-- dump date 20120504_140829 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 572265000001 SEQ_END SEQ_END NC_012751.1 2110331 2110331 DR NC_012751.1; contig end 2110331..2110331 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 572265000002 SEQ_END SEQ_END NC_012752.1 59032 59032 DR NC_012752.1; contig end 59032..59032 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) YP_002922929.1 CDS mioC NC_012751.1 1 468 R required for biotin synthase activity; COG0716; FMN-binding protein complement(1..468) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951971 YP_002922930.1 CDS HDEF_0002 NC_012751.1 817 1650 D uncertain polar amino acid substrates; COG0834; polar amino acid ABC transporter periplasmic amino acid-binding subunit 817..1650 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949607 YP_002922931.1 CDS HDEF_0003 NC_012751.1 1791 2534 D uncertain polar amino acid substrates; COG0765; polar amino acid ABC transporter permease 1791..2534 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949608 YP_002922932.1 CDS HDEF_0004 NC_012751.1 2536 3213 D uncertain polar amino acid substrates; COG0765; polar amino acid ABC transporter permease 2536..3213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949609 YP_002922933.1 CDS HDEF_0006 NC_012751.1 4537 5013 R hypothetical protein complement(4537..5013) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949611 YP_002922934.1 CDS HDEF_0007 NC_012751.1 5243 5656 R C terminal truncation; COG3710; regulatory membrane protein complement(5243..5656) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949612 YP_002922935.1 CDS HDEF_0008 NC_012751.1 5869 6132 R N terminal truncation; hypothetical protein complement(5869..6132) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949613 YP_002922936.1 CDS lysS NC_012751.1 6813 8327 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(6813..8327) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949614 YP_002922937.1 CDS prfB NC_012751.1 8337 9383 R COG1186; peptide chain release factor RF-2 complement(8337..9383) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949615 YP_002922938.1 CDS HDEF_0011 NC_012751.1 9358 9462 R hypothetical protein complement(9358..9462) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949616 YP_002922939.1 CDS alaS NC_012751.1 9713 12340 D COG0013; alanyl-tRNA synthetase 9713..12340 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949617 YP_002922940.1 CDS csrA NC_012751.1 12533 12769 D post-translational activator of flhDC expression, regulates biofilm formation, RNA-binding; COG1551; carbon storage regulator 12533..12769 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949618 YP_002922941.1 CDS cvrA NC_012751.1 13264 15036 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(13264..15036) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949621 YP_002922942.1 CDS ftsK NC_012751.1 15234 15839 R required for chromosome resolution and partitioning; COG1674; DNA-binding membrane protein complement(15234..15839) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949622 YP_002922943.1 CDS HDEF_0019 NC_012751.1 17170 17262 D hypothetical protein 17170..17262 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949624 YP_002922944.1 CDS minC NC_012751.1 17243 17956 D inhibits FtsZ ring formation; COG0850; cell division inhibitor minC 17243..17956 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949625 YP_002922945.1 CDS minD NC_012751.1 17973 18785 D COG2894; cell division inhibitor minD 17973..18785 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949626 YP_002922946.1 CDS minE NC_012751.1 18789 19073 D COG0851; cell division topological specificity factor 18789..19073 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949627 YP_002922947.1 CDS gapA NC_012751.1 19273 20265 R COG0057; glyceraldehyde-3-phosphate dehydrogenase A complement(19273..20265) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949628 YP_002922948.1 CDS HDEF_0024 NC_012751.1 20522 21586 R COG0628; permease complement(20522..21586) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949629 YP_002922949.1 CDS recA NC_012751.1 21654 22718 R COG0468; DNA strand exchange and recombination protein with protease and nuclease activity complement(21654..22718) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949630 YP_002922950.1 CDS aat NC_012751.1 22978 23670 D COG2360; leucyl/phenylalanyl-tRNA-protein transferase 22978..23670 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949631 YP_002922951.1 CDS ubiH NC_012751.1 23655 24839 R COG0654; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding complement(23655..24839) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949632 YP_002922952.1 CDS rnb NC_012751.1 26421 28352 D Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 26421..28352 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949634 YP_002922953.1 CDS ribD NC_012751.1 28359 29537 R COG1985; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) complement(28359..29537) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949635 YP_002922954.1 CDS nrdR NC_012751.1 29550 30023 R COG1327; transcriptional regulator complement(29550..30023) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949636 YP_002922955.1 CDS recD NC_012751.1 30054 31940 R helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit alpha complement(30054..31940) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949637 YP_002922956.1 CDS recB NC_012751.1 31943 35569 R helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity; exonuclease V subunit beta complement(31943..35569) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949638 YP_002922957.1 CDS recC NC_012751.1 35535 38906 R catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination; exonuclease V subunit gamma complement(35535..38906) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949639 YP_002922958.1 CDS HDEF_0035 NC_012751.1 38965 39333 R possible prepilin peptidase; hypothetical protein complement(38965..39333) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949640 YP_002922959.1 CDS HDEF_0036 NC_012751.1 39375 39854 R hypothetical protein complement(39375..39854) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949641 YP_002922960.1 CDS pulJ NC_012751.1 39851 40468 R possibly in type IV pilin biogenesis; COG4795; hypothetical protein complement(39851..40468) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949642 YP_002922961.1 CDS HDEF_0038 NC_012751.1 40459 40959 R COG2165; hypothetical protein complement(40459..40959) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949643 YP_002922962.1 CDS HDEF_0039 NC_012751.1 40913 41047 R hypothetical protein complement(40913..41047) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949644 YP_002922963.1 CDS gnd NC_012751.1 41121 42533 R COG0362; gluconate-6-phosphate dehydrogenase, decarboxylating complement(41121..42533) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949645 YP_002922964.1 CDS galU NC_012751.1 42595 43488 R COG1210; glucose-1-phosphate uridylyltransferase complement(42595..43488) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949646 YP_002922965.1 CDS asmA NC_012751.1 43724 45553 R YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs; assembly protein complement(43724..45553) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949647 YP_002922966.1 CDS dcd NC_012751.1 45635 46216 R COG0717; 2'-deoxycytidine 5'-triphosphate deaminase complement(45635..46216) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949648 YP_002922967.1 CDS lnt NC_012751.1 46213 47802 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(46213..47802) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949649 YP_002922968.1 CDS HDEF_0045 NC_012751.1 47846 47938 D hypothetical protein 47846..47938 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949650 YP_002922969.1 CDS corC NC_012751.1 47892 48773 R COG4535; Mg2+ and Co2+ transporter complement(47892..48773) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949651 YP_002922970.1 CDS HDEF_0047 NC_012751.1 48846 49301 R COG0319; metal-dependent hydrolase complement(48846..49301) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949652 YP_002922971.1 CDS rfaD NC_012751.1 49531 50460 D COG0451; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 49531..50460 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949653 YP_002922972.1 CDS pgi NC_012751.1 50492 52138 D COG0166; glucosephosphate isomerase 50492..52138 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949654 YP_002922973.1 CDS cmrA NC_012751.1 52280 53521 D COG0477; multidrug/chloramphenicol efflux transport protein (MFS family) 52280..53521 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949655 YP_002922974.1 CDS cmrB NC_012751.1 53568 54818 D COG0477; multidrug/chloramphenicol efflux transport protein (MFS family) 53568..54818 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949656 YP_002922975.1 CDS sod NC_012751.1 54815 55444 D COG0605; superoxide dismutase, manganese 54815..55444 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949657 YP_002922976.1 CDS tpiA NC_012751.1 55476 56243 R COG0149; triosephosphate isomerase complement(55476..56243) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949658 YP_002922977.1 CDS fpr NC_012751.1 56323 57069 R COG1018; ferredoxin-NADP reductase complement(56323..57069) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949659 YP_002922978.1 CDS HDEF_0055 NC_012751.1 57102 57335 D COG2900; hypothetical protein 57102..57335 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949660 YP_002922979.1 CDS typA NC_012751.1 57343 59166 R COG1217; protein possibly involved in LPS biosynthesis and host colonization complement(57343..59166) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949661 YP_002922980.1 CDS bolA NC_012751.1 59531 59845 R important in general stress response; COG0271; transcriptional activator of morphogenic pathway (BolA family) complement(59531..59845) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949662 YP_002922981.1 CDS rgdC NC_012751.1 59842 60750 R involved in removal of stalled replication fork with Rh-like domain; COG2974; ribonuclease complement(59842..60750) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949663 YP_002922982.1 CDS sufA NC_012751.1 60938 61309 D COG0316; Fe-S cluster assembly protein 60938..61309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949664 YP_002922983.1 CDS sufB NC_012751.1 61360 62862 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 61360..62862 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949665 YP_002922984.1 CDS sufC NC_012751.1 62965 63705 D part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; cysteine desulfurase ATPase 62965..63705 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949666 YP_002922985.1 CDS sufD NC_012751.1 63686 64984 D COG0719; required for stability of Fe-S component of FhuF 63686..64984 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949667 YP_002922986.1 CDS sufS NC_012751.1 64981 66240 D COG0520; selenocysteine lyase, PLP-dependent 64981..66240 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949668 YP_002922987.1 CDS sufE NC_012751.1 66276 66704 D COG2166; stimulator of SufS activity 66276..66704 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949669 YP_002922988.1 CDS cyoE NC_012751.1 66701 67573 R COG0109; protoheme IX farnesyltransferase (heme O biosynthesis) complement(66701..67573) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949670 YP_002922989.1 CDS HDEF_0065 NC_012751.1 67476 67634 D hypothetical protein 67476..67634 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949672 YP_002922990.1 CDS cyoD NC_012751.1 67587 67985 R COG3125; cytochrome o ubiquinol oxidase, subunit IV complement(67587..67985) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949671 YP_002922991.1 CDS cyoC NC_012751.1 67986 68600 R COG1845; cytochrome o ubiquinol oxidase, subunit III complement(67986..68600) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949673 YP_002922992.1 CDS cyoB_1 NC_012751.1 68608 70599 R COG0843; cytochrome o ubiquinol oxidase, subunit I-1 complement(68608..70599) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949674 YP_002922993.1 CDS cyoA_1 NC_012751.1 70603 71490 R COG1622; cytochrome o ubiquinol oxidase, subunit II-1 complement(70603..71490) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949675 YP_002922994.1 CDS ubiF NC_012751.1 71670 72851 R catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase complement(71670..72851) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949676 YP_002922995.1 CDS accC NC_012751.1 72874 74217 R COG0439; acetyl CoA carboxylase, biotin carboxylase subunit complement(72874..74217) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949677 YP_002922996.1 CDS accB NC_012751.1 74229 74666 R COG0511; acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit complement(74229..74666) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949678 YP_002922997.1 CDS aroQ NC_012751.1 74677 75174 R COG0757; 3-dehydroquinate dehydratase, class II complement(74677..75174) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949679 YP_002922998.1 CDS aroH NC_012751.1 75277 76338 R tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; phospho-2-dehydro-3-deoxyheptonate aldolase complement(75277..76338) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949680 YP_002922999.1 CDS tusB NC_012751.1 76574 76855 R COG2168; tRNA 2-thiouridine synthesizing protein B complement(76574..76855) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949681 YP_002923000.1 CDS tusC NC_012751.1 76868 77239 R COG2923; tRNA 2-thiouridine synthesizing protein C complement(76868..77239) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949682 YP_002923001.1 CDS tusD NC_012751.1 77253 77651 R COG1553; tRNA 2-thiouridine synthesizing sulfurtransferase D complement(77253..77651) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949683 YP_002923002.1 CDS fkpA NC_012751.1 77708 78466 R COG0545; FKBP-type peptidyl-prolyl cis-trans isomerase complement(77708..78466) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949684 YP_002923003.1 CDS evgS NC_012751.1 78664 82293 D hybrid sensory histidine kinase in two-component regulatory system with EvgA, regulates multidrug resistance 78664..82293 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949685 YP_002923004.1 CDS HDEF_0081 NC_012751.1 82410 83477 D COG1054; hypothetical protein 82410..83477 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949686 YP_002923005.1 CDS secF NC_012751.1 83456 84424 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(83456..84424) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949687 YP_002923006.1 CDS secD NC_012751.1 84449 86302 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(84449..86302) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949688 YP_002923007.1 CDS yajC NC_012751.1 86448 86789 R COG1862; preprotein translocase, auxillary membrane component (General Secretory Pathway) complement(86448..86789) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949689 YP_002923008.1 CDS tgt NC_012751.1 86946 88058 R COG0343; tRNA-guanine transglycosylase complement(86946..88058) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949690 YP_002923009.1 CDS queA NC_012751.1 88097 89170 R COG0809; S-adenosylmethionine:tRNA (m6t6A37) ribosyltransferase-isomerase complement(88097..89170) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949691 YP_002923010.1 CDS ahpC NC_012751.1 89527 90150 D detoxification of hydroperoxides; COG0450; alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like protein 89527..90150 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949692 YP_002923011.1 CDS vacJ NC_012751.1 90250 91032 D COG2853; lipoprotein precursor 90250..91032 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949693 YP_002923012.1 CDS plsB NC_012751.1 91183 93633 D COG2937; glycerolphosphate acyltransferase 91183..93633 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949694 YP_002923013.1 CDS rhlB NC_012751.1 93636 94904 R COG0513; ATP-dependent RNA helicase complement(93636..94904) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949695 YP_002923014.1 CDS trxA NC_012751.1 95017 95343 D COG0526; thioredoxin 1, redox factor 95017..95343 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949696 YP_002923015.1 CDS fabB NC_012751.1 95464 96681 R COG0304; 3-oxoacyl-ACP synthase I complement(95464..96681) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949697 YP_002923016.1 CDS grxA NC_012751.1 96827 97099 R for glutathione-dependent ribonucleotide reductase; COG0695; glutaredoxin 1 redox coenzyme complement(96827..97099) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949698 YP_002923017.1 CDS dapE NC_012751.1 97158 98300 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(97158..98300) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949699 YP_002923018.1 CDS HDEF_0095 NC_012751.1 98297 98653 R COG1393; arsenate reductase ArsC complement(98297..98653) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949700 YP_002923019.1 CDS HDEF_0096 NC_012751.1 98695 99177 D chorismate mutase type II 98695..99177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949701 YP_002923020.1 CDS engB NC_012751.1 99216 99833 R COG0218; GTP-binding protein complement(99216..99833) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949702 YP_002923021.1 CDS HDEF_0099 NC_012751.1 100201 100326 R hypothetical protein complement(100201..100326) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949703 YP_002923022.1 CDS HDEF_0098 NC_012751.1 100255 100350 D hypothetical protein 100255..100350 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949705 YP_002923023.1 CDS aspC_1 NC_012751.1 100579 101769 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(100579..101769) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949704 YP_002923024.1 CDS hinT NC_012751.1 102123 102473 D COG0537; inhibitor of protein kinase C 102123..102473 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949706 YP_002923025.1 CDS HDEF_0102 NC_012751.1 102482 103078 D COG3417; lipoprotein 102482..103078 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949707 YP_002923026.1 CDS hrpA NC_012751.1 103075 106803 R COG1643; helicase, ATP-dependent complement(103075..106803) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949708 YP_002923027.1 CDS ribB NC_012751.1 107334 107990 R COG0108; 3,4 dihydroxy-2-butanone-4-phosphate synthase complement(107334..107990) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949710 YP_002923028.1 CDS HDEF_0106 NC_012751.1 108191 109966 R weakly similar to Wolbachia metallopeptidase; hypothetical protein complement(108191..109966) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949711 YP_002923029.1 CDS carA NC_012751.1 110088 111245 D COG0505; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit 110088..111245 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949712 YP_002923030.1 CDS carB NC_012751.1 111261 114485 D COG0458; carbamoyl phosphate synthase, large subunit 111261..114485 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949713 YP_002923031.1 CDS HDEF_0110 NC_012751.1 114975 115229 D COG4115; addiction module toxin 114975..115229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949715 YP_002923032.1 CDS HDEF_0111 NC_012751.1 115237 115359 R hypothetical protein complement(115237..115359) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949716 YP_002923033.1 CDS HDEF_0112 NC_012751.1 115495 116220 D hypothetical protein 115495..116220 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949717 YP_002923034.1 CDS yciH NC_012751.1 116621 116950 R COG0023; translation initiation factor complement(116621..116950) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949718 YP_002923035.1 CDS pyrF NC_012751.1 116957 117691 R COG0284; orotidine-5'-phosphate decarboxylase complement(116957..117691) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949719 YP_002923036.1 CDS HDEF_0115 NC_012751.1 117769 118947 R COG2956; hypothetical protein complement(117769..118947) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949720 YP_002923037.1 CDS HDEF_0116 NC_012751.1 118948 119265 R COG3771; hypothetical protein complement(118948..119265) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949721 YP_002923038.1 CDS pgpB NC_012751.1 119315 120052 R COG0671; phosphatidylglycerophosphatase B complement(119315..120052) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949722 YP_002923039.1 CDS ribA NC_012751.1 120206 120796 D COG0807; GTP cyclohydrolase II 120206..120796 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949723 YP_002923040.1 CDS HDEF_0119 NC_012751.1 120888 121910 D COG0861; integral membrane protein, tellurite resistance TerC family 120888..121910 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949724 YP_002923041.1 CDS tpx NC_012751.1 123065 123574 R COG2077; thiol peroxidase complement(123065..123574) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949725 YP_002923042.1 CDS mfd NC_012751.1 123840 127295 R COG1197; transcription-repair ATP-dependent coupling factor complement(123840..127295) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949726 YP_002923043.1 CDS lolC NC_012751.1 127457 128659 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolC 127457..128659 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949727 YP_002923044.1 CDS lolD NC_012751.1 128652 129362 D COG1136; transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) 128652..129362 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949728 YP_002923045.1 CDS lolE NC_012751.1 129365 130618 D COG4591; transport protein of outer membrane lipoproteins (ABC superfamily, membrane) 129365..130618 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949729 YP_002923046.1 CDS ssaQ NC_012751.1 130779 131741 R COG1886; type III secretion system protein complement(130779..131741) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949730 YP_002923047.1 CDS HDEF_0126 NC_012751.1 131803 132201 R hypothetical protein complement(131803..132201) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949731 YP_002923048.1 CDS ssaO NC_012751.1 132182 132565 R weak similarity and syntenic to ssaO from SPI-2; type III secretion system apparatus protein complement(132182..132565) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949732 YP_002923049.1 CDS ssaN NC_012751.1 132562 133902 R COG1157; type III secretion system ATPase complement(132562..133902) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949733 YP_002923050.1 CDS ssaV NC_012751.1 133889 135937 R with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system; secretion system apparatus protein SsaV complement(133889..135937) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949734 YP_002923051.1 CDS ssaM NC_012751.1 135928 136299 R type III secretion system apparatus protein complement(135928..136299) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949735 YP_002923052.1 CDS ssaL NC_012751.1 136310 137302 R type III secretion system apparatus protein complement(136310..137302) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949736 YP_002923053.1 CDS ssaK NC_012751.1 137299 137937 R type III secretion system apparatus protein complement(137299..137937) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949737 YP_002923054.1 CDS HDEF_0133 NC_012751.1 137934 138563 R hypothetical protein complement(137934..138563) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949738 YP_002923055.1 CDS ssaJ NC_012751.1 138560 139309 R COG4669; needle complex inner membrane lipoprotein complement(138560..139309) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949739 YP_002923056.1 CDS ssaI NC_012751.1 139306 139560 R type III secretion system apparatus protein complement(139306..139560) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949740 YP_002923057.1 CDS ssaH NC_012751.1 139611 139871 R type III secretion system apparatus protein complement(139611..139871) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949741 YP_002923058.1 CDS ssaG NC_012751.1 139868 140083 R type III secretion system apparatus protein complement(139868..140083) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949742 YP_002923059.1 CDS HDEF_0138 NC_012751.1 140099 140797 R COG2207; AraC family transcriptional regulator complement(140099..140797) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949743 YP_002923060.1 CDS HDEF_0139 NC_012751.1 141173 143374 D hypothetical protein 141173..143374 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949744 YP_002923061.1 CDS HDEF_0140 NC_012751.1 143618 143893 R hypothetical protein complement(143618..143893) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949745 YP_002923062.1 CDS sseD NC_012751.1 144048 145004 R weak similarity and syntenic to sseD from SPI-2; type III secretion translocon protein complement(144048..145004) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949746 YP_002923063.1 CDS sseC NC_012751.1 145050 146849 R type III secretion translocon protein complement(145050..146849) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949747 YP_002923064.1 CDS HDEF_0143 NC_012751.1 146966 147064 R hypothetical protein complement(146966..147064) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949748 YP_002923065.1 CDS sseB NC_012751.1 147129 148391 R weak similarity and syntenic to sseB from SPI-2; type III secretion translocon protein complement(147129..148391) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949749 YP_002923066.1 CDS ssaE NC_012751.1 148535 148789 R weak similarity and syntenic to ssaE from SPI-2; type III secretion system effector complement(148535..148789) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949750 YP_002923067.1 CDS ssaD NC_012751.1 148820 150058 R type III secretion apparatus protein complement(148820..150058) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949751 YP_002923068.1 CDS ssaC NC_012751.1 150062 151552 R COG1450; type III outer membrane secretin precursor complement(150062..151552) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949752 YP_002923069.1 CDS ssaB NC_012751.1 151692 152078 R weak similarity and syntenic to ssaB (spiC) from SPI-2; type III secreted effector protein complement(151692..152078) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949753 YP_002923070.1 CDS HDEF_0149 NC_012751.1 152252 154990 D COG0642; two-component sensor/regulator 152252..154990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949754 YP_002923071.1 CDS HDEF_0150 NC_012751.1 155062 155694 D COG2197; LuxR/UhpA family two-component regulatory system regulator 155062..155694 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949755 YP_002923072.1 CDS map NC_012751.1 155852 156661 D COG0024; methionine aminopeptidase 155852..156661 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949756 YP_002923073.1 CDS dapD NC_012751.1 156713 157558 D COG2171; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 156713..157558 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949757 YP_002923074.1 CDS HDEF_0153 NC_012751.1 157534 158937 D COG1611; lysine decarboxylase family protein 157534..158937 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949758 YP_002923075.1 CDS HDEF_0154 NC_012751.1 159009 159110 D hypothetical protein 159009..159110 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949759 YP_002923076.1 CDS recJ NC_012751.1 159830 161566 D COG0608; ssDNA exonuclease, 5' --> 3'-specific, Mg-dependent 159830..161566 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949760 YP_002923077.1 CDS HDEF_0156 NC_012751.1 161639 162103 R COG4811; hypothetical protein complement(161639..162103) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949761 YP_002923078.1 CDS manZ NC_012751.1 162190 163083 R hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID complement(162190..163083) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949762 YP_002923079.1 CDS manY NC_012751.1 163098 163901 R COG3715; PTS family enzyme IIC, mannose-specific complement(163098..163901) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949763 YP_002923080.1 CDS manX NC_012751.1 163953 164963 R COG3444; PTS family enzyme IIA (N-terminal); enzyme IIB (C-terminal), mannose-specific complement(163953..164963) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949764 YP_002923081.1 CDS glyA NC_012751.1 165339 166580 R COG0112; serine hydroxymethyltransferase complement(165339..166580) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949765 YP_002923082.1 CDS HDEF_0161 NC_012751.1 166963 167115 R hypothetical protein complement(166963..167115) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949766 YP_002923083.1 CDS HDEF_0163 NC_012751.1 167168 167362 R hypothetical protein complement(167168..167362) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949767 YP_002923084.1 CDS tolQ NC_012751.1 167223 167933 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolQ 167223..167933 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949769 YP_002923085.1 CDS tolR NC_012751.1 167968 168390 D membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 