-- dump date 20120504_140832 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002922929.1 238897252 7951971 complement(1..468) 1 NC_012751.1 required for biotin synthase activity; COG0716; FMN-binding protein 468 mioC 7951971 mioC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) FMN-binding protein YP_002922929.1 1 R 340054 CDS YP_002922930.1 238897253 7949607 817..1650 1 NC_012751.1 uncertain polar amino acid substrates; COG0834; polar amino acid ABC transporter periplasmic amino acid-binding subunit 1650 7949607 HDEF_0002 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polar amino acid ABC transporter periplasmic amino acid-binding subunit YP_002922930.1 817 D 340054 CDS YP_002922931.1 238897254 7949608 1791..2534 1 NC_012751.1 uncertain polar amino acid substrates; COG0765; polar amino acid ABC transporter permease 2534 7949608 HDEF_0003 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polar amino acid ABC transporter permease YP_002922931.1 1791 D 340054 CDS YP_002922932.1 238897255 7949609 2536..3213 1 NC_012751.1 uncertain polar amino acid substrates; COG0765; polar amino acid ABC transporter permease 3213 7949609 HDEF_0004 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polar amino acid ABC transporter permease YP_002922932.1 2536 D 340054 CDS YP_002922933.1 238897256 7949611 complement(4537..5013) 1 NC_012751.1 hypothetical protein 5013 7949611 HDEF_0006 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922933.1 4537 R 340054 CDS YP_002922934.1 238897257 7949612 complement(5243..5656) 1 NC_012751.1 C terminal truncation; COG3710; regulatory membrane protein 5656 7949612 HDEF_0007 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) regulatory membrane protein YP_002922934.1 5243 R 340054 CDS YP_002922935.1 238897258 7949613 complement(5869..6132) 1 NC_012751.1 N terminal truncation; hypothetical protein 6132 7949613 HDEF_0008 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922935.1 5869 R 340054 CDS YP_002922936.1 238897259 7949614 complement(6813..8327) 1 NC_012751.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 8327 lysS 7949614 lysS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lysyl-tRNA synthetase YP_002922936.1 6813 R 340054 CDS YP_002922937.1 238897260 7949615 complement(8337..9383) 1 NC_012751.1 COG1186; peptide chain release factor RF-2 9383 prfB 7949615 prfB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide chain release factor RF-2 YP_002922937.1 8337 R 340054 CDS YP_002922938.1 238897261 7949616 complement(9358..9462) 1 NC_012751.1 hypothetical protein 9462 7949616 HDEF_0011 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922938.1 9358 R 340054 CDS YP_002922939.1 238897262 7949617 9713..12340 1 NC_012751.1 COG0013; alanyl-tRNA synthetase 12340 alaS 7949617 alaS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alanyl-tRNA synthetase YP_002922939.1 9713 D 340054 CDS YP_002922940.1 238897263 7949618 12533..12769 1 NC_012751.1 post-translational activator of flhDC expression, regulates biofilm formation, RNA-binding; COG1551; carbon storage regulator 12769 csrA 7949618 csrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carbon storage regulator YP_002922940.1 12533 D 340054 CDS YP_002922941.1 238897264 7949621 complement(13264..15036) 1 NC_012751.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 15036 cvrA 7949621 cvrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) potassium/proton antiporter YP_002922941.1 13264 R 340054 CDS YP_002922942.1 238897265 7949622 complement(15234..15839) 1 NC_012751.1 required for chromosome resolution and partitioning; COG1674; DNA-binding membrane protein 15839 ftsK 7949622 ftsK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding membrane protein YP_002922942.1 15234 R 340054 CDS YP_002922943.1 238897266 7949624 17170..17262 1 NC_012751.1 hypothetical protein 17262 7949624 HDEF_0019 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922943.1 17170 D 340054 CDS YP_002922944.1 238897267 7949625 17243..17956 1 NC_012751.1 inhibits FtsZ ring formation; COG0850; cell division inhibitor minC 17956 minC 7949625 minC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division inhibitor minC YP_002922944.1 17243 D 340054 CDS YP_002922945.1 238897268 7949626 17973..18785 1 NC_012751.1 COG2894; cell division inhibitor minD 18785 minD 7949626 minD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division inhibitor minD YP_002922945.1 17973 D 340054 CDS YP_002922946.1 238897269 7949627 18789..19073 1 NC_012751.1 COG0851; cell division topological specificity factor 19073 minE 7949627 minE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division topological specificity factor YP_002922946.1 18789 D 340054 CDS YP_002922947.1 238897270 7949628 complement(19273..20265) 1 NC_012751.1 COG0057; glyceraldehyde-3-phosphate dehydrogenase A 20265 gapA 7949628 gapA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glyceraldehyde-3-phosphate dehydrogenase A YP_002922947.1 19273 R 340054 CDS YP_002922948.1 238897271 7949629 complement(20522..21586) 1 NC_012751.1 COG0628; permease 21586 7949629 HDEF_0024 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) permease YP_002922948.1 20522 R 340054 CDS YP_002922949.1 238897272 7949630 complement(21654..22718) 1 NC_012751.1 COG0468; DNA strand exchange and recombination protein with protease and nuclease activity 22718 recA 7949630 recA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA strand exchange and recombination protein with protease and nuclease activity YP_002922949.1 21654 R 340054 CDS YP_002922950.1 238897273 7949631 22978..23670 1 NC_012751.1 COG2360; leucyl/phenylalanyl-tRNA-protein transferase 23670 aat 7949631 aat Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) leucyl/phenylalanyl-tRNA-protein transferase YP_002922950.1 22978 D 340054 CDS YP_002922951.1 238897274 7949632 complement(23655..24839) 1 NC_012751.1 COG0654; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding 24839 ubiH 7949632 ubiH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding YP_002922951.1 23655 R 340054 CDS YP_002922952.1 238897275 7949634 26421..28352 1 NC_012751.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 28352 rnb 7949634 rnb Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exoribonuclease II YP_002922952.1 26421 D 340054 CDS YP_002922953.1 238897276 7949635 complement(28359..29537) 1 NC_012751.1 COG1985; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) 29537 ribD 7949635 ribD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) YP_002922953.1 28359 R 340054 CDS YP_002922954.1 238897277 7949636 complement(29550..30023) 1 NC_012751.1 COG1327; transcriptional regulator 30023 nrdR 7949636 nrdR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002922954.1 29550 R 340054 CDS YP_002922955.1 238897278 7949637 complement(30054..31940) 1 NC_012751.1 helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha 31940 recD 7949637 recD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease V subunit alpha YP_002922955.1 30054 R 340054 CDS YP_002922956.1 238897279 7949638 complement(31943..35569) 1 NC_012751.1 helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta 35569 recB 7949638 recB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease V subunit beta YP_002922956.1 31943 R 340054 CDS YP_002922957.1 238897280 7949639 complement(35535..38906) 1 NC_012751.1 catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma 38906 recC 7949639 recC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease V subunit gamma YP_002922957.1 35535 R 340054 CDS YP_002922958.1 238897281 7949640 complement(38965..39333) 1 NC_012751.1 possible prepilin peptidase; hypothetical protein 39333 7949640 HDEF_0035 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922958.1 38965 R 340054 CDS YP_002922959.1 238897282 7949641 complement(39375..39854) 1 NC_012751.1 hypothetical protein 39854 7949641 HDEF_0036 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922959.1 39375 R 340054 CDS YP_002922960.1 238897283 7949642 complement(39851..40468) 1 NC_012751.1 possibly in type IV pilin biogenesis; COG4795; hypothetical protein 40468 pulJ 7949642 pulJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922960.1 39851 R 340054 CDS YP_002922961.1 238897284 7949643 complement(40459..40959) 1 NC_012751.1 COG2165; hypothetical protein 40959 7949643 HDEF_0038 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922961.1 40459 R 340054 CDS YP_002922962.1 238897285 7949644 complement(40913..41047) 1 NC_012751.1 hypothetical protein 41047 7949644 HDEF_0039 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922962.1 40913 R 340054 CDS YP_002922963.1 238897286 7949645 complement(41121..42533) 1 NC_012751.1 COG0362; gluconate-6-phosphate dehydrogenase, decarboxylating 42533 gnd 7949645 gnd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) gluconate-6-phosphate dehydrogenase, decarboxylating YP_002922963.1 41121 R 340054 CDS YP_002922964.1 238897287 7949646 complement(42595..43488) 1 NC_012751.1 COG1210; glucose-1-phosphate uridylyltransferase 43488 galU 7949646 galU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glucose-1-phosphate uridylyltransferase YP_002922964.1 42595 R 340054 CDS YP_002922965.1 238897288 7949647 complement(43724..45553) 1 NC_012751.1 YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein 45553 asmA 7949647 asmA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) assembly protein YP_002922965.1 43724 R 340054 CDS YP_002922966.1 238897289 7949648 complement(45635..46216) 1 NC_012751.1 COG0717; 2'-deoxycytidine 5'-triphosphate deaminase 46216 dcd 7949648 dcd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2'-deoxycytidine 5'-triphosphate deaminase YP_002922966.1 45635 R 340054 CDS YP_002922967.1 238897290 7949649 complement(46213..47802) 1 NC_012751.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 47802 lnt 7949649 lnt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) apolipoprotein N-acyltransferase YP_002922967.1 46213 R 340054 CDS YP_002922968.1 238897291 7949650 47846..47938 1 NC_012751.1 hypothetical protein 47938 7949650 HDEF_0045 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922968.1 47846 D 340054 CDS YP_002922969.1 238897292 7949651 complement(47892..48773) 1 NC_012751.1 COG4535; Mg2+ and Co2+ transporter 48773 corC 7949651 corC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mg2+ and Co2+ transporter YP_002922969.1 47892 R 340054 CDS YP_002922970.1 238897293 7949652 complement(48846..49301) 1 NC_012751.1 COG0319; metal-dependent hydrolase 49301 7949652 HDEF_0047 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) metal-dependent hydrolase YP_002922970.1 48846 R 340054 CDS YP_002922971.1 238897294 7949653 49531..50460 1 NC_012751.1 COG0451; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 50460 rfaD 7949653 rfaD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding YP_002922971.1 49531 D 340054 CDS YP_002922972.1 238897295 7949654 50492..52138 1 NC_012751.1 COG0166; glucosephosphate isomerase 52138 pgi 7949654 pgi Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glucosephosphate isomerase YP_002922972.1 50492 D 340054 CDS YP_002922973.1 238897296 7949655 52280..53521 1 NC_012751.1 COG0477; multidrug/chloramphenicol efflux transport protein (MFS family) 53521 cmrA 7949655 cmrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multidrug/chloramphenicol efflux transport protein (MFS family) YP_002922973.1 52280 D 340054 CDS YP_002922974.1 238897297 7949656 53568..54818 1 NC_012751.1 COG0477; multidrug/chloramphenicol efflux transport protein (MFS family) 54818 cmrB 7949656 cmrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multidrug/chloramphenicol efflux transport protein (MFS family) YP_002922974.1 53568 D 340054 CDS YP_002922975.1 238897298 7949657 54815..55444 1 NC_012751.1 COG0605; superoxide dismutase, manganese 55444 sod 7949657 sod Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) superoxide dismutase, manganese YP_002922975.1 54815 D 340054 CDS YP_002922976.1 238897299 7949658 complement(55476..56243) 1 NC_012751.1 COG0149; triosephosphate isomerase 56243 tpiA 7949658 tpiA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) triosephosphate isomerase YP_002922976.1 55476 R 340054 CDS YP_002922977.1 238897300 7949659 complement(56323..57069) 1 NC_012751.1 COG1018; ferredoxin-NADP reductase 57069 fpr 7949659 fpr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ferredoxin-NADP reductase YP_002922977.1 56323 R 340054 CDS YP_002922978.1 238897301 7949660 57102..57335 1 NC_012751.1 COG2900; hypothetical protein 57335 7949660 HDEF_0055 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922978.1 57102 D 340054 CDS YP_002922979.1 238897302 7949661 complement(57343..59166) 1 NC_012751.1 COG1217; protein possibly involved in LPS biosynthesis and host colonization 59166 typA 7949661 typA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein possibly involved in LPS biosynthesis and host colonization YP_002922979.1 57343 R 340054 CDS YP_002922980.1 238897303 7949662 complement(59531..59845) 1 NC_012751.1 important in general stress response; COG0271; transcriptional activator of morphogenic pathway (BolA family) 59845 bolA 7949662 bolA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional activator of morphogenic pathway (BolA family) YP_002922980.1 59531 R 340054 CDS YP_002922981.1 238897304 7949663 complement(59842..60750) 1 NC_012751.1 involved in removal of stalled replication fork with Rh-like domain; COG2974; ribonuclease 60750 rgdC 7949663 rgdC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribonuclease YP_002922981.1 59842 R 340054 CDS YP_002922982.1 238897305 7949664 60938..61309 1 NC_012751.1 COG0316; Fe-S cluster assembly protein 61309 sufA 7949664 sufA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Fe-S cluster assembly protein YP_002922982.1 60938 D 340054 CDS YP_002922983.1 238897306 7949665 61360..62862 1 NC_012751.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 62862 sufB 7949665 sufB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteine desulfurase activator complex subunit SufB YP_002922983.1 61360 D 340054 CDS YP_002922984.1 238897307 7949666 62965..63705 1 NC_012751.1 part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase 63705 sufC 7949666 sufC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteine desulfurase ATPase YP_002922984.1 62965 D 340054 CDS YP_002922985.1 238897308 7949667 63686..64984 1 NC_012751.1 COG0719; required for stability of Fe-S component of FhuF 64984 sufD 7949667 sufD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) required for stability of Fe-S component of FhuF YP_002922985.1 63686 D 340054 CDS YP_002922986.1 238897309 7949668 64981..66240 1 NC_012751.1 COG0520; selenocysteine lyase, PLP-dependent 66240 sufS 7949668 sufS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) selenocysteine lyase, PLP-dependent YP_002922986.1 64981 D 340054 CDS YP_002922987.1 238897310 7949669 66276..66704 1 NC_012751.1 COG2166; stimulator of SufS activity 66704 sufE 7949669 sufE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) stimulator of SufS activity YP_002922987.1 66276 D 340054 CDS YP_002922988.1 238897311 7949670 complement(66701..67573) 1 NC_012751.1 COG0109; protoheme IX farnesyltransferase (heme O biosynthesis) 67573 cyoE 7949670 cyoE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protoheme IX farnesyltransferase (heme O biosynthesis) YP_002922988.1 66701 R 340054 CDS YP_002922989.1 238897312 7949672 67476..67634 1 NC_012751.1 hypothetical protein 67634 7949672 HDEF_0065 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002922989.1 67476 D 340054 CDS YP_002922990.1 238897313 7949671 complement(67587..67985) 1 NC_012751.1 COG3125; cytochrome o ubiquinol oxidase, subunit IV 67985 cyoD 7949671 cyoD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome o ubiquinol oxidase, subunit IV YP_002922990.1 67587 R 340054 CDS YP_002922991.1 238897314 7949673 complement(67986..68600) 1 NC_012751.1 COG1845; cytochrome o ubiquinol oxidase, subunit III 68600 cyoC 7949673 cyoC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome o ubiquinol oxidase, subunit III YP_002922991.1 67986 R 340054 CDS YP_002922992.1 238897315 7949674 complement(68608..70599) 1 NC_012751.1 COG0843; cytochrome o ubiquinol oxidase, subunit I-1 70599 cyoB_1 7949674 cyoB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome o ubiquinol oxidase, subunit I-1 YP_002922992.1 68608 R 340054 CDS YP_002922993.1 238897316 7949675 complement(70603..71490) 1 NC_012751.1 COG1622; cytochrome o ubiquinol oxidase, subunit II-1 71490 cyoA_1 7949675 cyoA_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome o ubiquinol oxidase, subunit II-1 YP_002922993.1 70603 R 340054 CDS YP_002922994.1 238897317 7949676 complement(71670..72851) 1 NC_012751.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 72851 ubiF 7949676 ubiF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_002922994.1 71670 R 340054 CDS YP_002922995.1 238897318 7949677 complement(72874..74217) 1 NC_012751.1 COG0439; acetyl CoA carboxylase, biotin carboxylase subunit 74217 accC 7949677 accC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetyl CoA carboxylase, biotin carboxylase subunit YP_002922995.1 72874 R 340054 CDS YP_002922996.1 238897319 7949678 complement(74229..74666) 1 NC_012751.1 COG0511; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit 74666 accB 7949678 accB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit YP_002922996.1 74229 R 340054 CDS YP_002922997.1 238897320 7949679 complement(74677..75174) 1 NC_012751.1 COG0757; 3-dehydroquinate dehydratase, class II 75174 aroQ 7949679 aroQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-dehydroquinate dehydratase, class II YP_002922997.1 74677 R 340054 CDS YP_002922998.1 238897321 7949680 complement(75277..76338) 1 NC_012751.1 tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase 76338 aroH 7949680 aroH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phospho-2-dehydro-3-deoxyheptonate aldolase YP_002922998.1 75277 R 340054 CDS YP_002922999.1 238897322 7949681 complement(76574..76855) 1 NC_012751.1 COG2168; tRNA 2-thiouridine synthesizing protein B 76855 tusB 7949681 tusB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA 2-thiouridine synthesizing protein B YP_002922999.1 76574 R 340054 CDS YP_002923000.1 238897323 7949682 complement(76868..77239) 1 NC_012751.1 COG2923; tRNA 2-thiouridine synthesizing protein C 77239 tusC 7949682 tusC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA 2-thiouridine synthesizing protein C YP_002923000.1 76868 R 340054 CDS YP_002923001.1 238897324 7949683 complement(77253..77651) 1 NC_012751.1 COG1553; tRNA 2-thiouridine synthesizing sulfurtransferase D 77651 tusD 7949683 tusD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA 2-thiouridine synthesizing sulfurtransferase D YP_002923001.1 77253 R 340054 CDS YP_002923002.1 238897325 7949684 complement(77708..78466) 1 NC_012751.1 COG0545; FKBP-type peptidyl-prolyl cis-trans isomerase 78466 fkpA 7949684 fkpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) FKBP-type peptidyl-prolyl cis-trans isomerase YP_002923002.1 77708 R 340054 CDS YP_002923003.1 238897326 7949685 78664..82293 1 NC_012751.1 hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance 82293 evgS 7949685 evgS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance YP_002923003.1 78664 D 340054 CDS YP_002923004.1 238897327 7949686 82410..83477 1 NC_012751.1 COG1054; hypothetical protein 83477 7949686 HDEF_0081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923004.1 82410 D 340054 CDS YP_002923005.1 238897328 7949687 complement(83456..84424) 1 NC_012751.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 84424 secF 7949687 secF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase subunit SecF YP_002923005.1 83456 R 340054 CDS YP_002923006.1 238897329 7949688 complement(84449..86302) 1 NC_012751.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 86302 secD 7949688 secD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase subunit SecD YP_002923006.1 84449 R 340054 CDS YP_002923007.1 238897330 7949689 complement(86448..86789) 1 NC_012751.1 COG1862; preprotein translocase, auxillary membrane component (General Secretory Pathway) 86789 yajC 7949689 yajC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase, auxillary membrane component (General Secretory Pathway) YP_002923007.1 86448 R 340054 CDS YP_002923008.1 238897331 7949690 complement(86946..88058) 1 NC_012751.1 COG0343; tRNA-guanine transglycosylase 88058 tgt 7949690 tgt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA-guanine transglycosylase YP_002923008.1 86946 R 340054 CDS YP_002923009.1 238897332 7949691 complement(88097..89170) 1 NC_012751.1 COG0809; S-adenosylmethionine:tRNA (m6t6A37) ribosyltransferase-isomerase 89170 queA 7949691 queA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) S-adenosylmethionine:tRNA (m6t6A37) ribosyltransferase-isomerase YP_002923009.1 88097 R 340054 CDS YP_002923010.1 238897333 7949692 89527..90150 1 NC_012751.1 detoxification of hydroperoxides; COG0450; alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like protein 90150 ahpC 7949692 ahpC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like protein YP_002923010.1 89527 D 340054 CDS YP_002923011.1 238897334 7949693 90250..91032 1 NC_012751.1 COG2853; lipoprotein precursor 91032 vacJ 7949693 vacJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein precursor YP_002923011.1 90250 D 340054 CDS YP_002923012.1 238897335 7949694 91183..93633 1 NC_012751.1 COG2937; glycerolphosphate acyltransferase 93633 plsB 7949694 plsB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycerolphosphate acyltransferase YP_002923012.1 91183 D 340054 CDS YP_002923013.1 238897336 7949695 complement(93636..94904) 1 NC_012751.1 COG0513; ATP-dependent RNA helicase 94904 rhlB 7949695 rhlB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent RNA helicase YP_002923013.1 93636 R 340054 CDS YP_002923014.1 238897337 7949696 95017..95343 1 NC_012751.1 COG0526; thioredoxin 1, redox factor 95343 trxA 7949696 trxA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thioredoxin 1, redox factor YP_002923014.1 95017 D 340054 CDS YP_002923015.1 238897338 7949697 complement(95464..96681) 1 NC_012751.1 COG0304; 3-oxoacyl-ACP synthase I 96681 fabB 7949697 fabB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-oxoacyl-ACP synthase I YP_002923015.1 95464 R 340054 CDS YP_002923016.1 238897339 7949698 complement(96827..97099) 1 NC_012751.1 for glutathione-dependent ribonucleotide reductase; COG0695; glutaredoxin 1 redox coenzyme 97099 grxA 7949698 grxA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutaredoxin 1 redox coenzyme YP_002923016.1 96827 R 340054 CDS YP_002923017.1 238897340 7949699 complement(97158..98300) 1 NC_012751.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 98300 dapE 7949699 dapE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinyl-diaminopimelate desuccinylase YP_002923017.1 97158 R 340054 CDS YP_002923018.1 238897341 7949700 complement(98297..98653) 1 NC_012751.1 COG1393; arsenate reductase ArsC 98653 7949700 HDEF_0095 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arsenate reductase ArsC YP_002923018.1 98297 R 340054 CDS YP_002923019.1 238897342 7949701 98695..99177 1 NC_012751.1 chorismate mutase type II 99177 7949701 HDEF_0096 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chorismate mutase type II YP_002923019.1 98695 D 340054 CDS YP_002923020.1 238897343 7949702 complement(99216..99833) 1 NC_012751.1 COG0218; GTP-binding protein 99833 engB 7949702 engB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP-binding protein YP_002923020.1 99216 R 340054 CDS YP_002923021.1 238897344 7949703 complement(100201..100326) 1 NC_012751.1 hypothetical protein 100326 7949703 HDEF_0099 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923021.1 100201 R 340054 CDS YP_002923022.1 238897345 7949705 100255..100350 1 NC_012751.1 hypothetical protein 100350 7949705 HDEF_0098 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923022.1 100255 D 340054 CDS YP_002923023.1 238897346 7949704 complement(100579..101769) 1 NC_012751.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 101769 aspC_1 7949704 aspC_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aromatic amino acid aminotransferase YP_002923023.1 100579 R 340054 CDS YP_002923024.1 238897347 7949706 102123..102473 1 NC_012751.1 COG0537; inhibitor of protein kinase C 102473 hinT 7949706 hinT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inhibitor of protein kinase C YP_002923024.1 102123 D 340054 CDS YP_002923025.1 238897348 7949707 102482..103078 1 NC_012751.1 COG3417; lipoprotein 103078 7949707 HDEF_0102 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein YP_002923025.1 102482 D 340054 CDS YP_002923026.1 238897349 7949708 complement(103075..106803) 1 NC_012751.1 COG1643; helicase, ATP-dependent 106803 hrpA 7949708 hrpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) helicase, ATP-dependent YP_002923026.1 103075 R 340054 CDS YP_002923027.1 238897350 7949710 complement(107334..107990) 1 NC_012751.1 COG0108; 3,4 dihydroxy-2-butanone-4-phosphate synthase 107990 ribB 7949710 ribB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3,4 dihydroxy-2-butanone-4-phosphate synthase YP_002923027.1 107334 R 340054 CDS YP_002923028.1 238897351 7949711 complement(108191..109966) 1 NC_012751.1 weakly similar to Wolbachia metallopeptidase; hypothetical protein 109966 7949711 HDEF_0106 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923028.1 108191 R 340054 CDS YP_002923029.1 238897352 7949712 110088..111245 1 NC_012751.1 COG0505; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit 111245 carA 7949712 carA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carbamoyl phosphate synthetase, glutamine amidotransferase small subunit YP_002923029.1 110088 D 340054 CDS YP_002923030.1 238897353 7949713 111261..114485 1 NC_012751.1 COG0458; carbamoyl phosphate synthase, large subunit 114485 carB 7949713 carB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carbamoyl phosphate synthase, large subunit YP_002923030.1 111261 D 340054 CDS YP_002923031.1 238897354 7949715 114975..115229 1 NC_012751.1 COG4115; addiction module toxin 115229 7949715 HDEF_0110 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002923031.1 114975 D 340054 CDS YP_002923032.1 238897355 7949716 complement(115237..115359) 1 NC_012751.1 hypothetical protein 115359 7949716 HDEF_0111 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923032.1 115237 R 340054 CDS YP_002923033.1 238897356 7949717 115495..116220 1 NC_012751.1 hypothetical protein 116220 7949717 HDEF_0112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923033.1 115495 D 340054 CDS YP_002923034.1 238897357 7949718 complement(116621..116950) 1 NC_012751.1 COG0023; translation initiation factor 116950 yciH 7949718 yciH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) translation initiation factor YP_002923034.1 116621 R 340054 CDS YP_002923035.1 238897358 7949719 complement(116957..117691) 1 NC_012751.1 COG0284; orotidine-5'-phosphate decarboxylase 117691 pyrF 7949719 pyrF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) orotidine-5'-phosphate decarboxylase YP_002923035.1 116957 R 340054 CDS YP_002923036.1 238897359 7949720 complement(117769..118947) 1 NC_012751.1 COG2956; hypothetical protein 118947 7949720 HDEF_0115 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923036.1 117769 R 340054 CDS YP_002923037.1 238897360 7949721 complement(118948..119265) 1 NC_012751.1 COG3771; hypothetical protein 119265 7949721 HDEF_0116 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923037.1 118948 R 340054 CDS YP_002923038.1 238897361 7949722 complement(119315..120052) 1 NC_012751.1 COG0671; phosphatidylglycerophosphatase B 120052 pgpB 7949722 pgpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylglycerophosphatase B YP_002923038.1 119315 R 340054 CDS YP_002923039.1 238897362 7949723 120206..120796 1 NC_012751.1 COG0807; GTP cyclohydrolase II 120796 ribA 7949723 ribA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP cyclohydrolase II YP_002923039.1 120206 D 340054 CDS YP_002923040.1 238897363 7949724 120888..121910 1 NC_012751.1 COG0861; integral membrane protein, tellurite resistance TerC family 121910 7949724 HDEF_0119 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integral membrane protein, tellurite resistance TerC family YP_002923040.1 120888 D 340054 CDS YP_002923041.1 238897364 7949725 complement(123065..123574) 1 NC_012751.1 COG2077; thiol peroxidase 123574 tpx 7949725 tpx Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiol peroxidase YP_002923041.1 123065 R 340054 CDS YP_002923042.1 238897365 7949726 complement(123840..127295) 1 NC_012751.1 COG1197; transcription-repair ATP-dependent coupling factor 127295 mfd 7949726 mfd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcription-repair ATP-dependent coupling factor YP_002923042.1 123840 R 340054 CDS YP_002923043.1 238897366 7949727 127457..128659 1 NC_012751.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 128659 lolC 7949727 lolC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane-specific lipoprotein transporter subunit LolC YP_002923043.1 127457 D 340054 CDS YP_002923044.1 238897367 7949728 128652..129362 1 NC_012751.1 COG1136; transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) 129362 lolD 7949728 lolD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) YP_002923044.1 128652 D 340054 CDS YP_002923045.1 238897368 7949729 129365..130618 1 NC_012751.1 COG4591; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) 130618 lolE 7949729 lolE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein of outer membrane lipoproteins (ABC superfamily, membrane) YP_002923045.1 129365 D 340054 CDS YP_002923046.1 238897369 7949730 complement(130779..131741) 1 NC_012751.1 COG1886; type III secretion system protein 131741 ssaQ 7949730 ssaQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system protein YP_002923046.1 130779 R 340054 CDS YP_002923047.1 238897370 7949731 complement(131803..132201) 1 NC_012751.1 hypothetical protein 132201 7949731 HDEF_0126 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923047.1 131803 R 340054 CDS YP_002923048.1 238897371 7949732 complement(132182..132565) 1 NC_012751.1 weak similarity and syntenic to ssaO from SPI-2; type III secretion system apparatus protein 132565 ssaO 7949732 ssaO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923048.1 132182 R 340054 CDS YP_002923049.1 238897372 7949733 complement(132562..133902) 1 NC_012751.1 COG1157; type III secretion system ATPase 133902 ssaN 7949733 ssaN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system ATPase YP_002923049.1 132562 R 340054 CDS YP_002923050.1 238897373 7949734 complement(133889..135937) 1 NC_012751.1 with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV 135937 ssaV 7949734 ssaV Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) secretion system apparatus protein SsaV YP_002923050.1 133889 R 340054 CDS YP_002923051.1 238897374 7949735 complement(135928..136299) 1 NC_012751.1 type III secretion system apparatus protein 136299 ssaM 7949735 ssaM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923051.1 135928 R 340054 CDS YP_002923052.1 238897375 7949736 complement(136310..137302) 1 NC_012751.1 type III secretion system apparatus protein 137302 ssaL 7949736 ssaL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923052.1 136310 R 340054 CDS YP_002923053.1 238897376 7949737 complement(137299..137937) 1 NC_012751.1 type III secretion system apparatus protein 137937 ssaK 7949737 ssaK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923053.1 137299 R 340054 CDS YP_002923054.1 238897377 7949738 complement(137934..138563) 1 NC_012751.1 hypothetical protein 138563 7949738 HDEF_0133 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923054.1 137934 R 340054 CDS YP_002923055.1 238897378 7949739 complement(138560..139309) 1 NC_012751.1 COG4669; needle complex inner membrane lipoprotein 139309 ssaJ 7949739 ssaJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) needle complex inner membrane lipoprotein YP_002923055.1 138560 R 340054 CDS YP_002923056.1 238897379 7949740 complement(139306..139560) 1 NC_012751.1 type III secretion system apparatus protein 139560 ssaI 7949740 ssaI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923056.1 139306 R 340054 CDS YP_002923057.1 238897380 7949741 complement(139611..139871) 1 NC_012751.1 type III secretion system apparatus protein 139871 ssaH 7949741 ssaH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923057.1 139611 R 340054 CDS YP_002923058.1 238897381 7949742 complement(139868..140083) 1 NC_012751.1 type III secretion system apparatus protein 140083 ssaG 7949742 ssaG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002923058.1 139868 R 340054 CDS YP_002923059.1 238897382 7949743 complement(140099..140797) 1 NC_012751.1 COG2207; AraC family transcriptional regulator 140797 7949743 HDEF_0138 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) AraC family transcriptional regulator YP_002923059.1 140099 R 340054 CDS YP_002923060.1 238897383 7949744 141173..143374 1 NC_012751.1 hypothetical protein 143374 7949744 HDEF_0139 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923060.1 141173 D 340054 CDS YP_002923061.1 238897384 7949745 complement(143618..143893) 1 NC_012751.1 hypothetical protein 143893 7949745 HDEF_0140 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923061.1 143618 R 340054 CDS YP_002923062.1 238897385 7949746 complement(144048..145004) 1 NC_012751.1 weak similarity and syntenic to sseD from SPI-2; type III secretion translocon protein 145004 sseD 7949746 sseD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion translocon protein YP_002923062.1 144048 R 340054 CDS YP_002923063.1 238897386 7949747 complement(145050..146849) 1 NC_012751.1 type III secretion translocon protein 146849 sseC 7949747 sseC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion translocon protein YP_002923063.1 145050 R 340054 CDS YP_002923064.1 238897387 7949748 complement(146966..147064) 1 NC_012751.1 hypothetical protein 147064 7949748 HDEF_0143 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923064.1 146966 R 340054 CDS YP_002923065.1 238897388 7949749 complement(147129..148391) 1 NC_012751.1 weak similarity and syntenic to sseB from SPI-2; type III secretion translocon protein 148391 sseB 7949749 sseB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion translocon protein YP_002923065.1 147129 R 340054 CDS YP_002923066.1 238897389 7949750 complement(148535..148789) 1 NC_012751.1 weak similarity and syntenic to ssaE from SPI-2; type III secretion system effector 148789 ssaE 7949750 ssaE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system effector YP_002923066.1 148535 R 340054 CDS YP_002923067.1 238897390 7949751 complement(148820..150058) 1 NC_012751.1 type III secretion apparatus protein 150058 ssaD 7949751 ssaD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion apparatus protein YP_002923067.1 148820 R 340054 CDS YP_002923068.1 238897391 7949752 complement(150062..151552) 1 NC_012751.1 COG1450; type III outer membrane secretin precursor 151552 ssaC 7949752 ssaC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III outer membrane secretin precursor YP_002923068.1 150062 R 340054 CDS YP_002923069.1 238897392 7949753 complement(151692..152078) 1 NC_012751.1 weak similarity and syntenic to ssaB (spiC) from SPI-2; type III secreted effector protein 152078 ssaB 7949753 ssaB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secreted effector protein YP_002923069.1 151692 R 340054 CDS YP_002923070.1 238897393 7949754 152252..154990 1 NC_012751.1 COG0642; two-component sensor/regulator 154990 7949754 HDEF_0149 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) two-component sensor/regulator YP_002923070.1 152252 D 340054 CDS YP_002923071.1 238897394 7949755 155062..155694 1 NC_012751.1 COG2197; LuxR/UhpA family two-component regulatory system regulator 155694 7949755 HDEF_0150 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) LuxR/UhpA family two-component regulatory system regulator YP_002923071.1 155062 D 340054 CDS YP_002923072.1 238897395 7949756 155852..156661 1 NC_012751.1 COG0024; methionine aminopeptidase 156661 map 7949756 map Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methionine aminopeptidase YP_002923072.1 155852 D 340054 CDS YP_002923073.1 238897396 7949757 156713..157558 1 NC_012751.1 COG2171; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 157558 dapD 7949757 dapD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_002923073.1 156713 D 340054 CDS YP_002923074.1 238897397 7949758 157534..158937 1 NC_012751.1 COG1611; lysine decarboxylase family protein 158937 7949758 HDEF_0153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lysine decarboxylase family protein YP_002923074.1 157534 D 340054 CDS YP_002923075.1 238897398 7949759 159009..159110 1 NC_012751.1 hypothetical protein 159110 7949759 HDEF_0154 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923075.1 159009 D 340054 CDS YP_002923076.1 238897399 7949760 159830..161566 1 NC_012751.1 COG0608; ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent 161566 recJ 7949760 recJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent YP_002923076.1 159830 D 340054 CDS YP_002923077.1 238897400 7949761 complement(161639..162103) 1 NC_012751.1 COG4811; hypothetical protein 162103 7949761 HDEF_0156 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923077.1 161639 R 340054 CDS YP_002923078.1 238897401 7949762 complement(162190..163083) 1 NC_012751.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 163083 manZ 7949762 manZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS system mannose-specific transporter subunit IID YP_002923078.1 162190 R 340054 CDS YP_002923079.1 238897402 7949763 complement(163098..163901) 1 NC_012751.1 COG3715; PTS family enzyme IIC, mannose-specific 163901 manY 7949763 manY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS family enzyme IIC, mannose-specific YP_002923079.1 163098 R 340054 CDS YP_002923080.1 238897403 7949764 complement(163953..164963) 1 NC_012751.1 COG3444; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific 164963 manX 7949764 manX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific YP_002923080.1 163953 R 340054 CDS YP_002923081.1 238897404 7949765 complement(165339..166580) 1 NC_012751.1 COG0112; serine hydroxymethyltransferase 166580 glyA 7949765 glyA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine hydroxymethyltransferase YP_002923081.1 165339 R 340054 CDS YP_002923082.1 238897405 7949766 complement(166963..167115) 1 NC_012751.1 hypothetical protein 167115 7949766 HDEF_0161 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923082.1 166963 R 340054 CDS YP_002923083.1 238897406 7949767 complement(167168..167362) 1 NC_012751.1 hypothetical protein 167362 7949767 HDEF_0163 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923083.1 167168 R 340054 CDS YP_002923084.1 238897407 7949769 167223..167933 1 NC_012751.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 167933 tolQ 7949769 tolQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) colicin uptake protein TolQ YP_002923084.1 167223 D 340054 CDS YP_002923085.1 238897408 7949768 167968..168390 1 NC_012751.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 168390 tolR 7949768 tolR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) colicin uptake protein TolR YP_002923085.1 167968 D 340054 CDS YP_002923086.1 238897409 7949770 168434..169381 1 NC_012751.1 required for outer membrane integrity, uptake of group A colicins, role in translocation of filamenous phage DNA to cytoplasm, role in surface expression of O-antigen; tol protein A 169381 tolA 7949770 tolA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tol protein A YP_002923086.1 168434 D 340054 CDS YP_002923087.1 238897410 7949771 169453..170742 1 NC_012751.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 170742 tolB 7949771 tolB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) translocation protein TolB YP_002923087.1 169453 D 340054 CDS YP_002923088.1 238897411 7949772 170782..171303 1 NC_012751.1 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; COG2885; pal protein 171303 pal 7949772 pal Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pal protein YP_002923088.1 170782 D 340054 CDS YP_002923089.1 238897412 7949773 171321..172094 1 NC_012751.1 COG1729; protein prenylyltransferase 172094 ybgF 7949773 ybgF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein prenylyltransferase YP_002923089.1 171321 D 340054 CDS YP_002923090.1 238897413 7949774 172623..173762 1 NC_012751.1 similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 173762 7949774 HDEF_0169 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923090.1 172623 D 340054 CDS YP_002923091.1 238897414 7949775 173848..175158 1 NC_012751.1 cytosine transport protein (NCS1 family) 175158 codB_1 7949775 codB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytosine transport protein (NCS1 family) YP_002923091.1 173848 D 340054 CDS YP_002923092.1 238897415 7949776 175170..176252 1 NC_012751.1 COG3535; hypothetical protein 176252 7949776 HDEF_0171 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923092.1 175170 D 340054 CDS YP_002923093.1 238897416 7949777 176252..177829 1 NC_012751.1 COG0145; hydantoinase 177829 7949777 HDEF_0172 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hydantoinase YP_002923093.1 176252 D 340054 CDS YP_002923094.1 238897417 7949778 complement(177878..178540) 1 NC_012751.1 transcriptional regulator 178540 7949778 HDEF_0173 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923094.1 177878 R 340054 CDS YP_002923095.1 238897418 7949779 complement(179602..179736) 1 NC_012751.1 hypothetical protein 179736 7949779 HDEF_0174 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923095.1 179602 R 340054 CDS YP_002923096.1 238897419 7949780 179745..179843 1 NC_012751.1 hypothetical protein 179843 7949780 HDEF_0175 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923096.1 179745 D 340054 CDS YP_002923097.1 238897420 7949781 complement(179871..181247) 1 NC_012751.1 colanic acid synthesis; COG1109; phosphomannomutase 181247 cpsG 7949781 cpsG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphomannomutase YP_002923097.1 179871 R 340054 CDS YP_002923098.1 238897421 7949782 181439..181660 1 NC_012751.1 hypothetical protein 181660 7949782 HDEF_0177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923098.1 181439 D 340054 CDS YP_002923099.1 238897422 7949783 complement(181710..182141) 1 NC_012751.1 hypothetical protein 182141 7949783 HDEF_0178 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923099.1 181710 R 340054 CDS YP_002923100.1 238897423 7949784 complement(182219..183181) 1 NC_012751.1 COG0451; UDP-glucose 4-epimerase 183181 galE_1 7949784 galE_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-glucose 4-epimerase YP_002923100.1 182219 R 340054 CDS YP_002923101.1 238897424 7949785 183450..183569 1 NC_012751.1 weakly similar to Firmicutes hypothetical gene; hypothetical protein 183569 7949785 HDEF_0180 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923101.1 183450 D 340054 CDS YP_002923102.1 238897425 7949786 complement(183842..185269) 1 NC_012751.1 O-antigen conversion protein 185269 7949786 HDEF_0181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) O-antigen conversion protein YP_002923102.1 183842 R 340054 CDS YP_002923103.1 238897426 7949790 complement(188314..189231) 1 NC_012751.1 fusion of GMHP sugar kinase and isomerase 189231 7949790 HDEF_0185 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fusion of GMHP sugar kinase and isomerase YP_002923103.1 188314 R 340054 CDS YP_002923104.1 238897427 7949792 complement(189887..191788) 1 NC_012751.1 hypothetical protein 191788 7949792 HDEF_0187 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923104.1 189887 R 340054 CDS YP_002923105.1 238897428 7949793 complement(191820..192620) 1 NC_012751.1 glycosyltransferase group 2 192620 7949793 HDEF_0188 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyltransferase group 2 YP_002923105.1 191820 R 340054 CDS YP_002923106.1 238897429 7949794 complement(192651..193637) 1 NC_012751.1 COG0451; dTDP-glucose 4,6-dehydratase 193637 7949794 HDEF_0189 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dTDP-glucose 4,6-dehydratase YP_002923106.1 192651 R 340054 CDS YP_002923107.1 238897430 7949795 complement(193809..194855) 1 NC_012751.1 COG1087; UDP-galactose 4-epimerase 194855 galE_2 7949795 galE_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-galactose 4-epimerase YP_002923107.1 193809 R 340054 CDS YP_002923108.1 238897431 7949796 complement(195352..196530) 1 NC_012751.1 hypothetical protein 196530 7949796 HDEF_0191 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923108.1 195352 R 340054 CDS YP_002923109.1 238897432 7949797 complement(196688..197350) 1 NC_012751.1 hypothetical protein 197350 7949797 HDEF_0192 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923109.1 196688 R 340054 CDS YP_002923110.1 238897433 7949798 complement(197742..198764) 1 NC_012751.1 hypothetical protein 198764 7949798 HDEF_0193 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923110.1 197742 R 340054 CDS YP_002923111.1 238897434 7949799 complement(198765..199238) 1 NC_012751.1 COG0615; glycerol-3-phosphate cytidylyltransferase 199238 7949799 HDEF_0194 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycerol-3-phosphate cytidylyltransferase YP_002923111.1 198765 R 340054 CDS YP_002923112.1 238897435 7949800 complement(199235..200308) 1 NC_012751.1 hypothetical protein 200308 7949800 HDEF_0195 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923112.1 199235 R 340054 CDS YP_002923113.1 238897436 7949801 complement(200298..201395) 1 NC_012751.1 glycosyltransferase group 1 201395 7949801 HDEF_0196 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyltransferase group 1 YP_002923113.1 200298 R 340054 CDS YP_002923114.1 238897437 7949802 complement(201399..202553) 1 NC_012751.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 202553 7949802 HDEF_0197 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_002923114.1 201399 R 340054 CDS YP_002923115.1 238897438 7949803 complement(202609..202803) 1 NC_012751.1 C terminal truncation; COG3475; LicD family protein 202803 7949803 HDEF_0198 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) LicD family protein YP_002923115.1 202609 R 340054 CDS YP_002923116.1 238897439 7949805 complement(203703..204452) 1 NC_012751.1 hypothetical protein 204452 7949805 HDEF_0200 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923116.1 203703 R 340054 CDS YP_002923117.1 238897440 7949806 complement(204471..205562) 1 NC_012751.1 aminotransferase class V 205562 7949806 HDEF_0201 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminotransferase class V YP_002923117.1 204471 R 340054 CDS YP_002923118.1 238897441 7949807 complement(205562..206749) 1 NC_012751.1 thiamine pyrophosphate enzyme 206749 7949807 HDEF_0202 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiamine pyrophosphate enzyme YP_002923118.1 205562 R 340054 CDS YP_002923119.1 238897442 7949808 complement(206746..208467) 1 NC_012751.1 phosphoenolpyruvate phosphomutase 208467 7949808 HDEF_0203 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoenolpyruvate phosphomutase YP_002923119.1 206746 R 340054 CDS YP_002923120.1 238897443 7949809 complement(208467..209231) 1 NC_012751.1 sugar nucleotidyltransferase-like protein 209231 7949809 HDEF_0204 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sugar nucleotidyltransferase-like protein YP_002923120.1 208467 R 340054 CDS YP_002923121.1 238897444 7949810 complement(209277..210782) 1 NC_012751.1 virulence factor mviN-like protein 210782 7949810 HDEF_0205 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) virulence factor mviN-like protein YP_002923121.1 209277 R 340054 CDS YP_002923122.1 238897445 7949811 complement(210783..210944) 1 NC_012751.1 hypothetical protein 210944 7949811 HDEF_0206 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923122.1 210783 R 340054 CDS YP_002923123.1 238897446 7949812 complement(210977..211936) 1 NC_012751.1 COG0276; ferrochelatase 211936 hemH 7949812 hemH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ferrochelatase YP_002923123.1 210977 R 340054 CDS YP_002923124.1 238897447 7949813 complement(212091..213056) 1 NC_012751.1 COG0825; acetylCoA carboxylase, carboxytransferase alpha colanic acid synthesis 213056 accA 7949813 accA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetylCoA carboxylase, carboxytransferase alpha colanic acid synthesis YP_002923124.1 212091 R 340054 CDS YP_002923125.1 238897448 7949814 complement(213069..216551) 1 NC_012751.1 COG0587; DNA polymerase III, alpha subunit 216551 dnaE 7949814 dnaE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, alpha subunit YP_002923125.1 213069 R 340054 CDS YP_002923126.1 238897449 7949815 complement(216583..217254) 1 NC_012751.1 COG0602; hypothetical protein 217254 7949815 HDEF_0210 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923126.1 216583 R 340054 CDS YP_002923127.1 238897450 7949816 217831..218244 1 NC_012751.1 transcriptional regulator of cryptic genes for curli formation and fibronectin binding; involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 218244 crl 7949816 crl Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding transcriptional regulator Crl YP_002923127.1 217831 D 340054 CDS YP_002923128.1 238897451 7949817 complement(218398..220014) 1 NC_012751.1 COG0171; NAD synthetase 220014 nadE 7949817 nadE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NAD synthetase YP_002923128.1 218398 R 340054 CDS YP_002923129.1 238897452 7949818 complement(220115..221488) 1 NC_012751.1 COG0037; ATPase of the PP-loop superfamily 221488 7949818 HDEF_0213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATPase of the PP-loop superfamily YP_002923129.1 220115 R 340054 CDS YP_002923130.1 238897453 7949819 complement(221736..222491) 1 NC_012751.1 COG3137; hypothetical protein 222491 7949819 HDEF_0214 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923130.1 221736 R 340054 CDS YP_002923131.1 238897454 7949820 complement(222508..222657) 1 NC_012751.1 hypothetical protein 222657 7949820 HDEF_0215 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923131.1 222508 R 340054 CDS YP_002923132.1 238897455 7949821 222836..222943 1 NC_012751.1 hypothetical protein 222943 7949821 HDEF_0216 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923132.1 222836 D 340054 CDS YP_002923133.1 238897456 7949822 complement(223003..224295) 1 NC_012751.1 hypothetical protein 224295 7949822 HDEF_0217 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923133.1 223003 R 340054 CDS YP_002923134.1 238897457 7949823 complement(224496..225419) 1 NC_012751.1 COG0330; inner membrane protein, SPFH/band 7 family 225419 7949823 HDEF_0218 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inner membrane protein, SPFH/band 7 family YP_002923134.1 224496 R 340054 CDS YP_002923135.1 238897458 7949824 complement(225497..228415) 1 NC_012751.1 COG0525; valine tRNA synthetase 228415 valS 7949824 valS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) valine tRNA synthetase YP_002923135.1 225497 R 340054 CDS YP_002923136.1 238897459 7949825 complement(228423..228875) 1 NC_012751.1 COG2927; DNA polymerase III, chi subunit 228875 holC 7949825 holC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, chi subunit YP_002923136.1 228423 R 340054 CDS YP_002923137.1 238897460 7949826 complement(228903..230408) 1 NC_012751.1 COG0260; aminopeptidase A, a cyteinylglycinase 230408 pepA 7949826 pepA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminopeptidase A, a cyteinylglycinase YP_002923137.1 228903 R 340054 CDS YP_002923138.1 238897461 7949827 230586..231680 1 NC_012751.1 COG0795; permease 231680 7949827 HDEF_0222 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) permease YP_002923138.1 230586 D 340054 CDS YP_002923139.1 238897462 7949828 231680..232783 1 NC_012751.1 COG0795; permease 232783 7949828 HDEF_0223 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) permease YP_002923139.1 231680 D 340054 CDS YP_002923140.1 238897463 7949829 233034..234131 1 NC_012751.1 OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 234131 ompA 7949829 ompA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protein A YP_002923140.1 233034 D 340054 CDS YP_002923141.1 238897464 7949830 complement(234305..236134) 1 NC_012751.1 COG0449; L-glutamine:D-fructose-6-phosphate aminotransferase 236134 glmS 7949830 glmS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) L-glutamine:D-fructose-6-phosphate aminotransferase YP_002923141.1 234305 R 340054 CDS YP_002923142.1 238897465 7949831 complement(236149..237516) 1 NC_012751.1 COG1207; bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) 237516 glmU 7949831 glmU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) YP_002923142.1 236149 R 340054 CDS YP_002923143.1 238897466 7949832 237705..238094 1 NC_012751.1 COG0818; diacylglycerol kinase 238094 7949832 HDEF_0227 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) diacylglycerol kinase YP_002923143.1 237705 D 340054 CDS YP_002923144.1 238897467 7949833 238112..239665 1 NC_012751.1 COG2194; sulfatase 239665 7949833 HDEF_0228 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sulfatase YP_002923144.1 238112 D 340054 CDS YP_002923145.1 238897468 7949834 complement(239768..241045) 1 NC_012751.1 COG1253; CorC/HlyC transporter 241045 7949834 HDEF_0230 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CorC/HlyC transporter YP_002923145.1 239768 R 340054 CDS YP_002923146.1 238897469 7949836 240639..241082 1 NC_012751.1 hypothetical protein 241082 7949836 HDEF_0229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923146.1 240639 D 340054 CDS YP_002923147.1 238897470 7949835 241438..242424 1 NC_012751.1 COG1663; tetraacyldisaccharide 4'-kinase 242424 lpxK 7949835 lpxK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tetraacyldisaccharide 4'-kinase YP_002923147.1 241438 D 340054 CDS YP_002923148.1 238897471 7949837 complement(242596..242832) 1 NC_012751.1 hypothetical protein 242832 7949837 HDEF_0232 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923148.1 242596 R 340054 CDS YP_002923149.1 238897472 7949838 242906..243115 1 NC_012751.1 affects expression of rpoS and uspA; COG1278; RNA chaperone, transcription antiterminator 243115 cspE_1 7949838 cspE_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA chaperone, transcription antiterminator YP_002923149.1 242906 D 340054 CDS YP_002923150.1 238897473 7949839 243389..243568 1 NC_012751.1 COG2835; hypothetical protein 243568 7949839 HDEF_0234 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923150.1 243389 D 340054 CDS YP_002923151.1 238897474 7949840 243568..244314 1 NC_012751.1 COG1212; CTP:CMP-3-deoxy-D-manno-octulosonate transferase 244314 kdsB 7949840 kdsB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CTP:CMP-3-deoxy-D-manno-octulosonate transferase YP_002923151.1 243568 D 340054 CDS YP_002923152.1 238897475 7949841 244661..246181 1 NC_012751.1 COG0606; nucleoside triphosphate hydrolase 246181 yifB 7949841 yifB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) nucleoside triphosphate hydrolase YP_002923152.1 244661 D 340054 CDS YP_002923153.1 238897476 7949842 complement(246507..246911) 1 NC_012751.1 ISHde1, transposase 246911 7949842 HDEF_0237 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923153.1 246507 R 340054 CDS YP_002923154.1 238897477 7949843 complement(246952..247329) 1 NC_012751.1 ISHde1, transposase 247329 7949843 HDEF_0238 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923154.1 246952 R 340054 CDS YP_002923155.1 238897478 7949844 complement(247380..248432) 1 NC_012751.1 cotnains P-loop with nucleoside triphosphate hydrolase domain; COG2804; general secretory pathway protein 248432 gspE 7949844 gspE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) general secretory pathway protein YP_002923155.1 247380 R 340054 CDS YP_002923156.1 238897479 7949845 complement(248429..248638) 1 NC_012751.1 hypothetical protein 248638 7949845 HDEF_0240 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923156.1 248429 R 340054 CDS YP_002923157.1 238897480 7949846 complement(248635..250698) 1 NC_012751.1 COG1450; protein exporter, transport across outer membrane (General Secretory Pathway) 250698 gspD 7949846 gspD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923157.1 248635 R 340054 CDS YP_002923158.1 238897481 7949847 complement(250767..251231) 1 NC_012751.1 weakly similar to general secretion pathway protein C; hypothetical protein 251231 7949847 HDEF_0243 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923158.1 250767 R 340054 CDS YP_002923161.1 238897482 7949848 complement(251640..251759) 1 NC_012751.1 hypothetical protein 251759 7949848 HDEF_0245 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923161.1 251640 R 340054 CDS YP_002923162.1 238897483 7949849 complement(252153..252515) 1 NC_012751.1 hypothetical protein 252515 7949849 HDEF_0246 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923162.1 252153 R 340054 CDS YP_002923163.1 238897484 7949850 252652..252765 1 NC_012751.1 hypothetical protein 252765 7949850 HDEF_0247 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923163.1 252652 D 340054 CDS YP_002923164.1 238897485 7949851 complement(252826..253446) 1 NC_012751.1 hypothetical protein 253446 7949851 HDEF_0248 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923164.1 252826 R 340054 CDS YP_002923165.1 238897486 7949852 complement(253474..253641) 1 NC_012751.1 hypothetical protein 253641 7949852 HDEF_0249 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923165.1 253474 R 340054 CDS YP_002923166.1 238897487 7949854 254505..254870 1 NC_012751.1 ISHde2, transposase 254870 7949854 HDEF_0251 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923166.1 254505 D 340054 CDS YP_002923167.1 238897488 7949855 255011..255292 1 NC_012751.1 ISHde2, transposase 255292 7949855 HDEF_0252 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923167.1 255011 D 340054 CDS YP_002923168.1 238897489 7949857 complement(255734..255997) 1 NC_012751.1 C terminal truncation; Mu-like prophage I protein 255997 7949857 HDEF_0254 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like prophage I protein YP_002923168.1 255734 R 340054 CDS YP_002923169.1 238897490 7949858 256132..256335 1 NC_012751.1 hypothetical protein 256335 7949858 HDEF_0255 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923169.1 256132 D 340054 CDS YP_002923170.1 238897491 7949859 256332..256655 1 NC_012751.1 COG2337; addiction module toxin 256655 7949859 HDEF_0256 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002923170.1 256332 D 340054 CDS YP_002923171.1 238897492 7949860 256905..257153 1 NC_012751.1 N and C terminal truncations; COG2369; Mu-like phage F protein 257153 7949860 HDEF_0257 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like phage F protein YP_002923171.1 256905 D 340054 CDS YP_002923172.1 238897493 7949861 complement(257141..257572) 1 NC_012751.1 C terminal truncation; PilV type IV pilus minor pilin subunit, shufflon protein 257572 7949861 HDEF_0258 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilV type IV pilus minor pilin subunit, shufflon protein YP_002923172.1 257141 R 340054 CDS YP_002923173.1 238897494 7949862 complement(257584..257685) 1 NC_012751.1 hypothetical protein 257685 7949862 HDEF_0259 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923173.1 257584 R 340054 CDS YP_002923174.1 238897495 7949863 257725..257979 1 NC_012751.1 COG4691; addiction module 257979 7949863 HDEF_0260 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002923174.1 257725 D 340054 CDS YP_002923175.1 238897496 7949864 257976..258419 1 NC_012751.1 COG1487; hypothetical protein 258419 7949864 HDEF_0261 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923175.1 257976 D 340054 CDS YP_002923176.1 238897497 7949865 complement(258391..258981) 1 NC_012751.1 PilS2 type IV pilus biosynthesis protein 258981 7949865 HDEF_0262 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilS2 type IV pilus biosynthesis protein YP_002923176.1 258391 R 340054 CDS YP_002923177.1 238897498 7949866 259327..261219 1 NC_012751.1 MobA relaxase/mobilization protein 261219 mobA_1 7949866 mobA_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobA relaxase/mobilization protein YP_002923177.1 259327 D 340054 CDS YP_002923178.1 238897499 7949867 261350..261691 1 NC_012751.1 COG0776; transcriptional regulator subunit alpha 261691 hupA_1 7949867 hupA_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator subunit alpha YP_002923178.1 261350 D 340054 CDS YP_002923179.1 238897500 7951939 complement(264970..265707) 1 NC_012751.1 weakly similar to Sodalis hypothetical protein; hypothetical protein 265707 7951939 HDEF_0266 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923179.1 264970 R 340054 CDS YP_002923180.1 238897501 7949870 complement(265808..266557) 1 NC_012751.1 COG0588; phosphoglyceromutase 1 266557 gpmA 7949870 gpmA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoglyceromutase 1 YP_002923180.1 265808 R 340054 CDS YP_002923181.1 238897502 7949871 complement(266658..268721) 1 NC_012751.1 COG2274; ABC transporter 268721 7949871 HDEF_0268 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter YP_002923181.1 266658 R 340054 CDS YP_002923182.1 238897503 7949872 complement(268919..269704) 1 NC_012751.1 COG0596; alpha/beta hydrolase fold protein 269704 7949872 HDEF_0269 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alpha/beta hydrolase fold protein YP_002923182.1 268919 R 340054 CDS YP_002923183.1 238897504 7949873 269773..270303 1 NC_012751.1 COG3057; negative modulator of replication initiation 270303 seqA 7949873 seqA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) negative modulator of replication initiation YP_002923183.1 269773 D 340054 CDS YP_002923184.1 238897505 7949874 270360..270812 1 NC_012751.1 COG0838; NADH dehydrogenase I chain A 270812 nuoA 7949874 nuoA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain A YP_002923184.1 270360 D 340054 CDS YP_002923185.1 238897506 7949875 270818..271498 1 NC_012751.1 COG0377; NADH dehydrogenase I chain B, binds FeS cluster N2 271498 nuoB 7949875 nuoB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain B, binds FeS cluster N2 YP_002923185.1 270818 D 340054 CDS YP_002923186.1 238897507 7949876 271506..273305 1 NC_012751.