 TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; KEGG: sth:STH2173 ATP-dependent deoxyribonuclease subunit A YP_001717420.1 TIGRFAM: UvrD-like DNA helicase, C terminal; KEGG: mta:Moth_0481 ATP-dependent deoxyribonuclease subunit B YP_001717421.1 PFAM: SMC domain protein; metallophosphoesterase; KEGG: chy:CHY_0945 Ser/Thr protein phosphatase family protein YP_001717422.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001717423.1 TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain; KEGG: mta:Moth_2275 pyrimidine-nucleoside phosphorylase YP_001717424.1 KEGG: chy:CHY_1963 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase N-terminal domain protein YP_001717425.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: sth:STH1821 recombinase YP_001717427.1 KEGG: mta:Moth_1503 required for dissolution of the septal cell wall; RBL05740 YP_001717428.1 KEGG: swo:Swol_0596 hypothetical protein YP_001717429.1 TIGRFAM: CRISPR-associated protein, Csa1 family; KEGG: afu:AF1879 hypothetical protein YP_001717430.1 TIGRFAM: CRISPR-associated protein Cas4; KEGG: afu:AF1877 putative RecB family exonuclease YP_001717431.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: mma:MM0558 hypothetical protein YP_001717432.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: afu:AF1878 hypothetical protein YP_001717433.1 KEGG: mba:Mbar_A0309 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001717434.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mac:MA3666 hypothetical protein YP_001717435.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: mac:MA3667 hypothetical protein YP_001717436.1 KEGG: mba:Mbar_A0306 hypothetical protein YP_001717437.1 PFAM: regulatory protein, DeoR; KEGG: plt:Plut_0841 hypothetical protein YP_001717438.1 KEGG: sat:SYN_02254 hypothetical cytosolic protein YP_001717440.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: mta:Moth_0886 hypothetical protein YP_001717441.1 KEGG: det:DET0581 hypothetical protein YP_001717442.1 KEGG: mta:Moth_0883 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_001717443.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: mta:Moth_2127 dihydroorotate dehydrogenase family protein YP_001717444.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mta:Moth_2128 oxidoreductase FAD/NAD(P)-binding YP_001717445.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: mta:Moth_0882 carbamoyl-phosphate synthase, large subunit YP_001717446.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: mta:Moth_0881 carbamoyl-phosphate synthase, small subunit YP_001717447.1 KEGG: mta:Moth_0880 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3 YP_001717448.1 KEGG: mta:Moth_0879 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain YP_001717449.1 PFAM: phosphoribosyltransferase; KEGG: chy:CHY_1503 pyrimidine regulatory protein PyrR YP_001717450.1 KEGG: mta:Moth_0117 hypothetical protein YP_001717451.1 PFAM: major facilitator superfamily MFS_1; KEGG: bsu:BG13112 similar to multidrug resistance protein YP_001717452.1 PFAM: (2R)-phospho-3-sulfolactate synthase, ComA; KEGG: mta:Moth_0118 (2R)-phospho-3-sulfolactate synthase, ComA YP_001717453.1 PFAM: protein of unknown function DUF441; KEGG: mta:Moth_0120 protein of unknown function DUF441 YP_001717454.1 TIGRFAM: cysteine synthases; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pca:Pcar_3005 cysteine synthase B YP_001717455.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: deh:cbdb_A644 cobinamide kinase YP_001717456.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: deh:cbdb_A642 cobalamin 5'-phosphate synthase YP_001717457.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: det:DET0691 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001717458.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH1933 iron ABC transporter ATP-binding protein YP_001717459.1 PFAM: transport system permease protein; KEGG: deh:cbdb_A635 ABC-type cobalamin/Fe3+-siderophores transport system, permease component YP_001717460.1 PFAM: periplasmic binding protein; KEGG: deh:cbdb_A633 ABC-type cobalamin/Fe3+-siderophores transport system, periplasmic component YP_001717462.1 KEGG: swo:Swol_1133 hypothetical protein YP_001717463.1 PFAM: peptidase M24; KEGG: gsu:GSU1105 xaa-pro dipeptidase YP_001717464.1 KEGG: mta:Moth_1936 glycogen/starch synthases, ADP-glucose type; TIGRFAM: glycogen/starch synthases, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein YP_001717465.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; KEGG: tma:TM0896 galactose-1-phosphate uridylyltransferase YP_001717466.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: mta:Moth_1865 septum site-determining protein MinC YP_001717467.1 PFAM: NUDIX hydrolase; KEGG: mta:Moth_1504 NUDIX hydrolase YP_001717468.1 KEGG: gsu:GSU2629 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II YP_001717469.1 TIGRFAM: dethiobiotin synthase; KEGG: gsu:GSU1583 dethiobiotin synthase YP_001717470.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: sat:SYN_02563 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001717471.1 KEGG: mba:Mbar_A2293 hypothetical protein YP_001717472.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb2761 SAM-dependent methyltransferase YP_001717473.1 KEGG: chy:CHY_0889 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001717474.1 PFAM: heat shock protein Hsp20; CS; KEGG: mta:Moth_2505 heat shock protein HSP20 YP_001717476.1 KEGG: oih:OB1707 hypothetical protein YP_001717478.1 TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit YP_001717479.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_001717480.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: mta:Moth_1719 NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001717481.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: mta:Moth_1244 glutamate-1-semialdehyde-2,1-aminomutase YP_001717482.1 KEGG: mta:Moth_2197 putative transcriptional regulator, AsnC family YP_001717483.1 KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family YP_001717484.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_1211 radical SAM domain protein YP_001717485.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001717486.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY2223 hypothetical protein YP_001717487.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein YP_001717488.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001717489.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001717490.1 TIGRFAM: siroheme synthase; KEGG: sat:SYN_02276 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase YP_001717491.1 PFAM: Polyprenyl synthetase; KEGG: dsy:DSY2232 hypothetical protein YP_001717492.1 PFAM: zinc finger, DksA/TraR C4-type; KEGG: mta:Moth_0866 transcriptional regulators, TraR/DksA family YP_001717493.1 KEGG: tte:TTE1573 hypothetical protein YP_001717494.1 PFAM: protein of unknown function DUF711; KEGG: mta:Moth_1377 protein of unknown function DUF711 YP_001717495.1 ACT domain-containing protein YP_001717496.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001717497.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001717498.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: chy:CHY_1513 HDIG domain protein, ambiguity YP_001717499.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: chy:CHY_1514 preprotein translocase, YajC subunit YP_001717500.1 KEGG: dsy:DSY2463 hypothetical protein; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001717501.1 KEGG: mta:Moth_1699 hypothetical protein YP_001717502.1 PFAM: protein of unknown function DUF208; KEGG: swo:Swol_1430 conserved hypothetical cytosolic protein YP_001717503.1 KEGG: chy:CHY_1522 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; Holliday junction DNA helicase RuvB, C-terminal domain; Holliday junction DNA helicase RuvB, N-terminal domain; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001717504.1 KEGG: pfl:PFL_4764 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_001717505.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: dsy:DSY2468 hypothetical protein YP_001717506.1 KEGG: mta:Moth_1703 hypothetical protein YP_001717507.1 TIGRFAM: NAD+ synthetase; PFAM: NAD+ synthase; KEGG: chy:CHY_1526 NAD+ synthetase YP_001717508.1 KEGG: swo:Swol_0931 hypothetical protein YP_001717509.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001717510.1 KEGG: chy:CHY_1563 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_001717511.1 PFAM: SufBD protein; KEGG: deh:cbdb_A794 iron-regulated ABC transporter, subunit SufB-related YP_001717512.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: det:DET0815 FeS assembly ATPase SufC, putative YP_001717513.1 PFAM: protein of unknown function DUF89; KEGG: pab:PAB1965 hypothetical protein YP_001717514.1 KEGG: mta:Moth_1711 MutS2 family protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein YP_001717515.1 PFAM: peptidase U32; KEGG: mta:Moth_1712 peptidase U32 YP_001717516.1 KEGG: chy:CHY_1566 hypothetical protein YP_001717517.1 PFAM: protein of unknown function DUF710; KEGG: swo:Swol_1104 hypothetical protein YP_001717518.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001717519.1 KEGG: mta:Moth_1751 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein YP_001717520.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: tte:TTE1690 rRNA methylase YP_001717521.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; TrkA-N domain protein; TrkA-C domain protein; KEGG: mta:Moth_1754 TrkA YP_001717522.1 TIGRFAM: ribosomal protein L20; KEGG: chy:CHY_1576 ribosomal protein L20 YP_001717523.1 PFAM: ribosomal protein L35; KEGG: dsy:DSY0268 50S ribosomal protein L35 YP_001717524.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: dsy:DSY0267 hypothetical protein YP_001717525.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001717526.1 KEGG: mta:Moth_1760 hypothetical protein YP_001717527.1 KEGG: mta:Moth_1761 hypothetical protein YP_001717528.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sru:SRU_0166 hypothetical protein YP_001717529.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related YP_001717530.