167968..168390 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949768 YP_002923086.1 CDS tolA NC_012751.1 168434 169381 D required for outer membrane integrity, uptake of group A colicins, role in translocation of filamenous phage DNA to cytoplasm, role in surface expression of O-antigen; tol protein A 168434..169381 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949770 YP_002923087.1 CDS tolB NC_012751.1 169453 170742 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 169453..170742 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949771 YP_002923088.1 CDS pal NC_012751.1 170782 171303 D required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA; COG2885; pal protein 170782..171303 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949772 YP_002923089.1 CDS ybgF NC_012751.1 171321 172094 D COG1729; protein prenylyltransferase 171321..172094 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949773 YP_002923090.1 CDS HDEF_0169 NC_012751.1 172623 173762 D similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 172623..173762 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949774 YP_002923091.1 CDS codB_1 NC_012751.1 173848 175158 D cytosine transport protein (NCS1 family) 173848..175158 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949775 YP_002923092.1 CDS HDEF_0171 NC_012751.1 175170 176252 D COG3535; hypothetical protein 175170..176252 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949776 YP_002923093.1 CDS HDEF_0172 NC_012751.1 176252 177829 D COG0145; hydantoinase 176252..177829 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949777 YP_002923094.1 CDS HDEF_0173 NC_012751.1 177878 178540 R transcriptional regulator complement(177878..178540) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949778 YP_002923095.1 CDS HDEF_0174 NC_012751.1 179602 179736 R hypothetical protein complement(179602..179736) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949779 YP_002923096.1 CDS HDEF_0175 NC_012751.1 179745 179843 D hypothetical protein 179745..179843 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949780 YP_002923097.1 CDS cpsG NC_012751.1 179871 181247 R colanic acid synthesis; COG1109; phosphomannomutase complement(179871..181247) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949781 YP_002923098.1 CDS HDEF_0177 NC_012751.1 181439 181660 D hypothetical protein 181439..181660 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949782 YP_002923099.1 CDS HDEF_0178 NC_012751.1 181710 182141 R hypothetical protein complement(181710..182141) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949783 YP_002923100.1 CDS galE_1 NC_012751.1 182219 183181 R COG0451; UDP-glucose 4-epimerase complement(182219..183181) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949784 YP_002923101.1 CDS HDEF_0180 NC_012751.1 183450 183569 D weakly similar to Firmicutes hypothetical gene; hypothetical protein 183450..183569 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949785 YP_002923102.1 CDS HDEF_0181 NC_012751.1 183842 185269 R O-antigen conversion protein complement(183842..185269) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949786 YP_002923103.1 CDS HDEF_0185 NC_012751.1 188314 189231 R fusion of GMHP sugar kinase and isomerase complement(188314..189231) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949790 YP_002923104.1 CDS HDEF_0187 NC_012751.1 189887 191788 R hypothetical protein complement(189887..191788) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949792 YP_002923105.1 CDS HDEF_0188 NC_012751.1 191820 192620 R glycosyltransferase group 2 complement(191820..192620) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949793 YP_002923106.1 CDS HDEF_0189 NC_012751.1 192651 193637 R COG0451; dTDP-glucose 4,6-dehydratase complement(192651..193637) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949794 YP_002923107.1 CDS galE_2 NC_012751.1 193809 194855 R COG1087; UDP-galactose 4-epimerase complement(193809..194855) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949795 YP_002923108.1 CDS HDEF_0191 NC_012751.1 195352 196530 R hypothetical protein complement(195352..196530) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949796 YP_002923109.1 CDS HDEF_0192 NC_012751.1 196688 197350 R hypothetical protein complement(196688..197350) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949797 YP_002923110.1 CDS HDEF_0193 NC_012751.1 197742 198764 R hypothetical protein complement(197742..198764) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949798 YP_002923111.1 CDS HDEF_0194 NC_012751.1 198765 199238 R COG0615; glycerol-3-phosphate cytidylyltransferase complement(198765..199238) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949799 YP_002923112.1 CDS HDEF_0195 NC_012751.1 199235 200308 R hypothetical protein complement(199235..200308) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949800 YP_002923113.1 CDS HDEF_0196 NC_012751.1 200298 201395 R glycosyltransferase group 1 complement(200298..201395) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949801 YP_002923114.1 CDS HDEF_0197 NC_012751.1 201399 202553 R CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(201399..202553) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949802 YP_002923115.1 CDS HDEF_0198 NC_012751.1 202609 202803 R C terminal truncation; COG3475; LicD family protein complement(202609..202803) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949803 YP_002923116.1 CDS HDEF_0200 NC_012751.1 203703 204452 R hypothetical protein complement(203703..204452) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949805 YP_002923117.1 CDS HDEF_0201 NC_012751.1 204471 205562 R aminotransferase class V complement(204471..205562) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949806 YP_002923118.1 CDS HDEF_0202 NC_012751.1 205562 206749 R thiamine pyrophosphate enzyme complement(205562..206749) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949807 YP_002923119.1 CDS HDEF_0203 NC_012751.1 206746 208467 R phosphoenolpyruvate phosphomutase complement(206746..208467) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949808 YP_002923120.1 CDS HDEF_0204 NC_012751.1 208467 209231 R sugar nucleotidyltransferase-like protein complement(208467..209231) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949809 YP_002923121.1 CDS HDEF_0205 NC_012751.1 209277 210782 R virulence factor mviN-like protein complement(209277..210782) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949810 YP_002923122.1 CDS HDEF_0206 NC_012751.1 210783 210944 R hypothetical protein complement(210783..210944) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949811 YP_002923123.1 CDS hemH NC_012751.1 210977 211936 R COG0276; ferrochelatase complement(210977..211936) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949812 YP_002923124.1 CDS accA NC_012751.1 212091 213056 R COG0825; acetylCoA carboxylase, carboxytransferase alpha colanic acid synthesis complement(212091..213056) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949813 YP_002923125.1 CDS dnaE NC_012751.1 213069 216551 R COG0587; DNA polymerase III, alpha subunit complement(213069..216551) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949814 YP_002923126.1 CDS HDEF_0210 NC_012751.1 216583 217254 R COG0602; hypothetical protein complement(216583..217254) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949815 YP_002923127.1 CDS crl NC_012751.1 217831 218244 D transcriptional regulator of cryptic genes for curli formation and fibronectin binding; involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS; DNA-binding transcriptional regulator Crl 217831..218244 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949816 YP_002923128.1 CDS nadE NC_012751.1 218398 220014 R COG0171; NAD synthetase complement(218398..220014) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949817 YP_002923129.1 CDS HDEF_0213 NC_012751.1 220115 221488 R COG0037; ATPase of the PP-loop superfamily complement(220115..221488) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949818 YP_002923130.1 CDS HDEF_0214 NC_012751.1 221736 222491 R COG3137; hypothetical protein complement(221736..222491) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949819 YP_002923131.1 CDS HDEF_0215 NC_012751.1 222508 222657 R hypothetical protein complement(222508..222657) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949820 YP_002923132.1 CDS HDEF_0216 NC_012751.1 222836 222943 D hypothetical protein 222836..222943 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949821 YP_002923133.1 CDS HDEF_0217 NC_012751.1 223003 224295 R hypothetical protein complement(223003..224295) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949822 YP_002923134.1 CDS HDEF_0218 NC_012751.1 224496 225419 R COG0330; inner membrane protein, SPFH/band 7 family complement(224496..225419) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949823 YP_002923135.1 CDS valS NC_012751.1 225497 228415 R COG0525; valine tRNA synthetase complement(225497..228415) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949824 YP_002923136.1 CDS holC NC_012751.1 228423 228875 R COG2927; DNA polymerase III, chi subunit complement(228423..228875) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949825 YP_002923137.1 CDS pepA NC_012751.1 228903 230408 R COG0260; aminopeptidase A, a cyteinylglycinase complement(228903..230408) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949826 YP_002923138.1 CDS HDEF_0222 NC_012751.1 230586 231680 D COG0795; permease 230586..231680 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949827 YP_002923139.1 CDS HDEF_0223 NC_012751.1 231680 232783 D COG0795; permease 231680..232783 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949828 YP_002923140.1 CDS ompA NC_012751.1 233034 234131 D OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; outer membrane protein A 233034..234131 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949829 YP_002923141.1 CDS glmS NC_012751.1 234305 236134 R COG0449; L-glutamine:D-fructose-6-phosphate aminotransferase complement(234305..236134) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949830 YP_002923142.1 CDS glmU NC_012751.1 236149 237516 R COG1207; bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase (N-terminal); glucosamine-1-phosphate acetyl transferase (C-terminal) complement(236149..237516) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949831 YP_002923143.1 CDS HDEF_0227 NC_012751.1 237705 238094 D COG0818; diacylglycerol kinase 237705..238094 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949832 YP_002923144.1 CDS HDEF_0228 NC_012751.1 238112 239665 D COG2194; sulfatase 238112..239665 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949833 YP_002923145.1 CDS HDEF_0230 NC_012751.1 239768 241045 R COG1253; CorC/HlyC transporter complement(239768..241045) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949834 YP_002923146.1 CDS HDEF_0229 NC_012751.1 240639 241082 D hypothetical protein 240639..241082 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949836 YP_002923147.1 CDS lpxK NC_012751.1 241438 242424 D COG1663; tetraacyldisaccharide 4'-kinase 241438..242424 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949835 YP_002923148.1 CDS HDEF_0232 NC_012751.1 242596 242832 R hypothetical protein complement(242596..242832) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949837 YP_002923149.1 CDS cspE_1 NC_012751.1 242906 243115 D affects expression of rpoS and uspA; COG1278; RNA chaperone, transcription antiterminator 242906..243115 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949838 YP_002923150.1 CDS HDEF_0234 NC_012751.1 243389 243568 D COG2835; hypothetical protein 243389..243568 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949839 YP_002923151.1 CDS kdsB NC_012751.1 243568 244314 D COG1212; CTP:CMP-3-deoxy-D-manno-octulosonate transferase 243568..244314 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949840 YP_002923152.1 CDS yifB NC_012751.1 244661 246181 D COG0606; nucleoside triphosphate hydrolase 244661..246181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949841 YP_002923153.1 CDS HDEF_0237 NC_012751.1 246507 246911 R ISHde1, transposase complement(246507..246911) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949842 YP_002923154.1 CDS HDEF_0238 NC_012751.1 246952 247329 R ISHde1, transposase complement(246952..247329) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949843 YP_002923155.1 CDS gspE NC_012751.1 247380 248432 R cotnains P-loop with nucleoside triphosphate hydrolase domain; COG2804; general secretory pathway protein complement(247380..248432) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949844 YP_002923156.1 CDS HDEF_0240 NC_012751.1 248429 248638 R hypothetical protein complement(248429..248638) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949845 YP_002923157.1 CDS gspD NC_012751.1 248635 250698 R COG1450; protein exporter, transport across outer membrane (General Secretory Pathway) complement(248635..250698) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949846 YP_002923158.1 CDS HDEF_0243 NC_012751.1 250767 251231 R weakly similar to general secretion pathway protein C; hypothetical protein complement(250767..251231) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949847 YP_002923161.1 CDS HDEF_0245 NC_012751.1 251640 251759 R hypothetical protein complement(251640..251759) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949848 YP_002923162.1 CDS HDEF_0246 NC_012751.1 252153 252515 R hypothetical protein complement(252153..252515) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949849 YP_002923163.1 CDS HDEF_0247 NC_012751.1 252652 252765 D hypothetical protein 252652..252765 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949850 YP_002923164.1 CDS HDEF_0248 NC_012751.1 252826 253446 R hypothetical protein complement(252826..253446) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949851 YP_002923165.1 CDS HDEF_0249 NC_012751.1 253474 253641 R hypothetical protein complement(253474..253641) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949852 YP_002923166.1 CDS HDEF_0251 NC_012751.1 254505 254870 D ISHde2, transposase 254505..254870 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949854 YP_002923167.1 CDS HDEF_0252 NC_012751.1 255011 255292 D ISHde2, transposase 255011..255292 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949855 YP_002923168.1 CDS HDEF_0254 NC_012751.1 255734 255997 R C terminal truncation; Mu-like prophage I protein complement(255734..255997) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949857 YP_002923169.1 CDS HDEF_0255 NC_012751.1 256132 256335 D hypothetical protein 256132..256335 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949858 YP_002923170.1 CDS HDEF_0256 NC_012751.1 256332 256655 D COG2337; addiction module toxin 256332..256655 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949859 YP_002923171.1 CDS HDEF_0257 NC_012751.1 256905 257153 D N and C terminal truncations; COG2369; Mu-like phage F protein 256905..257153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949860 YP_002923172.1 CDS HDEF_0258 NC_012751.1 257141 257572 R C terminal truncation; PilV type IV pilus minor pilin subunit, shufflon protein complement(257141..257572) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949861 YP_002923173.1 CDS HDEF_0259 NC_012751.1 257584 257685 R hypothetical protein complement(257584..257685) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949862 YP_002923174.1 CDS HDEF_0260 NC_012751.1 257725 257979 D COG4691; addiction module 257725..257979 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949863 YP_002923175.1 CDS HDEF_0261 NC_012751.1 257976 258419 D COG1487; hypothetical protein 257976..258419 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949864 YP_002923176.1 CDS HDEF_0262 NC_012751.1 258391 258981 R PilS2 type IV pilus biosynthesis protein complement(258391..258981) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949865 YP_002923177.1 CDS mobA_1 NC_012751.1 259327 261219 D MobA relaxase/mobilization protein 259327..261219 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949866 YP_002923178.1 CDS hupA_1 NC_012751.1 261350 261691 D COG0776; transcriptional regulator subunit alpha 261350..261691 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949867 YP_002923179.1 CDS HDEF_0266 NC_012751.1 264970 265707 R weakly similar to Sodalis hypothetical protein; hypothetical protein complement(264970..265707) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951939 YP_002923180.1 CDS gpmA NC_012751.1 265808 266557 R COG0588; phosphoglyceromutase 1 complement(265808..266557) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949870 YP_002923181.1 CDS HDEF_0268 NC_012751.1 266658 268721 R COG2274; ABC transporter complement(266658..268721) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949871 YP_002923182.1 CDS HDEF_0269 NC_012751.1 268919 269704 R COG0596; alpha/beta hydrolase fold protein complement(268919..269704) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949872 YP_002923183.1 CDS seqA NC_012751.1 269773 270303 D COG3057; negative modulator of replication initiation 269773..270303 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949873 YP_002923184.1 CDS nuoA NC_012751.1 270360 270812 D COG0838; NADH dehydrogenase I chain A 270360..270812 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949874 YP_002923185.1 CDS nuoB NC_012751.1 270818 271498 D COG0377; NADH dehydrogenase I chain B, binds FeS cluster N2 270818..271498 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949875 YP_002923186.1 CDS nuoC NC_012751.1 271506 273305 D NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 271506..273305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949876 YP_002923187.1 CDS nuoE NC_012751.1 273308 273832 D COG1905; NADH dehydrogenase I chain E 273308..273832 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949877 YP_002923188.1 CDS nuoF NC_012751.1 273829 275247 D shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 273829..275247 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949878 YP_002923189.1 CDS rtxB_1 NC_012751.1 275336 277450 R COG2274; ABC transporter ATP-binding protein/permease complement(275336..277450) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949879 YP_002923190.1 CDS rtxD NC_012751.1 277452 278828 R COG0845; ABC transporter complement(277452..278828) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949880 YP_002923191.1 CDS rtxB_2 NC_012751.1 278825 280957 R COG2274; ABC transporter ATP-binding protein/permease complement(278825..280957) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949881 YP_002923192.1 CDS bioA NC_012751.1 281504 282805 D COG0161; 7,8-diaminopelargonic acid synthetase, PLP-dependent 281504..282805 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949882 YP_002923193.1 CDS HDEF_0280 NC_012751.1 282897 285041 R type V secretory pathway, adhesin complement(282897..285041) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949883 YP_002923194.1 CDS HDEF_0281 NC_012751.1 285252 285821 R hypothetical protein complement(285252..285821) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949884 YP_002923195.1 CDS HDEF_0282 NC_012751.1 285885 286025 D hypothetical protein 285885..286025 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949885 YP_002923196.1 CDS HDEF_0283 NC_012751.1 286148 286876 R weakly similar to Providencia hypothetical protein; hypothetical protein complement(286148..286876) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949886 YP_002923197.1 CDS HDEF_0284 NC_012751.1 286989 287393 R ISHde1, transposase complement(286989..287393) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949887 YP_002923198.1 CDS HDEF_0285 NC_012751.1 287434 287811 R ISHde1, transposase complement(287434..287811) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949888 YP_002923199.1 CDS HDEF_0287 NC_012751.1 290769 291296 R hypothetical protein complement(290769..291296) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949890 YP_002923200.1 CDS HDEF_0288 NC_012751.1 291384 292040 R hypothetical protein complement(291384..292040) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949891 YP_002923201.1 CDS HDEF_0289 NC_012751.1 292403 293290 D COG0697; integral membrane protein 292403..293290 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949892 YP_002923202.1 CDS serC NC_012751.1 293367 294473 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 293367..294473 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949893 YP_002923203.1 CDS rhlE NC_012751.1 295959 297203 D COG0513; ATP-dependent RNA helicase 295959..297203 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949895 YP_002923204.1 CDS HDEF_0293 NC_012751.1 297289 298287 R hypothetical protein complement(297289..298287) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949896 YP_002923205.1 CDS purE NC_012751.1 299274 299798 D COG0041; N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) mutase 299274..299798 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949897 YP_002923206.1 CDS purK NC_012751.1 299795 300895 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 299795..300895 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949898 YP_002923207.1 CDS coaE NC_012751.1 301000 301620 D COG0237; dephospho-CoA kinase 301000..301620 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949899 YP_002923208.1 CDS HDEF_0297 NC_012751.1 302237 303919 D reverse transcriptase 302237..303919 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951940 YP_002923209.1 CDS HDEF_0298 NC_012751.1 304805 305467 D weakly similar to Yersinia hypothetical protein; hypothetical protein 304805..305467 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949901 YP_002923210.1 CDS HDEF_0299 NC_012751.1 305702 306259 R COG3108; hypothetical protein complement(305702..306259) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949902 YP_002923211.1 CDS HDEF_0300 NC_012751.1 306320 307063 R COG0566; rRNA methylase complement(306320..307063) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949903 YP_002923212.1 CDS rnr NC_012751.1 307056 309404 R 3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs; exoribonuclease R complement(307056..309404) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949904 YP_002923213.1 CDS purA NC_012751.1 309482 310792 R COG0104; adenylosuccinate synthetase complement(309482..310792) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949905 YP_002923214.1 CDS HDEF_0303 NC_012751.1 311050 311673 D COG3103; signal transduction protein 311050..311673 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949906 YP_002923215.1 CDS HDEF_0304 NC_012751.1 312259 314181 D hypothetical protein 312259..314181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949907 YP_002923216.1 CDS tyrP NC_012751.1 314349 315539 R COG0814; tyrosine-specific transport protein (HAAAP family) complement(314349..315539) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949908 YP_002923217.1 CDS nrdB NC_012751.1 315578 316708 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(315578..316708) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949909 YP_002923218.1 CDS nrdA NC_012751.1 316744 319032 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(316744..319032) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949910 YP_002923219.1 CDS tadG NC_012751.1 319341 320693 R tight adherance operon protein G complement(319341..320693) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949911 YP_002923220.1 CDS HDEF_0309 NC_012751.1 320727 321374 R hypothetical protein complement(320727..321374) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949912 YP_002923221.1 CDS tadE NC_012751.1 321349 321813 R tight adherance operon protein E complement(321349..321813) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949913 YP_002923222.1 CDS tadD NC_012751.1 321810 322574 R COG5010; tight adherance operon protein D complement(321810..322574) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949914 YP_002923223.1 CDS tadC NC_012751.1 322571 323398 R COG2064; tight adherance operon protein C complement(322571..323398) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949915 YP_002923224.1 CDS tadB NC_012751.1 323400 324302 R COG4965; tight adherance operon protein B complement(323400..324302) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949916 YP_002923225.1 CDS HDEF_0315 NC_012751.1 325588 326721 R COG4963; hypothetical protein complement(325588..326721) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949918 YP_002923226.1 CDS HDEF_0316 NC_012751.1 326726 327178 R hypothetical protein complement(326726..327178) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949919 YP_002923227.1 CDS rcpA NC_012751.1 327175 328554 R COG4964; tight adherance operon protein complement(327175..328554) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949920 YP_002923228.1 CDS HDEF_0318 NC_012751.1 328560 329387 R hypothetical protein complement(328560..329387) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949921 YP_002923229.1 CDS HDEF_0319 NC_012751.1 329440 329646 R N terminal truncation; COG4960; type IV prepilin peptidase family protein complement(329440..329646) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949922 YP_002923230.1 CDS HDEF_0320 NC_012751.1 330395 330508 R hypothetical protein complement(330395..330508) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949923 YP_002923231.1 CDS tolC NC_012751.1 330774 332153 D trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell; outer membrane channel protein 330774..332153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949924 YP_002923232.1 CDS crr NC_012751.1 332270 332782 R COG2190; PTS family enzyme IIA component complement(332270..332782) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949925 YP_002923233.1 CDS ptsI NC_012751.1 332919 334643 R Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase complement(332919..334643) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949926 YP_002923234.1 CDS ptsH NC_012751.1 334695 334952 R COG1925; PTS family Hpr protein, phosphohistidinoprotein-hexose phosphotransferase complement(334695..334952) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949927 YP_002923235.1 CDS deaD NC_012751.1 335124 336920 R COG0513; cold-shock DeaD box ATP-dependent RNA helicase complement(335124..336920) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949928 YP_002923236.1 CDS HDEF_0326 NC_012751.1 337058 337168 R hypothetical protein complement(337058..337168) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949929 YP_002923237.1 CDS pnp NC_012751.1 337424 339574 R COG1185; polynucleotide phosphorylase/polyadenylase complement(337424..339574) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949930 YP_002923238.1 CDS rpsO NC_012751.1 339732 340001 R COG0184; 30S ribosomal protein S15 complement(339732..340001) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949931 YP_002923239.1 CDS truB NC_012751.1 340251 341192 R COG0130; tRNA pseudouridine 5S synthase complement(340251..341192) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949932 YP_002923240.1 CDS rbfA NC_012751.1 341182 341595 R role in processing of 16S rRNA; COG0858; 30S ribosome-binding factor complement(341182..341595) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949933 YP_002923241.1 CDS infB NC_012751.1 341666 344314 R COG0532; protein chain initiation factor IF-2 complement(341666..344314) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949934 YP_002923242.1 CDS nusA NC_012751.1 344424 345908 R COG0195; transcription pausing; L factor complement(344424..345908) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949935 YP_002923243.1 CDS HDEF_0333 NC_012751.1 345932 346399 R COG0779; hypothetical protein complement(345932..346399) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949936 YP_002923244.1 CDS HDEF_0334 NC_012751.1 346482 346586 R hypothetical protein complement(346482..346586) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949937 YP_002923245.1 CDS secG NC_012751.1 346959 347288 R COG1314; preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway) complement(346959..347288) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949940 YP_002923246.1 CDS HDEF_0338 NC_012751.1 347628 348719 D COG0012; translation-associated GTPase 347628..348719 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949941 YP_002923247.1 CDS pabB NC_012751.1 348769 350151 R COG0147; aminodeoxychorismate synthase subunit I, component of p-aminobenzoate synthase multienzyme complex complement(348769..350151) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949942 YP_002923248.1 CDS pilD NC_012751.1 350203 351045 R COG1989; PilD type IV pilus leader peptidase complement(350203..351045) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949943 YP_002923249.1 CDS HDEF_0341 NC_012751.1 351045 351449 R lipoprotein complement(351045..351449) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949944 YP_002923250.1 CDS gspM NC_012751.1 351526 352008 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(351526..352008) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949945 