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 273305 nuoC 7949876 nuoC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_002923186.1 271506 D 340054 CDS YP_002923187.1 238897508 7949877 273308..273832 1 NC_012751.1 COG1905; NADH dehydrogenase I chain E 273832 nuoE 7949877 nuoE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain E YP_002923187.1 273308 D 340054 CDS YP_002923188.1 238897509 7949878 273829..275247 1 NC_012751.1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 275247 nuoF 7949878 nuoF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I subunit F YP_002923188.1 273829 D 340054 CDS YP_002923189.1 238897510 7949879 complement(275336..277450) 1 NC_012751.1 COG2274; ABC transporter ATP-binding protein/permease 277450 rtxB_1 7949879 rtxB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter ATP-binding protein/permease YP_002923189.1 275336 R 340054 CDS YP_002923190.1 238897511 7949880 complement(277452..278828) 1 NC_012751.1 COG0845; ABC transporter 278828 rtxD 7949880 rtxD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter YP_002923190.1 277452 R 340054 CDS YP_002923191.1 238897512 7949881 complement(278825..280957) 1 NC_012751.1 COG2274; ABC transporter ATP-binding protein/permease 280957 rtxB_2 7949881 rtxB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter ATP-binding protein/permease YP_002923191.1 278825 R 340054 CDS YP_002923192.1 238897513 7949882 281504..282805 1 NC_012751.1 COG0161; 7,8-diaminopelargonic acid synthetase, PLP-dependent 282805 bioA 7949882 bioA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7,8-diaminopelargonic acid synthetase, PLP-dependent YP_002923192.1 281504 D 340054 CDS YP_002923193.1 238897514 7949883 complement(282897..285041) 1 NC_012751.1 type V secretory pathway, adhesin 285041 7949883 HDEF_0280 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type V secretory pathway, adhesin YP_002923193.1 282897 R 340054 CDS YP_002923194.1 238897515 7949884 complement(285252..285821) 1 NC_012751.1 hypothetical protein 285821 7949884 HDEF_0281 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923194.1 285252 R 340054 CDS YP_002923195.1 238897516 7949885 285885..286025 1 NC_012751.1 hypothetical protein 286025 7949885 HDEF_0282 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923195.1 285885 D 340054 CDS YP_002923196.1 238897517 7949886 complement(286148..286876) 1 NC_012751.1 weakly similar to Providencia hypothetical protein; hypothetical protein 286876 7949886 HDEF_0283 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923196.1 286148 R 340054 CDS YP_002923197.1 238897518 7949887 complement(286989..287393) 1 NC_012751.1 ISHde1, transposase 287393 7949887 HDEF_0284 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923197.1 286989 R 340054 CDS YP_002923198.1 238897519 7949888 complement(287434..287811) 1 NC_012751.1 ISHde1, transposase 287811 7949888 HDEF_0285 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923198.1 287434 R 340054 CDS YP_002923199.1 238897520 7949890 complement(290769..291296) 1 NC_012751.1 hypothetical protein 291296 7949890 HDEF_0287 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923199.1 290769 R 340054 CDS YP_002923200.1 238897521 7949891 complement(291384..292040) 1 NC_012751.1 hypothetical protein 292040 7949891 HDEF_0288 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923200.1 291384 R 340054 CDS YP_002923201.1 238897522 7949892 292403..293290 1 NC_012751.1 COG0697; integral membrane protein 293290 7949892 HDEF_0289 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integral membrane protein YP_002923201.1 292403 D 340054 CDS YP_002923202.1 238897523 7949893 293367..294473 1 NC_012751.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 294473 serC 7949893 serC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoserine aminotransferase YP_002923202.1 293367 D 340054 CDS YP_002923203.1 238897524 7949895 295959..297203 1 NC_012751.1 COG0513; ATP-dependent RNA helicase 297203 rhlE 7949895 rhlE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent RNA helicase YP_002923203.1 295959 D 340054 CDS YP_002923204.1 238897525 7949896 complement(297289..298287) 1 NC_012751.1 hypothetical protein 298287 7949896 HDEF_0293 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923204.1 297289 R 340054 CDS YP_002923205.1 238897526 7949897 299274..299798 1 NC_012751.1 COG0041; N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase 299798 purE 7949897 purE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase YP_002923205.1 299274 D 340054 CDS YP_002923206.1 238897527 7949898 299795..300895 1 NC_012751.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 300895 purK 7949898 purK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylaminoimidazole carboxylase ATPase subunit YP_002923206.1 299795 D 340054 CDS YP_002923207.1 238897528 7949899 301000..301620 1 NC_012751.1 COG0237; dephospho-CoA kinase 301620 coaE 7949899 coaE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dephospho-CoA kinase YP_002923207.1 301000 D 340054 CDS YP_002923208.1 238897529 7951940 302237..303919 1 NC_012751.1 reverse transcriptase 303919 7951940 HDEF_0297 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923208.1 302237 D 340054 CDS YP_002923209.1 238897530 7949901 304805..305467 1 NC_012751.1 weakly similar to Yersinia hypothetical protein; hypothetical protein 305467 7949901 HDEF_0298 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923209.1 304805 D 340054 CDS YP_002923210.1 238897531 7949902 complement(305702..306259) 1 NC_012751.1 COG3108; hypothetical protein 306259 7949902 HDEF_0299 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923210.1 305702 R 340054 CDS YP_002923211.1 238897532 7949903 complement(306320..307063) 1 NC_012751.1 COG0566; rRNA methylase 307063 7949903 HDEF_0300 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) rRNA methylase YP_002923211.1 306320 R 340054 CDS YP_002923212.1 238897533 7949904 complement(307056..309404) 1 NC_012751.1 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R 309404 rnr 7949904 rnr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exoribonuclease R YP_002923212.1 307056 R 340054 CDS YP_002923213.1 238897534 7949905 complement(309482..310792) 1 NC_012751.1 COG0104; adenylosuccinate synthetase 310792 purA 7949905 purA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenylosuccinate synthetase YP_002923213.1 309482 R 340054 CDS YP_002923214.1 238897535 7949906 311050..311673 1 NC_012751.1 COG3103; signal transduction protein 311673 7949906 HDEF_0303 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) signal transduction protein YP_002923214.1 311050 D 340054 CDS YP_002923215.1 238897536 7949907 312259..314181 1 NC_012751.1 hypothetical protein 314181 7949907 HDEF_0304 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923215.1 312259 D 340054 CDS YP_002923216.1 238897537 7949908 complement(314349..315539) 1 NC_012751.1 COG0814; tyrosine-specific transport protein (HAAAP family) 315539 tyrP 7949908 tyrP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tyrosine-specific transport protein (HAAAP family) YP_002923216.1 314349 R 340054 CDS YP_002923217.1 238897538 7949909 complement(315578..316708) 1 NC_012751.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 316708 nrdB 7949909 nrdB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribonucleotide-diphosphate reductase subunit beta YP_002923217.1 315578 R 340054 CDS YP_002923218.1 238897539 7949910 complement(316744..319032) 1 NC_012751.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 319032 nrdA 7949910 nrdA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribonucleotide-diphosphate reductase subunit alpha YP_002923218.1 316744 R 340054 CDS YP_002923219.1 238897540 7949911 complement(319341..320693) 1 NC_012751.1 tight adherance operon protein G 320693 tadG 7949911 tadG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein G YP_002923219.1 319341 R 340054 CDS YP_002923220.1 238897541 7949912 complement(320727..321374) 1 NC_012751.1 hypothetical protein 321374 7949912 HDEF_0309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923220.1 320727 R 340054 CDS YP_002923221.1 238897542 7949913 complement(321349..321813) 1 NC_012751.1 tight adherance operon protein E 321813 tadE 7949913 tadE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein E YP_002923221.1 321349 R 340054 CDS YP_002923222.1 238897543 7949914 complement(321810..322574) 1 NC_012751.1 COG5010; tight adherance operon protein D 322574 tadD 7949914 tadD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein D YP_002923222.1 321810 R 340054 CDS YP_002923223.1 238897544 7949915 complement(322571..323398) 1 NC_012751.1 COG2064; tight adherance operon protein C 323398 tadC 7949915 tadC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein C YP_002923223.1 322571 R 340054 CDS YP_002923224.1 238897545 7949916 complement(323400..324302) 1 NC_012751.1 COG4965; tight adherance operon protein B 324302 tadB 7949916 tadB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein B YP_002923224.1 323400 R 340054 CDS YP_002923225.1 238897546 7949918 complement(325588..326721) 1 NC_012751.1 COG4963; hypothetical protein 326721 7949918 HDEF_0315 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923225.1 325588 R 340054 CDS YP_002923226.1 238897547 7949919 complement(326726..327178) 1 NC_012751.1 hypothetical protein 327178 7949919 HDEF_0316 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923226.1 326726 R 340054 CDS YP_002923227.1 238897548 7949920 complement(327175..328554) 1 NC_012751.1 COG4964; tight adherance operon protein 328554 rcpA 7949920 rcpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tight adherance operon protein YP_002923227.1 327175 R 340054 CDS YP_002923228.1 238897549 7949921 complement(328560..329387) 1 NC_012751.1 hypothetical protein 329387 7949921 HDEF_0318 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923228.1 328560 R 340054 CDS YP_002923229.1 238897550 7949922 complement(329440..329646) 1 NC_012751.1 N terminal truncation; COG4960; type IV prepilin peptidase family protein 329646 7949922 HDEF_0319 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV prepilin peptidase family protein YP_002923229.1 329440 R 340054 CDS YP_002923230.1 238897551 7949923 complement(330395..330508) 1 NC_012751.1 hypothetical protein 330508 7949923 HDEF_0320 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923230.1 330395 R 340054 CDS YP_002923231.1 238897552 7949924 330774..332153 1 NC_012751.1 trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 332153 tolC 7949924 tolC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane channel protein YP_002923231.1 330774 D 340054 CDS YP_002923232.1 238897553 7949925 complement(332270..332782) 1 NC_012751.1 COG2190; PTS family enzyme IIA component 332782 crr 7949925 crr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS family enzyme IIA component YP_002923232.1 332270 R 340054 CDS YP_002923233.1 238897554 7949926 complement(332919..334643) 1 NC_012751.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 334643 ptsI 7949926 ptsI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoenolpyruvate-protein phosphotransferase YP_002923233.1 332919 R 340054 CDS YP_002923234.1 238897555 7949927 complement(334695..334952) 1 NC_012751.1 COG1925; PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase 334952 ptsH 7949927 ptsH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase YP_002923234.1 334695 R 340054 CDS YP_002923235.1 238897556 7949928 complement(335124..336920) 1 NC_012751.1 COG0513; cold-shock DeaD box ATP-dependent RNA helicase 336920 deaD 7949928 deaD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cold-shock DeaD box ATP-dependent RNA helicase YP_002923235.1 335124 R 340054 CDS YP_002923236.1 238897557 7949929 complement(337058..337168) 1 NC_012751.1 hypothetical protein 337168 7949929 HDEF_0326 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923236.1 337058 R 340054 CDS YP_002923237.1 238897558 7949930 complement(337424..339574) 1 NC_012751.1 COG1185; polynucleotide phosphorylase/polyadenylase 339574 pnp 7949930 pnp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polynucleotide phosphorylase/polyadenylase YP_002923237.1 337424 R 340054 CDS YP_002923238.1 238897559 7949931 complement(339732..340001) 1 NC_012751.1 COG0184; 30S ribosomal protein S15 340001 rpsO 7949931 rpsO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S15 YP_002923238.1 339732 R 340054 CDS YP_002923239.1 238897560 7949932 complement(340251..341192) 1 NC_012751.1 COG0130; tRNA pseudouridine 5S synthase 341192 truB 7949932 truB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA pseudouridine 5S synthase YP_002923239.1 340251 R 340054 CDS YP_002923240.1 238897561 7949933 complement(341182..341595) 1 NC_012751.1 role in processing of 16S rRNA; COG0858; 30S ribosome-binding factor 341595 rbfA 7949933 rbfA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosome-binding factor YP_002923240.1 341182 R 340054 CDS YP_002923241.1 238897562 7949934 complement(341666..344314) 1 NC_012751.1 COG0532; protein chain initiation factor IF-2 344314 infB 7949934 infB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein chain initiation factor IF-2 YP_002923241.1 341666 R 340054 CDS YP_002923242.1 238897563 7949935 complement(344424..345908) 1 NC_012751.1 COG0195; transcription pausing; L factor 345908 nusA 7949935 nusA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcription pausing; L factor YP_002923242.1 344424 R 340054 CDS YP_002923243.1 238897564 7949936 complement(345932..346399) 1 NC_012751.1 COG0779; hypothetical protein 346399 7949936 HDEF_0333 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923243.1 345932 R 340054 CDS YP_002923244.1 238897565 7949937 complement(346482..346586) 1 NC_012751.1 hypothetical protein 346586 7949937 HDEF_0334 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923244.1 346482 R 340054 CDS YP_002923245.1 238897566 7949940 complement(346959..347288) 1 NC_012751.1 COG1314; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) 347288 secG 7949940 secG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) YP_002923245.1 346959 R 340054 CDS YP_002923246.1 238897567 7949941 347628..348719 1 NC_012751.1 COG0012; translation-associated GTPase 348719 7949941 HDEF_0338 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) translation-associated GTPase YP_002923246.1 347628 D 340054 CDS YP_002923247.1 238897568 7949942 complement(348769..350151) 1 NC_012751.1 COG0147; aminodeoxychorismate synthase subunit I, component of p-aminobenzoate synthase multienzyme complex 350151 pabB 7949942 pabB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminodeoxychorismate synthase subunit I, component of p-aminobenzoate synthase multienzyme complex YP_002923247.1 348769 R 340054 CDS YP_002923248.1 238897569 7949943 complement(350203..351045) 1 NC_012751.1 COG1989; PilD type IV pilus leader peptidase 351045 pilD 7949943 pilD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilD type IV pilus leader peptidase YP_002923248.1 350203 R 340054 CDS YP_002923249.1 238897570 7949944 complement(351045..351449) 1 NC_012751.1 lipoprotein 351449 7949944 HDEF_0341 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein YP_002923249.1 351045 R 340054 CDS YP_002923250.1 238897571 7949945 complement(351526..352008) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 352008 gspM 7949945 gspM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923250.1 351526 R 340054 CDS YP_002923251.1 238897572 7949946 complement(352019..353275) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 353275 gspL 7949946 gspL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923251.1 352019 R 340054 CDS YP_002923252.1 238897573 7949947 complement(353272..354222) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 354222 gspK 7949947 gspK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923252.1 353272 R 340054 CDS YP_002923253.1 238897574 7949948 complement(354194..354343) 1 NC_012751.1 hypothetical protein 354343 7949948 HDEF_0345 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923253.1 354194 R 340054 CDS YP_002923254.1 238897575 7949949 complement(354347..354952) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 354952 gspJ 7949949 gspJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923254.1 354347 R 340054 CDS YP_002923255.1 238897576 7949950 complement(354949..355302) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 355302 gspI 7949950 gspI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923255.1 354949 R 340054 CDS YP_002923256.1 238897577 7949951 complement(355346..355876) 1 NC_012751.1 protein exporter, transport across outer membrane (General Secretory Pathway) 355876 gspH 7949951 gspH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923256.1 355346 R 340054 CDS YP_002923257.1 238897578 7949952 complement(355877..356326) 1 NC_012751.1 COG2165; protein exporter, transport across outer membrane (General Secretory Pathway) 356326 gspG 7949952 gspG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein exporter, transport across outer membrane (General Secretory Pathway) YP_002923257.1 355877 R 340054 CDS YP_002923258.1 238897579 7951941 complement(356814..358496) 1 NC_012751.1 reverse transcriptase 358496 7951941 HDEF_0351 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923258.1 356814 R 340054 CDS YP_002923259.1 238897580 7949955 359335..362190 1 NC_012751.1 COG1530; RNase E: endoribonuclease for rRNA processing and mRNA degradation 362190 rne 7949955 rne Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase E: endoribonuclease for rRNA processing and mRNA degradation YP_002923259.1 359335 D 340054 CDS YP_002923260.1 238897581 7949956 362150..363274 1 NC_012751.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 363274 pyrC 7949956 pyrC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydroorotase YP_002923260.1 362150 D 340054 CDS YP_002923261.1 238897582 7949957 363332..363676 1 NC_012751.1 COG0316; hypothetical protein 363676 erpA 7949957 erpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923261.1 363332 D 340054 CDS YP_002923262.1 238897583 7949958 complement(363708..364796) 1 NC_012751.1 COG0536; GTP-binding protein associated with DNA replication of some extrachromosomal elements 364796 obgE 7949958 obgE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP-binding protein associated with DNA replication of some extrachromosomal elements YP_002923262.1 363708 R 340054 CDS YP_002923263.1 238897584 7949959 complement(364800..365879) 1 NC_012751.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 365879 mltC 7949959 mltC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) murein transglycosylase C YP_002923263.1 364800 R 340054 CDS YP_002923264.1 238897585 7949960 complement(365912..366184) 1 NC_012751.1 COG2924; hypothetical protein 366184 7949960 HDEF_0357 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923264.1 365912 R 340054 CDS YP_002923265.1 238897586 7949961 complement(366177..367271) 1 NC_012751.1 COG1194; adenine DNA glycosylase 367271 mutY 7949961 mutY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenine DNA glycosylase YP_002923265.1 366177 R 340054 CDS YP_002923266.1 238897587 7949962 367397..368122 1 NC_012751.1 COG0220; tRNA (m7G46) methyltransferase, SAM-dependent 368122 trmI 7949962 trmI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA (m7G46) methyltransferase, SAM-dependent YP_002923266.1 367397 D 340054 CDS YP_002923267.1 238897588 7949964 complement(368330..369202) 1 NC_012751.1 COG0313; tetrapyrrole methylase 369202 7949964 HDEF_0361 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tetrapyrrole methylase YP_002923267.1 368330 R 340054 CDS YP_002923268.1 238897589 7949965 complement(369206..369325) 1 NC_012751.1 hypothetical protein 369325 7949965 HDEF_0362 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923268.1 369206 R 340054 CDS YP_002923269.1 238897590 7949966 369326..370663 1 NC_012751.1 COG4942; peptidase, M23 family domain protein 370663 7949966 HDEF_0363 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidase, M23 family domain protein YP_002923269.1 369326 D 340054 CDS YP_002923270.1 238897591 7949967 370768..371220 1 NC_012751.1 COG2707; hypothetical protein 371220 7949967 HDEF_0364 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923270.1 370768 D 340054 CDS YP_002923271.1 238897592 7949969 complement(373416..374819) 1 NC_012751.1 COG0008; glutamate tRNA synthetase, catalytic subunit 374819 gltX 7949969 gltX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamate tRNA synthetase, catalytic subunit YP_002923271.1 373416 R 340054 CDS YP_002923272.1 238897593 7949970 complement(374901..375200) 1 NC_012751.1 COG2901; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication 375200 fis 7949970 fis Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication YP_002923272.1 374901 R 340054 CDS YP_002923273.1 238897594 7949971 375313..375447 1 NC_012751.1 hypothetical protein 375447 7949971 HDEF_0368 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923273.1 375313 D 340054 CDS YP_002923274.1 238897595 7949972 375404..375733 1 NC_012751.1 COG0268; 30S ribosomal subunit protein S20 375733 rpsT 7949972 rpsT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S20 YP_002923274.1 375404 D 340054 CDS YP_002923275.1 238897596 7949973 complement(375907..377073) 1 NC_012751.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 377073 nhaA 7949973 nhaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pH-dependent sodium/proton antiporter YP_002923275.1 375907 R 340054 CDS YP_002923276.1 238897597 7949974 complement(377152..378267) 1 NC_012751.1 COG0484; heat shock protein 40 378267 dnaJ 7949974 dnaJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) heat shock protein 40 YP_002923276.1 377152 R 340054 CDS YP_002923277.1 238897598 7949975 complement(378392..380299) 1 NC_012751.1 COG0443; chaperone Hsp70 in DNA biosynthesis/cell division 380299 dnaK 7949975 dnaK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chaperone Hsp70 in DNA biosynthesis/cell division YP_002923277.1 378392 R 340054 CDS YP_002923278.1 238897599 7949976 complement(380377..380937) 1 NC_012751.1 COG0221; inorganic pyrophosphatase 380937 ppa 7949976 ppa Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inorganic pyrophosphatase YP_002923278.1 380377 R 340054 CDS YP_002923279.1 238897600 7949977 complement(381050..382456) 1 NC_012751.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 382456 sthA 7949977 sthA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) soluble pyridine nucleotide transhydrogenase YP_002923279.1 381050 R 340054 CDS YP_002923280.1 238897601 7949978 382641..383255 1 NC_012751.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 383255 fabR 7949978 fabR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding transcriptional repressor FabR YP_002923280.1 382641 D 340054 CDS YP_002923281.1 238897602 7949979 383760..384503 1 NC_012751.1 similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 384503 glnH 7949979 glnH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamine ABC transporter periplasmic protein YP_002923281.1 383760 D 340054 CDS YP_002923282.1 238897603 7949980 384538..385194 1 NC_012751.1 similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 385194 glnP 7949980 glnP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamine ABC transporter permease YP_002923282.1 384538 D 340054 CDS YP_002923283.1 238897604 7949981 385191..385916 1 NC_012751.1 similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 385916 glnQ 7949981 glnQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamine ABC transporter ATP-binding protein YP_002923283.1 385191 D 340054 CDS YP_002923284.1 238897605 7949982 385944..386066 1 NC_012751.1 hypothetical protein 386066 7949982 HDEF_0379 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923284.1 385944 D 340054 CDS YP_002923285.1 238897606 7949984 386275..386595 1 NC_012751.1 N and C terminal truncations; transposase 386595 7949984 HDEF_0381 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923285.1 386275 D 340054 CDS YP_002923286.1 238897607 7949985 386842..388461 1 NC_012751.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 388461 pckA 7949985 pckA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoenolpyruvate carboxykinase YP_002923286.1 386842 D 340054 CDS YP_002923287.1 238897608 7949986 388549..388839 1 NC_012751.1 hypothetical protein 388839 7949986 HDEF_0383 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923287.1 388549 D 340054 CDS YP_002923288.1 238897609 7949987 complement(388746..388967) 1 NC_012751.1 COG0254; 50S ribosomal subunit protein L31 388967 rpmE 7949987 rpmE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L31 YP_002923288.1 388746 R 340054 CDS YP_002923289.1 238897610 7949988 389467..390276 1 NC_012751.1 COG2912; transcriptional regulator 390276 7949988 HDEF_0385 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923289.1 389467 D 340054 CDS YP_002923290.1 238897611 7949989 390285..391118 1 NC_012751.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 391118 kdsA 7949989 kdsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-dehydro-3-deoxyphosphooctonate aldolase YP_002923290.1 390285 D 340054 CDS YP_002923291.1 238897612 7949990 391397..392431 1 NC_012751.1 COG1135; D- and L-methionine transport protein (ABC superfamily, atp_bind) 392431 metN 7949990 metN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D- and L-methionine transport protein (ABC superfamily, atp_bind) YP_002923291.1 391397 D 340054 CDS YP_002923292.1 238897613 7949991 392424..393077 1 NC_012751.1 part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit 393077 metI 7949991 metI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DL-methionine transporter permease subunit YP_002923292.1 392424 D 340054 CDS YP_002923293.1 238897614 7949992 393147..393971 1 NC_012751.1 COG1464; D-methionine transport protein (ABC superfamily, peri_bind) 393971 metQ 7949992 metQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-methionine transport protein (ABC superfamily, peri_bind) YP_002923293.1 393147 D 340054 CDS YP_002923294.1 238897615 7949993 complement(393977..394069) 1 NC_012751.1 hypothetical protein 394069 7949993 HDEF_0390 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923294.1 393977 R 340054 CDS YP_002923295.1 238897616 7949994 394110..395849 1 NC_012751.1 COG0442; proline tRNA synthetase 395849 proS 7949994 proS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) proline tRNA synthetase YP_002923295.1 394110 D 340054 CDS YP_002923296.1 238897617 7949995 395858..396898 1 NC_012751.1 COG0463; glycosyltransferase group 2 396898 7949995 HDEF_0392 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyltransferase group 2 YP_002923296.1 395858 D 340054 CDS YP_002923297.1 238897618 7949996 complement(396914..399133) 1 NC_012751.1 (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase 399133 relA 7949996 relA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GDP/GTP pyrophosphokinase YP_002923297.1 396914 R 340054 CDS YP_002923298.1 238897619 7949997 399165..399305 1 NC_012751.1 hypothetical protein 399305 7949997 HDEF_0394 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923298.1 399165 D 340054 CDS YP_002923299.1 238897620 7949998 complement(399234..399374) 1 NC_012751.1 hypothetical protein 399374 7949998 HDEF_0395 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923299.1 399234 R 340054 CDS YP_002923300.1 238897621 7949999 complement(399375..399881) 1 NC_012751.1 COG0590; CMP/dCMP deaminase; zinc-binding 399881 7949999 HDEF_0396 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CMP/dCMP deaminase; zinc-binding YP_002923300.1 399375 R 340054 CDS YP_002923301.1 238897622 7950000 complement(399970..400551) 1 NC_012751.1 regulatory protein 400551 7950000 HDEF_0397 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) regulatory protein YP_002923301.1 399970 R 340054 CDS YP_002923302.1 238897623 7950001 400835..402112 1 NC_012751.1 tyrosine-protein phosphatase 402112 yopH 7950001 yopH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tyrosine-protein phosphatase YP_002923302.1 400835 D 340054 CDS YP_002923303.1 238897624 7950003 402996..404618 1 NC_012751.1 metalloprotease 404618 7950003 HDEF_0400 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) metalloprotease YP_002923303.1 402996 D 340054 CDS YP_002923304.1 238897625 7950004 complement(404685..406049) 1 NC_012751.1 cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease 406049 proY 7950004 proY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) proline-specific permease YP_002923304.1 404685 R 340054 CDS YP_002923305.1 238897626 7950005 complement(406056..406718) 1 NC_012751.1 COG0302; GTP cyclohydrolase I 406718 folE 7950005 folE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP cyclohydrolase I YP_002923305.1 406056 R 340054 CDS YP_002923306.1 238897627 7950006 complement(406799..408391) 1 NC_012751.1 COG0488; ABC transporter ATP-binding protein 408391 7950006 HDEF_0403 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter ATP-binding protein YP_002923306.1 406799 R 340054 CDS YP_002923307.1 238897628 7950007 complement(408733..409290) 1 NC_012751.1 hypothetical protein 409290 7950007 HDEF_0404 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923307.1 408733 R 340054 CDS YP_002923308.1 238897629 7950008 complement(409333..411651) 1 NC_012751.1 hypothetical protein 411651 7950008 HDEF_0405 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923308.1 409333 R 340054 CDS YP_002923309.1 238897630 7950010 complement(412026..412712) 1 NC_012751.1 hypothetical protein 412712 7950010 HDEF_0408 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923309.1 412026 R 340054 CDS YP_002923310.1 238897631 7950012 412672..412881 1 NC_012751.1 hypothetical protein 412881 7950012 HDEF_0407 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923310.1 412672 D 340054 CDS YP_002923311.1 238897632 7950011 complement(413042..413407) 1 NC_012751.1 N terminal truncation; phage lysozyme 413407 7950011 HDEF_0409 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage lysozyme YP_002923311.1 413042 R 340054 CDS YP_002923312.1 238897633 7950013 complement(413492..413830) 1 NC_012751.1 phage holin 413830 7950013 HDEF_0410 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage holin YP_002923312.1 413492 R 340054 CDS YP_002923313.1 238897634 7950014 complement(414463..415686) 1 NC_012751.1 phosphoesterase 415686 7950014 HDEF_0411 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoesterase YP_002923313.1 414463 R 340054 CDS YP_002923314.1 238897635 7950015 415853..416230 1 NC_012751.1 ISHde1, transposase 416230 7950015 HDEF_0412 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923314.1 415853 D 340054 CDS YP_002923315.1 238897636 7950016 416271..416675 1 NC_012751.1 ISHde1, transposase 416675 7950016 HDEF_0413 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923315.1 416271 D 340054 CDS YP_002923316.1 238897637 7950017 complement(416695..417393) 1 NC_012751.1 C terminal truncation; VirD4 conjugal transfer protein 417393 virD4 7950017 virD4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirD4 conjugal transfer protein YP_002923316.1 416695 R 340054 CDS YP_002923317.1 238897638 7950018 complement(417390..417734) 1 NC_012751.1 hypothetical protein 417734 7950018 HDEF_0415 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923317.1 417390 R 340054 CDS YP_002923318.1 238897639 7950019 complement(417751..418776) 1 NC_012751.1 COG0630; VirB11 conjugal transfer protein 418776 virB11 7950019 virB11 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB11 conjugal transfer protein YP_002923318.1 417751 R 340054 CDS YP_002923319.1 238897640 7950020 complement(418766..419431) 1 NC_012751.1 N terminal truncation; COG2948; VirB10 conjugal transfer protein 419431 virB10 7950020 virB10 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB10 conjugal transfer protein YP_002923319.1 418766 R 340054 CDS YP_002923320.1 238897641 7950021 complement(419428..420087) 1 NC_012751.1 hypothetical protein 420087 7950021 HDEF_0418 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923320.1 419428 R 340054 CDS YP_002923321.1 238897642 7950022 complement(420074..420874) 1 NC_012751.1 VirB9 conjugal transfer protein 420874 virB9 7950022 virB9 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB9 conjugal transfer protein YP_002923321.1 420074 R 340054 CDS YP_002923322.1 238897643 7950023 complement(420878..423994) 1 NC_012751.1 MobB relaxase/mobilization protein 423994 mobB_1 7950023 mobB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002923322.1 420878 R 340054 CDS YP_002923323.1 238897644 7950024 complement(423984..424307) 1 NC_012751.1 MobC relaxase/mobilization protein 424307 mobC_1 7950024 mobC_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobC relaxase/mobilization protein YP_002923323.1 423984 R 340054 CDS YP_002923324.1 238897645 7950025 424337..424453 1 NC_012751.1 hypothetical protein 424453 7950025 HDEF_0422 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923324.1 424337 D 340054 CDS YP_002923325.1 238897646 7950026 424654..425064 1 NC_012751.1 hypothetical protein 425064 7950026 HDEF_0423 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923325.1 424654 D 340054 CDS YP_002923326.1 238897647 7950027 425066..425776 1 NC_012751.1 plasmid stability protein StbB 425776 stbB_1 7950027 stbB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid stability protein StbB YP_002923326.1 425066 D 340054 CDS YP_002923327.1 238897648 7950028 425789..426388 1 NC_012751.1 hypothetical protein 426388 7950028 HDEF_0425 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923327.1 425789 D 340054 CDS YP_002923328.1 238897649 7950029 426552..426803 1 NC_012751.1 addiction module antitoxin 426803 7950029 HDEF_0426 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923328.1 426552 D 340054 CDS YP_002923329.1 238897650 7950030 426803..427222 1 NC_012751.1 COG1487; hypothetical protein 427222 7950030 HDEF_0427 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923329.1 426803 D 340054 CDS YP_002923330.1 238897651 7950031 complement(427223..428173) 1 NC_012751.1 VirB6 conjugal transfer protein 428173 virB6 7950031 virB6 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB6 conjugal transfer protein YP_002923330.1 427223 R 340054 CDS YP_002923331.1 238897652 7950032 complement(428196..428552) 1 NC_012751.1 hypothetical protein 428552 7950032 HDEF_0429 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923331.1 428196 R 340054 CDS YP_002923332.1 238897653 7950033 complement(428549..428965) 1 NC_012751.1 COG1487; hypothetical protein 428965 vagD 7950033 vagD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923332.1 428549 R 340054 CDS YP_002923333.1 238897654 7950034 complement(428977..429207) 1 NC_012751.1 addiction module 429207 vagC 7950034 vagC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002923333.1 428977 R 340054 CDS YP_002923334.1 238897655 7950035 complement(429281..429967) 1 NC_012751.1 VirB5 conjugal transfer protein 429967 virB5 7950035 virB5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB5 conjugal transfer protein YP_002923334.1 429281 R 340054 CDS YP_002923335.1 238897656 7950036 complement(429964..431067) 1 NC_012751.1 N terminal truncation; VirB4 conjugal transfer protein 431067 virB4 7950036 virB4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) VirB4 conjugal transfer protein YP_002923335.1 429964 R 340054 CDS YP_002923336.1 238897657 7950037 complement(431482..431715) 1 NC_012751.1 ISHde5, transposase 431715 7950037 HDEF_0434 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde5, transposase YP_002923336.1 431482 R 340054 CDS YP_002923337.1 238897658 7950038 complement(431854..432213) 1 NC_012751.1 ISHde5, transposase 432213 7950038 HDEF_0435 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde5, transposase YP_002923337.1 431854 R 340054 CDS YP_002923338.1 238897659 7950039 complement(432279..432431) 1 NC_012751.1 hypothetical protein 432431 7950039 HDEF_0436 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923338.1 432279 R 340054 CDS YP_002923339.1 238897660 7950040 complement(432727..435045) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_0438; RTX-family protein-2 435045 rtxA_02 7950040 rtxA_02 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-2 YP_002923339.1 432727 R 340054 CDS YP_002923340.1 238897661 7950041 complement(435055..438645) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_0437; RTX-family protein-1 438645 rtxA_01 7950041 rtxA_01 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-1 YP_002923340.1 435055 R 340054 CDS YP_002923341.1 238897662 7950042 438843..444218 1 NC_012751.1 RTX-family protein-3 444218 rtxA_03 7950042 rtxA_03 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-3 YP_002923341.1 438843 D 340054 CDS YP_002923342.1 238897663 7950043 444354..444569 1 NC_012751.1 hypothetical protein 444569 7950043 HDEF_0440 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923342.1 444354 D 340054 CDS YP_002923343.1 238897664 7951942 445115..446797 1 NC_012751.1 reverse transcriptase 446797 7951942 HDEF_0441 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923343.1 445115 D 340054 CDS YP_002923344.1 238897665 7950045 447145..447990 1 NC_012751.1 COG0564; 23S rRNA pseudouridylate synthase 447990 rluC 7950045 rluC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 23S rRNA pseudouridylate synthase YP_002923344.1 447145 D 340054 CDS YP_002923345.1 238897666 7950046 448060..448590 1 NC_012751.1 COG1399; hypothetical protein 448590 7950046 HDEF_0443 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923345.1 448060 D 340054 CDS YP_002923346.1 238897667 7950047 448607..448777 1 NC_012751.1 COG0333; 50S ribosomal subunit protein L32 448777 rpmF 7950047 rpmF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L32 YP_002923346.1 448607 D 340054 CDS YP_002923347.1 238897668 7950048 448997..449941 1 NC_012751.1 COG0332; 3-oxoacyl-ACP synthase III 449941 fabH 7950048 fabH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-oxoacyl-ACP synthase III YP_002923347.1 448997 D 340054 CDS YP_002923348.1 238897669 7950049 449961..450935 1 NC_012751.1 COG0331; malonyl CoA-ACP transacylase 450935 fabD 7950049 fabD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) malonyl CoA-ACP transacylase YP_002923348.1 449961 D 340054 CDS YP_002923349.1 238897670 7950050 450925..451662 1 NC_012751.1 COG1028; 3-oxoacyl-ACP reductase 451662 fabG 7950050 fabG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-oxoacyl-ACP reductase YP_002923349.1 450925 D 340054 CDS YP_002923350.1 238897671 7950051 452028..452279 1 NC_012751.1 COG0236; acyl carrier protein 452279 acpP 7950051 acpP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acyl carrier protein YP_002923350.1 452028 D 340054 CDS YP_002923351.1 238897672 7950052 452344..453585 1 NC_012751.1 COG0304; 3-oxoacyl-ACP synthase II 453585 fabF 7950052 fabF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-oxoacyl-ACP synthase II YP_002923351.1 452344 D 340054 CDS YP_002923352.1 238897673 7950053 453788..454813 1 NC_012751.1 COG1559; aminodeoxychorismate lyase 454813 7950053 HDEF_0450 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminodeoxychorismate lyase YP_002923352.1 453788 D 340054 CDS YP_002923353.1 238897674 7950054 454803..455435 1 NC_012751.1 COG0125; thymidylate kinase 455435 tmk 7950054 tmk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thymidylate kinase YP_002923353.1 454803 D 340054 CDS YP_002923354.1 238897675 7950055 455440..456423 1 NC_012751.1 COG0470; DNA polymerase III, delta prime subunit 456423 holB 7950055 holB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, delta prime subunit YP_002923354.1 455440 D 340054 CDS YP_002923355.1 238897676 7950056 456453..457250 1 NC_012751.1 COG0084; metallodependent hydrolase 457250 7950056 HDEF_0453 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) metallodependent hydrolase YP_002923355.1 456453 D 340054 CDS YP_002923356.1 238897677 7950057 457489..458922 1 NC_012751.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 458922 ptsG 7950057 ptsG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS system glucose-specific transporter subunits IIBC YP_002923356.1 457489 D 340054 CDS YP_002923357.1 238897678 7950058 complement(459178..459855) 1 NC_012751.1 COG0692; uracil-DNA-glycosylase 459855 ung 7950058 ung Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) uracil-DNA-glycosylase YP_002923357.1 459178 R 340054 CDS YP_002923358.1 238897679 7950059 complement(459821..461185) 1 NC_012751.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 461185 srmB 7950059 srmB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent RNA helicase SrmB YP_002923358.1 459821 R 340054 CDS YP_002923359.1 238897680 7950060 complement(461488..462198) 1 NC_012751.1 COG0670; hypothetical protein 462198 7950060 HDEF_0457 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923359.1 461488 R 340054 CDS YP_002923360.1 238897681 7950061 462421..463422 1 NC_012751.1 COG0533; O-sialoglycoprotein endopeptidase 463422 7950061 HDEF_0458 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) O-sialoglycoprotein endopeptidase YP_002923360.1 462421 D 340054 CDS YP_002923361.1 238897682 7950062 complement(463499..464563) 1 NC_012751.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 464563 aroC 7950062 aroC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chorismate synthase YP_002923361.1 463499 R 340054 CDS YP_002923362.1 238897683 7950063 464827..465765 1 NC_012751.1 oxidizes malate to oxaloacetate; malate dehydrogenase 465765 mdh 7950063 mdh Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) malate dehydrogenase YP_002923362.1 464827 D 340054 CDS YP_002923363.1 238897684 7950064 465870..466187 1 NC_012751.1 COG2127; regulatory protein for ClpA substrate specificity 466187 clpS 7950064 clpS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) regulatory protein for ClpA substrate specificity YP_002923363.1 465870 D 340054 CDS YP_002923364.1 238897685 7950065 466215..468503 1 NC_012751.1 COG0542; ATP-dependent specificity subunit of clpA-clpP serine protease 468503 clpA 7950065 clpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent specificity subunit of clpA-clpP serine protease YP_002923364.1 466215 D 340054 CDS YP_002923365.1 238897686 7950066 complement(468599..468817) 1 NC_012751.1 COG0361; protein chain initiation factor IF-1 468817 infA 7950066 infA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein chain initiation factor IF-1 YP_002923365.1 468599 R 340054 CDS YP_002923366.1 238897687 7950067 complement(468902..469057) 1 NC_012751.1 hypothetical protein 469057 7950067 HDEF_0464 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923366.1 468902 R 340054 CDS YP_002923367.1 238897688 7950068 469129..469581 1 NC_012751.1 COG2867; polyketide cyclase/lipid transport protein 469581 7950068 HDEF_0465 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polyketide cyclase/lipid transport protein YP_002923367.1 469129 D 340054 CDS YP_002923368.1 238897689 7950069 469702..470001 1 NC_012751.1 COG1825; 50S ribosomal subunit protein L25 470001 rplY 7950069 rplY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L25 YP_002923368.1 469702 D 340054 CDS YP_002923369.1 238897690 7950070 complement(469963..470361) 1 NC_012751.1 COG1539; dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activity 470361 folB 7950070 folB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activity YP_002923369.1 469963 R 340054 CDS YP_002923370.1 238897691 7950071 complement(470371..470484) 1 NC_012751.1 hypothetical protein 470484 7950071 HDEF_0468 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923370.1 470371 R 340054 CDS YP_002923371.1 238897692 7950072 471070..472419 1 NC_012751.1 hypothetical protein 472419 7950072 HDEF_0469 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923371.1 471070 D 340054 CDS YP_002923372.1 238897693 7950073 472537..472698 1 NC_012751.1 hypothetical protein 472698 7950073 HDEF_0470 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923372.1 472537 D 340054 CDS YP_002923373.1 238897694 7950074 complement(472690..473211) 1 NC_012751.1 hypothetical protein 473211 7950074 HDEF_0471 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923373.1 472690 R 340054 CDS YP_002923374.1 238897695 7950075 473235..474368 1 NC_012751.1 COG0477; drug resistance transporter major facilitator superfamily 474368 7950075 HDEF_0472 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) drug resistance transporter major facilitator superfamily YP_002923374.1 473235 D 340054 CDS YP_002923375.1 238897696 7950076 complement(474410..474859) 1 NC_012751.1 possibly linked to resistance to DNA-damage and respiratory uncoupling; COG0589; universal stress protein A 474859 uspA 7950076 uspA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) universal stress protein A YP_002923375.1 474410 R 340054 CDS YP_002923376.1 238897697 7950077 complement(474943..475758) 1 NC_012751.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 475758 murI 7950077 murI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamate racemase YP_002923376.1 474943 R 340054 CDS YP_002923377.1 238897698 7950078 complement(475829..476011) 1 NC_012751.1 hypothetical protein 476011 7950078 HDEF_0475 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923377.1 475829 R 340054 CDS YP_002923378.1 238897699 7950079 complement(476099..476656) 1 NC_012751.1 COG1949; oligoribonuclease 476656 orn 7950079 orn Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) oligoribonuclease YP_002923378.1 476099 R 340054 CDS YP_002923379.1 238897700 7950080 476766..477824 1 NC_012751.1 COG1162; GTP-binding protein 477824 7950080 HDEF_0477 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP-binding protein YP_002923379.1 476766 D 340054 CDS YP_002923380.1 238897701 7950081 477840..478706 1 NC_012751.1 COG0688; phosphatidylserine decarboxylase 478706 psd 7950081 psd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylserine decarboxylase YP_002923380.1 477840 D 340054 CDS YP_002923381.1 238897702 7950082 478997..482329 1 NC_012751.1 COG3264; hypothetical protein 482329 7950082 HDEF_0479 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923381.1 478997 D 340054 CDS YP_002923382.1 238897703 7950083 complement(482387..483364) 1 NC_012751.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 483364 lysS 7950083 lysS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lysyl-tRNA synthetase YP_002923382.1 482387 R 340054 CDS YP_002923383.1 238897704 7950084 complement(483556..484557) 1 NC_012751.1 COG2805; PilT-like ATPase type IV pilus biogenesis protein 484557 pilT_1 7950084 pilT_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilT-like ATPase type IV pilus biogenesis protein YP_002923383.1 483556 R 340054 CDS YP_002923384.1 238897705 7950085 484578..485297 1 NC_012751.1 COG0325; alanine racemase 485297 7950085 HDEF_0482 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alanine racemase YP_002923384.1 484578 D 340054 CDS YP_002923385.1 238897706 7950086 485284..486111 1 NC_012751.1 COG0345; pyrroline-5-carboxylate reductase, NAD(P)-binding 486111 proC 7950086 proC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyrroline-5-carboxylate reductase, NAD(P)-binding YP_002923385.1 485284 D 340054 CDS YP_002923386.1 238897707 7950087 complement(486533..487045) 1 NC_012751.1 COG1528; cytoplasmic ferritin (iron storage protein) 487045 ftn 7950087 ftn Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytoplasmic ferritin (iron storage protein) YP_002923386.1 486533 R 340054 CDS YP_002923387.1 238897708 7950088 487117..487278 1 NC_012751.1 hypothetical protein 487278 7950088 HDEF_0485 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923387.1 487117 D 340054 CDS YP_002923388.1 238897709 7950089 complement(487164..488660) 1 NC_012751.1 COG5339; hypothetical protein 488660 7950089 HDEF_0486 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923388.1 487164 R 340054 CDS YP_002923389.1 238897710 7950090 complement(488699..489880) 1 NC_012751.1 COG1482; mannose-6-phosphate isomerase 489880 manA 7950090 manA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) mannose-6-phosphate isomerase YP_002923389.1 488699 R 340054 CDS YP_002923390.1 238897711 7950091 490036..492609 1 NC_012751.1 part of multi-chaperone system with DnaK, DnaJ, and GrpE; COG0542; ATP-dependent protease, Hsp 100 492609 clpB 7950091 clpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent protease, Hsp 100 YP_002923390.1 490036 D 340054 CDS YP_002923391.1 238897712 7950092 complement(492759..492899) 1 NC_012751.1 hypothetical protein 492899 7950092 HDEF_0490 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923391.1 492759 R 340054 CDS YP_002923392.1 238897713 7950094 492859..493362 1 NC_012751.1 COG0802; P-loop hydrolase 493362 7950094 HDEF_0489 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) P-loop hydrolase YP_002923392.1 492859 D 340054 CDS YP_002923393.1 238897714 7950093 493359..494387 1 NC_012751.1 COG0860; N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase 494387 amiB 7950093 amiB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase YP_002923393.1 493359 D 340054 CDS YP_002923394.1 238897715 7950095 494435..496216 1 NC_012751.1 stimulates binding of Vsr and MutS to heteroduplex DNA; COG0323; methyl-directed mismatch repair protein 496216 mutL_1 7950095 mutL_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methyl-directed mismatch repair protein YP_002923394.1 494435 D 340054 CDS YP_002923395.1 238897716 7950096 496203..497144 1 NC_012751.1 COG0324; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 497144 miaA 7950096 miaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase YP_002923395.1 496203 D 340054 CDS YP_002923396.1 238897717 7950097 497297..497578 1 NC_012751.1 RNA binding, mRNA degradation, stimulates poly(A) polymerase I; COG1923; host factor I for bacteriophage Q beta replication 497578 hfq 7950097 hfq Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) host factor I for bacteriophage Q beta replication YP_002923396.1 497297 D 340054 CDS YP_002923397.1 238897718 7950098 complement(497649..497804) 1 NC_012751.1 hypothetical protein 497804 7950098 HDEF_0495 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923397.1 497649 R 340054 CDS YP_002923398.1 238897719 7950099 complement(497899..498048) 1 NC_012751.1 hypothetical protein 498048 7950099 HDEF_0496 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923398.1 497899 R 340054 CDS YP_002923399.1 238897720 7950100 498124..499356 1 NC_012751.1 with HflC, part of modulator for protease specific for FtsH phage lambda cII repressor; COG0330; HflK 499356 hflK 7950100 hflK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) HflK YP_002923399.1 498124 D 340054 CDS YP_002923400.1 238897721 7950101 499362..500351 1 NC_012751.1 with HflK, part of modulator for protease specific for FtsH phage lambda cII repressor; with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 500351 hflC 7950101 hflC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) FtsH protease regulator HflC YP_002923400.1 499362 D 340054 CDS YP_002923401.1 238897722 7950102 complement(500402..500809) 1 NC_012751.1 COG0456; modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine 500809 rimI 7950102 rimI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine YP_002923401.1 500402 R 340054 CDS YP_002923402.1 238897723 7950103 complement(500793..501227) 1 NC_012751.1 COG3050; DNA polymerase III, psi subunit 501227 holD 7950103 holD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, psi subunit YP_002923402.1 500793 R 340054 CDS YP_002923403.1 238897724 7950104 501383..501490 1 NC_012751.1 hypothetical protein 501490 7950104 HDEF_0501 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923403.1 501383 D 340054 CDS YP_002923404.1 238897725 7950105 501562..503055 1 NC_012751.1 COG1007; NADH dehydrogenase I chain N, membrane subunit 503055 nuoN 7950105 nuoN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain N, membrane subunit YP_002923404.1 501562 D 340054 CDS YP_002923405.1 238897726 7950106 complement(503161..503394) 1 NC_012751.1 hypothetical protein 503394 7950106 HDEF_0503 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923405.1 503161 R 340054 CDS YP_002923406.1 238897727 7950107 503688..505892 1 NC_012751.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 505892 priA 7950107 priA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) primosome assembly protein PriA YP_002923406.1 503688 D 340054 CDS YP_002923407.1 238897728 7950108 506072..506524 1 NC_012751.1 COG1970; mechanosensitive channel 506524 mscL 7950108 mscL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) mechanosensitive channel YP_002923407.1 506072 D 340054 CDS YP_002923408.1 238897729 7950109 507011..508168 1 NC_012751.1 COG0192; methionine adenosyltransferase 1 (AdoMet synthetase) 508168 metK 7950109 metK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methionine adenosyltransferase 1 (AdoMet synthetase) YP_002923408.1 507011 D 340054 CDS YP_002923409.1 238897730 7950110 508200..508295 1 NC_012751.1 hypothetical protein 508295 7950110 HDEF_0507 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923409.1 508200 D 340054 CDS YP_002923410.1 238897731 7950111 complement(508290..508946) 1 NC_012751.1 COG0461; orotate phosphoribosyltransferase 508946 pyrE 7950111 pyrE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) orotate phosphoribosyltransferase YP_002923410.1 508290 R 340054 CDS YP_002923411.1 238897732 7950112 complement(508981..509706) 1 NC_012751.1 COG0689; RNase PH 509706 rph 7950112 rph Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase PH YP_002923411.1 508981 R 340054 CDS YP_002923412.1 238897733 7950113 509843..510706 1 NC_012751.1 COG1561; hypothetical protein 510706 7950113 HDEF_0510 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923412.1 509843 D 340054 CDS YP_002923413.1 238897734 7950114 complement(510800..511594) 1 NC_012751.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 511594 speD 7950114 speD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) S-adenosylmethionine decarboxylase YP_002923413.1 510800 R 340054 CDS YP_002923414.1 238897735 7950115 complement(511668..512540) 1 NC_012751.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 512540 speE 7950115 speE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) spermidine synthase YP_002923414.1 511668 R 340054 CDS YP_002923415.1 238897736 7950116 512705..513394 1 NC_012751.1 COG1214; peptidase, M22 family 513394 7950116 HDEF_0513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidase, M22 family YP_002923415.1 512705 D 340054 CDS YP_002923416.1 238897737 7950117 513398..514996 1 NC_012751.1 C terminal truncation; COG1649; glycosyl hydrolase enzymes, family DUF187 514996 7950117 HDEF_0514 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyl hydrolase enzymes, family DUF187 YP_002923416.1 513398 D 340054 CDS YP_002923417.1 238897738 7950118 514989..516152 1 NC_012751.1 COG0349; ribonuclease D 516152 rnd 7950118 rnd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribonuclease D YP_002923417.1 514989 D 340054 CDS YP_002923418.1 238897739 7950119 complement(516181..517269) 1 NC_012751.1 modification of heptose region of core; COG0859; lipopolysaccharide core biosynthesis 517269 rfaQ 7950119 rfaQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipopolysaccharide core biosynthesis YP_002923418.1 516181 R 340054 CDS YP_002923419.1 238897740 7950120 517372..517623 1 NC_012751.1 COG0425; conserved protein required for cell growth 517623 sirA 7950120 sirA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) conserved protein required for cell growth YP_002923419.1 517372 D 340054 CDS YP_002923420.1 238897741 7950121 517810..517983 1 NC_012751.1 hypothetical protein 517983 7950121 HDEF_0518 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923420.1 517810 D 340054 CDS YP_002923421.1 238897742 7950122 518032..518250 1 NC_012751.1 hypothetical protein 518250 7950122 HDEF_0519 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923421.1 518032 D 340054 CDS YP_002923422.1 238897743 7950123 518508..518738 1 NC_012751.1 hypothetical protein 518738 7950123 HDEF_0520 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923422.1 518508 D 340054 CDS YP_002923423.1 238897744 7950124 complement(518997..519125) 1 NC_012751.1 hypothetical protein 519125 7950124 HDEF_0521 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923423.1 518997 R 340054 CDS YP_002923424.1 238897745 7950125 519704..519811 1 NC_012751.1 hypothetical protein 519811 7950125 HDEF_0522 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923424.1 519704 D 340054 CDS YP_002923425.1 238897746 7950126 519759..519869 1 NC_012751.1 hypothetical protein 519869 7950126 HDEF_0523 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923425.1 519759 D 340054 CDS YP_002923426.1 238897747 7950127 complement(519851..521224) 1 NC_012751.1 COG0477; transporter major facilitator superfamily 521224 7950127 HDEF_0524 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transporter major facilitator superfamily YP_002923426.1 519851 R 340054 CDS YP_002923427.1 238897748 7950128 521464..522927 1 NC_012751.1 COG4783; peptidase, M24 family 522927 7950128 HDEF_0525 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidase, M24 family YP_002923427.1 521464 D 340054 CDS YP_002923428.1 238897749 7950129 complement(523009..524619) 1 NC_012751.1 COG0029; quinolinate synthetase, B protein (L-aspartate oxidase) 524619 nadB 7950129 nadB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) quinolinate synthetase, B protein (L-aspartate oxidase) YP_002923428.1 523009 R 340054 CDS YP_002923429.1 238897750 7950130 524784..525359 1 NC_012751.1 COG1595; RNA polymerase, sigma 24 (sigma E) factor 525359 rpoE 7950130 rpoE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase, sigma 24 (sigma E) factor YP_002923429.1 524784 D 340054 CDS YP_002923430.1 238897751 7950131 525385..525990 1 NC_012751.1 COG3073; anti sigma E (sigma 24) factor, negative regulator 525990 rseA 7950131 rseA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) anti sigma E (sigma 24) factor, negative regulator YP_002923430.1 525385 D 340054 CDS YP_002923431.1 238897752 7950132 526014..526967 1 NC_012751.1 COG3026; anti sigma E (sigma 24) factor, negative regulator 526967 rseB 7950132 rseB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) anti sigma E (sigma 24) factor, negative regulator YP_002923431.1 526014 D 340054 CDS YP_002923432.1 238897753 7950133 526964..528763 1 NC_012751.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 528763 lepA 7950133 lepA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP-binding protein LepA YP_002923432.1 526964 D 340054 CDS YP_002923433.1 238897754 7950134 528805..529755 1 NC_012751.1 catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 529755 lepB 7950134 lepB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) signal peptidase I YP_002923433.1 528805 D 340054 CDS YP_002923434.1 238897755 7950135 529835..530515 1 NC_012751.1 COG0571; RNase III, ds RNA 530515 rnc 7950135 rnc Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase III, ds RNA YP_002923434.1 529835 D 340054 CDS YP_002923435.1 238897756 7950136 530512..531459 1 NC_012751.1 COG1159; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division 531459 era 7950136 era Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division YP_002923435.1 530512 D 340054 CDS YP_002923436.1 238897757 7950137 531472..532176 1 NC_012751.1 targets RecA to ssDNA-dsDNA junction; COG1381; gap repair protein, part of RecFOR complex 532176 recO 7950137 recO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) gap repair protein, part of RecFOR complex YP_002923436.1 531472 D 340054 CDS YP_002923437.1 238897758 7950138 532274..533125 1 NC_012751.1 COG0668; mechanosensitive channel protein (MscS family) 533125 mscS 7950138 mscS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) mechanosensitive channel protein (MscS family) YP_002923437.1 532274 D 340054 CDS YP_002923438.1 238897759 7950140 complement(533888..534814) 1 NC_012751.1 COG3765; regulator of length of O-antigen component of lipopolysaccharide chains 534814 fepE 7950140 fepE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) regulator of length of O-antigen component of lipopolysaccharide chains YP_002923438.1 533888 R 340054 CDS YP_002923439.1 238897760 7950141 complement(534870..536036) 1 NC_012751.1 COG1004; UDP-glucose 6-dehydrogenase 536036 ugd 7950141 ugd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-glucose 6-dehydrogenase YP_002923439.1 534870 R 340054 CDS YP_002923440.1 238897761 7950142 complement(536225..538228) 1 NC_012751.1 with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease 538228 7950142 HDEF_0539 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) macrolide transporter ATP-binding /permease YP_002923440.1 536225 R 340054 CDS YP_002923441.1 238897762 7951943 complement(538247..539929) 1 NC_012751.1 reverse transcriptase 539929 7951943 HDEF_0540 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923441.1 538247 R 340054 CDS YP_002923442.1 238897763 7950144 complement(540531..541667) 1 NC_012751.1 confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA 541667 7950144 HDEF_0541 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) macrolide transporter subunit MacA YP_002923442.1 540531 R 340054 CDS YP_002923443.1 238897764 7950145 complement(541710..542870) 1 NC_012751.1 COG1104; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent 542870 iscS 7950145 iscS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent YP_002923443.1 541710 R 340054 CDS YP_002923444.1 238897765 7950146 complement(542914..543315) 1 NC_012751.1 COG0494; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP 543315 mutT 7950146 mutT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP YP_002923444.1 542914 R 340054 CDS YP_002923445.1 238897766 7950147 complement(543395..543490) 1 NC_012751.1 hypothetical protein 543490 7950147 HDEF_0544 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923445.1 543395 R 340054 CDS YP_002923446.1 238897767 7950148 complement(543541..544116) 1 NC_012751.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 544116 nfuA 7950148 nfuA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA uptake protein YP_002923446.1 543541 R 340054 CDS YP_002923447.1 238897768 7950149 complement(544170..544865) 1 NC_012751.1 involved in high-affinity gluconate transport; gluconate periplasmic binding protein 544865 gntX 7950149 gntX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) gluconate periplasmic binding protein YP_002923447.1 544170 R 340054 CDS YP_002923448.1 238897769 7950150 544908..545687 1 NC_012751.1 COG0596; alpha/beta-hydrolase 545687 bioH 7950150 bioH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alpha/beta-hydrolase YP_002923448.1 544908 D 340054 CDS YP_002923449.1 238897770 7950156 complement(547011..547988) 1 NC_012751.1 COG0564; (pseudouridines 1911, 1915, 1917 in 23S RNA); pseudouridine synthase 547988 rluD 7950156 rluD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pseudouridine synthase YP_002923449.1 547011 R 340054 CDS YP_002923450.1 238897771 7950157 548120..548848 1 NC_012751.1 with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 548848 yfiO 7950157 yfiO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protein assembly complex subunit YfiO YP_002923450.1 548120 D 340054 CDS YP_002923451.1 238897772 7950158 548888..549241 1 NC_012751.1 COG1544; ribosome associated factor, stabilizes ribosomes against dissociation 549241 raiA 7950158 raiA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribosome associated factor, stabilizes ribosomes against dissociation YP_002923451.1 548888 D 340054 CDS YP_002923452.1 238897773 7950159 549297..550391 1 NC_012751.1 COG0482; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 550391 mnmA 7950159 mnmA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_002923452.1 549297 D 340054 CDS YP_002923453.1 238897774 7950160 550503..551879 1 NC_012751.