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH824 branched chain amino acid ABC transporter ATP-binding protein YP_001717531.1 PFAM: inner-membrane translocator; KEGG: sth:STH1616 branched-chain amino acid ABC transporter permease protein YP_001717532.1 PFAM: inner-membrane translocator; KEGG: sth:STH1615 branched-chain amino acid ABC transporter permease protein YP_001717533.1 PFAM: Extracellular ligand-binding receptor; KEGG: sth:STH821 branched chain amino acid ABC transporter substrate-binding protein YP_001717534.1 KEGG: swo:Swol_2085 exodeoxyribonuclease V; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase YP_001717536.1 KEGG: mja:MJ0455 hypothetical protein YP_001717537.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: mbu:Mbur_1485 peptidylprolyl isomerase YP_001717538.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: sth:STH1647 ATP-dependent RNA helicase YP_001717539.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: mta:Moth_1058 serine-type D-Ala-D-Ala carboxypeptidase YP_001717540.1 PFAM: polysaccharide deacetylase; KEGG: chy:CHY_1591 polysaccharide deacetylase family protein YP_001717541.1 TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: chy:CHY_1593 putative lipoprotein YP_001717542.1 KEGG: mta:Moth_0719 DedA YP_001717543.1 KEGG: mbo:Mb0630c hypothetical protein YP_001717544.1 KEGG: mta:Moth_1841 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_001717545.1 KEGG: mta:Moth_1840 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; zinc finger, Fpg domain protein YP_001717546.1 KEGG: bha:BH3151 hypothetical protein YP_001717547.1 KEGG: sth:STH851 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_001717548.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mta:Moth_1837 lytic transglycosylase, catalytic YP_001717549.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: chy:CHY_0534 isoleucyl-tRNA synthetase YP_001717550.1 PFAM: DivIVA family protein; KEGG: cpr:CPR_1819 cell division protein DivIVA, putative YP_001717551.1 PFAM: protein of unknown function YGGT; KEGG: chy:CHY_2040 hypothetical protein YP_001717552.1 KEGG: ade:Adeh_2480 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent YP_001717553.1 PFAM: protein of unknown function DUF552; KEGG: dsy:DSY2887 hypothetical protein YP_001717554.1 PFAM: alanine racemase domain protein; KEGG: gsu:GSU2544 conserved hypothetical protein TIGR00044 YP_001717555.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: chy:CHY_2045 phosphate transport system regulatory protein PhoU YP_001717556.1 KEGG: mta:Moth_0114 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001717557.1 KEGG: mta:Moth_2494 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001717558.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: chy:CHY_2047 DNA-binding response regulator YP_001717559.1 PFAM: protein of unknown function DUF152; KEGG: swo:Swol_0015 hypothetical protein YP_001717560.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mta:Moth_1187 RNA-metabolising metallo-beta-lactamase YP_001717561.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: deh:cbdb_A1440 hypothetical protein YP_001717562.1 PFAM: PRC-barrel domain protein; KEGG: mta:Moth_0855 PRC-barrel YP_001717563.1 KEGG: mta:Moth_0854 hypothetical protein YP_001717564.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001717565.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001717566.1 PFAM: peptidase U4, sporulation factor SpoIIGA; KEGG: mta:Moth_0851 peptidase U4, sporulation factor SpoIIGA YP_001717567.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001717568.1 PFAM: protein of unknown function DUF1290; KEGG: mta:Moth_0848 protein of unknown function DUF1290 YP_001717569.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein YP_001717570.1 PFAM: protein of unknown function DUF881; KEGG: sth:STH1216 hypothetical protein YP_001717571.1 PFAM: Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: mta:Moth_0847 cell division protein FtsQ YP_001717572.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dsy:DSY2905 hypothetical protein YP_001717573.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001717574.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001717575.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001717576.1 TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: gka:GK1119 stage V sporulation protein E YP_001717577.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001717578.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001717579.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: mta:Moth_0839 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001717580.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: mta:Moth_0838 UDP-N-acetylmuramyl-tripeptide synthetases YP_001717581.1 KEGG: chy:CHY_2075 penicillin-binding protein 2B; TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein YP_001717582.1 PFAM: Septum formation initiator; KEGG: mta:Moth_0836 cell division protein, FtsL -like YP_001717583.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mta:Moth_0835 methyltransferase YP_001717584.1 TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: chy:CHY_2079 hypothetical protein YP_001717585.1 KEGG: swo:Swol_1734 hypothetical protein YP_001717587.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_001717588.1 KEGG: mta:Moth_0833 hypothetical protein YP_001717589.1 involved in the peptidyltransferase reaction during translation YP_001717590.1 PFAM: ribosomal protein L21; KEGG: gka:GK2610 50S ribosomal protein L21 YP_001717591.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sth:STH426 ribonuclease G YP_001717592.1 KEGG: dsy:DSY3168 hypothetical protein YP_001717593.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY3169 hypothetical protein YP_001717594.1 PFAM: peptidase M50; KEGG: mta:Moth_0549 peptidase M50 YP_001717595.1 PFAM: peptidase M23B; KEGG: ctc:CTC02066 cell wall endopeptidase, family M23/M37 YP_001717596.1 PFAM: UbiE/COQ5 methyltransferase; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mta:Moth_1176 UbiE/COQ5 methyltransferase YP_001717597.1 PFAM: cell cycle protein; KEGG: chy:CHY_0358 peptidoglycan biosynthesis protein, FtsW/RodA/SpoVE family YP_001717598.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: swo:Swol_1635 septum site-determining protein YP_001717599.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3174 hypothetical protein YP_001717600.1 PFAM: Septum formation inhibitor MinC; KEGG: swo:Swol_1637 septum formation inhibitor-like protein YP_001717601.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: chy:CHY_0345 peptidoglycan biosynthesis transpeptidase YP_001717602.1 KEGG: swo:Swol_1639 hypothetical protein YP_001717603.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001717604.1 functions in MreBCD complex in some organisms YP_001717605.1 PFAM: helix-hairpin-helix motif; DNA repair protein RadC; KEGG: mta:Moth_0536 DNA repair protein RadC YP_001717606.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: mta:Moth_0535 maf protein YP_001717607.1 KEGG: swo:Swol_1644 hypothetical protein YP_001717608.1 PFAM: Endoribonuclease L-PSP; KEGG: sth:STH1785 hypothetical protein YP_001717609.1 PFAM: sodium/calcium exchanger membrane region; KEGG: mta:Moth_0818 sodium/calcium exchanger membrane region YP_001717610.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: mta:Moth_0533 FolC bifunctional protein YP_001717611.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001717612.1 KEGG: dsy:DSY3393 hypothetical protein YP_001717614.1 KEGG: chy:CHY_0330 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001717615.1 PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; peptidase S16, lon domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dsy:DSY3196 hypothetical protein YP_001717616.1 binds and unfolds substrates as part of the ClpXP protease YP_001717617.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001717618.1 TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: mta:Moth_0527 trigger factor YP_001717619.1 KEGG: fra:Francci3_2632 tRNA (adenine-N(1)-)-methyltransferase YP_001717620.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: dsy:DSY1997 hypothetical protein YP_001717623.1 PFAM: gas vesicle protein GVPa; KEGG: mba:Mbar_A0339 hypothetical protein YP_001717624.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: mba:Mbar_A0338 GvpL YP_001717625.1 PFAM: Gas vesicle K; KEGG: mba:Mbar_A0337 hypothetical protein YP_001717626.1 KEGG: plt:Plut_0695 hypothetical protein YP_001717627.1 PFAM: gas vesicle protein GVPa; KEGG: mba:Mbar_A0335 hypothetical protein YP_001717628.1 PFAM: Gas vesicle G; KEGG: sco:SCO6502 gas vesicle synthesis protein YP_001717629.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: aba:Acid345_2401 gas vesicle synthesis GvpLGvpF YP_001717630.1 KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase, central domain protein; cell division protein 48, CDC48, domain 2; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001717632.1 KEGG: plt:Plut_0695 hypothetical protein YP_001717633.1 KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_001717636.1 PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0689 gas vesicle synthesis protein GvpA YP_001717637.1 PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0689 gas vesicle synthesis protein GvpA YP_001717639.1 PFAM: Integrase, catalytic region; KEGG: dde:Dde_3592 putative transposase protein YP_001717640.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001717641.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001717642.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: mta:Moth_0520 Ham1-like protein YP_001717643.1 KEGG: sth:STH343 ribonuclease PH (tRNA nucleotidyltransferase); TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease YP_001717644.1 PFAM: beta-lactamase domain protein; KEGG: chy:CHY_0312 metallo-beta-lactamase family protein YP_001717645.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: gsu:GSU2925 hypothetical protein YP_001717646.1 KEGG: mta:Moth_0518 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase YP_001717647.1 KEGG: swo:Swol_0126 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein YP_001717648.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: swo:Swol_1888 ErfK/YbiS/YcfS/YnhG YP_001717649.1 KEGG: chy:CHY_0303 hypothetical protein YP_001717650.1 PFAM: protein of unknown function DUF55 YP_001717651.1 PFAM: copper amine oxidase domain protein; KEGG: sth:STH1268 hypothetical protein YP_001717653.1 KEGG: ttj:TTHB006 hypothetical protein YP_001717654.1 KEGG: ttj:TTHB007 hypothetical protein YP_001717657.1 TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: mta:Moth_1826 L-lactate dehydrogenase YP_001717662.