YP_002923251.1 CDS gspL NC_012751.1 352019 353275 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(352019..353275) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949946 YP_002923252.1 CDS gspK NC_012751.1 353272 354222 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(353272..354222) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949947 YP_002923253.1 CDS HDEF_0345 NC_012751.1 354194 354343 R hypothetical protein complement(354194..354343) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949948 YP_002923254.1 CDS gspJ NC_012751.1 354347 354952 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(354347..354952) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949949 YP_002923255.1 CDS gspI NC_012751.1 354949 355302 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(354949..355302) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949950 YP_002923256.1 CDS gspH NC_012751.1 355346 355876 R protein exporter, transport across outer membrane (General Secretory Pathway) complement(355346..355876) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949951 YP_002923257.1 CDS gspG NC_012751.1 355877 356326 R COG2165; protein exporter, transport across outer membrane (General Secretory Pathway) complement(355877..356326) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949952 YP_002923258.1 CDS HDEF_0351 NC_012751.1 356814 358496 R reverse transcriptase complement(356814..358496) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951941 YP_002923259.1 CDS rne NC_012751.1 359335 362190 D COG1530; RNase E: endoribonuclease for rRNA processing and mRNA degradation 359335..362190 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949955 YP_002923260.1 CDS pyrC NC_012751.1 362150 363274 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 362150..363274 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949956 YP_002923261.1 CDS erpA NC_012751.1 363332 363676 D COG0316; hypothetical protein 363332..363676 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949957 YP_002923262.1 CDS obgE NC_012751.1 363708 364796 R COG0536; GTP-binding protein associated with DNA replication of some extrachromosomal elements complement(363708..364796) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949958 YP_002923263.1 CDS mltC NC_012751.1 364800 365879 R Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C complement(364800..365879) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949959 YP_002923264.1 CDS HDEF_0357 NC_012751.1 365912 366184 R COG2924; hypothetical protein complement(365912..366184) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949960 YP_002923265.1 CDS mutY NC_012751.1 366177 367271 R COG1194; adenine DNA glycosylase complement(366177..367271) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949961 YP_002923266.1 CDS trmI NC_012751.1 367397 368122 D COG0220; tRNA (m7G46) methyltransferase, SAM-dependent 367397..368122 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949962 YP_002923267.1 CDS HDEF_0361 NC_012751.1 368330 369202 R COG0313; tetrapyrrole methylase complement(368330..369202) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949964 YP_002923268.1 CDS HDEF_0362 NC_012751.1 369206 369325 R hypothetical protein complement(369206..369325) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949965 YP_002923269.1 CDS HDEF_0363 NC_012751.1 369326 370663 D COG4942; peptidase, M23 family domain protein 369326..370663 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949966 YP_002923270.1 CDS HDEF_0364 NC_012751.1 370768 371220 D COG2707; hypothetical protein 370768..371220 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949967 YP_002923271.1 CDS gltX NC_012751.1 373416 374819 R COG0008; glutamate tRNA synthetase, catalytic subunit complement(373416..374819) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949969 YP_002923272.1 CDS fis NC_012751.1 374901 375200 R COG2901; DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replication complement(374901..375200) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949970 YP_002923273.1 CDS HDEF_0368 NC_012751.1 375313 375447 D hypothetical protein 375313..375447 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949971 YP_002923274.1 CDS rpsT NC_012751.1 375404 375733 D COG0268; 30S ribosomal subunit protein S20 375404..375733 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949972 YP_002923275.1 CDS nhaA NC_012751.1 375907 377073 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(375907..377073) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949973 YP_002923276.1 CDS dnaJ NC_012751.1 377152 378267 R COG0484; heat shock protein 40 complement(377152..378267) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949974 YP_002923277.1 CDS dnaK NC_012751.1 378392 380299 R COG0443; chaperone Hsp70 in DNA biosynthesis/cell division complement(378392..380299) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949975 YP_002923278.1 CDS ppa NC_012751.1 380377 380937 R COG0221; inorganic pyrophosphatase complement(380377..380937) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949976 YP_002923279.1 CDS sthA NC_012751.1 381050 382456 R catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase complement(381050..382456) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949977 YP_002923280.1 CDS fabR NC_012751.1 382641 383255 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 382641..383255 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949978 YP_002923281.1 CDS glnH NC_012751.1 383760 384503 D similar to periplasmic-binding component of ABC transporters; glutamine ABC transporter periplasmic protein 383760..384503 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949979 YP_002923282.1 CDS glnP NC_012751.1 384538 385194 D similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine; glutamine ABC transporter permease 384538..385194 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949980 YP_002923283.1 CDS glnQ NC_012751.1 385191 385916 D similar to ATP-binding component of ABC transporters; glutamine ABC transporter ATP-binding protein 385191..385916 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949981 YP_002923284.1 CDS HDEF_0379 NC_012751.1 385944 386066 D hypothetical protein 385944..386066 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949982 YP_002923285.1 CDS HDEF_0381 NC_012751.1 386275 386595 D N and C terminal truncations; transposase 386275..386595 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949984 YP_002923286.1 CDS pckA NC_012751.1 386842 388461 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 386842..388461 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949985 YP_002923287.1 CDS HDEF_0383 NC_012751.1 388549 388839 D hypothetical protein 388549..388839 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949986 YP_002923288.1 CDS rpmE NC_012751.1 388746 388967 R COG0254; 50S ribosomal subunit protein L31 complement(388746..388967) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949987 YP_002923289.1 CDS HDEF_0385 NC_012751.1 389467 390276 D COG2912; transcriptional regulator 389467..390276 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949988 YP_002923290.1 CDS kdsA NC_012751.1 390285 391118 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 390285..391118 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949989 YP_002923291.1 CDS metN NC_012751.1 391397 392431 D COG1135; D- and L-methionine transport protein (ABC superfamily, atp_bind) 391397..392431 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949990 YP_002923292.1 CDS metI NC_012751.1 392424 393077 D part of the MetNIQ methionine uptake system; DL-methionine transporter permease subunit 392424..393077 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949991 YP_002923293.1 CDS metQ NC_012751.1 393147 393971 D COG1464; D-methionine transport protein (ABC superfamily, peri_bind) 393147..393971 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949992 YP_002923294.1 CDS HDEF_0390 NC_012751.1 393977 394069 R hypothetical protein complement(393977..394069) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949993 YP_002923295.1 CDS proS NC_012751.1 394110 395849 D COG0442; proline tRNA synthetase 394110..395849 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949994 YP_002923296.1 CDS HDEF_0392 NC_012751.1 395858 396898 D COG0463; glycosyltransferase group 2 395858..396898 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949995 YP_002923297.1 CDS relA NC_012751.1 396914 399133 R (p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP; GDP/GTP pyrophosphokinase complement(396914..399133) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949996 YP_002923298.1 CDS HDEF_0394 NC_012751.1 399165 399305 D hypothetical protein 399165..399305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949997 YP_002923299.1 CDS HDEF_0395 NC_012751.1 399234 399374 R hypothetical protein complement(399234..399374) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949998 YP_002923300.1 CDS HDEF_0396 NC_012751.1 399375 399881 R COG0590; CMP/dCMP deaminase; zinc-binding complement(399375..399881) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949999 YP_002923301.1 CDS HDEF_0397 NC_012751.1 399970 400551 R regulatory protein complement(399970..400551) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950000 YP_002923302.1 CDS yopH NC_012751.1 400835 402112 D tyrosine-protein phosphatase 400835..402112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950001 YP_002923303.1 CDS HDEF_0400 NC_012751.1 402996 404618 D metalloprotease 402996..404618 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950003 YP_002923304.1 CDS proY NC_012751.1 404685 406049 R cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation; proline-specific permease complement(404685..406049) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950004 YP_002923305.1 CDS folE NC_012751.1 406056 406718 R COG0302; GTP cyclohydrolase I complement(406056..406718) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950005 YP_002923306.1 CDS HDEF_0403 NC_012751.1 406799 408391 R COG0488; ABC transporter ATP-binding protein complement(406799..408391) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950006 YP_002923307.1 CDS HDEF_0404 NC_012751.1 408733 409290 R hypothetical protein complement(408733..409290) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950007 YP_002923308.1 CDS HDEF_0405 NC_012751.1 409333 411651 R hypothetical protein complement(409333..411651) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950008 YP_002923309.1 CDS HDEF_0408 NC_012751.1 412026 412712 R hypothetical protein complement(412026..412712) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950010 YP_002923310.1 CDS HDEF_0407 NC_012751.1 412672 412881 D hypothetical protein 412672..412881 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950012 YP_002923311.1 CDS HDEF_0409 NC_012751.1 413042 413407 R N terminal truncation; phage lysozyme complement(413042..413407) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950011 YP_002923312.1 CDS HDEF_0410 NC_012751.1 413492 413830 R phage holin complement(413492..413830) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950013 YP_002923313.1 CDS HDEF_0411 NC_012751.1 414463 415686 R phosphoesterase complement(414463..415686) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950014 YP_002923314.1 CDS HDEF_0412 NC_012751.1 415853 416230 D ISHde1, transposase 415853..416230 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950015 YP_002923315.1 CDS HDEF_0413 NC_012751.1 416271 416675 D ISHde1, transposase 416271..416675 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950016 YP_002923316.1 CDS virD4 NC_012751.1 416695 417393 R C terminal truncation; VirD4 conjugal transfer protein complement(416695..417393) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950017 YP_002923317.1 CDS HDEF_0415 NC_012751.1 417390 417734 R hypothetical protein complement(417390..417734) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950018 YP_002923318.1 CDS virB11 NC_012751.1 417751 418776 R COG0630; VirB11 conjugal transfer protein complement(417751..418776) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950019 YP_002923319.1 CDS virB10 NC_012751.1 418766 419431 R N terminal truncation; COG2948; VirB10 conjugal transfer protein complement(418766..419431) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950020 YP_002923320.1 CDS HDEF_0418 NC_012751.1 419428 420087 R hypothetical protein complement(419428..420087) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950021 YP_002923321.1 CDS virB9 NC_012751.1 420074 420874 R VirB9 conjugal transfer protein complement(420074..420874) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950022 YP_002923322.1 CDS mobB_1 NC_012751.1 420878 423994 R MobB relaxase/mobilization protein complement(420878..423994) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950023 YP_002923323.1 CDS mobC_1 NC_012751.1 423984 424307 R MobC relaxase/mobilization protein complement(423984..424307) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950024 YP_002923324.1 CDS HDEF_0422 NC_012751.1 424337 424453 D hypothetical protein 424337..424453 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950025 YP_002923325.1 CDS HDEF_0423 NC_012751.1 424654 425064 D hypothetical protein 424654..425064 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950026 YP_002923326.1 CDS stbB_1 NC_012751.1 425066 425776 D plasmid stability protein StbB 425066..425776 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950027 YP_002923327.1 CDS HDEF_0425 NC_012751.1 425789 426388 D hypothetical protein 425789..426388 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950028 YP_002923328.1 CDS HDEF_0426 NC_012751.1 426552 426803 D addiction module antitoxin 426552..426803 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950029 YP_002923329.1 CDS HDEF_0427 NC_012751.1 426803 427222 D COG1487; hypothetical protein 426803..427222 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950030 YP_002923330.1 CDS virB6 NC_012751.1 427223 428173 R VirB6 conjugal transfer protein complement(427223..428173) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950031 YP_002923331.1 CDS HDEF_0429 NC_012751.1 428196 428552 R hypothetical protein complement(428196..428552) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950032 YP_002923332.1 CDS vagD NC_012751.1 428549 428965 R COG1487; hypothetical protein complement(428549..428965) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950033 YP_002923333.1 CDS vagC NC_012751.1 428977 429207 R addiction module complement(428977..429207) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950034 YP_002923334.1 CDS virB5 NC_012751.1 429281 429967 R VirB5 conjugal transfer protein complement(429281..429967) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950035 YP_002923335.1 CDS virB4 NC_012751.1 429964 431067 R N terminal truncation; VirB4 conjugal transfer protein complement(429964..431067) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950036 YP_002923336.1 CDS HDEF_0434 NC_012751.1 431482 431715 R ISHde5, transposase complement(431482..431715) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950037 YP_002923337.1 CDS HDEF_0435 NC_012751.1 431854 432213 R ISHde5, transposase complement(431854..432213) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950038 YP_002923338.1 CDS HDEF_0436 NC_012751.1 432279 432431 R hypothetical protein complement(432279..432431) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950039 YP_002923339.1 CDS rtxA_02 NC_012751.1 432727 435045 R Possible N terminal truncation, paired with HDEF_0438; RTX-family protein-2 complement(432727..435045) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950040 YP_002923340.1 CDS rtxA_01 NC_012751.1 435055 438645 R Possible C terminal truncation, paired with HDEF_0437; RTX-family protein-1 complement(435055..438645) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950041 YP_002923341.1 CDS rtxA_03 NC_012751.1 438843 444218 D RTX-family protein-3 438843..444218 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950042 YP_002923342.1 CDS HDEF_0440 NC_012751.1 444354 444569 D hypothetical protein 444354..444569 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950043 YP_002923343.1 CDS HDEF_0441 NC_012751.1 445115 446797 D reverse transcriptase 445115..446797 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951942 YP_002923344.1 CDS rluC NC_012751.1 447145 447990 D COG0564; 23S rRNA pseudouridylate synthase 447145..447990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950045 YP_002923345.1 CDS HDEF_0443 NC_012751.1 448060 448590 D COG1399; hypothetical protein 448060..448590 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950046 YP_002923346.1 CDS rpmF NC_012751.1 448607 448777 D COG0333; 50S ribosomal subunit protein L32 448607..448777 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950047 YP_002923347.1 CDS fabH NC_012751.1 448997 449941 D COG0332; 3-oxoacyl-ACP synthase III 448997..449941 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950048 YP_002923348.1 CDS fabD NC_012751.1 449961 450935 D COG0331; malonyl CoA-ACP transacylase 449961..450935 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950049 YP_002923349.1 CDS fabG NC_012751.1 450925 451662 D COG1028; 3-oxoacyl-ACP reductase 450925..451662 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950050 YP_002923350.1 CDS acpP NC_012751.1 452028 452279 D COG0236; acyl carrier protein 452028..452279 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950051 YP_002923351.1 CDS fabF NC_012751.1 452344 453585 D COG0304; 3-oxoacyl-ACP synthase II 452344..453585 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950052 YP_002923352.1 CDS HDEF_0450 NC_012751.1 453788 454813 D COG1559; aminodeoxychorismate lyase 453788..454813 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950053 YP_002923353.1 CDS tmk NC_012751.1 454803 455435 D COG0125; thymidylate kinase 454803..455435 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950054 YP_002923354.1 CDS holB NC_012751.1 455440 456423 D COG0470; DNA polymerase III, delta prime subunit 455440..456423 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950055 YP_002923355.1 CDS HDEF_0453 NC_012751.1 456453 457250 D COG0084; metallodependent hydrolase 456453..457250 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950056 YP_002923356.1 CDS ptsG NC_012751.1 457489 458922 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucose-specific transporter subunits IIBC 457489..458922 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950057 YP_002923357.1 CDS ung NC_012751.1 459178 459855 R COG0692; uracil-DNA-glycosylase complement(459178..459855) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950058 YP_002923358.1 CDS srmB NC_012751.1 459821 461185 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(459821..461185) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950059 YP_002923359.1 CDS HDEF_0457 NC_012751.1 461488 462198 R COG0670; hypothetical protein complement(461488..462198) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950060 YP_002923360.1 CDS HDEF_0458 NC_012751.1 462421 463422 D COG0533; O-sialoglycoprotein endopeptidase 462421..463422 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950061 YP_002923361.1 CDS aroC NC_012751.1 463499 464563 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(463499..464563) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950062 YP_002923362.1 CDS mdh NC_012751.1 464827 465765 D oxidizes malate to oxaloacetate; malate dehydrogenase 464827..465765 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950063 YP_002923363.1 CDS clpS NC_012751.1 465870 466187 D COG2127; regulatory protein for ClpA substrate specificity 465870..466187 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950064 YP_002923364.1 CDS clpA NC_012751.1 466215 468503 D COG0542; ATP-dependent specificity subunit of clpA-clpP serine protease 466215..468503 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950065 YP_002923365.1 CDS infA NC_012751.1 468599 468817 R COG0361; protein chain initiation factor IF-1 complement(468599..468817) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950066 YP_002923366.1 CDS HDEF_0464 NC_012751.1 468902 469057 R hypothetical protein complement(468902..469057) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950067 YP_002923367.1 CDS HDEF_0465 NC_012751.1 469129 469581 D COG2867; polyketide cyclase/lipid transport protein 469129..469581 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950068 YP_002923368.1 CDS rplY NC_012751.1 469702 470001 D COG1825; 50S ribosomal subunit protein L25 469702..470001 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950069 YP_002923369.1 CDS folB NC_012751.1 469963 470361 R COG1539; dihydroneopterin aldolase, also has dihydroneopterin triphosphate 2'-epimerase activity complement(469963..470361) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950070 YP_002923370.1 CDS HDEF_0468 NC_012751.1 470371 470484 R hypothetical protein complement(470371..470484) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950071 YP_002923371.1 CDS HDEF_0469 NC_012751.1 471070 472419 D hypothetical protein 471070..472419 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950072 YP_002923372.1 CDS HDEF_0470 NC_012751.1 472537 472698 D hypothetical protein 472537..472698 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950073 YP_002923373.1 CDS HDEF_0471 NC_012751.1 472690 473211 R hypothetical protein complement(472690..473211) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950074 YP_002923374.1 CDS HDEF_0472 NC_012751.1 473235 474368 D COG0477; drug resistance transporter major facilitator superfamily 473235..474368 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950075 YP_002923375.1 CDS uspA NC_012751.1 474410 474859 R possibly linked to resistance to DNA-damage and respiratory uncoupling; COG0589; universal stress protein A complement(474410..474859) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950076 YP_002923376.1 CDS murI NC_012751.1 474943 475758 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(474943..475758) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950077 YP_002923377.1 CDS HDEF_0475 NC_012751.1 475829 476011 R hypothetical protein complement(475829..476011) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950078 YP_002923378.1 CDS orn NC_012751.1 476099 476656 R COG1949; oligoribonuclease complement(476099..476656) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950079 YP_002923379.1 CDS HDEF_0477 NC_012751.1 476766 477824 D COG1162; GTP-binding protein 476766..477824 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950080 YP_002923380.1 CDS psd NC_012751.1 477840 478706 D COG0688; phosphatidylserine decarboxylase 477840..478706 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950081 YP_002923381.1 CDS HDEF_0479 NC_012751.1 478997 482329 D COG3264; hypothetical protein 478997..482329 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950082 YP_002923382.1 CDS lysS NC_012751.1 482387 483364 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(482387..483364) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950083 YP_002923383.1 CDS pilT_1 NC_012751.1 483556 484557 R COG2805; PilT-like ATPase type IV pilus biogenesis protein complement(483556..484557) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950084 YP_002923384.1 CDS HDEF_0482 NC_012751.1 484578 485297 D COG0325; alanine racemase 484578..485297 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950085 YP_002923385.1 CDS proC NC_012751.1 485284 486111 D COG0345; pyrroline-5-carboxylate reductase, NAD(P)-binding 485284..486111 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950086 YP_002923386.1 CDS ftn NC_012751.1 486533 487045 R COG1528; cytoplasmic ferritin (iron storage protein) complement(486533..487045) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950087 YP_002923387.1 CDS HDEF_0485 NC_012751.1 487117 487278 D hypothetical protein 487117..487278 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950088 YP_002923388.1 CDS HDEF_0486 NC_012751.1 487164 488660 R COG5339; hypothetical protein complement(487164..488660) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950089 YP_002923389.1 CDS manA NC_012751.1 488699 489880 R COG1482; mannose-6-phosphate isomerase complement(488699..489880) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950090 YP_002923390.1 CDS clpB NC_012751.1 490036 492609 D part of multi-chaperone system with DnaK, DnaJ, and GrpE; COG0542; ATP-dependent protease, Hsp 100 490036..492609 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950091 YP_002923391.1 CDS HDEF_0490 NC_012751.1 492759 492899 R hypothetical protein complement(492759..492899) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950092 YP_002923392.1 CDS HDEF_0489 NC_012751.1 492859 493362 D COG0802; P-loop hydrolase 492859..493362 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950094 YP_002923393.1 CDS amiB NC_012751.1 493359 494387 D COG0860; N-acetylmuramoyl-l-alanine amidase II, a murein hydrolase 493359..494387 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950093 YP_002923394.1 CDS mutL_1 NC_012751.1 494435 496216 D stimulates binding of Vsr and MutS to heteroduplex DNA; COG0323; methyl-directed mismatch repair protein 494435..496216 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950095 YP_002923395.1 CDS miaA NC_012751.1 496203 497144 D COG0324; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 496203..497144 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950096 YP_002923396.1 CDS hfq NC_012751.1 497297 497578 D RNA binding, mRNA degradation, stimulates poly(A) polymerase I; COG1923; host factor I for bacteriophage Q beta replication 497297..497578 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950097 YP_002923397.1 CDS HDEF_0495 NC_012751.1 497649 497804 R hypothetical protein complement(497649..497804) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950098 YP_002923398.1 CDS HDEF_0496 NC_012751.1 497899 498048 R hypothetical protein complement(497899..498048) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950099 YP_002923399.1 CDS hflK NC_012751.1 498124 499356 D with HflC, part of modulator for protease specific for FtsH phage lambda cII repressor; COG0330; HflK 498124..499356 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950100 YP_002923400.1 CDS hflC NC_012751.1 499362 500351 D with HflK, part of modulator for protease specific for FtsH phage lambda cII repressor; with HflK inhibits proteolysis of lambda cII protein by FtsH; FtsH protease regulator HflC 499362..500351 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950101 YP_002923401.1 CDS rimI NC_012751.1 500402 500809 R COG0456; modification of 30S ribosomal subunit protein S18; acetylation of N-terminal alanine complement(500402..500809) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950102 YP_002923402.1 CDS holD NC_012751.1 500793 501227 R COG3050; DNA polymerase III, psi subunit complement(500793..501227) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950103 YP_002923403.1 CDS HDEF_0501 NC_012751.1 501383 501490 D hypothetical protein 501383..501490 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950104 YP_002923404.1 CDS nuoN NC_012751.1 501562 503055 D COG1007; NADH dehydrogenase I chain N, membrane subunit 501562..503055 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950105 YP_002923405.1 CDS HDEF_0503 NC_012751.1 503161 503394 R hypothetical protein complement(503161..503394) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950106 YP_002923406.1 CDS priA NC_012751.1 503688 505892 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 503688..505892 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950107 YP_002923407.1 CDS mscL NC_012751.1 506072 506524 D COG1970; mechanosensitive channel 506072..506524 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950108 YP_002923408.1 CDS metK NC_012751.1 507011 508168 D COG0192; methionine adenosyltransferase 1 (AdoMet synthetase) 507011..508168 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950109 YP_002923409.1 CDS HDEF_0507 NC_012751.1 508200 508295 D hypothetical protein 508200..508295 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950110 YP_002923410.1 CDS pyrE NC_012751.1 508290 508946 R COG0461; orotate phosphoribosyltransferase complement(508290..508946) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950111 YP_002923411.1 CDS rph NC_012751.1 508981 509706 R COG0689; RNase PH complement(508981..509706) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950112 YP_002923412.1 CDS HDEF_0510 NC_012751.1 509843 510706 D COG1561; hypothetical protein 509843..510706 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950113 YP_002923413.1 CDS speD NC_012751.1 510800 511594 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(510800..511594) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950114 YP_002923414.1 CDS speE NC_012751.1 511668 512540 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(511668..512540) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950115 YP_002923415.1 CDS HDEF_0513 NC_012751.1 