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 551879 purB 7950160 purB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenylosuccinate lyase YP_002923453.1 550503 D 340054 CDS YP_002923454.1 238897775 7950162 complement(553484..553915) 1 NC_012751.1 hypothetical protein 553915 7950162 HDEF_0559 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923454.1 553484 R 340054 CDS YP_002923455.1 238897776 7950163 complement(553896..554162) 1 NC_012751.1 COG2938; hypothetical protein 554162 7950163 HDEF_0560 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923455.1 553896 R 340054 CDS YP_002923456.1 238897777 7950164 complement(554399..554638) 1 NC_012751.1 COG3074; hypothetical protein 554638 7950164 HDEF_0561 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923456.1 554399 R 340054 CDS YP_002923457.1 238897778 7950165 complement(555068..556147) 1 NC_012751.1 hypothetical protein 556147 7950165 HDEF_0562 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923457.1 555068 R 340054 CDS YP_002923458.1 238897779 7950166 complement(556156..556698) 1 NC_012751.1 hypothetical protein 556698 7950166 HDEF_0563 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923458.1 556156 R 340054 CDS YP_002923459.1 238897780 7950167 complement(556655..557359) 1 NC_012751.1 hypothetical protein 557359 7950167 HDEF_0564 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923459.1 556655 R 340054 CDS YP_002923460.1 238897781 7950168 complement(557331..558011) 1 NC_012751.1 hypothetical protein 558011 7950168 HDEF_0565 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923460.1 557331 R 340054 CDS YP_002923461.1 238897782 7950170 complement(560315..560494) 1 NC_012751.1 hypothetical protein 560494 7950170 HDEF_0567 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923461.1 560315 R 340054 CDS YP_002923462.1 238897783 7950171 complement(560478..560990) 1 NC_012751.1 hypothetical protein 560990 7950171 HDEF_0568 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923462.1 560478 R 340054 CDS YP_002923463.1 238897784 7950172 complement(561538..561666) 1 NC_012751.1 hypothetical protein 561666 7950172 HDEF_0569 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923463.1 561538 R 340054 CDS YP_002923464.1 238897785 7950173 561704..562513 1 NC_012751.1 hypothetical protein 562513 7950173 HDEF_0570 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923464.1 561704 D 340054 CDS YP_002923465.1 238897786 7950176 complement(563112..563744) 1 NC_012751.1 N terminal truncation; COG0582; phage integrase 563744 int_1 7950176 int_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage integrase YP_002923465.1 563112 R 340054 CDS YP_002923466.1 238897787 7950177 563936..564256 1 NC_012751.1 similar to APSE H protein; hypothetical protein 564256 7950177 HDEF_0574 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923466.1 563936 D 340054 CDS YP_002923467.1 238897788 7950178 complement(564265..564699) 1 NC_012751.1 single-strand DNA-binding protein 564699 7950178 HDEF_0575 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) single-strand DNA-binding protein YP_002923467.1 564265 R 340054 CDS YP_002923468.1 238897789 7950180 complement(565320..565607) 1 NC_012751.1 hypothetical protein 565607 7950180 HDEF_0577 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923468.1 565320 R 340054 CDS YP_002923469.1 238897790 7950181 complement(565657..565854) 1 NC_012751.1 hypothetical protein 565854 7950181 HDEF_0578 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923469.1 565657 R 340054 CDS YP_002923470.1 238897791 7950183 566557..567177 1 NC_012751.1 phage repressor protein 567177 C_1 7950183 C_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage repressor protein YP_002923470.1 566557 D 340054 CDS YP_002923471.1 238897792 7950184 complement(567221..567961) 1 NC_012751.1 N terminal truncation; COG5464; transposase 567961 7950184 HDEF_0581 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923471.1 567221 R 340054 CDS YP_002923472.1 238897793 7951944 complement(567980..569662) 1 NC_012751.1 reverse transcriptase 569662 7951944 HDEF_0582 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923472.1 567980 R 340054 CDS YP_002923473.1 238897794 7950186 complement(570208..570465) 1 NC_012751.1 COG0238; 30S ribosomal subunit protein S18 570465 rpsR 7950186 rpsR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S18 YP_002923473.1 570208 R 340054 CDS YP_002923474.1 238897795 7950187 complement(570470..570787) 1 NC_012751.1 COG2965; primosomal replication protein N 570787 priB 7950187 priB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) primosomal replication protein N YP_002923474.1 570470 R 340054 CDS YP_002923475.1 238897796 7950188 complement(570784..571215) 1 NC_012751.1 COG0360; 30S ribosomal subunit protein S6 571215 rpsF 7950188 rpsF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S6 YP_002923475.1 570784 R 340054 CDS YP_002923476.1 238897797 7950189 complement(571388..571990) 1 NC_012751.1 COG0164; RNAse HII 571990 rnhB 7950189 rnhB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNAse HII YP_002923476.1 571388 R 340054 CDS YP_002923477.1 238897798 7950190 complement(571990..573135) 1 NC_012751.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 573135 lpxB 7950190 lpxB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipid-A-disaccharide synthase YP_002923477.1 571990 R 340054 CDS YP_002923478.1 238897799 7950191 complement(573137..573940) 1 NC_012751.1 COG1043; UDP-N-acetylglucosamine acetyltransferase 573940 lpxA 7950191 lpxA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylglucosamine acetyltransferase YP_002923478.1 573137 R 340054 CDS YP_002923479.1 238897800 7950192 complement(573944..574456) 1 NC_012751.1 COG0764; (3R)-hydroxymyristoyl-ACP dehydratase 574456 fabZ 7950192 fabZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) (3R)-hydroxymyristoyl-ACP dehydratase YP_002923479.1 573944 R 340054 CDS YP_002923480.1 238897801 7950193 complement(574618..575655) 1 NC_012751.1 COG1044; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase 575655 lpxD 7950193 lpxD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase YP_002923480.1 574618 R 340054 CDS YP_002923481.1 238897802 7950194 complement(575661..576176) 1 NC_012751.1 COG2825; periplasmic chaperone 576176 hlpA 7950194 hlpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) periplasmic chaperone YP_002923481.1 575661 R 340054 CDS YP_002923482.1 238897803 7950195 complement(576205..578598) 1 NC_012751.1 part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT 578598 7950195 HDEF_0592 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protein assembly factor YaeT YP_002923482.1 576205 R 340054 CDS YP_002923483.1 238897804 7950196 complement(578634..580010) 1 NC_012751.1 COG0750; zinc metallopeptidase 580010 rseP 7950196 rseP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) zinc metallopeptidase YP_002923483.1 578634 R 340054 CDS YP_002923484.1 238897805 7950197 complement(580067..580921) 1 NC_012751.1 COG0575; CDP-diglyceride synthase 580921 cdsA 7950197 cdsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CDP-diglyceride synthase YP_002923484.1 580067 R 340054 CDS YP_002923485.1 238897806 7950198 complement(580931..581689) 1 NC_012751.1 COG0020; UDP pyrophosphate synthetase 581689 ispU 7950198 ispU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP pyrophosphate synthetase YP_002923485.1 580931 R 340054 CDS YP_002923486.1 238897807 7950199 582117..582212 1 NC_012751.1 hypothetical protein 582212 7950199 HDEF_0596 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923486.1 582117 D 340054 CDS YP_002923487.1 238897808 7950200 582214..582360 1 NC_012751.1 hypothetical protein 582360 7950200 HDEF_0597 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923487.1 582214 D 340054 CDS YP_002923488.1 238897809 7950202 complement(582969..584060) 1 NC_012751.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 584060 aguA 7950202 aguA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) agmatine deiminase YP_002923488.1 582969 R 340054 CDS YP_002923489.1 238897810 7950203 complement(584060..584947) 1 NC_012751.1 COG0388; N-carbamoylputrescine amidohydrolase 584947 aguB 7950203 aguB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) N-carbamoylputrescine amidohydrolase YP_002923489.1 584060 R 340054 CDS YP_002923490.1 238897811 7950204 complement(584991..585428) 1 NC_012751.1 COG0816; Holliday junction resolvase-like protein 585428 7950204 HDEF_0601 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Holliday junction resolvase-like protein YP_002923490.1 584991 R 340054 CDS YP_002923491.1 238897812 7950205 complement(585428..585985) 1 NC_012751.1 COG1678; hypothetical protein 585985 7950205 HDEF_0602 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923491.1 585428 R 340054 CDS YP_002923492.1 238897813 7950206 complement(586086..587069) 1 NC_012751.1 COG0189; glutathione synthetase 587069 gshB 7950206 gshB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutathione synthetase YP_002923492.1 586086 R 340054 CDS YP_002923493.1 238897814 7950207 complement(587086..587817) 1 NC_012751.1 COG1385; 16S rRNA methyltransferase 587817 rsmE 7950207 rsmE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S rRNA methyltransferase YP_002923493.1 587086 R 340054 CDS YP_002923494.1 238897815 7950208 complement(587834..588538) 1 NC_012751.1 with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit 588538 thiQ 7950208 thiQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiamine transporter ATP-binding subunit YP_002923494.1 587834 R 340054 CDS YP_002923495.1 238897816 7950209 complement(588525..590153) 1 NC_012751.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 590153 thiP 7950209 thiP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiamine transporter membrane protein YP_002923495.1 588525 R 340054 CDS YP_002923496.1 238897817 7950210 complement(590129..591178) 1 NC_012751.1 COG4143; thiamin transporter subunit 591178 tbpA 7950210 tbpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiamin transporter subunit YP_002923496.1 590129 R 340054 CDS YP_002923497.1 238897818 7950211 complement(591197..592414) 1 NC_012751.1 COG1459; type IV pilin biogenesis protein 592414 hofC 7950211 hofC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV pilin biogenesis protein YP_002923497.1 591197 R 340054 CDS YP_002923498.1 238897819 7950212 complement(592429..594018) 1 NC_012751.1 COG2804; hypothetical protein 594018 hofB 7950212 hofB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923498.1 592429 R 340054 CDS YP_002923499.1 238897820 7950213 complement(594018..594458) 1 NC_012751.1 COG4969; PilA type IV pilus major pilin subunit 594458 pilA 7950213 pilA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilA type IV pilus major pilin subunit YP_002923499.1 594018 R 340054 CDS YP_002923500.1 238897821 7950214 594851..595765 1 NC_012751.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 595765 glyQ 7950214 glyQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycyl-tRNA synthetase subunit alpha YP_002923500.1 594851 D 340054 CDS YP_002923501.1 238897822 7950215 595789..597858 1 NC_012751.1 COG0751; glycine tRNA synthetase, beta subunit 597858 glyS 7950215 glyS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycine tRNA synthetase, beta subunit YP_002923501.1 595789 D 340054 CDS YP_002923502.1 238897823 7950216 complement(597954..598049) 1 NC_012751.1 hypothetical protein 598049 7950216 HDEF_0613 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923502.1 597954 R 340054 CDS YP_002923503.1 238897824 7950217 598535..599410 1 NC_012751.1 hypothetical protein 599410 7950217 HDEF_0614 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923503.1 598535 D 340054 CDS YP_002923504.1 238897825 7950218 599592..602768 1 NC_012751.1 Possible C terminal truncation; hypothetical protein 602768 7950218 HDEF_0615 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923504.1 599592 D 340054 CDS YP_002923505.1 238897826 7950219 complement(602788..603192) 1 NC_012751.1 ISHde1, transposase 603192 7950219 HDEF_0616 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923505.1 602788 R 340054 CDS YP_002923506.1 238897827 7950220 complement(603233..603610) 1 NC_012751.1 ISHde1, transposase 603610 7950220 HDEF_0617 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923506.1 603233 R 340054 CDS YP_002923507.1 238897828 7950221 603673..609699 1 NC_012751.1 Possible N terminal truncation; hypothetical protein 609699 7950221 HDEF_0618 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923507.1 603673 D 340054 CDS YP_002923508.1 238897829 7951945 610235..611917 1 NC_012751.1 reverse transcriptase 611917 7951945 HDEF_0619 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923508.1 610235 D 340054 CDS YP_002923509.1 238897830 7950223 611936..614392 1 NC_012751.1 autotransporter adhesin 614392 7950223 HDEF_0620 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) autotransporter adhesin YP_002923509.1 611936 D 340054 CDS YP_002923510.1 238897831 7950224 614379..617042 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_0622; RTX-family protein-4 617042 rtxA_04 7950224 rtxA_04 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-4 YP_002923510.1 614379 D 340054 CDS YP_002923511.1 238897832 7950225 617039..617680 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_0621; RTX-family protein-5 617680 rtxA_05 7950225 rtxA_05 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-5 YP_002923511.1 617039 D 340054 CDS YP_002923512.1 238897833 7950226 complement(617707..618375) 1 NC_012751.1 COG0307; riboflavin synthase, alpha subunit 618375 ribC 7950226 ribC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) riboflavin synthase, alpha subunit YP_002923512.1 617707 R 340054 CDS YP_002923513.1 238897834 7950227 618580..619215 1 NC_012751.1 COG0194; guanylate kinase 619215 gmk 7950227 gmk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) guanylate kinase YP_002923513.1 618580 D 340054 CDS YP_002923514.1 238897835 7950228 619302..619574 1 NC_012751.1 COG1758; RNA polymerase, omega subunit 619574 rpoZ 7950228 rpoZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase, omega subunit YP_002923514.1 619302 D 340054 CDS YP_002923515.1 238897836 7950229 619583..621685 1 NC_012751.1 COG0317; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 621685 spoT 7950229 spoT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase YP_002923515.1 619583 D 340054 CDS YP_002923516.1 238897837 7950230 621786..623879 1 NC_012751.1 COG1200; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration 623879 recG 7950230 recG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration YP_002923516.1 621786 D 340054 CDS YP_002923517.1 238897838 7950231 624105..624410 1 NC_012751.1 part of GroE chaperone system, mopB; COG0234; chaperone Hsp10 (GroES) 624410 groES 7950231 groES Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chaperone Hsp10 (GroES) YP_002923517.1 624105 D 340054 CDS YP_002923518.1 238897839 7950232 624470..626128 1 NC_012751.1 part of GroE chaperone system, mopA; COG0459; chaperone Hsp60 (GroEL) 626128 groEL 7950232 groEL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chaperone Hsp60 (GroEL) YP_002923518.1 624470 D 340054 CDS YP_002923519.1 238897840 7950233 626532..626675 1 NC_012751.1 hypothetical protein 626675 7950233 HDEF_0630 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923519.1 626532 D 340054 CDS YP_002923520.1 238897841 7950234 626977..627627 1 NC_012751.1 hypothetical protein 627627 7950234 HDEF_0631 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923520.1 626977 D 340054 CDS YP_002923521.1 238897842 7950235 627924..628034 1 NC_012751.1 hypothetical protein 628034 7950235 HDEF_0632 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923521.1 627924 D 340054 CDS YP_002923522.1 238897843 7950236 complement(628432..628839) 1 NC_012751.1 hypothetical protein 628839 7950236 HDEF_0633 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923522.1 628432 R 340054 CDS YP_002923523.1 238897844 7950237 complement(628836..629477) 1 NC_012751.1 hypothetical protein 629477 7950237 HDEF_0634 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923523.1 628836 R 340054 CDS YP_002923524.1 238897845 7950238 complement(629464..630255) 1 NC_012751.1 hypothetical protein 630255 7950238 HDEF_0635 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923524.1 629464 R 340054 CDS YP_002923525.1 238897846 7950239 complement(630249..630884) 1 NC_012751.1 RTX-family protein-6 630884 rtxA_06 7950239 rtxA_06 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-6 YP_002923525.1 630249 R 340054 CDS YP_002923526.1 238897847 7950240 631604..632425 1 NC_012751.1 COG0289; dihydrodipicolinate reductase 632425 dapB 7950240 dapB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydrodipicolinate reductase YP_002923526.1 631604 D 340054 CDS YP_002923527.1 238897848 7950241 complement(632461..633780) 1 NC_012751.1 COG1114; branched-chain amino acid transport system II (LIV-II) (LIVCS family) 633780 brnQ 7950241 brnQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) branched-chain amino acid transport system II (LIV-II) (LIVCS family) YP_002923527.1 632461 R 340054 CDS YP_002923528.1 238897849 7950242 634391..636121 1 NC_012751.1 COG0018; arginine tRNA synthetase 636121 argS 7950242 argS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine tRNA synthetase YP_002923528.1 634391 D 340054 CDS YP_002923529.1 238897850 7950243 complement(636128..637663) 1 NC_012751.1 COG0728; virulence factor 637663 mviN 7950243 mviN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) virulence factor YP_002923529.1 636128 R 340054 CDS YP_002923530.1 238897851 7950244 638394..639200 1 NC_012751.1 COG0708; exonuclease III 639200 xthA 7950244 xthA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease III YP_002923530.1 638394 D 340054 CDS YP_002923531.1 238897852 7950245 639254..641098 1 NC_012751.1 COG0616; protease IV, a signal peptide peptidase 641098 sppA 7950245 sppA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protease IV, a signal peptide peptidase YP_002923531.1 639254 D 340054 CDS YP_002923532.1 238897853 7950246 641391..641606 1 NC_012751.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 641606 rpsU 7950246 rpsU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S21 YP_002923532.1 641391 D 340054 CDS YP_002923533.1 238897854 7950247 641800..643557 1 NC_012751.1 COG0358; DNA biosynthesis; DNA primase 643557 dnaG 7950247 dnaG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA biosynthesis; DNA primase YP_002923533.1 641800 D 340054 CDS YP_002923534.1 238897855 7950248 643712..645544 1 NC_012751.1 COG0568; RNA polymerase, sigma 70 (sigma D) factor 645544 rpoD 7950248 rpoD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase, sigma 70 (sigma D) factor YP_002923534.1 643712 D 340054 CDS YP_002923535.1 238897856 7950249 645671..647146 1 NC_012751.1 COG0364; glucose-6-phosphate dehydrogenase 647146 zwf 7950249 zwf Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glucose-6-phosphate dehydrogenase YP_002923535.1 645671 D 340054 CDS YP_002923536.1 238897857 7950250 complement(647258..647401) 1 NC_012751.1 hypothetical protein 647401 7950250 HDEF_0647 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923536.1 647258 R 340054 CDS YP_002923537.1 238897858 7950251 complement(647413..647832) 1 NC_012751.1 C terminal truncation; transcriptional regulator 647832 7950251 HDEF_0648 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923537.1 647413 R 340054 CDS YP_002923538.1 238897859 7950252 complement(648347..649135) 1 NC_012751.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component 649135 znuB 7950252 znuB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) high-affinity zinc transporter membrane component YP_002923538.1 648347 R 340054 CDS YP_002923539.1 238897860 7950253 complement(649128..649874) 1 NC_012751.1 COG1121; zinc ABC transporter ATP-binding protein 649874 znuC 7950253 znuC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) zinc ABC transporter ATP-binding protein YP_002923539.1 649128 R 340054 CDS YP_002923540.1 238897861 7950254 649944..650864 1 NC_012751.1 COG4531; high-affinity Zn transport protein (ABC superfamily, peri_bind) 650864 znuA 7950254 znuA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) high-affinity Zn transport protein (ABC superfamily, peri_bind) YP_002923540.1 649944 D 340054 CDS YP_002923541.1 238897862 7950255 650947..652197 1 NC_012751.1 COG0739; M23 peptidase family protein 652197 7950255 HDEF_0652 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) M23 peptidase family protein YP_002923541.1 650947 D 340054 CDS YP_002923542.1 238897863 7950256 652230..653189 1 NC_012751.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 653189 lpxM 7950256 lpxM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_002923542.1 652230 D 340054 CDS YP_002923543.1 238897864 7950257 653354..653845 1 NC_012751.1 COG0494; dinucleoside polyphosphate hydrolase 653845 rppH 7950257 rppH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dinucleoside polyphosphate hydrolase YP_002923543.1 653354 D 340054 CDS YP_002923544.1 238897865 7950258 653865..654875 1 NC_012751.1 COG0167; dihydroorotate oxidase, FMN-linked 654875 pyrD 7950258 pyrD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydroorotate oxidase, FMN-linked YP_002923544.1 653865 D 340054 CDS YP_002923545.1 238897866 7950260 655346..657493 1 NC_012751.1 COG0116,COG1092; 23S rRNA m(2)G2445 methyltransferase 657493 7950260 HDEF_0657 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 23S rRNA m(2)G2445 methyltransferase YP_002923545.1 655346 D 340054 CDS YP_002923546.1 238897867 7950261 657484..659409 1 NC_012751.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 659409 uup 7950261 uup Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter ATPase YP_002923546.1 657484 D 340054 CDS YP_002923547.1 238897868 7950262 complement(659771..659980) 1 NC_012751.1 hypothetical protein 659980 7950262 HDEF_0659 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923547.1 659771 R 340054 CDS YP_002923548.1 238897869 7950263 660223..660327 1 NC_012751.1 hypothetical protein 660327 7950263 HDEF_0660 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923548.1 660223 D 340054 CDS YP_002923549.1 238897870 7950264 complement(660260..660427) 1 NC_012751.1 hypothetical protein 660427 7950264 HDEF_0661 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923549.1 660260 R 340054 CDS YP_002923550.1 238897871 7950265 complement(660437..660580) 1 NC_012751.1 hypothetical protein 660580 7950265 HDEF_0662 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923550.1 660437 R 340054 CDS YP_002923551.1 238897872 7950266 660826..660948 1 NC_012751.1 hypothetical protein 660948 7950266 HDEF_0663 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923551.1 660826 D 340054 CDS YP_002923552.1 238897873 7950267 660969..661424 1 NC_012751.1 Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 661424 slyA 7950267 slyA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator SlyA YP_002923552.1 660969 D 340054 CDS YP_002923553.1 238897874 7950270 complement(662757..663287) 1 NC_012751.1 hypothetical protein 663287 7950270 HDEF_0667 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923553.1 662757 R 340054 CDS YP_002923554.1 238897875 7950271 complement(663432..663551) 1 NC_012751.1 hypothetical protein 663551 7950271 HDEF_0668 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923554.1 663432 R 340054 CDS YP_002923555.1 238897876 7950272 complement(663577..664047) 1 NC_012751.1 COG3133; outer membrane lipoprotein 664047 slyB 7950272 slyB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane lipoprotein YP_002923555.1 663577 R 340054 CDS YP_002923556.1 238897877 7950273 664215..664877 1 NC_012751.1 COG0259; pyridoxine 5'-phosphate oxidase 664877 pdxH 7950273 pdxH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyridoxine 5'-phosphate oxidase YP_002923556.1 664215 D 340054 CDS YP_002923557.1 238897878 7950274 664967..666241 1 NC_012751.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 666241 tyrS 7950274 tyrS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tyrosyl-tRNA synthetase YP_002923557.1 664967 D 340054 CDS YP_002923558.1 238897879 7950275 666254..668149 1 NC_012751.1 COG0768; cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) 668149 mrdA 7950275 mrdA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) YP_002923558.1 666254 D 340054 CDS YP_002923559.1 238897880 7950276 668155..669270 1 NC_012751.1 COG0772; cell wall shape-determining protein 669270 mrdB 7950276 mrdB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell wall shape-determining protein YP_002923559.1 668155 D 340054 CDS YP_002923560.1 238897881 7950277 669380..670534 1 NC_012751.1 COG1686; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 670534 dacA 7950277 dacA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 YP_002923560.1 669380 D 340054 CDS YP_002923561.1 238897882 7950278 670559..670822 1 NC_012751.1 COG2921; hypothetical protein 670822 7950278 HDEF_0675 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923561.1 670559 D 340054 CDS YP_002923562.1 238897883 7950279 670835..671527 1 NC_012751.1 COG0321; lipoyl(octanyl)-acyl carrier protein: protein transferase 671527 lipB 7950279 lipB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoyl(octanyl)-acyl carrier protein: protein transferase YP_002923562.1 670835 D 340054 CDS YP_002923563.1 238897884 7950280 671563..672513 1 NC_012751.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 672513 lipA 7950280 lipA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoyl synthase YP_002923563.1 671563 D 340054 CDS YP_002923564.1 238897885 7950281 672695..674098 1 NC_012751.1 COG0305; replicative DNA helicase; chromosome replication; chain elongation 674098 dnaB 7950281 dnaB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) replicative DNA helicase; chromosome replication; chain elongation YP_002923564.1 672695 D 340054 CDS YP_002923565.1 238897886 7950282 674117..675193 1 NC_012751.1 COG0787; alanine racemase 1, PLP-binding, biosynthetic 675193 alr 7950282 alr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) alanine racemase 1, PLP-binding, biosynthetic YP_002923565.1 674117 D 340054 CDS YP_002923566.1 238897887 7950283 675342..676832 1 NC_012751.1 COG0833; lysine transporter 676832 lysP 7950283 lysP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lysine transporter YP_002923566.1 675342 D 340054 CDS YP_002923567.1 238897888 7950284 676911..678263 1 NC_012751.1 COG0531; amino acid transport protein (APC family) 678263 yeeF 7950284 yeeF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) amino acid transport protein (APC family) YP_002923567.1 676911 D 340054 CDS YP_002923568.1 238897889 7950285 complement(678355..678819) 1 NC_012751.1 COG0328; RNase HI, degrades RNA of DNA-RNA hybrids 678819 rnhA 7950285 rnhA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase HI, degrades RNA of DNA-RNA hybrids YP_002923568.1 678355 R 340054 CDS YP_002923569.1 238897890 7950286 678882..679607 1 NC_012751.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 679607 dnaQ_1 7950286 dnaQ_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III subunit epsilon YP_002923569.1 678882 D 340054 CDS YP_002923570.1 238897891 7950292 680534..680650 1 NC_012751.1 hypothetical protein 680650 7950292 HDEF_0689 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923570.1 680534 D 340054 CDS YP_002923571.1 238897892 7950293 680709..680834 1 NC_012751.1 hypothetical protein 680834 7950293 HDEF_0690 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923571.1 680709 D 340054 CDS YP_002923572.1 238897893 7950294 680960..682027 1 NC_012751.1 COG0150; phosphoribosylaminoimidazole synthetase (AIR synthetase) 682027 purM 7950294 purM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylaminoimidazole synthetase (AIR synthetase) YP_002923572.1 680960 D 340054 CDS YP_002923573.1 238897894 7950295 682038..682700 1 NC_012751.1 COG0299; phosphoribosylglycinamide formyltransferase 1 682700 purN 7950295 purN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylglycinamide formyltransferase 1 YP_002923573.1 682038 D 340054 CDS YP_002923574.1 238897895 7950296 682688..683236 1 NC_012751.1 COG1670; spermidine N1-acetyltransferase 683236 speG 7950296 speG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) spermidine N1-acetyltransferase YP_002923574.1 682688 D 340054 CDS YP_002923575.1 238897896 7950297 683280..684566 1 NC_012751.1 COG0128; 3-enolpyruvylshikimate-5-phosphate synthetase 684566 aroA 7950297 aroA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-enolpyruvylshikimate-5-phosphate synthetase YP_002923575.1 683280 D 340054 CDS YP_002923576.1 238897897 7950298 684601..685281 1 NC_012751.1 COG0283; cytidine monophosphate (CMP) kinase 685281 cmk 7950298 cmk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytidine monophosphate (CMP) kinase YP_002923576.1 684601 D 340054 CDS YP_002923577.1 238897898 7950299 685401..687095 1 NC_012751.1 COG0539; 30S ribosomal subunit protein S1 687095 rpsA 7950299 rpsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S1 YP_002923577.1 685401 D 340054 CDS YP_002923578.1 238897899 7950300 687143..687430 1 NC_012751.1 COG0776; integration host factor (IHF), DNA-binding protein, beta subunit 687430 ihfB 7950300 ihfB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integration host factor (IHF), DNA-binding protein, beta subunit YP_002923578.1 687143 D 340054 CDS YP_002923579.1 238897900 7950301 687766..687921 1 NC_012751.1 lipoprotein 687921 7950301 HDEF_0698 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein YP_002923579.1 687766 D 340054 CDS YP_002923580.1 238897901 7950302 687934..688770 1 NC_012751.1 COG0253; diaminopimelate epimerase 688770 dapF 7950302 dapF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) diaminopimelate epimerase YP_002923580.1 687934 D 340054 CDS YP_002923581.1 238897902 7950303 688820..691015 1 NC_012751.1 COG0210; DNA-dependent ATPase I and helicase II 691015 uvrD 7950303 uvrD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-dependent ATPase I and helicase II YP_002923581.1 688820 D 340054 CDS YP_002923582.1 238897903 7950304 complement(691398..691508) 1 NC_012751.1 hypothetical protein 691508 7950304 HDEF_0701 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923582.1 691398 R 340054 CDS YP_002923583.1 238897904 7950305 complement(691651..692133) 1 NC_012751.1 COG0691; trans-translation protein 692133 smpB 7950305 smpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) trans-translation protein YP_002923583.1 691651 R 340054 CDS YP_002923584.1 238897905 7950306 692230..693159 1 NC_012751.1 COG0181; hydroxymethylbilane synthase (porphobilinogen deaminase) 693159 hemC 7950306 hemC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hydroxymethylbilane synthase (porphobilinogen deaminase) YP_002923584.1 692230 D 340054 CDS YP_002923585.1 238897906 7950307 693168..693914 1 NC_012751.1 COG1587; uroporphyrinogen III synthase 693914 hemD 7950307 hemD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) uroporphyrinogen III synthase YP_002923585.1 693168 D 340054 CDS YP_002923586.1 238897907 7950308 693948..695036 1 NC_012751.1 COG2959; uroporphyrinogen III methylase 695036 hemX 7950308 hemX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) uroporphyrinogen III methylase YP_002923586.1 693948 D 340054 CDS YP_002923587.1 238897908 7950309 695039..695800 1 NC_012751.1 C terminal truncation; COG3071; protoheme IX synthesis protein 695800 hemY 7950309 hemY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protoheme IX synthesis protein YP_002923587.1 695039 D 340054 CDS YP_002923588.1 238897909 7950310 complement(696011..696121) 1 NC_012751.1 hypothetical protein 696121 7950310 HDEF_0707 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923588.1 696011 R 340054 CDS YP_002923589.1 238897910 7950311 696153..698435 1 NC_012751.1 C terminal truncation, possibly with HDEF_0709; hypothetical protein 698435 7950311 HDEF_0708 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923589.1 696153 D 340054 CDS YP_002923590.1 238897911 7950312 698380..699090 1 NC_012751.1 N terminal truncation, possibly with HDEF_0708; COG3468; hypothetical protein 699090 7950312 HDEF_0709 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923590.1 698380 D 340054 CDS YP_002923591.1 238897912 7950313 complement(699238..703461) 1 NC_012751.1 COG0086; RNA polymerase subunit beta' 703461 rpoC 7950313 rpoC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase subunit beta' YP_002923591.1 699238 R 340054 CDS YP_002923592.1 238897913 7950314 complement(703725..707750) 1 NC_012751.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 707750 rpoB 7950314 rpoB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-directed RNA polymerase subunit beta YP_002923592.1 703725 R 340054 CDS YP_002923593.1 238897914 7950315 complement(708189..708563) 1 NC_012751.1 COG0222; 50S ribosomal subunit protein L7/L12 708563 rplL 7950315 rplL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L7/L12 YP_002923593.1 708189 R 340054 CDS YP_002923594.1 238897915 7950316 complement(708616..709113) 1 NC_012751.1 COG0244; 50S ribosomal subunit protein L10 709113 rplJ 7950316 rplJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L10 YP_002923594.1 708616 R 340054 CDS YP_002923595.1 238897916 7950317 complement(709471..710172) 1 NC_012751.1 COG0081; 50S ribosomal protein L1 710172 rplA 7950317 rplA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L1 YP_002923595.1 709471 R 340054 CDS YP_002923596.1 238897917 7950318 complement(710177..710605) 1 NC_012751.1 COG0080; 50S ribosomal protein L11 710605 rplK 7950318 rplK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L11 YP_002923596.1 710177 R 340054 CDS YP_002923597.1 238897918 7950319 complement(710980..711519) 1 NC_012751.1 COG0250; component in transcription antitermination 711519 nusG 7950319 nusG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) component in transcription antitermination YP_002923597.1 710980 R 340054 CDS YP_002923598.1 238897919 7950320 complement(711521..711904) 1 NC_012751.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 711904 secE 7950320 secE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase subunit SecE YP_002923598.1 711521 R 340054 CDS YP_002923599.1 238897920 7950321 complement(711982..713166) 1 NC_012751.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 713166 tufB 7950321 tufB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) elongation factor Tu YP_002923599.1 711982 R 340054 CDS YP_002923600.1 238897921 7950322 complement(713252..715357) 1 NC_012751.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 715357 fusA 7950322 fusA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) elongation factor G YP_002923600.1 713252 R 340054 CDS YP_002923601.1 238897922 7950323 complement(715489..715959) 1 NC_012751.1 COG0049; 30S ribosomal protein S7 715959 rpsG 7950323 rpsG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S7 YP_002923601.1 715489 R 340054 CDS YP_002923602.1 238897923 7950324 complement(716057..716431) 1 NC_012751.1 COG0048; 30S ribosomal protein S12 716431 rpsL 7950324 rpsL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S12 YP_002923602.1 716057 R 340054 CDS YP_002923603.1 238897924 7950325 join(716749..717351,719697..720050) 1 NC_012751.1 interrupted by GII intron; COG0176; transaldolase B 720050 talB 7950325 talB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transaldolase B YP_002923603.1 716749 D 340054 CDS YP_002923605.1 238897925 7950326 complement(720077..720220) 1 NC_012751.1 hypothetical protein 720220 7950326 HDEF_0724 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923605.1 720077 R 340054 CDS YP_002923606.1 238897926 7950327 complement(720201..720980) 1 NC_012751.1 COG4582; hypothetical protein 720980 7950327 HDEF_0725 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923606.1 720201 R 340054 CDS YP_002923607.1 238897927 7951946 complement(720999..722681) 1 NC_012751.1 reverse transcriptase 722681 7951946 HDEF_0726 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923607.1 720999 R 340054 CDS YP_002923608.1 238897928 7950329 723104..724171 1 NC_012751.1 N terminal truncation; TrbC conjugal transfer protein 724171 trbC_1 7950329 trbC_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbC conjugal transfer protein YP_002923608.1 723104 D 340054 CDS YP_002923609.1 238897929 7950330 complement(724178..724729) 1 NC_012751.1 conjugal transfer fertility inhibition protein 724729 finO_1 7950330 finO_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) conjugal transfer fertility inhibition protein YP_002923609.1 724178 R 340054 CDS YP_002923610.1 238897930 7950331 complement(join(724751..725382,727762..727999)) 1 NC_012751.1 interrupted by GII intron; COG5464; hypothetical protein 727999 7950331 HDEF_0729 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923610.1 724751 R 340054 CDS YP_002923611.1 238897931 7950332 complement(728011..728370) 1 NC_012751.1 COG0776; HU, DNA-binding transcriptional regulator, alpha subunit-2 728370 hupA_2 7950332 hupA_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) HU, DNA-binding transcriptional regulator, alpha subunit-2 YP_002923611.1 728011 R 340054 CDS YP_002923612.1 238897932 7950334 complement(730394..730702) 1 NC_012751.1 MobB relaxase/mobilization protein 730702 mobB_2 7950334 mobB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002923612.1 730394 R 340054 CDS YP_002923613.1 238897933 7950335 731103..731387 1 NC_012751.1 MobC relaxase/mobilization protein 731387 mobC_2 7950335 mobC_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobC relaxase/mobilization protein YP_002923613.1 731103 D 340054 CDS YP_002923614.1 238897934 7950336 731395..731490 1 NC_012751.1 hypothetical protein 731490 7950336 HDEF_0735 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923614.1 731395 D 340054 CDS YP_002923615.1 238897935 7950337 complement(731500..731799) 1 NC_012751.1 hypothetical protein 731799 7950337 HDEF_0736 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923615.1 731500 R 340054 CDS YP_002923616.1 238897936 7950338 complement(731792..732427) 1 NC_012751.1 plasmid partition protein ParA-like protein 732427 7950338 HDEF_0737 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002923616.1 731792 R 340054 CDS YP_002923617.1 238897937 7950339 732680..732934 1 NC_012751.1 addiction module, HicA-related protein 732934 7950339 HDEF_0738 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, HicA-related protein YP_002923617.1 732680 D 340054 CDS YP_002923618.1 238897938 7950340 732931..733272 1 NC_012751.1 COG4226; addiction module, HicB-related protein 733272 7950340 HDEF_0739 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, HicB-related protein YP_002923618.1 732931 D 340054 CDS YP_002923619.1 238897939 7950341 complement(733323..733886) 1 NC_012751.1 COG1961; resolvase 733886 7950341 HDEF_0740 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002923619.1 733323 R 340054 CDS YP_002923620.1 238897940 7950342 734090..735100 1 NC_012751.1 integrase 735100 int_2 7950342 int_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integrase YP_002923620.1 734090 D 340054 CDS YP_002923621.1 238897941 7950343 complement(735291..735518) 1 NC_012751.1 hypothetical protein 735518 7950343 HDEF_0742 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923621.1 735291 R 340054 CDS YP_002923622.1 238897942 7950344 735921..736676 1 NC_012751.1 signal peptidase I 736676 7950344 HDEF_0743 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) signal peptidase I YP_002923622.1 735921 D 340054 CDS YP_002923623.1 238897943 7950345 736679..737272 1 NC_012751.1 hypothetical protein 737272 7950345 HDEF_0744 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923623.1 736679 D 340054 CDS YP_002923624.1 238897944 7950346 737889..738782 1 NC_012751.1 restriction endonuclease 738782 7950346 HDEF_0745 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) restriction endonuclease YP_002923624.1 737889 D 340054 CDS YP_002923625.1 238897945 7950348 741559..741984 1 NC_012751.1 COG0105; multifunctional: nucleoside diphosphate kinase; apyrimidinic endonuclease; 3'-phosphodiesterase 741984 ndk 7950348 ndk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multifunctional: nucleoside diphosphate kinase; apyrimidinic endonuclease; 3'-phosphodiesterase YP_002923625.1 741559 D 340054 CDS YP_002923626.1 238897946 7950349 741962..742111 1 NC_012751.1 hypothetical protein 742111 7950349 HDEF_0748 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923626.1 741962 D 340054 CDS YP_002923627.1 238897947 7950350 742047..743228 1 NC_012751.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 743228 7950350 HDEF_0749 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribosomal RNA large subunit methyltransferase N YP_002923627.1 742047 D 340054 CDS YP_002923628.1 238897948 7950351 743326..744072 1 NC_012751.1 COG3063; PilF type IV pilus biogenesis/stability protein 744072 pilF 7950351 pilF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilF type IV pilus biogenesis/stability protein YP_002923628.1 743326 D 340054 CDS YP_002923629.1 238897949 7950353 744743..745855 1 NC_012751.1 COG0821; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 745855 ispG 7950353 ispG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_002923629.1 744743 D 340054 CDS YP_002923630.1 238897950 7950354 745878..747167 1 NC_012751.1 COG0124; histidine tRNA synthetase 747167 hisS 7950354 hisS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) histidine tRNA synthetase YP_002923630.1 745878 D 340054 CDS YP_002923631.1 238897951 7950355 747191..747814 1 NC_012751.1 COG2976; hypothetical protein 747814 7950355 HDEF_0754 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923631.1 747191 D 340054 CDS YP_002923632.1 238897952 7950356 747826..749013 1 NC_012751.1 with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 749013 yfgL 7950356 yfgL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protein assembly complex subunit YfgL YP_002923632.1 747826 D 340054 CDS YP_002923633.1 238897953 7950357 749169..750659 1 NC_012751.1 COG1160; GTP-binding protein 750659 engA 7950357 engA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTP-binding protein YP_002923633.1 749169 D 340054 CDS YP_002923634.1 238897954 7950358 750770..750871 1 NC_012751.1 hypothetical protein 750871 7950358 HDEF_0757 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923634.1 750770 D 340054 CDS YP_002923635.1 238897955 7950359 complement(750868..751062) 1 NC_012751.1 hypothetical protein 751062 7950359 HDEF_0758 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923635.1 750868 R 340054 CDS YP_002923636.1 238897956 7950361 complement(751786..751914) 1 NC_012751.1 hypothetical protein 751914 7950361 HDEF_0760 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923636.1 751786 R 340054 CDS YP_002923637.1 238897957 7950362 complement(751874..751975) 1 NC_012751.1 hypothetical protein 751975 7950362 HDEF_0761 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923637.1 751874 R 340054 CDS YP_002923638.1 238897958 7950363 751991..752194 1 NC_012751.1 hypothetical protein 752194 7950363 HDEF_0762 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923638.1 751991 D 340054 CDS YP_002923639.1 238897959 7950364 complement(752014..752199) 1 NC_012751.1 hypothetical protein 752199 7950364 HDEF_0763 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923639.1 752014 R 340054 CDS YP_002923640.1 238897960 7950365 752711..754369 1 NC_012751.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 754369 glnS 7950365 glnS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutaminyl-tRNA synthetase YP_002923640.1 752711 D 340054 CDS YP_002923641.1 238897961 7950366 754436..756073 1 NC_012751.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 756073 pyrG 7950366 pyrG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CTP synthetase YP_002923641.1 754436 D 340054 CDS YP_002923642.1 238897962 7950367 756150..757451 1 NC_012751.1 COG0148; enolase 757451 eno 7950367 eno Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) enolase YP_002923642.1 756150 D 340054 CDS YP_002923643.1 238897963 7950368 757555..758265 1 NC_012751.1 COG0603; queuosine biosynthesis protein 758265 queC 7950368 queC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) queuosine biosynthesis protein YP_002923643.1 757555 D 340054 CDS YP_002923644.1 238897964 7950369 758383..759216 1 NC_012751.1 COG3115; cell division protein involved in FtsK recruitment to Z ring 759216 zipA 7950369 zipA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein involved in FtsK recruitment to Z ring YP_002923644.1 758383 D 340054 CDS YP_002923645.1 238897965 7950370 759213..761321 1 NC_012751.1 COG0272; DNA ligase 761321 ligA 7950370 ligA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA ligase YP_002923645.1 759213 D 340054 CDS YP_002923646.1 238897966 7950371 complement(761398..762483) 1 NC_012751.1 acyltransferase 762483 7950371 HDEF_0770 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acyltransferase YP_002923646.1 761398 R 340054 CDS YP_002923647.1 238897967 7950373 complement(764029..767844) 1 NC_012751.1 COG2911; hypothetical protein 767844 7950373 HDEF_0772 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923647.1 764029 R 340054 CDS YP_002923648.1 238897968 7950374 complement(767841..769538) 1 NC_012751.1 COG0729; outer membrane protein 769538 7950374 HDEF_0773 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protein YP_002923648.1 767841 R 340054 CDS YP_002923649.1 238897969 7950375 complement(769590..770417) 1 NC_012751.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 770417 apaH 7950375 apaH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) diadenosine tetraphosphatase YP_002923649.1 769590 R 340054 CDS YP_002923650.1 238897970 7950376 complement(770476..771279) 1 NC_012751.1 COG0030; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance 771279 ksgA 7950376 ksgA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance YP_002923650.1 770476 R 340054 CDS YP_002923651.1 238897971 7950377 complement(771269..772267) 1 NC_012751.1 COG1995; NAD-dependent dehydrogenase/carboxylase, pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit 772267 pdxA 7950377 pdxA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NAD-dependent dehydrogenase/carboxylase, pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit YP_002923651.1 771269 R 340054 CDS YP_002923652.1 238897972 7950378 complement(772257..773225) 1 NC_012751.1 involved in maturation of outer membrane proteins; COG0760; peptidyl-prolyl cis-trans isomerase 773225 surA 7950378 surA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidyl-prolyl cis-trans isomerase YP_002923652.1 772257 R 340054 CDS YP_002923653.1 238897973 7950379 complement(773326..775668) 1 NC_012751.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 775668 imp 7950379 imp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) organic solvent tolerance protein YP_002923653.1 773326 R 340054 CDS YP_002923654.1 238897974 7950380 775735..775833 1 NC_012751.1 hypothetical protein 775833 7950380 HDEF_0779 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923654.1 775735 D 340054 CDS YP_002923655.1 238897975 7950381 776063..777178 1 NC_012751.1 COG0111; erythronate-4-phosphate dehydrogenase 777178 pdxB 7950381 pdxB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) erythronate-4-phosphate dehydrogenase YP_002923655.1 776063 D 340054 CDS YP_002923656.1 238897976 7950382 777260..778267 1 NC_012751.1 COG0136; semialdehyde dehydrogenase 778267 7950382 HDEF_0781 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) semialdehyde dehydrogenase YP_002923656.1 777260 D 340054 CDS YP_002923657.1 238897977 7950383 778267..779100 1 NC_012751.1 COG0101; pseudouridylate synthase I 779100 truA 7950383 truA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pseudouridylate synthase I YP_002923657.1 778267 D 340054 CDS YP_002923658.1 238897978 7950384 779161..779829 1 NC_012751.1 COG0586; integral membrane protein 779829 dedA 7950384 dedA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integral membrane protein YP_002923658.1 779161 D 340054 CDS YP_002923659.1 238897979 7950385 779875..780777 1 NC_012751.1 COG0777; acetylCoA carboxylase, carboxyltranferase subunit beta 780777 accD 7950385 accD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetylCoA carboxylase, carboxyltranferase subunit beta YP_002923659.1 779875 D 340054 CDS YP_002923660.1 238897980 7950386 780929..782215 1 NC_012751.1 COG0285; bifunctional folylpolyglutamate synthase; dihydrofolate synthase 782215 folC 7950386 folC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional folylpolyglutamate synthase; dihydrofolate synthase YP_002923660.1 780929 D 340054 CDS YP_002923661.1 238897981 7950387 782205..782759 1 NC_012751.1 COG3147; hypothetical protein 782759 7950387 HDEF_0786 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923661.1 782205 D 340054 CDS YP_002923662.1 238897982 7950388 782807..783316 1 NC_012751.1 COG1286; colicin V production protein 783316 7950388 HDEF_0787 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) colicin V production protein YP_002923662.1 782807 D 340054 CDS YP_002923663.1 238897983 7950389 783331..784845 1 NC_012751.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 784845 purF 7950389 purF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) amidophosphoribosyltransferase YP_002923663.1 783331 D 340054 CDS YP_002923664.1 238897984 7950390 784861..785439 1 NC_012751.1 COG0163; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 785439 ubiX 7950390 ubiX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002923664.1 784861 D 340054 CDS YP_002923665.1 238897985 7950391 785488..785928 1 NC_012751.1 COG0607; sulfurtransferase 785928 7950391 HDEF_0790 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sulfurtransferase YP_002923665.1 785488 D 340054 CDS YP_002923666.1 238897986 7950392 785978..786466 1 NC_012751.1 COG1952; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) 786466 secB 7950392 secB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) YP_002923666.1 785978 D 340054 CDS YP_002923667.1 238897987 7950393 786468..788309 1 NC_012751.1 COG1045,COG0240; fusion of serine acetyltransferase; glycerol-3-phosphate dehydrogenase (NAD+) 788309 7950393 HDEF_0792 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fusion of serine acetyltransferase; glycerol-3-phosphate dehydrogenase (NAD+) YP_002923667.1 786468 D 340054 CDS YP_002923668.1 238897988 7950394 788499..788891 1 NC_012751.1 COG2960; hypothetical protein 788891 7950394 HDEF_0793 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923668.1 788499 D 340054 CDS YP_002923669.1 238897989 7950395 complement(788900..790330) 1 NC_012751.1 COG2870; bifunctional ADP-L-glycero-D-manno-heptose synthase: kinase (N-terminal); sugar nucleotide transferase (C-terminal) 790330 rfaE 7950395 rfaE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional ADP-L-glycero-D-manno-heptose synthase: kinase (N-terminal); sugar nucleotide transferase (C-terminal) YP_002923669.1 788900 R 340054 CDS YP_002923670.1 238897990 7950396 complement(790435..790887) 1 NC_012751.1 COG0359; 50S ribosomal subunit protein L9 790887 rplI 7950396 rplI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L9 YP_002923670.1 790435 R 340054 CDS YP_002923671.1 238897991 7951948 complement(791012..792694) 1 NC_012751.1 reverse transcriptase 792694 7951948 HDEF_0796 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923671.1 791012 R 340054 CDS YP_002923672.1 238897992 7950399 793960..794571 1 NC_012751.1 COG2834; periplasmic chaperone effects translocation of lipoproteins from inner membrane to outer membrane 794571 lolA 7950399 lolA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) periplasmic chaperone effects translocation of lipoproteins from inner membrane to outer membrane YP_002923672.1 793960 D 340054 CDS YP_002923673.1 238897993 7950400 794740..796638 1 NC_012751.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 796638 parE 7950400 parE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA topoisomerase IV subunit B YP_002923673.1 794740 D 340054 CDS YP_002923674.1 238897994 7950401 796722..797747 1 NC_012751.1 LD-carboxypeptidase family protein 797747 7950401 HDEF_0800 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) LD-carboxypeptidase family protein YP_002923674.1 796722 D 340054 CDS YP_002923675.1 238897995 7950402 797931..800168 1 NC_012751.1 COG0188; DNA topoisomerase IV, subunit A 800168 parC 7950402 parC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA topoisomerase IV, subunit A YP_002923675.1 797931 D 340054 CDS YP_002923676.1 238897996 7950403 800229..800966 1 NC_012751.1 COG0204; 1-acyl-sn-glycerol-3-phosphate acyltransferase 800966 plsC 7950403 plsC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002923676.1 800229 D 340054 CDS YP_002923677.1 238897997 7950404 complement(801073..802485) 1 NC_012751.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 802485 pykF 7950404 pykF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyruvate kinase YP_002923677.1 801073 R 340054 CDS YP_002923678.1 238897998 7950405 complement(802799..802906) 1 NC_012751.1 hypothetical protein 802906 7950405 HDEF_0804 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923678.1 802799 R 340054 CDS YP_002923679.1 238897999 7950406 complement(802994..803380) 1 NC_012751.1 COG1555; hypothetical protein 803380 7950406 HDEF_0805 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923679.1 802994 R 340054 CDS YP_002923680.1 238898000 7950407 complement(803528..805402) 1 NC_012751.1 COG0760; peptidyl-prolyl cis-trans isomerase (rotamase D) 805402 7950407 HDEF_0806 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidyl-prolyl cis-trans isomerase (rotamase D) YP_002923680.1 803528 R 340054 CDS YP_002923681.1 238898001 7950408 complement(805490..807919) 1 NC_012751.1 COG0466; DNA-binding ATP-dependent protease La; heat shock K-protein 807919 lon 7950408 lon Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding ATP-dependent protease La; heat shock K-protein YP_002923681.1 805490 R 340054 CDS YP_002923682.1 238898002 7950409 complement(808213..809523) 1 NC_012751.1 COG1219; ATPase, chaperone subunit of serine protease 809523 clpX 7950409 clpX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATPase, chaperone subunit of serine protease YP_002923682.1 808213 R 340054 CDS YP_002923683.1 238898003 7950410 complement(809566..810213) 1 NC_012751.1 COG0740; proteolytic subunit of clpA-clpP ATP-dependent serine protease 810213 clpP 7950410 clpP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) proteolytic subunit of clpA-clpP ATP-dependent serine protease YP_002923683.1 809566 R 340054 CDS YP_002923684.1 238898004 7950411 complement(810361..811683) 1 NC_012751.1 COG0544; peptidyl-prolyl cis/trans isomerase 811683 tig 7950411 tig Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidyl-prolyl cis/trans isomerase YP_002923684.1 810361 R 340054 CDS YP_002923685.1 238898005 7950412 complement(811996..812124) 1 NC_012751.1 hypothetical protein 812124 7950412 HDEF_0811 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923685.1 811996 R 340054 CDS YP_002923686.1 238898006 7950417 812867..813001 1 NC_012751.1 hypothetical protein 813001 7950417 HDEF_0816 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923686.1 812867 D 340054 CDS YP_002923687.1 238898007 7950418 complement(812967..813884) 1 NC_012751.1 COG2264; methylation of 50S ribosomal subunit protein L11 813884 prmA 7950418 prmA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methylation of 50S ribosomal subunit protein L11 YP_002923687.1 812967 R 340054 CDS YP_002923688.1 238898008 7950419 complement(813860..815332) 1 NC_012751.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 815332 panF 7950419 panF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sodium/panthothenate symporter YP_002923688.1 813860 R 340054 CDS YP_002923689.1 238898009 7950420 complement(815329..815604) 1 NC_012751.1 COG3924; hypothetical protein 815604 7950420 HDEF_0819 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923689.1 815329 R 340054 CDS YP_002923690.1 238898010 7950421 815982..816518 1 NC_012751.1 hypothetical protein 816518 7950421 HDEF_0820 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923690.1 815982 D 340054 CDS YP_002923691.1 238898011 7950422 816578..816985 1 NC_012751.1 hypothetical protein 816985 7950422 HDEF_0821 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923691.1 816578 D 340054 CDS YP_002923692.1 238898012 7950423 817090..817677 1 NC_012751.1 COG0512; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex 817677 pabA 7950423 pabA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex YP_002923692.1 817090 D 340054 CDS YP_002923693.1 238898013 7950424 817821..818597 1 NC_012751.1 COG1560; lauroyl transferase 818597 lpxL 7950424 lpxL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lauroyl transferase YP_002923693.1 817821 D 340054 CDS YP_002923694.1 238898014 7950425 complement(818589..818774) 1 NC_012751.1 hypothetical protein 818774 7950425 HDEF_0824 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923694.1 818589 R 340054 CDS YP_002923695.1 238898015 7950427 819969..820178 1 NC_012751.1 COG1278; cold shock protein, transcription antiterminator, affects expression of rpoS and uspA 820178 cspC 7950427 cspC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cold shock protein, transcription antiterminator, affects expression of rpoS and uspA YP_002923695.1 819969 D 340054 CDS YP_002923696.1 238898016 7950428 complement(820347..821009) 1 NC_012751.1 COG0664; transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP 821009 crp 7950428 crp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP YP_002923696.1 820347 R 340054 CDS YP_002923697.1 238898017 7950429 821242..822903 1 NC_012751.1 COG0497; recombination and repair protein 822903 recN 7950429 recN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) recombination and repair protein YP_002923697.1 821242 D 340054 CDS YP_002923698.1 238898018 7950430 822959..823288 1 NC_012751.1 COG2913; hypothetical protein 823288 smpA 7950430 smpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923698.1 822959 D 340054 CDS YP_002923699.1 238898019 7950431 823373..824317 1 NC_012751.1 COG0196; bifunctional flavokinase; FAD synthetase 824317 ribF 7950431 ribF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional flavokinase; FAD synthetase YP_002923699.1 823373 D 340054 CDS YP_002923700.1 238898020 7950432 824345..827212 1 NC_012751.1 COG0060; isoleucine tRNA synthetase 827212 ileS 7950432 ileS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) isoleucine tRNA synthetase YP_002923700.1 824345 D 340054 CDS YP_002923701.1 238898021 7950433 827213..827731 1 NC_012751.1 COG0597; prolipoprotein signal peptidase (SPase II) 827731 lspA 7950433 lspA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) prolipoprotein signal peptidase (SPase II) YP_002923701.1 827213 D 340054 CDS YP_002923702.1 238898022 7950434 827733..828350 1 NC_012751.1 COG1047; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 828350 fkbP 7950434 fkbP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) YP_002923702.1 827733 D 340054 CDS YP_002923703.1 238898023 7950435 828331..829290 1 NC_012751.1 COG0761; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein 829290 ispH 7950435 ispH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein YP_002923703.1 828331 D 340054 CDS YP_002923704.1 238898024 7950436 829442..830908 1 NC_012751.1 hypothetical protein 830908 7950436 HDEF_0835 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923704.1 829442 D 340054 CDS YP_002923705.1 238898025 7950437 complement(831330..831734) 1 NC_012751.1 ISHde1, transposase 831734 7950437 HDEF_0836 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923705.1 831330 R 340054 CDS YP_002923706.1 238898026 7950438 complement(831775..832152) 1 NC_012751.1 ISHde1, transposase 832152 7950438 HDEF_0837 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923706.1 831775 R 340054 CDS YP_002923707.1 238898027 7950439 complement(832169..832423) 1 NC_012751.1 hypothetical protein 832423 7950439 HDEF_0839 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923707.1 832169 R 340054 CDS YP_002923708.1 238898028 7950441 832308..832550 1 NC_012751.1 hypothetical protein 832550 7950441 HDEF_0838 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923708.1 832308 D 340054 CDS YP_002923709.1 238898029 7950440 complement(832547..832648) 1 NC_012751.1 hypothetical protein 832648 7950440 HDEF_0840 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923709.1 832547 R 340054 CDS YP_002923710.1 238898030 7950442 832670..833743 1 NC_012751.1 catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 833743 rfaF 7950442 rfaF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ADP-heptose:LPS heptosyltransferase II YP_002923710.1 832670 D 340054 CDS YP_002923711.1 238898031 7950443 833753..834721 1 NC_012751.1 COG0859; ADP-heptose:LPS heptosyl transferase I 834721 rfaC 7950443 rfaC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ADP-heptose:LPS heptosyl transferase I YP_002923711.1 833753 D 340054 CDS YP_002923712.1 238898032 7950444 complement(834735..842768) 1 NC_012751.1 inner membrane protein 842768 7950444 HDEF_0843 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inner membrane protein YP_002923712.1 834735 R 340054 CDS YP_002923713.1 238898033 7950446 845953..852780 1 NC_012751.1 inner membrane protein 852780 7950446 HDEF_0845 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inner membrane protein YP_002923713.1 845953 D 340054 CDS YP_002923715.1 238898034 7951949 853831..855513 1 NC_012751.1 reverse transcriptase 855513 7951949 HDEF_0847 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923715.1 853831 D 340054 CDS YP_002923716.1 238898035 7950448 complement(861264..865793) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_0849; RTX-family protein-9 865793 rtxA_09 7950448 rtxA_09 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-9 YP_002923716.1 861264 R 340054 CDS YP_002923717.1 238898036 7950449 complement(865705..866589) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_0848; RTX-family protein-8 866589 rtxA_08 7950449 rtxA_08 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-8 YP_002923717.1 865705 R 340054 CDS YP_002923718.1 238898037 7950450 complement(866760..868256) 1 NC_012751.1 hypothetical protein 868256 7950450 HDEF_0850 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923718.1 866760 R 340054 CDS YP_002923719.1 238898038 7950451 868654..868758 1 NC_012751.1 hypothetical protein 868758 7950451 HDEF_0851 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923719.1 868654 D 340054 CDS YP_002923720.1 238898039 7950452 complement(868765..869043) 1 NC_012751.1 hypothetical protein 869043 7950452 HDEF_0852 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923720.1 868765 R 340054 CDS YP_002923721.1 238898040 7950453 complement(869040..869435) 1 NC_012751.1 COG5393; hypothetical protein 869435 7950453 HDEF_0853 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923721.1 869040 R 340054 CDS YP_002923722.1 238898041 7950454 complement(869440..869742) 1 NC_012751.1 COG4575; hypothetical protein 869742 7950454 HDEF_0854 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923722.1 869440 R 340054 CDS YP_002923723.1 238898042 7950455 complement(869896..870564) 1 NC_012751.1 COG0586; integral membrane protein 870564 yqjA 7950455 yqjA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integral membrane protein YP_002923723.1 869896 R 340054 CDS YP_002923724.1 238898043 7950456 870873..871859 1 NC_012751.1 COG0463; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 871859 arnC 7950456 arnC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase YP_002923724.1 870873 D 340054 CDS YP_002923725.1 238898044 7950457 871859..873871 1 NC_012751.1 Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 873871 arnA 7950457 arnA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase YP_002923725.1 871859 D 340054 CDS YP_002923726.1 238898045 7950458 873868..874767 1 NC_012751.1 COG0726; polysaccharide deacetylase 874767 arnD 7950458 arnD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) polysaccharide deacetylase YP_002923726.1 873868 D 340054 CDS YP_002923727.1 238898046 7950459 874772..876433 1 NC_012751.1 catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 876433 arnT 7950459 arnT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 4-amino-4-deoxy-L-arabinose transferase YP_002923727.1 874772 D 340054 CDS YP_002923728.1 238898047 7950460 876430..876765 1 NC_012751.1 COG0697; subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase 876765 arnE 7950460 arnE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase YP_002923728.1 876430 D 340054 CDS YP_002923729.1 238898048 7950461 876762..877157 1 NC_012751.1 COG0697; subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase 877157 arnF 7950461 arnF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase YP_002923729.1 876762 D 340054 CDS YP_002923730.1 238898049 7950462 complement(877192..879573) 1 NC_012751.1 bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b 879573 mrcB 7950462 mrcB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) penicillin-binding protein 1b YP_002923730.1 877192 R 340054 CDS YP_002923731.1 238898050 7950463 complement(879627..882518) 1 NC_012751.1 COG0749; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) 882518 polA 7950463 polA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) YP_002923731.1 879627 R 340054 CDS YP_002923732.1 238898051 7950464 complement(882855..883787) 1 NC_012751.1 hypothetical protein 883787 7950464 HDEF_0864 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923732.1 882855 R 340054 CDS YP_002923733.1 238898052 7950465 complement(884119..885123) 1 NC_012751.1 C terminal truncation; hypothetical protein 885123 7950465 HDEF_0865 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923733.1 884119 R 340054 CDS YP_002923734.1 238898053 7950466 complement(885396..886760) 1 NC_012751.