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001717665.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: dge:Dgeo_1556 phage SPO1 DNA polymerase-related protein YP_001717666.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mta:Moth_1132 glutamyl-tRNA synthetase YP_001717667.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: det:DET1460 methylated-DNA--protein-cysteine methyltransferase YP_001717668.1 PFAM: Amylo-alpha-1,6-glucosidase; KEGG: mta:Moth_1366 amylo-alpha-1,6-glucosidase YP_001717669.1 PFAM: glycosyl transferase, group 1; KEGG: chy:CHY_0668 glycosyl transferase, group 1 family YP_001717670.1 KEGG: mta:Moth_1625 selenide, water dikinase; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein YP_001717671.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; KEGG: dsy:DSY3437 hypothetical protein YP_001717672.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: pca:Pcar_0748 hypothetical protein YP_001717673.1 KEGG: mta:Moth_1413 hypothetical protein YP_001717674.1 KEGG: mac:MA0158 hypothetical protein YP_001717675.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1631 tungsten transporter, ATP binding protein YP_001717676.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: swo:Swol_1632 sulfate/tungstate uptake family ABC transporter, permease protein YP_001717677.1 PFAM: extracellular solute-binding protein, family 1; KEGG: csa:Csal_2084 molybdate-binding protein YP_001717678.1 PFAM: peptidase S16, lon domain protein; KEGG: rxy:Rxyl_1929 ATP-dependent protease, putative YP_001717679.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_00872 calcium-transporting ATPase YP_001717680.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC1702 metal ion ABC transporter ATP-binding protein YP_001717681.1 PFAM: ABC-3 protein; KEGG: mta:Moth_0928 ABC-3 YP_001717682.1 TIGRFAM: hydrogenases, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: mta:Moth_1717 iron hydrogenase, small subunit YP_001717683.1 PFAM: iron dependent repressor; KEGG: tko:TK0107 manganese-dependent transcription regulator YP_001717684.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; Miro domain protein; KEGG: mta:Moth_1182 small GTP-binding protein domain YP_001717685.1 PFAM: FeoA family protein; KEGG: mta:Moth_1183 FeoA YP_001717686.1 PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein YP_001717688.1 KEGG: oih:OB1044 hypothetical protein YP_001717691.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: chy:CHY_2200 rrf2 family protein YP_001717693.1 PFAM: GTP-binding protein, HSR1-related; TGS domain protein; KEGG: ade:Adeh_2114 GTP-binding protein, HSR1-related YP_001717694.1 PFAM: CheW domain protein; KEGG: mta:Moth_0741 CheW protein YP_001717695.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: swo:Swol_0927 putative methyl-accepting chemotaxis sensory transducer YP_001717696.1 PFAM: HEAT domain containing protein; KEGG: mta:Moth_1597 PBS lyase heat-like repeat YP_001717697.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001717698.1 PFAM: major facilitator superfamily MFS_1; KEGG: gsu:GSU2491 major facilitator family transporter YP_001717700.1 PFAM: copper amine oxidase domain protein; KEGG: sth:STH2256 hypothetical protein YP_001717701.1 KEGG: chy:CHY_2036 putative DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001717702.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: chy:CHY_2035 CBS/cyclic nucleotide-binding domain protein YP_001717704.1 PFAM: Na+/solute symporter; KEGG: rha:RHA1_ro05043 sodium:solute symporter, SSF YP_001717705.1 KEGG: mmc:Mmcs_4052 hypothetical protein YP_001717706.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: chy:CHY_0659 acetyl-CoA synthetase YP_001717707.1 KEGG: chy:CHY_0120 phenylacetate-coenzyme A ligase YP_001717708.1 KEGG: mta:Moth_0513 phenylacetate--CoA ligase YP_001717709.1 PFAM: amino acid-binding ACT domain protein; KEGG: mta:Moth_0514 amino acid-binding ACT YP_001717710.1 PFAM: Desulfoferrodoxin Dfx domain protein; KEGG: deh:cbdb_A1720 putative desulforedoxin YP_001717711.1 KEGG: sth:STH3102 putative formate dehydrogenase formation protein YP_001717712.1 KEGG: dsy:DSY4710 putative hydrogenase cytochrome b subunit YP_001717713.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2600 formate dehydrogenase beta subunit YP_001717714.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH2601 formate dehydrogenase alpha subunit YP_001717715.1 PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH2602 putative formate dehydrogenase subunit YP_001717716.1 PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase YP_001717717.1 PFAM: transposase IS200-family protein; KEGG: tma:TM0777 transposase YP_001717718.1 KEGG: mac:MA2509 hypothetical protein YP_001717719.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001717720.1 PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: gka:GK1178 ribulose-phosphate 3-epimerase YP_001717721.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: mta:Moth_0913 GTPase EngC YP_001717722.1 PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: mta:Moth_0912 serine/threonine protein kinase YP_001717723.1 PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: mta:Moth_0909 protein serine/threonine phosphatases YP_001717724.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: chy:CHY_1480 radical SAM enzyme, Cfr family YP_001717725.1 TIGRFAM: sun protein; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: mta:Moth_0900 sun protein YP_001717726.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: gsu:GSU0130 methionyl-tRNA formyltransferase YP_001717727.1 KEGG: chy:CHY_1484 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_001717728.1 KEGG: sth:STH1342 primosomal replication factor Y; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001717729.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: sat:SYN_02177 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase YP_001717730.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: chy:CHY_1487 DNA-directed RNA polymerase, omega subunit YP_001717731.1 KEGG: cpe:CPE1748 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_001717732.1 PFAM: protein of unknown function DUF370; KEGG: cpr:CPR_1720 hypothetical protein YP_001717733.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: sth:STH1337 hypothetical protein YP_001717736.1 PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1490 aminotransferase, class I and II YP_001717737.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis YP_001717738.1 PFAM: diaminopimelate epimerase; KEGG: mta:Moth_0888 diaminopimelate epimerase YP_001717739.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: bha:BH1469 hypothetical protein YP_001717740.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 pyruvate ferredoxin/flavodoxin oxidoreductase family protein YP_001717741.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: swo:Swol_1399 putative keto/oxoacid ferredoxin oxidoreductase, beta subunit YP_001717742.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA YP_001717743.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: swo:Swol_1401 4Fe-4S ferredoxin, iron-sulfur binding YP_001717744.1 KEGG: tte:TTE2200 hypothetical protein YP_001717745.1 KEGG: chy:CHY_1974 hypothetical protein YP_001717746.1 PFAM: glycosyl transferase, family 2; KEGG: chy:CHY_1975 glycosyltransferase, group 2 family YP_001717747.1 KEGG: swo:Swol_0592 hypothetical protein YP_001717748.1 PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein YP_001717749.1 PFAM: response regulator receiver; KEGG: chy:CHY_1978 stage 0 sporulation protein A YP_001717750.1 PFAM: peptidase S55, SpoIVB; SMART: PDZ/DHR/GLGF domain protein; KEGG: mta:Moth_1506 peptidase S55, SpoIVB YP_001717751.1 KEGG: chy:CHY_1100 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like YP_001717752.1 KEGG: tte:TTE0750 hypothetical protein YP_001717753.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: mta:Moth_2014 ATP-dependent DNA helicase PcrA YP_001717754.1 TIGRFAM: redox-active disulfide protein 2; KEGG: sat:SYN_00338 glutaredoxin-like protein YP_001717755.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: swo:Swol_1764 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_001717756.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001717757.1 KEGG: mta:Moth_2032 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis YP_001717758.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001717759.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: tte:TTE2136 imidazoleglycerol-phosphate dehydratase YP_001717760.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: neu:NE0647 histidinol-phosphate aminotransferase YP_001717761.1 PFAM: histidinol dehydrogenase; KEGG: mta:Moth_2035 histidinol dehydrogenase YP_001717762.1 KEGG: mta:Moth_2043 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201 YP_001717763.1 involved in de novo purine biosynthesis YP_001717764.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pca:Pcar_1292 phosphoribosylglycinamide formyltransferase YP_001717765.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001717766.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: chy:CHY_1075 amidophosphoribosyltransferase YP_001717767.1 KEGG: mta:Moth_2051 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase YP_001717768.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mta:Moth_2052 adenylosuccinate lyase YP_001717769.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001717770.1 KEGG: chy:CHY_1067 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001717771.1 KEGG: mta:Moth_2110 hypothetical protein YP_001717772.1 PFAM: Uncharacterised conserved protein UCP033563; KEGG: swo:Swol_0652 conserved putative phosphatase YP_001717773.1 KEGG: mac:MA1849 hypothetical protein YP_001717774.1 KEGG: tde:TDE2130 hypothetical protein YP_001717775.1 PFAM: UspA domain protein; KEGG: mac:MA3944 universal stress protein YP_001717776.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: mta:Moth_2176 hydrogenase expression/formation protein HypE YP_001717777.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: mta:Moth_2177 hydrogenase expression/formation protein HypD YP_001717778.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: mta:Moth_2178 hydrogenase assembly chaperone HypC/HupF YP_001717779.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: mta:Moth_2179 (NiFe) hydrogenase maturation protein HypF YP_001717781.