512705 513394 D COG1214; peptidase, M22 family 512705..513394 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950116 YP_002923416.1 CDS HDEF_0514 NC_012751.1 513398 514996 D C terminal truncation; COG1649; glycosyl hydrolase enzymes, family DUF187 513398..514996 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950117 YP_002923417.1 CDS rnd NC_012751.1 514989 516152 D COG0349; ribonuclease D 514989..516152 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950118 YP_002923418.1 CDS rfaQ NC_012751.1 516181 517269 R modification of heptose region of core; COG0859; lipopolysaccharide core biosynthesis complement(516181..517269) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950119 YP_002923419.1 CDS sirA NC_012751.1 517372 517623 D COG0425; conserved protein required for cell growth 517372..517623 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950120 YP_002923420.1 CDS HDEF_0518 NC_012751.1 517810 517983 D hypothetical protein 517810..517983 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950121 YP_002923421.1 CDS HDEF_0519 NC_012751.1 518032 518250 D hypothetical protein 518032..518250 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950122 YP_002923422.1 CDS HDEF_0520 NC_012751.1 518508 518738 D hypothetical protein 518508..518738 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950123 YP_002923423.1 CDS HDEF_0521 NC_012751.1 518997 519125 R hypothetical protein complement(518997..519125) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950124 YP_002923424.1 CDS HDEF_0522 NC_012751.1 519704 519811 D hypothetical protein 519704..519811 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950125 YP_002923425.1 CDS HDEF_0523 NC_012751.1 519759 519869 D hypothetical protein 519759..519869 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950126 YP_002923426.1 CDS HDEF_0524 NC_012751.1 519851 521224 R COG0477; transporter major facilitator superfamily complement(519851..521224) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950127 YP_002923427.1 CDS HDEF_0525 NC_012751.1 521464 522927 D COG4783; peptidase, M24 family 521464..522927 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950128 YP_002923428.1 CDS nadB NC_012751.1 523009 524619 R COG0029; quinolinate synthetase, B protein (L-aspartate oxidase) complement(523009..524619) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950129 YP_002923429.1 CDS rpoE NC_012751.1 524784 525359 D COG1595; RNA polymerase, sigma 24 (sigma E) factor 524784..525359 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950130 YP_002923430.1 CDS rseA NC_012751.1 525385 525990 D COG3073; anti sigma E (sigma 24) factor, negative regulator 525385..525990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950131 YP_002923431.1 CDS rseB NC_012751.1 526014 526967 D COG3026; anti sigma E (sigma 24) factor, negative regulator 526014..526967 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950132 YP_002923432.1 CDS lepA NC_012751.1 526964 528763 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 526964..528763 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950133 YP_002923433.1 CDS lepB NC_012751.1 528805 529755 D catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins; signal peptidase I 528805..529755 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950134 YP_002923434.1 CDS rnc NC_012751.1 529835 530515 D COG0571; RNase III, ds RNA 529835..530515 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950135 YP_002923435.1 CDS era NC_012751.1 530512 531459 D COG1159; GTPase believed to be involved in coordination of cell cycle, energy metabolism, cell division 530512..531459 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950136 YP_002923436.1 CDS recO NC_012751.1 531472 532176 D targets RecA to ssDNA-dsDNA junction; COG1381; gap repair protein, part of RecFOR complex 531472..532176 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950137 YP_002923437.1 CDS mscS NC_012751.1 532274 533125 D COG0668; mechanosensitive channel protein (MscS family) 532274..533125 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950138 YP_002923438.1 CDS fepE NC_012751.1 533888 534814 R COG3765; regulator of length of O-antigen component of lipopolysaccharide chains complement(533888..534814) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950140 YP_002923439.1 CDS ugd NC_012751.1 534870 536036 R COG1004; UDP-glucose 6-dehydrogenase complement(534870..536036) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950141 YP_002923440.1 CDS HDEF_0539 NC_012751.1 536225 538228 R with MacA is involved in the export of macrolide; macrolide transporter ATP-binding /permease complement(536225..538228) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950142 YP_002923441.1 CDS HDEF_0540 NC_012751.1 538247 539929 R reverse transcriptase complement(538247..539929) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951943 YP_002923442.1 CDS HDEF_0541 NC_012751.1 540531 541667 R confers macrolide resistance via active drug efflux; macrolide transporter subunit MacA complement(540531..541667) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950144 YP_002923443.1 CDS iscS NC_012751.1 541710 542870 R COG1104; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent complement(541710..542870) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950145 YP_002923444.1 CDS mutT NC_012751.1 542914 543315 R COG0494; 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP complement(542914..543315) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950146 YP_002923445.1 CDS HDEF_0544 NC_012751.1 543395 543490 R hypothetical protein complement(543395..543490) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950147 YP_002923446.1 CDS nfuA NC_012751.1 543541 544116 R cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein complement(543541..544116) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950148 YP_002923447.1 CDS gntX NC_012751.1 544170 544865 R involved in high-affinity gluconate transport; gluconate periplasmic binding protein complement(544170..544865) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950149 YP_002923448.1 CDS bioH NC_012751.1 544908 545687 D COG0596; alpha/beta-hydrolase 544908..545687 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950150 YP_002923449.1 CDS rluD NC_012751.1 547011 547988 R COG0564; (pseudouridines 1911, 1915, 1917 in 23S RNA); pseudouridine synthase complement(547011..547988) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950156 YP_002923450.1 CDS yfiO NC_012751.1 548120 548848 D with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline; outer membrane protein assembly complex subunit YfiO 548120..548848 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950157 YP_002923451.1 CDS raiA NC_012751.1 548888 549241 D COG1544; ribosome associated factor, stabilizes ribosomes against dissociation 548888..549241 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950158 YP_002923452.1 CDS mnmA NC_012751.1 549297 550391 D COG0482; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 549297..550391 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950159 YP_002923453.1 CDS purB NC_012751.1 550503 551879 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 550503..551879 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950160 YP_002923454.1 CDS HDEF_0559 NC_012751.1 553484 553915 R hypothetical protein complement(553484..553915) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950162 YP_002923455.1 CDS HDEF_0560 NC_012751.1 553896 554162 R COG2938; hypothetical protein complement(553896..554162) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950163 YP_002923456.1 CDS HDEF_0561 NC_012751.1 554399 554638 R COG3074; hypothetical protein complement(554399..554638) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950164 YP_002923457.1 CDS HDEF_0562 NC_012751.1 555068 556147 R hypothetical protein complement(555068..556147) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950165 YP_002923458.1 CDS HDEF_0563 NC_012751.1 556156 556698 R hypothetical protein complement(556156..556698) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950166 YP_002923459.1 CDS HDEF_0564 NC_012751.1 556655 557359 R hypothetical protein complement(556655..557359) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950167 YP_002923460.1 CDS HDEF_0565 NC_012751.1 557331 558011 R hypothetical protein complement(557331..558011) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950168 YP_002923461.1 CDS HDEF_0567 NC_012751.1 560315 560494 R hypothetical protein complement(560315..560494) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950170 YP_002923462.1 CDS HDEF_0568 NC_012751.1 560478 560990 R hypothetical protein complement(560478..560990) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950171 YP_002923463.1 CDS HDEF_0569 NC_012751.1 561538 561666 R hypothetical protein complement(561538..561666) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950172 YP_002923464.1 CDS HDEF_0570 NC_012751.1 561704 562513 D hypothetical protein 561704..562513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950173 YP_002923465.1 CDS int_1 NC_012751.1 563112 563744 R N terminal truncation; COG0582; phage integrase complement(563112..563744) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950176 YP_002923466.1 CDS HDEF_0574 NC_012751.1 563936 564256 D similar to APSE H protein; hypothetical protein 563936..564256 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950177 YP_002923467.1 CDS HDEF_0575 NC_012751.1 564265 564699 R single-strand DNA-binding protein complement(564265..564699) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950178 YP_002923468.1 CDS HDEF_0577 NC_012751.1 565320 565607 R hypothetical protein complement(565320..565607) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950180 YP_002923469.1 CDS HDEF_0578 NC_012751.1 565657 565854 R hypothetical protein complement(565657..565854) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950181 YP_002923470.1 CDS C_1 NC_012751.1 566557 567177 D phage repressor protein 566557..567177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950183 YP_002923471.1 CDS HDEF_0581 NC_012751.1 567221 567961 R N terminal truncation; COG5464; transposase complement(567221..567961) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950184 YP_002923472.1 CDS HDEF_0582 NC_012751.1 567980 569662 R reverse transcriptase complement(567980..569662) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951944 YP_002923473.1 CDS rpsR NC_012751.1 570208 570465 R COG0238; 30S ribosomal subunit protein S18 complement(570208..570465) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950186 YP_002923474.1 CDS priB NC_012751.1 570470 570787 R COG2965; primosomal replication protein N complement(570470..570787) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950187 YP_002923475.1 CDS rpsF NC_012751.1 570784 571215 R COG0360; 30S ribosomal subunit protein S6 complement(570784..571215) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950188 YP_002923476.1 CDS rnhB NC_012751.1 571388 571990 R COG0164; RNAse HII complement(571388..571990) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950189 YP_002923477.1 CDS lpxB NC_012751.1 571990 573135 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(571990..573135) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950190 YP_002923478.1 CDS lpxA NC_012751.1 573137 573940 R COG1043; UDP-N-acetylglucosamine acetyltransferase complement(573137..573940) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950191 YP_002923479.1 CDS fabZ NC_012751.1 573944 574456 R COG0764; (3R)-hydroxymyristoyl-ACP dehydratase complement(573944..574456) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950192 YP_002923480.1 CDS lpxD NC_012751.1 574618 575655 R COG1044; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase complement(574618..575655) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950193 YP_002923481.1 CDS hlpA NC_012751.1 575661 576176 R COG2825; periplasmic chaperone complement(575661..576176) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950194 YP_002923482.1 CDS HDEF_0592 NC_012751.1 576205 578598 R part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins; outer membrane protein assembly factor YaeT complement(576205..578598) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950195 YP_002923483.1 CDS rseP NC_012751.1 578634 580010 R COG0750; zinc metallopeptidase complement(578634..580010) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950196 YP_002923484.1 CDS cdsA NC_012751.1 580067 580921 R COG0575; CDP-diglyceride synthase complement(580067..580921) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950197 YP_002923485.1 CDS ispU NC_012751.1 580931 581689 R COG0020; UDP pyrophosphate synthetase complement(580931..581689) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950198 YP_002923486.1 CDS HDEF_0596 NC_012751.1 582117 582212 D hypothetical protein 582117..582212 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950199 YP_002923487.1 CDS HDEF_0597 NC_012751.1 582214 582360 D hypothetical protein 582214..582360 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950200 YP_002923488.1 CDS aguA NC_012751.1 582969 584060 R catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase complement(582969..584060) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950202 YP_002923489.1 CDS aguB NC_012751.1 584060 584947 R COG0388; N-carbamoylputrescine amidohydrolase complement(584060..584947) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950203 YP_002923490.1 CDS HDEF_0601 NC_012751.1 584991 585428 R COG0816; Holliday junction resolvase-like protein complement(584991..585428) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950204 YP_002923491.1 CDS HDEF_0602 NC_012751.1 585428 585985 R COG1678; hypothetical protein complement(585428..585985) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950205 YP_002923492.1 CDS gshB NC_012751.1 586086 587069 R COG0189; glutathione synthetase complement(586086..587069) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950206 YP_002923493.1 CDS rsmE NC_012751.1 587086 587817 R COG1385; 16S rRNA methyltransferase complement(587086..587817) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950207 YP_002923494.1 CDS thiQ NC_012751.1 587834 588538 R with TbpA and ThiP is part of the thiamine and TPP transport system; thiamine transporter ATP-binding subunit complement(587834..588538) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950208 YP_002923495.1 CDS thiP NC_012751.1 588525 590153 R permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein complement(588525..590153) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950209 YP_002923496.1 CDS tbpA NC_012751.1 590129 591178 R COG4143; thiamin transporter subunit complement(590129..591178) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950210 YP_002923497.1 CDS hofC NC_012751.1 591197 592414 R COG1459; type IV pilin biogenesis protein complement(591197..592414) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950211 YP_002923498.1 CDS hofB NC_012751.1 592429 594018 R COG2804; hypothetical protein complement(592429..594018) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950212 YP_002923499.1 CDS pilA NC_012751.1 594018 594458 R COG4969; PilA type IV pilus major pilin subunit complement(594018..594458) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950213 YP_002923500.1 CDS glyQ NC_012751.1 594851 595765 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 594851..595765 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950214 YP_002923501.1 CDS glyS NC_012751.1 595789 597858 D COG0751; glycine tRNA synthetase, beta subunit 595789..597858 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950215 YP_002923502.1 CDS HDEF_0613 NC_012751.1 597954 598049 R hypothetical protein complement(597954..598049) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950216 YP_002923503.1 CDS HDEF_0614 NC_012751.1 598535 599410 D hypothetical protein 598535..599410 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950217 YP_002923504.1 CDS HDEF_0615 NC_012751.1 599592 602768 D Possible C terminal truncation; hypothetical protein 599592..602768 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950218 YP_002923505.1 CDS HDEF_0616 NC_012751.1 602788 603192 R ISHde1, transposase complement(602788..603192) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950219 YP_002923506.1 CDS HDEF_0617 NC_012751.1 603233 603610 R ISHde1, transposase complement(603233..603610) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950220 YP_002923507.1 CDS HDEF_0618 NC_012751.1 603673 609699 D Possible N terminal truncation; hypothetical protein 603673..609699 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950221 YP_002923508.1 CDS HDEF_0619 NC_012751.1 610235 611917 D reverse transcriptase 610235..611917 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951945 YP_002923509.1 CDS HDEF_0620 NC_012751.1 611936 614392 D autotransporter adhesin 611936..614392 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950223 YP_002923510.1 CDS rtxA_04 NC_012751.1 614379 617042 D Possible C terminal truncation, paired with HDEF_0622; RTX-family protein-4 614379..617042 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950224 YP_002923511.1 CDS rtxA_05 NC_012751.1 617039 617680 D Possible N terminal truncation, paired with HDEF_0621; RTX-family protein-5 617039..617680 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950225 YP_002923512.1 CDS ribC NC_012751.1 617707 618375 R COG0307; riboflavin synthase, alpha subunit complement(617707..618375) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950226 YP_002923513.1 CDS gmk NC_012751.1 618580 619215 D COG0194; guanylate kinase 618580..619215 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950227 YP_002923514.1 CDS rpoZ NC_012751.1 619302 619574 D COG1758; RNA polymerase, omega subunit 619302..619574 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950228 YP_002923515.1 CDS spoT NC_012751.1 619583 621685 D COG0317; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 619583..621685 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950229 YP_002923516.1 CDS recG NC_012751.1 621786 623879 D COG1200; DNA helicase, ATP-dependent resolution of Holliday junctions, branch migration 621786..623879 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950230 YP_002923517.1 CDS groES NC_012751.1 624105 624410 D part of GroE chaperone system, mopB; COG0234; chaperone Hsp10 (GroES) 624105..624410 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950231 YP_002923518.1 CDS groEL NC_012751.1 624470 626128 D part of GroE chaperone system, mopA; COG0459; chaperone Hsp60 (GroEL) 624470..626128 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950232 YP_002923519.1 CDS HDEF_0630 NC_012751.1 626532 626675 D hypothetical protein 626532..626675 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950233 YP_002923520.1 CDS HDEF_0631 NC_012751.1 626977 627627 D hypothetical protein 626977..627627 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950234 YP_002923521.1 CDS HDEF_0632 NC_012751.1 627924 628034 D hypothetical protein 627924..628034 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950235 YP_002923522.1 CDS HDEF_0633 NC_012751.1 628432 628839 R hypothetical protein complement(628432..628839) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950236 YP_002923523.1 CDS HDEF_0634 NC_012751.1 628836 629477 R hypothetical protein complement(628836..629477) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950237 YP_002923524.1 CDS HDEF_0635 NC_012751.1 629464 630255 R hypothetical protein complement(629464..630255) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950238 YP_002923525.1 CDS rtxA_06 NC_012751.1 630249 630884 R RTX-family protein-6 complement(630249..630884) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950239 YP_002923526.1 CDS dapB NC_012751.1 631604 632425 D COG0289; dihydrodipicolinate reductase 631604..632425 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950240 YP_002923527.1 CDS brnQ NC_012751.1 632461 633780 R COG1114; branched-chain amino acid transport system II (LIV-II) (LIVCS family) complement(632461..633780) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950241 YP_002923528.1 CDS argS NC_012751.1 634391 636121 D COG0018; arginine tRNA synthetase 634391..636121 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950242 YP_002923529.1 CDS mviN NC_012751.1 636128 637663 R COG0728; virulence factor complement(636128..637663) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950243 YP_002923530.1 CDS xthA NC_012751.1 638394 639200 D COG0708; exonuclease III 638394..639200 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950244 YP_002923531.1 CDS sppA NC_012751.1 639254 641098 D COG0616; protease IV, a signal peptide peptidase 639254..641098 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950245 YP_002923532.1 CDS rpsU NC_012751.1 641391 641606 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 641391..641606 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950246 YP_002923533.1 CDS dnaG NC_012751.1 641800 643557 D COG0358; DNA biosynthesis; DNA primase 641800..643557 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950247 YP_002923534.1 CDS rpoD NC_012751.1 643712 645544 D COG0568; RNA polymerase, sigma 70 (sigma D) factor 643712..645544 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950248 YP_002923535.1 CDS zwf NC_012751.1 645671 647146 D COG0364; glucose-6-phosphate dehydrogenase 645671..647146 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950249 YP_002923536.1 CDS HDEF_0647 NC_012751.1 647258 647401 R hypothetical protein complement(647258..647401) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950250 YP_002923537.1 CDS HDEF_0648 NC_012751.1 647413 647832 R C terminal truncation; transcriptional regulator complement(647413..647832) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950251 YP_002923538.1 CDS znuB NC_012751.1 648347 649135 R involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter membrane component complement(648347..649135) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950252 YP_002923539.1 CDS znuC NC_012751.1 649128 649874 R COG1121; zinc ABC transporter ATP-binding protein complement(649128..649874) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950253 YP_002923540.1 CDS znuA NC_012751.1 649944 650864 D COG4531; high-affinity Zn transport protein (ABC superfamily, peri_bind) 649944..650864 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950254 YP_002923541.1 CDS HDEF_0652 NC_012751.1 650947 652197 D COG0739; M23 peptidase family protein 650947..652197 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950255 YP_002923542.1 CDS lpxM NC_012751.1 652230 653189 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 652230..653189 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950256 YP_002923543.1 CDS rppH NC_012751.1 653354 653845 D COG0494; dinucleoside polyphosphate hydrolase 653354..653845 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950257 YP_002923544.1 CDS pyrD NC_012751.1 653865 654875 D COG0167; dihydroorotate oxidase, FMN-linked 653865..654875 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950258 YP_002923545.1 CDS HDEF_0657 NC_012751.1 655346 657493 D COG0116,COG1092; 23S rRNA m(2)G2445 methyltransferase 655346..657493 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950260 YP_002923546.1 CDS uup NC_012751.1 657484 659409 D Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase 657484..659409 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950261 YP_002923547.1 CDS HDEF_0659 NC_012751.1 659771 659980 R hypothetical protein complement(659771..659980) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950262 YP_002923548.1 CDS HDEF_0660 NC_012751.1 660223 660327 D hypothetical protein 660223..660327 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950263 YP_002923549.1 CDS HDEF_0661 NC_012751.1 660260 660427 R hypothetical protein complement(660260..660427) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950264 YP_002923550.1 CDS HDEF_0662 NC_012751.1 660437 660580 R hypothetical protein complement(660437..660580) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950265 YP_002923551.1 CDS HDEF_0663 NC_012751.1 660826 660948 D hypothetical protein 660826..660948 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950266 YP_002923552.1 CDS slyA NC_012751.1 660969 661424 D Transcription regulator that can both activate or repress expression; transcriptional regulator SlyA 660969..661424 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950267 YP_002923553.1 CDS HDEF_0667 NC_012751.1 662757 663287 R hypothetical protein complement(662757..663287) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950270 YP_002923554.1 CDS HDEF_0668 NC_012751.1 663432 663551 R hypothetical protein complement(663432..663551) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950271 YP_002923555.1 CDS slyB NC_012751.1 663577 664047 R COG3133; outer membrane lipoprotein complement(663577..664047) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950272 YP_002923556.1 CDS pdxH NC_012751.1 664215 664877 D COG0259; pyridoxine 5'-phosphate oxidase 664215..664877 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950273 YP_002923557.1 CDS tyrS NC_012751.1 664967 666241 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 664967..666241 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950274 YP_002923558.1 CDS mrdA NC_012751.1 666254 668149 D COG0768; cell elongation-specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase) 666254..668149 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950275 YP_002923559.1 CDS mrdB NC_012751.1 668155 669270 D COG0772; cell wall shape-determining protein 668155..669270 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950276 YP_002923560.1 CDS dacA NC_012751.1 669380 670534 D COG1686; D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5 669380..670534 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950277 YP_002923561.1 CDS HDEF_0675 NC_012751.1 670559 670822 D COG2921; hypothetical protein 670559..670822 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950278 YP_002923562.1 CDS lipB NC_012751.1 670835 671527 D COG0321; lipoyl(octanyl)-acyl carrier protein: protein transferase 670835..671527 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950279 YP_002923563.1 CDS lipA NC_012751.1 671563 672513 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 671563..672513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950280 YP_002923564.1 CDS dnaB NC_012751.1 672695 674098 D COG0305; replicative DNA helicase; chromosome replication; chain elongation 672695..674098 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950281 YP_002923565.1 CDS alr NC_012751.1 674117 675193 D COG0787; alanine racemase 1, PLP-binding, biosynthetic 674117..675193 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950282 YP_002923566.1 CDS lysP NC_012751.1 675342 676832 D COG0833; lysine transporter 675342..676832 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950283 YP_002923567.1 CDS yeeF NC_012751.1 676911 678263 D COG0531; amino acid transport protein (APC family) 676911..678263 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950284 YP_002923568.1 CDS rnhA NC_012751.1 678355 678819 R COG0328; RNase HI, degrades RNA of DNA-RNA hybrids complement(678355..678819) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950285 YP_002923569.1 CDS dnaQ_1 NC_012751.1 678882 679607 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 678882..679607 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950286 YP_002923570.1 CDS HDEF_0689 NC_012751.1 680534 680650 D hypothetical protein 680534..680650 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950292 YP_002923571.1 CDS HDEF_0690 NC_012751.1 680709 680834 D hypothetical protein 680709..680834 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950293 YP_002923572.1 CDS purM NC_012751.1 680960 682027 D COG0150; phosphoribosylaminoimidazole synthetase (AIR synthetase) 680960..682027 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950294 YP_002923573.1 CDS purN NC_012751.1 682038 682700 D COG0299; phosphoribosylglycinamide formyltransferase 1 682038..682700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950295 YP_002923574.1 CDS speG NC_012751.1 682688 683236 D COG1670; spermidine N1-acetyltransferase 682688..683236 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950296 YP_002923575.1 CDS aroA NC_012751.1 683280 684566 D COG0128; 3-enolpyruvylshikimate-5-phosphate synthetase 683280..684566 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950297 YP_002923576.1 CDS cmk NC_012751.1 684601 685281 D COG0283; cytidine monophosphate (CMP) kinase 684601..685281 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950298 YP_002923577.1 CDS rpsA NC_012751.1 685401 687095 D COG0539; 30S ribosomal subunit protein S1 685401..687095 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950299 YP_002923578.1 CDS ihfB NC_012751.1 687143 687430 D COG0776; integration host factor (IHF), DNA-binding protein, beta subunit 687143..687430 