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 886760 pssA 7950466 pssA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylserine synthase YP_002923734.1 885396 R 340054 CDS YP_002923735.1 238898054 7950467 complement(886913..887017) 1 NC_012751.1 hypothetical protein 887017 7950467 HDEF_0867 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923735.1 886913 R 340054 CDS YP_002923736.1 238898055 7950468 887064..888833 1 NC_012751.1 COG0173; aspartate tRNA synthetase 888833 aspS 7950468 aspS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aspartate tRNA synthetase YP_002923736.1 887064 D 340054 CDS YP_002923737.1 238898056 7950469 888884..889648 1 NC_012751.1 COG0217; hypothetical protein 889648 7950469 HDEF_0869 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923737.1 888884 D 340054 CDS YP_002923738.1 238898057 7950470 889654..890133 1 NC_012751.1 COG0817; Holliday junction nuclease 890133 ruvC 7950470 ruvC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Holliday junction nuclease YP_002923738.1 889654 D 340054 CDS YP_002923739.1 238898058 7950472 890553..890672 1 NC_012751.1 hypothetical protein 890672 7950472 HDEF_0872 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923739.1 890553 D 340054 CDS YP_002923740.1 238898059 7950473 891123..891779 1 NC_012751.1 COG3916; autoinducer synthase 891779 expI 7950473 expI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) autoinducer synthase YP_002923740.1 891123 D 340054 CDS YP_002923741.1 238898060 7950474 complement(891762..892493) 1 NC_012751.1 COG2771; autoinducer response regulator 892493 expR 7950474 expR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) autoinducer response regulator YP_002923741.1 891762 R 340054 CDS YP_002923742.1 238898061 7950475 complement(892560..896462) 1 NC_012751.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 896462 purL 7950475 purL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylformylglycinamidine synthase YP_002923742.1 892560 R 340054 CDS YP_002923743.1 238898062 7950476 complement(896606..899221) 1 NC_012751.1 COG0308; aminopeptidase N 899221 pepN 7950476 pepN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminopeptidase N YP_002923743.1 896606 R 340054 CDS YP_002923744.1 238898063 7950477 899394..900794 1 NC_012751.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 900794 asnC 7950477 asnC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) asparaginyl-tRNA synthetase YP_002923744.1 899394 D 340054 CDS YP_002923745.1 238898064 7950478 900781..901038 1 NC_012751.1 hypothetical protein 901038 7950478 HDEF_0878 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923745.1 900781 D 340054 CDS YP_002923746.1 238898065 7950479 complement(901021..901266) 1 NC_012751.1 hypothetical protein 901266 7950479 HDEF_0879 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923746.1 901021 R 340054 CDS YP_002923747.1 238898066 7950480 901715..901825 1 NC_012751.1 hypothetical protein 901825 7950480 HDEF_0880 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923747.1 901715 D 340054 CDS YP_002923748.1 238898067 7950481 901822..902016 1 NC_012751.1 hypothetical protein 902016 7950481 HDEF_0881 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923748.1 901822 D 340054 CDS YP_002923749.1 238898068 7950482 complement(901926..902042) 1 NC_012751.1 hypothetical protein 902042 7950482 HDEF_0882 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923749.1 901926 R 340054 CDS YP_002923750.1 238898069 7950483 complement(902151..903455) 1 NC_012751.1 N terminal truncation; hypothetical protein 903455 7950483 HDEF_0883 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923750.1 902151 R 340054 CDS YP_002923751.1 238898070 7950484 903750..903959 1 NC_012751.1 hypothetical protein 903959 7950484 HDEF_0884 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923751.1 903750 D 340054 CDS YP_002923752.1 238898071 7950485 903962..904237 1 NC_012751.1 COG4570; endonuclease RUS 904237 rus 7950485 rus Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) endonuclease RUS YP_002923752.1 903962 D 340054 CDS YP_002923753.1 238898072 7950486 904244..904339 1 NC_012751.1 hypothetical protein 904339 7950486 HDEF_0886 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923753.1 904244 D 340054 CDS YP_002923754.1 238898073 7950487 904453..904731 1 NC_012751.1 hypothetical protein 904731 7950487 HDEF_0887 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923754.1 904453 D 340054 CDS YP_002923755.1 238898074 7950488 complement(904728..904820) 1 NC_012751.1 hypothetical protein 904820 7950488 HDEF_0888 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923755.1 904728 R 340054 CDS YP_002923756.1 238898075 7950489 904838..905083 1 NC_012751.1 hypothetical protein 905083 7950489 HDEF_0889 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923756.1 904838 D 340054 CDS YP_002923757.1 238898076 7950490 905288..905626 1 NC_012751.1 phage holin 905626 7950490 HDEF_0890 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage holin YP_002923757.1 905288 D 340054 CDS YP_002923758.1 238898077 7950492 906110..906499 1 NC_012751.1 hypothetical protein 906499 7950492 HDEF_0892 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923758.1 906110 D 340054 CDS YP_002923759.1 238898078 7950495 907168..907536 1 NC_012751.1 hypothetical protein 907536 7950495 HDEF_0895 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923759.1 907168 D 340054 CDS YP_002923760.1 238898079 7950496 907692..907802 1 NC_012751.1 hypothetical protein 907802 7950496 HDEF_0896 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923760.1 907692 D 340054 CDS YP_002923761.1 238898080 7950497 907795..909684 1 NC_012751.1 hypothetical protein 909684 7950497 HDEF_0897 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923761.1 907795 D 340054 CDS YP_002923762.1 238898081 7950498 909687..910988 1 NC_012751.1 COG4228; Mu-like prophage DNA circulation protein 910988 7950498 HDEF_0898 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like prophage DNA circulation protein YP_002923762.1 909687 D 340054 CDS YP_002923763.1 238898082 7950501 912848..913759 1 NC_012751.1 N terminal truncation; COG3299; phage baseplate J-like protein 913759 7950501 HDEF_0901 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage baseplate J-like protein YP_002923763.1 912848 D 340054 CDS YP_002923764.1 238898083 7950503 914405..915106 1 NC_012751.1 phage tail collar protein 915106 7950503 HDEF_0903 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail collar protein YP_002923764.1 914405 D 340054 CDS YP_002923765.1 238898084 7950504 915111..915647 1 NC_012751.1 phage tail assembly chaperone 915647 7950504 HDEF_0904 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail assembly chaperone YP_002923765.1 915111 D 340054 CDS YP_002923766.1 238898085 7950505 complement(915716..915961) 1 NC_012751.1 hypothetical protein 915961 7950505 HDEF_0905 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923766.1 915716 R 340054 CDS YP_002923767.1 238898086 7950506 complement(916180..916881) 1 NC_012751.1 hypothetical protein 916881 7950506 HDEF_0906 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923767.1 916180 R 340054 CDS YP_002923768.1 238898087 7950507 917080..917214 1 NC_012751.1 hypothetical protein 917214 7950507 HDEF_0907 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923768.1 917080 D 340054 CDS YP_002923769.1 238898088 7950508 complement(917408..918613) 1 NC_012751.1 COG0270; DNA cytosine methylase 918613 dcm_1 7950508 dcm_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA cytosine methylase YP_002923769.1 917408 R 340054 CDS YP_002923770.1 238898089 7950510 918604..918717 1 NC_012751.1 hypothetical protein 918717 7950510 HDEF_0908 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923770.1 918604 D 340054 CDS YP_002923771.1 238898090 7950509 complement(918937..919587) 1 NC_012751.1 N terminal truncation; hypothetical protein 919587 7950509 HDEF_0910 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923771.1 918937 R 340054 CDS YP_002923772.1 238898091 7950512 920771..921160 1 NC_012751.1 N terminal truncation; COG5464; transposase 921160 7950512 HDEF_0912 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923772.1 920771 D 340054 CDS YP_002923773.1 238898092 7950513 921229..922113 1 NC_012751.1 NAD-dependent DNA ligase 922113 7950513 HDEF_0913 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NAD-dependent DNA ligase YP_002923773.1 921229 D 340054 CDS YP_002923774.1 238898093 7950514 922228..922812 1 NC_012751.1 hypothetical protein 922812 7950514 HDEF_0914 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923774.1 922228 D 340054 CDS YP_002923775.1 238898094 7950516 complement(923127..923690) 1 NC_012751.1 hypothetical protein 923690 7950516 HDEF_0916 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923775.1 923127 R 340054 CDS YP_002923776.1 238898095 7950517 complement(923737..924063) 1 NC_012751.1 phage repressor protein 924063 C_2 7950517 C_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage repressor protein YP_002923776.1 923737 R 340054 CDS YP_002923777.1 238898096 7950518 924262..924534 1 NC_012751.1 phage regulatory protein 924534 cox_2 7950518 cox_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage regulatory protein YP_002923777.1 924262 D 340054 CDS YP_002923778.1 238898097 7950519 924860..925294 1 NC_012751.1 single-strand DNA-binding protein 925294 7950519 HDEF_0919 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) single-strand DNA-binding protein YP_002923778.1 924860 D 340054 CDS YP_002923779.1 238898098 7950520 complement(925303..925623) 1 NC_012751.1 hypothetical protein 925623 7950520 HDEF_0920 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923779.1 925303 R 340054 CDS YP_002923780.1 238898099 7950521 925768..926622 1 NC_012751.1 hypothetical protein 926622 7950521 HDEF_0921 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923780.1 925768 D 340054 CDS YP_002923781.1 238898100 7950522 926738..927457 1 NC_012751.1 phage DNA-binding protein (Roi) 927457 7950522 HDEF_0922 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage DNA-binding protein (Roi) YP_002923781.1 926738 D 340054 CDS YP_002923782.1 238898101 7950524 929303..929656 1 NC_012751.1 hypothetical protein 929656 7950524 HDEF_0924 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923782.1 929303 D 340054 CDS YP_002923783.1 238898102 7950525 complement(929638..930102) 1 NC_012751.1 COG2801; ISHde4 transposase, orfB 930102 7950525 HDEF_0925 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfB YP_002923783.1 929638 R 340054 CDS YP_002923784.1 238898103 7950526 complement(930397..930654) 1 NC_012751.1 COG2963; ISHde4 transposase, orfA 930654 7950526 HDEF_0926 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfA YP_002923784.1 930397 R 340054 CDS YP_002923785.1 238898104 7950527 930825..931046 1 NC_012751.1 N terminal truncation; COG3316; transposase 931046 7950527 HDEF_0927 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923785.1 930825 D 340054 CDS YP_002923786.1 238898105 7950528 complement(931081..932652) 1 NC_012751.1 hypothetical protein 932652 7950528 HDEF_0928 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923786.1 931081 R 340054 CDS YP_002923787.1 238898106 7950530 complement(933036..933764) 1 NC_012751.1 N terminal truncation; ADP-ribosyltransferase toxin-1 933764 aexT_1 7950530 aexT_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ADP-ribosyltransferase toxin-1 YP_002923787.1 933036 R 340054 CDS YP_002923788.1 238898107 7950531 933990..934181 1 NC_012751.1 C terminal truncation; COG1961; resolvase 934181 7950531 HDEF_0931 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002923788.1 933990 D 340054 CDS YP_002923789.1 238898108 7950532 934216..934491 1 NC_012751.1 N and C terminal truncations; COG1961; resolvase 934491 7950532 HDEF_0932 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002923789.1 934216 D 340054 CDS YP_002923790.1 238898109 7950535 complement(936291..936695) 1 NC_012751.1 ISHde1, transposase 936695 7950535 HDEF_0935 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923790.1 936291 R 340054 CDS YP_002923791.1 238898110 7950536 complement(936736..937113) 1 NC_012751.1 ISHde1, transposase 937113 7950536 HDEF_0936 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923791.1 936736 R 340054 CDS YP_002923792.1 238898111 7950538 complement(938385..938600) 1 NC_012751.1 N terminal truncation; COG4644; Tn3-like transposase 938600 7950538 HDEF_0938 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Tn3-like transposase YP_002923792.1 938385 R 340054 CDS YP_002923793.1 238898112 7950539 938644..939009 1 NC_012751.1 ISHde2, transposase 939009 7950539 HDEF_0939 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923793.1 938644 D 340054 CDS YP_002923794.1 238898113 7950540 939150..939431 1 NC_012751.1 ISHde2, transposase 939431 7950540 HDEF_0940 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923794.1 939150 D 340054 CDS YP_002923795.1 238898114 7950541 939570..939770 1 NC_012751.1 hypothetical protein 939770 7950541 HDEF_0941 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923795.1 939570 D 340054 CDS YP_002923796.1 238898115 7950544 complement(942053..942340) 1 NC_012751.1 COG3514; hypothetical protein 942340 7950544 HDEF_0944 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923796.1 942053 R 340054 CDS YP_002923797.1 238898116 7950545 complement(942315..942593) 1 NC_012751.1 COG2929; hypothetical protein 942593 7950545 HDEF_0945 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923797.1 942315 R 340054 CDS YP_002923798.1 238898117 7950546 942662..943972 1 NC_012751.1 PilO type IV pilus biogenesis outer membrane protein 943972 pilO_1 7950546 pilO_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilO type IV pilus biogenesis outer membrane protein YP_002923798.1 942662 D 340054 CDS YP_002923799.1 238898118 7950547 943959..944369 1 NC_012751.1 PilP type IV pilus biogenesis/secretion protein 944369 pilP_1 7950547 pilP_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilP type IV pilus biogenesis/secretion protein YP_002923799.1 943959 D 340054 CDS YP_002923800.1 238898119 7950548 944366..945913 1 NC_012751.1 PilQ type IV pilus biogenesis protein ATPase 945913 pilQ_1 7950548 pilQ_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus biogenesis protein ATPase YP_002923800.1 944366 D 340054 CDS YP_002923801.1 238898120 7950549 945900..946964 1 NC_012751.1 PilR type IV pilus biosynthesis protein 946964 pilR_1 7950549 pilR_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilR type IV pilus biosynthesis protein YP_002923801.1 945900 D 340054 CDS YP_002923802.1 238898121 7950550 946975..947556 1 NC_012751.1 PilS2 type IV pilus biosynthesis protein 947556 pilS2_1 7950550 pilS2_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilS2 type IV pilus biosynthesis protein YP_002923802.1 946975 D 340054 CDS YP_002923803.1 238898122 7950551 complement(947596..947895) 1 NC_012751.1 COG3668; addiction module 947895 7950551 HDEF_0951 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002923803.1 947596 R 340054 CDS YP_002923804.1 238898123 7950552 complement(947883..948173) 1 NC_012751.1 COG3905; hypothetical protein 948173 7950552 HDEF_0952 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923804.1 947883 R 340054 CDS YP_002923805.1 238898124 7950553 948347..949615 1 NC_012751.1 PilV type IV pilus minor pilin subunit 949615 pilV_1 7950553 pilV_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilV type IV pilus minor pilin subunit YP_002923805.1 948347 D 340054 CDS YP_002923806.1 238898125 7950554 949665..950096 1 NC_012751.1 PilM type IV pilus biogenesis/secretion protein 950096 pilM_1 7950554 pilM_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilM type IV pilus biogenesis/secretion protein YP_002923806.1 949665 D 340054 CDS YP_002923807.1 238898126 7950555 950099..950719 1 NC_012751.1 hypothetical protein 950719 7950555 HDEF_0955 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923807.1 950099 D 340054 CDS YP_002923808.1 238898127 7950556 950762..951226 1 NC_012751.1 COG0741; twitching motility protein PilT 951226 pilT_2 7950556 pilT_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) twitching motility protein PilT YP_002923808.1 950762 D 340054 CDS YP_002923809.1 238898128 7950557 951294..951737 1 NC_012751.1 TraH conjugal transfer protein 951737 traH_1 7950557 traH_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraH conjugal transfer protein YP_002923809.1 951294 D 340054 CDS YP_002923810.1 238898129 7950558 951752..952540 1 NC_012751.1 TraI conjugal transfer protein 952540 traI_1 7950558 traI_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraI conjugal transfer protein YP_002923810.1 951752 D 340054 CDS YP_002923811.1 238898130 7950559 952527..953696 1 NC_012751.1 TraJ conjugal transfer protein 953696 traJ_1 7950559 traJ_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraJ conjugal transfer protein YP_002923811.1 952527 D 340054 CDS YP_002923812.1 238898131 7950560 complement(953691..954098) 1 NC_012751.1 hypothetical protein 954098 7950560 HDEF_0960 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923812.1 953691 R 340054 CDS YP_002923813.1 238898132 7950561 complement(954107..954349) 1 NC_012751.1 COG4456; hypothetical protein 954349 7950561 HDEF_0961 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923813.1 954107 R 340054 CDS YP_002923814.1 238898133 7950562 954455..954715 1 NC_012751.1 TraK conjugal transfer protein 954715 traK_1 7950562 traK_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraK conjugal transfer protein YP_002923814.1 954455 D 340054 CDS YP_002923815.1 238898134 7950563 954733..957219 1 NC_012751.1 DNA primase TraC 957219 traC_1 7950563 traC_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA primase TraC YP_002923815.1 954733 D 340054 CDS YP_002923816.1 238898135 7950565 957505..957936 1 NC_012751.1 TraL conjugal transfer protein 957936 traL 7950565 traL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraL conjugal transfer protein YP_002923816.1 957505 D 340054 CDS YP_002923817.1 238898136 7950566 957961..958632 1 NC_012751.1 TraM conjugal transfer protein 958632 traM_1 7950566 traM_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraM conjugal transfer protein YP_002923817.1 957961 D 340054 CDS YP_002923818.1 238898137 7950567 958629..959633 1 NC_012751.1 TraN conjugal transfer protein 959633 traN 7950567 traN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraN conjugal transfer protein YP_002923818.1 958629 D 340054 CDS YP_002923819.1 238898138 7950568 959643..960818 1 NC_012751.1 TraO conjugal transfer protein 960818 traO 7950568 traO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraO conjugal transfer protein YP_002923819.1 959643 D 340054 CDS YP_002923820.1 238898139 7950569 960815..961231 1 NC_012751.1 hypothetical protein 961231 7950569 HDEF_0969 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923820.1 960815 D 340054 CDS YP_002923821.1 238898140 7950570 961224..964280 1 NC_012751.1 TraU conjugal transfer protein 964280 traU 7950570 traU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraU conjugal transfer protein YP_002923821.1 961224 D 340054 CDS YP_002923822.1 238898141 7950571 964338..965477 1 NC_012751.1 TraW conjugal transfer protein 965477 traW 7950571 traW Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraW conjugal transfer protein YP_002923822.1 964338 D 340054 CDS YP_002923823.1 238898142 7950572 965470..966018 1 NC_012751.1 TraX conjugal transfer protein 966018 traX 7950572 traX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraX conjugal transfer protein YP_002923823.1 965470 D 340054 CDS YP_002923824.1 238898143 7950574 968339..968977 1 NC_012751.1 surface exclusion protein 968977 7950574 HDEF_0974 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) surface exclusion protein YP_002923824.1 968339 D 340054 CDS YP_002923825.1 238898144 7950575 969054..969308 1 NC_012751.1 hypothetical protein 969308 7950575 HDEF_0975 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923825.1 969054 D 340054 CDS YP_002923826.1 238898145 7950576 969318..969734 1 NC_012751.1 COG1487; hypothetical protein 969734 7950576 HDEF_0976 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923826.1 969318 D 340054 CDS YP_002923827.1 238898146 7950577 969808..969993 1 NC_012751.1 hypothetical protein 969993 7950577 HDEF_0977 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923827.1 969808 D 340054 CDS YP_002923828.1 238898147 7950578 970063..971073 1 NC_012751.1 N and C terminal truncations; TrbA conjugal transfer protein 971073 trbA 7950578 trbA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbA conjugal transfer protein YP_002923828.1 970063 D 340054 CDS YP_002923829.1 238898148 7950579 971149..972081 1 NC_012751.1 TrbB conjugal transfer protein 972081 trbB 7950579 trbB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbB conjugal transfer protein YP_002923829.1 971149 D 340054 CDS YP_002923830.1 238898149 7950580 972074..973321 1 NC_012751.1 C terminal truncation; TrbC conjugal transfer protein 973321 trbC_2 7950580 trbC_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbC conjugal transfer protein YP_002923830.1 972074 D 340054 CDS YP_002923831.1 238898150 7951950 complement(973394..973858) 1 NC_012751.1 C terminus, interrupted by GII intron; reverse transcriptase 973858 7951950 HDEF_0981 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923831.1 973394 R 340054 CDS YP_002923832.1 238898151 7951951 974478..976160 1 NC_012751.1 reverse transcriptase 976160 7951951 HDEF_0982 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923832.1 974478 D 340054 CDS YP_002923833.1 238898152 7950583 complement(976237..977421) 1 NC_012751.1 N terminus, interrupted by GII intron; reverse transcriptase 977421 7950583 HDEF_0983 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923833.1 976237 R 340054 CDS YP_002923834.1 238898153 7951952 complement(977967..978500) 1 NC_012751.1 C terminal truncation; DNA biosynthesis protein 978500 dnaC 7951952 dnaC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA biosynthesis protein YP_002923834.1 977967 R 340054 CDS YP_002923835.1 238898154 7950585 complement(978497..979402) 1 NC_012751.1 phage replication protein 979402 O_2 7950585 O_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage replication protein YP_002923835.1 978497 R 340054 CDS YP_002923836.1 238898155 7950586 complement(979395..979547) 1 NC_012751.1 hypothetical protein 979547 7950586 HDEF_0986 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923836.1 979395 R 340054 CDS YP_002923837.1 238898156 7950587 complement(979604..980191) 1 NC_012751.1 P4 phage ash-like protein 980191 7950587 HDEF_0987 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) P4 phage ash-like protein YP_002923837.1 979604 R 340054 CDS YP_002923838.1 238898157 7950588 complement(980328..980810) 1 NC_012751.1 hypothetical protein 980810 7950588 HDEF_0988 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923838.1 980328 R 340054 CDS YP_002923839.1 238898158 7950589 complement(980881..981105) 1 NC_012751.1 COG4197; hypothetical protein 981105 7950589 HDEF_0989 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923839.1 980881 R 340054 CDS YP_002923840.1 238898159 7950590 981228..981929 1 NC_012751.1 phage repressor 981929 7950590 HDEF_0990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage repressor YP_002923840.1 981228 D 340054 CDS YP_002923841.1 238898160 7950591 complement(982104..982307) 1 NC_012751.1 hypothetical protein 982307 7950591 HDEF_0991 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923841.1 982104 R 340054 CDS YP_002923842.1 238898161 7951953 982984..984666 1 NC_012751.1 reverse transcriptase 984666 7951953 HDEF_0992 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923842.1 982984 D 340054 CDS YP_002923843.1 238898162 7950593 complement(984743..985936) 1 NC_012751.1 hypothetical protein 985936 7950593 HDEF_0993 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923843.1 984743 R 340054 CDS YP_002923844.1 238898163 7950594 985951..986052 1 NC_012751.1 hypothetical protein 986052 7950594 HDEF_0994 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923844.1 985951 D 340054 CDS YP_002923845.1 238898164 7950595 986219..986428 1 NC_012751.1 hypothetical protein 986428 7950595 HDEF_0995 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923845.1 986219 D 340054 CDS YP_002923846.1 238898165 7950597 complement(986683..988017) 1 NC_012751.1 hypothetical protein 988017 7950597 HDEF_0997 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923846.1 986683 R 340054 CDS YP_002923847.1 238898166 7950598 988285..988506 1 NC_012751.1 hypothetical protein 988506 7950598 HDEF_0998 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923847.1 988285 D 340054 CDS YP_002923848.1 238898167 7950600 complement(989003..989407) 1 NC_012751.1 ISHde1, transposase 989407 7950600 HDEF_1000 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923848.1 989003 R 340054 CDS YP_002923849.1 238898168 7950601 complement(989448..989825) 1 NC_012751.1 ISHde1, transposase 989825 7950601 HDEF_1001 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923849.1 989448 R 340054 CDS YP_002923850.1 238898169 7950603 990267..990632 1 NC_012751.1 phage holin 990632 7950603 HDEF_1003 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage holin YP_002923850.1 990267 D 340054 CDS YP_002923851.1 238898170 7950605 990872..991954 1 NC_012751.1 COG0863; DNA methylase 991954 7950605 HDEF_1005 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA methylase YP_002923851.1 990872 D 340054 CDS YP_002923852.1 238898171 7950606 992025..992213 1 NC_012751.1 phage holin 992213 7950606 HDEF_1006 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage holin YP_002923852.1 992025 D 340054 CDS YP_002923853.1 238898172 7950607 992210..992707 1 NC_012751.1 COG3772; phage lysozyme 992707 7950607 HDEF_1007 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage lysozyme YP_002923853.1 992210 D 340054 CDS YP_002923854.1 238898173 7950608 complement(992826..993689) 1 NC_012751.1 hypothetical protein 993689 7950608 HDEF_1008 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923854.1 992826 R 340054 CDS YP_002923855.1 238898174 7950609 993779..993952 1 NC_012751.1 hypothetical protein 993952 7950609 HDEF_1009 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923855.1 993779 D 340054 CDS YP_002923856.1 238898175 7950610 993985..994455 1 NC_012751.1 phage lysis protein 994455 7950610 HDEF_1010 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage lysis protein YP_002923856.1 993985 D 340054 CDS YP_002923857.1 238898176 7950611 994436..994780 1 NC_012751.1 COG1403; phage HNH endonuclease 994780 7950611 HDEF_1011 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage HNH endonuclease YP_002923857.1 994436 D 340054 CDS YP_002923858.1 238898177 7950612 994617..994841 1 NC_012751.1 hypothetical protein 994841 7950612 HDEF_1012 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923858.1 994617 D 340054 CDS YP_002923859.1 238898178 7950613 complement(994782..995105) 1 NC_012751.1 COG3636; addiction module antitoxin 995105 7950613 HDEF_1013 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923859.1 994782 R 340054 CDS YP_002923860.1 238898179 7950614 complement(995109..995435) 1 NC_012751.1 COG3657; addiction module toxin 995435 7950614 HDEF_1014 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002923860.1 995109 R 340054 CDS YP_002923861.1 238898180 7950615 995635..996267 1 NC_012751.1 ISHde5, transposase 996267 7950615 HDEF_1015 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde5, transposase YP_002923861.1 995635 D 340054 CDS YP_002923862.1 238898181 7950616 complement(996298..996579) 1 NC_012751.1 ISHde2, transposase 996579 7950616 HDEF_1016 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923862.1 996298 R 340054 CDS YP_002923863.1 238898182 7950617 complement(996720..997085) 1 NC_012751.1 ISHde2, transposase 997085 7950617 HDEF_1017 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002923863.1 996720 R 340054 CDS YP_002923864.1 238898183 7950619 complement(997505..997930) 1 NC_012751.1 hypothetical protein 997930 7950619 HDEF_1019 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923864.1 997505 R 340054 CDS YP_002923865.1 238898184 7950620 complement(998021..998881) 1 NC_012751.1 COG2367; beta-lactamase 998881 7950620 HDEF_1020 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) beta-lactamase YP_002923865.1 998021 R 340054 CDS YP_002923866.1 238898185 7950621 complement(999191..999292) 1 NC_012751.1 hypothetical protein 999292 7950621 HDEF_1021 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923866.1 999191 R 340054 CDS YP_002923867.1 238898186 7950622 999550..999645 1 NC_012751.1 hypothetical protein 999645 7950622 HDEF_1022 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923867.1 999550 D 340054 CDS YP_002923868.1 238898187 7950623 999935..1000096 1 NC_012751.1 hypothetical protein 1000096 7950623 HDEF_1023 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923868.1 999935 D 340054 CDS YP_002923869.1 238898188 7950624 1000153..1000479 1 NC_012751.1 COG0393; hypothetical protein 1000479 7950624 HDEF_1024 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923869.1 1000153 D 340054 CDS YP_002923870.1 238898189 7950626 complement(1001248..1001385) 1 NC_012751.1 hypothetical protein 1001385 7950626 HDEF_1026 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923870.1 1001248 R 340054 CDS YP_002923871.1 238898190 7950627 complement(1001784..1002986) 1 NC_012751.1 pentapeptide repeat-containing protein 1002986 7950627 HDEF_1027 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pentapeptide repeat-containing protein YP_002923871.1 1001784 R 340054 CDS YP_002923872.1 238898191 7950629 complement(1003936..1004604) 1 NC_012751.1 N terminal truncation; plasmid replication initiator protein 1004604 repA_1 7950629 repA_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002923872.1 1003936 R 340054 CDS YP_002923873.1 238898192 7950631 complement(1006827..1007135) 1 NC_012751.1 MobB relaxase/mobilization protein 1007135 mobB_3 7950631 mobB_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002923873.1 1006827 R 340054 CDS YP_002923874.1 238898193 7950632 1007536..1007838 1 NC_012751.1 hypothetical protein 1007838 7950632 HDEF_1032 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923874.1 1007536 D 340054 CDS YP_002923875.1 238898194 7950633 complement(1007908..1008000) 1 NC_012751.1 hypothetical protein 1008000 7950633 HDEF_1033 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923875.1 1007908 R 340054 CDS YP_002923876.1 238898195 7950636 complement(1008927..1009337) 1 NC_012751.1 COG5499; transcriptional regulator 1009337 7950636 HDEF_1036 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923876.1 1008927 R 340054 CDS YP_002923877.1 238898196 7950637 complement(1009334..1009645) 1 NC_012751.1 COG4680; hypothetical protein 1009645 7950637 HDEF_1037 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923877.1 1009334 R 340054 CDS YP_002923878.1 238898197 7950638 1009869..1010504 1 NC_012751.1 plasmid partition protein ParA-like protein 1010504 7950638 HDEF_1038 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002923878.1 1009869 D 340054 CDS YP_002923879.1 238898198 7950639 1010498..1010755 1 NC_012751.1 hypothetical protein 1010755 7950639 HDEF_1039 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923879.1 1010498 D 340054 CDS YP_002923880.1 238898199 7950642 1012448..1012579 1 NC_012751.1 hypothetical protein 1012579 7950642 HDEF_1042 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923880.1 1012448 D 340054 CDS YP_002923881.1 238898200 7950644 1013234..1014103 1 NC_012751.1 hypothetical protein 1014103 7950644 HDEF_1044 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923881.1 1013234 D 340054 CDS YP_002923882.1 238898201 7950645 1014106..1014948 1 NC_012751.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1014948 queF 7950645 queF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7-cyano-7-deazaguanine reductase YP_002923882.1 1014106 D 340054 CDS YP_002923883.1 238898202 7950647 complement(1015872..1016429) 1 NC_012751.1 COG1961; inversion of adjacent DNA 1016429 7950647 HDEF_1047 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inversion of adjacent DNA YP_002923883.1 1015872 R 340054 CDS YP_002923884.1 238898203 7950648 complement(1016431..1016805) 1 NC_012751.1 COG4634; hypothetical protein 1016805 7950648 HDEF_1048 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923884.1 1016431 R 340054 CDS YP_002923885.1 238898204 7950649 complement(1016802..1017059) 1 NC_012751.1 COG2442; hypothetical protein 1017059 7950649 HDEF_1049 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923885.1 1016802 R 340054 CDS YP_002923886.1 238898205 7950652 complement(1017679..1018029) 1 NC_012751.1 COG3547; ISHde7 transposase 1018029 7950652 HDEF_1052 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7 transposase YP_002923886.1 1017679 R 340054 CDS YP_002923887.1 238898206 7950653 complement(1017998..1018609) 1 NC_012751.1 COG3547; ISHde7 transposase 1018609 7950653 HDEF_1053 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7 transposase YP_002923887.1 1017998 R 340054 CDS YP_002923888.1 238898207 7950654 complement(1018799..1019941) 1 NC_012751.1 N terminal truncation; COG4644; Tn3-like transposase 1019941 7950654 HDEF_1055 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Tn3-like transposase YP_002923888.1 1018799 R 340054 CDS YP_002923889.1 238898208 7950656 1019941..1020399 1 NC_012751.1 N terminal truncation; COG3547; ISHde7 transposase 1020399 7950656 HDEF_1054 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7 transposase YP_002923889.1 1019941 D 340054 CDS YP_002923890.1 238898209 7950655 1020368..1020718 1 NC_012751.1 N terminal truncation; COG3547; ISHde7 transposase 1020718 7950655 HDEF_1056 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7 transposase YP_002923890.1 1020368 D 340054 CDS YP_002923891.1 238898210 7950658 complement(1020968..1021834) 1 NC_012751.1 plasmid replication initiator protein 1021834 repA_2 7950658 repA_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002923891.1 1020968 R 340054 CDS YP_002923892.1 238898211 7950659 1022235..1022372 1 NC_012751.1 hypothetical protein 1022372 7950659 HDEF_1059 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923892.1 1022235 D 340054 CDS YP_002923893.1 238898212 7950661 complement(1022611..1022739) 1 NC_012751.1 hypothetical protein 1022739 7950661 HDEF_1061 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923893.1 1022611 R 340054 CDS YP_002923894.1 238898213 7950664 complement(1023470..1023607) 1 NC_012751.1 hypothetical protein 1023607 7950664 HDEF_1064 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923894.1 1023470 R 340054 CDS YP_002923895.1 238898214 7950665 1023695..1023808 1 NC_012751.1 hypothetical protein 1023808 7950665 HDEF_1065 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923895.1 1023695 D 340054 CDS YP_002923896.1 238898215 7950666 1023805..1023930 1 NC_012751.1 hypothetical protein 1023930 7950666 HDEF_1066 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923896.1 1023805 D 340054 CDS YP_002923897.1 238898216 7950668 1024335..1025417 1 NC_012751.1 N terminal truncation; relaxase/mobilization protein 1025417 7950668 HDEF_1068 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) relaxase/mobilization protein YP_002923897.1 1024335 D 340054 CDS YP_002923898.1 238898217 7950669 1025418..1025630 1 NC_012751.1 MobD relaxase/mobilization protein 1025630 mobD 7950669 mobD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobD relaxase/mobilization protein YP_002923898.1 1025418 D 340054 CDS YP_002923899.1 238898218 7950670 1025746..1026177 1 NC_012751.1 hypothetical protein 1026177 7950670 HDEF_1070 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923899.1 1025746 D 340054 CDS YP_002923900.1 238898219 7950672 1026420..1026668 1 NC_012751.1 hypothetical protein 1026668 7950672 HDEF_1072 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923900.1 1026420 D 340054 CDS YP_002923901.1 238898220 7950673 complement(1026714..1027406) 1 NC_012751.1 transcriptional regulator 1027406 7950673 HDEF_1073 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923901.1 1026714 R 340054 CDS YP_002923902.1 238898221 7950674 complement(1027587..1027862) 1 NC_012751.1 phage protein 1027862 7950674 HDEF_1074 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage protein YP_002923902.1 1027587 R 340054 CDS YP_002923903.1 238898222 7950676 1028391..1028615 1 NC_012751.1 COG4710; addiction module antitoxin 1028615 7950676 HDEF_1076 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923903.1 1028391 D 340054 CDS YP_002923904.1 238898223 7950677 1028599..1028865 1 NC_012751.1 COG2026; addiction module antitoxin 1028865 7950677 HDEF_1077 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923904.1 1028599 D 340054 CDS YP_002923905.1 238898224 7950679 complement(1029468..1029872) 1 NC_012751.1 ISHde1, transposase 1029872 7950679 HDEF_1079 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923905.1 1029468 R 340054 CDS YP_002923906.1 238898225 7950680 complement(1029913..1030290) 1 NC_012751.1 ISHde1, transposase 1030290 7950680 HDEF_1080 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002923906.1 1029913 R 340054 CDS YP_002923907.1 238898226 7950683 1031156..1033195 1 NC_012751.1 COG0286; type II restriction endonuclease 1033195 7950683 HDEF_1083 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type II restriction endonuclease YP_002923907.1 1031156 D 340054 CDS YP_002923908.1 238898227 7950684 1033285..1034295 1 NC_012751.1 R of type II restriction and modification system 1034295 7950684 HDEF_1084 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) R of type II restriction and modification system YP_002923908.1 1033285 D 340054 CDS YP_002923909.1 238898228 7950685 complement(1034310..1034564) 1 NC_012751.1 COG4115; addiction module toxin 1034564 7950685 HDEF_1085 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002923909.1 1034310 R 340054 CDS YP_002923910.1 238898229 7950686 complement(1034561..1034812) 1 NC_012751.1 Antitoxin that counteracts the effect of the YoeB toxin; antitoxin YefM 1034812 7950686 HDEF_1086 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) antitoxin YefM YP_002923910.1 1034561 R 340054 CDS YP_002923911.1 238898230 7950688 complement(1035387..1035935) 1 NC_012751.1 protein with partial replication initiation protein region 1035935 7950688 HDEF_1088 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein with partial replication initiation protein region YP_002923911.1 1035387 R 340054 CDS YP_002923912.1 238898231 7950689 complement(1036116..1036391) 1 NC_012751.1 phage protein 1036391 7950689 HDEF_1089 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage protein YP_002923912.1 1036116 R 340054 CDS YP_002923913.1 238898232 7950691 complement(1036593..1036706) 1 NC_012751.1 hypothetical protein 1036706 7950691 HDEF_1091 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923913.1 1036593 R 340054 CDS YP_002923914.1 238898233 7950692 1036771..1036896 1 NC_012751.1 hypothetical protein 1036896 7950692 HDEF_1092 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923914.1 1036771 D 340054 CDS YP_002923915.1 238898234 7950693 complement(1036843..1036977) 1 NC_012751.1 hypothetical protein 1036977 7950693 HDEF_1094 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923915.1 1036843 R 340054 CDS YP_002923916.1 238898235 7950695 1036954..1037181 1 NC_012751.1 hypothetical protein 1037181 7950695 HDEF_1093 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923916.1 1036954 D 340054 CDS YP_002923917.1 238898236 7950694 complement(1037138..1037245) 1 NC_012751.1 hypothetical protein 1037245 7950694 HDEF_1095 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923917.1 1037138 R 340054 CDS YP_002923918.1 238898237 7950696 complement(1037289..1037420) 1 NC_012751.1 hypothetical protein 1037420 7950696 HDEF_1096 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923918.1 1037289 R 340054 CDS YP_002923919.1 238898238 7950697 complement(1037607..1037699) 1 NC_012751.1 hypothetical protein 1037699 7950697 HDEF_1097 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923919.1 1037607 R 340054 CDS YP_002923920.1 238898239 7950698 complement(1037689..1037928) 1 NC_012751.1 hypothetical protein 1037928 7950698 HDEF_1098 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923920.1 1037689 R 340054 CDS YP_002923921.1 238898240 7950699 complement(1037925..1038218) 1 NC_012751.1 N terminal truncation; COG1192; plasmid partition protein ParA-like protein 1038218 7950699 HDEF_1099 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002923921.1 1037925 R 340054 CDS YP_002923922.1 238898241 7950700 1038306..1038449 1 NC_012751.1 hypothetical protein 1038449 7950700 HDEF_1100 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923922.1 1038306 D 340054 CDS YP_002923923.1 238898242 7950701 complement(1038430..1038573) 1 NC_012751.1 hypothetical protein 1038573 7950701 HDEF_1102 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923923.1 1038430 R 340054 CDS YP_002923924.1 238898243 7950702 complement(1039113..1039841) 1 NC_012751.1 cysteine protease YopT-like effector 1039841 yopT_1 7950702 yopT_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteine protease YopT-like effector YP_002923924.1 1039113 R 340054 CDS YP_002923925.1 238898244 7950704 complement(1039822..1040142) 1 NC_012751.1 hypothetical protein 1040142 7950704 HDEF_1104 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923925.1 1039822 R 340054 CDS YP_002923926.1 238898245 7950705 complement(1040194..1040424) 1 NC_012751.1 hypothetical protein 1040424 7950705 HDEF_1105 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923926.1 1040194 R 340054 CDS YP_002923927.1 238898246 7950706 complement(1040397..1040612) 1 NC_012751.1 hypothetical protein 1040612 7950706 HDEF_1106 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923927.1 1040397 R 340054 CDS YP_002923928.1 238898247 7950707 complement(1040620..1041087) 1 NC_012751.1 COG2801; ISHde4 transposase, orfB 1041087 7950707 HDEF_1107 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfB YP_002923928.1 1040620 R 340054 CDS YP_002923929.1 238898248 7950708 complement(1041084..1041266) 1 NC_012751.1 COG2801; ISHde4 transposase, orfA 1041266 7950708 HDEF_1108 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfA YP_002923929.1 1041084 R 340054 CDS YP_002923930.1 238898249 7950710 complement(1041902..1042177) 1 NC_012751.1 N terminal truncation; phage terminase, small subunit, P27 family 1042177 7950710 HDEF_1110 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage terminase, small subunit, P27 family YP_002923930.1 1041902 R 340054 CDS YP_002923931.1 238898250 7950711 complement(1042410..1042541) 1 NC_012751.1 hypothetical protein 1042541 7950711 HDEF_1111 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923931.1 1042410 R 340054 CDS YP_002923932.1 238898251 7950712 complement(1042516..1042875) 1 NC_012751.1 phage HNH endonuclease 1042875 7950712 HDEF_1112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage HNH endonuclease YP_002923932.1 1042516 R 340054 CDS YP_002923933.1 238898252 7950713 1043551..1043700 1 NC_012751.1 COG2801; ISHde4 transposase, orfA 1043700 7950713 HDEF_1113 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfA YP_002923933.1 1043551 D 340054 CDS YP_002923934.1 238898253 7950714 1043697..1044164 1 NC_012751.1 N and C terminal truncations; COG2801; ISHde4 transposase, orfB 1044164 7950714 HDEF_1114 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfB YP_002923934.1 1043697 D 340054 CDS YP_002923935.1 238898254 7950715 complement(1044220..1044516) 1 NC_012751.1 C terminal truncation; COG0550; DNA topoisomerase III 1044516 topB 7950715 topB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA topoisomerase III YP_002923935.1 1044220 R 340054 CDS YP_002923936.1 238898255 7950716 complement(1044668..1044865) 1 NC_012751.1 hypothetical protein 1044865 7950716 HDEF_1116 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923936.1 1044668 R 340054 CDS YP_002923937.1 238898256 7950717 complement(1045304..1045474) 1 NC_012751.1 hypothetical protein 1045474 7950717 HDEF_1117 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923937.1 1045304 R 340054 CDS YP_002923938.1 238898257 7950719 1046455..1049616 1 NC_012751.1 non-LEE encoded type III effector 1049616 nleD 7950719 nleD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) non-LEE encoded type III effector YP_002923938.1 1046455 D 340054 CDS YP_002923939.1 238898258 7950720 1049966..1050094 1 NC_012751.1 hypothetical protein 1050094 7950720 HDEF_1120 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923939.1 1049966 D 340054 CDS YP_002923940.1 238898259 7950721 complement(1050119..1050415) 1 NC_012751.1 COG3668; addiction module 1050415 7950721 HDEF_1121 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002923940.1 1050119 R 340054 CDS YP_002923941.1 238898260 7950722 1050650..1051162 1 NC_012751.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1051162 mpg_1 7950722 mpg_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-methyladenine DNA glycosylase YP_002923941.1 1050650 D 340054 CDS YP_002923942.1 238898261 7950723 1051547..1052647 1 NC_012751.1 similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 1052647 7950723 HDEF_1123 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923942.1 1051547 D 340054 CDS YP_002923943.1 238898262 7950724 1052991..1053719 1 NC_012751.1 transcriptional regulator 1053719 7950724 HDEF_1124 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923943.1 1052991 D 340054 CDS YP_002923944.1 238898263 7950725 1053996..1054292 1 NC_012751.1 addiction module antitoxin 1054292 7950725 HDEF_1125 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923944.1 1053996 D 340054 CDS YP_002923945.1 238898264 7950726 1054707..1054808 1 NC_012751.1 hypothetical protein 1054808 7950726 HDEF_1126 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923945.1 1054707 D 340054 CDS YP_002923946.1 238898265 7950727 1054872..1056833 1 NC_012751.1 hypothetical protein 1056833 7950727 HDEF_1127 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923946.1 1054872 D 340054 CDS YP_002923947.1 238898266 7950729 1057537..1057653 1 NC_012751.1 hypothetical protein 1057653 7950729 HDEF_1129 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923947.1 1057537 D 340054 CDS YP_002923948.1 238898267 7950730 complement(1057746..1057850) 1 NC_012751.1 hypothetical protein 1057850 7950730 HDEF_1130 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923948.1 1057746 R 340054 CDS YP_002923949.1 238898268 7950732 complement(1058521..1059198) 1 NC_012751.1 transcriptional regulator 1059198 7950732 HDEF_1132 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923949.1 1058521 R 340054 CDS YP_002923950.1 238898269 7950733 complement(1059443..1059640) 1 NC_012751.1 hypothetical protein 1059640 7950733 HDEF_1133 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923950.1 1059443 R 340054 CDS YP_002923951.1 238898270 7950736 complement(1060544..1060918) 1 NC_012751.1 N terminal truncation; COG5464; transposase 1060918 7950736 HDEF_1136 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923951.1 1060544 R 340054 CDS YP_002923952.1 238898271 7950737 complement(1061025..1061309) 1 NC_012751.1 transcriptional regulator 1061309 7950737 HDEF_1137 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923952.1 1061025 R 340054 CDS YP_002923953.1 238898272 7950738 complement(1061311..1061643) 1 NC_012751.1 hypothetical protein 1061643 7950738 HDEF_1138 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923953.1 1061311 R 340054 CDS YP_002923954.1 238898273 7950739 complement(1061977..1062261) 1 NC_012751.1 N terminal truncation; COG1961; resolvase 1062261 7950739 HDEF_1139 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002923954.1 1061977 R 340054 CDS YP_002923955.1 238898274 7950740 1062468..1062842 1 NC_012751.1 C terminal truncation, similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 1062842 7950740 HDEF_1140 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923955.1 1062468 D 340054 CDS YP_002923956.1 238898275 7950741 complement(1062781..1063593) 1 NC_012751.1 C terminal truncation; plasmid replication initiator protein 1063593 repA_3 7950741 repA_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002923956.1 1062781 R 340054 CDS YP_002923957.1 238898276 7950742 complement(1063774..1064373) 1 NC_012751.1 N terminal truncation; COG4644; ISHde8 transposase 1064373 7950742 HDEF_1142 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde8 transposase YP_002923957.1 1063774 R 340054 CDS YP_002923958.1 238898277 7950743 1064943..1065038 1 NC_012751.1 transposase 1065038 7950743 HDEF_1143 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923958.1 1064943 D 340054 CDS YP_002923959.1 238898278 7950744 complement(1065063..1065458) 1 NC_012751.1 C terminal truncation; COG1961; resolvase 1065458 7950744 HDEF_1144 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002923959.1 1065063 R 340054 CDS YP_002923960.1 238898279 7950745 1065986..1066099 1 NC_012751.1 hypothetical protein 1066099 7950745 HDEF_1145 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923960.1 1065986 D 340054 CDS YP_002923961.1 238898280 7950746 1066339..1067652 1 NC_012751.1 adenylate cyclase-1 1067652 exoY_1 7950746 exoY_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenylate cyclase-1 YP_002923961.1 1066339 D 340054 CDS YP_002923962.1 238898281 7950748 complement(1068174..1068584) 1 NC_012751.1 N terminal truncation; plasmid partition protein ParA-like protein 1068584 7950748 HDEF_1148 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002923962.1 1068174 R 340054 CDS YP_002923963.1 238898282 7950750 complement(1069466..1069966) 1 NC_012751.1 N terminal truncation; transposase 1069966 7950750 HDEF_1150 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002923963.1 1069466 R 340054 CDS YP_002923964.1 238898283 7950751 1070164..1070463 1 NC_012751.1 COG2963; ISHde3, transposase 1070463 7950751 HDEF_1151 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde3, transposase YP_002923964.1 1070164 D 340054 CDS YP_002923965.1 238898284 7950752 1070680..1071081 1 NC_012751.1 COG2801; ISHde3, transposase 1071081 7950752 HDEF_1152 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde3, transposase YP_002923965.1 1070680 D 340054 CDS YP_002923966.1 238898285 7950753 complement(1071408..1071557) 1 NC_012751.1 C terminal truncation; hypothetical protein 1071557 7950753 HDEF_1153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923966.1 1071408 R 340054 CDS YP_002923967.1 238898286 7950754 complement(1071589..1072230) 1 NC_012751.1 N terminal truncation; Mu-like phage P protein 1072230 7950754 HDEF_1154 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like phage P protein YP_002923967.1 1071589 R 340054 CDS YP_002923968.1 238898287 7950755 1072717..1073304 1 NC_012751.1 cysteine protease YopT-like effector 1073304 yopT_2 7950755 yopT_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteine protease YopT-like effector YP_002923968.1 1072717 D 340054 CDS YP_002923969.1 238898288 7951955 1073875..1075557 1 NC_012751.1 reverse transcriptase 1075557 7951955 HDEF_1156 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002923969.1 1073875 D 340054 CDS YP_002923970.1 238898289 7950757 1075689..1079978 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_1158 and HDEF_1159; RTX-family protein-10 1079978 rtxA_10 7950757 rtxA_10 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-10 YP_002923970.1 1075689 D 340054 CDS YP_002923971.1 238898290 7950758 1079993..1080580 1 NC_012751.1 Possible C and N terminal truncations with HDEF_1157 and HDEF_1159; RTX-family protein-11 1080580 rtxA_11 7950758 rtxA_11 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-11 YP_002923971.1 1079993 D 340054 CDS YP_002923972.1 238898291 7950759 1080699..1082216 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_1157 and HDEF_1158; RTX-family protein-12 1082216 rtxA_12 7950759 rtxA_12 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-12 YP_002923972.1 1080699 D 340054 CDS YP_002923973.1 238898292 7950760 complement(1082509..1083114) 1 NC_012751.1 COG0778; nitroreductase 1083114 7950760 HDEF_1160 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) nitroreductase YP_002923973.1 1082509 R 340054 CDS YP_002923974.1 238898293 7950761 1083413..1083568 1 NC_012751.1 hypothetical protein 1083568 7950761 HDEF_1161 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923974.1 1083413 D 340054 CDS YP_002923975.1 238898294 7950762 1083881..1084108 1 NC_012751.1 COG0776; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation 1084108 hupB 7950762 hupB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation YP_002923975.1 1083881 D 340054 CDS YP_002923976.1 238898295 7950765 complement(1085168..1085266) 1 NC_012751.1 hypothetical protein 1085266 7950765 HDEF_1165 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923976.1 1085168 R 340054 CDS YP_002923977.1 238898296 7950767 1086631..1087077 1 NC_012751.1 COG3727; DNA mismatch endonuclease 1087077 vsr 7950767 vsr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA mismatch endonuclease YP_002923977.1 1086631 D 340054 CDS YP_002923978.1 238898297 7950768 1087074..1088279 1 NC_012751.1 type II restriction endonuclease, EcoRII-C domain protein 1088279 7950768 HDEF_1168 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type II restriction endonuclease, EcoRII-C domain protein YP_002923978.1 1087074 D 340054 CDS YP_002923979.1 238898298 7950769 1088578..1088685 1 NC_012751.1 hypothetical protein 1088685 7950769 HDEF_1169 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923979.1 1088578 D 340054 CDS YP_002923980.1 238898299 7950770 complement(1088863..1089621) 1 NC_012751.1 hypothetical protein 1089621 7950770 HDEF_1170 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923980.1 1088863 R 340054 CDS YP_002923981.1 238898300 7950771 complement(1089998..1090096) 1 NC_012751.1 hypothetical protein 1090096 7950771 HDEF_1171 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923981.1 1089998 R 340054 CDS YP_002923982.1 238898301 7950772 1090505..1090747 1 NC_012751.1 hypothetical protein 1090747 7950772 HDEF_1172 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923982.1 1090505 D 340054 CDS YP_002923983.1 238898302 7950774 1091701..1092129 1 NC_012751.1 hypothetical protein 1092129 7950774 HDEF_1174 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923983.1 1091701 D 340054 CDS YP_002923984.1 238898303 7950775 1092263..1092469 1 NC_012751.1 hypothetical protein 1092469 7950775 HDEF_1175 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923984.1 1092263 D 340054 CDS YP_002923985.1 238898304 7950776 1092688..1092843 1 NC_012751.1 hypothetical protein 1092843 7950776 HDEF_1176 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923985.1 1092688 D 340054 CDS YP_002923986.1 238898305 7950777 1093284..1095212 1 NC_012751.1 hypothetical protein 1095212 7950777 HDEF_1177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923986.1 1093284 D 340054 CDS YP_002923987.1 238898306 7950778 complement(1095328..1095453) 1 NC_012751.1 hypothetical protein 1095453 7950778 HDEF_1178 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923987.1 1095328 R 340054 CDS YP_002923988.1 238898307 7950780 complement(1096455..1096841) 1 NC_012751.1 COG3744; twitching motility protein PilT 1096841 7950780 HDEF_1180 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) twitching motility protein PilT YP_002923988.1 1096455 R 340054 CDS YP_002923989.1 238898308 7950781 complement(1096841..1097083) 1 NC_012751.1 COG4118; addiction module antitoxin 1097083 7950781 HDEF_1181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923989.1 1096841 R 340054 CDS YP_002923990.1 238898309 7950782 complement(1097652..1097900) 1 NC_012751.1 COG3636; addiction module antitoxin 1097900 7950782 HDEF_1182 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002923990.1 1097652 R 340054 CDS YP_002923991.1 238898310 7950784 complement(1098163..1098540) 1 NC_012751.1 RTX-family protein-13 1098540 rtxA_13 7950784 rtxA_13 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-13 YP_002923991.1 1098163 R 340054 CDS YP_002923992.1 238898311 7950785 complement(1098613..1100151) 1 NC_012751.1 hypothetical protein 1100151 7950785 HDEF_1185 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923992.1 1098613 R 340054 CDS YP_002923993.1 238898312 7950786 complement(1101813..1107737) 1 NC_012751.1 RTX-family protein-14 1107737 rtxA_14 7950786 rtxA_14 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-14 YP_002923993.1 1101813 R 340054 CDS YP_002923994.1 238898313 7950787 1107893..1108096 1 NC_012751.1 hypothetical protein 1108096 7950787 HDEF_1187 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923994.1 1107893 D 340054 CDS YP_002923995.1 238898314 7950788 1108167..1108358 1 NC_012751.1 N terminal truncation; transcriptional regulator 1108358 7950788 HDEF_1188 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002923995.1 1108167 D 340054 CDS YP_002923996.1 238898315 7950789 complement(1108471..1108743) 1 NC_012751.1 hypothetical protein 1108743 7950789 HDEF_1189 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923996.1 1108471 R 340054 CDS YP_002923997.1 238898316 7950790 complement(1108740..1108970) 1 NC_012751.1 hypothetical protein 1108970 7950790 HDEF_1190 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923997.1 1108740 R 340054 CDS YP_002923998.1 238898317 7950791 complement(1109445..1109687) 1 NC_012751.1 hypothetical protein 1109687 7950791 HDEF_1191 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923998.1 1109445 R 340054 CDS YP_002923999.1 238898318 7950792 1109744..1109881 1 NC_012751.1 hypothetical protein 1109881 7950792 HDEF_1192 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002923999.1 1109744 D 340054 CDS YP_002924000.1 238898319 7950793 complement(1109920..1110042) 1 NC_012751.1 hypothetical protein 1110042 7950793 HDEF_1193 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924000.1 1109920 R 340054 CDS YP_002924001.1 238898320 7950794 1110126..1111793 1 NC_012751.1 RTX-family protein-15 1111793 rtxA_15 7950794 rtxA_15 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-15 YP_002924001.1 1110126 D 340054 CDS YP_002924002.1 238898321 7950795 1111871..1112014 1 NC_012751.1 hypothetical protein 1112014 7950795 HDEF_1195 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924002.1 1111871 D 340054 CDS YP_002924003.1 238898322 7950796 1112088..1112681 1 NC_012751.1 COG1896; hydrolase, HD superfamily 1112681 7950796 HDEF_1196 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hydrolase, HD superfamily YP_002924003.1 1112088 D 340054 CDS YP_002924004.1 238898323 7950797 complement(1112723..1112821) 1 NC_012751.1 hypothetical protein 1112821 7950797 HDEF_1197 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924004.1 1112723 R 340054 CDS YP_002924005.1 238898324 7950798 1112836..1112931 1 NC_012751.1 hypothetical protein 1112931 7950798 HDEF_1198 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924005.1 1112836 D 340054 CDS YP_002924006.1 238898325 7950799 1113041..1113145 1 NC_012751.1 hypothetical protein 1113145 7950799 HDEF_1199 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924006.1 1113041 D 340054 CDS YP_002924007.1 238898326 7950800 complement(1113288..1113995) 1 NC_012751.1 COG0132; dethiobiotin synthetase 1113995 bioD 7950800 bioD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dethiobiotin synthetase YP_002924007.1 1113288 R 340054 CDS YP_002924008.1 238898327 7950801 complement(1113973..1114749) 1 NC_012751.1 COG0500; biotin biosynthesis; reaction prior to pimeloyl CoA 1114749 bioC 7950801 bioC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) biotin biosynthesis; reaction prior to pimeloyl CoA YP_002924008.1 1113973 R 340054 CDS YP_002924009.1 238898328 7950802 complement(1114746..1115900) 1 NC_012751.1 COG0156; 7-keto-8-aminopelargonic acid synthetase 1115900 bioF 7950802 bioF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7-keto-8-aminopelargonic acid synthetase YP_002924009.1 1114746 R 340054 CDS YP_002924010.1 238898329 7950803 complement(1115901..1116977) 1 NC_012751.1 COG0502; biotin synthetase 1116977 bioB 7950803 bioB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) biotin synthetase YP_002924010.1 1115901 R 340054 CDS YP_002924011.1 238898330 7950804 complement(1117101..1118855) 1 NC_012751.