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: mta:Moth_2180 hydrogenase accessory protein HypB YP_001717782.1 PFAM: hydrogenase expression/synthesis, HypA; KEGG: mta:Moth_2181 hydrogenase nickel insertion protein HypA YP_001717783.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: stm:STM3146 putative processing element for hydrogenase-2 YP_001717784.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: ade:Adeh_4162 nickel-dependent hydrogenase, large subunit YP_001717785.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: ade:Adeh_4163 methyl-viologen-reducing hydrogenase, delta subunit YP_001717786.1 PFAM: methyl-viologen-reducing hydrogenase, delta subunit; KEGG: mth:MTH1138 methyl viologen-reducing hydrogenase, delta subunit homolog FlpD YP_001717787.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: mta:Moth_0216 integral membrane protein MviN YP_001717788.1 PFAM: glycosyl transferase, family 20; KEGG: mta:Moth_1367 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001717789.1 KEGG: mta:Moth_1368 trehalose-phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase YP_001717790.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mta:Moth_0673 UDP-glucose 4-epimerase YP_001717792.1 PFAM: histidine triad (HIT) protein; KEGG: swo:Swol_1000 hypothetical protein YP_001717793.1 KEGG: noc:Noc_0436 hypothetical protein YP_001717794.1 KEGG: lpn:lpg1661 hypothetical protein YP_001717795.1 KEGG: gka:GK3326 capsular polysaccharide biosynthesis protein YP_001717796.1 PFAM: lipopolysaccharide biosynthesis; KEGG: swo:Swol_1712 capsular polysaccharide biosynthesis protein-like protein YP_001717797.1 PFAM: O-antigen polymerase; KEGG: swo:Swol_0127 hypothetical protein YP_001717799.1 PFAM: protein of unknown function DUF1659; KEGG: mta:Moth_1793 hypothetical protein YP_001717800.1 KEGG: chy:CHY_0145 hypothetical protein YP_001717802.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: bca:BCE_3666 N-acetylmuramoyl-L-alanine amidase, putative YP_001717803.1 TIGRFAM: prevent-host-death family protein; KEGG: gvi:gsl0633 hypothetical protein YP_001717804.1 KEGG: rpb:RPB_4529 protein of unknown function DUF559 YP_001717805.1 KEGG: fal:FRAAL2455 hypothetical protein YP_001717806.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: tfu:Tfu_1124 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal YP_001717808.1 KEGG: pst:PSPTO_0047 UvrD/REP helicase family protein YP_001717809.1 KEGG: afu:AF0301 hypothetical protein YP_001717810.1 PFAM: DNA polymerase, beta domain protein region; KEGG: chy:CHY_1896 nucleotidyltransferase domain protein YP_001717811.1 PFAM: protein of unknown function DUF86; KEGG: tko:TK1710 hypothetical protein YP_001717814.1 PFAM: protein of unknown function DUF433; KEGG: ava:Ava_4167 protein of unknown function DUF433 YP_001717816.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: sth:STH1102 virulence factor YP_001717817.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mth:MTH1789 dTDP-glucose 4,6-dehydratase YP_001717818.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: rxy:Rxyl_3106 dTDP-4-dehydrorhamnose reductase YP_001717819.1 TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: chy:CHY_0976 glucose-1-phosphate thymidylyltransferase YP_001717820.1 KEGG: pab:PAB0787 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_001717821.1 PFAM: glycosyl transferase, group 1; KEGG: dge:Dgeo_0349 glycosyl transferase, group 1 YP_001717822.1 PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: ftf:FTF1781c hypothetical protein YP_001717823.1 PFAM: glycosyl transferase, group 1; KEGG: rxy:Rxyl_0566 glycosyl transferase, group 1 YP_001717824.1 KEGG: tcx:Tcr_1683 hypothetical protein YP_001717825.1 PFAM: glycosyl transferase, family 2; KEGG: rxy:Rxyl_0564 glycosyl transferase, family 2 YP_001717826.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: btk:BT9727_1112 possible O-antigen biosynthesis protein; possible glycosyltransferase; possible methyltransferase YP_001717827.1 KEGG: pab:PAB0795 rhamnosyl transferase related protein YP_001717828.1 PFAM: glycosyl transferase, family 2; KEGG: pat:Patl_3070 glycosyl transferase, family 2 YP_001717829.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gme:Gmet_1325 DegT/DnrJ/EryC1/StrS aminotransferase YP_001717830.1 PFAM: WxcM domain protein, C-terminal domain protein; KEGG: tel:tlr1343 hypothetical protein YP_001717831.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: tma:TM0759 acyltransferase, putative YP_001717832.1 PFAM: sulfatase; KEGG: hma:pNG7204 putative sulfatase YP_001717833.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: dvu:DVU1566 phosphoadenosine phosphosulfate reductase, putative YP_001717834.1 PFAM: sugar transferase; KEGG: spt:SPA0789 undecaprenyl-phosphate galactosephosphotransferase YP_001717836.1 PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: aeh:Mlg_0093 NusG antitermination factor YP_001717838.1 KEGG: mta:Moth_0181 hypothetical protein YP_001717839.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: tko:TK0888 transcription regulator, SpoVT/AbrB family YP_001717840.1 PFAM: PilT protein domain protein; KEGG: ava:Ava_4992 hypothetical protein YP_001717841.1 PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; KEGG: cpr:CPR_0941 resolvase, N terminal domain family YP_001717842.1 KEGG: dra:DR1530 hypothetical protein YP_001717844.1 PFAM: S-layer domain protein; KEGG: mta:Moth_0188 hypothetical protein YP_001717845.1 PFAM: Lytic transglycosylase, catalytic; KEGG: ttj:TTHA1471 putative transglycosylase YP_001717848.1 PFAM: protein of unknown function DUF368; KEGG: fnu:FN0490 integral membrane protein YP_001717849.1 PFAM: PHP C-terminal domain protein; KEGG: btk:BT9727_4957 phosphotyrosine-protein phosphatase (capsular polysaccharide biosynthesis) YP_001717850.1 PFAM: nitroreductase; KEGG: bja:blr4652 hypothetical protein YP_001717852.1 PFAM: Radical SAM domain protein; KEGG: pai:PAE2451 pyruvate formate-lyase activating enzyme homolog YP_001717853.1 PFAM: response regulator receiver; KEGG: tte:TTE1101 CheY-like receiver domains YP_001717854.1 KEGG: mta:Moth_0232 hypothetical protein YP_001717855.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_0895 radical SAM domain protein YP_001717856.1 PFAM: Patatin; KEGG: chy:CHY_0894 phospholipase family protein YP_001717857.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mta:Moth_1330 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_001717858.1 KEGG: tth:TTC0629 HD-hydrolase domain; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region YP_001717859.1 PFAM: transposase, IS605 OrfB; KEGG: sru:SRU_2395 IS605 family transposase YP_001717860.1 PFAM: transposase IS200-family protein; KEGG: tma:TM0777 transposase YP_001717861.1 PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: chy:CHY_0219 putative O-antigen polymerase YP_001717862.1 PFAM: ABC-1 domain protein; KEGG: mta:Moth_0233 ABC-1 YP_001717863.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001717864.1 PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: mta:Moth_0805 CheC, inhibitor of MCP methylation YP_001717865.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: chy:CHY_1019 flagellar motor switch protein FliM YP_001717866.1 PFAM: response regulator receiver; KEGG: chy:CHY_1018 chemotaxis response regulator YP_001717867.1 PFAM: CheC domain protein; KEGG: mta:Moth_0802 CheC, inhibitor of MCP methylation YP_001717868.1 PFAM: MCP methyltransferase, CheR-type; KEGG: mta:Moth_0801 MCP methyltransferase, CheR-type YP_001717869.1 PFAM: CheD family protein; KEGG: mta:Moth_0800 CheD, stimulates methylation of MCP proteins YP_001717870.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0797 flagellar basal-body rod protein FlgG YP_001717872.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mta:Moth_0794 sigma 28 (flagella/sporulation) YP_001717873.1 PFAM: type IV pilus assembly PilZ; KEGG: mta:Moth_0793 glycosyltransferase-like YP_001717874.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1011 putative flagellar biosynthesis protein YP_001717875.1 positive regulator of class III flagellar genes YP_001717876.1 membrane protein involved in the flagellar export apparatus YP_001717877.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: bcl:ABC2251 flagellar biosynthetic protein FlhB YP_001717878.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: mta:Moth_0788 flagellar biosynthetic protein FliR YP_001717879.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: pca:Pcar_1165 probable flagellar biosynthetic protein (FliQ) YP_001717880.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001717881.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: chy:CHY_1005 flagellar biosynthetic protein FliP YP_001717882.1 KEGG: mta:Moth_0785 hypothetical protein YP_001717883.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: mta:Moth_0784 flagellar motor switch FliN YP_001717884.1 PFAM: flagellar basal body-associated protein FliL; KEGG: aae:aq_1860 flagellar biosynthesis FliL YP_001717885.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: chy:CHY_1001 flagellar basal-body rod protein FlgG YP_001717886.1 TIGRFAM: flagellar operon protein; KEGG: gme:Gmet_3104 hypothetical protein YP_001717887.1 PFAM: flagellar hook capping protein; KEGG: chy:CHY_0999 flagellar hook assembly protein YP_001717888.1 PFAM: flagellar hook-length control protein; KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20 YP_001717889.1 TIGRFAM: flagellar export protein FliJ; KEGG: tma:TM0512 putative flagellar FliJ protein YP_001717890.1 KEGG: mta:Moth_0774 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase YP_001717891.1 KEGG: mta:Moth_0773 flagellar assembly protein FliH YP_001717892.1 PFAM: flagellar motor switch protein FliG; KEGG: mta:Moth_0772 flagellar motor switch protein FliG YP_001717893.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001717894.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: chy:CHY_0992 flagellar hook-basal body complex protein FliE YP_001717895.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tma:TM1365 flagellar basal-body rod protein FlgC YP_001717896.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: mta:Moth_0768 flagellar basal-body rod protein FlgB YP_001717897.1 PFAM: protein of unknown function DUF86; KEGG: mta:Moth_0179 protein of unknown function DUF86 YP_001717898.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mhu:Mhun_3093 DegT/DnrJ/EryC1/StrS aminotransferase YP_001717899.