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950300 YP_002923579.1 CDS HDEF_0698 NC_012751.1 687766 687921 D lipoprotein 687766..687921 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950301 YP_002923580.1 CDS dapF NC_012751.1 687934 688770 D COG0253; diaminopimelate epimerase 687934..688770 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950302 YP_002923581.1 CDS uvrD NC_012751.1 688820 691015 D COG0210; DNA-dependent ATPase I and helicase II 688820..691015 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950303 YP_002923582.1 CDS HDEF_0701 NC_012751.1 691398 691508 R hypothetical protein complement(691398..691508) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950304 YP_002923583.1 CDS smpB NC_012751.1 691651 692133 R COG0691; trans-translation protein complement(691651..692133) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950305 YP_002923584.1 CDS hemC NC_012751.1 692230 693159 D COG0181; hydroxymethylbilane synthase (porphobilinogen deaminase) 692230..693159 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950306 YP_002923585.1 CDS hemD NC_012751.1 693168 693914 D COG1587; uroporphyrinogen III synthase 693168..693914 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950307 YP_002923586.1 CDS hemX NC_012751.1 693948 695036 D COG2959; uroporphyrinogen III methylase 693948..695036 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950308 YP_002923587.1 CDS hemY NC_012751.1 695039 695800 D C terminal truncation; COG3071; protoheme IX synthesis protein 695039..695800 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950309 YP_002923588.1 CDS HDEF_0707 NC_012751.1 696011 696121 R hypothetical protein complement(696011..696121) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950310 YP_002923589.1 CDS HDEF_0708 NC_012751.1 696153 698435 D C terminal truncation, possibly with HDEF_0709; hypothetical protein 696153..698435 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950311 YP_002923590.1 CDS HDEF_0709 NC_012751.1 698380 699090 D N terminal truncation, possibly with HDEF_0708; COG3468; hypothetical protein 698380..699090 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950312 YP_002923591.1 CDS rpoC NC_012751.1 699238 703461 R COG0086; RNA polymerase subunit beta' complement(699238..703461) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950313 YP_002923592.1 CDS rpoB NC_012751.1 703725 707750 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(703725..707750) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950314 YP_002923593.1 CDS rplL NC_012751.1 708189 708563 R COG0222; 50S ribosomal subunit protein L7/L12 complement(708189..708563) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950315 YP_002923594.1 CDS rplJ NC_012751.1 708616 709113 R COG0244; 50S ribosomal subunit protein L10 complement(708616..709113) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950316 YP_002923595.1 CDS rplA NC_012751.1 709471 710172 R COG0081; 50S ribosomal protein L1 complement(709471..710172) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950317 YP_002923596.1 CDS rplK NC_012751.1 710177 710605 R COG0080; 50S ribosomal protein L11 complement(710177..710605) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950318 YP_002923597.1 CDS nusG NC_012751.1 710980 711519 R COG0250; component in transcription antitermination complement(710980..711519) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950319 YP_002923598.1 CDS secE NC_012751.1 711521 711904 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(711521..711904) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950320 YP_002923599.1 CDS tufB NC_012751.1 711982 713166 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(711982..713166) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950321 YP_002923600.1 CDS fusA NC_012751.1 713252 715357 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(713252..715357) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950322 YP_002923601.1 CDS rpsG NC_012751.1 715489 715959 R COG0049; 30S ribosomal protein S7 complement(715489..715959) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950323 YP_002923602.1 CDS rpsL NC_012751.1 716057 716431 R COG0048; 30S ribosomal protein S12 complement(716057..716431) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950324 YP_002923603.1 CDS talB NC_012751.1 716749 720050 D interrupted by GII intron; COG0176; transaldolase B join(716749..717351,719697..720050) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950325 YP_002923605.1 CDS HDEF_0724 NC_012751.1 720077 720220 R hypothetical protein complement(720077..720220) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950326 YP_002923606.1 CDS HDEF_0725 NC_012751.1 720201 720980 R COG4582; hypothetical protein complement(720201..720980) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950327 YP_002923607.1 CDS HDEF_0726 NC_012751.1 720999 722681 R reverse transcriptase complement(720999..722681) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951946 YP_002923608.1 CDS trbC_1 NC_012751.1 723104 724171 D N terminal truncation; TrbC conjugal transfer protein 723104..724171 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950329 YP_002923609.1 CDS finO_1 NC_012751.1 724178 724729 R conjugal transfer fertility inhibition protein complement(724178..724729) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950330 YP_002923610.1 CDS HDEF_0729 NC_012751.1 724751 727999 R interrupted by GII intron; COG5464; hypothetical protein complement(join(724751..725382,727762..727999)) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950331 YP_002923611.1 CDS hupA_2 NC_012751.1 728011 728370 R COG0776; HU, DNA-binding transcriptional regulator, alpha subunit-2 complement(728011..728370) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950332 YP_002923612.1 CDS mobB_2 NC_012751.1 730394 730702 R MobB relaxase/mobilization protein complement(730394..730702) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950334 YP_002923613.1 CDS mobC_2 NC_012751.1 731103 731387 D MobC relaxase/mobilization protein 731103..731387 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950335 YP_002923614.1 CDS HDEF_0735 NC_012751.1 731395 731490 D hypothetical protein 731395..731490 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950336 YP_002923615.1 CDS HDEF_0736 NC_012751.1 731500 731799 R hypothetical protein complement(731500..731799) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950337 YP_002923616.1 CDS HDEF_0737 NC_012751.1 731792 732427 R plasmid partition protein ParA-like protein complement(731792..732427) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950338 YP_002923617.1 CDS HDEF_0738 NC_012751.1 732680 732934 D addiction module, HicA-related protein 732680..732934 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950339 YP_002923618.1 CDS HDEF_0739 NC_012751.1 732931 733272 D COG4226; addiction module, HicB-related protein 732931..733272 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950340 YP_002923619.1 CDS HDEF_0740 NC_012751.1 733323 733886 R COG1961; resolvase complement(733323..733886) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950341 YP_002923620.1 CDS int_2 NC_012751.1 734090 735100 D integrase 734090..735100 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950342 YP_002923621.1 CDS HDEF_0742 NC_012751.1 735291 735518 R hypothetical protein complement(735291..735518) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950343 YP_002923622.1 CDS HDEF_0743 NC_012751.1 735921 736676 D signal peptidase I 735921..736676 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950344 YP_002923623.1 CDS HDEF_0744 NC_012751.1 736679 737272 D hypothetical protein 736679..737272 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950345 YP_002923624.1 CDS HDEF_0745 NC_012751.1 737889 738782 D restriction endonuclease 737889..738782 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950346 YP_002923625.1 CDS ndk NC_012751.1 741559 741984 D COG0105; multifunctional: nucleoside diphosphate kinase; apyrimidinic endonuclease; 3'-phosphodiesterase 741559..741984 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950348 YP_002923626.1 CDS HDEF_0748 NC_012751.1 741962 742111 D hypothetical protein 741962..742111 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950349 YP_002923627.1 CDS HDEF_0749 NC_012751.1 742047 743228 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 742047..743228 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950350 YP_002923628.1 CDS pilF NC_012751.1 743326 744072 D COG3063; PilF type IV pilus biogenesis/stability protein 743326..744072 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950351 YP_002923629.1 CDS ispG NC_012751.1 744743 745855 D COG0821; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 744743..745855 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950353 YP_002923630.1 CDS hisS NC_012751.1 745878 747167 D COG0124; histidine tRNA synthetase 745878..747167 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950354 YP_002923631.1 CDS HDEF_0754 NC_012751.1 747191 747814 D COG2976; hypothetical protein 747191..747814 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950355 YP_002923632.1 CDS yfgL NC_012751.1 747826 749013 D with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis; outer membrane protein assembly complex subunit YfgL 747826..749013 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950356 YP_002923633.1 CDS engA NC_012751.1 749169 750659 D COG1160; GTP-binding protein 749169..750659 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950357 YP_002923634.1 CDS HDEF_0757 NC_012751.1 750770 750871 D hypothetical protein 750770..750871 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950358 YP_002923635.1 CDS HDEF_0758 NC_012751.1 750868 751062 R hypothetical protein complement(750868..751062) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950359 YP_002923636.1 CDS HDEF_0760 NC_012751.1 751786 751914 R hypothetical protein complement(751786..751914) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950361 YP_002923637.1 CDS HDEF_0761 NC_012751.1 751874 751975 R hypothetical protein complement(751874..751975) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950362 YP_002923638.1 CDS HDEF_0762 NC_012751.1 751991 752194 D hypothetical protein 751991..752194 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950363 YP_002923639.1 CDS HDEF_0763 NC_012751.1 752014 752199 R hypothetical protein complement(752014..752199) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950364 YP_002923640.1 CDS glnS NC_012751.1 752711 754369 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 752711..754369 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950365 YP_002923641.1 CDS pyrG NC_012751.1 754436 756073 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 754436..756073 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950366 YP_002923642.1 CDS eno NC_012751.1 756150 757451 D COG0148; enolase 756150..757451 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950367 YP_002923643.1 CDS queC NC_012751.1 757555 758265 D COG0603; queuosine biosynthesis protein 757555..758265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950368 YP_002923644.1 CDS zipA NC_012751.1 758383 759216 D COG3115; cell division protein involved in FtsK recruitment to Z ring 758383..759216 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950369 YP_002923645.1 CDS ligA NC_012751.1 759213 761321 D COG0272; DNA ligase 759213..761321 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950370 YP_002923646.1 CDS HDEF_0770 NC_012751.1 761398 762483 R acyltransferase complement(761398..762483) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950371 YP_002923647.1 CDS HDEF_0772 NC_012751.1 764029 767844 R COG2911; hypothetical protein complement(764029..767844) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950373 YP_002923648.1 CDS HDEF_0773 NC_012751.1 767841 769538 R COG0729; outer membrane protein complement(767841..769538) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950374 YP_002923649.1 CDS apaH NC_012751.1 769590 770417 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(769590..770417) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950375 YP_002923650.1 CDS ksgA NC_012751.1 770476 771279 R COG0030; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase, kasugamycin resistance complement(770476..771279) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950376 YP_002923651.1 CDS pdxA NC_012751.1 771269 772267 R COG1995; NAD-dependent dehydrogenase/carboxylase, pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit complement(771269..772267) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950377 YP_002923652.1 CDS surA NC_012751.1 772257 773225 R involved in maturation of outer membrane proteins; COG0760; peptidyl-prolyl cis-trans isomerase complement(772257..773225) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950378 YP_002923653.1 CDS imp NC_012751.1 773326 775668 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(773326..775668) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950379 YP_002923654.1 CDS HDEF_0779 NC_012751.1 775735 775833 D hypothetical protein 775735..775833 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950380 YP_002923655.1 CDS pdxB NC_012751.1 776063 777178 D COG0111; erythronate-4-phosphate dehydrogenase 776063..777178 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950381 YP_002923656.1 CDS HDEF_0781 NC_012751.1 777260 778267 D COG0136; semialdehyde dehydrogenase 777260..778267 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950382 YP_002923657.1 CDS truA NC_012751.1 778267 779100 D COG0101; pseudouridylate synthase I 778267..779100 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950383 YP_002923658.1 CDS dedA NC_012751.1 779161 779829 D COG0586; integral membrane protein 779161..779829 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950384 YP_002923659.1 CDS accD NC_012751.1 779875 780777 D COG0777; acetylCoA carboxylase, carboxyltranferase subunit beta 779875..780777 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950385 YP_002923660.1 CDS folC NC_012751.1 780929 782215 D COG0285; bifunctional folylpolyglutamate synthase; dihydrofolate synthase 780929..782215 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950386 YP_002923661.1 CDS HDEF_0786 NC_012751.1 782205 782759 D COG3147; hypothetical protein 782205..782759 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950387 YP_002923662.1 CDS HDEF_0787 NC_012751.1 782807 783316 D COG1286; colicin V production protein 782807..783316 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950388 YP_002923663.1 CDS purF NC_012751.1 783331 784845 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 783331..784845 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950389 YP_002923664.1 CDS ubiX NC_012751.1 784861 785439 D COG0163; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 784861..785439 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950390 YP_002923665.1 CDS HDEF_0790 NC_012751.1 785488 785928 D COG0607; sulfurtransferase 785488..785928 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950391 YP_002923666.1 CDS secB NC_012751.1 785978 786466 D COG1952; molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway) 785978..786466 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950392 YP_002923667.1 CDS HDEF_0792 NC_012751.1 786468 788309 D COG1045,COG0240; fusion of serine acetyltransferase; glycerol-3-phosphate dehydrogenase (NAD+) 786468..788309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950393 YP_002923668.1 CDS HDEF_0793 NC_012751.1 788499 788891 D COG2960; hypothetical protein 788499..788891 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950394 YP_002923669.1 CDS rfaE NC_012751.1 788900 790330 R COG2870; bifunctional ADP-L-glycero-D-manno-heptose synthase: kinase (N-terminal); sugar nucleotide transferase (C-terminal) complement(788900..790330) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950395 YP_002923670.1 CDS rplI NC_012751.1 790435 790887 R COG0359; 50S ribosomal subunit protein L9 complement(790435..790887) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950396 YP_002923671.1 CDS HDEF_0796 NC_012751.1 791012 792694 R reverse transcriptase complement(791012..792694) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951948 YP_002923672.1 CDS lolA NC_012751.1 793960 794571 D COG2834; periplasmic chaperone effects translocation of lipoproteins from inner membrane to outer membrane 793960..794571 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950399 YP_002923673.1 CDS parE NC_012751.1 794740 796638 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 794740..796638 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950400 YP_002923674.1 CDS HDEF_0800 NC_012751.1 796722 797747 D LD-carboxypeptidase family protein 796722..797747 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950401 YP_002923675.1 CDS parC NC_012751.1 797931 800168 D COG0188; DNA topoisomerase IV, subunit A 797931..800168 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950402 YP_002923676.1 CDS plsC NC_012751.1 800229 800966 D COG0204; 1-acyl-sn-glycerol-3-phosphate acyltransferase 800229..800966 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950403 YP_002923677.1 CDS pykF NC_012751.1 801073 802485 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(801073..802485) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950404 YP_002923678.1 CDS HDEF_0804 NC_012751.1 802799 802906 R hypothetical protein complement(802799..802906) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950405 YP_002923679.1 CDS HDEF_0805 NC_012751.1 802994 803380 R COG1555; hypothetical protein complement(802994..803380) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950406 YP_002923680.1 CDS HDEF_0806 NC_012751.1 803528 805402 R COG0760; peptidyl-prolyl cis-trans isomerase (rotamase D) complement(803528..805402) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950407 YP_002923681.1 CDS lon NC_012751.1 805490 807919 R COG0466; DNA-binding ATP-dependent protease La; heat shock K-protein complement(805490..807919) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950408 YP_002923682.1 CDS clpX NC_012751.1 808213 809523 R COG1219; ATPase, chaperone subunit of serine protease complement(808213..809523) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950409 YP_002923683.1 CDS clpP NC_012751.1 809566 810213 R COG0740; proteolytic subunit of clpA-clpP ATP-dependent serine protease complement(809566..810213) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950410 YP_002923684.1 CDS tig NC_012751.1 810361 811683 R COG0544; peptidyl-prolyl cis/trans isomerase complement(810361..811683) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950411 YP_002923685.1 CDS HDEF_0811 NC_012751.1 811996 812124 R hypothetical protein complement(811996..812124) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950412 YP_002923686.1 CDS HDEF_0816 NC_012751.1 812867 813001 D hypothetical protein 812867..813001 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950417 YP_002923687.1 CDS prmA NC_012751.1 812967 813884 R COG2264; methylation of 50S ribosomal subunit protein L11 complement(812967..813884) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950418 YP_002923688.1 CDS panF NC_012751.1 813860 815332 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(813860..815332) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950419 YP_002923689.1 CDS HDEF_0819 NC_012751.1 815329 815604 R COG3924; hypothetical protein complement(815329..815604) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950420 YP_002923690.1 CDS HDEF_0820 NC_012751.1 815982 816518 D hypothetical protein 815982..816518 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950421 YP_002923691.1 CDS HDEF_0821 NC_012751.1 816578 816985 D hypothetical protein 816578..816985 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950422 YP_002923692.1 CDS pabA NC_012751.1 817090 817677 D COG0512; aminodeoxychorismate synthase subunit II, component of p-aminobenzoate synthase multienzyme complex 817090..817677 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950423 YP_002923693.1 CDS lpxL NC_012751.1 817821 818597 D COG1560; lauroyl transferase 817821..818597 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950424 YP_002923694.1 CDS HDEF_0824 NC_012751.1 818589 818774 R hypothetical protein complement(818589..818774) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950425 YP_002923695.1 CDS cspC NC_012751.1 819969 820178 D COG1278; cold shock protein, transcription antiterminator, affects expression of rpoS and uspA 819969..820178 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950427 YP_002923696.1 CDS crp NC_012751.1 820347 821009 R COG0664; transcriptional regulator, cyclic AMP receptor protein (CAMP-binding family), interacts with RNAP complement(820347..821009) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950428 YP_002923697.1 CDS recN NC_012751.1 821242 822903 D COG0497; recombination and repair protein 821242..822903 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950429 YP_002923698.1 CDS smpA NC_012751.1 822959 823288 D COG2913; hypothetical protein 822959..823288 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950430 YP_002923699.1 CDS ribF NC_012751.1 823373 824317 D COG0196; bifunctional flavokinase; FAD synthetase 823373..824317 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950431 YP_002923700.1 CDS ileS NC_012751.1 824345 827212 D COG0060; isoleucine tRNA synthetase 824345..827212 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950432 YP_002923701.1 CDS lspA NC_012751.1 827213 827731 D COG0597; prolipoprotein signal peptidase (SPase II) 827213..827731 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950433 YP_002923702.1 CDS fkbP NC_012751.1 827733 828350 D COG1047; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 827733..828350 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950434 YP_002923703.1 CDS ispH NC_012751.1 828331 829290 D COG0761; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein 828331..829290 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950435 YP_002923704.1 CDS HDEF_0835 NC_012751.1 829442 830908 D hypothetical protein 829442..830908 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950436 YP_002923705.1 CDS HDEF_0836 NC_012751.1 831330 831734 R ISHde1, transposase complement(831330..831734) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950437 YP_002923706.1 CDS HDEF_0837 NC_012751.1 831775 832152 R ISHde1, transposase complement(831775..832152) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950438 YP_002923707.1 CDS HDEF_0839 NC_012751.1 832169 832423 R hypothetical protein complement(832169..832423) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950439 YP_002923708.1 CDS HDEF_0838 NC_012751.1 832308 832550 D hypothetical protein 832308..832550 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950441 YP_002923709.1 CDS HDEF_0840 NC_012751.1 832547 832648 R hypothetical protein complement(832547..832648) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950440 YP_002923710.1 CDS rfaF NC_012751.1 832670 833743 D catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core; ADP-heptose:LPS heptosyltransferase II 832670..833743 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950442 YP_002923711.1 CDS rfaC NC_012751.1 833753 834721 D COG0859; ADP-heptose:LPS heptosyl transferase I 833753..834721 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950443 YP_002923712.1 CDS HDEF_0843 NC_012751.1 834735 842768 R inner membrane protein complement(834735..842768) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950444 YP_002923713.1 CDS HDEF_0845 NC_012751.1 845953 852780 D inner membrane protein 845953..852780 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950446 YP_002923715.1 CDS HDEF_0847 NC_012751.1 853831 855513 D reverse transcriptase 853831..855513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951949 YP_002923716.1 CDS rtxA_09 NC_012751.1 861264 865793 R Possible N terminal truncation, paired with HDEF_0849; RTX-family protein-9 complement(861264..865793) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950448 YP_002923717.1 CDS rtxA_08 NC_012751.1 865705 866589 R Possible C terminal truncation, paired with HDEF_0848; RTX-family protein-8 complement(865705..866589) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950449 YP_002923718.1 CDS HDEF_0850 NC_012751.1 866760 868256 R hypothetical protein complement(866760..868256) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950450 YP_002923719.1 CDS HDEF_0851 NC_012751.1 868654 868758 D hypothetical protein 868654..868758 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950451 YP_002923720.1 CDS HDEF_0852 NC_012751.1 868765 869043 R hypothetical protein complement(868765..869043) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950452 YP_002923721.1 CDS HDEF_0853 NC_012751.1 869040 869435 R COG5393; hypothetical protein complement(869040..869435) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950453 YP_002923722.1 CDS HDEF_0854 NC_012751.1 869440 869742 R COG4575; hypothetical protein complement(869440..869742) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950454 YP_002923723.1 CDS yqjA NC_012751.1 869896 870564 R COG0586; integral membrane protein complement(869896..870564) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950455 YP_002923724.1 CDS arnC NC_012751.1 870873 871859 D COG0463; UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase 870873..871859 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950456 YP_002923725.1 CDS arnA NC_012751.1 871859 873871 D Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains; bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase 871859..873871 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950457 YP_002923726.1 CDS arnD NC_012751.1 873868 874767 D COG0726; polysaccharide deacetylase 873868..874767 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950458 YP_002923727.1 CDS arnT NC_012751.1 874772 876433 D catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A; 4-amino-4-deoxy-L-arabinose transferase 874772..876433 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950459 YP_002923728.1 CDS arnE NC_012751.1 876430 876765 D COG0697; subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase 876430..876765 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950460 YP_002923729.1 CDS arnF NC_012751.1 876762 877157 D COG0697; subunit of ArnE/ArnF UDP-phosphate-alpha-L-Ara4N flippase 876762..877157 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950461 YP_002923730.1 CDS mrcB NC_012751.1 877192 879573 R bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell; penicillin-binding protein 1b complement(877192..879573) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950462 YP_002923731.1 CDS polA NC_012751.1 879627 882518 R COG0749; multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) complement(879627..882518) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950463 YP_002923732.1 CDS HDEF_0864 NC_012751.1 882855 883787 R hypothetical protein complement(882855..883787) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950464 YP_002923733.1 CDS HDEF_0865 NC_012751.1 884119 885123 R C terminal truncation; hypothetical protein complement(884119..885123) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950465 YP_002923734.1 CDS pssA NC_012751.1 885396 886760 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(885396..886760) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950466 YP_002923735.1 CDS HDEF_0867 NC_012751.1 886913 887017 R hypothetical protein complement(886913..887017) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950467 YP_002923736.1 CDS aspS NC_012751.1 887064 888833 D COG0173; aspartate tRNA synthetase 887064..888833 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950468 YP_002923737.1 CDS HDEF_0869 NC_012751.1 888884 889648 D COG0217; hypothetical protein 888884..889648 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950469 YP_002923738.1 CDS ruvC NC_012751.1 889654 890133 D COG0817; Holliday junction nuclease 889654..890133 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950470 YP_002923739.1 CDS HDEF_0872 NC_012751.1 890553 890672 D hypothetical protein 890553..890672 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950472 YP_002923740.1 CDS expI NC_012751.1 891123 891779 D COG3916; autoinducer synthase 891123..891779 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950473 YP_002923741.1 CDS expR NC_012751.1 891762 892493 R COG2771; autoinducer response regulator complement(891762..892493) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950474 YP_002923742.1 CDS purL NC_012751.1 892560 896462 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(892560..896462) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950475 YP_002923743.1 CDS pepN NC_012751.1 896606 899221 R COG0308; aminopeptidase N complement(896606..899221) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950476 YP_002923744.1 CDS asnC NC_012751.1 899394 900794 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 899394..900794 