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1118855 msbA 7950804 msbA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipid transporter ATP-binding/permease YP_002924011.1 1117101 R 340054 CDS YP_002924012.1 238898331 7950805 complement(1118871..1121192) 1 NC_012751.1 hypothetical protein 1121192 7950805 HDEF_1205 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924012.1 1118871 R 340054 CDS YP_002924013.1 238898332 7950806 1121205..1121300 1 NC_012751.1 hypothetical protein 1121300 7950806 HDEF_1206 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924013.1 1121205 D 340054 CDS YP_002924014.1 238898333 7950807 complement(1121397..1121489) 1 NC_012751.1 hypothetical protein 1121489 7950807 HDEF_1207 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924014.1 1121397 R 340054 CDS YP_002924015.1 238898334 7950808 complement(1121556..1125380) 1 NC_012751.1 COG4230; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase 1125380 putA 7950808 putA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase YP_002924015.1 1121556 R 340054 CDS YP_002924016.1 238898335 7950809 1125581..1125673 1 NC_012751.1 hypothetical protein 1125673 7950809 HDEF_1209 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924016.1 1125581 D 340054 CDS YP_002924017.1 238898336 7950810 1125594..1127081 1 NC_012751.1 COG0591; major sodium:proline symporter (SSS family) 1127081 putP 7950810 putP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) major sodium:proline symporter (SSS family) YP_002924017.1 1125594 D 340054 CDS YP_002924018.1 238898337 7950811 complement(1127144..1127437) 1 NC_012751.1 hypothetical protein 1127437 7950811 HDEF_1211 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924018.1 1127144 R 340054 CDS YP_002924019.1 238898338 7950812 complement(1127430..1127897) 1 NC_012751.1 hypothetical protein 1127897 7950812 HDEF_1212 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924019.1 1127430 R 340054 CDS YP_002924020.1 238898339 7950813 complement(1127894..1128154) 1 NC_012751.1 weak similarity to C terminus of orgAb; hypothetical protein 1128154 7950813 HDEF_1213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924020.1 1127894 R 340054 CDS YP_002924021.1 238898340 7950814 complement(1128147..1128614) 1 NC_012751.1 oxygen-regulated invasion protein 1128614 orgAb 7950814 orgAb Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) oxygen-regulated invasion protein YP_002924021.1 1128147 R 340054 CDS YP_002924022.1 238898341 7950815 complement(1128571..1129149) 1 NC_012751.1 oxygen-regulated invasion protein 1129149 orgA 7950815 orgA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) oxygen-regulated invasion protein YP_002924022.1 1128571 R 340054 CDS YP_002924023.1 238898342 7950816 complement(1129150..1129899) 1 NC_012751.1 COG4669; type III needle complex inner membrane lipoprotein 1129899 prgK 7950816 prgK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex inner membrane lipoprotein YP_002924023.1 1129150 R 340054 CDS YP_002924024.1 238898343 7950817 complement(1129899..1130198) 1 NC_012751.1 type III needle inner rod protein 1130198 prgJ 7950817 prgJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle inner rod protein YP_002924024.1 1129899 R 340054 CDS YP_002924025.1 238898344 7950818 complement(1130260..1130616) 1 NC_012751.1 type III secretion needle protein 1130616 7950818 HDEF_1218 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion needle protein YP_002924025.1 1130260 R 340054 CDS YP_002924026.1 238898345 7950819 complement(1130631..1131839) 1 NC_012751.1 type III needle complex inner membrane protein 1131839 prgH 7950819 prgH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex inner membrane protein YP_002924026.1 1130631 R 340054 CDS YP_002924027.1 238898346 7950820 complement(1131864..1131986) 1 NC_012751.1 hypothetical protein 1131986 7950820 HDEF_1220 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924027.1 1131864 R 340054 CDS YP_002924028.1 238898347 7950821 1132081..1132200 1 NC_012751.1 hypothetical protein 1132200 7950821 HDEF_1221 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924028.1 1132081 D 340054 CDS YP_002924029.1 238898348 7950822 1132355..1132591 1 NC_012751.1 hypothetical protein 1132591 7950822 HDEF_1222 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924029.1 1132355 D 340054 CDS YP_002924030.1 238898349 7951956 1133137..1134849 1 NC_012751.1 reverse transcriptase 1134849 7951956 HDEF_1223 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924030.1 1133137 D 340054 CDS YP_002924031.1 238898350 7950824 1134830..1135195 1 NC_012751.1 N terminal truncation; PilQ type IV pilus biogenesis protein ATPase, partial 1135195 pilQ_2 7950824 pilQ_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus biogenesis protein ATPase, partial YP_002924031.1 1134830 D 340054 CDS YP_002924032.1 238898351 7950826 complement(1136493..1136987) 1 NC_012751.1 COG0071; small heat shock protein 1136987 ibpB 7950826 ibpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) small heat shock protein YP_002924032.1 1136493 R 340054 CDS YP_002924033.1 238898352 7950827 1137096..1138196 1 NC_012751.1 PilR type IV pilus biosynthesis protein 1138196 pilR_2 7950827 pilR_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilR type IV pilus biosynthesis protein YP_002924033.1 1137096 D 340054 CDS YP_002924034.1 238898353 7950828 1138199..1138825 1 NC_012751.1 PilS type IV pilus prepilin 1138825 pilS 7950828 pilS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilS type IV pilus prepilin YP_002924034.1 1138199 D 340054 CDS YP_002924035.1 238898354 7950829 1138859..1138975 1 NC_012751.1 hypothetical protein 1138975 7950829 HDEF_1229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924035.1 1138859 D 340054 CDS YP_002924036.1 238898355 7950830 1138920..1139381 1 NC_012751.1 COG0741; PilT lytic transglycosylase 1139381 pilT_3 7950830 pilT_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilT lytic transglycosylase YP_002924036.1 1138920 D 340054 CDS YP_002924037.1 238898356 7950831 1139378..1139866 1 NC_012751.1 hypothetical protein 1139866 7950831 HDEF_1231 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924037.1 1139378 D 340054 CDS YP_002924038.1 238898357 7950832 complement(1139799..1140065) 1 NC_012751.1 COG3041; addiction module toxin 1140065 7950832 HDEF_1232 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002924038.1 1139799 R 340054 CDS YP_002924039.1 238898358 7950833 complement(1140068..1140325) 1 NC_012751.1 COG3077; addiction module antitoxin 1140325 7950833 HDEF_1233 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002924039.1 1140068 R 340054 CDS YP_002924040.1 238898359 7950834 complement(1140499..1140597) 1 NC_012751.1 hypothetical protein 1140597 7950834 HDEF_1234 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924040.1 1140499 R 340054 CDS YP_002924041.1 238898360 7950835 1140776..1140991 1 NC_012751.1 COG2963; ISHde4 transposase, orfA 1140991 7950835 HDEF_1235 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfA YP_002924041.1 1140776 D 340054 CDS YP_002924042.1 238898361 7950836 1141286..1141753 1 NC_012751.1 COG2801; ISHde4 transposase, orfB 1141753 7950836 HDEF_1236 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde4 transposase, orfB YP_002924042.1 1141286 D 340054 CDS YP_002924043.1 238898362 7950838 complement(1142289..1142651) 1 NC_012751.1 hypothetical protein 1142651 7950838 HDEF_1238 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924043.1 1142289 R 340054 CDS YP_002924044.1 238898363 7950839 complement(1142657..1143283) 1 NC_012751.1 hypothetical protein 1143283 7950839 HDEF_1239 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924044.1 1142657 R 340054 CDS YP_002924045.1 238898364 7950840 complement(1143621..1143902) 1 NC_012751.1 ISHde2, transposase 1143902 7950840 HDEF_1240 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924045.1 1143621 R 340054 CDS YP_002924046.1 238898365 7950841 complement(1144043..1144408) 1 NC_012751.1 ISHde2, transposase 1144408 7950841 HDEF_1241 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924046.1 1144043 R 340054 CDS YP_002924047.1 238898366 7950842 complement(1144673..1144849) 1 NC_012751.1 hypothetical protein 1144849 7950842 HDEF_1243 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924047.1 1144673 R 340054 CDS YP_002924048.1 238898367 7950843 complement(1145141..1147009) 1 NC_012751.1 Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup 1147009 trkD 7950843 trkD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) potassium transport protein Kup YP_002924048.1 1145141 R 340054 CDS YP_002924049.1 238898368 7950845 complement(1147149..1147253) 1 NC_012751.1 hypothetical protein 1147253 7950845 HDEF_1245 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924049.1 1147149 R 340054 CDS YP_002924050.1 238898369 7950846 1147392..1147496 1 NC_012751.1 hypothetical protein 1147496 7950846 HDEF_1246 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924050.1 1147392 D 340054 CDS YP_002924051.1 238898370 7950847 complement(1147665..1148009) 1 NC_012751.1 hypothetical protein 1148009 7950847 HDEF_1247 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924051.1 1147665 R 340054 CDS YP_002924052.1 238898371 7950850 complement(1150161..1155554) 1 NC_012751.1 RTX-family protein-16 1155554 rtxA_16 7950850 rtxA_16 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-16 YP_002924052.1 1150161 R 340054 CDS YP_002924053.1 238898372 7951957 1156207..1157889 1 NC_012751.1 reverse transcriptase 1157889 7951957 HDEF_1251 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924053.1 1156207 D 340054 CDS YP_002924054.1 238898373 7950852 1158008..1158715 1 NC_012751.1 hypothetical protein 1158715 7950852 HDEF_1252 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924054.1 1158008 D 340054 CDS YP_002924055.1 238898374 7950853 1159074..1159463 1 NC_012751.1 hypothetical protein 1159463 7950853 HDEF_1253 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924055.1 1159074 D 340054 CDS YP_002924056.1 238898375 7950854 complement(1159540..1160376) 1 NC_012751.1 COG0169; dehydroshikimate reductase, NAD(P)-binding 1160376 aroE 7950854 aroE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dehydroshikimate reductase, NAD(P)-binding YP_002924056.1 1159540 R 340054 CDS YP_002924057.1 238898376 7950855 complement(1160376..1161098) 1 NC_012751.1 COG1187; 16S rRNA pseudouridylate 516 synthase 1161098 rsuA 7950855 rsuA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S rRNA pseudouridylate 516 synthase YP_002924057.1 1160376 R 340054 CDS YP_002924058.1 238898377 7950856 complement(1161127..1162131) 1 NC_012751.1 COG2706; 6-phosphogluconolactonase 1162131 pgl 7950856 pgl Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 6-phosphogluconolactonase YP_002924058.1 1161127 R 340054 CDS YP_002924059.1 238898378 7950857 complement(1162148..1162297) 1 NC_012751.1 hypothetical protein 1162297 7950857 HDEF_1257 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924059.1 1162148 R 340054 CDS YP_002924060.1 238898379 7950858 1162522..1163460 1 NC_012751.1 COG0408; coproporphyrinogen III oxidase 1163460 hemF 7950858 hemF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) coproporphyrinogen III oxidase YP_002924060.1 1162522 D 340054 CDS YP_002924061.1 238898380 7950859 1163742..1164170 1 NC_012751.1 COG0102; 50S ribosomal protein L13 1164170 rplM 7950859 rplM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L13 YP_002924061.1 1163742 D 340054 CDS YP_002924062.1 238898381 7950860 1164185..1164577 1 NC_012751.1 COG0103; 30S ribosomal protein S9 1164577 rpsI 7950860 rpsI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S9 YP_002924062.1 1164185 D 340054 CDS YP_002924063.1 238898382 7950861 1164773..1165513 1 NC_012751.1 activator of transcription for bacteriophage P1 late genes; COG0625; stringent starvation protein A 1165513 sspA 7950861 sspA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) stringent starvation protein A YP_002924063.1 1164773 D 340054 CDS YP_002924064.1 238898383 7950862 1165590..1166081 1 NC_012751.1 COG2969; stringent starvation protein B, specificity factor for ClpXP protease 1166081 sspB 7950862 sspB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) stringent starvation protein B, specificity factor for ClpXP protease YP_002924064.1 1165590 D 340054 CDS YP_002924065.1 238898384 7950864 complement(1168941..1169099) 1 NC_012751.1 hypothetical protein 1169099 7950864 HDEF_1264 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924065.1 1168941 R 340054 CDS YP_002924066.1 238898385 7950865 complement(1169080..1169190) 1 NC_012751.1 hypothetical protein 1169190 7950865 HDEF_1265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924066.1 1169080 R 340054 CDS YP_002924067.1 238898386 7950866 complement(1169159..1169548) 1 NC_012751.1 hypothetical protein 1169548 7950866 HDEF_1266 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924067.1 1169159 R 340054 CDS YP_002924068.1 238898387 7950867 complement(1169554..1169799) 1 NC_012751.1 hypothetical protein 1169799 7950867 HDEF_1267 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924068.1 1169554 R 340054 CDS YP_002924069.1 238898388 7950868 1169832..1169969 1 NC_012751.1 hypothetical protein 1169969 7950868 HDEF_1268 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924069.1 1169832 D 340054 CDS YP_002924070.1 238898389 7950869 1170204..1171247 1 NC_012751.1 hypothetical protein 1171247 7950869 HDEF_1269 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924070.1 1170204 D 340054 CDS YP_002924071.1 238898390 7950870 complement(1171343..1172674) 1 NC_012751.1 COG1220; ATPase of the HslUV protease, also functions as molecular chaperone 1172674 hslU 7950870 hslU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATPase of the HslUV protease, also functions as molecular chaperone YP_002924071.1 1171343 R 340054 CDS YP_002924072.1 238898391 7950871 complement(1172681..1173217) 1 NC_012751.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1173217 hslV 7950871 hslV Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent protease peptidase subunit YP_002924072.1 1172681 R 340054 CDS YP_002924073.1 238898392 7950872 complement(1173306..1173998) 1 NC_012751.1 COG3087; essential cell division protein, epimerase- or mutase-like protein 1173998 ftsN 7950872 ftsN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) essential cell division protein, epimerase- or mutase-like protein YP_002924073.1 1173306 R 340054 CDS YP_002924074.1 238898393 7950873 1174334..1175698 1 NC_012751.1 COG1113; aromatic amino acid transport protein (APC family) 1175698 aroP 7950873 aroP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aromatic amino acid transport protein (APC family) YP_002924074.1 1174334 D 340054 CDS YP_002924075.1 238898394 7950874 1175783..1176778 1 NC_012751.1 COG0157; quinolinate phosphoribosyltransferase 1176778 nadC 7950874 nadC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) quinolinate phosphoribosyltransferase YP_002924075.1 1175783 D 340054 CDS YP_002924076.1 238898395 7950875 complement(1176667..1177491) 1 NC_012751.1 COG3022; hypothetical protein 1177491 7950875 HDEF_1275 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924076.1 1176667 R 340054 CDS YP_002924077.1 238898396 7950877 1178211..1179665 1 NC_012751.1 COG0415; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding 1179665 phrB 7950877 phrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding YP_002924077.1 1178211 D 340054 CDS YP_002924078.1 238898397 7950878 1179655..1180398 1 NC_012751.1 COG0327; hypothetical protein 1180398 7950878 HDEF_1278 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924078.1 1179655 D 340054 CDS YP_002924079.1 238898398 7950879 1180548..1181840 1 NC_012751.1 COG0172; serine tRNA synthetase; also charges selenocystein tRNA with serine 1181840 serS 7950879 serS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine tRNA synthetase; also charges selenocystein tRNA with serine YP_002924079.1 1180548 D 340054 CDS YP_002924080.1 238898399 7950880 1182035..1182691 1 NC_012751.1 hypothetical protein 1182691 7950880 HDEF_1280 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924080.1 1182035 D 340054 CDS YP_002924081.1 238898400 7950881 complement(1182879..1183952) 1 NC_012751.1 hypothetical protein 1183952 7950881 HDEF_1281 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924081.1 1182879 R 340054 CDS YP_002924082.1 238898401 7950882 complement(1184399..1185745) 1 NC_012751.1 COG1570; exonuclease VII, large subunit 1185745 xseA 7950882 xseA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease VII, large subunit YP_002924082.1 1184399 R 340054 CDS YP_002924083.1 238898402 7950883 complement(1185861..1187477) 1 NC_012751.1 metallopeptidase 1187477 7950883 HDEF_1283 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) metallopeptidase YP_002924083.1 1185861 R 340054 CDS YP_002924084.1 238898403 7950884 complement(1187659..1189623) 1 NC_012751.1 extracellular metallopeptidase 1189623 7950884 HDEF_1284 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) extracellular metallopeptidase YP_002924084.1 1187659 R 340054 CDS YP_002924085.1 238898404 7950885 complement(1189676..1189771) 1 NC_012751.1 hypothetical protein 1189771 7950885 HDEF_1285 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924085.1 1189676 R 340054 CDS YP_002924086.1 238898405 7950886 1190029..1190163 1 NC_012751.1 hypothetical protein 1190163 7950886 HDEF_1286 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924086.1 1190029 D 340054 CDS YP_002924087.1 238898406 7950887 1190206..1192905 1 NC_012751.1 COG0474; P-type ATPase, Mg2+ ATPase transport protein 1192905 mgtA 7950887 mgtA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) P-type ATPase, Mg2+ ATPase transport protein YP_002924087.1 1190206 D 340054 CDS YP_002924088.1 238898407 7950888 1193210..1193428 1 NC_012751.1 COG1278; RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA 1193428 cspE_2 7950888 cspE_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA YP_002924088.1 1193210 D 340054 CDS YP_002924089.1 238898408 7950889 complement(1193500..1194087) 1 NC_012751.1 COG3009; hypothetical protein 1194087 7950889 HDEF_1289 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924089.1 1193500 R 340054 CDS YP_002924090.1 238898409 7950890 complement(1194087..1195745) 1 NC_012751.1 COG3008; paraquat-inducible protein B 1195745 pqiB 7950890 pqiB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) paraquat-inducible protein B YP_002924090.1 1194087 R 340054 CDS YP_002924091.1 238898410 7950891 complement(1195742..1196965) 1 NC_012751.1 COG2995; paraquat-inducible protein A, membrane 1196965 pqiA 7950891 pqiA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) paraquat-inducible protein A, membrane YP_002924091.1 1195742 R 340054 CDS YP_002924092.1 238898411 7950892 complement(1197050..1197142) 1 NC_012751.1 hypothetical protein 1197142 7950892 HDEF_1292 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924092.1 1197050 R 340054 CDS YP_002924093.1 238898412 7950893 complement(1197132..1197293) 1 NC_012751.1 hypothetical protein 1197293 7950893 HDEF_1293 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924093.1 1197132 R 340054 CDS YP_002924094.1 238898413 7950894 complement(1197377..1197901) 1 NC_012751.1 N terminal truncation; COG3468; type V secretory pathway, adhesin 1197901 7950894 HDEF_1294 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type V secretory pathway, adhesin YP_002924094.1 1197377 R 340054 CDS YP_002924095.1 238898414 7950895 complement(1197996..1198400) 1 NC_012751.1 ISHde1, transposase 1198400 7950895 HDEF_1295 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924095.1 1197996 R 340054 CDS YP_002924096.1 238898415 7950896 complement(1198441..1198818) 1 NC_012751.1 ISHde1, transposase 1198818 7950896 HDEF_1296 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924096.1 1198441 R 340054 CDS YP_002924097.1 238898416 7950898 1201126..1210905 1 NC_012751.1 pertactin 1210905 7950898 HDEF_1298 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pertactin YP_002924097.1 1201126 D 340054 CDS YP_002924098.1 238898417 7950899 1210906..1211163 1 NC_012751.1 hypothetical protein 1211163 7950899 HDEF_1299 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924098.1 1210906 D 340054 CDS YP_002924099.1 238898418 7950900 1211160..1211753 1 NC_012751.1 N terminal truncation; COG3468; hypothetical protein 1211753 7950900 HDEF_1300 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924099.1 1211160 D 340054 CDS YP_002924100.1 238898419 7950901 complement(1211828..1213210) 1 NC_012751.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1213210 radA 7950901 radA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA repair protein RadA YP_002924100.1 1211828 R 340054 CDS YP_002924101.1 238898420 7950902 complement(1213383..1215149) 1 NC_012751.1 hypothetical protein 1215149 7950902 HDEF_1302 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924101.1 1213383 R 340054 CDS YP_002924102.1 238898421 7950903 complement(1215285..1215434) 1 NC_012751.1 hypothetical protein 1215434 7950903 HDEF_1303 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924102.1 1215285 R 340054 CDS YP_002924103.1 238898422 7950905 1215609..1216376 1 NC_012751.1 COG0500; methyltransferase 1216376 7950905 HDEF_1305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methyltransferase YP_002924103.1 1215609 D 340054 CDS YP_002924104.1 238898423 7950906 1216380..1217354 1 NC_012751.1 COG0500; methyltransferase 1217354 7950906 HDEF_1306 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methyltransferase YP_002924104.1 1216380 D 340054 CDS YP_002924105.1 238898424 7950907 complement(1217617..1220283) 1 NC_012751.1 COG1048; aconitate hydratase 1 1220283 acnA 7950907 acnA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aconitate hydratase 1 YP_002924105.1 1217617 R 340054 CDS YP_002924106.1 238898425 7950908 complement(1220912..1222099) 1 NC_012751.1 COG0743; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1222099 dxr 7950908 dxr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002924106.1 1220912 R 340054 CDS YP_002924107.1 238898426 7950909 complement(1222205..1222762) 1 NC_012751.1 COG0233; ribosome recycling factor 1222762 frr 7950909 frr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribosome recycling factor YP_002924107.1 1222205 R 340054 CDS YP_002924108.1 238898427 7950910 complement(1222815..1223546) 1 NC_012751.1 COG0528; uridylate kinase 1223546 pyrH 7950910 pyrH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) uridylate kinase YP_002924108.1 1222815 R 340054 CDS YP_002924109.1 238898428 7950911 complement(1223551..1224411) 1 NC_012751.1 COG0264; protein chain elongation factor EF-Ts 1224411 tsf 7950911 tsf Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein chain elongation factor EF-Ts YP_002924109.1 1223551 R 340054 CDS YP_002924110.1 238898429 7950912 complement(1224453..1225178) 1 NC_012751.1 COG0052; 30S ribosomal subunit protein S2 1225178 rpsB 7950912 rpsB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S2 YP_002924110.1 1224453 R 340054 CDS YP_002924111.1 238898430 7950913 complement(1225757..1226647) 1 NC_012751.1 catalyzes the hydrolysis of phosphatidylcholine; phospholipase A 1226647 pldA 7950913 pldA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phospholipase A YP_002924111.1 1225757 R 340054 CDS YP_002924112.1 238898431 7950914 1227304..1227396 1 NC_012751.1 ISHde2, transposase 1227396 7950914 HDEF_1314 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924112.1 1227304 D 340054 CDS YP_002924113.1 238898432 7951959 1234355..1235095 1 NC_012751.1 COG5464; transposase 1235095 7951959 HDEF_1322 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924113.1 1234355 D 340054 CDS YP_002924114.1 238898433 7950923 1235099..1235611 1 NC_012751.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1235611 mpg_2 7950923 mpg_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-methyladenine DNA glycosylase YP_002924114.1 1235099 D 340054 CDS YP_002924115.1 238898434 7950924 complement(1235999..1236136) 1 NC_012751.1 hypothetical protein 1236136 7950924 HDEF_1325 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924115.1 1235999 R 340054 CDS YP_002924116.1 238898435 7950926 1236107..1236727 1 NC_012751.1 transcriptional regulator 1236727 7950926 HDEF_1324 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924116.1 1236107 D 340054 CDS YP_002924117.1 238898436 7950925 1237017..1237112 1 NC_012751.1 hypothetical protein 1237112 7950925 HDEF_1326 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924117.1 1237017 D 340054 CDS YP_002924118.1 238898437 7950927 complement(1237155..1237361) 1 NC_012751.1 hypothetical protein 1237361 7950927 HDEF_1327 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924118.1 1237155 R 340054 CDS YP_002924119.1 238898438 7950928 1237574..1237891 1 NC_012751.1 hypothetical protein 1237891 7950928 HDEF_1328 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924119.1 1237574 D 340054 CDS YP_002924120.1 238898439 7950929 1237916..1238143 1 NC_012751.1 hypothetical protein 1238143 7950929 HDEF_1329 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924120.1 1237916 D 340054 CDS YP_002924121.1 238898440 7950931 1238649..1238924 1 NC_012751.1 TriB conjugal transfer protein 1238924 triB 7950931 triB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriB conjugal transfer protein YP_002924121.1 1238649 D 340054 CDS YP_002924122.1 238898441 7950933 1241699..1242445 1 NC_012751.1 TriD conjugal transfer protein 1242445 triD 7950933 triD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriD conjugal transfer protein YP_002924122.1 1241699 D 340054 CDS YP_002924123.1 238898442 7950934 1242442..1242729 1 NC_012751.1 addiction module 1242729 7950934 HDEF_1334 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002924123.1 1242442 D 340054 CDS YP_002924124.1 238898443 7950935 1242803..1243777 1 NC_012751.1 TriE conjugal transfer protein 1243777 triE 7950935 triE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriE conjugal transfer protein YP_002924124.1 1242803 D 340054 CDS YP_002924125.1 238898444 7950936 complement(1243835..1244431) 1 NC_012751.1 COG1961; Tn5501-like resolvase 1244431 7950936 HDEF_1336 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Tn5501-like resolvase YP_002924125.1 1243835 R 340054 CDS YP_002924126.1 238898445 7950937 complement(1244616..1244723) 1 NC_012751.1 hypothetical protein 1244723 7950937 HDEF_1337 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924126.1 1244616 R 340054 CDS YP_002924127.1 238898446 7950938 1244785..1245477 1 NC_012751.1 TriG conjugal transfer protein 1245477 triG 7950938 triG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriG conjugal transfer protein YP_002924127.1 1244785 D 340054 CDS YP_002924128.1 238898447 7950939 1245480..1246409 1 NC_012751.1 TriH conjugal transfer protein 1246409 triH 7950939 triH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriH conjugal transfer protein YP_002924128.1 1245480 D 340054 CDS YP_002924129.1 238898448 7950940 1246574..1247785 1 NC_012751.1 TriI conjugal transfer protein 1247785 triI 7950940 triI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriI conjugal transfer protein YP_002924129.1 1246574 D 340054 CDS YP_002924130.1 238898449 7950941 1247782..1248813 1 NC_012751.1 TriJ conjugal transfer protein 1248813 triJ 7950941 triJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TriJ conjugal transfer protein YP_002924130.1 1247782 D 340054 CDS YP_002924131.1 238898450 7950942 1248800..1250653 1 NC_012751.1 TaxB conjugal transfer protein 1250653 taxB 7950942 taxB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TaxB conjugal transfer protein YP_002924131.1 1248800 D 340054 CDS YP_002924132.1 238898451 7950943 1250696..1251613 1 NC_012751.1 hypothetical protein 1251613 7950943 HDEF_1343 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924132.1 1250696 D 340054 CDS YP_002924133.1 238898452 7950944 1251700..1252077 1 NC_012751.1 ISHde1, transposase 1252077 7950944 HDEF_1344 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924133.1 1251700 D 340054 CDS YP_002924134.1 238898453 7950945 1252118..1252522 1 NC_012751.1 ISHde1, transposase 1252522 7950945 HDEF_1345 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924134.1 1252118 D 340054 CDS YP_002924135.1 238898454 7950946 1252547..1252963 1 NC_012751.1 PilM type IV pilus biogenesis protein 1252963 pilM_2 7950946 pilM_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilM type IV pilus biogenesis protein YP_002924135.1 1252547 D 340054 CDS YP_002924136.1 238898455 7950947 1253062..1254702 1 NC_012751.1 PilN type IV pilus biogenesis outer membrane protein 1254702 pilN_3 7950947 pilN_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilN type IV pilus biogenesis outer membrane protein YP_002924136.1 1253062 D 340054 CDS YP_002924137.1 238898456 7950948 1254702..1255994 1 NC_012751.1 PilO type IV pilus biogenesis outer membrane protein 1255994 pilO_2 7950948 pilO_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilO type IV pilus biogenesis outer membrane protein YP_002924137.1 1254702 D 340054 CDS YP_002924138.1 238898457 7950949 1255981..1256445 1 NC_012751.1 type IV pilus protein 1256445 7950949 HDEF_1349 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV pilus protein YP_002924138.1 1255981 D 340054 CDS YP_002924139.1 238898458 7950950 1256463..1257971 1 NC_012751.1 PilQ type IV pilus biogenesis protein ATPase 1257971 pilQ_3 7950950 pilQ_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus biogenesis protein ATPase YP_002924139.1 1256463 D 340054 CDS YP_002924140.1 238898459 7950951 complement(1258010..1258489) 1 NC_012751.1 COG0071; heat shock chaperone 1258489 ibp 7950951 ibp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) heat shock chaperone YP_002924140.1 1258010 R 340054 CDS YP_002924141.1 238898460 7950952 1258514..1260004 1 NC_012751.1 PilV type IV pilus minor pilin subunit, shufflon protein 1260004 pilV_2 7950952 pilV_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilV type IV pilus minor pilin subunit, shufflon protein YP_002924141.1 1258514 D 340054 CDS YP_002924142.1 238898461 7950953 complement(1260157..1260465) 1 NC_012751.1 plasmid stability protein StbC 1260465 stbC_1 7950953 stbC_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid stability protein StbC YP_002924142.1 1260157 R 340054 CDS YP_002924143.1 238898462 7950954 complement(1260467..1261183) 1 NC_012751.1 plasmid stability protein StbB 1261183 stbB_2 7950954 stbB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid stability protein StbB YP_002924143.1 1260467 R 340054 CDS YP_002924144.1 238898463 7950955 complement(1261192..1261512) 1 NC_012751.1 plasmid stability protein StbA 1261512 stbA 7950955 stbA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid stability protein StbA YP_002924144.1 1261192 R 340054 CDS YP_002924145.1 238898464 7950956 1261631..1261756 1 NC_012751.1 hypothetical protein 1261756 7950956 HDEF_1356 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924145.1 1261631 D 340054 CDS YP_002924146.1 238898465 7950957 complement(1262556..1262651) 1 NC_012751.1 hypothetical protein 1262651 7950957 HDEF_1357 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924146.1 1262556 R 340054 CDS YP_002924147.1 238898466 7950958 1262692..1263576 1 NC_012751.1 plasmid replication initiator protein 1263576 repA_4 7950958 repA_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002924147.1 1262692 D 340054 CDS YP_002924148.1 238898467 7950960 complement(1264002..1264328) 1 NC_012751.1 hypothetical protein 1264328 7950960 HDEF_1360 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924148.1 1264002 R 340054 CDS YP_002924149.1 238898468 7950961 complement(1264335..1264436) 1 NC_012751.1 hypothetical protein 1264436 7950961 HDEF_1361 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924149.1 1264335 R 340054 CDS YP_002924150.1 238898469 7950962 complement(1264433..1265386) 1 NC_012751.1 plasmid replication initiator protein 1265386 repA_5 7950962 repA_5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002924150.1 1264433 R 340054 CDS YP_002924151.1 238898470 7950964 complement(1266432..1266971) 1 NC_012751.1 C terminal truncation; PilQ type IV pilus protein 1266971 pilQ_4 7950964 pilQ_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus protein YP_002924151.1 1266432 R 340054 CDS YP_002924152.1 238898471 7950965 complement(1267417..1267746) 1 NC_012751.1 addiction module toxin 1267746 7950965 HDEF_1366 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002924152.1 1267417 R 340054 CDS YP_002924153.1 238898472 7950967 complement(1267748..1267975) 1 NC_012751.1 addiction module antitoxin 1267975 7950967 HDEF_1367 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002924153.1 1267748 R 340054 CDS YP_002924154.1 238898473 7950969 1269375..1269494 1 NC_012751.1 hypothetical protein 1269494 7950969 HDEF_1369 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924154.1 1269375 D 340054 CDS YP_002924155.1 238898474 7950970 complement(1269638..1271140) 1 NC_012751.1 hypothetical protein 1271140 7950970 HDEF_1370 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924155.1 1269638 R 340054 CDS YP_002924156.1 238898475 7950971 complement(1271624..1272028) 1 NC_012751.1 ISHde1, transposase 1272028 7950971 HDEF_1371 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924156.1 1271624 R 340054 CDS YP_002924157.1 238898476 7950972 complement(1272069..1272446) 1 NC_012751.1 ISHde1, transposase 1272446 7950972 HDEF_1372 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924157.1 1272069 R 340054 CDS YP_002924158.1 238898477 7950973 1272578..1272763 1 NC_012751.1 N terminal truncation; COG5464; hypothetical protein 1272763 7950973 HDEF_1373 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924158.1 1272578 D 340054 CDS YP_002924159.1 238898478 7950974 complement(1272948..1273313) 1 NC_012751.1 N terminus, interrupted by GII intron; COG0371; glycerol dehydrogenase 1273313 7950974 HDEF_1374 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycerol dehydrogenase YP_002924159.1 1272948 R 340054 CDS YP_002924160.1 238898479 7951960 1273736..1275418 1 NC_012751.1 reverse transcriptase 1275418 7951960 HDEF_1375 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924160.1 1273736 D 340054 CDS YP_002924161.1 238898480 7950977 complement(1276641..1276793) 1 NC_012751.1 hypothetical protein 1276793 7950977 HDEF_1377 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924161.1 1276641 R 340054 CDS YP_002924162.1 238898481 7950978 complement(1276911..1277213) 1 NC_012751.1 COG1396; phage transcriptional regulatory protein 1277213 cro_1 7950978 cro_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage transcriptional regulatory protein YP_002924162.1 1276911 R 340054 CDS YP_002924163.1 238898482 7950980 1277655..1277801 1 NC_012751.1 hypothetical protein 1277801 7950980 HDEF_1380 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924163.1 1277655 D 340054 CDS YP_002924164.1 238898483 7950981 complement(1277841..1278167) 1 NC_012751.1 C terminal truncation; COG5464; transposase 1278167 7950981 HDEF_1381 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924164.1 1277841 R 340054 CDS YP_002924165.1 238898484 7950982 complement(1278692..1279195) 1 NC_012751.1 COG0454; GCN5-related N-acetyltransferase 1279195 7950982 HDEF_1382 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GCN5-related N-acetyltransferase YP_002924165.1 1278692 R 340054 CDS YP_002924166.1 238898485 7950983 complement(1279192..1279464) 1 NC_012751.1 COG4453; hypothetical protein 1279464 7950983 HDEF_1383 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924166.1 1279192 R 340054 CDS YP_002924167.1 238898486 7950984 complement(1279792..1279962) 1 NC_012751.1 hypothetical protein 1279962 7950984 HDEF_1384 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924167.1 1279792 R 340054 CDS YP_002924168.1 238898487 7950986 1281334..1283106 1 NC_012751.1 COG0323; enzyme in methyl-directed mismatch repair 1283106 mutL_2 7950986 mutL_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) enzyme in methyl-directed mismatch repair YP_002924168.1 1281334 D 340054 CDS YP_002924169.1 238898488 7950987 1283118..1283213 1 NC_012751.1 hypothetical protein 1283213 7950987 HDEF_1387 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924169.1 1283118 D 340054 CDS YP_002924170.1 238898489 7950989 complement(1283538..1283684) 1 NC_012751.1 hypothetical protein 1283684 7950989 HDEF_1389 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924170.1 1283538 R 340054 CDS YP_002924171.1 238898490 7950990 1284095..1284229 1 NC_012751.1 hypothetical protein 1284229 7950990 HDEF_1390 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924171.1 1284095 D 340054 CDS YP_002924172.1 238898491 7950991 1284283..1284768 1 NC_012751.1 hypothetical protein 1284768 7950991 HDEF_1391 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924172.1 1284283 D 340054 CDS YP_002924173.1 238898492 7950993 complement(1285562..1285903) 1 NC_012751.1 COG2337; addiction module, toxin ChpB 1285903 chpB 7950993 chpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, toxin ChpB YP_002924173.1 1285562 R 340054 CDS YP_002924174.1 238898493 7950994 complement(1285903..1286154) 1 NC_012751.1 COG2336; addiction module, antitoxin ChpS 1286154 chpS 7950994 chpS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, antitoxin ChpS YP_002924174.1 1285903 R 340054 CDS YP_002924175.1 238898494 7950995 complement(1286539..1287180) 1 NC_012751.1 COG1961; resolvase 1287180 7950995 HDEF_1395 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) resolvase YP_002924175.1 1286539 R 340054 CDS YP_002924176.1 238898495 7950996 complement(1287304..1287438) 1 NC_012751.1 hypothetical protein 1287438 7950996 HDEF_1396 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924176.1 1287304 R 340054 CDS YP_002924177.1 238898496 7950997 complement(1287568..1287663) 1 NC_012751.1 hypothetical protein 1287663 7950997 HDEF_1397 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924177.1 1287568 R 340054 CDS YP_002924178.1 238898497 7950998 1287816..1288445 1 NC_012751.1 plasmid partition protein ParA-like protein 1288445 7950998 HDEF_1398 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002924178.1 1287816 D 340054 CDS YP_002924179.1 238898498 7950999 1288485..1288715 1 NC_012751.1 partitioning protein 1288715 7950999 HDEF_1399 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) partitioning protein YP_002924179.1 1288485 D 340054 CDS YP_002924180.1 238898499 7951000 1289009..1289428 1 NC_012751.1 COG0229; methionine sulfoxide reductase 1289428 msrB_1 7951000 msrB_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methionine sulfoxide reductase YP_002924180.1 1289009 D 340054 CDS YP_002924181.1 238898500 7951001 1289783..1289899 1 NC_012751.1 hypothetical protein 1289899 7951001 HDEF_1401 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924181.1 1289783 D 340054 CDS YP_002924182.1 238898501 7951002 1290035..1290271 1 NC_012751.1 hypothetical protein 1290271 7951002 HDEF_1402 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924182.1 1290035 D 340054 CDS YP_002924183.1 238898502 7951003 complement(1290310..1290906) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_1404 and HDEF_1405; RTX-family protein-20 1290906 rtxA_20 7951003 rtxA_20 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-20 YP_002924183.1 1290310 R 340054 CDS YP_002924184.1 238898503 7951004 complement(1290863..1291837) 1 NC_012751.1 Possible C and N terminal truncations with HDEF_1403 and HDEF_1405; RTX-family protein-19 1291837 rtxA_19 7951004 rtxA_19 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-19 YP_002924184.1 1290863 R 340054 CDS YP_002924185.1 238898504 7951005 complement(1291813..1295676) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_1403 and HDEF_1404; RTX-family protein-18 1295676 rtxA_18 7951005 rtxA_18 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-18 YP_002924185.1 1291813 R 340054 CDS YP_002924186.1 238898505 7951006 1296057..1296167 1 NC_012751.1 hypothetical protein 1296167 7951006 HDEF_1406 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924186.1 1296057 D 340054 CDS YP_002924187.1 238898506 7951007 1296568..1296876 1 NC_012751.1 MobB relaxase/mobilization protein 1296876 mobB_4 7951007 mobB_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002924187.1 1296568 D 340054 CDS YP_002924188.1 238898507 7951008 1296877..1298769 1 NC_012751.1 MobA relaxase/mobilization protein 1298769 mobA_4 7951008 mobA_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobA relaxase/mobilization protein YP_002924188.1 1296877 D 340054 CDS YP_002924189.1 238898508 7951009 1298900..1299259 1 NC_012751.1 COG0776; DNA-binding protein HU-alpha (HU-2) 1299259 hu 7951009 hu Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding protein HU-alpha (HU-2) YP_002924189.1 1298900 D 340054 CDS YP_002924190.1 238898509 7951012 1302064..1302531 1 NC_012751.1 N terminal truncation; COG5464; transposase 1302531 7951012 HDEF_1412 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924190.1 1302064 D 340054 CDS YP_002924191.1 238898510 7951013 1302553..1303104 1 NC_012751.1 conjugal transfer fertility inhibition protein 1303104 finO_2 7951013 finO_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) conjugal transfer fertility inhibition protein YP_002924191.1 1302553 D 340054 CDS YP_002924192.1 238898511 7951014 complement(1303111..1304178) 1 NC_012751.1 C terminus, interrupted by GII intron; TrbC conjugal transfer protein 1304178 trbC_3 7951014 trbC_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbC conjugal transfer protein YP_002924192.1 1303111 R 340054 CDS YP_002924193.1 238898512 7951962 1304601..1306283 1 NC_012751.1 reverse transcriptase 1306283 7951962 HDEF_1415 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924193.1 1304601 D 340054 CDS YP_002924194.1 238898513 7951017 complement(1306478..1306738) 1 NC_012751.1 TraK conjugal transfer protein 1306738 traK_2 7951017 traK_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraK conjugal transfer protein YP_002924194.1 1306478 R 340054 CDS YP_002924195.1 238898514 7951018 complement(1306800..1307951) 1 NC_012751.1 TraJ conjugal transfer protein 1307951 traJ_2 7951018 traJ_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraJ conjugal transfer protein YP_002924195.1 1306800 R 340054 CDS YP_002924196.1 238898515 7951019 complement(1307938..1308747) 1 NC_012751.1 TraI conjugal transfer protein 1308747 traI_2 7951019 traI_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraI conjugal transfer protein YP_002924196.1 1307938 R 340054 CDS YP_002924197.1 238898516 7951020 complement(1308744..1309187) 1 NC_012751.1 TraH conjugal transfer protein 1309187 traH_2 7951020 traH_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraH conjugal transfer protein YP_002924197.1 1308744 R 340054 CDS YP_002924198.1 238898517 7951021 complement(1309241..1309711) 1 NC_012751.1 COG0741; PilT lytic transglycosylase 1309711 pilT_4 7951021 pilT_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilT lytic transglycosylase YP_002924198.1 1309241 R 340054 CDS YP_002924199.1 238898518 7951022 complement(1309754..1310374) 1 NC_012751.1 type IV pilus leader peptidase 1310374 7951022 HDEF_1422 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV pilus leader peptidase YP_002924199.1 1309754 R 340054 CDS YP_002924200.1 238898519 7951023 complement(1310380..1310811) 1 NC_012751.1 PilM type IV pilus biogenesis protein 1310811 pilM_3 7951023 pilM_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilM type IV pilus biogenesis protein YP_002924200.1 1310380 R 340054 CDS YP_002924201.1 238898520 7951024 complement(1310861..1312225) 1 NC_012751.1 PilV type IV pilus minor pilin subunit, shufflon protein 1312225 pilV_3 7951024 pilV_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilV type IV pilus minor pilin subunit, shufflon protein YP_002924201.1 1310861 R 340054 CDS YP_002924202.1 238898521 7951025 complement(1312478..1312987) 1 NC_012751.1 PilS2 type IV pilus biosynthesis protein 1312987 pilS2_2 7951025 pilS2_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilS2 type IV pilus biosynthesis protein YP_002924202.1 1312478 R 340054 CDS YP_002924203.1 238898522 7951027 complement(1314049..1315596) 1 NC_012751.1 PilQ type IV pilus biogenesis protein ATPase 1315596 pilQ_5 7951027 pilQ_5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus biogenesis protein ATPase YP_002924203.1 1314049 R 340054 CDS YP_002924204.1 238898523 7951028 complement(1315593..1316003) 1 NC_012751.1 type IV pilus protein 1316003 pilP_2 7951028 pilP_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV pilus protein YP_002924204.1 1315593 R 340054 CDS YP_002924205.1 238898524 7951029 complement(1315990..1317300) 1 NC_012751.1 PilO type IV pilus biogenesis outer membrane protein 1317300 pilO_3 7951029 pilO_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilO type IV pilus biogenesis outer membrane protein YP_002924205.1 1315990 R 340054 CDS YP_002924206.1 238898525 7951031 1317725..1318063 1 NC_012751.1 addiction module antitoxin 1318063 7951031 HDEF_1431 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002924206.1 1317725 D 340054 CDS YP_002924207.1 238898526 7951033 complement(1319633..1319938) 1 NC_012751.1 N terminal truncation; PilL type IV pilus biogenesis protein 1319938 pilL_2 7951033 pilL_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilL type IV pilus biogenesis protein YP_002924207.1 1319633 R 340054 CDS YP_002924208.1 238898527 7951034 complement(1320212..1320370) 1 NC_012751.1 hypothetical protein 1320370 7951034 HDEF_1434 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924208.1 1320212 R 340054 CDS YP_002924209.1 238898528 7951035 complement(1320566..1321030) 1 NC_012751.1 NusG-type transcription antiterminator 1321030 7951035 HDEF_1435 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NusG-type transcription antiterminator YP_002924209.1 1320566 R 340054 CDS YP_002924210.1 238898529 7951036 complement(1321183..1321407) 1 NC_012751.1 hypothetical protein 1321407 7951036 HDEF_1436 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924210.1 1321183 R 340054 CDS YP_002924211.1 238898530 7951037 complement(1321611..1322015) 1 NC_012751.1 ISHde1, transposase 1322015 7951037 HDEF_1437 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924211.1 1321611 R 340054 CDS YP_002924212.1 238898531 7951038 complement(1322056..1322433) 1 NC_012751.1 ISHde1, transposase 1322433 7951038 HDEF_1438 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924212.1 1322056 R 340054 CDS YP_002924213.1 238898532 7951039 complement(1322484..1323347) 1 NC_012751.1 C terminal truncation; COG4653; phage capsid protein 1323347 7951039 HDEF_1439 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage capsid protein YP_002924213.1 1322484 R 340054 CDS YP_002924214.1 238898533 7951040 complement(1323358..1323957) 1 NC_012751.1 COG3740; phage capsid protease 1323957 7951040 HDEF_1440 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage capsid protease YP_002924214.1 1323358 R 340054 CDS YP_002924215.1 238898534 7951041 complement(1323950..1325188) 1 NC_012751.1 COG4695; phage portal protein 1325188 7951041 HDEF_1441 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage portal protein YP_002924215.1 1323950 R 340054 CDS YP_002924216.1 238898535 7951042 complement(1325178..1325339) 1 NC_012751.1 hypothetical protein 1325339 7951042 HDEF_1442 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924216.1 1325178 R 340054 CDS YP_002924217.1 238898536 7951043 1325398..1325775 1 NC_012751.1 ISHde1, transposase 1325775 7951043 HDEF_1443 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924217.1 1325398 D 340054 CDS YP_002924218.1 238898537 7951044 1325816..1326220 1 NC_012751.1 ISHde1, transposase 1326220 7951044 HDEF_1444 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924218.1 1325816 D 340054 CDS YP_002924219.1 238898538 7951045 complement(1326240..1327997) 1 NC_012751.1 phage terminase, large subunit 1327997 7951045 HDEF_1445 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage terminase, large subunit YP_002924219.1 1326240 R 340054 CDS YP_002924220.1 238898539 7951046 complement(1327997..1328473) 1 NC_012751.1 phage terminase, small subunit 1328473 7951046 HDEF_1446 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage terminase, small subunit YP_002924220.1 1327997 R 340054 CDS YP_002924221.1 238898540 7951047 1328688..1328945 1 NC_012751.1 COG3077; addiction module antitoxin 1328945 7951047 HDEF_1447 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002924221.1 1328688 D 340054 CDS YP_002924222.1 238898541 7951048 1328932..1329213 1 NC_012751.1 COG3041; addiction module toxin 1329213 7951048 HDEF_1448 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002924222.1 1328932 D 340054 CDS YP_002924223.1 238898542 7951049 1329256..1329705 1 NC_012751.1 hypothetical protein 1329705 7951049 HDEF_1449 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924223.1 1329256 D 340054 CDS YP_002924224.1 238898543 7951050 complement(1329503..1329916) 1 NC_012751.1 hypothetical protein 1329916 7951050 HDEF_1450 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924224.1 1329503 R 340054 CDS YP_002924225.1 238898544 7951051 complement(1329917..1330285) 1 NC_012751.1 COG1403; hypothetical protein 1330285 7951051 HDEF_1451 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924225.1 1329917 R 340054 CDS YP_002924226.1 238898545 7951052 complement(1330266..1330595) 1 NC_012751.1 hypothetical protein 1330595 7951052 HDEF_1452 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924226.1 1330266 R 340054 CDS YP_002924227.1 238898546 7951053 complement(1330612..1330920) 1 NC_012751.1 hypothetical protein 1330920 7951053 HDEF_1453 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924227.1 1330612 R 340054 CDS YP_002924228.1 238898547 7951054 complement(1330917..1331246) 1 NC_012751.1 hypothetical protein 1331246 7951054 HDEF_1454 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924228.1 1330917 R 340054 CDS YP_002924229.1 238898548 7951055 complement(1331233..1331730) 1 NC_012751.1 phage lysis protein, endopeptidase 1331730 7951055 HDEF_1455 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage lysis protein, endopeptidase YP_002924229.1 1331233 R 340054 CDS YP_002924230.1 238898549 7951056 complement(1331730..1332440) 1 NC_012751.1 phage protein KilA 1332440 7951056 HDEF_1456 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage protein KilA YP_002924230.1 1331730 R 340054 CDS YP_002924231.1 238898550 7951057 complement(1332792..1332998) 1 NC_012751.1 hypothetical protein 1332998 7951057 HDEF_1457 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924231.1 1332792 R 340054 CDS YP_002924232.1 238898551 7951058 complement(1333020..1333547) 1 NC_012751.1 phage anti-repressor protein 1333547 7951058 HDEF_1458 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage anti-repressor protein YP_002924232.1 1333020 R 340054 CDS YP_002924233.1 238898552 7951059 complement(1333722..1334219) 1 NC_012751.1 COG3772; phage lysozyme 1334219 7951059 HDEF_1459 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage lysozyme YP_002924233.1 1333722 R 340054 CDS YP_002924234.1 238898553 7951060 complement(1334212..1334403) 1 NC_012751.1 hypothetical protein 1334403 7951060 HDEF_1460 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924234.1 1334212 R 340054 CDS YP_002924235.1 238898554 7951061 complement(1334555..1334959) 1 NC_012751.1 ISHde1, transposase 1334959 7951061 HDEF_1461 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924235.1 1334555 R 340054 CDS YP_002924236.1 238898555 7951062 complement(1335000..1335377) 1 NC_012751.1 ISHde1, transposase 1335377 7951062 HDEF_1462 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924236.1 1335000 R 340054 CDS YP_002924237.1 238898556 7951063 complement(1335432..1335644) 1 NC_012751.1 C terminal truncation; COG0388; hypothetical protein 1335644 7951063 HDEF_1463 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924237.1 1335432 R 340054 CDS YP_002924238.1 238898557 7951064 1335692..1336963 1 NC_012751.1 cytosine transport protein (NCS1 family) 1336963 codB_2 7951064 codB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytosine transport protein (NCS1 family) YP_002924238.1 1335692 D 340054 CDS YP_002924239.1 238898558 7951067 1339125..1339244 1 NC_012751.1 hypothetical protein 1339244 7951067 HDEF_1467 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924239.1 1339125 D 340054 CDS YP_002924240.1 238898559 7951068 complement(1339388..1340890) 1 NC_012751.1 hypothetical protein 1340890 7951068 HDEF_1468 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924240.1 1339388 R 340054 CDS YP_002924241.1 238898560 7951069 1341303..1341434 1 NC_012751.1 hypothetical protein 1341434 7951069 HDEF_1469 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924241.1 1341303 D 340054 CDS YP_002924242.1 238898561 7951070 1341447..1341773 1 NC_012751.1 N and C terminal truncations; COG0158; fructose-bisphosphatase 1341773 fbp_2 7951070 fbp_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fructose-bisphosphatase YP_002924242.1 1341447 D 340054 CDS YP_002924243.1 238898562 7951071 complement(1341781..1344738) 1 NC_012751.1 pertactin 1344738 7951071 HDEF_1471 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pertactin YP_002924243.1 1341781 R 340054 CDS YP_002924244.1 238898563 7951072 complement(1344751..1344864) 1 NC_012751.1 hypothetical protein 1344864 7951072 HDEF_1472 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924244.1 1344751 R 340054 CDS YP_002924245.1 238898564 7951073 1345514..1345765 1 NC_012751.1 hypothetical protein 1345765 7951073 HDEF_1473 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924245.1 1345514 D 340054 CDS YP_002924246.1 238898565 7951074 1345762..1346697 1 NC_012751.1 COG5464; transposase 1346697 7951074 HDEF_1474 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924246.1 1345762 D 340054 CDS YP_002924247.1 238898566 7951075 1346698..1346844 1 NC_012751.1 hypothetical protein 1346844 7951075 HDEF_1475 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924247.1 1346698 D 340054 CDS YP_002924248.1 238898567 7951076 complement(1346719..1346877) 1 NC_012751.1 hypothetical protein 1346877 7951076 HDEF_1476 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924248.1 1346719 R 340054 CDS YP_002924249.1 238898568 7951077 1347265..1350501 1 NC_012751.1 extracellular metallopeptidase 1350501 7951077 HDEF_1477 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) extracellular metallopeptidase YP_002924249.1 1347265 D 340054 CDS YP_002924250.1 238898569 7951078 1350921..1351820 1 NC_012751.1 COG5464; transposase 1351820 7951078 HDEF_1478 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924250.1 1350921 D 340054 CDS YP_002924251.1 238898570 7951079 1352010..1353302 1 NC_012751.1 COG0265; serine endoprotease (protease Do), membrane-associated 1353302 degP_1 7951079 degP_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine endoprotease (protease Do), membrane-associated YP_002924251.1 1352010 D 340054 CDS YP_002924252.1 238898571 7951080 1353644..1354042 1 NC_012751.1 C terminal truncation; COG3109; structural transport element 1354042 proQ_1 7951080 proQ_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) structural transport element YP_002924252.1 1353644 D 340054 CDS YP_002924253.1 238898572 7951081 1354042..1356135 1 NC_012751.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1356135 prc_1 7951081 prc_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carboxy-terminal protease YP_002924253.1 1354042 D 340054 CDS YP_002924254.1 238898573 7951082 1356188..1357066 1 NC_012751.1 COG0501; heat shock protein, integral membrane protein 1357066 htpX_1 7951082 htpX_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) heat shock protein, integral membrane protein YP_002924254.1 1356188 D 340054 CDS YP_002924255.1 238898574 7951083 1357153..1357977 1 NC_012751.1 COG3023; amidase and lipoprotein 1357977 amiD_1 7951083 amiD_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) amidase and lipoprotein YP_002924255.1 1357153 D 340054 CDS YP_002924256.1 238898575 7951084 complement(1358167..1358991) 1 NC_012751.1 COG3023; amidase and lipoprotein 1358991 amiD_2 7951084 amiD_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) amidase and lipoprotein YP_002924256.1 1358167 R 340054 CDS YP_002924257.1 238898576 7951085 complement(1359078..1359956) 1 NC_012751.1 COG0501; heat shock protein, integral membrane protein 1359956 htpX_2 7951085 htpX_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) heat shock protein, integral membrane protein YP_002924257.1 1359078 R 340054 CDS YP_002924258.1 238898577 7951086 complement(1360009..1362102) 1 NC_012751.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1362102 prc_2 7951086 prc_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carboxy-terminal protease YP_002924258.1 1360009 R 340054 CDS YP_002924259.1 238898578 7951087 complement(1362102..1362500) 1 NC_012751.1 C terminal truncation; COG3109; structural transport element 1362500 proQ_2 7951087 proQ_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) structural transport element YP_002924259.1 1362102 R 340054 CDS YP_002924260.1 238898579 7951088 complement(1362842..1364269) 1 NC_012751.1 COG0265; serine endoprotease (protease Do), membrane-associated 1364269 degP_2 7951088 degP_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine endoprotease (protease Do), membrane-associated YP_002924260.1 1362842 R 340054 CDS YP_002924261.1 238898580 7951089 complement(1364407..1365894) 1 NC_012751.1 forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase 1365894 dgt 7951089 dgt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) deoxyguanosinetriphosphate triphosphohydrolase YP_002924261.1 1364407 R 340054 CDS YP_002924262.1 238898581 7951090 1366013..1366726 1 NC_012751.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1366726 mtn 7951090 mtn Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002924262.1 1366013 D 340054 CDS YP_002924263.1 238898582 7951091 1366791..1367144 1 NC_012751.1 COG0278; glutaredoxin 1367144 7951091 HDEF_1491 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutaredoxin YP_002924263.1 1366791 D 340054 CDS YP_002924264.1 238898583 7951092 complement(1367150..1367815) 1 NC_012751.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1367815 dnaQ_2 7951092 dnaQ_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribonuclease T YP_002924264.1 1367150 R 340054 CDS YP_002924265.1 238898584 7951093 complement(1368032..1368859) 1 NC_012751.1 C terminal truncation; invasion protein transcriptional regulator 1368859 hilA 7951093 hilA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) invasion protein transcriptional regulator YP_002924265.1 1368032 R 340054 CDS YP_002924266.1 238898585 7951094 complement(1368999..1369340) 1 NC_012751.1 hypothetical protein 1369340 7951094 HDEF_1494 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924266.1 1368999 R 340054 CDS YP_002924267.1 238898586 7951095 1369381..1369746 1 NC_012751.1 hypothetical protein 1369746 orfC 7951095 orfC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924267.1 1369381 D 340054 CDS YP_002924268.1 238898587 7951096 1369957..1370727 1 NC_012751.1 type III invasion regulatory protein 1370727 invF 7951096 invF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III invasion regulatory protein YP_002924268.1 1369957 D 340054 CDS YP_002924269.1 238898588 7951097 1370746..1372407 1 NC_012751.1 COG1450; type III outer membrane secretin precursor 1372407 invG 7951097 invG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III outer membrane secretin precursor YP_002924269.1 1370746 D 340054 CDS YP_002924270.1 238898589 7951098 1372404..1373618 1 NC_012751.1 type III invasion protein 1373618 invE 7951098 invE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III invasion protein YP_002924270.1 1372404 D 340054 CDS YP_002924271.1 238898590 7951099 1373636..1375690 1 NC_012751.1 COG4789; type III needle complex export protein 1375690 invA 7951099 invA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex export protein YP_002924271.1 1373636 D 340054 CDS YP_002924272.1 238898591 7951100 1375713..1376138 1 NC_012751.1 type III secretion chaperone 1376138 invB 7951100 invB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion chaperone YP_002924272.1 1375713 D 340054 CDS YP_002924273.1 238898592 7951101 1376138..1377433 1 NC_012751.1 Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 1377433 invC 7951101 invC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP synthase SpaL YP_002924273.1 1376138 D 340054 CDS YP_002924274.1 238898593 7951102 1377417..1377872 1 NC_012751.1 type III needle complex assembly protein 1377872 spaM 7951102 spaM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex assembly protein YP_002924274.1 1377417 D 340054 CDS YP_002924275.1 238898594 7951103 1377857..1378945 1 NC_012751.1 weakly similar and syntenic to spaN of SPI-1; type III surface presentation of antigens protein 1378945 spaN 7951103 spaN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III surface presentation of antigens protein YP_002924275.1 1377857 D 340054 CDS YP_002924276.1 238898595 7951104 1378942..1379112 1 NC_012751.1 hypothetical protein 1379112 7951104 HDEF_1504 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924276.1 1378942 D 340054 CDS YP_002924277.1 238898596 7951105 1379290..1379979 1 NC_012751.1 type III surface presentation of antigens protein 1379979 spaO 7951105 spaO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III surface presentation of antigens protein YP_002924277.1 1379290 D 340054 CDS YP_002924278.1 238898597 7951106 1379991..1380656 1 NC_012751.1 part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 1380656 spaP 7951106 spaP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) surface presentation of antigens protein SpaP YP_002924278.1 1379991 D 340054 CDS YP_002924279.1 238898598 7951107 1380673..1380933 1 NC_012751.1 COG4794; type III needle complex export protein 1380933 spaQ 7951107 spaQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex export protein YP_002924279.1 1380673 D 340054 CDS YP_002924280.1 238898599 7951108 1380936..1381700 1 NC_012751.1 COG4791; type III needle complex export protein 1381700 spaR 7951108 spaR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III needle complex export protein YP_002924280.1 1380936 D 340054 CDS YP_002924281.1 238898600 7951109 1381876..1382925 1 NC_012751.1 Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 1382925 spaS 7951109 spaS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) surface presentation of antigens protein SpaS YP_002924281.1 1381876 D 340054 CDS YP_002924282.1 238898601 7951110 1383030..1383548 1 NC_012751.1 COG0457; type III secretion chaperone 1383548 sicA 7951110 sicA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion chaperone YP_002924282.1 1383030 D 340054 CDS YP_002924283.1 238898602 7951111 1383750..1385168 1 NC_012751.1 type III translocation machinery component 1385168 sipB 7951111 sipB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III translocation machinery component YP_002924283.1 1383750 D 340054 CDS YP_002924284.1 238898603 7951112 1385199..1386482 1 NC_012751.1 hypothetical protein 1386482 7951112 HDEF_1512 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924284.1 1385199 D 340054 CDS YP_002924285.1 238898604 7951113 1386562..1388223 1 NC_012751.1 hypothetical protein 1388223 7951113 HDEF_1513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924285.1 1386562 D 340054 CDS YP_002924286.1 238898605 7951114 1388175..1389392 1 NC_012751.1 hypothetical protein 1389392 7951114 HDEF_1514 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924286.1 1388175 D 340054 CDS YP_002924287.1 238898606 7951116 complement(1390057..1392591) 1 NC_012751.1 COG0188; DNA gyrase (type II topoisomerase), subunit A 1392591 gyrA 7951116 gyrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA gyrase (type II topoisomerase), subunit A YP_002924287.1 1390057 R 340054 CDS YP_002924288.1 238898607 7951117 1392722..1393453 1 NC_012751.1 COG2227; bifunctional 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase 1393453 ubiG 7951117 ubiG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase YP_002924288.1 1392722 D 340054 CDS YP_002924289.1 238898608 7951118 complement(1393485..1394615) 1 NC_012751.