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: ctc:CTC01710 spore coat polysaccharide biosynthesis protein SpsF YP_001717900.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: cac:CAC2187 sialic acid synthase YP_001717901.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mta:Moth_0754 haloacid dehalogenase-like hydrolase YP_001717902.1 PFAM: protein of unknown function DUF201; KEGG: mta:Moth_0753 protein of unknown function DUF201 YP_001717903.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: son:SO3267 hypothetical protein YP_001717904.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: pcu:pc1568 hypothetical protein YP_001717905.1 KEGG: aeh:Mlg_2325 putative polysaccharide biosynthesis protein YP_001717906.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase YP_001717908.1 PFAM: protein of unknown function DUF115; KEGG: mta:Moth_0762 protein of unknown function DUF115 YP_001717909.1 PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like YP_001717910.1 PFAM: flagellar protein FlaG protein; KEGG: tte:TTE0504 uncharacterized flagellar protein FlaG YP_001717911.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; KEGG: bcl:ABC3074 flagellar hook-associated protein FliD YP_001717912.1 PFAM: flagellar protein FliS; KEGG: bsu:BG10922 flagellar protein YP_001717915.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: mta:Moth_0747 flagellin-like YP_001717916.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0746 flagellar hook-associated protein YP_001717917.1 PFAM: FlgN family protein YP_001717918.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: chy:CHY_0969 negative regulator of flagellin synthesis FlgM YP_001717919.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: sth:STH1541 chemotaxis protein-glutamate methylesterase YP_001717920.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: chy:CHY_0967 chemotaxis protein CheA YP_001717921.1 PFAM: CheW domain protein; KEGG: mta:Moth_0741 CheW protein YP_001717922.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: chy:CHY_0963 chemotaxis MotA protein YP_001717923.1 PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB YP_001717924.1 KEGG: mth:MTH1076 hypothetical protein YP_001717926.1 KEGG: cya:CYA_0874 putative CRISPR-associated RAMP protein YP_001717928.1 PFAM: protein of unknown function DUF324; KEGG: cya:CYA_0876 CRISPR-associated RAMP protein YP_001717929.1 TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family; PFAM: protein of unknown function DUF324; KEGG: cya:CYA_0877 CRISPR-associated RAMP protein, SSO1426 family YP_001717931.1 KEGG: cyb:CYB_0593 CRISPR-associated RAMP protein, Csx10 family YP_001717932.1 PFAM: protein of unknown function DUF324; KEGG: cyb:CYB_0594 CRISPR-associated RAMP protein, SSO1426 family YP_001717933.1 KEGG: cya:CYA_0882 CRISPR-associated protein, Crm2 family YP_001717934.1 KEGG: vch:VC1899 hypothetical protein YP_001717935.1 PFAM: transposase, IS4 family protein; KEGG: rha:RHA1_ro08495 probable transposase YP_001717936.1 PFAM: transposase, IS4 family protein; KEGG: rha:RHA1_ro08495 probable transposase YP_001717937.1 PFAM: transposase, IS4 family protein; KEGG: rha:RHA1_ro08495 probable transposase YP_001717938.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: tte:TTE2657 hypothetical protein YP_001717939.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: tte:TTE2658 hypothetical protein YP_001717940.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: tte:TTE2659 RecB family exonuclease YP_001717941.1 KEGG: tte:TTE2660 predicted helicases; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; metal-dependent phosphohydrolase, HD sub domain; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like YP_001717942.1 TIGRFAM: CRISPR-associated protein Cas5; KEGG: tte:TTE2661 hypothetical protein YP_001717943.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: tte:TTE2662 hypothetical protein YP_001717944.1 KEGG: tte:TTE2663 hypothetical protein YP_001717945.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: tte:TTE2664 hypothetical protein YP_001717946.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: ttj:TTHB165 hypothetical protein YP_001717947.1 TIGRFAM: CRISPR-associated protein, Cmr5 family; KEGG: ttj:TTHB164 hypothetical protein YP_001717948.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: tth:TT_P0118 hypothetical protein YP_001717949.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: tth:TT_P0117 hypothetical protein YP_001717950.1 KEGG: ttj:TTHB161 hypothetical protein YP_001717951.1 TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: ttj:TTHB160 hypothetical protein YP_001717952.1 PFAM: AAA-4 family protein; KEGG: tte:TTE2665 hypothetical protein YP_001717953.1 KEGG: tte:TTE2665 hypothetical protein YP_001717954.1 PFAM: regulatory protein, LuxR; KEGG: tte:TTE2666 hypothetical protein YP_001717955.1 TIGRFAM: DNA binding domain, excisionase family YP_001717956.1 PFAM: PemK family protein; KEGG: chy:CHY_0716 regulatory protein, PemK family YP_001717958.1 KEGG: dsy:DSY2851 hypothetical protein YP_001717961.1 KEGG: tbd:Tbd_1596 flagellar protein FhlB YP_001717962.1 PFAM: ribonuclease H; KEGG: mta:Moth_0619 ribonuclease H YP_001717964.1 PFAM: protein of unknown function DUF100; KEGG: chy:CHY_1039 hypothetical protein YP_001717965.1 PFAM: Inorganic pyrophosphatase; KEGG: sth:STH338 inorganic pyrophosphatase YP_001717968.1 PFAM: CBS domain containing protein; KEGG: pca:Pcar_1342 CBS domain containing membrane protein YP_001717969.1 KEGG: swo:Swol_2130 response regulator receiver protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_001717971.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: sus:Acid_4616 response regulator receiver modulated diguanylate cyclase YP_001717972.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cte:CT0940 cobalamin biosynthesis protein CbiB YP_001717973.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mta:Moth_1098 cobyric acid synthase CobQ YP_001717974.1 PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1104 L-threonine-O-3-phosphate decarboxylase, putative YP_001717975.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rxy:Rxyl_0638 cobyrinic acid a,c-diamide synthase YP_001717976.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region YP_001717977.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: pca:Pcar_0472 cobalamin biosynthesis protein CbiG YP_001717978.1 KEGG: mta:Moth_1092 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_001717979.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1091 precorrin-2 C20-methyltransferase YP_001717980.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pca:Pcar_0474 precorrin-6Y C5,15-methyltransferase YP_001717981.1 TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: mta:Moth_1088 cobalamin biosynthesis protein CbiD YP_001717982.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mta:Moth_1096 cobalamin (vitamin B12) biosynthesis CbiX protein YP_001717983.1 KEGG: mta:Moth_1219 cobalt transport protein ATP-binding subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; Precorrin-8X methylmutase CbiC/CobH; SMART: AAA ATPase YP_001717984.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mta:Moth_1220 cobalt ABC transporter CbiQ, permease subunit YP_001717985.1 TIGRFAM: cobalt transport protein; PFAM: Cobalt transport protein CbiN; KEGG: mmp:MMP1482 cobalt transport protein YP_001717986.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dar:Daro_1697 cobalamin (vitamin B12) biosynthesis CbiM protein YP_001717987.1 PFAM: Integrase, catalytic region; KEGG: dde:Dde_3592 putative transposase protein YP_001717988.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_01009 calcium-transporting ATPase YP_001717990.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001717991.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: stl:stu1617 hypothetical protein YP_001717992.1 PFAM: RNP-1 like RNA-binding protein; KEGG: mta:Moth_0565 RNA-binding region RNP-1 YP_001717993.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001717994.1 PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154 YP_001717995.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001717996.1 PFAM: histidine triad (HIT) protein; KEGG: sai:Saci_0714 HIT family protein YP_001717997.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001717998.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: chy:CHY_0370 spo0B-associated GTP-binding protein YP_001717999.1 KEGG: mta:Moth_0560 signal transduction histidine kinase regulating citrate/malate metabolism YP_001718001.1 PFAM: Na+/Pi-cotransporter; KEGG: fnu:FN0276 sodium-dependent phosphate transporter YP_001718002.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: chy:CHY_2101 D-alanyl-D-alanine carboxypeptidase YP_001718004.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rxy:Rxyl_0133 ATPase, P type cation/copper-transporter YP_001718005.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mta:Moth_0736 peptidase S1 and S6, chymotrypsin/Hap YP_001718006.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mta:Moth_0810 protein of unknown function DUF224, cysteine-rich region YP_001718007.1 KEGG: tbd:Tbd_1646 heterodisulfide reductase subunit C YP_001718008.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase, delta subunit; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT0867 heterodisulfide reductase, subunit A/hydrogenase, delta subunit, putative YP_001718009.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cch:Cag_1584 heterodisulfide reductase, subunit A YP_001718010.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_001718011.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cte:CT0864 adenylylsulfate reductase, subunit B YP_001718013.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dde:Dde_1109 adenylylsulfate reductase, beta subunit YP_001718014.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: afu:AF1670 adenylylsulfate reductase, subunit A YP_001718015.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: swo:Swol_1865 prolipoprotein diacylglyceryl transferase YP_001718016.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: mta:Moth_2132 molybdopterin binding domain YP_001718017.1 PFAM: MOSC domain containing protein; KEGG: mta:Moth_2133 MOSC YP_001718018.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mta:Moth_2134 molybdenum cofactor biosynthesis protein C YP_001718019.