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950477 YP_002923745.1 CDS HDEF_0878 NC_012751.1 900781 901038 D hypothetical protein 900781..901038 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950478 YP_002923746.1 CDS HDEF_0879 NC_012751.1 901021 901266 R hypothetical protein complement(901021..901266) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950479 YP_002923747.1 CDS HDEF_0880 NC_012751.1 901715 901825 D hypothetical protein 901715..901825 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950480 YP_002923748.1 CDS HDEF_0881 NC_012751.1 901822 902016 D hypothetical protein 901822..902016 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950481 YP_002923749.1 CDS HDEF_0882 NC_012751.1 901926 902042 R hypothetical protein complement(901926..902042) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950482 YP_002923750.1 CDS HDEF_0883 NC_012751.1 902151 903455 R N terminal truncation; hypothetical protein complement(902151..903455) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950483 YP_002923751.1 CDS HDEF_0884 NC_012751.1 903750 903959 D hypothetical protein 903750..903959 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950484 YP_002923752.1 CDS rus NC_012751.1 903962 904237 D COG4570; endonuclease RUS 903962..904237 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950485 YP_002923753.1 CDS HDEF_0886 NC_012751.1 904244 904339 D hypothetical protein 904244..904339 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950486 YP_002923754.1 CDS HDEF_0887 NC_012751.1 904453 904731 D hypothetical protein 904453..904731 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950487 YP_002923755.1 CDS HDEF_0888 NC_012751.1 904728 904820 R hypothetical protein complement(904728..904820) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950488 YP_002923756.1 CDS HDEF_0889 NC_012751.1 904838 905083 D hypothetical protein 904838..905083 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950489 YP_002923757.1 CDS HDEF_0890 NC_012751.1 905288 905626 D phage holin 905288..905626 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950490 YP_002923758.1 CDS HDEF_0892 NC_012751.1 906110 906499 D hypothetical protein 906110..906499 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950492 YP_002923759.1 CDS HDEF_0895 NC_012751.1 907168 907536 D hypothetical protein 907168..907536 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950495 YP_002923760.1 CDS HDEF_0896 NC_012751.1 907692 907802 D hypothetical protein 907692..907802 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950496 YP_002923761.1 CDS HDEF_0897 NC_012751.1 907795 909684 D hypothetical protein 907795..909684 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950497 YP_002923762.1 CDS HDEF_0898 NC_012751.1 909687 910988 D COG4228; Mu-like prophage DNA circulation protein 909687..910988 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950498 YP_002923763.1 CDS HDEF_0901 NC_012751.1 912848 913759 D N terminal truncation; COG3299; phage baseplate J-like protein 912848..913759 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950501 YP_002923764.1 CDS HDEF_0903 NC_012751.1 914405 915106 D phage tail collar protein 914405..915106 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950503 YP_002923765.1 CDS HDEF_0904 NC_012751.1 915111 915647 D phage tail assembly chaperone 915111..915647 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950504 YP_002923766.1 CDS HDEF_0905 NC_012751.1 915716 915961 R hypothetical protein complement(915716..915961) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950505 YP_002923767.1 CDS HDEF_0906 NC_012751.1 916180 916881 R hypothetical protein complement(916180..916881) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950506 YP_002923768.1 CDS HDEF_0907 NC_012751.1 917080 917214 D hypothetical protein 917080..917214 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950507 YP_002923769.1 CDS dcm_1 NC_012751.1 917408 918613 R COG0270; DNA cytosine methylase complement(917408..918613) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950508 YP_002923770.1 CDS HDEF_0908 NC_012751.1 918604 918717 D hypothetical protein 918604..918717 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950510 YP_002923771.1 CDS HDEF_0910 NC_012751.1 918937 919587 R N terminal truncation; hypothetical protein complement(918937..919587) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950509 YP_002923772.1 CDS HDEF_0912 NC_012751.1 920771 921160 D N terminal truncation; COG5464; transposase 920771..921160 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950512 YP_002923773.1 CDS HDEF_0913 NC_012751.1 921229 922113 D NAD-dependent DNA ligase 921229..922113 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950513 YP_002923774.1 CDS HDEF_0914 NC_012751.1 922228 922812 D hypothetical protein 922228..922812 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950514 YP_002923775.1 CDS HDEF_0916 NC_012751.1 923127 923690 R hypothetical protein complement(923127..923690) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950516 YP_002923776.1 CDS C_2 NC_012751.1 923737 924063 R phage repressor protein complement(923737..924063) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950517 YP_002923777.1 CDS cox_2 NC_012751.1 924262 924534 D phage regulatory protein 924262..924534 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950518 YP_002923778.1 CDS HDEF_0919 NC_012751.1 924860 925294 D single-strand DNA-binding protein 924860..925294 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950519 YP_002923779.1 CDS HDEF_0920 NC_012751.1 925303 925623 R hypothetical protein complement(925303..925623) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950520 YP_002923780.1 CDS HDEF_0921 NC_012751.1 925768 926622 D hypothetical protein 925768..926622 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950521 YP_002923781.1 CDS HDEF_0922 NC_012751.1 926738 927457 D phage DNA-binding protein (Roi) 926738..927457 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950522 YP_002923782.1 CDS HDEF_0924 NC_012751.1 929303 929656 D hypothetical protein 929303..929656 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950524 YP_002923783.1 CDS HDEF_0925 NC_012751.1 929638 930102 R COG2801; ISHde4 transposase, orfB complement(929638..930102) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950525 YP_002923784.1 CDS HDEF_0926 NC_012751.1 930397 930654 R COG2963; ISHde4 transposase, orfA complement(930397..930654) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950526 YP_002923785.1 CDS HDEF_0927 NC_012751.1 930825 931046 D N terminal truncation; COG3316; transposase 930825..931046 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950527 YP_002923786.1 CDS HDEF_0928 NC_012751.1 931081 932652 R hypothetical protein complement(931081..932652) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950528 YP_002923787.1 CDS aexT_1 NC_012751.1 933036 933764 R N terminal truncation; ADP-ribosyltransferase toxin-1 complement(933036..933764) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950530 YP_002923788.1 CDS HDEF_0931 NC_012751.1 933990 934181 D C terminal truncation; COG1961; resolvase 933990..934181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950531 YP_002923789.1 CDS HDEF_0932 NC_012751.1 934216 934491 D N and C terminal truncations; COG1961; resolvase 934216..934491 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950532 YP_002923790.1 CDS HDEF_0935 NC_012751.1 936291 936695 R ISHde1, transposase complement(936291..936695) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950535 YP_002923791.1 CDS HDEF_0936 NC_012751.1 936736 937113 R ISHde1, transposase complement(936736..937113) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950536 YP_002923792.1 CDS HDEF_0938 NC_012751.1 938385 938600 R N terminal truncation; COG4644; Tn3-like transposase complement(938385..938600) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950538 YP_002923793.1 CDS HDEF_0939 NC_012751.1 938644 939009 D ISHde2, transposase 938644..939009 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950539 YP_002923794.1 CDS HDEF_0940 NC_012751.1 939150 939431 D ISHde2, transposase 939150..939431 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950540 YP_002923795.1 CDS HDEF_0941 NC_012751.1 939570 939770 D hypothetical protein 939570..939770 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950541 YP_002923796.1 CDS HDEF_0944 NC_012751.1 942053 942340 R COG3514; hypothetical protein complement(942053..942340) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950544 YP_002923797.1 CDS HDEF_0945 NC_012751.1 942315 942593 R COG2929; hypothetical protein complement(942315..942593) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950545 YP_002923798.1 CDS pilO_1 NC_012751.1 942662 943972 D PilO type IV pilus biogenesis outer membrane protein 942662..943972 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950546 YP_002923799.1 CDS pilP_1 NC_012751.1 943959 944369 D PilP type IV pilus biogenesis/secretion protein 943959..944369 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950547 YP_002923800.1 CDS pilQ_1 NC_012751.1 944366 945913 D PilQ type IV pilus biogenesis protein ATPase 944366..945913 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950548 YP_002923801.1 CDS pilR_1 NC_012751.1 945900 946964 D PilR type IV pilus biosynthesis protein 945900..946964 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950549 YP_002923802.1 CDS pilS2_1 NC_012751.1 946975 947556 D PilS2 type IV pilus biosynthesis protein 946975..947556 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950550 YP_002923803.1 CDS HDEF_0951 NC_012751.1 947596 947895 R COG3668; addiction module complement(947596..947895) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950551 YP_002923804.1 CDS HDEF_0952 NC_012751.1 947883 948173 R COG3905; hypothetical protein complement(947883..948173) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950552 YP_002923805.1 CDS pilV_1 NC_012751.1 948347 949615 D PilV type IV pilus minor pilin subunit 948347..949615 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950553 YP_002923806.1 CDS pilM_1 NC_012751.1 949665 950096 D PilM type IV pilus biogenesis/secretion protein 949665..950096 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950554 YP_002923807.1 CDS HDEF_0955 NC_012751.1 950099 950719 D hypothetical protein 950099..950719 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950555 YP_002923808.1 CDS pilT_2 NC_012751.1 950762 951226 D COG0741; twitching motility protein PilT 950762..951226 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950556 YP_002923809.1 CDS traH_1 NC_012751.1 951294 951737 D TraH conjugal transfer protein 951294..951737 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950557 YP_002923810.1 CDS traI_1 NC_012751.1 951752 952540 D TraI conjugal transfer protein 951752..952540 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950558 YP_002923811.1 CDS traJ_1 NC_012751.1 952527 953696 D TraJ conjugal transfer protein 952527..953696 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950559 YP_002923812.1 CDS HDEF_0960 NC_012751.1 953691 954098 R hypothetical protein complement(953691..954098) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950560 YP_002923813.1 CDS HDEF_0961 NC_012751.1 954107 954349 R COG4456; hypothetical protein complement(954107..954349) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950561 YP_002923814.1 CDS traK_1 NC_012751.1 954455 954715 D TraK conjugal transfer protein 954455..954715 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950562 YP_002923815.1 CDS traC_1 NC_012751.1 954733 957219 D DNA primase TraC 954733..957219 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950563 YP_002923816.1 CDS traL NC_012751.1 957505 957936 D TraL conjugal transfer protein 957505..957936 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950565 YP_002923817.1 CDS traM_1 NC_012751.1 957961 958632 D TraM conjugal transfer protein 957961..958632 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950566 YP_002923818.1 CDS traN NC_012751.1 958629 959633 D TraN conjugal transfer protein 958629..959633 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950567 YP_002923819.1 CDS traO NC_012751.1 959643 960818 D TraO conjugal transfer protein 959643..960818 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950568 YP_002923820.1 CDS HDEF_0969 NC_012751.1 960815 961231 D hypothetical protein 960815..961231 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950569 YP_002923821.1 CDS traU NC_012751.1 961224 964280 D TraU conjugal transfer protein 961224..964280 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950570 YP_002923822.1 CDS traW NC_012751.1 964338 965477 D TraW conjugal transfer protein 964338..965477 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950571 YP_002923823.1 CDS traX NC_012751.1 965470 966018 D TraX conjugal transfer protein 965470..966018 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950572 YP_002923824.1 CDS HDEF_0974 NC_012751.1 968339 968977 D surface exclusion protein 968339..968977 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950574 YP_002923825.1 CDS HDEF_0975 NC_012751.1 969054 969308 D hypothetical protein 969054..969308 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950575 YP_002923826.1 CDS HDEF_0976 NC_012751.1 969318 969734 D COG1487; hypothetical protein 969318..969734 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950576 YP_002923827.1 CDS HDEF_0977 NC_012751.1 969808 969993 D hypothetical protein 969808..969993 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950577 YP_002923828.1 CDS trbA NC_012751.1 970063 971073 D N and C terminal truncations; TrbA conjugal transfer protein 970063..971073 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950578 YP_002923829.1 CDS trbB NC_012751.1 971149 972081 D TrbB conjugal transfer protein 971149..972081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950579 YP_002923830.1 CDS trbC_2 NC_012751.1 972074 973321 D C terminal truncation; TrbC conjugal transfer protein 972074..973321 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950580 YP_002923831.1 CDS HDEF_0981 NC_012751.1 973394 973858 R C terminus, interrupted by GII intron; reverse transcriptase complement(973394..973858) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951950 YP_002923832.1 CDS HDEF_0982 NC_012751.1 974478 976160 D reverse transcriptase 974478..976160 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951951 YP_002923833.1 CDS HDEF_0983 NC_012751.1 976237 977421 R N terminus, interrupted by GII intron; reverse transcriptase complement(976237..977421) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950583 YP_002923834.1 CDS dnaC NC_012751.1 977967 978500 R C terminal truncation; DNA biosynthesis protein complement(977967..978500) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951952 YP_002923835.1 CDS O_2 NC_012751.1 978497 979402 R phage replication protein complement(978497..979402) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950585 YP_002923836.1 CDS HDEF_0986 NC_012751.1 979395 979547 R hypothetical protein complement(979395..979547) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950586 YP_002923837.1 CDS HDEF_0987 NC_012751.1 979604 980191 R P4 phage ash-like protein complement(979604..980191) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950587 YP_002923838.1 CDS HDEF_0988 NC_012751.1 980328 980810 R hypothetical protein complement(980328..980810) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950588 YP_002923839.1 CDS HDEF_0989 NC_012751.1 980881 981105 R COG4197; hypothetical protein complement(980881..981105) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950589 YP_002923840.1 CDS HDEF_0990 NC_012751.1 981228 981929 D phage repressor 981228..981929 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950590 YP_002923841.1 CDS HDEF_0991 NC_012751.1 982104 982307 R hypothetical protein complement(982104..982307) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950591 YP_002923842.1 CDS HDEF_0992 NC_012751.1 982984 984666 D reverse transcriptase 982984..984666 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951953 YP_002923843.1 CDS HDEF_0993 NC_012751.1 984743 985936 R hypothetical protein complement(984743..985936) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950593 YP_002923844.1 CDS HDEF_0994 NC_012751.1 985951 986052 D hypothetical protein 985951..986052 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950594 YP_002923845.1 CDS HDEF_0995 NC_012751.1 986219 986428 D hypothetical protein 986219..986428 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950595 YP_002923846.1 CDS HDEF_0997 NC_012751.1 986683 988017 R hypothetical protein complement(986683..988017) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950597 YP_002923847.1 CDS HDEF_0998 NC_012751.1 988285 988506 D hypothetical protein 988285..988506 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950598 YP_002923848.1 CDS HDEF_1000 NC_012751.1 989003 989407 R ISHde1, transposase complement(989003..989407) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950600 YP_002923849.1 CDS HDEF_1001 NC_012751.1 989448 989825 R ISHde1, transposase complement(989448..989825) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950601 YP_002923850.1 CDS HDEF_1003 NC_012751.1 990267 990632 D phage holin 990267..990632 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950603 YP_002923851.1 CDS HDEF_1005 NC_012751.1 990872 991954 D COG0863; DNA methylase 990872..991954 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950605 YP_002923852.1 CDS HDEF_1006 NC_012751.1 992025 992213 D phage holin 992025..992213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950606 YP_002923853.1 CDS HDEF_1007 NC_012751.1 992210 992707 D COG3772; phage lysozyme 992210..992707 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950607 YP_002923854.1 CDS HDEF_1008 NC_012751.1 992826 993689 R hypothetical protein complement(992826..993689) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950608 YP_002923855.1 CDS HDEF_1009 NC_012751.1 993779 993952 D hypothetical protein 993779..993952 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950609 YP_002923856.1 CDS HDEF_1010 NC_012751.1 993985 994455 D phage lysis protein 993985..994455 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950610 YP_002923857.1 CDS HDEF_1011 NC_012751.1 994436 994780 D COG1403; phage HNH endonuclease 994436..994780 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950611 YP_002923858.1 CDS HDEF_1012 NC_012751.1 994617 994841 D hypothetical protein 994617..994841 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950612 YP_002923859.1 CDS HDEF_1013 NC_012751.1 994782 995105 R COG3636; addiction module antitoxin complement(994782..995105) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950613 YP_002923860.1 CDS HDEF_1014 NC_012751.1 995109 995435 R COG3657; addiction module toxin complement(995109..995435) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950614 YP_002923861.1 CDS HDEF_1015 NC_012751.1 995635 996267 D ISHde5, transposase 995635..996267 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950615 YP_002923862.1 CDS HDEF_1016 NC_012751.1 996298 996579 R ISHde2, transposase complement(996298..996579) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950616 YP_002923863.1 CDS HDEF_1017 NC_012751.1 996720 997085 R ISHde2, transposase complement(996720..997085) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950617 YP_002923864.1 CDS HDEF_1019 NC_012751.1 997505 997930 R hypothetical protein complement(997505..997930) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950619 YP_002923865.1 CDS HDEF_1020 NC_012751.1 998021 998881 R COG2367; beta-lactamase complement(998021..998881) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950620 YP_002923866.1 CDS HDEF_1021 NC_012751.1 999191 999292 R hypothetical protein complement(999191..999292) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950621 YP_002923867.1 CDS HDEF_1022 NC_012751.1 999550 999645 D hypothetical protein 999550..999645 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950622 YP_002923868.1 CDS HDEF_1023 NC_012751.1 999935 1000096 D hypothetical protein 999935..1000096 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950623 YP_002923869.1 CDS HDEF_1024 NC_012751.1 1000153 1000479 D COG0393; hypothetical protein 1000153..1000479 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950624 YP_002923870.1 CDS HDEF_1026 NC_012751.1 1001248 1001385 R hypothetical protein complement(1001248..1001385) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950626 YP_002923871.1 CDS HDEF_1027 NC_012751.1 1001784 1002986 R pentapeptide repeat-containing protein complement(1001784..1002986) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950627 YP_002923872.1 CDS repA_1 NC_012751.1 1003936 1004604 R N terminal truncation; plasmid replication initiator protein complement(1003936..1004604) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950629 YP_002923873.1 CDS mobB_3 NC_012751.1 1006827 1007135 R MobB relaxase/mobilization protein complement(1006827..1007135) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950631 YP_002923874.1 CDS HDEF_1032 NC_012751.1 1007536 1007838 D hypothetical protein 1007536..1007838 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950632 YP_002923875.1 CDS HDEF_1033 NC_012751.1 1007908 1008000 R hypothetical protein complement(1007908..1008000) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950633 YP_002923876.1 CDS HDEF_1036 NC_012751.1 1008927 1009337 R COG5499; transcriptional regulator complement(1008927..1009337) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950636 YP_002923877.1 CDS HDEF_1037 NC_012751.1 1009334 1009645 R COG4680; hypothetical protein complement(1009334..1009645) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950637 YP_002923878.1 CDS HDEF_1038 NC_012751.1 1009869 1010504 D plasmid partition protein ParA-like protein 1009869..1010504 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950638 YP_002923879.1 CDS HDEF_1039 NC_012751.1 1010498 1010755 D hypothetical protein 1010498..1010755 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950639 YP_002923880.1 CDS HDEF_1042 NC_012751.1 1012448 1012579 D hypothetical protein 1012448..1012579 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950642 YP_002923881.1 CDS HDEF_1044 NC_012751.1 1013234 1014103 D hypothetical protein 1013234..1014103 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950644 YP_002923882.1 CDS queF NC_012751.1 1014106 1014948 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1014106..1014948 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950645 YP_002923883.1 CDS HDEF_1047 NC_012751.1 1015872 1016429 R COG1961; inversion of adjacent DNA complement(1015872..1016429) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950647 YP_002923884.1 CDS HDEF_1048 NC_012751.1 1016431 1016805 R COG4634; hypothetical protein complement(1016431..1016805) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950648 YP_002923885.1 CDS HDEF_1049 NC_012751.1 1016802 1017059 R COG2442; hypothetical protein complement(1016802..1017059) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950649 YP_002923886.1 CDS HDEF_1052 NC_012751.1 1017679 1018029 R COG3547; ISHde7 transposase complement(1017679..1018029) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950652 YP_002923887.1 CDS HDEF_1053 NC_012751.1 1017998 1018609 R COG3547; ISHde7 transposase complement(1017998..1018609) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950653 YP_002923888.1 CDS HDEF_1055 NC_012751.1 1018799 1019941 R N terminal truncation; COG4644; Tn3-like transposase complement(1018799..1019941) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950654 YP_002923889.1 CDS HDEF_1054 NC_012751.1 1019941 1020399 D N terminal truncation; COG3547; ISHde7 transposase 1019941..1020399 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950656 YP_002923890.1 CDS HDEF_1056 NC_012751.1 1020368 1020718 D N terminal truncation; COG3547; ISHde7 transposase 1020368..1020718 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950655 YP_002923891.1 CDS repA_2 NC_012751.1 1020968 1021834 R plasmid replication initiator protein complement(1020968..1021834) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950658 YP_002923892.1 CDS HDEF_1059 NC_012751.1 1022235 1022372 D hypothetical protein 1022235..1022372 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950659 YP_002923893.1 CDS HDEF_1061 NC_012751.1 1022611 1022739 R hypothetical protein complement(1022611..1022739) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950661 YP_002923894.1 CDS HDEF_1064 NC_012751.1 1023470 1023607 R hypothetical protein complement(1023470..1023607) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950664 YP_002923895.1 CDS HDEF_1065 NC_012751.1 1023695 1023808 D hypothetical protein 1023695..1023808 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950665 YP_002923896.1 CDS HDEF_1066 NC_012751.1 1023805 1023930 D hypothetical protein 1023805..1023930 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950666 YP_002923897.1 CDS HDEF_1068 NC_012751.1 1024335 1025417 D N terminal truncation; relaxase/mobilization protein 1024335..1025417 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950668 YP_002923898.1 CDS mobD NC_012751.1 1025418 1025630 D MobD relaxase/mobilization protein 1025418..1025630 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950669 YP_002923899.1 CDS HDEF_1070 NC_012751.1 1025746 1026177 D hypothetical protein 1025746..1026177 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950670 YP_002923900.1 CDS HDEF_1072 NC_012751.1 1026420 1026668 D hypothetical protein 1026420..1026668 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950672 YP_002923901.1 CDS HDEF_1073 NC_012751.1 1026714 1027406 R transcriptional regulator complement(1026714..1027406) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950673 YP_002923902.1 CDS HDEF_1074 NC_012751.1 1027587 1027862 R phage protein complement(1027587..1027862) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950674 YP_002923903.1 CDS HDEF_1076 NC_012751.1 1028391 1028615 D COG4710; addiction module antitoxin 1028391..1028615 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950676 YP_002923904.1 CDS HDEF_1077 NC_012751.1 1028599 1028865 D COG2026; addiction module antitoxin 1028599..1028865 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950677 YP_002923905.1 CDS HDEF_1079 NC_012751.1 1029468 1029872 R ISHde1, transposase complement(1029468..1029872) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950679 YP_002923906.1 CDS HDEF_1080 NC_012751.1 1029913 1030290 R ISHde1, transposase complement(1029913..1030290) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950680 YP_002923907.1 CDS HDEF_1083 NC_012751.1 1031156 1033195 D COG0286; type II restriction endonuclease 1031156..1033195 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950683 YP_002923908.1 CDS HDEF_1084 NC_012751.1 1033285 1034295 D R of type II restriction and modification system 1033285..1034295 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950684 YP_002923909.1 CDS HDEF_1085 NC_012751.1 1034310 1034564 R COG4115; addiction module toxin complement(1034310..1034564) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950685 YP_002923910.1 CDS HDEF_1086 NC_012751.1 1034561 1034812 R Antitoxin that counteracts the effect of the YoeB toxin; antitoxin YefM complement(1034561..1034812) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950686 YP_002923911.1 CDS HDEF_1088 NC_012751.1 1035387 1035935 R protein with partial replication initiation protein region complement(1035387..1035935) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950688 YP_002923912.1 CDS HDEF_1089 NC_012751.1 1036116 1036391 R phage protein complement(1036116..1036391) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950689 YP_002923913.1 CDS HDEF_1091 NC_012751.1 1036593 1036706 R hypothetical protein complement(1036593..1036706) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950691 YP_002923914.1 CDS HDEF_1092 NC_012751.1 1036771 1036896 D hypothetical protein 1036771..1036896 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950692 YP_002923915.1 CDS HDEF_1094 NC_012751.1 1036843 1036977 R hypothetical protein complement(1036843..1036977) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950693 YP_002923916.1 CDS HDEF_1093 NC_012751.1 1036954 1037181 D hypothetical protein 1036954..1037181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950695 YP_002923917.1 CDS HDEF_1095 NC_012751.1 1037138 1037245 R hypothetical protein complement(1037138..1037245) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950694 YP_002923918.1 CDS HDEF_1096 NC_012751.1 1037289 1037420 R hypothetical protein complement(1037289..1037420) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950696 YP_002923919.1 CDS HDEF_1097 NC_012751.1 1037607 1037699 R hypothetical protein complement(1037607..1037699) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950697 YP_002923920.1 CDS HDEF_1098 NC_012751.1 1037689 1037928 R hypothetical protein