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase 1394615 rffA 7951118 rffA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TDP-4-oxo-6-deoxy-D-glucose transaminase YP_002924289.1 1393485 R 340054 CDS YP_002924290.1 238898609 7951119 complement(1394612..1396444) 1 NC_012751.1 hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones 1396444 arcB 7951119 arcB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones YP_002924290.1 1394612 R 340054 CDS YP_002924291.1 238898610 7951120 1396531..1397055 1 NC_012751.1 COG1495; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I 1397055 dsbB 7951120 dsbB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I YP_002924291.1 1396531 D 340054 CDS YP_002924292.1 238898611 7951121 1397336..1397680 1 NC_012751.1 COG0776; HU, DNA-binding transcriptional regulator, alpha subunit -3 1397680 hupA_3 7951121 hupA_3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) HU, DNA-binding transcriptional regulator, alpha subunit -3 YP_002924292.1 1397336 D 340054 CDS YP_002924293.1 238898612 7951122 1397876..1398718 1 NC_012751.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1398718 queF 7951122 queF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7-cyano-7-deazaguanine reductase YP_002924293.1 1397876 D 340054 CDS YP_002924294.1 238898613 7951123 1398767..1398943 1 NC_012751.1 hypothetical protein 1398943 7951123 HDEF_1523 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924294.1 1398767 D 340054 CDS YP_002924295.1 238898614 7951124 1398940..1400841 1 NC_012751.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1400841 speA 7951124 speA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine decarboxylase YP_002924295.1 1398940 D 340054 CDS YP_002924296.1 238898615 7951125 1400899..1402908 1 NC_012751.1 COG0021; transketolase 2, thiamin-binding, isozyme 1402908 tktB 7951125 tktB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transketolase 2, thiamin-binding, isozyme YP_002924296.1 1400899 D 340054 CDS YP_002924297.1 238898616 7951126 1403117..1404253 1 NC_012751.1 hypothetical protein 1404253 7951126 HDEF_1526 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924297.1 1403117 D 340054 CDS YP_002924298.1 238898617 7951128 1404828..1405484 1 NC_012751.1 COG2197; UvrY transcriptional regulator 1405484 uvrY 7951128 uvrY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UvrY transcriptional regulator YP_002924298.1 1404828 D 340054 CDS YP_002924299.1 238898618 7951129 1405485..1407308 1 NC_012751.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1407308 uvrC 7951129 uvrC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) excinuclease ABC subunit C YP_002924299.1 1405485 D 340054 CDS YP_002924300.1 238898619 7951130 1407522..1408070 1 NC_012751.1 COG0558; phosphatidylglycerophosphate synthetase 1408070 pgsA 7951130 pgsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylglycerophosphate synthetase YP_002924300.1 1407522 D 340054 CDS YP_002924301.1 238898620 7951134 1408659..1408775 1 NC_012751.1 hypothetical protein 1408775 7951134 HDEF_1534 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924301.1 1408659 D 340054 CDS YP_002924302.1 238898621 7951135 complement(1408756..1408908) 1 NC_012751.1 hypothetical protein 1408908 7951135 HDEF_1535 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924302.1 1408756 R 340054 CDS YP_002924303.1 238898622 7951136 complement(1409002..1409547) 1 NC_012751.1 COG0629; single-stranded DNA-binding protein 1409547 ssb 7951136 ssb Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) single-stranded DNA-binding protein YP_002924303.1 1409002 R 340054 CDS YP_002924304.1 238898623 7951137 complement(1409704..1409799) 1 NC_012751.1 hypothetical protein 1409799 7951137 HDEF_1537 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924304.1 1409704 R 340054 CDS YP_002924305.1 238898624 7951138 complement(1409831..1411048) 1 NC_012751.1 COG0617; fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase 1411048 cca 7951138 cca Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase YP_002924305.1 1409831 R 340054 CDS YP_002924306.1 238898625 7951139 complement(1411049..1412140) 1 NC_012751.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1412140 fbaA 7951139 fbaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fructose-bisphosphate aldolase YP_002924306.1 1411049 R 340054 CDS YP_002924307.1 238898626 7951140 complement(1412203..1413393) 1 NC_012751.1 COG0126; phosphoglycerate kinase 1413393 pgk 7951140 pgk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoglycerate kinase YP_002924307.1 1412203 R 340054 CDS YP_002924308.1 238898627 7951141 1413725..1414198 1 NC_012751.1 COG2062; phosphohistidine phosphatase 1414198 sixA 7951141 sixA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphohistidine phosphatase YP_002924308.1 1413725 D 340054 CDS YP_002924309.1 238898628 7951142 complement(1414220..1415605) 1 NC_012751.1 COG0215; cysteinyl-tRNA synthetase 1415605 cysS 7951142 cysS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cysteinyl-tRNA synthetase YP_002924309.1 1414220 R 340054 CDS YP_002924310.1 238898629 7951143 complement(1415694..1415795) 1 NC_012751.1 hypothetical protein 1415795 7951143 HDEF_1544 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924310.1 1415694 R 340054 CDS YP_002924311.1 238898630 7951145 1415715..1416482 1 NC_012751.1 COG2908; UDP-2,3-diacylglucosamine pyrophosphatase 1416482 lpxH 7951145 lpxH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-2,3-diacylglucosamine pyrophosphatase YP_002924311.1 1415715 D 340054 CDS YP_002924312.1 238898631 7951144 1416521..1417162 1 NC_012751.1 COG0526; periplasmic protein disulfide isomerase I 1417162 dsbA 7951144 dsbA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) periplasmic protein disulfide isomerase I YP_002924312.1 1416521 D 340054 CDS YP_002924313.1 238898632 7951146 complement(1417456..1418919) 1 NC_012751.1 hypothetical protein 1418919 7951146 HDEF_1546 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924313.1 1417456 R 340054 CDS YP_002924314.1 238898633 7951148 complement(1419729..1419902) 1 NC_012751.1 hypothetical protein 1419902 7951148 HDEF_1548 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924314.1 1419729 R 340054 CDS YP_002924315.1 238898634 7951149 1419993..1420667 1 NC_012751.1 N terminal truncation; hypothetical protein 1420667 7951149 HDEF_1549 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924315.1 1419993 D 340054 CDS YP_002924316.1 238898635 7951150 complement(1420798..1420944) 1 NC_012751.1 hypothetical protein 1420944 7951150 HDEF_1550 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924316.1 1420798 R 340054 CDS YP_002924317.1 238898636 7951151 1420952..1421215 1 NC_012751.1 hypothetical protein 1421215 7951151 HDEF_1551 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924317.1 1420952 D 340054 CDS YP_002924318.1 238898637 7951152 1421340..1421441 1 NC_012751.1 hypothetical protein 1421441 7951152 HDEF_1552 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924318.1 1421340 D 340054 CDS YP_002924319.1 238898638 7951153 1421383..1421487 1 NC_012751.1 hypothetical protein 1421487 7951153 HDEF_1553 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924319.1 1421383 D 340054 CDS YP_002924320.1 238898639 7951155 1422147..1422242 1 NC_012751.1 hypothetical protein 1422242 7951155 HDEF_1555 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924320.1 1422147 D 340054 CDS YP_002924321.1 238898640 7951156 1422242..1422436 1 NC_012751.1 N terminal truncation; COG5464; transposase 1422436 7951156 HDEF_1556 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924321.1 1422242 D 340054 CDS YP_002924322.1 238898641 7951158 complement(1423122..1423790) 1 NC_012751.1 N terminal truncation; IS4-like transposase 1423790 7951158 HDEF_1558 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) IS4-like transposase YP_002924322.1 1423122 R 340054 CDS YP_002924323.1 238898642 7951161 1423923..1424132 1 NC_012751.1 hypothetical protein 1424132 7951161 HDEF_1559 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924323.1 1423923 D 340054 CDS YP_002924324.1 238898643 7951160 complement(1423984..1424211) 1 NC_012751.1 hypothetical protein 1424211 7951160 HDEF_1561 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924324.1 1423984 R 340054 CDS YP_002924325.1 238898644 7951162 1424633..1424725 1 NC_012751.1 hypothetical protein 1424725 7951162 HDEF_1562 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924325.1 1424633 D 340054 CDS YP_002924326.1 238898645 7951163 1424736..1426232 1 NC_012751.1 hypothetical protein 1426232 7951163 HDEF_1563 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924326.1 1424736 D 340054 CDS YP_002924327.1 238898646 7951164 complement(1426317..1426487) 1 NC_012751.1 N terminal truncation; COG5525; tail fiber assembly protein 1426487 7951164 HDEF_1565 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tail fiber assembly protein YP_002924327.1 1426317 R 340054 CDS YP_002924328.1 238898647 7951166 1426452..1426616 1 NC_012751.1 hypothetical protein 1426616 7951166 HDEF_1564 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924328.1 1426452 D 340054 CDS YP_002924329.1 238898648 7951165 complement(1426682..1427092) 1 NC_012751.1 phage tail protein 1427092 7951165 HDEF_1566 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail protein YP_002924329.1 1426682 R 340054 CDS YP_002924330.1 238898649 7951167 complement(1427109..1427219) 1 NC_012751.1 hypothetical protein 1427219 7951167 HDEF_1567 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924330.1 1427109 R 340054 CDS YP_002924331.1 238898650 7951168 complement(1427528..1428004) 1 NC_012751.1 N terminal truncation; glycosyl hydrolase family protein 1428004 7951168 HDEF_1568 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyl hydrolase family protein YP_002924331.1 1427528 R 340054 CDS YP_002924332.1 238898651 7951169 1428064..1428276 1 NC_012751.1 hypothetical protein 1428276 7951169 HDEF_1569 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924332.1 1428064 D 340054 CDS YP_002924333.1 238898652 7951170 1428335..1428634 1 NC_012751.1 COG2963; ISHde3, transposase 1428634 7951170 HDEF_1570 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde3, transposase YP_002924333.1 1428335 D 340054 CDS YP_002924334.1 238898653 7951171 1428644..1428763 1 NC_012751.1 hypothetical protein 1428763 7951171 HDEF_1571 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924334.1 1428644 D 340054 CDS YP_002924335.1 238898654 7951172 1429030..1429653 1 NC_012751.1 pentapeptide repeat-containing protein 1429653 7951172 HDEF_1572 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pentapeptide repeat-containing protein YP_002924335.1 1429030 D 340054 CDS YP_002924336.1 238898655 7951173 complement(1429674..1430006) 1 NC_012751.1 hypothetical protein 1430006 7951173 HDEF_1573 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924336.1 1429674 R 340054 CDS YP_002924337.1 238898656 7951174 complement(1430041..1430268) 1 NC_012751.1 hypothetical protein 1430268 7951174 HDEF_1574 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924337.1 1430041 R 340054 CDS YP_002924338.1 238898657 7951175 1430629..1431237 1 NC_012751.1 phage repressor protein 1431237 7951175 HDEF_1575 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage repressor protein YP_002924338.1 1430629 D 340054 CDS YP_002924339.1 238898658 7951176 1431667..1431780 1 NC_012751.1 hypothetical protein 1431780 7951176 HDEF_1576 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924339.1 1431667 D 340054 CDS YP_002924340.1 238898659 7951177 complement(1431886..1432347) 1 NC_012751.1 similar to APSE protein P47; hypothetical protein 1432347 7951177 HDEF_1577 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924340.1 1431886 R 340054 CDS YP_002924341.1 238898660 7951178 complement(1432417..1432569) 1 NC_012751.1 hypothetical protein 1432569 7951178 HDEF_1578 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924341.1 1432417 R 340054 CDS YP_002924342.1 238898661 7951179 1432581..1432679 1 NC_012751.1 hypothetical protein 1432679 7951179 HDEF_1579 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924342.1 1432581 D 340054 CDS YP_002924343.1 238898662 7951180 1432676..1433047 1 NC_012751.1 C terminal truncation, similar to APSE protein P43; COG3617; antirepressor 1433047 7951180 HDEF_1580 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) antirepressor YP_002924343.1 1432676 D 340054 CDS YP_002924344.1 238898663 7951181 1433089..1433199 1 NC_012751.1 hypothetical protein 1433199 7951181 HDEF_1581 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924344.1 1433089 D 340054 CDS YP_002924345.1 238898664 7951182 1433199..1433462 1 NC_012751.1 C terminal truncation; phage integrase 1433462 7951182 HDEF_1582 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage integrase YP_002924345.1 1433199 D 340054 CDS YP_002924346.1 238898665 7951184 complement(1434449..1434766) 1 NC_012751.1 C terminal truncation; COG3561; phage anti-repressor protein 1434766 7951184 HDEF_1584 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage anti-repressor protein YP_002924346.1 1434449 R 340054 CDS YP_002924347.1 238898666 7951185 complement(1434884..1435654) 1 NC_012751.1 phage antirepressor 1435654 7951185 HDEF_1585 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage antirepressor YP_002924347.1 1434884 R 340054 CDS YP_002924348.1 238898667 7951186 complement(1435758..1435850) 1 NC_012751.1 hypothetical protein 1435850 7951186 HDEF_1586 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924348.1 1435758 R 340054 CDS YP_002924349.1 238898668 7951187 complement(1435932..1436723) 1 NC_012751.1 phage anti-repressor protein 1436723 7951187 HDEF_1587 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage anti-repressor protein YP_002924349.1 1435932 R 340054 CDS YP_002924350.1 238898669 7951188 complement(1436911..1437288) 1 NC_012751.1 hypothetical protein 1437288 7951188 HDEF_1588 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924350.1 1436911 R 340054 CDS YP_002924351.1 238898670 7951189 complement(1437531..1438046) 1 NC_012751.1 COG1525; SNase-like micrococcal nuclease 1438046 7951189 HDEF_1589 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) SNase-like micrococcal nuclease YP_002924351.1 1437531 R 340054 CDS YP_002924352.1 238898671 7951190 complement(1438074..1438208) 1 NC_012751.1 hypothetical protein 1438208 7951190 HDEF_1590 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924352.1 1438074 R 340054 CDS YP_002924353.1 238898672 7951191 complement(1438202..1438729) 1 NC_012751.1 phage-related exonuclease 1438729 7951191 HDEF_1591 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage-related exonuclease YP_002924353.1 1438202 R 340054 CDS YP_002924354.1 238898673 7951192 1439490..1442108 1 NC_012751.1 restriction endonuclease 1442108 7951192 HDEF_1592 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) restriction endonuclease YP_002924354.1 1439490 D 340054 CDS YP_002924355.1 238898674 7951195 complement(1443897..1445201) 1 NC_012751.1 COG0814; serine transport protein (HAAAP family) 1445201 sdaC 7951195 sdaC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine transport protein (HAAAP family) YP_002924355.1 1443897 R 340054 CDS YP_002924356.1 238898675 7951196 complement(1445505..1446152) 1 NC_012751.1 COG0177; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 1446152 nth 7951196 nth Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) YP_002924356.1 1445505 R 340054 CDS YP_002924357.1 238898676 7951197 complement(1446231..1446377) 1 NC_012751.1 hypothetical protein 1446377 7951197 HDEF_1597 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924357.1 1446231 R 340054 CDS YP_002924358.1 238898677 7951198 complement(1446374..1447330) 1 NC_012751.1 COG0340; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase; transcriptional repressor of biotin synthesis (BirA family) 1447330 birA 7951198 birA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase; transcriptional repressor of biotin synthesis (BirA family) YP_002924358.1 1446374 R 340054 CDS YP_002924359.1 238898678 7951199 complement(1447327..1448358) 1 NC_012751.1 COG0812; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding 1448358 murB 7951199 murB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding YP_002924359.1 1447327 R 340054 CDS YP_002924360.1 238898679 7951200 1448459..1449394 1 NC_012751.1 COG2890; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1449394 7951200 HDEF_1600 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_002924360.1 1448459 D 340054 CDS YP_002924361.1 238898680 7951201 complement(1449619..1450161) 1 NC_012751.1 hypothetical protein 1450161 7951201 HDEF_1601 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924361.1 1449619 R 340054 CDS YP_002924362.1 238898681 7951202 1450603..1450809 1 NC_012751.1 hypothetical protein 1450809 7951202 HDEF_1602 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924362.1 1450603 D 340054 CDS YP_002924363.1 238898682 7951203 1450806..1451471 1 NC_012751.1 hypothetical protein 1451471 7951203 HDEF_1603 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924363.1 1450806 D 340054 CDS YP_002924364.1 238898683 7951204 1451874..1452614 1 NC_012751.1 transcriptional regulator 1452614 7951204 HDEF_1604 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924364.1 1451874 D 340054 CDS YP_002924365.1 238898684 7951205 complement(1452636..1452788) 1 NC_012751.1 hypothetical protein 1452788 7951205 HDEF_1605 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924365.1 1452636 R 340054 CDS YP_002924366.1 238898685 7951206 1452915..1453205 1 NC_012751.1 COG1722; exonuclease VII small subunit 1453205 xseB 7951206 xseB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease VII small subunit YP_002924366.1 1452915 D 340054 CDS YP_002924367.1 238898686 7951207 1453210..1454148 1 NC_012751.1 COG0142; geranyltranstransferase (=farnesyldiphosphate synthase) 1454148 ispA 7951207 ispA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) geranyltranstransferase (=farnesyldiphosphate synthase) YP_002924367.1 1453210 D 340054 CDS YP_002924368.1 238898687 7951208 1454175..1456043 1 NC_012751.1 COG1154; 1-deoxy-D-xylulose-5-phosphate synthase 1456043 dxs 7951208 dxs Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 1-deoxy-D-xylulose-5-phosphate synthase YP_002924368.1 1454175 D 340054 CDS YP_002924369.1 238898688 7951209 complement(1456327..1458366) 1 NC_012751.1 hypothetical protein 1458366 7951209 HDEF_1609 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924369.1 1456327 R 340054 CDS YP_002924370.1 238898689 7951210 complement(1458760..1460262) 1 NC_012751.1 COG1008; NADH dehydrogenase I chain M, membrane subunit 1460262 nuoM 7951210 nuoM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain M, membrane subunit YP_002924370.1 1458760 R 340054 CDS YP_002924371.1 238898690 7951211 complement(1460304..1462205) 1 NC_012751.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1462205 nuoL 7951211 nuoL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase subunit L YP_002924371.1 1460304 R 340054 CDS YP_002924372.1 238898691 7951212 complement(1462202..1462504) 1 NC_012751.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1462504 nuoK 7951212 nuoK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase subunit K YP_002924372.1 1462202 R 340054 CDS YP_002924373.1 238898692 7951213 complement(1462648..1463214) 1 NC_012751.1 COG0839; NADH dehydrogenase I chain J 1463214 nuoJ 7951213 nuoJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase I chain J YP_002924373.1 1462648 R 340054 CDS YP_002924374.1 238898693 7951214 complement(1463337..1463879) 1 NC_012751.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1463879 nuoI 7951214 nuoI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase subunit I YP_002924374.1 1463337 R 340054 CDS YP_002924375.1 238898694 7951215 complement(1463954..1464931) 1 NC_012751.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1464931 nuoH 7951215 nuoH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase subunit H YP_002924375.1 1463954 R 340054 CDS YP_002924376.1 238898695 7951216 complement(1464928..1467660) 1 NC_012751.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1467660 nuoG 7951216 nuoG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NADH dehydrogenase subunit G YP_002924376.1 1464928 R 340054 CDS YP_002924377.1 238898696 7951217 complement(1467641..1467766) 1 NC_012751.1 hypothetical protein 1467766 7951217 HDEF_1617 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924377.1 1467641 R 340054 CDS YP_002924378.1 238898697 7951218 complement(1468006..1468731) 1 NC_012751.1 COG1126; glutamate-aspartate ABC transporter ATP-binding component 1468731 gltL 7951218 gltL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamate-aspartate ABC transporter ATP-binding component YP_002924378.1 1468006 R 340054 CDS YP_002924379.1 238898698 7951219 complement(1468797..1470812) 1 NC_012751.1 COG0556; excinulease of nucleotide excision repair, DNA damage recognition component 1470812 uvrB 7951219 uvrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) excinulease of nucleotide excision repair, DNA damage recognition component YP_002924379.1 1468797 R 340054 CDS YP_002924380.1 238898699 7951220 1471012..1471467 1 NC_012751.1 COG1734; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein 1471467 dksA 7951220 dksA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein YP_002924380.1 1471012 D 340054 CDS YP_002924381.1 238898700 7951221 1471674..1472993 1 NC_012751.1 COG0617; poly(A) polymerase I 1472993 pcnB 7951221 pcnB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) poly(A) polymerase I YP_002924381.1 1471674 D 340054 CDS YP_002924382.1 238898701 7951222 1473006..1473518 1 NC_012751.1 COG0801; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 1473518 folK 7951222 folK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase YP_002924382.1 1473006 D 340054 CDS YP_002924383.1 238898702 7951223 1473743..1474888 1 NC_012751.1 COG0845; multidrug efflux pump, membrane fusion (MFP/HlyD) family 1474888 7951223 HDEF_1623 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multidrug efflux pump, membrane fusion (MFP/HlyD) family YP_002924383.1 1473743 D 340054 CDS YP_002924384.1 238898703 7951224 1474952..1478092 1 NC_012751.1 COG0841; multidrug efflux pump 1478092 7951224 HDEF_1624 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) multidrug efflux pump YP_002924384.1 1474952 D 340054 CDS YP_002924385.1 238898704 7951225 1478579..1478800 1 NC_012751.1 hemolysin expression modulator 1478800 hha 7951225 hha Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hemolysin expression modulator YP_002924385.1 1478579 D 340054 CDS YP_002924386.1 238898705 7951226 1479408..1479893 1 NC_012751.1 COG0262; dihydrofolate reductase type I, trimethoprim resistance 1479893 folA 7951226 folA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydrofolate reductase type I, trimethoprim resistance YP_002924386.1 1479408 D 340054 CDS YP_002924387.1 238898706 7951227 complement(1479931..1480050) 1 NC_012751.1 hypothetical protein 1480050 7951227 HDEF_1627 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924387.1 1479931 R 340054 CDS YP_002924388.1 238898707 7951228 1480073..1482637 1 NC_012751.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1482637 mutS 7951228 mutS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA mismatch repair protein MutS YP_002924388.1 1480073 D 340054 CDS YP_002924389.1 238898708 7951229 1482677..1485301 1 NC_012751.1 hybrid sensory histidine kinase in two-component regulatory system with UvrY 1485301 barA 7951229 barA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hybrid sensory histidine kinase in two-component regulatory system with UvrY YP_002924389.1 1482677 D 340054 CDS YP_002924390.1 238898709 7951230 1485383..1485700 1 NC_012751.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 1485700 metJ 7951230 metJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional repressor protein MetJ YP_002924390.1 1485383 D 340054 CDS YP_002924391.1 238898710 7951231 complement(1485710..1486558) 1 NC_012751.1 COG0382; p-hydroxybenzoate octaprenyltransferase 1486558 ubiA 7951231 ubiA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) p-hydroxybenzoate octaprenyltransferase YP_002924391.1 1485710 R 340054 CDS YP_002924392.1 238898711 7951232 complement(1486551..1487078) 1 NC_012751.1 COG3161; chorismate pyruvate lyase 1487078 ubiC 7951232 ubiC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chorismate pyruvate lyase YP_002924392.1 1486551 R 340054 CDS YP_002924393.1 238898712 7951233 complement(1487159..1488118) 1 NC_012751.1 hypothetical protein 1488118 7951233 HDEF_1633 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924393.1 1487159 R 340054 CDS YP_002924394.1 238898713 7951234 complement(1488149..1489171) 1 NC_012751.1 COG0180; tryptophanyl-tRNA synthetase 1489171 trpS 7951234 trpS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tryptophanyl-tRNA synthetase YP_002924394.1 1488149 R 340054 CDS YP_002924395.1 238898714 7951235 complement(1489267..1489377) 1 NC_012751.1 hypothetical protein 1489377 7951235 HDEF_1636 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924395.1 1489267 R 340054 CDS YP_002924396.1 238898715 7951237 1489352..1490059 1 NC_012751.1 COG2771; autoinducer response regulator 1490059 smaR 7951237 smaR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) autoinducer response regulator YP_002924396.1 1489352 D 340054 CDS YP_002924397.1 238898716 7951236 complement(1490200..1490877) 1 NC_012751.1 COG0036; D-ribulose-5-phosphate 3-epimerase 1490877 rpe 7951236 rpe Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-ribulose-5-phosphate 3-epimerase YP_002924397.1 1490200 R 340054 CDS YP_002924398.1 238898717 7951238 complement(1490891..1491703) 1 NC_012751.1 COG0338; DNA adenine methylase 1491703 dam 7951238 dam Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA adenine methylase YP_002924398.1 1490891 R 340054 CDS YP_002924399.1 238898718 7951240 1491656..1491829 1 NC_012751.1 hypothetical protein 1491829 7951240 HDEF_1638 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924399.1 1491656 D 340054 CDS YP_002924400.1 238898719 7951239 complement(1491838..1492926) 1 NC_012751.1 COG0337; dehydroquinate synthase 1492926 aroB 7951239 aroB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dehydroquinate synthase YP_002924400.1 1491838 R 340054 CDS YP_002924401.1 238898720 7951241 complement(1492960..1493481) 1 NC_012751.1 COG0703; shikimate kinase I 1493481 aroK 7951241 aroK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) shikimate kinase I YP_002924401.1 1492960 R 340054 CDS YP_002924402.1 238898721 7951242 complement(1493584..1494417) 1 NC_012751.1 COG1718; serine/threonine protein kinase involved in cell cycle control 1494417 7951242 HDEF_1642 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine/threonine protein kinase involved in cell cycle control YP_002924402.1 1493584 R 340054 CDS YP_002924403.1 238898722 7951243 complement(1494526..1496655) 1 NC_012751.1 COG0280,COG0857; phosphate acetyltransferase 1496655 pta 7951243 pta Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphate acetyltransferase YP_002924403.1 1494526 R 340054 CDS YP_002924404.1 238898723 7951244 complement(1496726..1497949) 1 NC_012751.1 COG0282; acetate kinase A and propionate kinase 2 1497949 ackA 7951244 ackA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetate kinase A and propionate kinase 2 YP_002924404.1 1496726 R 340054 CDS YP_002924405.1 238898724 7951245 complement(1498160..1498378) 1 NC_012751.1 hypothetical protein 1498378 7951245 HDEF_1645 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924405.1 1498160 R 340054 CDS YP_002924406.1 238898725 7951247 complement(1498879..1500024) 1 NC_012751.1 COG0582; APSE-2 prophage; integrase 1500024 P38_1 7951247 P38_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; integrase YP_002924406.1 1498879 R 340054 CDS YP_002924407.1 238898726 7951248 complement(1499880..1500260) 1 NC_012751.1 APSE-2 prophage: excisionase 1500260 P40 7951248 P40 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage: excisionase YP_002924407.1 1499880 R 340054 CDS YP_002924408.1 238898727 7951249 complement(1500475..1501857) 1 NC_012751.1 COG0553; APSE-2 prophage; DEAD box helicase 1501857 P41 7951249 P41 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DEAD box helicase YP_002924408.1 1500475 R 340054 CDS YP_002924409.1 238898728 7951250 complement(1501877..1502623) 1 NC_012751.1 APSE-2 prophage; DNA binding protein Roi 1502623 P42 7951250 P42 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DNA binding protein Roi YP_002924409.1 1501877 R 340054 CDS YP_002924410.1 238898729 7951251 complement(1502689..1503462) 1 NC_012751.1 APSE-2 prophage; antirepressor 1503462 P43 7951251 P43 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; antirepressor YP_002924410.1 1502689 R 340054 CDS YP_002924411.1 238898730 7951252 complement(1503767..1504570) 1 NC_012751.1 APSE-2 prophage protein 1504570 G 7951252 G Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924411.1 1503767 R 340054 CDS YP_002924412.1 238898731 7951253 complement(1504982..1505266) 1 NC_012751.1 APSE-2 prophage protein 1505266 P44 7951253 P44 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924412.1 1504982 R 340054 CDS YP_002924413.1 238898732 7951254 complement(1505501..1508482) 1 NC_012751.1 APSE-2 prophage; DNA polymerase 1508482 P45 7951254 P45 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DNA polymerase YP_002924413.1 1505501 R 340054 CDS YP_002924414.1 238898733 7951255 complement(1508495..1508842) 1 NC_012751.1 APSE-2 prophage protein 1508842 I 7951255 I Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924414.1 1508495 R 340054 CDS YP_002924415.1 238898734 7951256 1508918..1509283 1 NC_012751.1 APSE-2 prophage; hypothetical 1509283 P47 7951256 P47 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; hypothetical YP_002924415.1 1508918 D 340054 CDS YP_002924417.1 238898735 7951258 complement(1509643..1510197) 1 NC_012751.1 APSE-2 prophage; hypothetical 1510197 P50 7951258 P50 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; hypothetical YP_002924417.1 1509643 R 340054 CDS YP_002924418.1 238898736 7951259 complement(1510213..1511532) 1 NC_012751.1 APSE-2 prophage; hypothetical 1511532 P51 7951259 P51 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; hypothetical YP_002924418.1 1510213 R 340054 CDS YP_002924419.1 238898737 7951260 complement(1511504..1512421) 1 NC_012751.1 APSE-2 prophage; hypothetical 1512421 P53 7951260 P53 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; hypothetical YP_002924419.1 1511504 R 340054 CDS YP_002924420.1 238898738 7951261 complement(1512986..1513768) 1 NC_012751.1 APSE-2 prophage; cI 1513768 P1 7951261 P1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; cI YP_002924420.1 1512986 R 340054 CDS YP_002924421.1 238898739 7951262 1513780..1514064 1 NC_012751.1 APSE-2 prophage: cro 1514064 P2 7951262 P2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage: cro YP_002924421.1 1513780 D 340054 CDS YP_002924422.1 238898740 7951263 1514068..1516305 1 NC_012751.1 P-loop ATPase 1516305 P3 7951263 P3 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) P-loop ATPase YP_002924422.1 1514068 D 340054 CDS YP_002924423.1 238898741 7951264 1516409..1516630 1 NC_012751.1 APSE-2 prophage protein 1516630 P4 7951264 P4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924423.1 1516409 D 340054 CDS YP_002924424.1 238898742 7951265 1516757..1517203 1 NC_012751.1 APSE-2 prophage; Q protein 1517203 P5 7951265 P5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; Q protein YP_002924424.1 1516757 D 340054 CDS YP_002924425.1 238898743 7951266 1517574..1517738 1 NC_012751.1 hypothetical protein 1517738 7951266 HDEF_1668 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924425.1 1517574 D 340054 CDS YP_002924426.1 238898744 7951267 1517900..1518304 1 NC_012751.1 APSE-2 prophage protein 1518304 A 7951267 A Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924426.1 1517900 D 340054 CDS YP_002924427.1 238898745 7951268 1518686..1519063 1 NC_012751.1 APSE-2 prophage protein 1519063 B 7951268 B Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924427.1 1518686 D 340054 CDS YP_002924428.1 238898746 7951269 1519315..1520304 1 NC_012751.1 APSE-2 prophage; cytolethal distending toxin subunit B 1520304 cdtB 7951269 cdtB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; cytolethal distending toxin subunit B YP_002924428.1 1519315 D 340054 CDS YP_002924429.1 238898747 7951270 1520562..1521326 1 NC_012751.1 APSE-2 prophage protein 1521326 D 7951270 D Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924429.1 1520562 D 340054 CDS YP_002924430.1 238898748 7951271 1521834..1522112 1 NC_012751.1 APSE-2 prophage; Lambda-like group I holin 1522112 P11 7951271 P11 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; Lambda-like group I holin YP_002924430.1 1521834 D 340054 CDS YP_002924431.1 238898749 7951272 1522309..1522536 1 NC_012751.1 APSE-2 prophage 1522536 E 7951272 E Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage YP_002924431.1 1522309 D 340054 CDS YP_002924432.1 238898750 7951273 1522499..1522963 1 NC_012751.1 COG3772; APSE-2 prophage; lysozyme 1522963 F 7951273 F Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; lysozyme YP_002924432.1 1522499 D 340054 CDS YP_002924433.1 238898751 7951274 1522968..1523354 1 NC_012751.1 APSE-2 prophage protein 1523354 P14 7951274 P14 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924433.1 1522968 D 340054 CDS YP_002924434.1 238898752 7951275 1523173..1523502 1 NC_012751.1 APSE-2 prophage protein 1523502 P16 7951275 P16 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924434.1 1523173 D 340054 CDS YP_002924435.1 238898753 7951276 1523576..1523992 1 NC_012751.1 APSE-2 prophage protein 1523992 P17 7951276 P17 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924435.1 1523576 D 340054 CDS YP_002924436.1 238898754 7951277 1524009..1525418 1 NC_012751.1 APSE-2 prophage; terminase 1525418 P18 7951277 P18 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; terminase YP_002924436.1 1524009 D 340054 CDS YP_002924437.1 238898755 7951278 1525418..1527580 1 NC_012751.1 APSE-2 prophage; portal protein 1527580 P19 7951278 P19 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; portal protein YP_002924437.1 1525418 D 340054 CDS YP_002924438.1 238898756 7951279 1527631..1528527 1 NC_012751.1 APSE-2 prophage; scaffold protein, gp8 1528527 P23 7951279 P23 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; scaffold protein, gp8 YP_002924438.1 1527631 D 340054 CDS YP_002924439.1 238898757 7951280 1528538..1529809 1 NC_012751.1 APSE-2 prophage; conserved APSE major head protein 1529809 P24 7951280 P24 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; conserved APSE major head protein YP_002924439.1 1528538 D 340054 CDS YP_002924440.1 238898758 7951281 1530029..1530511 1 NC_012751.1 APSE-2 prophage; DNA stabilization, gp4 1530511 P27 7951281 P27 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DNA stabilization, gp4 YP_002924440.1 1530029 D 340054 CDS YP_002924441.1 238898759 7951282 1530483..1531898 1 NC_012751.1 APSE-2 prophage; DNA stabilization, gp10 1531898 P28 7951282 P28 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DNA stabilization, gp10 YP_002924441.1 1530483 D 340054 CDS YP_002924442.1 238898760 7951283 1531898..1532428 1 NC_012751.1 APSE-2 prophage; DNA stabilization, gp26 1532428 P30 7951283 P30 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; DNA stabilization, gp26 YP_002924442.1 1531898 D 340054 CDS YP_002924443.1 238898761 7951284 1532428..1532895 1 NC_012751.1 APSE-2 prophage protein 1532895 P31 7951284 P31 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage protein YP_002924443.1 1532428 D 340054 CDS YP_002924444.1 238898762 7951285 1532873..1533502 1 NC_012751.1 APSE-2 prophage; transfer protein gp7 1533502 P32 7951285 P32 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; transfer protein gp7 YP_002924444.1 1532873 D 340054 CDS YP_002924445.1 238898763 7951286 1533515..1534903 1 NC_012751.1 APSE-2 prophage; transfer protein gp20 1534903 P33 7951286 P33 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; transfer protein gp20 YP_002924445.1 1533515 D 340054 CDS YP_002924446.1 238898764 7951287 1534903..1536780 1 NC_012751.1 APSE-2 prophage; transfer protein gp16 1536780 P35 7951287 P35 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; transfer protein gp16 YP_002924446.1 1534903 D 340054 CDS YP_002924447.1 238898765 7951288 1536809..1537837 1 NC_012751.1 APSE-2 prophage; tail spike proptein gp9 1537837 P36 7951288 P36 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; tail spike proptein gp9 YP_002924447.1 1536809 D 340054 CDS YP_002924448.1 238898766 7951289 1537839..1538291 1 NC_012751.1 COG5525; APSE-2 prophage; tail fiber asembly protein 1538291 P37 7951289 P37 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; tail fiber asembly protein YP_002924448.1 1537839 D 340054 CDS YP_002924449.1 238898767 7951290 complement(1538746..1539891) 1 NC_012751.1 COG0582; APSE-2 prophage; integrase 1539891 P38_2 7951290 P38_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) APSE-2 prophage; integrase YP_002924449.1 1538746 R 340054 CDS YP_002924450.1 238898768 7951291 complement(1540111..1540584) 1 NC_012751.1 N terminal truncation; COG0553; phage DNA helicase, partial 1540584 7951291 HDEF_1694 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage DNA helicase, partial YP_002924450.1 1540111 R 340054 CDS YP_002924451.1 238898769 7951293 1541856..1541999 1 NC_012751.1 hypothetical protein 1541999 7951293 HDEF_1696 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924451.1 1541856 D 340054 CDS YP_002924452.1 238898770 7951294 1541987..1542256 1 NC_012751.1 hypothetical protein 1542256 7951294 HDEF_1697 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924452.1 1541987 D 340054 CDS YP_002924453.1 238898771 7951295 1542365..1542511 1 NC_012751.1 hypothetical protein 1542511 7951295 HDEF_1698 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924453.1 1542365 D 340054 CDS YP_002924454.1 238898772 7951296 1542832..1543176 1 NC_012751.1 hypothetical protein 1543176 7951296 HDEF_1699 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924454.1 1542832 D 340054 CDS YP_002924455.1 238898773 7951297 1543367..1543852 1 NC_012751.1 phage endolysin 1543852 7951297 HDEF_1700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage endolysin YP_002924455.1 1543367 D 340054 CDS YP_002924456.1 238898774 7951298 1543831..1544256 1 NC_012751.1 hypothetical protein 1544256 7951298 HDEF_1701 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924456.1 1543831 D 340054 CDS YP_002924457.1 238898775 7951299 1544418..1544696 1 NC_012751.1 hypothetical protein 1544696 7951299 HDEF_1702 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924457.1 1544418 D 340054 CDS YP_002924458.1 238898776 7951300 1544693..1545226 1 NC_012751.1 hypothetical protein 1545226 7951300 HDEF_1703 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924458.1 1544693 D 340054 CDS YP_002924459.1 238898777 7951301 1545210..1546649 1 NC_012751.1 phage terminase-like protein 1546649 7951301 HDEF_1704 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage terminase-like protein YP_002924459.1 1545210 D 340054 CDS YP_002924460.1 238898778 7951303 complement(1547123..1547527) 1 NC_012751.1 ISHde1, transposase 1547527 7951303 HDEF_1706 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924460.1 1547123 R 340054 CDS YP_002924461.1 238898779 7951304 complement(1547568..1547945) 1 NC_012751.1 ISHde1, transposase 1547945 7951304 HDEF_1707 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924461.1 1547568 R 340054 CDS YP_002924462.1 238898780 7951307 1549401..1549664 1 NC_012751.1 C terminal truncation; phage integrase 1549664 7951307 HDEF_1710 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage integrase YP_002924462.1 1549401 D 340054 CDS YP_002924463.1 238898781 7951308 1549965..1553912 1 NC_012751.1 RTX-family protein-21 1553912 rtxA_21 7951308 rtxA_21 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-21 YP_002924463.1 1549965 D 340054 CDS YP_002924464.1 238898782 7951309 complement(1553846..1554853) 1 NC_012751.1 COG0568; RNA polymerase, sigma S (sigma 38) factor 1554853 rpoS 7951309 rpoS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase, sigma S (sigma 38) factor YP_002924464.1 1553846 R 340054 CDS YP_002924465.1 238898783 7951310 complement(1554908..1555873) 1 NC_012751.1 COG0739; lipoprotein 1555873 nlpD 7951310 nlpD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein YP_002924465.1 1554908 R 340054 CDS YP_002924466.1 238898784 7951311 complement(1555884..1556369) 1 NC_012751.1 COG0245; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1556369 ispF 7951311 ispF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002924466.1 1555884 R 340054 CDS YP_002924467.1 238898785 7951312 complement(1556378..1557103) 1 NC_012751.1 COG1211; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1557103 ispD 7951312 ispD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_002924467.1 1556378 R 340054 CDS YP_002924468.1 238898786 7951313 complement(1557106..1557420) 1 NC_012751.1 COG2919; cell division protein 1557420 ftsB 7951313 ftsB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein YP_002924468.1 1557106 R 340054 CDS YP_002924469.1 238898787 7951314 1557548..1557928 1 NC_012751.1 COG0720; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) 1557928 sscR 7951314 sscR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) YP_002924469.1 1557548 D 340054 CDS YP_002924470.1 238898788 7951315 complement(1557939..1558508) 1 NC_012751.1 COG0009; ribosome maturation factor 1558508 rimN 7951315 rimN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribosome maturation factor YP_002924470.1 1557939 R 340054 CDS YP_002924471.1 238898789 7951317 1559749..1560264 1 NC_012751.1 COG0242; peptide deformylase 1560264 def 7951317 def Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide deformylase YP_002924471.1 1559749 D 340054 CDS YP_002924472.1 238898790 7951318 1560338..1561297 1 NC_012751.1 COG0223; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase 1561297 fmt 7951318 fmt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase YP_002924472.1 1560338 D 340054 CDS YP_002924473.1 238898791 7951319 1561297..1562586 1 NC_012751.1 COG0144; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent 1562586 sun 7951319 sun Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent YP_002924473.1 1561297 D 340054 CDS YP_002924474.1 238898792 7951320 1562604..1563980 1 NC_012751.1 COG0569; potassium transport protein, NAD(P)-binding (Trk family) 1563980 trkA 7951320 trkA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) potassium transport protein, NAD(P)-binding (Trk family) YP_002924474.1 1562604 D 340054 CDS YP_002924475.1 238898793 7951321 1564045..1566351 1 NC_012751.1 COG2183; transcriptional accessory protein, RNA binding S1 domain protein 1566351 7951321 HDEF_1724 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional accessory protein, RNA binding S1 domain protein YP_002924475.1 1564045 D 340054 CDS YP_002924476.1 238898794 7951322 1566370..1567656 1 NC_012751.1 COG0001; glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent 1567656 hemL 7951322 hemL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent YP_002924476.1 1566370 D 340054 CDS YP_002924477.1 238898795 7951323 1567957..1569000 1 NC_012751.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1569000 mreB 7951323 mreB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) rod shape-determining protein MreB YP_002924477.1 1567957 D 340054 CDS YP_002924478.1 238898796 7951324 1569010..1569867 1 NC_012751.1 COG1792; rod shape-determining protein 1569867 mreC 7951324 mreC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) rod shape-determining protein YP_002924478.1 1569010 D 340054 CDS YP_002924479.1 238898797 7951325 1570002..1570490 1 NC_012751.1 part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 1570490 mreD 7951325 mreD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) rod shape-determining protein MreD YP_002924479.1 1570002 D 340054 CDS YP_002924480.1 238898798 7951326 1570524..1572011 1 NC_012751.1 COG1530; RNase G (ribonuclease G) 1572011 rng 7951326 rng Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase G (ribonuclease G) YP_002924480.1 1570524 D 340054 CDS YP_002924481.1 238898799 7951327 1572099..1573544 1 NC_012751.1 responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 1573544 tldD 7951327 tldD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protease TldD YP_002924481.1 1572099 D 340054 CDS YP_002924482.1 238898800 7951328 1573646..1574161 1 NC_012751.1 COG0586; integral membrane protein 1574161 yabI 7951328 yabI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integral membrane protein YP_002924482.1 1573646 D 340054 CDS YP_002924483.1 238898801 7951329 1574177..1574938 1 NC_012751.1 COG2226; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase; S-adenosylmethionine:2-DMK methyltransferase 1574938 ubiE 7951329 ubiE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase; S-adenosylmethionine:2-DMK methyltransferase YP_002924483.1 1574177 D 340054 CDS YP_002924484.1 238898802 7951330 1574991..1575599 1 NC_012751.1 COG3165; hypothetical protein 1575599 7951330 HDEF_1733 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924484.1 1574991 D 340054 CDS YP_002924485.1 238898803 7951331 1575596..1577227 1 NC_012751.1 COG0661; 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway 1577227 ubiB 7951331 ubiB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway YP_002924485.1 1575596 D 340054 CDS YP_002924486.1 238898804 7951332 1577251..1577505 1 NC_012751.1 COG1826; TatABCE protein translocation system subunit 1577505 tatA 7951332 tatA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TatABCE protein translocation system subunit YP_002924486.1 1577251 D 340054 CDS YP_002924487.1 238898805 7951334 1577763..1578482 1 NC_012751.1 COG0805; twin-arginine translocase subunit, sec-independent protein export 1578482 tatC 7951334 tatC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) twin-arginine translocase subunit, sec-independent protein export YP_002924487.1 1577763 D 340054 CDS YP_002924488.1 238898806 7951335 complement(1578490..1579440) 1 NC_012751.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 1579440 coaA 7951335 coaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pantothenate kinase YP_002924488.1 1578490 R 340054 CDS YP_002924489.1 238898807 7951336 1579736..1581100 1 NC_012751.1 transcriptional regulator of replication and housekeeping genes; COG0593; DNA replication initiator protein 1581100 dnaA 7951336 dnaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA replication initiator protein YP_002924489.1 1579736 D 340054 CDS YP_002924490.1 238898808 7951337 1581117..1582223 1 NC_012751.1 COG0592; DNA polymerase III, beta-subunit 1582223 dnaN 7951337 dnaN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, beta-subunit YP_002924490.1 1581117 D 340054 CDS YP_002924491.1 238898809 7951339 1583346..1585760 1 NC_012751.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1585760 gyrB 7951339 gyrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA gyrase subunit B YP_002924491.1 1583346 D 340054 CDS YP_002924492.1 238898810 7951340 complement(1585916..1586656) 1 NC_012751.1 COG0565; rRNA methylase, SpoU family 1586656 7951340 HDEF_1743 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) rRNA methylase, SpoU family YP_002924492.1 1585916 R 340054 CDS YP_002924493.1 238898811 7951341 1586811..1587602 1 NC_012751.1 COG0483; inositol monophosphatase 1587602 suhB 7951341 suhB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inositol monophosphatase YP_002924493.1 1586811 D 340054 CDS YP_002924494.1 238898812 7951342 complement(1587692..1589089) 1 NC_012751.1 COG0114; fumarase C (fumarate hydratase Class II) 1589089 fumC 7951342 fumC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fumarase C (fumarate hydratase Class II) YP_002924494.1 1587692 R 340054 CDS YP_002924495.1 238898813 7951343 complement(1589113..1590174) 1 NC_012751.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1590174 nadA 7951343 nadA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) quinolinate synthetase YP_002924495.1 1589113 R 340054 CDS YP_002924496.1 238898814 7951344 complement(1590424..1591203) 1 NC_012751.1 hypothetical protein 1591203 7951344 HDEF_1747 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924496.1 1590424 R 340054 CDS YP_002924497.1 238898815 7951345 1591750..1591854 1 NC_012751.1 hypothetical protein 1591854 7951345 HDEF_1748 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924497.1 1591750 D 340054 CDS YP_002924498.1 238898816 7951351 complement(1597351..1598016) 1 NC_012751.1 COG0576; Hsp 24 nucleotide exchange factor 1598016 grpE 7951351 grpE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Hsp 24 nucleotide exchange factor YP_002924498.1 1597351 R 340054 CDS YP_002924499.1 238898817 7951352 1598120..1599034 1 NC_012751.1 COG0061; NAD kinase 1599034 nadK 7951352 nadK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NAD kinase YP_002924499.1 1598120 D 340054 CDS YP_002924500.1 238898818 7951353 1599009..1599146 1 NC_012751.1 hypothetical protein 1599146 7951353 HDEF_1756 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924500.1 1599009 D 340054 CDS YP_002924501.1 238898819 7951354 complement(1599281..1599853) 1 NC_012751.1 COG2823; hypothetical protein 1599853 yfjB 7951354 yfjB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924501.1 1599281 R 340054 CDS YP_002924502.1 238898820 7951355 complement(1599850..1600455) 1 NC_012751.1 COG0279; DnaA initiator-associating factor for replication initiation 1600455 diaA 7951355 diaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DnaA initiator-associating factor for replication initiation YP_002924502.1 1599850 R 340054 CDS YP_002924503.1 238898821 7951356 complement(1600504..1600860) 1 NC_012751.1 COG0792; hypothetical protein 1600860 7951356 HDEF_1759 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924503.1 1600504 R 340054 CDS YP_002924504.1 238898822 7951357 complement(1601540..1601728) 1 NC_012751.1 hypothetical protein 1601728 7951357 HDEF_1761 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924504.1 1601540 R 340054 CDS YP_002924505.1 238898823 7951359 1601709..1602641 1 NC_012751.1 COG0142; octaprenyl diphosphate synthase 1602641 ispB 7951359 ispB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) octaprenyl diphosphate synthase YP_002924505.1 1601709 D 340054 CDS YP_002924506.1 238898824 7951358 complement(1602688..1603035) 1 NC_012751.1 phage Mu DNA-binding domain protein 1603035 7951358 HDEF_1762 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage Mu DNA-binding domain protein YP_002924506.1 1602688 R 340054 CDS YP_002924507.1 238898825 7951360 complement(1603060..1603170) 1 NC_012751.1 hypothetical protein 1603170 7951360 HDEF_1763 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924507.1 1603060 R 340054 CDS YP_002924508.1 238898826 7951361 1603399..1603593 1 NC_012751.1 COG3423; transcriptional activator of maltose metabolism 1603593 nlp 7951361 nlp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional activator of maltose metabolism YP_002924508.1 1603399 D 340054 CDS YP_002924509.1 238898827 7951362 complement(1603975..1604511) 1 NC_012751.1 COG4635; protoporphyrin flavoprotein oxidase, O2 dependent 1604511 hemG 7951362 hemG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protoporphyrin flavoprotein oxidase, O2 dependent YP_002924509.1 1603975 R 340054 CDS YP_002924510.1 238898828 7951363 complement(1604564..1605538) 1 NC_012751.1 COG0583; LysR family transcriptional regulator 1605538 cysB 7951363 cysB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) LysR family transcriptional regulator YP_002924510.1 1604564 R 340054 CDS YP_002924511.1 238898829 7951364 complement(1605629..1608250) 1 NC_012751.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1608250 topA 7951364 topA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA topoisomerase I YP_002924511.1 1605629 R 340054 CDS YP_002924512.1 238898830 7951365 complement(1608392..1609438) 1 NC_012751.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1609438 sohB 7951365 sohB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) periplasmic protease YP_002924512.1 1608392 R 340054 CDS YP_002924513.1 238898831 7951366 complement(1609618..1610670) 1 NC_012751.1 N terminal truncation; choline/ethanolamine kinase 1610670 7951366 HDEF_1769 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) choline/ethanolamine kinase YP_002924513.1 1609618 R 340054 CDS YP_002924514.1 238898832 7951367 1610696..1611424 1 NC_012751.1 COG4161; arginine transport protein (ABC superfamily, atp_bind) 1611424 artP 7951367 artP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine transport protein (ABC superfamily, atp_bind) YP_002924514.1 1610696 D 340054 CDS YP_002924515.1 238898833 7951368 1611529..1612278 1 NC_012751.1 COG0834; arginine transport protein (ABC superfamily, peri_bind) 1612278 artI 7951368 artI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine transport protein (ABC superfamily, peri_bind) YP_002924515.1 1611529 D 340054 CDS YP_002924516.1 238898834 7951369 1612287..1612997 1 NC_012751.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 1612997 artM 7951369 artM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine transporter permease subunit ArtQ YP_002924516.1 1612287 D 340054 CDS YP_002924517.1 238898835 7951370 1613003..1613671 1 NC_012751.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 1613671 artM 7951370 artM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) arginine transporter permease subunit ArtM YP_002924517.1 1613003 D 340054 CDS YP_002924518.1 238898836 7951371 1613774..1614727 1 NC_012751.1 hypothetical protein 1614727 7951371 HDEF_1774 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924518.1 1613774 D 340054 CDS YP_002924519.1 238898837 7951372 complement(1614805..1615575) 1 NC_012751.1 COG0842; transport protein (ABC superfamily, membrane) 1615575 yadH 7951372 yadH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein (ABC superfamily, membrane) YP_002924519.1 1614805 R 340054 CDS YP_002924520.1 238898838 7951373 complement(1615572..1616495) 1 NC_012751.1 COG1131; transport protein (ABC superfamily, atp_bind) 1616495 yadG 7951373 yadG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein (ABC superfamily, atp_bind) YP_002924520.1 1615572 R 340054 CDS YP_002924521.1 238898839 7951374 complement(1616842..1617762) 1 NC_012751.1 COG0774; UDP-3-O-acyl N-acetylglucosamine deacetylase 1617762 lpxC 7951374 lpxC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-3-O-acyl N-acetylglucosamine deacetylase YP_002924521.1 1616842 R 340054 CDS YP_002924522.1 238898840 7951375 complement(1618032..1619186) 1 NC_012751.1 COG0206; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division 1619186 ftsZ 7951375 ftsZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division YP_002924522.1 1618032 R 340054 CDS YP_002924523.1 238898841 7951376 complement(1619338..1620597) 1 NC_012751.1 COG0849; cell division protein 1620597 ftsA 7951376 ftsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein YP_002924523.1 1619338 R 340054 CDS YP_002924524.1 238898842 7951377 complement(1620625..1621440) 1 NC_012751.1 COG1589; cell division protein; ingrowth of wall at septum 1621440 ftsQ 7951377 ftsQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein; ingrowth of wall at septum YP_002924524.1 1620625 R 340054 CDS YP_002924525.1 238898843 7951378 complement(1621442..1622404) 1 NC_012751.1 COG1181; D-alanine-D-alanine ligase B, affects cell division 1622404 ddlB 7951378 ddlB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-alanine-D-alanine ligase B, affects cell division YP_002924525.1 1621442 R 340054 CDS YP_002924526.1 238898844 7951379 complement(1622397..1623878) 1 NC_012751.1 COG0773; UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme 1623878 murC 7951379 murC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme YP_002924526.1 1622397 R 340054 CDS YP_002924527.1 238898845 7951380 complement(1623887..1624966) 1 NC_012751.1 COG0707; UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1624966 murG 7951380 murG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_002924527.1 1623887 R 340054 CDS YP_002924528.1 238898846 7951381 complement(1624963..1626135) 1 NC_012751.1 integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW 1626135 ftsW 7951381 ftsW Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein FtsW YP_002924528.1 1624963 R 340054 CDS YP_002924529.1 238898847 7951382 complement(1626132..1627469) 1 NC_012751.1 COG0771; UDP-N-acetylmuramoylalanine-D-glutamate ligase 1627469 murD 7951382 murD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_002924529.1 1626132 R 340054 CDS YP_002924530.1 238898848 7951383 complement(1627469..1628551) 1 NC_012751.1 COG0472; phospho-N-acetylmuramoyl-pentapeptide transferase 1628551 mraY 7951383 mraY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phospho-N-acetylmuramoyl-pentapeptide transferase YP_002924530.1 1627469 R 340054 CDS YP_002924531.1 238898849 7951384 complement(1628545..1629906) 1 NC_012751.1 COG0770; D-alanine:D-alanine-adding enzyme 1629906 murF 7951384 murF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-alanine:D-alanine-adding enzyme YP_002924531.1 1628545 R 340054 CDS YP_002924532.1 238898850 7951385 complement(1629908..1631416) 1 NC_012751.1 COG0769; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase 1631416 murE 7951385 murE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase YP_002924532.1 1629908 R 340054 CDS YP_002924533.1 238898851 7951386 complement(1631403..1633154) 1 NC_012751.1 COG0768; division-specific transpeptidase, penicillin-binding protein 3 1633154 ftsI 7951386 ftsI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) division-specific transpeptidase, penicillin-binding protein 3 YP_002924533.1 1631403 R 340054 CDS YP_002924534.1 238898852 7951387 complement(1633164..1633529) 1 NC_012751.1 membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL 1633529 ftsL 7951387 ftsL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein FtsL YP_002924534.1 1633164 R 340054 CDS YP_002924535.1 238898853 7951388 complement(1633529..1634464) 1 NC_012751.1 COG0275; S-adenosyl-dependent methyl transferase 1634464 mraW 7951388 mraW Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) S-adenosyl-dependent methyl transferase YP_002924535.1 1633529 R 340054 CDS YP_002924536.1 238898854 7951389 complement(1634491..1634949) 1 NC_012751.1 COG2001; cell division protein 1634949 mraZ 7951389 mraZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein YP_002924536.1 1634491 R 340054 CDS YP_002924537.1 238898855 7951390 complement(1635215..1636171) 1 NC_012751.1 activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator 1636171 leuO 7951390 leuO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) leucine transcriptional activator YP_002924537.1 1635215 R 340054 CDS YP_002924538.1 238898856 7951391 complement(1636360..1636455) 1 NC_012751.1 hypothetical protein 1636455 7951391 HDEF_1794 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924538.1 1636360 R 340054 CDS YP_002924539.1 238898857 7951392 1636765..1636869 1 NC_012751.1 hypothetical protein 1636869 7951392 HDEF_1795 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924539.1 1636765 D 340054 CDS YP_002924540.1 238898858 7951393 1636787..1636909 1 NC_012751.1 hypothetical protein 1636909 7951393 HDEF_1796 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924540.1 1636787 D 340054 CDS YP_002924541.1 238898859 7951394 complement(1637054..1637926) 1 NC_012751.1 hypothetical protein 1637926 7951394 HDEF_1797 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924541.1 1637054 R 340054 CDS YP_002924542.1 238898860 7951395 complement(1637945..1638799) 1 NC_012751.1 hypothetical protein 1638799 7951395 HDEF_1798 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924542.1 1637945 R 340054 CDS YP_002924543.1 238898861 7951396 complement(1638879..1641269) 1 NC_012751.1 intimin-like protein 1641269 7951396 HDEF_1799 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) intimin-like protein YP_002924543.1 1638879 R 340054 CDS YP_002924544.1 238898862 7951397 1641954..1642271 1 NC_012751.1 N terminal truncation; COG2198; sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system 1642271 yojN 7951397 yojN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system YP_002924544.1 1641954 D 340054 CDS YP_002924545.1 238898863 7951398 join(1642258..1642569,1644915..1645247) 1 NC_012751.1 regulates capsule biosynthesis, cell division genes, OsmC expression, repressor of flhDC operon (LuxR/UhpA familiy); two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB 1645247 rcsB 7951398 rcsB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator RcsB YP_002924545.1 1642258 D 340054 CDS YP_002924546.1 238898864 7951399 1645525..1646229 1 NC_012751.1 regulates genes involved in folding/degrading periplasmic proteins (OmpR family; COG0745; response regulator in two-component regulatory system with CpxA 1646229 cpxR 7951399 cpxR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) response regulator in two-component regulatory system with CpxA YP_002924546.1 1645525 D 340054 CDS YP_002924547.1 238898865 7951400 1646298..1646810 1 NC_012751.1 COG0219; tRNA/rRNA methyltransferase 1646810 yibK 7951400 yibK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA/rRNA methyltransferase YP_002924547.1 1646298 D 340054 CDS YP_002924548.1 238898866 7951401 complement(1646737..1647486) 1 NC_012751.1 COG2949; vancomycin sensitivity, oxidoreductase 1647486 sanA 7951401 sanA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) vancomycin sensitivity, oxidoreductase YP_002924548.1 1646737 R 340054 CDS YP_002924549.1 238898867 7951402 complement(1647660..1649348) 1 NC_012751.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1649348 sfcA 7951402 sfcA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) malate dehydrogenase YP_002924549.1 1647660 R 340054 CDS YP_002924550.1 238898868 7951403 complement(1649375..1651012) 1 NC_012751.1 COG0143; methionine tRNA synthetase 1651012 metG 7951403 metG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methionine tRNA synthetase YP_002924550.1 1649375 R 340054 CDS YP_002924551.1 238898869 7951404 1651177..1652286 1 NC_012751.1 COG0489; ATPase 1652286 7951404 HDEF_1808 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATPase YP_002924551.1 1651177 D 340054 CDS YP_002924552.1 238898870 7951405 complement(1652459..1653535) 1 NC_012751.1 hypothetical protein 1653535 7951405 HDEF_1809 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924552.1 1652459 R 340054 CDS YP_002924553.1 238898871 7951406 1653772..1655061 1 NC_012751.