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: sth:STH2905 molybdenum cofactor biosynthesis protein YP_001718020.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: mta:Moth_2137 MoeA YP_001718021.1 KEGG: sat:SYN_02216 hypothetical protein YP_001718022.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mta:Moth_0827 two component transcriptional regulator, winged helix family YP_001718023.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: mta:Moth_0828 multi-sensor signal transduction histidine kinase YP_001718024.1 PFAM: permease; KEGG: pca:Pcar_0184 hypothetical protein YP_001718025.1 PFAM: regulatory protein, ArsR; KEGG: mta:Moth_2195 transcriptional regulator, ArsR family YP_001718026.1 KEGG: lbl:LBL_2483 hypothetical protein YP_001718027.1 PFAM: peptidase M15D, vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins; KEGG: gvi:gll1924 probable peptidase YP_001718029.1 PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: ade:Adeh_1779 prephenate dehydratase YP_001718030.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tte:TTE1013 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001718033.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: sru:SRU_1122 FixL-related histidine kinase YP_001718034.1 PFAM: inner-membrane translocator; KEGG: mta:Moth_1950 inner-membrane translocator YP_001718035.1 KEGG: tte:TTE1962 hypothetical protein YP_001718036.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; KEGG: mja:MJ0014 hypothetical protein YP_001718037.1 TIGRFAM: LexA repressor; PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; KEGG: nfa:nfa38000 putative repressor of the SOS regulon YP_001718039.1 PFAM: protein of unknown function UPF0153; KEGG: afu:AF1895 hypothetical protein YP_001718041.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0796 uncharacterized Fe-S protein YP_001718043.1 KEGG: mta:Moth_1940 hypothetical protein YP_001718044.1 KEGG: dsy:DSY0381 hypothetical protein YP_001718045.1 PFAM: protein of unknown function DUF195; KEGG: sus:Acid_7416 protein of unknown function DUF195 YP_001718047.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001718048.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tma:TM0010 NADH dehydrogenase I chain F YP_001718049.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: tma:TM0012 NADH dehydrogenase I chain E YP_001718050.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001718051.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; KEGG: mta:Moth_2283 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_001718052.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: aae:aq_1679 fumarate hydratase beta subunit YP_001718053.1 KEGG: dde:Dde_1258 fumarate reductase, cytochrome b subunit YP_001718054.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_001718055.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_001718056.1 PFAM: protein of unknown function DUF147; KEGG: dsy:DSY4489 hypothetical protein YP_001718057.1 PFAM: UspA domain protein; KEGG: hwa:HQ2796A probable stress response protein YP_001718059.1 PFAM: spore germination B3 GerAC family protein; KEGG: sth:STH2454 spore germination protein GerKC YP_001718060.1 PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: sth:STH2452 spore germination protein KA YP_001718061.1 PFAM: Spore germination protein; KEGG: sth:STH2453 spore germination protein YP_001718063.1 KEGG: dsy:DSY0796 Hup-type Ni,Fe-hydrogenase small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_001718064.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: chy:CHY_1545 [Ni/Fe] hydrogenase, large subunit YP_001718065.1 KEGG: chy:CHY_1544 [Ni/Fe] hydrogenase, b-type cytochrome subunit YP_001718066.1 PFAM: protein of unknown function UPF0153; KEGG: mta:Moth_1276 protein of unknown function UPF0153 YP_001718067.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: tte:TTE0148 Deoxycytidylate deaminase YP_001718068.1 PFAM: nitroreductase; KEGG: sat:SYN_01293 oxygen-insensitive NAD(P)H nitroreductase / dihydropteridine reductase YP_001718069.1 PFAM: UspA domain protein; KEGG: dvu:DVU0893 universal stress protein family YP_001718070.1 PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: sru:SRU_1138 phosphoenolpyruvate synthase YP_001718071.1 KEGG: mta:Moth_1833 hypothetical protein YP_001718072.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mta:Moth_1432 metal dependent phosphohydrolase YP_001718073.1 KEGG: cac:CAC1602 predicted diverged CheY-domain YP_001718074.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: tte:TTE1858 Ferrous ion uptake system protein FeoB (predicted GTPase) YP_001718075.1 PFAM: FeoA family protein; KEGG: mta:Moth_1434 FeoA YP_001718076.1 PFAM: FeoA family protein; KEGG: det:DET0097 iron dependent repressor, putative YP_001718077.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein YP_001718078.1 KEGG: gka:GK0888 transposase YP_001718079.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mth:MTH1727 phosphate transport system substrate-binding protein YP_001718080.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: chy:CHY_0530 putative phosphoesterase YP_001718081.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mth:MTH1730 phosphate transport system permease protein YP_001718082.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mth:MTH1729 phosphate transport system permease protein YP_001718084.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aae:aq_1168 pyruvate ferredoxin oxidoreductase, beta subunit YP_001718085.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: aae:aq_1167 pyruvate ferredoxin oxidoreductase, alpha subunit YP_001718086.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: afu:AF1700 pyruvate ferredoxin oxidoreductase, delta subunit YP_001718087.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aae:aq_1169 pyruvate ferredoxin oxidoreductase, gamma subunit YP_001718088.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aae:aq_1168 pyruvate ferredoxin oxidoreductase, beta subunit YP_001718089.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: aae:aq_1167 pyruvate ferredoxin oxidoreductase, alpha subunit YP_001718090.1 PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; KEGG: aae:aq_1166 hypothetical protein YP_001718091.1 KEGG: nwi:Nwi_2931 nitrogen regulatory protein P-II YP_001718092.1 PFAM: protein of unknown function DUF897; KEGG: jan:Jann_0109 protein of unknown function DUF897 YP_001718093.1 KEGG: cjr:CJE1298 hypothetical protein YP_001718094.1 KEGG: gvi:glr2085 hypothetical protein YP_001718095.1 KEGG: tbd:Tbd_2662 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp YP_001718096.1 KEGG: ttj:TTHA0514 phosphoribosylaminoimidazole carboxylase, catalytic subunit (PurE); TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001718098.1 PFAM: protein of unknown function DUF81; KEGG: dvu:DVU0149 hypothetical protein YP_001718100.1 KEGG: mac:MA2188 transposase YP_001718101.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mta:Moth_1815 agmatinase, putative YP_001718102.1 TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: mta:Moth_1816 spermidine synthase YP_001718103.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_001718104.1 PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease, family 2; KEGG: tte:TTE1276 Endonuclease IV YP_001718105.1 PFAM: extracellular solute-binding protein, family 5; KEGG: dsy:DSY0502 hypothetical protein YP_001718107.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ecs:ECs1147 hypothetical protein YP_001718108.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mbo:Mb3756 possible transferase YP_001718109.1 PFAM: Radical SAM domain protein; KEGG: mbo:Mb3756 possible transferase YP_001718110.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein domain protein; KEGG: mta:Moth_1625 selenide, water dikinase YP_001718111.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: nmu:Nmul_A0687 transcriptional regulator, LysR family YP_001718114.1 PFAM: Radical SAM domain protein; KEGG: mta:Moth_1167 radical SAM YP_001718115.1 KEGG: dsy:DSY2851 hypothetical protein YP_001718116.1 KEGG: mta:Moth_0522 hypothetical protein YP_001718117.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: mta:Moth_1448 ribonucleoside-triphosphate reductase, anaerobic-like YP_001718118.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001718119.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001718120.1 PFAM: protein of unknown function DUF541; KEGG: syn:slr1258 hypothetical protein YP_001718121.1 PFAM: Peptidoglycan-binding LysM; KEGG: mta:Moth_1271 peptidoglycan-binding LysM YP_001718122.1 KEGG: syn:sll1925 hypothetical protein YP_001718123.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mta:Moth_1683 cation diffusion facilitator family transporter YP_001718124.1 KEGG: aeh:Mlg_2003 Na+/solute symporter YP_001718125.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; KEGG: chy:CHY_2035 CBS/cyclic nucleotide-binding domain protein YP_001718126.1 KEGG: aeh:Mlg_2053 putative PAS/PAC sensor protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_001718127.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sth:STH958 putative hemolysin YP_001718130.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001718131.1 PFAM: chaperonin Cpn10; KEGG: chy:CHY_0806 chaperonin, 10 kDa YP_001718132.1 KEGG: chy:CHY_0797 hypothetical protein YP_001718133.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: dsy:DSY4290 hypothetical protein YP_001718134.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase YP_001718135.1 KEGG: mta:Moth_2157 metalloendopeptidase, putative, glycoprotease family; TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease YP_001718136.1 KEGG: dsy:DSY0348 hypothetical protein YP_001718137.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mta:Moth_2158 ribosomal-protein-alanine acetyltransferase YP_001718138.1 PFAM: peptidase M22, glycoprotease; KEGG: mta:Moth_2159 peptidase M22, glycoprotease YP_001718139.1 PFAM: protein of unknown function UPF0079; KEGG: mta:Moth_2160 protein of unknown function UPF0079 YP_001718140.1 KEGG: mta:Moth_1157 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein YP_001718141.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001718142.1 KEGG: tel:tlr1947 thiamin-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001718143.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: dsy:DSY3978 hypothetical protein YP_001718144.