complement(1037689..1037928) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950698 YP_002923921.1 CDS HDEF_1099 NC_012751.1 1037925 1038218 R N terminal truncation; COG1192; plasmid partition protein ParA-like protein complement(1037925..1038218) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950699 YP_002923922.1 CDS HDEF_1100 NC_012751.1 1038306 1038449 D hypothetical protein 1038306..1038449 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950700 YP_002923923.1 CDS HDEF_1102 NC_012751.1 1038430 1038573 R hypothetical protein complement(1038430..1038573) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950701 YP_002923924.1 CDS yopT_1 NC_012751.1 1039113 1039841 R cysteine protease YopT-like effector complement(1039113..1039841) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950702 YP_002923925.1 CDS HDEF_1104 NC_012751.1 1039822 1040142 R hypothetical protein complement(1039822..1040142) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950704 YP_002923926.1 CDS HDEF_1105 NC_012751.1 1040194 1040424 R hypothetical protein complement(1040194..1040424) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950705 YP_002923927.1 CDS HDEF_1106 NC_012751.1 1040397 1040612 R hypothetical protein complement(1040397..1040612) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950706 YP_002923928.1 CDS HDEF_1107 NC_012751.1 1040620 1041087 R COG2801; ISHde4 transposase, orfB complement(1040620..1041087) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950707 YP_002923929.1 CDS HDEF_1108 NC_012751.1 1041084 1041266 R COG2801; ISHde4 transposase, orfA complement(1041084..1041266) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950708 YP_002923930.1 CDS HDEF_1110 NC_012751.1 1041902 1042177 R N terminal truncation; phage terminase, small subunit, P27 family complement(1041902..1042177) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950710 YP_002923931.1 CDS HDEF_1111 NC_012751.1 1042410 1042541 R hypothetical protein complement(1042410..1042541) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950711 YP_002923932.1 CDS HDEF_1112 NC_012751.1 1042516 1042875 R phage HNH endonuclease complement(1042516..1042875) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950712 YP_002923933.1 CDS HDEF_1113 NC_012751.1 1043551 1043700 D COG2801; ISHde4 transposase, orfA 1043551..1043700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950713 YP_002923934.1 CDS HDEF_1114 NC_012751.1 1043697 1044164 D N and C terminal truncations; COG2801; ISHde4 transposase, orfB 1043697..1044164 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950714 YP_002923935.1 CDS topB NC_012751.1 1044220 1044516 R C terminal truncation; COG0550; DNA topoisomerase III complement(1044220..1044516) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950715 YP_002923936.1 CDS HDEF_1116 NC_012751.1 1044668 1044865 R hypothetical protein complement(1044668..1044865) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950716 YP_002923937.1 CDS HDEF_1117 NC_012751.1 1045304 1045474 R hypothetical protein complement(1045304..1045474) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950717 YP_002923938.1 CDS nleD NC_012751.1 1046455 1049616 D non-LEE encoded type III effector 1046455..1049616 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950719 YP_002923939.1 CDS HDEF_1120 NC_012751.1 1049966 1050094 D hypothetical protein 1049966..1050094 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950720 YP_002923940.1 CDS HDEF_1121 NC_012751.1 1050119 1050415 R COG3668; addiction module complement(1050119..1050415) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950721 YP_002923941.1 CDS mpg_1 NC_012751.1 1050650 1051162 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1050650..1051162 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950722 YP_002923942.1 CDS HDEF_1123 NC_012751.1 1051547 1052647 D similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 1051547..1052647 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950723 YP_002923943.1 CDS HDEF_1124 NC_012751.1 1052991 1053719 D transcriptional regulator 1052991..1053719 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950724 YP_002923944.1 CDS HDEF_1125 NC_012751.1 1053996 1054292 D addiction module antitoxin 1053996..1054292 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950725 YP_002923945.1 CDS HDEF_1126 NC_012751.1 1054707 1054808 D hypothetical protein 1054707..1054808 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950726 YP_002923946.1 CDS HDEF_1127 NC_012751.1 1054872 1056833 D hypothetical protein 1054872..1056833 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950727 YP_002923947.1 CDS HDEF_1129 NC_012751.1 1057537 1057653 D hypothetical protein 1057537..1057653 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950729 YP_002923948.1 CDS HDEF_1130 NC_012751.1 1057746 1057850 R hypothetical protein complement(1057746..1057850) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950730 YP_002923949.1 CDS HDEF_1132 NC_012751.1 1058521 1059198 R transcriptional regulator complement(1058521..1059198) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950732 YP_002923950.1 CDS HDEF_1133 NC_012751.1 1059443 1059640 R hypothetical protein complement(1059443..1059640) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950733 YP_002923951.1 CDS HDEF_1136 NC_012751.1 1060544 1060918 R N terminal truncation; COG5464; transposase complement(1060544..1060918) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950736 YP_002923952.1 CDS HDEF_1137 NC_012751.1 1061025 1061309 R transcriptional regulator complement(1061025..1061309) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950737 YP_002923953.1 CDS HDEF_1138 NC_012751.1 1061311 1061643 R hypothetical protein complement(1061311..1061643) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950738 YP_002923954.1 CDS HDEF_1139 NC_012751.1 1061977 1062261 R N terminal truncation; COG1961; resolvase complement(1061977..1062261) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950739 YP_002923955.1 CDS HDEF_1140 NC_012751.1 1062468 1062842 D C terminal truncation, similar to pHD5AT gene HDEF_p0006; COG2850; hypothetical protein 1062468..1062842 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950740 YP_002923956.1 CDS repA_3 NC_012751.1 1062781 1063593 R C terminal truncation; plasmid replication initiator protein complement(1062781..1063593) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950741 YP_002923957.1 CDS HDEF_1142 NC_012751.1 1063774 1064373 R N terminal truncation; COG4644; ISHde8 transposase complement(1063774..1064373) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950742 YP_002923958.1 CDS HDEF_1143 NC_012751.1 1064943 1065038 D transposase 1064943..1065038 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950743 YP_002923959.1 CDS HDEF_1144 NC_012751.1 1065063 1065458 R C terminal truncation; COG1961; resolvase complement(1065063..1065458) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950744 YP_002923960.1 CDS HDEF_1145 NC_012751.1 1065986 1066099 D hypothetical protein 1065986..1066099 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950745 YP_002923961.1 CDS exoY_1 NC_012751.1 1066339 1067652 D adenylate cyclase-1 1066339..1067652 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950746 YP_002923962.1 CDS HDEF_1148 NC_012751.1 1068174 1068584 R N terminal truncation; plasmid partition protein ParA-like protein complement(1068174..1068584) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950748 YP_002923963.1 CDS HDEF_1150 NC_012751.1 1069466 1069966 R N terminal truncation; transposase complement(1069466..1069966) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950750 YP_002923964.1 CDS HDEF_1151 NC_012751.1 1070164 1070463 D COG2963; ISHde3, transposase 1070164..1070463 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950751 YP_002923965.1 CDS HDEF_1152 NC_012751.1 1070680 1071081 D COG2801; ISHde3, transposase 1070680..1071081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950752 YP_002923966.1 CDS HDEF_1153 NC_012751.1 1071408 1071557 R C terminal truncation; hypothetical protein complement(1071408..1071557) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950753 YP_002923967.1 CDS HDEF_1154 NC_012751.1 1071589 1072230 R N terminal truncation; Mu-like phage P protein complement(1071589..1072230) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950754 YP_002923968.1 CDS yopT_2 NC_012751.1 1072717 1073304 D cysteine protease YopT-like effector 1072717..1073304 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950755 YP_002923969.1 CDS HDEF_1156 NC_012751.1 1073875 1075557 D reverse transcriptase 1073875..1075557 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951955 YP_002923970.1 CDS rtxA_10 NC_012751.1 1075689 1079978 D Possible C terminal truncation, paired with HDEF_1158 and HDEF_1159; RTX-family protein-10 1075689..1079978 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950757 YP_002923971.1 CDS rtxA_11 NC_012751.1 1079993 1080580 D Possible C and N terminal truncations with HDEF_1157 and HDEF_1159; RTX-family protein-11 1079993..1080580 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950758 YP_002923972.1 CDS rtxA_12 NC_012751.1 1080699 1082216 D Possible N terminal truncation, paired with HDEF_1157 and HDEF_1158; RTX-family protein-12 1080699..1082216 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950759 YP_002923973.1 CDS HDEF_1160 NC_012751.1 1082509 1083114 R COG0778; nitroreductase complement(1082509..1083114) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950760 YP_002923974.1 CDS HDEF_1161 NC_012751.1 1083413 1083568 D hypothetical protein 1083413..1083568 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950761 YP_002923975.1 CDS hupB NC_012751.1 1083881 1084108 D COG0776; DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation 1083881..1084108 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950762 YP_002923976.1 CDS HDEF_1165 NC_012751.1 1085168 1085266 R hypothetical protein complement(1085168..1085266) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950765 YP_002923977.1 CDS vsr NC_012751.1 1086631 1087077 D COG3727; DNA mismatch endonuclease 1086631..1087077 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950767 YP_002923978.1 CDS HDEF_1168 NC_012751.1 1087074 1088279 D type II restriction endonuclease, EcoRII-C domain protein 1087074..1088279 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950768 YP_002923979.1 CDS HDEF_1169 NC_012751.1 1088578 1088685 D hypothetical protein 1088578..1088685 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950769 YP_002923980.1 CDS HDEF_1170 NC_012751.1 1088863 1089621 R hypothetical protein complement(1088863..1089621) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950770 YP_002923981.1 CDS HDEF_1171 NC_012751.1 1089998 1090096 R hypothetical protein complement(1089998..1090096) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950771 YP_002923982.1 CDS HDEF_1172 NC_012751.1 1090505 1090747 D hypothetical protein 1090505..1090747 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950772 YP_002923983.1 CDS HDEF_1174 NC_012751.1 1091701 1092129 D hypothetical protein 1091701..1092129 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950774 YP_002923984.1 CDS HDEF_1175 NC_012751.1 1092263 1092469 D hypothetical protein 1092263..1092469 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950775 YP_002923985.1 CDS HDEF_1176 NC_012751.1 1092688 1092843 D hypothetical protein 1092688..1092843 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950776 YP_002923986.1 CDS HDEF_1177 NC_012751.1 1093284 1095212 D hypothetical protein 1093284..1095212 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950777 YP_002923987.1 CDS HDEF_1178 NC_012751.1 1095328 1095453 R hypothetical protein complement(1095328..1095453) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950778 YP_002923988.1 CDS HDEF_1180 NC_012751.1 1096455 1096841 R COG3744; twitching motility protein PilT complement(1096455..1096841) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950780 YP_002923989.1 CDS HDEF_1181 NC_012751.1 1096841 1097083 R COG4118; addiction module antitoxin complement(1096841..1097083) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950781 YP_002923990.1 CDS HDEF_1182 NC_012751.1 1097652 1097900 R COG3636; addiction module antitoxin complement(1097652..1097900) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950782 YP_002923991.1 CDS rtxA_13 NC_012751.1 1098163 1098540 R RTX-family protein-13 complement(1098163..1098540) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950784 YP_002923992.1 CDS HDEF_1185 NC_012751.1 1098613 1100151 R hypothetical protein complement(1098613..1100151) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950785 YP_002923993.1 CDS rtxA_14 NC_012751.1 1101813 1107737 R RTX-family protein-14 complement(1101813..1107737) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950786 YP_002923994.1 CDS HDEF_1187 NC_012751.1 1107893 1108096 D hypothetical protein 1107893..1108096 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950787 YP_002923995.1 CDS HDEF_1188 NC_012751.1 1108167 1108358 D N terminal truncation; transcriptional regulator 1108167..1108358 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950788 YP_002923996.1 CDS HDEF_1189 NC_012751.1 1108471 1108743 R hypothetical protein complement(1108471..1108743) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950789 YP_002923997.1 CDS HDEF_1190 NC_012751.1 1108740 1108970 R hypothetical protein complement(1108740..1108970) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950790 YP_002923998.1 CDS HDEF_1191 NC_012751.1 1109445 1109687 R hypothetical protein complement(1109445..1109687) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950791 YP_002923999.1 CDS HDEF_1192 NC_012751.1 1109744 1109881 D hypothetical protein 1109744..1109881 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950792 YP_002924000.1 CDS HDEF_1193 NC_012751.1 1109920 1110042 R hypothetical protein complement(1109920..1110042) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950793 YP_002924001.1 CDS rtxA_15 NC_012751.1 1110126 1111793 D RTX-family protein-15 1110126..1111793 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950794 YP_002924002.1 CDS HDEF_1195 NC_012751.1 1111871 1112014 D hypothetical protein 1111871..1112014 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950795 YP_002924003.1 CDS HDEF_1196 NC_012751.1 1112088 1112681 D COG1896; hydrolase, HD superfamily 1112088..1112681 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950796 YP_002924004.1 CDS HDEF_1197 NC_012751.1 1112723 1112821 R hypothetical protein complement(1112723..1112821) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950797 YP_002924005.1 CDS HDEF_1198 NC_012751.1 1112836 1112931 D hypothetical protein 1112836..1112931 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950798 YP_002924006.1 CDS HDEF_1199 NC_012751.1 1113041 1113145 D hypothetical protein 1113041..1113145 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950799 YP_002924007.1 CDS bioD NC_012751.1 1113288 1113995 R COG0132; dethiobiotin synthetase complement(1113288..1113995) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950800 YP_002924008.1 CDS bioC NC_012751.1 1113973 1114749 R COG0500; biotin biosynthesis; reaction prior to pimeloyl CoA complement(1113973..1114749) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950801 YP_002924009.1 CDS bioF NC_012751.1 1114746 1115900 R COG0156; 7-keto-8-aminopelargonic acid synthetase complement(1114746..1115900) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950802 YP_002924010.1 CDS bioB NC_012751.1 1115901 1116977 R COG0502; biotin synthetase complement(1115901..1116977) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950803 YP_002924011.1 CDS msbA NC_012751.1 1117101 1118855 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease complement(1117101..1118855) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950804 YP_002924012.1 CDS HDEF_1205 NC_012751.1 1118871 1121192 R hypothetical protein complement(1118871..1121192) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950805 YP_002924013.1 CDS HDEF_1206 NC_012751.1 1121205 1121300 D hypothetical protein 1121205..1121300 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950806 YP_002924014.1 CDS HDEF_1207 NC_012751.1 1121397 1121489 R hypothetical protein complement(1121397..1121489) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950807 YP_002924015.1 CDS putA NC_012751.1 1121556 1125380 R COG4230; multifunctional: transcriptional repressor of proline utilization; proline dehydrogenase; pyrroline-5-carboxylate dehydrogenase complement(1121556..1125380) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950808 YP_002924016.1 CDS HDEF_1209 NC_012751.1 1125581 1125673 D hypothetical protein 1125581..1125673 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950809 YP_002924017.1 CDS putP NC_012751.1 1125594 1127081 D COG0591; major sodium:proline symporter (SSS family) 1125594..1127081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950810 YP_002924018.1 CDS HDEF_1211 NC_012751.1 1127144 1127437 R hypothetical protein complement(1127144..1127437) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950811 YP_002924019.1 CDS HDEF_1212 NC_012751.1 1127430 1127897 R hypothetical protein complement(1127430..1127897) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950812 YP_002924020.1 CDS HDEF_1213 NC_012751.1 1127894 1128154 R weak similarity to C terminus of orgAb; hypothetical protein complement(1127894..1128154) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950813 YP_002924021.1 CDS orgAb NC_012751.1 1128147 1128614 R oxygen-regulated invasion protein complement(1128147..1128614) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950814 YP_002924022.1 CDS orgA NC_012751.1 1128571 1129149 R oxygen-regulated invasion protein complement(1128571..1129149) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950815 YP_002924023.1 CDS prgK NC_012751.1 1129150 1129899 R COG4669; type III needle complex inner membrane lipoprotein complement(1129150..1129899) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950816 YP_002924024.1 CDS prgJ NC_012751.1 1129899 1130198 R type III needle inner rod protein complement(1129899..1130198) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950817 YP_002924025.1 CDS HDEF_1218 NC_012751.1 1130260 1130616 R type III secretion needle protein complement(1130260..1130616) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950818 YP_002924026.1 CDS prgH NC_012751.1 1130631 1131839 R type III needle complex inner membrane protein complement(1130631..1131839) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950819 YP_002924027.1 CDS HDEF_1220 NC_012751.1 1131864 1131986 R hypothetical protein complement(1131864..1131986) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950820 YP_002924028.1 CDS HDEF_1221 NC_012751.1 1132081 1132200 D hypothetical protein 1132081..1132200 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950821 YP_002924029.1 CDS HDEF_1222 NC_012751.1 1132355 1132591 D hypothetical protein 1132355..1132591 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950822 YP_002924030.1 CDS HDEF_1223 NC_012751.1 1133137 1134849 D reverse transcriptase 1133137..1134849 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951956 YP_002924031.1 CDS pilQ_2 NC_012751.1 1134830 1135195 D N terminal truncation; PilQ type IV pilus biogenesis protein ATPase, partial 1134830..1135195 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950824 YP_002924032.1 CDS ibpB NC_012751.1 1136493 1136987 R COG0071; small heat shock protein complement(1136493..1136987) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950826 YP_002924033.1 CDS pilR_2 NC_012751.1 1137096 1138196 D PilR type IV pilus biosynthesis protein 1137096..1138196 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950827 YP_002924034.1 CDS pilS NC_012751.1 1138199 1138825 D PilS type IV pilus prepilin 1138199..1138825 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950828 YP_002924035.1 CDS HDEF_1229 NC_012751.1 1138859 1138975 D hypothetical protein 1138859..1138975 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950829 YP_002924036.1 CDS pilT_3 NC_012751.1 1138920 1139381 D COG0741; PilT lytic transglycosylase 1138920..1139381 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950830 YP_002924037.1 CDS HDEF_1231 NC_012751.1 1139378 1139866 D hypothetical protein 1139378..1139866 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950831 YP_002924038.1 CDS HDEF_1232 NC_012751.1 1139799 1140065 R COG3041; addiction module toxin complement(1139799..1140065) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950832 YP_002924039.1 CDS HDEF_1233 NC_012751.1 1140068 1140325 R COG3077; addiction module antitoxin complement(1140068..1140325) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950833 YP_002924040.1 CDS HDEF_1234 NC_012751.1 1140499 1140597 R hypothetical protein complement(1140499..1140597) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950834 YP_002924041.1 CDS HDEF_1235 NC_012751.1 1140776 1140991 D COG2963; ISHde4 transposase, orfA 1140776..1140991 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950835 YP_002924042.1 CDS HDEF_1236 NC_012751.1 1141286 1141753 D COG2801; ISHde4 transposase, orfB 1141286..1141753 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950836 YP_002924043.1 CDS HDEF_1238 NC_012751.1 1142289 1142651 R hypothetical protein complement(1142289..1142651) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950838 YP_002924044.1 CDS HDEF_1239 NC_012751.1 1142657 1143283 R hypothetical protein complement(1142657..1143283) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950839 YP_002924045.1 CDS HDEF_1240 NC_012751.1 1143621 1143902 R ISHde2, transposase complement(1143621..1143902) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950840 YP_002924046.1 CDS HDEF_1241 NC_012751.1 1144043 1144408 R ISHde2, transposase complement(1144043..1144408) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950841 YP_002924047.1 CDS HDEF_1243 NC_012751.1 1144673 1144849 R hypothetical protein complement(1144673..1144849) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950842 YP_002924048.1 CDS trkD NC_012751.1 1145141 1147009 R Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH; potassium transport protein Kup complement(1145141..1147009) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950843 YP_002924049.1 CDS HDEF_1245 NC_012751.1 1147149 1147253 R hypothetical protein complement(1147149..1147253) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950845 YP_002924050.1 CDS HDEF_1246 NC_012751.1 1147392 1147496 D hypothetical protein 1147392..1147496 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950846 YP_002924051.1 CDS HDEF_1247 NC_012751.1 1147665 1148009 R hypothetical protein complement(1147665..1148009) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950847 YP_002924052.1 CDS rtxA_16 NC_012751.1 1150161 1155554 R RTX-family protein-16 complement(1150161..1155554) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950850 YP_002924053.1 CDS HDEF_1251 NC_012751.1 1156207 1157889 D reverse transcriptase 1156207..1157889 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951957 YP_002924054.1 CDS HDEF_1252 NC_012751.1 1158008 1158715 D hypothetical protein 1158008..1158715 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950852 YP_002924055.1 CDS HDEF_1253 NC_012751.1 1159074 1159463 D hypothetical protein 1159074..1159463 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950853 YP_002924056.1 CDS aroE NC_012751.1 1159540 1160376 R COG0169; dehydroshikimate reductase, NAD(P)-binding complement(1159540..1160376) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950854 YP_002924057.1 CDS rsuA NC_012751.1 1160376 1161098 R COG1187; 16S rRNA pseudouridylate 516 synthase complement(1160376..1161098) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950855 YP_002924058.1 CDS pgl NC_012751.1 1161127 1162131 R COG2706; 6-phosphogluconolactonase complement(1161127..1162131) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950856 YP_002924059.1 CDS HDEF_1257 NC_012751.1 1162148 1162297 R hypothetical protein complement(1162148..1162297) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950857 YP_002924060.1 CDS hemF NC_012751.1 1162522 1163460 D COG0408; coproporphyrinogen III oxidase 1162522..1163460 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950858 YP_002924061.1 CDS rplM NC_012751.1 1163742 1164170 D COG0102; 50S ribosomal protein L13 1163742..1164170 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950859 YP_002924062.1 CDS rpsI NC_012751.1 1164185 1164577 D COG0103; 30S ribosomal protein S9 1164185..1164577 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950860 YP_002924063.1 CDS sspA NC_012751.1 1164773 1165513 D activator of transcription for bacteriophage P1 late genes; COG0625; stringent starvation protein A 1164773..1165513 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950861 YP_002924064.1 CDS sspB NC_012751.1 1165590 1166081 D COG2969; stringent starvation protein B, specificity factor for ClpXP protease 1165590..1166081 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950862 YP_002924065.1 CDS HDEF_1264 NC_012751.1 1168941 1169099 R hypothetical protein complement(1168941..1169099) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950864 YP_002924066.1 CDS HDEF_1265 NC_012751.1 1169080 1169190 R hypothetical protein complement(1169080..1169190) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950865 YP_002924067.1 CDS HDEF_1266 NC_012751.1 1169159 1169548 R hypothetical protein complement(1169159..1169548) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950866 YP_002924068.1 CDS HDEF_1267 NC_012751.1 1169554 1169799 R hypothetical protein complement(1169554..1169799) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950867 YP_002924069.1 CDS HDEF_1268 NC_012751.1 1169832 1169969 D hypothetical protein 1169832..1169969 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950868 YP_002924070.1 CDS HDEF_1269 NC_012751.1 1170204 1171247 D hypothetical protein 1170204..1171247 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950869 YP_002924071.1 CDS hslU NC_012751.1 1171343 1172674 R COG1220; ATPase of the HslUV protease, also functions as molecular chaperone complement(1171343..1172674) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950870 YP_002924072.1 CDS hslV NC_012751.1 1172681 1173217 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1172681..1173217) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950871 YP_002924073.1 CDS ftsN NC_012751.1 1173306 1173998 R COG3087; essential cell division protein, epimerase- or mutase-like protein complement(1173306..1173998) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950872 YP_002924074.1 CDS aroP NC_012751.1 1174334 1175698 D COG1113; aromatic amino acid transport protein (APC family) 1174334..1175698 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950873 YP_002924075.1 CDS nadC NC_012751.1 1175783 1176778 D COG0157; quinolinate phosphoribosyltransferase 1175783..1176778 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950874 YP_002924076.1 CDS HDEF_1275 NC_012751.1 1176667 1177491 R COG3022; hypothetical protein complement(1176667..1177491) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950875 YP_002924077.1 CDS phrB NC_012751.1 1178211 1179665 D COG0415; deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding 1178211..1179665 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950877 YP_002924078.1 CDS HDEF_1278 NC_012751.1 1179655 1180398 D COG0327; hypothetical protein 1179655..1180398 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950878 YP_002924079.1 CDS serS NC_012751.1 1180548 1181840 D COG0172; serine tRNA synthetase; also charges selenocystein tRNA with serine 1180548..1181840 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950879 YP_002924080.1 CDS HDEF_1280 NC_012751.1 1182035 1182691 D hypothetical protein 1182035..1182691 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950880 YP_002924081.1 CDS HDEF_1281 NC_012751.1 1182879 1183952 R hypothetical protein complement(1182879..1183952) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950881 YP_002924082.1 CDS xseA NC_012751.1 1184399 1185745 R COG1570; exonuclease VII, large subunit complement(1184399..1185745) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950882 YP_002924083.1 CDS HDEF_1283 NC_012751.1 1185861 1187477 R metallopeptidase complement(1185861..1187477) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950883 YP_002924084.1 CDS HDEF_1284 NC_012751.1 1187659 1189623 R extracellular metallopeptidase complement(1187659..1189623) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950884 YP_002924085.1 CDS HDEF_1285 NC_012751.1 1189676 1189771 R hypothetical protein complement(1189676..1189771) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950885 YP_002924086.1 CDS HDEF_1286 NC_012751.1 1190029 1190163 D hypothetical protein 1190029..1190163 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950886 YP_002924087.1 