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1655061 kdtA 7951406 kdtA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-deoxy-D-manno-octulosonic-acid transferase YP_002924553.1 1653772 D 340054 CDS YP_002924554.1 238898872 7951407 1655058..1655843 1 NC_012751.1 COG0463; glycosyltransferase group 2 1655843 7951407 HDEF_1811 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyltransferase group 2 YP_002924554.1 1655058 D 340054 CDS YP_002924555.1 238898873 7951408 1655853..1656323 1 NC_012751.1 COG0669; CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) 1656323 coaD 7951408 coaD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) YP_002924555.1 1655853 D 340054 CDS YP_002924556.1 238898874 7951409 1656817..1657230 1 NC_012751.1 hypothetical protein 1657230 7951409 HDEF_1813 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924556.1 1656817 D 340054 CDS YP_002924557.1 238898875 7951410 1657621..1658637 1 NC_012751.1 hypothetical protein 1658637 7951410 HDEF_1814 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924557.1 1657621 D 340054 CDS YP_002924558.1 238898876 7951411 1659066..1661897 1 NC_012751.1 COG0178; DNA excision repair enzyme subunit, with UvrBC 1661897 uvrA 7951411 uvrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA excision repair enzyme subunit, with UvrBC YP_002924558.1 1659066 D 340054 CDS YP_002924559.1 238898877 7951412 complement(1661967..1663109) 1 NC_012751.1 COG1485; ATPase 1663109 yhcM 7951412 yhcM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATPase YP_002924559.1 1661967 R 340054 CDS YP_002924560.1 238898878 7951413 1663196..1663588 1 NC_012751.1 COG3105; cytochrome d ubiquinol oxidase subunit III 1663588 yhcB 7951413 yhcB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome d ubiquinol oxidase subunit III YP_002924560.1 1663196 D 340054 CDS YP_002924561.1 238898879 7951414 1663653..1664696 1 NC_012751.1 COG0265; serine endoprotease 1664696 degS 7951414 degS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) serine endoprotease YP_002924561.1 1663653 D 340054 CDS YP_002924562.1 238898880 7951415 complement(1664766..1666004) 1 NC_012751.1 COG0814; tryptophan-specific transport protein (HAAAP family) 1666004 mtr 7951415 mtr Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tryptophan-specific transport protein (HAAAP family) YP_002924562.1 1664766 R 340054 CDS YP_002924563.1 238898881 7951416 1666234..1667367 1 NC_012751.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1667367 fruB 7951416 fruB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein YP_002924563.1 1666234 D 340054 CDS YP_002924564.1 238898882 7951417 1667364..1668299 1 NC_012751.1 COG1105; fructose-1-phosphate kinase 1668299 fruK 7951417 fruK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fructose-1-phosphate kinase YP_002924564.1 1667364 D 340054 CDS YP_002924565.1 238898883 7951418 1668311..1669993 1 NC_012751.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC 1669993 fruA 7951418 fruA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS system fructose-specific transporter subunits IIBC YP_002924565.1 1668311 D 340054 CDS YP_002924566.1 238898884 7951419 1670073..1671335 1 NC_012751.1 COG0436; aspartate aminotransferase, PLP-dependent - 2 1671335 aspC_2 7951419 aspC_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aspartate aminotransferase, PLP-dependent - 2 YP_002924566.1 1670073 D 340054 CDS YP_002924567.1 238898885 7951420 1671459..1673375 1 NC_012751.1 COG0441; threonine tRNA synthetase 1673375 thrS 7951420 thrS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) threonine tRNA synthetase YP_002924567.1 1671459 D 340054 CDS YP_002924568.1 238898886 7951421 1673392..1673946 1 NC_012751.1 COG0290; protein chain initiation factor IF-3 1673946 infC 7951421 infC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) protein chain initiation factor IF-3 YP_002924568.1 1673392 D 340054 CDS YP_002924569.1 238898887 7951422 1674044..1674241 1 NC_012751.1 COG0291; 50S ribosomal subunit protein L35 1674241 rpmI 7951422 rpmI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L35 YP_002924569.1 1674044 D 340054 CDS YP_002924570.1 238898888 7951423 1674281..1674637 1 NC_012751.1 COG0292; 50S ribosomal subunit protein L20, also posttranslational autoregulator 1674637 rplT 7951423 rplT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L20, also posttranslational autoregulator YP_002924570.1 1674281 D 340054 CDS YP_002924571.1 238898889 7951424 complement(1674698..1674847) 1 NC_012751.1 hypothetical protein 1674847 7951424 HDEF_1829 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924571.1 1674698 R 340054 CDS YP_002924572.1 238898890 7951426 1674778..1675761 1 NC_012751.1 COG0016; phenylalanine tRNA synthetase, alpha-subunit 1675761 pheS 7951426 pheS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phenylalanine tRNA synthetase, alpha-subunit YP_002924572.1 1674778 D 340054 CDS YP_002924573.1 238898891 7951425 1675776..1678175 1 NC_012751.1 COG0072; phenylalanine tRNA synthetase, beta-subunit 1678175 pheT 7951425 pheT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phenylalanine tRNA synthetase, beta-subunit YP_002924573.1 1675776 D 340054 CDS YP_002924574.1 238898892 7951427 1678181..1678504 1 NC_012751.1 COG0776; integration host factor (IHF), DNA-binding protein, alpha subunit 1678504 ihfA 7951427 ihfA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) integration host factor (IHF), DNA-binding protein, alpha subunit YP_002924574.1 1678181 D 340054 CDS YP_002924575.1 238898893 7951428 1678516..1679844 1 NC_012751.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1679844 mukF 7951428 mukF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) condesin subunit F YP_002924575.1 1678516 D 340054 CDS YP_002924576.1 238898894 7951429 1679852..1680559 1 NC_012751.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1680559 mukE 7951429 mukE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) condesin subunit E YP_002924576.1 1679852 D 340054 CDS YP_002924577.1 238898895 7951430 1680556..1684971 1 NC_012751.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1684971 mukB 7951430 mukB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein MukB YP_002924577.1 1680556 D 340054 CDS YP_002924578.1 238898896 7951431 1685035..1686627 1 NC_012751.1 COG2989; hypothetical protein 1686627 7951431 HDEF_1835 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924578.1 1685035 D 340054 CDS YP_002924579.1 238898897 7951432 complement(1686636..1688684) 1 NC_012751.1 COG0339; oligopeptidase A 1688684 prlC 7951432 prlC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) oligopeptidase A YP_002924579.1 1686636 R 340054 CDS YP_002924580.1 238898898 7951433 complement(1688743..1689456) 1 NC_012751.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1689456 purC 7951433 purC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002924580.1 1688743 R 340054 CDS YP_002924581.1 238898899 7951434 complement(1689498..1690556) 1 NC_012751.1 COG3317; lipoprotein 1690556 nlpB 7951434 nlpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoprotein YP_002924581.1 1689498 R 340054 CDS YP_002924582.1 238898900 7951435 complement(1690594..1691493) 1 NC_012751.1 COG0329; dihydrodipicolinate synthase 1691493 dapA 7951435 dapA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydrodipicolinate synthase YP_002924582.1 1690594 R 340054 CDS YP_002924583.1 238898901 7951436 complement(1691634..1692029) 1 NC_012751.1 COG0203; 50S ribosomal subunit protein L17 1692029 rplQ 7951436 rplQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L17 YP_002924583.1 1691634 R 340054 CDS YP_002924584.1 238898902 7951437 complement(1692068..1693060) 1 NC_012751.1 COG0202; RNA polymerase, alpha subunit 1693060 rpoA 7951437 rpoA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase, alpha subunit YP_002924584.1 1692068 R 340054 CDS YP_002924585.1 238898903 7951438 complement(1693086..1693706) 1 NC_012751.1 COG0522; 30S ribosomal protein S4 1693706 rpsD 7951438 rpsD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S4 YP_002924585.1 1693086 R 340054 CDS YP_002924586.1 238898904 7951439 complement(1693737..1694126) 1 NC_012751.1 COG0100; 30S ribosomal protein S11 1694126 rpsK 7951439 rpsK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S11 YP_002924586.1 1693737 R 340054 CDS YP_002924587.1 238898905 7951440 complement(1694142..1694498) 1 NC_012751.1 COG0099; 30S ribosomal protein S13 1694498 rpsM 7951440 rpsM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S13 YP_002924587.1 1694142 R 340054 CDS YP_002924588.1 238898906 7951441 complement(1694634..1694750) 1 NC_012751.1 COG0257; 50S ribosomal subunit protein L36 1694750 rpmJ 7951441 rpmJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L36 YP_002924588.1 1694634 R 340054 CDS YP_002924589.1 238898907 7951442 complement(1694784..1696109) 1 NC_012751.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1696109 secY 7951442 secY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase subunit SecY YP_002924589.1 1694784 R 340054 CDS YP_002924590.1 238898908 7951443 complement(1696117..1696551) 1 NC_012751.1 COG0200; 50S ribosomal protein L15 1696551 rplO 7951443 rplO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L15 YP_002924590.1 1696117 R 340054 CDS YP_002924591.1 238898909 7951444 complement(1696542..1696745) 1 NC_012751.1 COG1841; 50S ribosomal subunit protein L30 1696745 rpmD 7951444 rpmD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L30 YP_002924591.1 1696542 R 340054 CDS YP_002924592.1 238898910 7951445 complement(1696750..1697259) 1 NC_012751.1 COG0098; 30S ribosomal protein S5 1697259 rpsE 7951445 rpsE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S5 YP_002924592.1 1696750 R 340054 CDS YP_002924593.1 238898911 7951446 complement(1697279..1697632) 1 NC_012751.1 COG0256; 50S ribosomal protein L18 1697632 rplR 7951446 rplR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L18 YP_002924593.1 1697279 R 340054 CDS YP_002924594.1 238898912 7951447 complement(1697642..1698175) 1 NC_012751.1 COG0097; 50S ribosomal protein L6 1698175 rplF 7951447 rplF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L6 YP_002924594.1 1697642 R 340054 CDS YP_002924595.1 238898913 7951448 complement(1698189..1698584) 1 NC_012751.1 COG0096; 30S ribosomal protein S8 1698584 rpsH 7951448 rpsH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S8 YP_002924595.1 1698189 R 340054 CDS YP_002924596.1 238898914 7951449 complement(1698619..1698924) 1 NC_012751.1 COG0199; 30S ribosomal subunit protein S14 1698924 rpsN 7951449 rpsN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S14 YP_002924596.1 1698619 R 340054 CDS YP_002924597.1 238898915 7951450 complement(1698940..1699479) 1 NC_012751.1 COG0094; 50S ribosomal protein L5 1699479 rplE 7951450 rplE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L5 YP_002924597.1 1698940 R 340054 CDS YP_002924598.1 238898916 7951451 complement(1699501..1699830) 1 NC_012751.1 COG0198; 50S ribosomal subunit protein L24 1699830 rplX 7951451 rplX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L24 YP_002924598.1 1699501 R 340054 CDS YP_002924599.1 238898917 7951452 complement(1699841..1700212) 1 NC_012751.1 COG0093; 50S ribosomal protein L14 1700212 rplN 7951452 rplN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L14 YP_002924599.1 1699841 R 340054 CDS YP_002924600.1 238898918 7951453 complement(1700371..1700625) 1 NC_012751.1 COG0186; 30S ribosomal protein S17 1700625 rpsQ 7951453 rpsQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S17 YP_002924600.1 1700371 R 340054 CDS YP_002924601.1 238898919 7951454 complement(1700622..1700816) 1 NC_012751.1 COG0255; 50S ribosomal subunit protein L29 1700816 rpmC 7951454 rpmC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L29 YP_002924601.1 1700622 R 340054 CDS YP_002924602.1 238898920 7951455 complement(1700858..1701268) 1 NC_012751.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1701268 rplP 7951455 rplP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L16 YP_002924602.1 1700858 R 340054 CDS YP_002924603.1 238898921 7951456 complement(1701268..1701969) 1 NC_012751.1 COG0092; 30S ribosomal protein S3 1701969 rpsC 7951456 rpsC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal protein S3 YP_002924603.1 1701268 R 340054 CDS YP_002924604.1 238898922 7951457 complement(1701969..1702319) 1 NC_012751.1 COG0091; 50S ribosomal protein L22 1702319 rplV 7951457 rplV Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L22 YP_002924604.1 1701969 R 340054 CDS YP_002924605.1 238898923 7951458 complement(1702333..1702617) 1 NC_012751.1 COG0185; 30S ribosomal subunit protein S19 1702617 rpsS 7951458 rpsS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S19 YP_002924605.1 1702333 R 340054 CDS YP_002924606.1 238898924 7951459 complement(1702634..1703458) 1 NC_012751.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1703458 rplB 7951459 rplB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L2 YP_002924606.1 1702634 R 340054 CDS YP_002924607.1 238898925 7951460 complement(1703475..1703777) 1 NC_012751.1 COG0089; 50S ribosomal subunit protein L23 1703777 rplW 7951460 rplW Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L23 YP_002924607.1 1703475 R 340054 CDS YP_002924608.1 238898926 7951461 complement(1703774..1704379) 1 NC_012751.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1704379 rplD 7951461 rplD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L4 YP_002924608.1 1703774 R 340054 CDS YP_002924609.1 238898927 7951462 complement(1704396..1705028) 1 NC_012751.1 COG0087; 50S ribosomal protein L3 1705028 rplC 7951462 rplC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L3 YP_002924609.1 1704396 R 340054 CDS YP_002924610.1 238898928 7951463 complement(1705061..1705381) 1 NC_012751.1 COG0051; 30S ribosomal subunit protein S10 1705381 rpsJ 7951463 rpsJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S10 YP_002924610.1 1705061 R 340054 CDS YP_002924611.1 238898929 7951465 complement(1706397..1707461) 1 NC_012751.1 COG0609; citrate-dependent iron (III) transport protein (ABC superfamily, membrane) 1707461 fecD 7951465 fecD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) citrate-dependent iron (III) transport protein (ABC superfamily, membrane) YP_002924611.1 1706397 R 340054 CDS YP_002924612.1 238898930 7951467 complement(1707664..1708569) 1 NC_012751.1 C terminal truncation; transporter major facilitator superfamily 1708569 7951467 HDEF_1871 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transporter major facilitator superfamily YP_002924612.1 1707664 R 340054 CDS YP_002924613.1 238898931 7951468 complement(1708700..1709746) 1 NC_012751.1 NAD/NADP octopine/nopaline dehydrogenase 1709746 7951468 HDEF_1872 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) NAD/NADP octopine/nopaline dehydrogenase YP_002924613.1 1708700 R 340054 CDS YP_002924614.1 238898932 7951469 complement(1709743..1710438) 1 NC_012751.1 subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme 1710438 cysK 7951469 cysK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme YP_002924614.1 1709743 R 340054 CDS YP_002924615.1 238898933 7951470 complement(1710407..1711216) 1 NC_012751.1 C terminal truncation; lysine/ornithine decarboxylase 1711216 7951470 HDEF_1874 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lysine/ornithine decarboxylase YP_002924615.1 1710407 R 340054 CDS YP_002924616.1 238898934 7951472 1713182..1713397 1 NC_012751.1 COG1918; ferrous iron transport protein A 1713397 feoA 7951472 feoA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ferrous iron transport protein A YP_002924616.1 1713182 D 340054 CDS YP_002924617.1 238898935 7951473 1713415..1715703 1 NC_012751.1 cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 1715703 feoB 7951473 feoB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ferrous iron transport protein B YP_002924617.1 1713415 D 340054 CDS YP_002924618.1 238898936 7951474 1715700..1715948 1 NC_012751.1 hypothetical protein 1715948 7951474 HDEF_1878 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924618.1 1715700 D 340054 CDS YP_002924619.1 238898937 7951476 complement(1716261..1716449) 1 NC_012751.1 hypothetical protein 1716449 7951476 HDEF_1880 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924619.1 1716261 R 340054 CDS YP_002924620.1 238898938 7951477 complement(1716500..1716949) 1 NC_012751.1 hypothetical protein 1716949 7951477 HDEF_1881 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924620.1 1716500 R 340054 CDS YP_002924621.1 238898939 7951478 complement(1717046..1718329) 1 NC_012751.1 COG0372; citrate synthase 1718329 gltA 7951478 gltA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) citrate synthase YP_002924621.1 1717046 R 340054 CDS YP_002924622.1 238898940 7951479 1718710..1719090 1 NC_012751.1 COG2009; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD 1719090 sdhC 7951479 sdhC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD YP_002924622.1 1718710 D 340054 CDS YP_002924623.1 238898941 7951480 1719084..1719431 1 NC_012751.1 COG2142; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC 1719431 sdhD 7951480 sdhD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC YP_002924623.1 1719084 D 340054 CDS YP_002924624.1 238898942 7951481 1719432..1721198 1 NC_012751.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1721198 sdhA 7951481 sdhA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinate dehydrogenase flavoprotein subunit YP_002924624.1 1719432 D 340054 CDS YP_002924625.1 238898943 7951482 1721264..1721980 1 NC_012751.1 COG0479; succinate dehydrogenase, Fe-S protein 1721980 sdhB 7951482 sdhB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinate dehydrogenase, Fe-S protein YP_002924625.1 1721264 D 340054 CDS YP_002924626.1 238898944 7951483 1722017..1724824 1 NC_012751.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1724824 sucA 7951483 sucA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 2-oxoglutarate dehydrogenase E1 component YP_002924626.1 1722017 D 340054 CDS YP_002924627.1 238898945 7951484 1724866..1726152 1 NC_012751.1 COG0508; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex 1726152 sucB 7951484 sucB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex YP_002924627.1 1724866 D 340054 CDS YP_002924628.1 238898946 7951485 1726270..1727436 1 NC_012751.1 COG0045; succinyl-CoA synthetase, beta subunit 1727436 sucC 7951485 sucC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinyl-CoA synthetase, beta subunit YP_002924628.1 1726270 D 340054 CDS YP_002924629.1 238898947 7951486 1727436..1728308 1 NC_012751.1 COG0074; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding 1728308 sucD 7951486 sucD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) succinyl-CoA synthetase, alpha subunit, NAD(P)-binding YP_002924629.1 1727436 D 340054 CDS YP_002924630.1 238898948 7951487 1728699..1729097 1 NC_012751.1 hypothetical protein 1729097 7951487 HDEF_1891 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924630.1 1728699 D 340054 CDS YP_002924631.1 238898949 7951488 1729154..1731634 1 NC_012751.1 peptidase/autotransporter 1731634 7951488 HDEF_1892 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidase/autotransporter YP_002924631.1 1729154 D 340054 CDS YP_002924632.1 238898950 7951490 complement(1732254..1733237) 1 NC_012751.1 COG0205; 6-phosphofructokinase I 1733237 pfkA 7951490 pfkA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 6-phosphofructokinase I YP_002924632.1 1732254 R 340054 CDS YP_002924633.1 238898951 7951491 complement(1733324..1733890) 1 NC_012751.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1733890 efp 7951491 efp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) elongation factor P YP_002924633.1 1733324 R 340054 CDS YP_002924634.1 238898952 7951492 1733928..1734965 1 NC_012751.1 COG1509; aminomutase 1734965 yjeK 7951492 yjeK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminomutase YP_002924634.1 1733928 D 340054 CDS YP_002924635.1 238898953 7951493 complement(1735018..1735869) 1 NC_012751.1 COG0190; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase 1735869 folD 7951493 folD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002924635.1 1735018 R 340054 CDS YP_002924636.1 238898954 7951494 complement(1735911..1737206) 1 NC_012751.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1737206 thrC 7951494 thrC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) threonine synthase YP_002924636.1 1735911 R 340054 CDS YP_002924637.1 238898955 7951495 complement(1737214..1738143) 1 NC_012751.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1738143 thrB 7951495 thrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) homoserine kinase YP_002924637.1 1737214 R 340054 CDS YP_002924638.1 238898956 7951496 complement(1738147..1740609) 1 NC_012751.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1740609 thrA 7951496 thrA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional aspartokinase I/homoserine dehydrogenase I YP_002924638.1 1738147 R 340054 CDS YP_002924639.1 238898957 7951497 1741171..1741923 1 NC_012751.1 COG0745; two-component response regulator 1741923 arcA 7951497 arcA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) two-component response regulator YP_002924639.1 1741171 D 340054 CDS YP_002924640.1 238898958 7951498 1742022..1742399 1 NC_012751.1 ISHde1, transposase 1742399 7951498 HDEF_1902 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924640.1 1742022 D 340054 CDS YP_002924641.1 238898959 7951499 1742440..1742844 1 NC_012751.1 ISHde1, transposase 1742844 7951499 HDEF_1903 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924641.1 1742440 D 340054 CDS YP_002924642.1 238898960 7951500 1742868..1743551 1 NC_012751.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1743551 mutH_1 7951500 mutH_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA mismatch repair protein YP_002924642.1 1742868 D 340054 CDS YP_002924643.1 238898961 7951502 1743872..1744519 1 NC_012751.1 hypothetical protein 1744519 7951502 HDEF_1906 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924643.1 1743872 D 340054 CDS YP_002924644.1 238898962 7951503 1744704..1746284 1 NC_012751.1 hypothetical protein 1746284 7951503 HDEF_1907 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924644.1 1744704 D 340054 CDS YP_002924645.1 238898963 7951504 complement(1746598..1747521) 1 NC_012751.1 COG5006; threonine and homoserine efflux protein (DMT family) 1747521 rhtA 7951504 rhtA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) threonine and homoserine efflux protein (DMT family) YP_002924645.1 1746598 R 340054 CDS YP_002924646.1 238898964 7951505 complement(1747527..1748900) 1 NC_012751.1 COG1249; lipoamide dehydrogenase, E3 component is part of three enzyme complexes 1748900 lpd_1 7951505 lpd_1 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) lipoamide dehydrogenase, E3 component is part of three enzyme complexes YP_002924646.1 1747527 R 340054 CDS YP_002924647.1 238898965 7951506 complement(1749117..1749857) 1 NC_012751.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1749857 hda 7951506 hda Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA replication initiation factor YP_002924647.1 1749117 R 340054 CDS YP_002924648.1 238898966 7951507 complement(1750086..1750226) 1 NC_012751.1 hypothetical protein 1750226 7951507 HDEF_1911 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924648.1 1750086 R 340054 CDS YP_002924649.1 238898967 7951508 complement(1750775..1751017) 1 NC_012751.1 hypothetical protein 1751017 7951508 HDEF_1912 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924649.1 1750775 R 340054 CDS YP_002924650.1 238898968 7951509 1751453..1752121 1 NC_012751.1 COG2003; DNA repair protein 1752121 radC 7951509 radC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA repair protein YP_002924650.1 1751453 D 340054 CDS YP_002924651.1 238898969 7951510 1752268..1752504 1 NC_012751.1 COG0227; 50S ribosomal subunit protein L28 1752504 rpmB 7951510 rpmB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L28 YP_002924651.1 1752268 D 340054 CDS YP_002924652.1 238898970 7951511 1752516..1752683 1 NC_012751.1 COG0267; 50S ribosomal subunit protein L33 1752683 rpmG 7951511 rpmG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L33 YP_002924652.1 1752516 D 340054 CDS YP_002924653.1 238898971 7951512 1752936..1753787 1 NC_012751.1 COG0682; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase 1753787 lgt 7951512 lgt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylglycerol-prolipoprotein diacylglyceryl transferase YP_002924653.1 1752936 D 340054 CDS YP_002924654.1 238898972 7951513 1753817..1754611 1 NC_012751.1 COG0207; thymidylate synthetase 1754611 thyA 7951513 thyA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thymidylate synthetase YP_002924654.1 1753817 D 340054 CDS YP_002924655.1 238898973 7951514 1754614..1754958 1 NC_012751.1 COG2920; tRNA 2-thiouridine synthesizing sulfurtransferase E 1754958 tusE 7951514 tusE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA 2-thiouridine synthesizing sulfurtransferase E YP_002924655.1 1754614 D 340054 CDS YP_002924656.1 238898974 7951516 complement(1755084..1756556) 1 NC_012751.1 COG2925; exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase 1756556 sbcB 7951516 sbcB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase YP_002924656.1 1755084 R 340054 CDS YP_002924657.1 238898975 7951517 complement(1756640..1757770) 1 NC_012751.1 COG0635; coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent 1757770 hemN 7951517 hemN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent YP_002924657.1 1756640 R 340054 CDS YP_002924658.1 238898976 7951518 complement(1757763..1758365) 1 NC_012751.1 COG0127; dITP/dXTP pyrophosphatase 1758365 rdgB 7951518 rdgB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dITP/dXTP pyrophosphatase YP_002924658.1 1757763 R 340054 CDS YP_002924659.1 238898977 7951519 complement(1758391..1758945) 1 NC_012751.1 COG0762; hypothetical protein 1758945 7951519 HDEF_1924 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924659.1 1758391 R 340054 CDS YP_002924660.1 238898978 7951521 1758911..1759042 1 NC_012751.1 hypothetical protein 1759042 7951521 HDEF_1923 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924660.1 1758911 D 340054 CDS YP_002924661.1 238898979 7951520 1759200..1760642 1 NC_012751.1 COG0516; IMP dehydrogenase 1760642 guaB 7951520 guaB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) IMP dehydrogenase YP_002924661.1 1759200 D 340054 CDS YP_002924662.1 238898980 7951522 1760786..1762363 1 NC_012751.1 COG0519; GMP synthetase (glutamine aminotransferase) 1762363 guaA 7951522 guaA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GMP synthetase (glutamine aminotransferase) YP_002924662.1 1760786 D 340054 CDS YP_002924663.1 238898981 7951523 complement(1762502..1762984) 1 NC_012751.1 COG1267; phosphatidylglycerophosphatase A 1762984 pgpA 7951523 pgpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphatidylglycerophosphatase A YP_002924663.1 1762502 R 340054 CDS YP_002924664.1 238898982 7951524 complement(1762987..1763994) 1 NC_012751.1 COG0611; thiamin-monophosphate kinase 1763994 thiL 7951524 thiL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) thiamin-monophosphate kinase YP_002924664.1 1762987 R 340054 CDS YP_002924665.1 238898983 7951525 complement(1764042..1764497) 1 NC_012751.1 COG0781; transcription termination; L factor 1764497 nusB 7951525 nusB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcription termination; L factor YP_002924665.1 1764042 R 340054 CDS YP_002924666.1 238898984 7951526 complement(1764509..1765006) 1 NC_012751.1 COG0054; riboflavin synthase, alpha chain 1765006 ribE 7951526 ribE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) riboflavin synthase, alpha chain YP_002924666.1 1764509 R 340054 CDS YP_002924667.1 238898985 7951527 1765157..1765288 1 NC_012751.1 hypothetical protein 1765288 7951527 HDEF_1931 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924667.1 1765157 D 340054 CDS YP_002924668.1 238898986 7951528 complement(1765285..1765704) 1 NC_012751.1 hypothetical protein 1765704 7951528 HDEF_1932 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924668.1 1765285 R 340054 CDS YP_002924669.1 238898987 7951529 complement(1765691..1766521) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_1936; RTX-family protein-23 1766521 rtxA_23 7951529 rtxA_23 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-23 YP_002924669.1 1765691 R 340054 CDS YP_002924670.1 238898988 7951530 1766642..1767019 1 NC_012751.1 ISHde1, transposase 1767019 7951530 HDEF_1934 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924670.1 1766642 D 340054 CDS YP_002924671.1 238898989 7951531 1767060..1767464 1 NC_012751.1 ISHde1, transposase 1767464 7951531 HDEF_1935 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924671.1 1767060 D 340054 CDS YP_002924672.1 238898990 7951532 complement(1767480..1771538) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_1933; RTX-family protein-22 1771538 rtxA_22 7951532 rtxA_22 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-22 YP_002924672.1 1767480 R 340054 CDS YP_002924673.1 238898991 7951963 1772186..1773898 1 NC_012751.1 reverse transcriptase 1773898 7951963 HDEF_1937 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924673.1 1772186 D 340054 CDS YP_002924674.1 238898992 7951534 complement(1773950..1774060) 1 NC_012751.1 hypothetical protein 1774060 7951534 HDEF_1938 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924674.1 1773950 R 340054 CDS YP_002924675.1 238898993 7951535 complement(1774128..1775129) 1 NC_012751.1 COG2255; Holliday junction helicase, subunit B 1775129 ruvB 7951535 ruvB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Holliday junction helicase, subunit B YP_002924675.1 1774128 R 340054 CDS YP_002924676.1 238898994 7951536 complement(1775163..1775777) 1 NC_012751.1 COG0632; Holliday junction helicase, subunit A 1775777 ruvA 7951536 ruvA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Holliday junction helicase, subunit A YP_002924676.1 1775163 R 340054 CDS YP_002924677.1 238898995 7951537 complement(1775813..1776733) 1 NC_012751.1 COG0540; aspartate carbamoyltransferase, catalytic subunit 1776733 pyrB 7951537 pyrB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aspartate carbamoyltransferase, catalytic subunit YP_002924677.1 1775813 R 340054 CDS YP_002924678.1 238898996 7951538 complement(1776800..1777654) 1 NC_012751.1 COG1660; hypothetical protein 1777654 7951538 HDEF_1942 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924678.1 1776800 R 340054 CDS YP_002924679.1 238898997 7951539 complement(1777752..1778222) 1 NC_012751.1 COG1762; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 1778222 ptsN 7951539 ptsN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002924679.1 1777752 R 340054 CDS YP_002924680.1 238898998 7951540 complement(1778303..1779028) 1 NC_012751.1 COG1137; transport protein (ABC superfamily, atp_bind) 1779028 yhbG 7951540 yhbG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein (ABC superfamily, atp_bind) YP_002924680.1 1778303 R 340054 CDS YP_002924681.1 238898999 7951541 complement(1779028..1779573) 1 NC_012751.1 COG1934; hypothetical protein 1779573 7951541 HDEF_1945 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924681.1 1779028 R 340054 CDS YP_002924682.1 238899000 7951542 complement(1779548..1780165) 1 NC_012751.1 COG3117; hypothetical protein 1780165 7951542 HDEF_1946 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924682.1 1779548 R 340054 CDS YP_002924683.1 238899001 7951543 complement(1780179..1780736) 1 NC_012751.1 COG1778; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1780736 kdsC 7951543 kdsC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002924683.1 1780179 R 340054 CDS YP_002924684.1 238899002 7951544 complement(1780752..1781729) 1 NC_012751.1 COG0794; D-arabinose 5-phosphate isomerase 1781729 kdsD 7951544 kdsD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-arabinose 5-phosphate isomerase YP_002924684.1 1780752 R 340054 CDS YP_002924685.1 238899003 7951546 1782130..1782888 1 NC_012751.1 COG1127; organic solvent ABC transporter ATP-binding protein 1782888 yrbF 7951546 yrbF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) organic solvent ABC transporter ATP-binding protein YP_002924685.1 1782130 D 340054 CDS YP_002924686.1 238899004 7951547 1782916..1783701 1 NC_012751.1 COG0767; ABC transporter permease 1783701 yrbE 7951547 yrbE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter permease YP_002924686.1 1782916 D 340054 CDS YP_002924687.1 238899005 7951548 1783704..1784213 1 NC_012751.1 COG1463; organic solvent ABC transporter cytoplasmic membrane protein 1784213 yrbD 7951548 yrbD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) organic solvent ABC transporter cytoplasmic membrane protein YP_002924687.1 1783704 D 340054 CDS YP_002924688.1 238899006 7951549 1784229..1784852 1 NC_012751.1 resistance to organic solvents, auxiliary component; COG2854; ABC transporter 1784852 7951549 HDEF_1953 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ABC transporter YP_002924688.1 1784229 D 340054 CDS YP_002924689.1 238899007 7951550 1784865..1785113 1 NC_012751.1 COG5007; hypothetical protein 1785113 bolA_2 7951550 bolA_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924689.1 1784865 D 340054 CDS YP_002924690.1 238899008 7951551 1785148..1786416 1 NC_012751.1 COG0766; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1786416 murA 7951551 murA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002924690.1 1785148 D 340054 CDS YP_002924691.1 238899009 7951552 1786489..1787148 1 NC_012751.1 COG0288; carbonic anhydrase 1787148 can 7951552 can Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) carbonic anhydrase YP_002924691.1 1786489 D 340054 CDS YP_002924692.1 238899010 7951553 complement(1787585..1790179) 1 NC_012751.1 C terminal truncation; inner membrane protein 1790179 7951553 HDEF_1957 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inner membrane protein YP_002924692.1 1787585 R 340054 CDS YP_002924693.1 238899011 7951554 1790353..1791075 1 NC_012751.1 hypothetical protein 1791075 7951554 HDEF_1958 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924693.1 1790353 D 340054 CDS YP_002924694.1 238899012 7951556 1792198..1793526 1 NC_012751.1 COG1538; type I transport system, outer membrane efflux protein 1793526 siiC 7951556 siiC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type I transport system, outer membrane efflux protein YP_002924694.1 1792198 D 340054 CDS YP_002924695.1 238899013 7951557 1793531..1794805 1 NC_012751.1 COG0845; type I transport system, membrane permease HylD family 1794805 siiD 7951557 siiD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type I transport system, membrane permease HylD family YP_002924695.1 1793531 D 340054 CDS YP_002924696.1 238899014 7951558 complement(1794890..1796233) 1 NC_012751.1 COG1109; phosphoglucosamine mutase 1796233 glmM 7951558 glmM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoglucosamine mutase YP_002924696.1 1794890 R 340054 CDS YP_002924697.1 238899015 7951559 complement(1796240..1797082) 1 NC_012751.1 COG0294; 7,8-dihydropteroate synthase 1797082 folP 7951559 folP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7,8-dihydropteroate synthase YP_002924697.1 1796240 R 340054 CDS YP_002924698.1 238899016 7951560 complement(1797319..1799244) 1 NC_012751.1 COG0465; ATP-dependent zinc-metallo protease 1799244 hflB 7951560 hflB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent zinc-metallo protease YP_002924698.1 1797319 R 340054 CDS YP_002924699.1 238899017 7951561 complement(1799304..1799930) 1 NC_012751.1 COG0293; 23S rRNA methyltransferase 1799930 rrmJ 7951561 rrmJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 23S rRNA methyltransferase YP_002924699.1 1799304 R 340054 CDS YP_002924700.1 238899018 7951562 complement(1800082..1800558) 1 NC_012751.1 COG0782; transcription elongation factor, cleaves 3' nucleotide of paused mRNA 1800558 greA 7951562 greA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcription elongation factor, cleaves 3' nucleotide of paused mRNA YP_002924700.1 1800082 R 340054 CDS YP_002924701.1 238899019 7951563 1800974..1801804 1 NC_012751.1 COG1076; co-chaperone of DnaK (DnaJ-like), implicated in regulation of colanic acid capsule 1801804 djlA 7951563 djlA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) co-chaperone of DnaK (DnaJ-like), implicated in regulation of colanic acid capsule YP_002924701.1 1800974 D 340054 CDS YP_002924702.1 238899020 7951564 complement(1801820..1802311) 1 NC_012751.1 COG1666; hypothetical protein 1802311 7951564 HDEF_1968 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924702.1 1801820 R 340054 CDS YP_002924703.1 238899021 7951565 complement(1802644..1804050) 1 NC_012751.1 adenylate cyclase-2 1804050 exoY_2 7951565 exoY_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenylate cyclase-2 YP_002924703.1 1802644 R 340054 CDS YP_002924704.1 238899022 7951566 complement(1804480..1805175) 1 NC_012751.1 hypothetical protein 1805175 7951566 HDEF_1970 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924704.1 1804480 R 340054 CDS YP_002924705.1 238899023 7951567 complement(1805231..1805929) 1 NC_012751.1 hypothetical protein 1805929 7951567 HDEF_1971 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924705.1 1805231 R 340054 CDS YP_002924706.1 238899024 7951568 complement(1806212..1806577) 1 NC_012751.1 hypothetical protein 1806577 7951568 HDEF_1972 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924706.1 1806212 R 340054 CDS YP_002924707.1 238899025 7951570 complement(1807621..1808079) 1 NC_012751.1 phage transcriptional regulatory protein 1808079 cro_2 7951570 cro_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage transcriptional regulatory protein YP_002924707.1 1807621 R 340054 CDS YP_002924708.1 238899026 7951571 1808191..1808778 1 NC_012751.1 phage repressor protein 1808778 7951571 HDEF_1975 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage repressor protein YP_002924708.1 1808191 D 340054 CDS YP_002924709.1 238899027 7951572 1809335..1809427 1 NC_012751.1 hypothetical protein 1809427 7951572 HDEF_1976 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924709.1 1809335 D 340054 CDS YP_002924710.1 238899028 7951573 complement(1809533..1809928) 1 NC_012751.1 similar to APSE protein P47; hypothetical protein 1809928 7951573 HDEF_1977 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924710.1 1809533 R 340054 CDS YP_002924711.1 238899029 7951574 1810164..1810343 1 NC_012751.1 hypothetical protein 1810343 7951574 HDEF_1978 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924711.1 1810164 D 340054 CDS YP_002924712.1 238899030 7951575 1810325..1811008 1 NC_012751.1 hypothetical protein 1811008 7951575 HDEF_1979 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924712.1 1810325 D 340054 CDS YP_002924713.1 238899031 7951576 1811005..1811565 1 NC_012751.1 hypothetical protein 1811565 7951576 HDEF_1980 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924713.1 1811005 D 340054 CDS YP_002924714.1 238899032 7951577 1811583..1812089 1 NC_012751.1 phage-related exonuclease 1812089 7951577 HDEF_1981 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage-related exonuclease YP_002924714.1 1811583 D 340054 CDS YP_002924715.1 238899033 7951579 1812272..1812637 1 NC_012751.1 ISHde2, transposase 1812637 7951579 HDEF_1983 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924715.1 1812272 D 340054 CDS YP_002924716.1 238899034 7951580 1812778..1813059 1 NC_012751.1 ISHde2, transposase 1813059 7951580 HDEF_1984 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924716.1 1812778 D 340054 CDS YP_002924717.1 238899035 7951581 1813259..1813858 1 NC_012751.1 glyoxalase 1813858 7951581 HDEF_1985 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glyoxalase YP_002924717.1 1813259 D 340054 CDS YP_002924718.1 238899036 7951582 complement(1814087..1814248) 1 NC_012751.1 hypothetical protein 1814248 7951582 HDEF_1986 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924718.1 1814087 R 340054 CDS YP_002924719.1 238899037 7951583 complement(1814166..1814402) 1 NC_012751.1 hypothetical protein 1814402 7951583 HDEF_1987 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924719.1 1814166 R 340054 CDS YP_002924720.1 238899038 7951586 1815306..1816016 1 NC_012751.1 transcriptional regulator 1816016 7951586 HDEF_1990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924720.1 1815306 D 340054 CDS YP_002924721.1 238899039 7951587 complement(1816042..1816251) 1 NC_012751.1 COG2155; hypothetical protein 1816251 7951587 HDEF_1991 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924721.1 1816042 R 340054 CDS YP_002924722.1 238899040 7951588 1816688..1817470 1 NC_012751.1 COG1052; fermentative D-lactate dehydrogenase, NAD-dependent 1817470 ldhA 7951588 ldhA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fermentative D-lactate dehydrogenase, NAD-dependent YP_002924722.1 1816688 D 340054 CDS YP_002924723.1 238899041 7951589 1817638..1817733 1 NC_012751.1 hypothetical protein 1817733 7951589 HDEF_1993 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924723.1 1817638 D 340054 CDS YP_002924724.1 238899042 7951590 complement(1817800..1818474) 1 NC_012751.1 COG1028; C factor cell-cell signaling protein 1818474 7951590 HDEF_1994 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) C factor cell-cell signaling protein YP_002924724.1 1817800 R 340054 CDS YP_002924725.1 238899043 7951592 1819054..1821045 1 NC_012751.1 COG0843; cytochrome o ubiquinol oxidase, subunit I -2 1821045 cyoB_2 7951592 cyoB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome o ubiquinol oxidase, subunit I -2 YP_002924725.1 1819054 D 340054 CDS YP_002924726.1 238899044 7951593 1821435..1821869 1 NC_012751.1 hypothetical protein 1821869 7951593 HDEF_1997 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924726.1 1821435 D 340054 CDS YP_002924727.1 238899045 7951594 1822029..1822547 1 NC_012751.1 N terminal truncation; IS4-like transposase 1822547 7951594 HDEF_1998 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) IS4-like transposase YP_002924727.1 1822029 D 340054 CDS YP_002924728.1 238899046 7951595 complement(1822889..1823188) 1 NC_012751.1 hypothetical protein 1823188 7951595 HDEF_1999 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924728.1 1822889 R 340054 CDS YP_002924729.1 238899047 7951964 1824076..1825260 1 NC_012751.1 N terminus, interrupted by GII intron; reverse transcriptase 1825260 7951964 HDEF_2000 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924729.1 1824076 D 340054 CDS YP_002924730.1 238899048 7951965 complement(1825337..1827019) 1 NC_012751.1 reverse transcriptase 1827019 7951965 HDEF_2001 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924730.1 1825337 R 340054 CDS YP_002924731.1 238899049 7951966 1827639..1828103 1 NC_012751.1 C terminus, interrupted by GII intron; reverse transcriptase 1828103 7951966 HDEF_2002 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924731.1 1827639 D 340054 CDS YP_002924732.1 238899050 7951602 1829128..1829943 1 NC_012751.1 N terminal truncation; hypothetical protein 1829943 7951602 HDEF_2004 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924732.1 1829128 D 340054 CDS YP_002924733.1 238899051 7951601 1830015..1830407 1 NC_012751.1 N and C terminal truncations; phage DNA-directed DNA polymerase 1830407 7951601 HDEF_2006 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage DNA-directed DNA polymerase YP_002924733.1 1830015 D 340054 CDS YP_002924734.1 238899052 7951603 complement(1830359..1830709) 1 NC_012751.1 N terminal truncation; phage integrase 1830709 7951603 HDEF_2007 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage integrase YP_002924734.1 1830359 R 340054 CDS YP_002924735.1 238899053 7951604 complement(1830699..1832075) 1 NC_012751.1 COG0486; GTPase involved in tRNA modification and in thiophene and furan oxidation 1832075 mnmE 7951604 mnmE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) GTPase involved in tRNA modification and in thiophene and furan oxidation YP_002924735.1 1830699 R 340054 CDS YP_002924736.1 238899054 7951605 complement(1832189..1833832) 1 NC_012751.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1833832 yidC 7951605 yidC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inner membrane protein translocase component YidC YP_002924736.1 1832189 R 340054 CDS YP_002924737.1 238899055 7951606 complement(1833835..1834059) 1 NC_012751.1 COG0759; hypothetical protein 1834059 7951606 HDEF_2010 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924737.1 1833835 R 340054 CDS YP_002924738.1 238899056 7951607 complement(1834083..1834430) 1 NC_012751.1 COG0594; RNase P, protein C5 component, processes tRNA, 4.5S RNA 1834430 rnpA 7951607 rnpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNase P, protein C5 component, processes tRNA, 4.5S RNA YP_002924738.1 1834083 R 340054 CDS YP_002924739.1 238899057 7951608 complement(1834445..1834585) 1 NC_012751.1 COG0230; 50S ribosomal subunit protein L34 1834585 rpmH 7951608 rpmH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L34 YP_002924739.1 1834445 R 340054 CDS YP_002924740.1 238899058 7951609 complement(1834542..1834643) 1 NC_012751.1 hypothetical protein 1834643 7951609 HDEF_2013 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924740.1 1834542 R 340054 CDS YP_002924741.1 238899059 7951610 1835014..1836540 1 NC_012751.1 hypothetical protein 1836540 7951610 HDEF_2014 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924741.1 1835014 D 340054 CDS YP_002924742.1 238899060 7951611 1836573..1841192 1 NC_012751.1 hypothetical protein 1841192 7951611 HDEF_2015 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924742.1 1836573 D 340054 CDS YP_002924743.1 238899061 7951612 1841179..1841625 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_2017; RTX-family protein-24 1841625 rtxA_24 7951612 rtxA_24 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-24 YP_002924743.1 1841179 D 340054 CDS YP_002924744.1 238899062 7951613 1841695..1843023 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_2016; RTX-family protein-25 1843023 rtxA_25 7951613 rtxA_25 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-25 YP_002924744.1 1841695 D 340054 CDS YP_002924745.1 238899063 7951614 complement(1843105..1844136) 1 NC_012751.1 COG0042; tRNA-dihydrouridine synthase A 1844136 dusA 7951614 dusA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA-dihydrouridine synthase A YP_002924745.1 1843105 R 340054 CDS YP_002924746.1 238899064 7951616 complement(1845201..1845329) 1 NC_012751.1 hypothetical protein 1845329 7951616 HDEF_2020 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924746.1 1845201 R 340054 CDS YP_002924747.1 238899065 7951617 1845644..1846204 1 NC_012751.1 hypothetical protein 1846204 7951617 HDEF_2021 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924747.1 1845644 D 340054 CDS YP_002924748.1 238899066 7951967 complement(1846252..1846746) 1 NC_012751.1 C terminus, interrupted by GII intron; reverse transcriptase 1846746 7951967 HDEF_2022 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924748.1 1846252 R 340054 CDS YP_002924749.1 238899067 7951968 1847366..1849048 1 NC_012751.1 reverse transcriptase 1849048 7951968 HDEF_2023 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924749.1 1847366 D 340054 CDS YP_002924750.1 238899068 7951620 complement(1849125..1850309) 1 NC_012751.1 N terminus, interrupted by GII intron; reverse transcriptase 1850309 7951620 HDEF_2024 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002924750.1 1849125 R 340054 CDS YP_002924751.1 238899069 7951969 1851396..1852580 1 NC_012751.1 hypothetical protein 1852580 7951969 HDEF_2025 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924751.1 1851396 D 340054 CDS YP_002924752.1 238899070 7951622 complement(1852626..1853699) 1 NC_012751.1 COG0472; UDP-GlcNAc:UDPphosphate GlcNAc-1-phosphate transferase 1853699 rfe 7951622 rfe Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) UDP-GlcNAc:UDPphosphate GlcNAc-1-phosphate transferase YP_002924752.1 1852626 R 340054 CDS YP_002924753.1 238899071 7951623 complement(1853776..1855035) 1 NC_012751.1 COG1158; transcription termination factor Rho; polarity suppressor 1855035 rho 7951623 rho Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcription termination factor Rho; polarity suppressor YP_002924753.1 1853776 R 340054 CDS YP_002924754.1 238899072 7951624 1855464..1855571 1 NC_012751.1 hypothetical protein 1855571 7951624 HDEF_2028 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924754.1 1855464 D 340054 CDS YP_002924755.1 238899073 7951631 1861750..1863351 1 NC_012751.1 COG0138; bifunctional IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) 1863351 purH 7951631 purH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) YP_002924755.1 1861750 D 340054 CDS YP_002924756.1 238899074 7951632 1863433..1864728 1 NC_012751.1 COG0151; phosphoribosylglycinamide synthetase (GAR synthetase) 1864728 purD 7951632 purD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoribosylglycinamide synthetase (GAR synthetase) YP_002924756.1 1863433 D 340054 CDS YP_002924757.1 238899075 7951633 1864804..1866255 1 NC_012751.1 COG0168; potassium transporter 1866255 trkH 7951633 trkH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) potassium transporter YP_002924757.1 1864804 D 340054 CDS YP_002924758.1 238899076 7951634 1866346..1868955 1 NC_012751.1 COG0495; leucine tRNA synthetase 1868955 leuS 7951634 leuS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) leucine tRNA synthetase YP_002924758.1 1866346 D 340054 CDS YP_002924759.1 238899077 7951635 1868948..1869535 1 NC_012751.1 COG2980; minor lipoprotein 1869535 rlpB 7951635 rlpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) minor lipoprotein YP_002924759.1 1868948 D 340054 CDS YP_002924760.1 238899078 7951636 1869532..1870590 1 NC_012751.1 COG1466; DNA polymerase III, delta subunit, probably ATP hydrolase 1870590 holA 7951636 holA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, delta subunit, probably ATP hydrolase YP_002924760.1 1869532 D 340054 CDS YP_002924761.1 238899079 7951637 1870580..1871263 1 NC_012751.1 COG1057; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-requiring 1871263 nadD 7951637 nadD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) nicotinic acid mononucleotide adenylyltransferase, NAD(P)-requiring YP_002924761.1 1870580 D 340054 CDS YP_002924762.1 238899080 7951638 complement(1871451..1872884) 1 NC_012751.1 sensitivity to phages, colicins; E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1872884 lpd_2 7951638 lpd_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) dihydrolipoamide dehydrogenase YP_002924762.1 1871451 R 340054 CDS YP_002924763.1 238899081 7951639 complement(1872901..1874496) 1 NC_012751.1 COG0508; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit 1874496 aceF 7951639 aceF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit YP_002924763.1 1872901 R 340054 CDS YP_002924764.1 238899082 7951640 complement(1874523..1877189) 1 NC_012751.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1877189 aceE 7951640 aceE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyruvate dehydrogenase subunit E1 YP_002924764.1 1874523 R 340054 CDS YP_002924765.1 238899083 7951642 complement(1878313..1878411) 1 NC_012751.1 hypothetical protein 1878411 7951642 HDEF_2046 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924765.1 1878313 R 340054 CDS YP_002924766.1 238899084 7951645 complement(1879901..1880305) 1 NC_012751.1 ISHde1, transposase 1880305 7951645 HDEF_2049 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924766.1 1879901 R 340054 CDS YP_002924767.1 238899085 7951646 complement(1880346..1880723) 1 NC_012751.1 ISHde1, transposase 1880723 7951646 HDEF_2050 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924767.1 1880346 R 340054 CDS YP_002924768.1 238899086 7951648 complement(1882023..1882340) 1 NC_012751.1 C terminal truncation; COG3561; phage anti-repressor protein 1882340 7951648 HDEF_2052 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage anti-repressor protein YP_002924768.1 1882023 R 340054 CDS YP_002924769.1 238899087 7951649 complement(1882458..1883228) 1 NC_012751.1 phage antirepressor 1883228 7951649 HDEF_2053 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage antirepressor YP_002924769.1 1882458 R 340054 CDS YP_002924770.1 238899088 7951650 complement(1883332..1883424) 1 NC_012751.1 hypothetical protein 1883424 7951650 HDEF_2054 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924770.1 1883332 R 340054 CDS YP_002924771.1 238899089 7951651 complement(1883506..1884297) 1 NC_012751.1 phage anti-repressor protein 1884297 7951651 HDEF_2055 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage anti-repressor protein YP_002924771.1 1883506 R 340054 CDS YP_002924772.1 238899090 7951652 complement(1884485..1884862) 1 NC_012751.1 hypothetical protein 1884862 7951652 HDEF_2056 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924772.1 1884485 R 340054 CDS YP_002924773.1 238899091 7951653 complement(1885105..1885620) 1 NC_012751.1 COG1525; SNase-like micrococcal nuclease 1885620 7951653 HDEF_2057 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) SNase-like micrococcal nuclease YP_002924773.1 1885105 R 340054 CDS YP_002924774.1 238899092 7951654 1886140..1886661 1 NC_012751.1 hypothetical protein 1886661 7951654 HDEF_2058 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924774.1 1886140 D 340054 CDS YP_002924775.1 238899093 7951656 complement(1887205..1887828) 1 NC_012751.1 COG2197; transcriptional regulator 1887828 7951656 HDEF_2060 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924775.1 1887205 R 340054 CDS YP_002924776.1 238899094 7951657 complement(1887924..1888775) 1 NC_012751.1 COG0788; formyltetrahydrofolate hydrolase 1888775 purU 7951657 purU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) formyltetrahydrofolate hydrolase YP_002924776.1 1887924 R 340054 CDS YP_002924777.1 238899095 7951658 1888796..1888954 1 NC_012751.1 hypothetical protein 1888954 7951658 HDEF_2062 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924777.1 1888796 D 340054 CDS YP_002924778.1 238899096 7951659 complement(1889017..1889439) 1 NC_012751.1 COG2916; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability 1889439 hns 7951659 hns Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability YP_002924778.1 1889017 R 340054 CDS YP_002924779.1 238899097 7951660 complement(1889929..1891395) 1 NC_012751.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1891395 cls 7951660 cls Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cardiolipin synthetase YP_002924779.1 1889929 R 340054 CDS YP_002924780.1 238899098 7951661 1892001..1892579 1 NC_012751.1 outer membrane protease, receptor for phage OX2 1892579 ompX 7951661 ompX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane protease, receptor for phage OX2 YP_002924780.1 1892001 D 340054 CDS YP_002924781.1 238899099 7951662 1892656..1893378 1 NC_012751.1 energy transducer; uptake of iron, cyanocobalimin 1893378 tonB 7951662 tonB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) energy transducer; uptake of iron, cyanocobalimin YP_002924781.1 1892656 D 340054 CDS YP_002924782.1 238899100 7951663 complement(1893431..1893973) 1 NC_012751.1 COG2917; membrane protein, intracellular septation protein 1893973 ispZ 7951663 ispZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane protein, intracellular septation protein YP_002924782.1 1893431 R 340054 CDS YP_002924783.1 238899101 7951664 complement(1893975..1894730) 1 NC_012751.1 hypothetical protein 1894730 7951664 HDEF_2068 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924783.1 1893975 R 340054 CDS YP_002924784.1 238899102 7951666 1895268..1896377 1 NC_012751.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1896377 asd 7951666 asd Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aspartate-semialdehyde dehydrogenase YP_002924784.1 1895268 D 340054 CDS YP_002924785.1 238899103 7951667 1896482..1897339 1 NC_012751.1 glycosyltransferase group 2 1897339 7951667 HDEF_2071 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycosyltransferase group 2 YP_002924785.1 1896482 D 340054 CDS YP_002924786.1 238899104 7951668 1897368..1898621 1 NC_012751.1 COG3307; O-antigen biosynthesis protein 1898621 7951668 HDEF_2072 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) O-antigen biosynthesis protein YP_002924786.1 1897368 D 340054 CDS YP_002924787.1 238899105 7951669 1898676..1899332 1 NC_012751.1 COG0120; ribose-5-phosphate isomerase A 1899332 rpiA 7951669 rpiA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribose-5-phosphate isomerase A YP_002924787.1 1898676 D 340054 CDS YP_002924788.1 238899106 7951670 1899339..1900580 1 NC_012751.1 COG0111; D-3-phosphoglycerate dehydrogenase 1900580 serA 7951670 serA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-3-phosphoglycerate dehydrogenase YP_002924788.1 1899339 D 340054 CDS YP_002924789.1 238899107 7951671 complement(1900594..1901205) 1 NC_012751.1 COG0212; 5-formyltetrahydrofolate cyclo-ligase 1901205 7951671 HDEF_2075 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 5-formyltetrahydrofolate cyclo-ligase YP_002924789.1 1900594 R 340054 CDS YP_002924790.1 238899108 7951672 complement(1901630..1901965) 1 NC_012751.1 COG3027; Z-ring-associated protein 1901965 zapA 7951672 zapA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Z-ring-associated protein YP_002924790.1 1901630 R 340054 CDS YP_002924791.1 238899109 7951673 complement(1902187..1902510) 1 NC_012751.1 hypothetical protein 1902510 7951673 HDEF_2078 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924791.1 1902187 R 340054 CDS YP_002924792.1 238899110 7951675 1902509..1902622 1 NC_012751.1 hypothetical protein 1902622 7951675 HDEF_2077 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924792.1 1902509 D 340054 CDS YP_002924793.1 238899111 7951674 1902632..1903642 1 NC_012751.1 COG0354; aminomethyltransferase 1903642 7951674 HDEF_2079 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aminomethyltransferase YP_002924793.1 1902632 D 340054 CDS YP_002924794.1 238899112 7951676 complement(1903594..1904808) 1 NC_012751.1 COG0654; hypothetical protein 1904808 7951676 HDEF_2080 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924794.1 1903594 R 340054 CDS YP_002924795.1 238899113 7951677 1905017..1905538 1 NC_012751.1 COG2840; hypothetical protein 1905538 7951677 HDEF_2081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924795.1 1905017 D 340054 CDS YP_002924796.1 238899114 7951678 complement(1905574..1905678) 1 NC_012751.1 hypothetical protein 1905678 7951678 HDEF_2082 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924796.1 1905574 R 340054 CDS YP_002924797.1 238899115 7951679 1905731..1906678 1 NC_012751.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1906678 prsA 7951679 prsA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ribose-phosphate pyrophosphokinase YP_002924797.1 1905731 D 340054 CDS YP_002924798.1 238899116 7951680 1906716..1907309 1 NC_012751.1 COG0193; peptidyl-tRNA hydrolase 1907309 pth 7951680 pth Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptidyl-tRNA hydrolase YP_002924798.1 1906716 D 340054 CDS YP_002924799.1 238899117 7951681 1907582..1908199 1 NC_012751.1 COG3070; hypothetical protein 1908199 sxy 7951681 sxy Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924799.1 1907582 D 340054 CDS YP_002924800.1 238899118 7951682 1908348..1908905 1 NC_012751.1 COG0503; adenine phosphoribosyltransferase 1908905 apt 7951682 apt Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenine phosphoribosyltransferase YP_002924800.1 1908348 D 340054 CDS YP_002924801.1 238899119 7951683 1908949..1910871 1 NC_012751.1 COG2812; DNA polymerase III, tau and gamma subunits; DNA elongation factor III 1910871 dnaX 7951683 dnaX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA polymerase III, tau and gamma subunits; DNA elongation factor III YP_002924801.1 1908949 D 340054 CDS YP_002924802.1 238899120 7951684 1910913..1911239 1 NC_012751.1 COG0718; hypothetical protein 1911239 7951684 HDEF_2088 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924802.1 1910913 D 340054 CDS YP_002924803.1 238899121 7951685 1911243..1911851 1 NC_012751.1 COG0353; gap repair protein 1911851 recR 7951685 recR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) gap repair protein YP_002924803.1 1911243 D 340054 CDS YP_002924804.1 238899122 7951686 1911886..1911987 1 NC_012751.1 hypothetical protein 1911987 7951686 HDEF_2090 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924804.1 1911886 D 340054 CDS YP_002924805.1 238899123 7951687 complement(1911910..1912020) 1 NC_012751.1 hypothetical protein 1912020 7951687 HDEF_2091 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924805.1 1911910 R 340054 CDS YP_002924806.1 238899124 7951688 1912667..1912798 1 NC_012751.1 hypothetical protein 1912798 7951688 HDEF_2092 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924806.1 1912667 D 340054 CDS YP_002924807.1 238899125 7951689 1913030..1914952 1 NC_012751.1 molecular chaperone; heat shock protein 90 1914952 htpG 7951689 htpG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) heat shock protein 90 YP_002924807.1 1913030 D 340054 CDS YP_002924808.1 238899126 7951690 1914967..1915068 1 NC_012751.1 hypothetical protein 1915068 7951690 HDEF_2094 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924808.1 1914967 D 340054 CDS YP_002924809.1 238899127 7951691 1915122..1915772 1 NC_012751.1 COG0563; adenylate kinase 1915772 adk 7951691 adk Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) adenylate kinase YP_002924809.1 1915122 D 340054 CDS YP_002924810.1 238899128 7951692 complement(1916444..1919164) 1 NC_012751.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1919164 secA 7951692 secA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) preprotein translocase subunit SecA YP_002924810.1 1916444 R 340054 CDS YP_002924811.1 238899129 7951693 1919269..1919817 1 NC_012751.1 COG4701; hypothetical protein 1919817 7951693 HDEF_2097 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924811.1 1919269 D 340054 CDS YP_002924812.1 238899130 7951694 complement(1919868..1921532) 1 NC_012751.