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: mta:Moth_2164 peptidase C26 YP_001718145.1 KEGG: chy:CHY_0704 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_001718146.1 PFAM: glutamate synthase, alpha subunit domain protein; KEGG: chy:CHY_0708 GXGXG domain protein YP_001718147.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: chy:CHY_0707 glutamate synthase, homolog YP_001718148.1 PFAM: glutamine amidotransferase, class-II; KEGG: chy:CHY_0706 hypothetical protein YP_001718149.1 KEGG: mta:Moth_1297 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_001718150.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: mta:Moth_1295 response regulator receiver (CheY-like) and ANTAR domain protein YP_001718151.1 KEGG: chy:CHY_0711 glutamate synthase, homolog YP_001718152.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: mta:Moth_1297 glutamine synthetase, type I YP_001718153.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: mta:Moth_1295 response regulator receiver (CheY-like) and ANTAR domain protein YP_001718154.1 PFAM: aminotransferase, class IV; KEGG: rxy:Rxyl_0760 aminotransferase, class IV YP_001718155.1 KEGG: mta:Moth_2108 para-aminobenzoate synthase component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_001718156.1 PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY3748 hypothetical protein YP_001718157.1 PFAM: ExsB family protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: mta:Moth_1650 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_001718158.1 KEGG: sth:STH2334 hypothetical protein YP_001718159.1 KEGG: mta:Moth_1697 hypothetical protein YP_001718160.1 Heat shock-induced YP_001718161.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: mta:Moth_0824 transcriptional regulator, Crp/Fnr family YP_001718162.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein YP_001718163.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: chy:CHY_2201 ATPase, AAA family YP_001718164.1 PFAM: VanW family protein; copper amine oxidase domain protein; KEGG: mta:Moth_0694 copper amine oxidase-like YP_001718165.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: bld:BLi04290 putative alcohol dehydrogenase/acetaldehyde dehydrogenase; RBL03615 YP_001718167.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: bcl:ABC1681 GTP-binding protein Era, Era/TrmE family YP_001718168.1 TIGRFAM: cytidine deaminase; PFAM: protein of unknown function UPF0054; CMP/dCMP deaminase, zinc-binding; KEGG: mta:Moth_0599 cytidine deaminase, homotetrameric YP_001718169.1 KEGG: chy:CHY_0426 HDIG domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; metal-dependent phosphohydrolase, 7TM extracellular region; SMART: metal-dependent phosphohydrolase, HD region YP_001718170.1 PFAM: PhoH family protein; KH, type 1, domain protein; KEGG: chy:CHY_0425 PhoH-like protein YP_001718171.1 PFAM: putative stage IV sporulation YqfD; KEGG: mta:Moth_0592 putative stage IV sporulation YqfD YP_001718172.1 PFAM: protein of unknown function DUF1429; KEGG: mta:Moth_0591 protein of unknown function DUF1429 YP_001718173.1 PFAM: ribosomal protein S21; KEGG: dsy:DSY3123 30S ribosomal protein S21 YP_001718174.1 PFAM: histidine triad (HIT) protein; KEGG: swo:Swol_1572 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_001718175.1 KEGG: mta:Moth_0588 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB YP_001718176.1 PFAM: protein of unknown function DUF558; KEGG: chy:CHY_0418 conserved hypothetical protein TIGR00046 YP_001718177.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gka:GK2502 ribosomal protein L11 methyltransferase YP_001718178.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: mta:Moth_0586 chaperone DnaJ YP_001718179.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: chy:CHY_0415 molecular chaperone DnaK YP_001718180.1 PFAM: GrpE protein; KEGG: dsy:DSY3131 hypothetical protein YP_001718181.1 PFAM: chaperonin Cpn60/TCP-1; KEGG: chy:CHY_0413 thermosome, alpha subunit YP_001718182.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: chy:CHY_0412 heat-inducible transcription repressor HrcA YP_001718183.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001718184.1 PFAM: LmbE family protein; KEGG: deh:cbdb_A213 LmbE-like family protein YP_001718185.1 PFAM: glycosyl transferase, group 1; KEGG: lpp:lpp1602 hypothetical protein YP_001718187.1 PFAM: Stage II sporulation P family protein; KEGG: mta:Moth_0578 hypothetical protein YP_001718188.1 KEGG: mta:Moth_0580 hypothetical protein YP_001718189.1 PFAM: ribosomal protein S20; KEGG: chy:CHY_0406 ribosomal protein S20 YP_001718190.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: mta:Moth_0576 DNA polymerase III, delta subunit YP_001718191.1 PFAM: protein of unknown function DUF77; KEGG: ade:Adeh_2552 protein of unknown function DUF77 YP_001718192.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: mta:Moth_0575 DNA internalization-related competence protein ComEC/Rec2 YP_001718193.1 KEGG: mta:Moth_0570 competence protein ComEA helix-hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_001718194.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0046 putative keto/oxoacid ferredoxin oxidoreductase, delta subunit YP_001718195.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: chy:CHY_0045 putative keto/oxoacid ferredoxin oxidoreductase, gamma subunit YP_001718196.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: chy:CHY_0043 putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit YP_001718197.1 KEGG: chy:CHY_0042 hypothetical protein YP_001718198.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: chy:CHY_0166 putative transketolase, C-terminal subunit YP_001718199.1 PFAM: Transketolase domain protein; KEGG: mta:Moth_0236 transketolase-like YP_001718200.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: bcl:ABC3067 peptide chain release factor 2 YP_001718201.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001718202.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: swo:Swol_0237 sigma 54 modulation protein/ribosomal protein S30EA YP_001718203.1 PFAM: phosphoribosyltransferase; KEGG: swo:Swol_0188 phosphoribosyltransferase YP_001718204.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: tte:TTE2335 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF) YP_001718205.1 PFAM: S-adenosylmethionine synthetase; KEGG: chy:CHY_0138 S-adenosylmethionine synthetase YP_001718206.1 PFAM: protein of unknown function DUF1284; KEGG: afu:AF1814 hypothetical protein YP_001718207.1 PFAM: BioY protein; KEGG: det:DET1184 BioY family protein YP_001718208.1 PFAM: PRC-barrel domain protein; KEGG: chy:CHY_2053 PRC-barrel domain protein YP_001718209.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: mta:Moth_0216 integral membrane protein MviN YP_001718210.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mta:Moth_0221 phosphoglucomutase YP_001718211.1 PFAM: protein of unknown function DUF421; KEGG: chy:CHY_2581 hypothetical protein YP_001718212.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: chy:CHY_2582 UTP-glucose-1-phosphate uridylyltransferase YP_001718213.1 PFAM: glycosyl transferase, family 4; KEGG: mta:Moth_0218 glycosyl transferase, family 4 YP_001718214.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: thioesterase superfamily protein; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; KEGG: rxy:Rxyl_1380 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ YP_001718215.1 KEGG: mta:Moth_0214 hypothetical protein YP_001718216.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: chy:CHY_2591 putative transcriptional regulator YP_001718217.1 PFAM: polysaccharide pyruvyl transferase; KEGG: mta:Moth_0215 polysaccharide pyruvyl transferase YP_001718218.1 KEGG: mta:Moth_2138 hypothetical protein YP_001718219.1 KEGG: mta:Moth_2365 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_001718220.1 PFAM: acriflavin resistance protein; KEGG: swo:Swol_0176 acriflavin resistance protein YP_001718221.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mta:Moth_2322 secretion protein HlyD YP_001718222.1 PFAM: regulatory protein, MarR; KEGG: bsu:BG14027 similar to transcriptional regulator (MarR family) YP_001718223.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: sth:STH2093 putative heme O synthase YP_001718224.1 KEGG: mta:Moth_2315 hypothetical protein YP_001718225.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: gka:GK0493 transcriptional regulator YP_001718226.1 PFAM: polysaccharide deacetylase; KEGG: eca:ECA4453 putative hemin storage lipoprotein YP_001718227.1 PFAM: PilT protein domain protein; KEGG: mta:Moth_0252 PilT protein-like YP_001718228.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: mta:Moth_0253 transcriptional regulator, AbrB family YP_001718229.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; S-layer domain protein; KEGG: mhu:Mhun_0648 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001718230.1 KEGG: swo:Swol_0986 hypothetical protein YP_001718231.1 KEGG: chy:CHY_1822 hypothetical protein YP_001718232.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: hwa:HQ3491A transcription regulator YP_001718233.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: mta:Moth_2333 protein of unknown function DUF132 YP_001718234.1 PFAM: protein of unknown function UPF0150; KEGG: pfu:PF1322 hypothetical protein YP_001718235.1 PFAM: S-layer domain protein; KEGG: sth:STH3168 S-layer associated protein, putataive YP_001718236.1 KEGG: mta:Moth_2320 hypothetical protein YP_001718237.1 KEGG: mta:Moth_2321 hypothetical protein YP_001718238.1 PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_0133 hypothetical protein YP_001718239.1 KEGG: mta:Moth_2342 outer membrane protein-like YP_001718240.1 PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_2343 copper amine oxidase-like YP_001718241.1 PFAM: PilT protein domain protein; KEGG: mbo:Mb2579c hypothetical protein YP_001718242.1 PFAM: CopG domain protein DNA-binding domain protein YP_001718243.1 PFAM: PemK family protein; KEGG: rha:RHA1_ro08006 possible growth inhibitor YP_001718244.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: swo:Swol_0132 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001718245.1 KEGG: mta:Moth_2363 putative transmembrane transcriptional regulator (anti-sigma factor) YP_001718246.