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 1921532 asnB 7951694 asnB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) asparagine synthetase B YP_002924812.1 1919868 R 340054 CDS YP_002924813.1 238899131 7951695 complement(1921546..1923261) 1 NC_012751.1 COG3083; sulfatase 1923261 7951695 HDEF_2099 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sulfatase YP_002924813.1 1921546 R 340054 CDS YP_002924814.1 238899132 7951696 complement(1923496..1924275) 1 NC_012751.1 COG0623; enoyl-ACP reductase (NADH) 1924275 fabI 7951696 fabI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) enoyl-ACP reductase (NADH) YP_002924814.1 1923496 R 340054 CDS YP_002924815.1 238899133 7951697 complement(1924370..1925185) 1 NC_012751.1 COG4167; peptide transport protein (ABC superfamily, atp_bind) 1925185 sapF 7951697 sapF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide transport protein (ABC superfamily, atp_bind) YP_002924815.1 1924370 R 340054 CDS YP_002924816.1 238899134 7951698 complement(1925185..1926177) 1 NC_012751.1 COG4170; peptide transport protein (ABC superfamily, atp_bind) 1926177 sapD 7951698 sapD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide transport protein (ABC superfamily, atp_bind) YP_002924816.1 1925185 R 340054 CDS YP_002924817.1 238899135 7951699 complement(1926177..1927076) 1 NC_012751.1 COG4171; peptide transport protein (ABC superfamily, membrane) 1927076 sapC 7951699 sapC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide transport protein (ABC superfamily, membrane) YP_002924817.1 1926177 R 340054 CDS YP_002924818.1 238899136 7951700 complement(1927063..1928025) 1 NC_012751.1 COG4168; peptide transport protein (ABC superfamily, membrane) 1928025 sapB 7951700 sapB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide transport protein (ABC superfamily, membrane) YP_002924818.1 1927063 R 340054 CDS YP_002924819.1 238899137 7951702 complement(1928804..1929424) 1 NC_012751.1 COG0279; D-sedoheptulose 7-phosphate isomerase 1929424 lpcA 7951702 lpcA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) D-sedoheptulose 7-phosphate isomerase YP_002924819.1 1928804 R 340054 CDS YP_002924820.1 238899138 7951703 1929622..1930479 1 NC_012751.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1930479 rpoH 7951703 rpoH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase factor sigma-32 YP_002924820.1 1929622 D 340054 CDS YP_002924821.1 238899139 7951704 complement(1930525..1931247) 1 NC_012751.1 NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase 1931247 fre 7951704 fre Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) FMN reductase YP_002924821.1 1930525 R 340054 CDS YP_002924822.1 238899140 7951705 complement(1931248..1932735) 1 NC_012751.1 COG0043; 3-octaprenyl-4-hydroxybenzoate decarboxylase 1932735 ubiD 7951705 ubiD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-octaprenyl-4-hydroxybenzoate decarboxylase YP_002924822.1 1931248 R 340054 CDS YP_002924823.1 238899141 7951706 1932857..1933345 1 NC_012751.1 COG0250; transcriptional activator RfaH 1933345 rfaH 7951706 rfaH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional activator RfaH YP_002924823.1 1932857 D 340054 CDS YP_002924824.1 238899142 7951707 complement(1933352..1934368) 1 NC_012751.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1934368 hemB 7951707 hemB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) delta-aminolevulinic acid dehydratase YP_002924824.1 1933352 R 340054 CDS YP_002924825.1 238899143 7951709 complement(1934645..1935202) 1 NC_012751.1 COG3028; hypothetical protein 1935202 7951709 HDEF_2113 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924825.1 1934645 R 340054 CDS YP_002924826.1 238899144 7951710 complement(1935228..1936388) 1 NC_012751.1 COG0754; glutathionylspermidine synthase 1936388 7951710 HDEF_2114 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glutathionylspermidine synthase YP_002924826.1 1935228 R 340054 CDS YP_002924827.1 238899145 7951711 complement(1936409..1937101) 1 NC_012751.1 COG5463; hypothetical protein 1937101 7951711 HDEF_2115 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924827.1 1936409 R 340054 CDS YP_002924828.1 238899146 7951712 complement(1937207..1938064) 1 NC_012751.1 COG2890; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 1938064 prmC 7951712 prmC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 YP_002924828.1 1937207 R 340054 CDS YP_002924829.1 238899147 7951713 complement(1938066..1939148) 1 NC_012751.1 COG0216; peptide chain release factor RF-1 1939148 prfA 7951713 prfA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide chain release factor RF-1 YP_002924829.1 1938066 R 340054 CDS YP_002924830.1 238899148 7951715 1940662..1941312 1 NC_012751.1 COG3017; outer membrane component involved in lipoprotein localization 1941312 lolB 7951715 lolB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane component involved in lipoprotein localization YP_002924830.1 1940662 D 340054 CDS YP_002924831.1 238899149 7951716 1941309..1942184 1 NC_012751.1 COG1947; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 1942184 ispE 7951716 ispE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase YP_002924831.1 1941309 D 340054 CDS YP_002924832.1 238899150 7951717 complement(1942186..1943541) 1 NC_012751.1 COG1823; transport protein 1943541 ydjN 7951717 ydjN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transport protein YP_002924832.1 1942186 R 340054 CDS YP_002924833.1 238899151 7951718 complement(1943541..1944092) 1 NC_012751.1 COG1988; LexA regulated protein 1944092 ydjM 7951718 ydjM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) LexA regulated protein YP_002924833.1 1943541 R 340054 CDS YP_002924834.1 238899152 7951719 complement(1944089..1944919) 1 NC_012751.1 COG1108; iron ABC transporter permease 1944919 yfeD 7951719 yfeD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) iron ABC transporter permease YP_002924834.1 1944089 R 340054 CDS YP_002924835.1 238899153 7951720 complement(1944919..1945794) 1 NC_012751.1 COG1108; chelated iron transport system membrane protein 1945794 yfeC 7951720 yfeC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) chelated iron transport system membrane protein YP_002924835.1 1944919 R 340054 CDS YP_002924836.1 238899154 7951721 complement(1945795..1946685) 1 NC_012751.1 COG1121; iron ABC transporter ATP-binding protein 1946685 yfeB 7951721 yfeB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) iron ABC transporter ATP-binding protein YP_002924836.1 1945795 R 340054 CDS YP_002924837.1 238899155 7951722 complement(1946682..1947665) 1 NC_012751.1 COG0803; iron ABC transporter periplasmic iron binding protein 1947665 yfeA 7951722 yfeA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) iron ABC transporter periplasmic iron binding protein YP_002924837.1 1946682 R 340054 CDS YP_002924838.1 238899156 7951723 1947813..1948619 1 NC_012751.1 COG3021; hypothetical protein 1948619 yafD 7951723 yafD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924838.1 1947813 D 340054 CDS YP_002924839.1 238899157 7951724 complement(1948630..1949865) 1 NC_012751.1 COG0741; membrane-bound lytic murein transglycosylase 1949865 7951724 HDEF_2128 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound lytic murein transglycosylase YP_002924839.1 1948630 R 340054 CDS YP_002924840.1 238899158 7951725 complement(1950038..1950787) 1 NC_012751.1 COG0491; hydroxyacylglutathione hydrolase 1950787 gloB 7951725 gloB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hydroxyacylglutathione hydrolase YP_002924840.1 1950038 R 340054 CDS YP_002924841.1 238899159 7951726 1950841..1951548 1 NC_012751.1 COG0500; S-adenosyl-L-methionine-dependent methyltransferase 1951548 yafS 7951726 yafS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) S-adenosyl-L-methionine-dependent methyltransferase YP_002924841.1 1950841 D 340054 CDS YP_002924842.1 238899160 7951727 1951836..1953884 1 NC_012751.1 COG1629; TonB-dependent hemin receptor 1953884 hmuR 7951727 hmuR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TonB-dependent hemin receptor YP_002924842.1 1951836 D 340054 CDS YP_002924843.1 238899161 7951728 1953962..1955017 1 NC_012751.1 COG3720; hemin transport 1955017 hmuS 7951728 hmuS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hemin transport YP_002924843.1 1953962 D 340054 CDS YP_002924844.1 238899162 7951729 1955034..1955855 1 NC_012751.1 COG4558; hemin ABC transporter periplasmic substrate-binding 1955855 hmuT 7951729 hmuT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hemin ABC transporter periplasmic substrate-binding YP_002924844.1 1955034 D 340054 CDS YP_002924845.1 238899163 7951730 1955852..1956850 1 NC_012751.1 COG0609; hemin ABC transporter permease 1956850 hmuU 7951730 hmuU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hemin ABC transporter permease YP_002924845.1 1955852 D 340054 CDS YP_002924846.1 238899164 7951731 1956841..1957671 1 NC_012751.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 1957671 hmuV 7951731 hmuV Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hemin importer ATP-binding subunit YP_002924846.1 1956841 D 340054 CDS YP_002924847.1 238899165 7951732 complement(1957730..1957828) 1 NC_012751.1 hypothetical protein 1957828 7951732 HDEF_2136 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924847.1 1957730 R 340054 CDS YP_002924848.1 238899166 7951733 complement(1957810..1958121) 1 NC_012751.1 C terminal truncation, similar to APSE protein P43; COG3617; antirepressor 1958121 7951733 HDEF_2137 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) antirepressor YP_002924848.1 1957810 R 340054 CDS YP_002924849.1 238899167 7951734 1958235..1958594 1 NC_012751.1 ISHde6, transposase 1958594 7951734 HDEF_2138 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde6, transposase YP_002924849.1 1958235 D 340054 CDS YP_002924850.1 238899168 7951735 1958666..1959058 1 NC_012751.1 ISHde6, transposase 1959058 7951735 HDEF_2139 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde6, transposase YP_002924850.1 1958666 D 340054 CDS YP_002924851.1 238899169 7951736 complement(1959089..1959370) 1 NC_012751.1 ISHde2, transposase 1959370 7951736 HDEF_2140 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924851.1 1959089 R 340054 CDS YP_002924852.1 238899170 7951737 complement(1959511..1959876) 1 NC_012751.1 ISHde2, transposase 1959876 7951737 HDEF_2141 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde2, transposase YP_002924852.1 1959511 R 340054 CDS YP_002924853.1 238899171 7951739 1960439..1960657 1 NC_012751.1 hypothetical protein 1960657 7951739 HDEF_2143 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924853.1 1960439 D 340054 CDS YP_002924854.1 238899172 7951740 complement(1960678..1960929) 1 NC_012751.1 hypothetical protein 1960929 7951740 HDEF_2144 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924854.1 1960678 R 340054 CDS YP_002924855.1 238899173 7951741 complement(1960926..1961555) 1 NC_012751.1 COG1192; plasmid partition protein ParA-like protein 1961555 7951741 HDEF_2145 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002924855.1 1960926 R 340054 CDS YP_002924856.1 238899174 7951742 complement(1961724..1961909) 1 NC_012751.1 hypothetical protein 1961909 7951742 HDEF_2146 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924856.1 1961724 R 340054 CDS YP_002924857.1 238899175 7951743 1962144..1963511 1 NC_012751.1 RTX-family protein-26 1963511 rtxA_26 7951743 rtxA_26 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-26 YP_002924857.1 1962144 D 340054 CDS YP_002924858.1 238899176 7951745 complement(1964886..1965281) 1 NC_012751.1 COG1487; hypothetical protein 1965281 7951745 HDEF_2149 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924858.1 1964886 R 340054 CDS YP_002924859.1 238899177 7951746 complement(1965278..1965514) 1 NC_012751.1 hypothetical protein 1965514 7951746 HDEF_2150 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924859.1 1965278 R 340054 CDS YP_002924860.1 238899178 7951747 complement(1965879..1966439) 1 NC_012751.1 COG1961; inversion of adjacent DNA 1966439 7951747 HDEF_2151 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) inversion of adjacent DNA YP_002924860.1 1965879 R 340054 CDS YP_002924861.1 238899179 7951748 1966588..1967079 1 NC_012751.1 acetyltransferase 1967079 7951748 HDEF_2152 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) acetyltransferase YP_002924861.1 1966588 D 340054 CDS YP_002924862.1 238899180 7951749 1967321..1967932 1 NC_012751.1 COG3547; ISHde7, transposase 1967932 7951749 HDEF_2153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7, transposase YP_002924862.1 1967321 D 340054 CDS YP_002924863.1 238899181 7951750 1967901..1968251 1 NC_012751.1 COG3547; ISHde7, transposase 1968251 7951750 HDEF_2154 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde7, transposase YP_002924863.1 1967901 D 340054 CDS YP_002924864.1 238899182 7951752 complement(1968539..1968703) 1 NC_012751.1 hypothetical protein 1968703 7951752 HDEF_2156 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924864.1 1968539 R 340054 CDS YP_002924865.1 238899183 7951754 1969761..1969988 1 NC_012751.1 addiction module antitoxin 1969988 7951754 HDEF_2158 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module antitoxin YP_002924865.1 1969761 D 340054 CDS YP_002924866.1 238899184 7951755 1969990..1970319 1 NC_012751.1 addiction module toxin 1970319 7951755 HDEF_2159 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module toxin YP_002924866.1 1969990 D 340054 CDS YP_002924867.1 238899185 7951756 complement(1970337..1970456) 1 NC_012751.1 hypothetical protein 1970456 7951756 HDEF_2160 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924867.1 1970337 R 340054 CDS YP_002924868.1 238899186 7951757 complement(1970495..1970623) 1 NC_012751.1 hypothetical protein 1970623 7951757 HDEF_2161 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924868.1 1970495 R 340054 CDS YP_002924869.1 238899187 7951758 1970659..1970790 1 NC_012751.1 hypothetical protein 1970790 7951758 HDEF_2162 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924869.1 1970659 D 340054 CDS YP_002924870.1 238899188 7951759 complement(1970823..1972376) 1 NC_012751.1 COG2194; transmembrane protein (N-terminal); phosphatase (C-terminal) 1972376 ybiP 7951759 ybiP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transmembrane protein (N-terminal); phosphatase (C-terminal) YP_002924870.1 1970823 R 340054 CDS YP_002924871.1 238899189 7951760 1972798..1972932 1 NC_012751.1 hypothetical protein 1972932 7951760 HDEF_2164 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924871.1 1972798 D 340054 CDS YP_002924872.1 238899190 7951761 complement(1973060..1973746) 1 NC_012751.1 hypothetical protein 1973746 7951761 HDEF_2165 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924872.1 1973060 R 340054 CDS YP_002924873.1 238899191 7951763 1975404..1975589 1 NC_012751.1 hypothetical protein 1975589 7951763 HDEF_2167 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924873.1 1975404 D 340054 CDS YP_002924874.1 238899192 7951765 complement(1976270..1976713) 1 NC_012751.1 hypothetical protein 1976713 7951765 HDEF_2170 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924874.1 1976270 R 340054 CDS YP_002924876.1 238899193 7951767 1976513..1976770 1 NC_012751.1 COG4691; addiction module 1976770 stbC_2 7951767 stbC_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002924876.1 1976513 D 340054 CDS YP_002924877.1 238899194 7951766 complement(1977922..1978026) 1 NC_012751.1 hypothetical protein 1978026 7951766 HDEF_2172 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924877.1 1977922 R 340054 CDS YP_002924878.1 238899195 7951768 1978397..1979305 1 NC_012751.1 hypothetical protein 1979305 7951768 HDEF_2173 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924878.1 1978397 D 340054 CDS YP_002924879.1 238899196 7951769 1979229..1981364 1 NC_012751.1 hypothetical protein 1981364 7951769 HDEF_2174 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924879.1 1979229 D 340054 CDS YP_002924880.1 238899197 7951770 complement(1981443..1982051) 1 NC_012751.1 N terminal truncation; COG3316; transposase 1982051 7951770 HDEF_2175 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transposase YP_002924880.1 1981443 R 340054 CDS YP_002924881.1 238899198 7951771 1982441..1983076 1 NC_012751.1 plasmid partition protein ParA-like protein 1983076 7951771 HDEF_2176 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid partition protein ParA-like protein YP_002924881.1 1982441 D 340054 CDS YP_002924882.1 238899199 7951772 1983073..1983309 1 NC_012751.1 hypothetical protein 1983309 7951772 HDEF_2177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924882.1 1983073 D 340054 CDS YP_002924883.1 238899200 7951774 1984433..1984741 1 NC_012751.1 MobB relaxase/mobilization protein 1984741 mobB_5 7951774 mobB_5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002924883.1 1984433 D 340054 CDS YP_002924884.1 238899201 7951776 complement(1985315..1985719) 1 NC_012751.1 ISHde1, transposase 1985719 7951776 HDEF_2181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924884.1 1985315 R 340054 CDS YP_002924885.1 238899202 7951777 complement(1985760..1986137) 1 NC_012751.1 ISHde1, transposase 1986137 7951777 HDEF_2182 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924885.1 1985760 R 340054 CDS YP_002924886.1 238899203 7951780 1987338..1987652 1 NC_012751.1 COG3514; hypothetical protein 1987652 7951780 HDEF_2185 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924886.1 1987338 D 340054 CDS YP_002924887.1 238899204 7951782 complement(1988280..1989200) 1 NC_012751.1 phage tail fiber protein 1989200 7951782 HDEF_2187 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail fiber protein YP_002924887.1 1988280 R 340054 CDS YP_002924888.1 238899205 7951783 complement(1989255..1989659) 1 NC_012751.1 ISHde1, transposase 1989659 7951783 HDEF_2188 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924888.1 1989255 R 340054 CDS YP_002924889.1 238899206 7951784 complement(1989700..1990077) 1 NC_012751.1 ISHde1, transposase 1990077 7951784 HDEF_2189 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924889.1 1989700 R 340054 CDS YP_002924890.1 238899207 7951787 1991278..1991592 1 NC_012751.1 COG3514; hypothetical protein 1991592 7951787 HDEF_2192 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924890.1 1991278 D 340054 CDS YP_002924891.1 238899208 7951789 complement(1992220..1993140) 1 NC_012751.1 phage tail fiber protein 1993140 7951789 HDEF_2194 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail fiber protein YP_002924891.1 1992220 R 340054 CDS YP_002924892.1 238899209 7951790 complement(1993195..1993599) 1 NC_012751.1 ISHde1, transposase 1993599 7951790 HDEF_2195 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924892.1 1993195 R 340054 CDS YP_002924893.1 238899210 7951791 complement(1993640..1994017) 1 NC_012751.1 ISHde1, transposase 1994017 7951791 HDEF_2196 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924893.1 1993640 R 340054 CDS YP_002924894.1 238899211 7951794 1995218..1995532 1 NC_012751.1 COG3514; hypothetical protein 1995532 7951794 HDEF_2199 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924894.1 1995218 D 340054 CDS YP_002924895.1 238899212 7951796 complement(1996160..1997080) 1 NC_012751.1 phage tail fiber protein 1997080 7951796 HDEF_2201 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail fiber protein YP_002924895.1 1996160 R 340054 CDS YP_002924896.1 238899213 7951797 complement(1997135..1997539) 1 NC_012751.1 ISHde1, transposase 1997539 7951797 HDEF_2202 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924896.1 1997135 R 340054 CDS YP_002924897.1 238899214 7951798 complement(1997580..1997957) 1 NC_012751.1 ISHde1, transposase 1997957 7951798 HDEF_2203 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924897.1 1997580 R 340054 CDS YP_002924898.1 238899215 7951799 complement(1998008..1998517) 1 NC_012751.1 phage tail protein I 1998517 7951799 HDEF_2204 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage tail protein I YP_002924898.1 1998008 R 340054 CDS YP_002924899.1 238899216 7951800 complement(1998519..1999400) 1 NC_012751.1 COG3948; phage baseplate J-like protein 1999400 7951800 HDEF_2205 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage baseplate J-like protein YP_002924899.1 1998519 R 340054 CDS YP_002924900.1 238899217 7951801 complement(1999397..1999732) 1 NC_012751.1 COG3628; phage T4-like baseplate assembly protein with lysozyme activity 1999732 7951801 HDEF_2206 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage T4-like baseplate assembly protein with lysozyme activity YP_002924900.1 1999397 R 340054 CDS YP_002924901.1 238899218 7951802 complement(1999729..2000307) 1 NC_012751.1 phage baseplate assembly protein 2000307 7951802 HDEF_2207 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage baseplate assembly protein YP_002924901.1 1999729 R 340054 CDS YP_002924902.1 238899219 7951803 complement(2000304..2000807) 1 NC_012751.1 hypothetical protein 2000807 7951803 HDEF_2208 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924902.1 2000304 R 340054 CDS YP_002924903.1 238899220 7951804 complement(2000835..2001284) 1 NC_012751.1 phage virion morphogenesis protein 2001284 7951804 HDEF_2209 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phage virion morphogenesis protein YP_002924903.1 2000835 R 340054 CDS YP_002924904.1 238899221 7951805 complement(2001284..2001712) 1 NC_012751.1 hypothetical protein 2001712 7951805 HDEF_2210 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924904.1 2001284 R 340054 CDS YP_002924905.1 238899222 7951806 complement(2001719..2002003) 1 NC_012751.1 hypothetical protein 2002003 7951806 HDEF_2211 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924905.1 2001719 R 340054 CDS YP_002924906.1 238899223 7951807 complement(2002005..2002787) 1 NC_012751.1 C terminal truncation; Mu-like prophage I protein 2002787 7951807 HDEF_2212 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like prophage I protein YP_002924906.1 2002005 R 340054 CDS YP_002924907.1 238899224 7951808 complement(2002914..2003213) 1 NC_012751.1 COG3636; addiction module 2003213 7951808 HDEF_2213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002924907.1 2002914 R 340054 CDS YP_002924908.1 238899225 7951809 complement(2003210..2003506) 1 NC_012751.1 COG3657; addiction module 2003506 7951809 HDEF_2214 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module YP_002924908.1 2003210 R 340054 CDS YP_002924909.1 238899226 7951810 complement(2003548..2003679) 1 NC_012751.1 hypothetical protein 2003679 7951810 HDEF_2215 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924909.1 2003548 R 340054 CDS YP_002924910.1 238899227 7951811 complement(2003661..2004305) 1 NC_012751.1 COG2369; Mu-like prophage F protein 2004305 7951811 HDEF_2216 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Mu-like prophage F protein YP_002924910.1 2003661 R 340054 CDS YP_002924911.1 238899228 7951812 complement(2004305..2004751) 1 NC_012751.1 hypothetical protein 2004751 7951812 HDEF_2217 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924911.1 2004305 R 340054 CDS YP_002924912.1 238899229 7951813 2005353..2005448 1 NC_012751.1 hypothetical protein 2005448 7951813 HDEF_2218 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924912.1 2005353 D 340054 CDS YP_002924913.1 238899230 7951814 2005583..2006317 1 NC_012751.1 COG0500; methyltransferase 2006317 7951814 HDEF_2219 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methyltransferase YP_002924913.1 2005583 D 340054 CDS YP_002924914.1 238899231 7951815 complement(2006568..2007956) 1 NC_012751.1 sugar transporter major facilitator superfamily 2007956 7951815 HDEF_2220 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sugar transporter major facilitator superfamily YP_002924914.1 2006568 R 340054 CDS YP_002924915.1 238899232 7951816 complement(2008037..2008468) 1 NC_012751.1 C terminal truncation; COG0371; glycerol dehydrogenase, NAD 2008468 gldA 7951816 gldA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) glycerol dehydrogenase, NAD YP_002924915.1 2008037 R 340054 CDS YP_002924916.1 238899233 7951817 2008913..2009029 1 NC_012751.1 hypothetical protein 2009029 7951817 HDEF_2222 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924916.1 2008913 D 340054 CDS YP_002924917.1 238899234 7951818 2009164..2009412 1 NC_012751.1 hypothetical protein 2009412 7951818 HDEF_2223 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924917.1 2009164 D 340054 CDS YP_002924918.1 238899235 7951819 2009583..2009777 1 NC_012751.1 hypothetical protein 2009777 7951819 HDEF_2224 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924918.1 2009583 D 340054 CDS YP_002924919.1 238899236 7951821 2010764..2011030 1 NC_012751.1 hypothetical protein 2011030 7951821 HDEF_2226 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924919.1 2010764 D 340054 CDS YP_002924920.1 238899237 7951824 complement(2011747..2012094) 1 NC_012751.1 N terminal truncation; transcriptional regulator 2012094 7951824 HDEF_2229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924920.1 2011747 R 340054 CDS YP_002924921.1 238899238 7951825 2012221..2012463 1 NC_012751.1 hypothetical protein 2012463 7951825 HDEF_2230 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924921.1 2012221 D 340054 CDS YP_002924922.1 238899239 7951826 complement(2012836..2013147) 1 NC_012751.1 COG1872; hypothetical protein 2013147 7951826 HDEF_2231 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924922.1 2012836 R 340054 CDS YP_002924923.1 238899240 7951827 2013160..2013549 1 NC_012751.1 COG0229; methionine sulfoxide reductase 2013549 msrB_2 7951827 msrB_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methionine sulfoxide reductase YP_002924923.1 2013160 D 340054 CDS YP_002924924.1 238899241 7951829 complement(2014387..2014698) 1 NC_012751.1 N terminal truncation; hypothetical protein 2014698 7951829 HDEF_2235 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924924.1 2014387 R 340054 CDS YP_002924925.1 238899242 7951831 2014671..2014769 1 NC_012751.1 hypothetical protein 2014769 7951831 HDEF_2234 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924925.1 2014671 D 340054 CDS YP_002924926.1 238899243 7951830 complement(2014886..2014981) 1 NC_012751.1 hypothetical protein 2014981 7951830 HDEF_2236 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924926.1 2014886 R 340054 CDS YP_002924927.1 238899244 7951832 2015006..2015734 1 NC_012751.1 hypothetical protein 2015734 7951832 HDEF_2237 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924927.1 2015006 D 340054 CDS YP_002924928.1 238899245 7951833 2015765..2016271 1 NC_012751.1 N terminal truncation; COG5585; ADP-ribosyltransferase toxin-2 2016271 aexT_2 7951833 aexT_2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ADP-ribosyltransferase toxin-2 YP_002924928.1 2015765 D 340054 CDS YP_002924929.1 238899246 7951834 complement(2016539..2017726) 1 NC_012751.1 hypothetical protein 2017726 7951834 HDEF_2239 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924929.1 2016539 R 340054 CDS YP_002924930.1 238899247 7951835 2017755..2017862 1 NC_012751.1 hypothetical protein 2017862 7951835 HDEF_2240 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924930.1 2017755 D 340054 CDS YP_002924931.1 238899248 7951836 2018220..2018597 1 NC_012751.1 ISHde1, transposase 2018597 7951836 HDEF_2241 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924931.1 2018220 D 340054 CDS YP_002924932.1 238899249 7951837 2018638..2019042 1 NC_012751.1 ISHde1, transposase 2019042 7951837 HDEF_2242 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde1, transposase YP_002924932.1 2018638 D 340054 CDS YP_002924933.1 238899250 7951838 2019151..2019297 1 NC_012751.1 hypothetical protein 2019297 7951838 HDEF_2243 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924933.1 2019151 D 340054 CDS YP_002924934.1 238899251 7951839 2019302..2020609 1 NC_012751.1 phosphoanhydride phosphorylase 2020609 appA 7951839 appA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphoanhydride phosphorylase YP_002924934.1 2019302 D 340054 CDS YP_002924935.1 238899252 7951840 2020756..2021265 1 NC_012751.1 N terminal truncation; COG0350; bifunctional transcriptional regulator of DNA repair (N-terminal); O6-methylguanine-DNA methyltransferase 2021265 ada 7951840 ada Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional transcriptional regulator of DNA repair (N-terminal); O6-methylguanine-DNA methyltransferase YP_002924935.1 2020756 D 340054 CDS YP_002924936.1 238899253 7951842 2021751..2023181 1 NC_012751.1 COG1027; aspartate ammonia-lyase (aspartase) 2023181 aspA 7951842 aspA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) aspartate ammonia-lyase (aspartase) YP_002924936.1 2021751 D 340054 CDS YP_002924937.1 238899254 7951843 complement(2023253..2024311) 1 NC_012751.1 member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU 2024311 ssaU 7951843 ssaU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) secretion system apparatus protein SsaU YP_002924937.1 2023253 R 340054 CDS YP_002924938.1 238899255 7951844 complement(2024314..2025099) 1 NC_012751.1 COG4791; type III secretion system apparatus protein 2025099 ssaT 7951844 ssaT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002924938.1 2024314 R 340054 CDS YP_002924939.1 238899256 7951845 complement(2025101..2025370) 1 NC_012751.1 COG4794; type III secretion system apparatus protein 2025370 ssaS 7951845 ssaS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system apparatus protein YP_002924939.1 2025101 R 340054 CDS YP_002924940.1 238899257 7951846 complement(2025367..2026017) 1 NC_012751.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 2026017 ssaR 7951846 ssaR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type III secretion system protein YP_002924940.1 2025367 R 340054 CDS YP_002924941.1 238899258 7951847 complement(2026160..2026873) 1 NC_012751.1 COG0704; transcriptional repressor for high-affinity phosphate uptake 2026873 phoU 7951847 phoU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional repressor for high-affinity phosphate uptake YP_002924941.1 2026160 R 340054 CDS YP_002924942.1 238899259 7951848 complement(2026887..2027651) 1 NC_012751.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2027651 pstB 7951848 pstB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphate transporter ATP-binding protein YP_002924942.1 2026887 R 340054 CDS YP_002924943.1 238899260 7951849 complement(2027807..2028709) 1 NC_012751.1 Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA 2028709 pstA 7951849 pstA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphate transporter permease subunit PtsA YP_002924943.1 2027807 R 340054 CDS YP_002924944.1 238899261 7951850 complement(2028710..2029666) 1 NC_012751.1 part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC 2029666 pstC 7951850 pstC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphate transporter permease subunit PstC YP_002924944.1 2028710 R 340054 CDS YP_002924945.1 238899262 7951851 complement(2029907..2030926) 1 NC_012751.1 COG0226; phosphate ABC transporter 2030926 pstS 7951851 pstS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) phosphate ABC transporter YP_002924945.1 2029907 R 340054 CDS YP_002924946.1 238899263 7951852 complement(2030991..2031092) 1 NC_012751.1 hypothetical protein 2031092 7951852 HDEF_2258 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924946.1 2030991 R 340054 CDS YP_002924947.1 238899264 7951854 2031054..2031155 1 NC_012751.1 hypothetical protein 2031155 7951854 HDEF_2257 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924947.1 2031054 D 340054 CDS YP_002924948.1 238899265 7951853 complement(2031077..2031169) 1 NC_012751.1 hypothetical protein 2031169 7951853 HDEF_2259 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924948.1 2031077 R 340054 CDS YP_002924949.1 238899266 7951855 2031317..2032153 1 NC_012751.1 PilM-like ATPase type IV pilus biogenesis protein 2032153 pilM_4 7951855 pilM_4 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilM-like ATPase type IV pilus biogenesis protein YP_002924949.1 2031317 D 340054 CDS YP_002924950.1 238899267 7951856 2032153..2032689 1 NC_012751.1 fimbrial assembly protein 2032689 pilN_5 7951856 pilN_5 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) fimbrial assembly protein YP_002924950.1 2032153 D 340054 CDS YP_002924951.1 238899268 7951857 2032701..2033300 1 NC_012751.1 hypothetical protein 2033300 7951857 HDEF_2262 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924951.1 2032701 D 340054 CDS YP_002924952.1 238899269 7951858 2033293..2033700 1 NC_012751.1 hypothetical protein 2033700 7951858 HDEF_2263 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924952.1 2033293 D 340054 CDS YP_002924953.1 238899270 7951859 2033747..2035006 1 NC_012751.1 outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 2035006 hofQ 7951859 hofQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane porin HofQ YP_002924953.1 2033747 D 340054 CDS YP_002924954.1 238899271 7951860 complement(2035079..2035186) 1 NC_012751.1 hypothetical protein 2035186 7951860 HDEF_2265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924954.1 2035079 R 340054 CDS YP_002924955.1 238899272 7951861 complement(2035198..2036430) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_2267 and HDEF_2268; RTX-family protein-29 2036430 rtxA_29 7951861 rtxA_29 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-29 YP_002924955.1 2035198 R 340054 CDS YP_002924956.1 238899273 7951862 complement(2036459..2038756) 1 NC_012751.1 Possible C and N terminal truncations with HDEF_2266 and HDEF_2268; RTX-family protein-28 2038756 rtxA_28 7951862 rtxA_28 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-28 YP_002924956.1 2036459 R 340054 CDS YP_002924957.1 238899274 7951863 complement(2038699..2041548) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_2266 and HDEF_2267; RTX-family protein-27 2041548 rtxA_27 7951863 rtxA_27 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-27 YP_002924957.1 2038699 R 340054 CDS YP_002924958.1 238899275 7951864 complement(2042330..2042644) 1 NC_012751.1 COG2823; hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene protein 2042644 osmY 7951864 osmY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene protein YP_002924958.1 2042330 R 340054 CDS YP_002924959.1 238899276 7951865 2042947..2043828 1 NC_012751.1 COG0613; hypothetical protein 2043828 7951865 HDEF_2270 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924959.1 2042947 D 340054 CDS YP_002924960.1 238899277 7951866 2043836..2044456 1 NC_012751.1 COG0009; translation factor 2044456 7951866 HDEF_2271 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) translation factor YP_002924960.1 2043836 D 340054 CDS YP_002924961.1 238899278 7951867 2044525..2045391 1 NC_012751.1 COG1187; pseudouridine synthase (makes pseudouridine2605 in 23 S RNA) 2045391 yciL 7951867 yciL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pseudouridine synthase (makes pseudouridine2605 in 23 S RNA) YP_002924961.1 2044525 D 340054 CDS YP_002924962.1 238899279 7951868 2045968..2047554 1 NC_012751.1 COG4108; peptide chain release factor RF-3 2047554 prfC 7951868 prfC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) peptide chain release factor RF-3 YP_002924962.1 2045968 D 340054 CDS YP_002924963.1 238899280 7951869 complement(2047642..2048712) 1 NC_012751.1 COG0407; uroporphyrinogen decarboxylase 2048712 hemE 7951869 hemE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) uroporphyrinogen decarboxylase YP_002924963.1 2047642 R 340054 CDS YP_002924964.1 238899281 7951870 complement(2048876..2049982) 1 NC_012751.1 COG3203; outer membrane pore protein N, non-specific 2049982 ompN 7951870 ompN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) outer membrane pore protein N, non-specific YP_002924964.1 2048876 R 340054 CDS YP_002924965.1 238899282 7951872 complement(2051120..2051290) 1 NC_012751.1 hypothetical protein 2051290 7951872 HDEF_2277 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924965.1 2051120 R 340054 CDS YP_002924966.1 238899283 7951874 complement(2051717..2051827) 1 NC_012751.1 hypothetical protein 2051827 7951874 HDEF_2279 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924966.1 2051717 R 340054 CDS YP_002924967.1 238899284 7951875 complement(2051869..2052216) 1 NC_012751.1 C terminal truncation, similar to APSE protein P43 disrupted by IS; COG3617; antirepressor 2052216 7951875 HDEF_2281 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) antirepressor YP_002924967.1 2051869 R 340054 CDS YP_002924968.1 238899285 7951877 2052169..2052468 1 NC_012751.1 COG2963; ISHde3, transposase 2052468 7951877 HDEF_2280 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde3, transposase YP_002924968.1 2052169 D 340054 CDS YP_002924969.1 238899286 7951876 2052685..2053086 1 NC_012751.1 COG2801; ISHde3, transposase 2053086 7951876 HDEF_2282 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ISHde3, transposase YP_002924969.1 2052685 D 340054 CDS YP_002924970.1 238899287 7951878 2053321..2053464 1 NC_012751.1 hypothetical protein 2053464 7951878 HDEF_2283 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924970.1 2053321 D 340054 CDS YP_002924971.1 238899288 7951879 complement(2053390..2053533) 1 NC_012751.1 hypothetical protein 2053533 7951879 HDEF_2284 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924971.1 2053390 R 340054 CDS YP_002924972.1 238899289 7951880 2053557..2053658 1 NC_012751.1 hypothetical protein 2053658 7951880 HDEF_2285 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924972.1 2053557 D 340054 CDS YP_002924973.1 238899290 7951881 2053812..2054717 1 NC_012751.1 cell division inhibitor, NAD(P)-binding 2054717 yfcH 7951881 yfcH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division inhibitor, NAD(P)-binding YP_002924973.1 2053812 D 340054 CDS YP_002924974.1 238899291 7951882 complement(2054764..2054946) 1 NC_012751.1 hypothetical protein 2054946 7951882 HDEF_2287 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924974.1 2054764 R 340054 CDS YP_002924975.1 238899292 7951883 2055052..2055588 1 NC_012751.1 COG0716; flavodoxin 1 2055588 fldA 7951883 fldA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) flavodoxin 1 YP_002924975.1 2055052 D 340054 CDS YP_002924976.1 238899293 7951884 2055678..2056130 1 NC_012751.1 COG0735; transcriptional repressor of iron transport (Fur family) 2056130 fur 7951884 fur Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional repressor of iron transport (Fur family) YP_002924976.1 2055678 D 340054 CDS YP_002924977.1 238899294 7951885 2056330..2057505 1 NC_012751.1 hypothetical protein 2057505 7951885 HDEF_2290 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924977.1 2056330 D 340054 CDS YP_002924978.1 238899295 7951887 complement(2057927..2058307) 1 NC_012751.1 COG0736; holo-ACP synthase 2058307 acpS 7951887 acpS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) holo-ACP synthase YP_002924978.1 2057927 R 340054 CDS YP_002924979.1 238899296 7951888 complement(2058307..2059035) 1 NC_012751.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2059035 pdxJ 7951888 pdxJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) pyridoxine 5'-phosphate synthase YP_002924979.1 2058307 R 340054 CDS YP_002924980.1 238899297 7951889 2059275..2059766 1 NC_012751.1 hypothetical protein 2059766 7951889 HDEF_2294 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924980.1 2059275 D 340054 CDS YP_002924981.1 238899298 7951890 complement(2059877..2061400) 1 NC_012751.1 Possible N terminal truncation, paired with HDEF_2296 and HDEF_2298; RTX-family protein-32 2061400 rtxA_32 7951890 rtxA_32 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-32 YP_002924981.1 2059877 R 340054 CDS YP_002924982.1 238899299 7951891 complement(2061849..2063759) 1 NC_012751.1 Possible C and N terminal truncations with HDEF_2295 and HDEF_2298; RTX-family protein-31 2063759 rtxA_31 7951891 rtxA_31 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-31 YP_002924982.1 2061849 R 340054 CDS YP_002924983.1 238899300 7951892 complement(2063926..2065191) 1 NC_012751.1 Possible C terminal truncation, paired with HDEF_2295 and HDEF_2296; RTX-family protein-30 2065191 rtxA_30 7951892 rtxA_30 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RTX-family protein-30 YP_002924983.1 2063926 R 340054 CDS YP_002924984.1 238899301 7951894 2065177..2065305 1 NC_012751.1 hypothetical protein 2065305 7951894 HDEF_2297 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924984.1 2065177 D 340054 CDS YP_002924985.1 238899302 7951893 2065377..2067131 1 NC_012751.1 COG1067; ATP-dependent protease 2067131 ycbZ 7951893 ycbZ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) ATP-dependent protease YP_002924985.1 2065377 D 340054 CDS YP_002924986.1 238899303 7951895 2067202..2067717 1 NC_012751.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 2067717 fabA 7951895 fabA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 3-hydroxydecanoyl-(acyl carrier protein) dehydratase YP_002924986.1 2067202 D 340054 CDS YP_002924987.1 238899304 7951896 2067747..2068757 1 NC_012751.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 2068757 rsmC 7951896 rsmC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S ribosomal RNA m2G1207 methyltransferase YP_002924987.1 2067747 D 340054 CDS YP_002924988.1 238899305 7951897 2068867..2069577 1 NC_012751.1 hypothetical protein 2069577 7951897 HDEF_2302 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924988.1 2068867 D 340054 CDS YP_002924989.1 238899306 7951898 2069693..2071723 1 NC_012751.1 COG0210; Rep helicase, a single-stranded DNA-dependent ATPase 2071723 rep 7951898 rep Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) Rep helicase, a single-stranded DNA-dependent ATPase YP_002924989.1 2069693 D 340054 CDS YP_002924990.1 238899307 7951899 2071793..2073046 1 NC_012751.1 COG0538; isocitrate dehydrogenase, specific for NADP+ 2073046 icdA 7951899 icdA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) isocitrate dehydrogenase, specific for NADP+ YP_002924990.1 2071793 D 340054 CDS YP_002924991.1 238899308 7951900 complement(2073146..2073247) 1 NC_012751.1 hypothetical protein 2073247 7951900 HDEF_2305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924991.1 2073146 R 340054 CDS YP_002924992.1 238899309 7951901 complement(2073400..2074350) 1 NC_012751.1 ABC transporter membrane protein; cell division protein FtsX 2074350 ftsX 7951901 ftsX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein FtsX YP_002924992.1 2073400 R 340054 CDS YP_002924993.1 238899310 7951902 complement(2074322..2075008) 1 NC_012751.1 COG2884; cell division protein for septal ring assimbly and stability 2075008 ftsE 7951902 ftsE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein for septal ring assimbly and stability YP_002924993.1 2074322 R 340054 CDS YP_002924994.1 238899311 7951903 complement(2075005..2076132) 1 NC_012751.1 COG0552; cell division protein 2076132 ftsY 7951903 ftsY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cell division protein YP_002924994.1 2075005 R 340054 CDS YP_002924995.1 238899312 7951904 2076222..2076869 1 NC_012751.1 COG0742; 16S rRNA m(2)G966-methyltransferase 2076869 7951904 HDEF_2309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S rRNA m(2)G966-methyltransferase YP_002924995.1 2076222 D 340054 CDS YP_002924996.1 238899313 7951905 complement(2076830..2077642) 1 NC_012751.1 COG0561; sugar phosphatase 2077642 7951905 HDEF_2310 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) sugar phosphatase YP_002924996.1 2076830 R 340054 CDS YP_002924997.1 238899314 7951907 2078363..2079808 1 NC_012751.1 hypothetical protein 2079808 7951907 HDEF_2312 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924997.1 2078363 D 340054 CDS YP_002924998.1 238899315 7951908 complement(2080041..2080724) 1 NC_012751.1 transcriptional regulator 2080724 7951908 HDEF_2313 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional regulator YP_002924998.1 2080041 R 340054 CDS YP_002924999.1 238899316 7951909 complement(2080830..2081120) 1 NC_012751.1 hypothetical protein 2081120 7951909 HDEF_2314 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002924999.1 2080830 R 340054 CDS YP_002925000.1 238899317 7951910 complement(2081625..2081717) 1 NC_012751.1 hypothetical protein 2081717 7951910 HDEF_2315 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925000.1 2081625 R 340054 CDS YP_002925001.1 238899318 7951911 2081962..2084895 1 NC_012751.1 COG0553; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) 2084895 hepA 7951911 hepA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) YP_002925001.1 2081962 D 340054 CDS YP_002925002.1 238899319 7951912 2084941..2086146 1 NC_012751.1 COG0452; bifunctional 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding 2086146 dfp 7951912 dfp Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) bifunctional 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding YP_002925002.1 2084941 D 340054 CDS YP_002925003.1 238899320 7951913 2086133..2086588 1 NC_012751.1 COG0756; deoxyuridinetriphosphatase 2086588 dut 7951913 dut Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) deoxyuridinetriphosphatase YP_002925003.1 2086133 D 340054 CDS YP_002925004.1 238899321 7951914 2086682..2087611 1 NC_012751.1 C terminal truncation; virulence factor 2087611 7951914 HDEF_2319 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) virulence factor YP_002925004.1 2086682 D 340054 CDS YP_002925005.1 238899322 7951915 2087577..2089142 1 NC_012751.1 N terminal truncation; virulence factor 2089142 7951915 HDEF_2320 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) virulence factor YP_002925005.1 2087577 D 340054 CDS YP_002925006.1 238899323 7951970 2089688..2091370 1 NC_012751.1 reverse transcriptase 2091370 7951970 HDEF_2321 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) reverse transcriptase YP_002925006.1 2089688 D 340054 CDS YP_002925007.1 238899324 7951917 2091380..2091883 1 NC_012751.1 N terminal truncation; hypothetical protein 2091883 7951917 HDEF_2322 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925007.1 2091380 D 340054 CDS YP_002925008.1 238899325 7951918 complement(2091958..2092305) 1 NC_012751.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2092305 rplS 7951918 rplS Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal protein L19 YP_002925008.1 2091958 R 340054 CDS YP_002925009.1 238899326 7951919 complement(2092372..2093172) 1 NC_012751.1 COG0336; tRNA (guanine-1-)-methyltransferase 2093172 trmD 7951919 trmD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA (guanine-1-)-methyltransferase YP_002925009.1 2092372 R 340054 CDS YP_002925010.1 238899327 7951920 complement(2093172..2093696) 1 NC_012751.1 COG0806; 16S rRNA processing protein 2093696 rimM 7951920 rimM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 16S rRNA processing protein YP_002925010.1 2093172 R 340054 CDS YP_002925011.1 238899328 7951921 complement(2093724..2093984) 1 NC_012751.1 COG0228; 30S ribosomal subunit protein S16 2093984 rpsP 7951921 rpsP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 30S ribosomal subunit protein S16 YP_002925011.1 2093724 R 340054 CDS YP_002925012.1 238899329 7951922 complement(2094126..2095487) 1 NC_012751.1 COG0541; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA 2095487 ffh 7951922 ffh Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA YP_002925012.1 2094126 R 340054 CDS YP_002925013.1 238899330 7951923 2095666..2096448 1 NC_012751.1 COG4137; cytochrome c assembly protein 2096448 7951923 HDEF_2328 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) cytochrome c assembly protein YP_002925013.1 2095666 D 340054 CDS YP_002925014.1 238899331 7951924 2096492..2097754 1 NC_012751.1 COG4536; hypothetical protein 2097754 corB 7951924 corB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925014.1 2096492 D 340054 CDS YP_002925015.1 238899332 7951925 2097793..2098092 1 NC_012751.1 hypothetical protein 2098092 7951925 HDEF_2330 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925015.1 2097793 D 340054 CDS YP_002925016.1 238899333 7951926 complement(2098142..2099710) 1 NC_012751.1 COG2918; gamma-glutamate-cysteine ligase 2099710 gshA 7951926 gshA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) gamma-glutamate-cysteine ligase YP_002925016.1 2098142 R 340054 CDS YP_002925017.1 238899334 7951927 complement(2099814..2100071) 1 NC_012751.1 COG0211; 50S ribosomal subunit protein L27 2100071 rpmA 7951927 rpmA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L27 YP_002925017.1 2099814 R 340054 CDS YP_002925018.1 238899335 7951928 complement(2100092..2100403) 1 NC_012751.1 COG0261; 50S ribosomal subunit protein L21 2100403 rplU 7951928 rplU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 50S ribosomal subunit protein L21 YP_002925018.1 2100092 R 340054 CDS YP_002925019.1 238899336 7951929 complement(2100683..2101102) 1 NC_012751.1 COG0355; membrane-bound ATP synthase, F1 sector, epsilon-subunit 2101102 atpC 7951929 atpC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F1 sector, epsilon-subunit YP_002925019.1 2100683 R 340054 CDS YP_002925020.1 238899337 7951930 complement(2101127..2102509) 1 NC_012751.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2102509 atpA 7951930 atpA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) F0F1 ATP synthase subunit beta YP_002925020.1 2101127 R 340054 CDS YP_002925021.1 238899338 7951931 complement(2102537..2103406) 1 NC_012751.1 COG0224; membrane-bound ATP synthase, F1 sector, gamma-subunit 2103406 atpG 7951931 atpG Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F1 sector, gamma-subunit YP_002925021.1 2102537 R 340054 CDS YP_002925022.1 238899339 7951932 complement(2103447..2104988) 1 NC_012751.1 COG0056; membrane-bound ATP synthase, F1 sector, beta-subunit 2104988 atpD 7951932 atpD Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F1 sector, beta-subunit YP_002925022.1 2103447 R 340054 CDS YP_002925023.1 238899340 7951933 complement(2105056..2105586) 1 NC_012751.1 COG0712; membrane-bound ATP synthase, F1 sector, delta-subunit 2105586 atpH 7951933 atpH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F1 sector, delta-subunit YP_002925023.1 2105056 R 340054 CDS YP_002925024.1 238899341 7951934 complement(2105601..2106071) 1 NC_012751.1 COG0711; membrane-bound ATP synthase, F0 sector, subunit b 2106071 atpF 7951934 atpF Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F0 sector, subunit b YP_002925024.1 2105601 R 340054 CDS YP_002925025.1 238899342 7951935 complement(2106135..2106374) 1 NC_012751.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2106374 atpE 7951935 atpE Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) F0F1 ATP synthase subunit C YP_002925025.1 2106135 R 340054 CDS YP_002925026.1 238899343 7951936 complement(2106461..2107285) 1 NC_012751.1 COG0356; membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly 2107285 atpB 7951936 atpB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly YP_002925026.1 2106461 R 340054 CDS YP_002925027.1 238899344 7951937 complement(2107453..2108088) 1 NC_012751.1 COG0357; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein 2108088 gidB 7951937 gidB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein YP_002925027.1 2107453 R 340054 CDS YP_002925028.1 238899345 7951938 complement(2108111..2109994) 1 NC_012751.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 2109994 gidA 7951938 gidA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002925028.1 2108111 R 340054 CDS YP_002925029.1 238899347 7952027 1..840 1 NC_012752.1 plasmid replication initiator protein 840 repA 7952027 repA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein YP_002925029.1 1 D 572265 CDS YP_002925030.1 238899348 7951973 2311..2982 1 NC_012752.1 putative transcriptional regulator, PAS domain protein 2982 7951973 HDEF_p0004 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) putative transcriptional regulator, PAS domain protein YP_002925030.1 2311 D 572265 CDS YP_002925031.1 238899349 7951974 complement(3239..5011) 1 NC_012752.1 COG0323; enzyme in methyl-directed mismatch repair 5011 mutL 7951974 mutL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) enzyme in methyl-directed mismatch repair YP_002925031.1 3239 R 572265 CDS YP_002925032.1 238899350 7951975 complement(5253..6356) 1 NC_012752.1 COG2850; hypothetical protein 6356 7951975 HDEF_p0006 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925032.1 5253 R 572265 CDS YP_002925033.1 238899351 7951976 6732..7292 1 NC_012752.1 COG1961; putative resolvase HDEF_p0007 7292 7951976 HDEF_p0007 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) putative resolvase HDEF_p0007 YP_002925033.1 6732 D 572265 CDS YP_002925034.1 238899352 7951977 7890..8285 1 NC_012752.1 COG1487; putative addiction module, PIN domain protein 8285 7951977 HDEF_p0008 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) putative addiction module, PIN domain protein YP_002925034.1 7890 D 572265 CDS YP_002925035.1 238899353 7951979 10605..11243 1 NC_012752.1 COG1192; hypothetical protein 11243 7951979 HDEF_p0010 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925035.1 10605 D 572265 CDS YP_002925036.1 238899354 7951980 11240..11476 1 NC_012752.1 hypothetical protein 11476 7951980 HDEF_p0011 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925036.1 11240 D 572265 CDS YP_002925037.1 238899355 7951981 12646..12954 1 NC_012752.1 MobB relaxase/mobilization protein 12954 mobB 7951981 mobB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobB relaxase/mobilization protein YP_002925037.1 12646 D 572265 CDS YP_002925038.1 238899356 7951982 12958..14850 1 NC_012752.1 MobA relaxase/mobilization protein 14850 mobA 7951982 mobA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) MobA relaxase/mobilization protein YP_002925038.1 12958 D 572265 CDS YP_002925039.1 238899357 7951983 14981..15322 1 NC_012752.1 COG0776; DNA-binding protein 15322 hu 7951983 hu Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA-binding protein YP_002925039.1 14981 D 572265 CDS YP_002925040.1 238899358 7951984 complement(15584..16510) 1 NC_012752.1 COG5464; putative transposase 16510 7951984 HDEF_p0015 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) putative transposase YP_002925040.1 15584 R 572265 CDS YP_002925041.1 238899359 7951985 complement(join(17231..18131,20477..21714)) 1 NC_012752.1 interrupted by GII intron; TrbC conjugal transfer protein 21714 trbC 7951985 trbC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbC conjugal transfer protein YP_002925041.1 17231 R 572265 CDS YP_002925043.1 238899360 7951986 complement(21707..22639) 1 NC_012752.1 TrbB conjugal transfer protein 22639 trbB 7951986 trbB Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbB conjugal transfer protein YP_002925043.1 21707 R 572265 CDS YP_002925044.1 238899361 7951987 complement(22715..23824) 1 NC_012752.1 TrbA conjugal transfer protein 23824 trbA 7951987 trbA Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TrbA conjugal transfer protein YP_002925044.1 22715 R 572265 CDS YP_002925045.1 238899362 7951988 23920..24207 1 NC_012752.1 hypothetical protein 24207 7951988 HDEF_p0020 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925045.1 23920 D 572265 CDS YP_002925046.1 238899363 7951989 24283..24558 1 NC_012752.1 hypothetical protein 24558 7951989 HDEF_p0021 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925046.1 24283 D 572265 CDS YP_002925047.1 238899364 7951990 complement(24581..25231) 1 NC_012752.1 hypothetical protein 25231 7951990 HDEF_p0022 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925047.1 24581 R 572265 CDS YP_002925048.1 238899365 7951991 complement(25287..27434) 1 NC_012752.1 TraY conjugal transfer protein 27434 traY 7951991 traY Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraY conjugal transfer protein YP_002925048.1 25287 R 572265 CDS YP_002925049.1 238899366 7951992 complement(27536..28084) 1 NC_012752.1 TraX conjugal transfer protein 28084 traX 7951992 traX Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraX conjugal transfer protein YP_002925049.1 27536 R 572265 CDS YP_002925050.1 238899367 7951993 complement(28077..29270) 1 NC_012752.1 TraW conjugal transfer protein 29270 traW 7951993 traW Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraW conjugal transfer protein YP_002925050.1 28077 R 572265 CDS YP_002925051.1 238899368 7951994 complement(29286..32375) 1 NC_012752.1 TraU conjugal transfer protein 32375 traU 7951994 traU Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraU conjugal transfer protein YP_002925051.1 29286 R 572265 CDS YP_002925052.1 238899369 7951996 32341..32688 1 NC_012752.1 COG3549; addiction module, toxin 32688 7951996 HDEF_p0026 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, toxin YP_002925052.1 32341 D 572265 CDS YP_002925053.1 238899370 7951995 32703..32990 1 NC_012752.1 COG3093; addiction module, antitoxin 32990 7951995 HDEF_p0028 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) addiction module, antitoxin YP_002925053.1 32703 D 572265 CDS YP_002925054.1 238899371 7951997 complement(33028..33630) 1 NC_012752.1 TraT conjugal transfer protein 33630 traT 7951997 traT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraT conjugal transfer protein YP_002925054.1 33028 R 572265 CDS YP_002925055.1 238899372 7951998 complement(33660..34055) 1 NC_012752.1 TraR conjugal transfer protein 34055 traR 7951998 traR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraR conjugal transfer protein YP_002925055.1 33660 R 572265 CDS YP_002925056.1 238899373 7951999 complement(34103..34642) 1 NC_012752.1 TraQ conjugal transfer protein 34642 traQ 7951999 traQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraQ conjugal transfer protein YP_002925056.1 34103 R 572265 CDS YP_002925057.1 238899374 7952000 complement(34656..35558) 1 NC_012752.1 TraP conjugal transfer protein 35558 traP 7952000 traP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraP conjugal transfer protein YP_002925057.1 34656 R 572265 CDS YP_002925058.1 238899375 7952001 complement(35434..36606) 1 NC_012752.1 TraO conjugal transfer protein 36606 traO 7952001 traO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraO conjugal transfer protein YP_002925058.1 35434 R 572265 CDS YP_002925059.1 238899376 7952002 complement(36610..37614) 1 NC_012752.1 TraN conjugal transfer protein 37614 traN 7952002 traN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraN conjugal transfer protein YP_002925059.1 36610 R 572265 CDS YP_002925060.1 238899377 7952003 complement(37611..38282) 1 NC_012752.1 TraM conjugal transfer protein 38282 traM 7952003 traM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraM conjugal transfer protein YP_002925060.1 37611 R 572265 CDS YP_002925061.1 238899378 7952004 complement(38307..38696) 1 NC_012752.1 TraL conjugal transfer protein 38696 traL 7952004 traL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraL conjugal transfer protein YP_002925061.1 38307 R 572265 CDS YP_002925062.1 238899379 7952005 complement(38749..41538) 1 NC_012752.1 COG4643; DNA primase TraC 41538 traC 7952005 traC Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) DNA primase TraC YP_002925062.1 38749 R 572265 CDS YP_002925063.1 238899380 7952006 complement(41553..41813) 1 NC_012752.1 TraK conjugal transfer protein 41813 traK 7952006 traK Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraK conjugal transfer protein YP_002925063.1 41553 R 572265 CDS YP_002925064.1 238899381 7952007 complement(41875..43041) 1 NC_012752.1 COG2805; TraJ conjugal transfer protein 43041 traJ 7952007 traJ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraJ conjugal transfer protein YP_002925064.1 41875 R 572265 CDS YP_002925065.1 238899382 7952008 complement(43028..43834) 1 NC_012752.1 TraI conjugal transfer protein 43834 traI 7952008 traI Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraI conjugal transfer protein YP_002925065.1 43028 R 572265 CDS YP_002925066.1 238899383 7952010 complement(43831..44274) 1 NC_012752.1 TraH conjugal transfer protein 44274 traH 7952010 traH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) TraH conjugal transfer protein YP_002925066.1 43831 R 572265 CDS YP_002925067.1 238899384 7952009 complement(44342..44806) 1 NC_012752.1 COG0741; PilT lytic transglycosylase, SLT domain protein 44806 pilT 7952009 pilT Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilT lytic transglycosylase, SLT domain protein YP_002925067.1 44342 R 572265 CDS YP_002925068.1 238899385 7952011 complement(44849..45475) 1 NC_012752.1 hypothetical protein 45475 7952011 HDEF_p0043 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925068.1 44849 R 572265 CDS YP_002925069.1 238899386 7952012 complement(45472..45903) 1 NC_012752.1 PilM type IV pilus biogenesis protein 45903 pilM 7952012 pilM Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilM type IV pilus biogenesis protein YP_002925069.1 45472 R 572265 CDS YP_002925070.1 238899387 7952013 complement(45953..47317) 1 NC_012752.1 PilV type IV pilus minor pilin subunit, shufflon protein 47317 pilV 7952013 pilV Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilV type IV pilus minor pilin subunit, shufflon protein YP_002925070.1 45953 R 572265 CDS YP_002925071.1 238899388 7952014 complement(47458..47967) 1 NC_012752.1 PilS2 type IV pilus biosynthesis protein 47967 pilS2 7952014 pilS2 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilS2 type IV pilus biosynthesis protein YP_002925071.1 47458 R 572265 CDS YP_002925072.1 238899389 7952015 complement(47978..49042) 1 NC_012752.1 PilR type IV pilus biosynthesis protein 49042 pilR 7952015 pilR Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilR type IV pilus biosynthesis protein YP_002925072.1 47978 R 572265 CDS YP_002925073.1 238899390 7952016 complement(49029..50576) 1 NC_012752.1 COG2804; PilQ type IV pilus biogenesis protein ATPase 50576 pilQ 7952016 pilQ Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilQ type IV pilus biogenesis protein ATPase YP_002925073.1 49029 R 572265 CDS YP_002925074.1 238899391 7952017 complement(50573..50983) 1 NC_012752.1 putative type IV pilus protein 50983 pilP 7952017 pilP Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) putative type IV pilus protein YP_002925074.1 50573 R 572265 CDS YP_002925075.1 238899392 7952018 complement(50970..52313) 1 NC_012752.1 PilO type IV pilus biogenesis outer membrane protein 52313 pilO 7952018 pilO Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilO type IV pilus biogenesis outer membrane protein YP_002925075.1 50970 R 572265 CDS YP_002925076.1 238899393 7952019 52349..52627 1 NC_012752.1 COG2929; hypothetical protein 52627 7952019 HDEF_p0051 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925076.1 52349 D 572265 CDS YP_002925077.1 238899394 7952020 52602..52889 1 NC_012752.1 COG3514; hypothetical protein 52889 7952020 HDEF_p0052 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925077.1 52602 D 572265 CDS YP_002925078.1 238899395 7952021 complement(52899..54581) 1 NC_012752.1 PilN type IV pilus biogenesis outer membrane protein 54581 pilN 7952021 pilN Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) PilN type IV pilus biogenesis outer membrane protein YP_002925078.1 52899 R 572265 CDS YP_002925079.1 238899396 7952022 complement(54578..55234) 1 NC_012752.1 type IV pilus biogenesis outer membrane protein precursor 55234 pilL 7952022 pilL Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) type IV pilus biogenesis outer membrane protein precursor YP_002925079.1 54578 R 572265 CDS YP_002925080.1 238899397 7952023 complement(55539..55988) 1 NC_012752.1 transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin 55988 rfaH 7952023 rfaH Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin YP_002925080.1 55539 R 572265 CDS YP_002925081.1 238899398 7952024 complement(56471..56854) 1 NC_012752.1 hypothetical protein 56854 7952024 HDEF_p0056 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925081.1 56471 R 572265 CDS YP_002925082.1 238899399 7952025 complement(56888..57565) 1 NC_012752.1 hypothetical protein 57565 7952025 HDEF_p0057 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) hypothetical protein YP_002925082.1 56888 R 572265 CDS YP_002925083.1 238899400 7952026 complement(57778..58308) 1 NC_012752.1 plasmid replication initiator protein-like protein 58308 7952026 HDEF_p0058 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid replication initiator protein-like protein YP_002925083.1 57778 R 572265 CDS