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: mta:Moth_0687 transcriptional regulator, AbrB family YP_001718247.1 PFAM: PilT protein domain protein; KEGG: mta:Moth_0688 PilT protein-like YP_001718248.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; S-layer domain protein; KEGG: mta:Moth_2364 peptidase S8 and S53, subtilisin, kexin, sedolisin YP_001718249.1 PFAM: PilT protein domain protein; KEGG: ana:all5132 hypothetical protein YP_001718250.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172 YP_001718251.1 KEGG: mta:Moth_2514 hypothetical protein YP_001718252.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: mta:Moth_2371 cell shape determining protein, MreB/Mrl family YP_001718253.1 TIGRFAM: regulatory protein, DeoR; KEGG: dsy:DSY4887 hypothetical protein YP_001718254.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: chy:CHY_2541 stage II sporulation protein D YP_001718255.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: chy:CHY_2544 ATP synthase F1, epsilon subunit YP_001718256.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001718257.1 KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit YP_001718258.1 KEGG: chy:CHY_2547 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein YP_001718259.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001718260.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: dsy:DSY4916 ATP synthase F0 B subunit YP_001718261.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: dsy:DSY4917 ATP synthase F0 C subunit YP_001718262.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: dsy:DSY4918 ATP synthase F0 A subunit YP_001718264.1 KEGG: gka:GK3366 hypothetical protein YP_001718265.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dsy:DSY4924 hypothetical protein YP_001718266.1 PFAM: glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: dsy:DSY4927 hypothetical protein YP_001718267.1 TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: gka:GK3371 ribose 5-phosphate isomerase YP_001718268.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sth:STH76 low molecular weight protein-tyrosine-phosphatase YP_001718269.1 PFAM: protein of unknown function DUF204; KEGG: chy:CHY_2560 hypothetical protein YP_001718270.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: sth:STH75 putative translation factor YP_001718271.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: chy:CHY_2562 modification methylase, HemK family YP_001718272.1 PFAM: protein of unknown function DUF1568; KEGG: rba:RB2408 hypothetical protein YP_001718273.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: chy:CHY_2563 peptide chain release factor 1 YP_001718274.1 PFAM: protein of unknown function DUF1385; KEGG: swo:Swol_2398 hypothetical protein YP_001718275.1 PFAM: ribosomal protein L31; KEGG: chy:CHY_2565 ribosomal protein L31 YP_001718276.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rxy:Rxyl_0085 twin-arginine translocation pathway signal YP_001718277.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_001718279.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: hma:rrnAC3530 NADH dehydrogenase I L subunit YP_001718280.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rru:Rru_A1635 NADH dehydrogenase (quinone) YP_001718281.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L YP_001718282.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sfr:Sfri_2284 Na+/H+ antiporter MnhB subunit-related protein YP_001718283.1 KEGG: rru:Rru_A1638 putative multicomponent Na+-H+ antiporter subunit A YP_001718284.1 KEGG: hma:rrnAC3534 putative multicomponent Na+:H+ antiporter subunit B YP_001718285.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: hwa:HQ1676A pH adaptation potassium efflux system protein G; sodium-potassium/hydrogen antiporter subunit G YP_001718286.1 PFAM: multiple resistance and pH regulation protein F; KEGG: hne:HNE_0730 monovalent cation/proton antiporter, MnhF/PhaF family YP_001718287.1 PFAM: cation antiporter; KEGG: hwa:HQ1674A pH adaptation potassium efflux system protein E; sodium-potassium/hydrogen antiporter subunit E YP_001718289.1 PFAM: conserved hypothetical protein 698; KEGG: dvu:DVU0943 hypothetical protein YP_001718290.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_0131 radical SAM domain protein YP_001718291.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: lbl:LBL_2791 metalloendopeptidase YP_001718292.1 KEGG: mta:Moth_2402 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; Rho termination factor domain protein; Rho termination factor, RNA-binding; SMART: AAA ATPase; Cold shock protein YP_001718293.1 KEGG: mta:Moth_2403 transaldolase, putative; TIGRFAM: putative transaldolase; PFAM: Transaldolase YP_001718294.1 KEGG: chy:CHY_0128 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II YP_001718295.1 KEGG: mta:Moth_2405 hypothetical protein YP_001718296.1 PFAM: response regulator receiver; KEGG: dsy:DSY4941 hypothetical protein YP_001718297.1 KEGG: tte:TTE0755 hypothetical protein YP_001718298.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: sth:STH2792 putative proteinase IV YP_001718299.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001718300.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001718301.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: mta:Moth_1188 aminotransferase, class I and II YP_001718302.1 PFAM: regulatory protein, AsnC/Lrp family; KEGG: chy:CHY_0114 transcriptional regulator, AsnC family YP_001718303.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: tac:Ta0318m adenine-specific DNA methylase YP_001718304.1 KEGG: tte:TTE2550 putative spore germination protein YP_001718305.1 PFAM: cell wall hydrolase, SleB; KEGG: mta:Moth_0202 cell wall hydrolase, SleB YP_001718306.1 PFAM: Endonuclease V; KEGG: rxy:Rxyl_2425 deoxyribonuclease V YP_001718307.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: lic:LIC10591 periplasmic divalent cation tolerance YP_001718308.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mta:Moth_1628 cobyrinic acid a,c-diamide synthase YP_001718309.1 PFAM: DsrC family protein; KEGG: mta:Moth_1632 DsrC-like protein YP_001718310.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: chy:CHY_2403 putative reductase, iron-sulfur cluster-binding subunit YP_001718311.1 KEGG: dsy:DSY4518 hypothetical protein YP_001718312.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_2405 ferredoxin YP_001718313.1 PFAM: transposase, IS4 family protein; KEGG: lsa:LSA1181 transposase (orfB) of ISLsa3 (IS4 family) YP_001718314.1 TIGRFAM: putative regulatory protein, FmdB family; KEGG: mta:Moth_1596 hypothetical protein YP_001718315.1 PFAM: HEAT domain containing protein; KEGG: mta:Moth_1597 PBS lyase heat-like repeat YP_001718316.1 KEGG: dde:Dde_3774 hypothetical protein YP_001718317.1 PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mta:Moth_1598 hypothetical protein YP_001718318.1 KEGG: mta:Moth_1599 dissimilatory sulfite reductase B YP_001718319.1 KEGG: mta:Moth_1600 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_001718320.1 KEGG: mta:Moth_1601 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_001718321.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: swo:Swol_2469 UDP-N-acetylglucosamine enolpyruvyl transferase YP_001718322.1 KEGG: mta:Moth_2418 hypothetical protein YP_001718323.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: chy:CHY_2624 TPR domain protein YP_001718324.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein; KEGG: mta:Moth_2422 peptidase M23B YP_001718325.1 PFAM: Radical SAM domain protein; KEGG: chy:CHY_2627 radical SAM domain protein YP_001718326.1 KEGG: chy:CHY_2628 hypothetical protein YP_001718327.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: mta:Moth_1136 putative signal transduction protein with CBS domains YP_001718328.1 PFAM: adenylosuccinate synthetase; KEGG: chy:CHY_2670 adenylosuccinate synthetase YP_001718329.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: chy:CHY_2671 hypothetical protein YP_001718330.1 KEGG: dsy:DSY5029 hypothetical protein; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase YP_001718331.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001718332.1 KEGG: chy:CHY_0038 hypothetical protein YP_001718333.1 PFAM: ribosomal protein S18; KEGG: dsy:DSY5034 30S ribosomal protein S18 YP_001718334.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: chy:CHY_0036 single-strand binding protein YP_001718335.1 PFAM: ribosomal protein S6; KEGG: chy:CHY_0035 ribosomal protein S6 YP_001718337.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; KEGG: chy:CHY_0031 GTP-binding protein YchF YP_001718338.1 PFAM: protein of unknown function DUF951; KEGG: cpr:CPR_2657 hypothetical protein YP_001718339.1 PFAM: Colicin V production protein; KEGG: sth:STH3323 hypothetical protein YP_001718340.1 KEGG: mta:Moth_1876 hypothetical protein YP_001718341.1 PFAM: protein of unknown function DUF1256; KEGG: bha:BH4054 hypothetical protein YP_001718342.1 KEGG: chy:CHY_0019 hypothetical protein YP_001718343.1 PFAM: phosphoribosyltransferase; KEGG: mta:Moth_2509 phosphoribosyltransferase YP_001718344.1 KEGG: cpf:CPF_2986 hypothetical protein YP_001718345.1 PFAM: ExsB family protein; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268 YP_001718346.1 PFAM: protein of unknown function DUF111; KEGG: mta:Moth_2512 protein of unknown function DUF111 YP_001718347.1 KEGG: dra:DR0015 hypothetical protein YP_001718348.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: sth:STH3332 ParBc, ParB-like nuclease domain YP_001718349.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bsu:BG10055 soj protein YP_001718350.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: dge:Dgeo_2335 methyltransferase GidB YP_001718351.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001718352.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: mta:Moth_2519 tRNA modification GTPase TrmE YP_001718353.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: chy:CHY_0005 jag protein YP_001718354.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: chy:CHY_0004 sporulation associated-membrane protein YP_001718355.1 PFAM: protein of unknown function DUF37; KEGG: ana:asr1611 hypothetical protein YP_001718356.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: tte:TTE2801 RNase P protein component YP_001718357.1 PFAM: ribosomal protein L34; KEGG: chy:CHY_0001 ribosomal protein L34 YP_001718358.1 PFAM: protein of unknown function UPF0236; KEGG: mta:Moth_2232 hypothetical protein