CDS mgtA NC_012751.1 1190206 1192905 D COG0474; P-type ATPase, Mg2+ ATPase transport protein 1190206..1192905 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950887 YP_002924088.1 CDS cspE_2 NC_012751.1 1193210 1193428 D COG1278; RNA chaperone, transcription antiterminator, affects expression of rpoS and uspA 1193210..1193428 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950888 YP_002924089.1 CDS HDEF_1289 NC_012751.1 1193500 1194087 R COG3009; hypothetical protein complement(1193500..1194087) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950889 YP_002924090.1 CDS pqiB NC_012751.1 1194087 1195745 R COG3008; paraquat-inducible protein B complement(1194087..1195745) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950890 YP_002924091.1 CDS pqiA NC_012751.1 1195742 1196965 R COG2995; paraquat-inducible protein A, membrane complement(1195742..1196965) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950891 YP_002924092.1 CDS HDEF_1292 NC_012751.1 1197050 1197142 R hypothetical protein complement(1197050..1197142) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950892 YP_002924093.1 CDS HDEF_1293 NC_012751.1 1197132 1197293 R hypothetical protein complement(1197132..1197293) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950893 YP_002924094.1 CDS HDEF_1294 NC_012751.1 1197377 1197901 R N terminal truncation; COG3468; type V secretory pathway, adhesin complement(1197377..1197901) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950894 YP_002924095.1 CDS HDEF_1295 NC_012751.1 1197996 1198400 R ISHde1, transposase complement(1197996..1198400) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950895 YP_002924096.1 CDS HDEF_1296 NC_012751.1 1198441 1198818 R ISHde1, transposase complement(1198441..1198818) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950896 YP_002924097.1 CDS HDEF_1298 NC_012751.1 1201126 1210905 D pertactin 1201126..1210905 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950898 YP_002924098.1 CDS HDEF_1299 NC_012751.1 1210906 1211163 D hypothetical protein 1210906..1211163 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950899 YP_002924099.1 CDS HDEF_1300 NC_012751.1 1211160 1211753 D N terminal truncation; COG3468; hypothetical protein 1211160..1211753 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950900 YP_002924100.1 CDS radA NC_012751.1 1211828 1213210 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1211828..1213210) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950901 YP_002924101.1 CDS HDEF_1302 NC_012751.1 1213383 1215149 R hypothetical protein complement(1213383..1215149) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950902 YP_002924102.1 CDS HDEF_1303 NC_012751.1 1215285 1215434 R hypothetical protein complement(1215285..1215434) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950903 YP_002924103.1 CDS HDEF_1305 NC_012751.1 1215609 1216376 D COG0500; methyltransferase 1215609..1216376 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950905 YP_002924104.1 CDS HDEF_1306 NC_012751.1 1216380 1217354 D COG0500; methyltransferase 1216380..1217354 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950906 YP_002924105.1 CDS acnA NC_012751.1 1217617 1220283 R COG1048; aconitate hydratase 1 complement(1217617..1220283) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950907 YP_002924106.1 CDS dxr NC_012751.1 1220912 1222099 R COG0743; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1220912..1222099) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950908 YP_002924107.1 CDS frr NC_012751.1 1222205 1222762 R COG0233; ribosome recycling factor complement(1222205..1222762) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950909 YP_002924108.1 CDS pyrH NC_012751.1 1222815 1223546 R COG0528; uridylate kinase complement(1222815..1223546) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950910 YP_002924109.1 CDS tsf NC_012751.1 1223551 1224411 R COG0264; protein chain elongation factor EF-Ts complement(1223551..1224411) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950911 YP_002924110.1 CDS rpsB NC_012751.1 1224453 1225178 R COG0052; 30S ribosomal subunit protein S2 complement(1224453..1225178) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950912 YP_002924111.1 CDS pldA NC_012751.1 1225757 1226647 R catalyzes the hydrolysis of phosphatidylcholine; phospholipase A complement(1225757..1226647) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950913 YP_002924112.1 CDS HDEF_1314 NC_012751.1 1227304 1227396 D ISHde2, transposase 1227304..1227396 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950914 YP_002924113.1 CDS HDEF_1322 NC_012751.1 1234355 1235095 D COG5464; transposase 1234355..1235095 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951959 YP_002924114.1 CDS mpg_2 NC_012751.1 1235099 1235611 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1235099..1235611 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950923 YP_002924115.1 CDS HDEF_1325 NC_012751.1 1235999 1236136 R hypothetical protein complement(1235999..1236136) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950924 YP_002924116.1 CDS HDEF_1324 NC_012751.1 1236107 1236727 D transcriptional regulator 1236107..1236727 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950926 YP_002924117.1 CDS HDEF_1326 NC_012751.1 1237017 1237112 D hypothetical protein 1237017..1237112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950925 YP_002924118.1 CDS HDEF_1327 NC_012751.1 1237155 1237361 R hypothetical protein complement(1237155..1237361) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950927 YP_002924119.1 CDS HDEF_1328 NC_012751.1 1237574 1237891 D hypothetical protein 1237574..1237891 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950928 YP_002924120.1 CDS HDEF_1329 NC_012751.1 1237916 1238143 D hypothetical protein 1237916..1238143 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950929 YP_002924121.1 CDS triB NC_012751.1 1238649 1238924 D TriB conjugal transfer protein 1238649..1238924 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950931 YP_002924122.1 CDS triD NC_012751.1 1241699 1242445 D TriD conjugal transfer protein 1241699..1242445 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950933 YP_002924123.1 CDS HDEF_1334 NC_012751.1 1242442 1242729 D addiction module 1242442..1242729 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950934 YP_002924124.1 CDS triE NC_012751.1 1242803 1243777 D TriE conjugal transfer protein 1242803..1243777 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950935 YP_002924125.1 CDS HDEF_1336 NC_012751.1 1243835 1244431 R COG1961; Tn5501-like resolvase complement(1243835..1244431) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950936 YP_002924126.1 CDS HDEF_1337 NC_012751.1 1244616 1244723 R hypothetical protein complement(1244616..1244723) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950937 YP_002924127.1 CDS triG NC_012751.1 1244785 1245477 D TriG conjugal transfer protein 1244785..1245477 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950938 YP_002924128.1 CDS triH NC_012751.1 1245480 1246409 D TriH conjugal transfer protein 1245480..1246409 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950939 YP_002924129.1 CDS triI NC_012751.1 1246574 1247785 D TriI conjugal transfer protein 1246574..1247785 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950940 YP_002924130.1 CDS triJ NC_012751.1 1247782 1248813 D TriJ conjugal transfer protein 1247782..1248813 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950941 YP_002924131.1 CDS taxB NC_012751.1 1248800 1250653 D TaxB conjugal transfer protein 1248800..1250653 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950942 YP_002924132.1 CDS HDEF_1343 NC_012751.1 1250696 1251613 D hypothetical protein 1250696..1251613 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950943 YP_002924133.1 CDS HDEF_1344 NC_012751.1 1251700 1252077 D ISHde1, transposase 1251700..1252077 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950944 YP_002924134.1 CDS HDEF_1345 NC_012751.1 1252118 1252522 D ISHde1, transposase 1252118..1252522 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950945 YP_002924135.1 CDS pilM_2 NC_012751.1 1252547 1252963 D PilM type IV pilus biogenesis protein 1252547..1252963 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950946 YP_002924136.1 CDS pilN_3 NC_012751.1 1253062 1254702 D PilN type IV pilus biogenesis outer membrane protein 1253062..1254702 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950947 YP_002924137.1 CDS pilO_2 NC_012751.1 1254702 1255994 D PilO type IV pilus biogenesis outer membrane protein 1254702..1255994 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950948 YP_002924138.1 CDS HDEF_1349 NC_012751.1 1255981 1256445 D type IV pilus protein 1255981..1256445 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950949 YP_002924139.1 CDS pilQ_3 NC_012751.1 1256463 1257971 D PilQ type IV pilus biogenesis protein ATPase 1256463..1257971 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950950 YP_002924140.1 CDS ibp NC_012751.1 1258010 1258489 R COG0071; heat shock chaperone complement(1258010..1258489) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950951 YP_002924141.1 CDS pilV_2 NC_012751.1 1258514 1260004 D PilV type IV pilus minor pilin subunit, shufflon protein 1258514..1260004 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950952 YP_002924142.1 CDS stbC_1 NC_012751.1 1260157 1260465 R plasmid stability protein StbC complement(1260157..1260465) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950953 YP_002924143.1 CDS stbB_2 NC_012751.1 1260467 1261183 R plasmid stability protein StbB complement(1260467..1261183) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950954 YP_002924144.1 CDS stbA NC_012751.1 1261192 1261512 R plasmid stability protein StbA complement(1261192..1261512) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950955 YP_002924145.1 CDS HDEF_1356 NC_012751.1 1261631 1261756 D hypothetical protein 1261631..1261756 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950956 YP_002924146.1 CDS HDEF_1357 NC_012751.1 1262556 1262651 R hypothetical protein complement(1262556..1262651) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950957 YP_002924147.1 CDS repA_4 NC_012751.1 1262692 1263576 D plasmid replication initiator protein 1262692..1263576 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950958 YP_002924148.1 CDS HDEF_1360 NC_012751.1 1264002 1264328 R hypothetical protein complement(1264002..1264328) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950960 YP_002924149.1 CDS HDEF_1361 NC_012751.1 1264335 1264436 R hypothetical protein complement(1264335..1264436) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950961 YP_002924150.1 CDS repA_5 NC_012751.1 1264433 1265386 R plasmid replication initiator protein complement(1264433..1265386) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950962 YP_002924151.1 CDS pilQ_4 NC_012751.1 1266432 1266971 R C terminal truncation; PilQ type IV pilus protein complement(1266432..1266971) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950964 YP_002924152.1 CDS HDEF_1366 NC_012751.1 1267417 1267746 R addiction module toxin complement(1267417..1267746) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950965 YP_002924153.1 CDS HDEF_1367 NC_012751.1 1267748 1267975 R addiction module antitoxin complement(1267748..1267975) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950967 YP_002924154.1 CDS HDEF_1369 NC_012751.1 1269375 1269494 D hypothetical protein 1269375..1269494 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950969 YP_002924155.1 CDS HDEF_1370 NC_012751.1 1269638 1271140 R hypothetical protein complement(1269638..1271140) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950970 YP_002924156.1 CDS HDEF_1371 NC_012751.1 1271624 1272028 R ISHde1, transposase complement(1271624..1272028) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950971 YP_002924157.1 CDS HDEF_1372 NC_012751.1 1272069 1272446 R ISHde1, transposase complement(1272069..1272446) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950972 YP_002924158.1 CDS HDEF_1373 NC_012751.1 1272578 1272763 D N terminal truncation; COG5464; hypothetical protein 1272578..1272763 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950973 YP_002924159.1 CDS HDEF_1374 NC_012751.1 1272948 1273313 R N terminus, interrupted by GII intron; COG0371; glycerol dehydrogenase complement(1272948..1273313) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950974 YP_002924160.1 CDS HDEF_1375 NC_012751.1 1273736 1275418 D reverse transcriptase 1273736..1275418 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951960 YP_002924161.1 CDS HDEF_1377 NC_012751.1 1276641 1276793 R hypothetical protein complement(1276641..1276793) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950977 YP_002924162.1 CDS cro_1 NC_012751.1 1276911 1277213 R COG1396; phage transcriptional regulatory protein complement(1276911..1277213) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950978 YP_002924163.1 CDS HDEF_1380 NC_012751.1 1277655 1277801 D hypothetical protein 1277655..1277801 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950980 YP_002924164.1 CDS HDEF_1381 NC_012751.1 1277841 1278167 R C terminal truncation; COG5464; transposase complement(1277841..1278167) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950981 YP_002924165.1 CDS HDEF_1382 NC_012751.1 1278692 1279195 R COG0454; GCN5-related N-acetyltransferase complement(1278692..1279195) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950982 YP_002924166.1 CDS HDEF_1383 NC_012751.1 1279192 1279464 R COG4453; hypothetical protein complement(1279192..1279464) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950983 YP_002924167.1 CDS HDEF_1384 NC_012751.1 1279792 1279962 R hypothetical protein complement(1279792..1279962) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950984 YP_002924168.1 CDS mutL_2 NC_012751.1 1281334 1283106 D COG0323; enzyme in methyl-directed mismatch repair 1281334..1283106 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950986 YP_002924169.1 CDS HDEF_1387 NC_012751.1 1283118 1283213 D hypothetical protein 1283118..1283213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950987 YP_002924170.1 CDS HDEF_1389 NC_012751.1 1283538 1283684 R hypothetical protein complement(1283538..1283684) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950989 YP_002924171.1 CDS HDEF_1390 NC_012751.1 1284095 1284229 D hypothetical protein 1284095..1284229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950990 YP_002924172.1 CDS HDEF_1391 NC_012751.1 1284283 1284768 D hypothetical protein 1284283..1284768 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950991 YP_002924173.1 CDS chpB NC_012751.1 1285562 1285903 R COG2337; addiction module, toxin ChpB complement(1285562..1285903) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950993 YP_002924174.1 CDS chpS NC_012751.1 1285903 1286154 R COG2336; addiction module, antitoxin ChpS complement(1285903..1286154) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950994 YP_002924175.1 CDS HDEF_1395 NC_012751.1 1286539 1287180 R COG1961; resolvase complement(1286539..1287180) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950995 YP_002924176.1 CDS HDEF_1396 NC_012751.1 1287304 1287438 R hypothetical protein complement(1287304..1287438) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950996 YP_002924177.1 CDS HDEF_1397 NC_012751.1 1287568 1287663 R hypothetical protein complement(1287568..1287663) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950997 YP_002924178.1 CDS HDEF_1398 NC_012751.1 1287816 1288445 D plasmid partition protein ParA-like protein 1287816..1288445 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950998 YP_002924179.1 CDS HDEF_1399 NC_012751.1 1288485 1288715 D partitioning protein 1288485..1288715 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950999 YP_002924180.1 CDS msrB_1 NC_012751.1 1289009 1289428 D COG0229; methionine sulfoxide reductase 1289009..1289428 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951000 YP_002924181.1 CDS HDEF_1401 NC_012751.1 1289783 1289899 D hypothetical protein 1289783..1289899 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951001 YP_002924182.1 CDS HDEF_1402 NC_012751.1 1290035 1290271 D hypothetical protein 1290035..1290271 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951002 YP_002924183.1 CDS rtxA_20 NC_012751.1 1290310 1290906 R Possible N terminal truncation, paired with HDEF_1404 and HDEF_1405; RTX-family protein-20 complement(1290310..1290906) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951003 YP_002924184.1 CDS rtxA_19 NC_012751.1 1290863 1291837 R Possible C and N terminal truncations with HDEF_1403 and HDEF_1405; RTX-family protein-19 complement(1290863..1291837) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951004 YP_002924185.1 CDS rtxA_18 NC_012751.1 1291813 1295676 R Possible C terminal truncation, paired with HDEF_1403 and HDEF_1404; RTX-family protein-18 complement(1291813..1295676) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951005 YP_002924186.1 CDS HDEF_1406 NC_012751.1 1296057 1296167 D hypothetical protein 1296057..1296167 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951006 YP_002924187.1 CDS mobB_4 NC_012751.1 1296568 1296876 D MobB relaxase/mobilization protein 1296568..1296876 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951007 YP_002924188.1 CDS mobA_4 NC_012751.1 1296877 1298769 D MobA relaxase/mobilization protein 1296877..1298769 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951008 YP_002924189.1 CDS hu NC_012751.1 1298900 1299259 D COG0776; DNA-binding protein HU-alpha (HU-2) 1298900..1299259 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951009 YP_002924190.1 CDS HDEF_1412 NC_012751.1 1302064 1302531 D N terminal truncation; COG5464; transposase 1302064..1302531 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951012 YP_002924191.1 CDS finO_2 NC_012751.1 1302553 1303104 D conjugal transfer fertility inhibition protein 1302553..1303104 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951013 YP_002924192.1 CDS trbC_3 NC_012751.1 1303111 1304178 R C terminus, interrupted by GII intron; TrbC conjugal transfer protein complement(1303111..1304178) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951014 YP_002924193.1 CDS HDEF_1415 NC_012751.1 1304601 1306283 D reverse transcriptase 1304601..1306283 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951962 YP_002924194.1 CDS traK_2 NC_012751.1 1306478 1306738 R TraK conjugal transfer protein complement(1306478..1306738) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951017 YP_002924195.1 CDS traJ_2 NC_012751.1 1306800 1307951 R TraJ conjugal transfer protein complement(1306800..1307951) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951018 YP_002924196.1 CDS traI_2 NC_012751.1 1307938 1308747 R TraI conjugal transfer protein complement(1307938..1308747) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951019 YP_002924197.1 CDS traH_2 NC_012751.1 1308744 1309187 R TraH conjugal transfer protein complement(1308744..1309187) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951020 YP_002924198.1 CDS pilT_4 NC_012751.1 1309241 1309711 R COG0741; PilT lytic transglycosylase complement(1309241..1309711) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951021 YP_002924199.1 CDS HDEF_1422 NC_012751.1 1309754 1310374 R type IV pilus leader peptidase complement(1309754..1310374) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951022 YP_002924200.1 CDS pilM_3 NC_012751.1 1310380 1310811 R PilM type IV pilus biogenesis protein complement(1310380..1310811) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951023 YP_002924201.1 CDS pilV_3 NC_012751.1 1310861 1312225 R PilV type IV pilus minor pilin subunit, shufflon protein complement(1310861..1312225) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951024 YP_002924202.1 CDS pilS2_2 NC_012751.1 1312478 1312987 R PilS2 type IV pilus biosynthesis protein complement(1312478..1312987) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951025 YP_002924203.1 CDS pilQ_5 NC_012751.1 1314049 1315596 R PilQ type IV pilus biogenesis protein ATPase complement(1314049..1315596) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951027 YP_002924204.1 CDS pilP_2 NC_012751.1 1315593 1316003 R type IV pilus protein complement(1315593..1316003) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951028 YP_002924205.1 CDS pilO_3 NC_012751.1 1315990 1317300 R PilO type IV pilus biogenesis outer membrane protein complement(1315990..1317300) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951029 YP_002924206.1 CDS HDEF_1431 NC_012751.1 1317725 1318063 D addiction module antitoxin 1317725..1318063 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951031 YP_002924207.1 CDS pilL_2 NC_012751.1 1319633 1319938 R N terminal truncation; PilL type IV pilus biogenesis protein complement(1319633..1319938) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951033 YP_002924208.1 CDS HDEF_1434 NC_012751.1 1320212 1320370 R hypothetical protein complement(1320212..1320370) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951034 YP_002924209.1 CDS HDEF_1435 NC_012751.1 1320566 1321030 R NusG-type transcription antiterminator complement(1320566..1321030) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951035 YP_002924210.1 CDS HDEF_1436 NC_012751.1 1321183 1321407 R hypothetical protein complement(1321183..1321407) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951036 YP_002924211.1 CDS HDEF_1437 NC_012751.1 1321611 1322015 R ISHde1, transposase complement(1321611..1322015) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951037 YP_002924212.1 CDS HDEF_1438 NC_012751.1 1322056 1322433 R ISHde1, transposase complement(1322056..1322433) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951038 YP_002924213.1 CDS HDEF_1439 NC_012751.1 1322484 1323347 R C terminal truncation; COG4653; phage capsid protein complement(1322484..1323347) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951039 YP_002924214.1 CDS HDEF_1440 NC_012751.1 1323358 1323957 R COG3740; phage capsid protease complement(1323358..1323957) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951040 YP_002924215.1 CDS HDEF_1441 NC_012751.1 1323950 1325188 R COG4695; phage portal protein complement(1323950..1325188) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951041 YP_002924216.1 CDS HDEF_1442 NC_012751.1 1325178 1325339 R hypothetical protein complement(1325178..1325339) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951042 YP_002924217.1 CDS HDEF_1443 NC_012751.1 1325398 1325775 D ISHde1, transposase 1325398..1325775 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951043 YP_002924218.1 CDS HDEF_1444 NC_012751.1 1325816 1326220 D ISHde1, transposase 1325816..1326220 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951044 YP_002924219.1 CDS HDEF_1445 NC_012751.1 1326240 1327997 R phage terminase, large subunit complement(1326240..1327997) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951045 YP_002924220.1 CDS HDEF_1446 NC_012751.1 1327997 1328473 R phage terminase, small subunit complement(1327997..1328473) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951046 YP_002924221.1 CDS HDEF_1447 NC_012751.1 1328688 1328945 D COG3077; addiction module antitoxin 1328688..1328945 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951047 YP_002924222.1 CDS HDEF_1448 NC_012751.1 1328932 1329213 D COG3041; addiction module toxin 1328932..1329213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951048 YP_002924223.1 CDS HDEF_1449 NC_012751.1 1329256 1329705 D hypothetical protein 1329256..1329705 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951049 YP_002924224.1 CDS HDEF_1450 NC_012751.1 1329503 1329916 R hypothetical protein complement(1329503..1329916) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951050 YP_002924225.1 CDS HDEF_1451 NC_012751.1 1329917 1330285 R COG1403; hypothetical protein complement(1329917..1330285) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951051 YP_002924226.1 CDS HDEF_1452 NC_012751.1 1330266 1330595 R hypothetical protein complement(1330266..1330595) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951052 YP_002924227.1 CDS HDEF_1453 NC_012751.1 1330612 1330920 R hypothetical protein complement(1330612..1330920) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951053 YP_002924228.1 CDS HDEF_1454 NC_012751.1 1330917 1331246 R hypothetical protein complement(1330917..1331246) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951054 YP_002924229.1 CDS HDEF_1455 NC_012751.1 1331233 1331730 R phage lysis protein, endopeptidase complement(1331233..1331730) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951055 YP_002924230.1 CDS HDEF_1456 NC_012751.1 1331730 1332440 R phage protein KilA complement(1331730..1332440) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951056 YP_002924231.1 CDS HDEF_1457 NC_012751.1 1332792 1332998 R hypothetical protein complement(1332792..1332998) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951057 YP_002924232.1 CDS HDEF_1458 NC_012751.1 1333020 1333547 R phage anti-repressor protein complement(1333020..1333547) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951058 YP_002924233.1 CDS HDEF_1459 NC_012751.1 1333722 1334219 R COG3772; phage lysozyme complement(1333722..1334219) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951059 YP_002924234.1 CDS HDEF_1460 NC_012751.1 1334212 1334403 R hypothetical protein complement(1334212..1334403) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951060 YP_002924235.1 CDS HDEF_1461 NC_012751.1 1334555 1334959 R ISHde1, transposase complement(1334555..1334959) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951061 YP_002924236.1 CDS HDEF_1462 NC_012751.1 1335000 1335377 R ISHde1, transposase complement(1335000..1335377) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951062 YP_002924237.1 CDS HDEF_1463 NC_012751.1 1335432 1335644 R C terminal truncation; COG0388; hypothetical protein complement(1335432..1335644) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951063 YP_002924238.1 CDS codB_2 NC_012751.1 1335692 1336963 D cytosine transport protein (NCS1 family) 1335692..1336963 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951064 YP_002924239.1 CDS HDEF_1467 NC_012751.1 1339125 1339244 D hypothetical protein 1339125..1339244 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951067 YP_002924240.1 CDS HDEF_1468 NC_012751.1 1339388 1340890 R hypothetical protein complement(1339388..1340890) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951068 YP_002924241.1 CDS HDEF_1469 NC_012751.1 1341303 1341434 D hypothetical protein 1341303..1341434 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951069 YP_002924242.1 CDS fbp_2 NC_012751.1 1341447 1341773 D N and C terminal truncations; COG0158; fructose-bisphosphatase 1341447..1341773 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951070 YP_002924243.1 CDS HDEF_1471 NC_012751.1 1341781 1344738 R pertactin complement(1341781..1344738) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951071 YP_002924244.1 CDS HDEF_1472 NC_012751.1 1344751 1344864 R hypothetical protein complement(1344751..1344864) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951072 YP_002924245.1 CDS HDEF_1473 NC_012751.1 1345514 1345765 D hypothetical protein 1345514..1345765 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951073 YP_002924246.1 CDS HDEF_1474 NC_012751.1 1345762 1346697 D COG5464; transposase 1345762..1346697 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951074 YP_002924247.1 CDS HDEF_1475 NC_012751.1 1346698 1346844 D hypothetical protein 1346698..1346844 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951075 YP_002924248.1 CDS HDEF_1476 NC_012751.1 1346719 1346877 R hypothetical protein complement(1346719..1346877) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951076 YP_002924249.1 CDS HDEF_1477 NC_012751.1 1347265 1350501 D extracellular metallopeptidase 1347265..1350501 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951077 YP_002924250.1 CDS HDEF_1478 NC_012751.1 1350921 1351820 D COG5464; transposase 1350921..1351820 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951078 YP_002924251.1 CDS degP_1 NC_012751.1 1352010 1353302 D COG0265; serine endoprotease (protease Do), membrane-associated 1352010..1353302 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951079 YP_002924252.1 CDS proQ_1 NC_012751.1 1353644 1354042 D C terminal truncation; COG3109; structural transport element 1353644..1354042 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951080 YP_002924253.1 CDS prc_1 NC_012751.1 1354042 1356135 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1354042..1356135 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951081 YP_002924254.1 CDS htpX_1 NC_012751.1 1356188 1357066 D COG0501; heat shock protein, integral membrane protein 1356188..1357066 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951082 YP_002924255.1 CDS amiD_1 NC_012751.1 1357153 1357977 D COG3023; amidase and lipoprotein 1357153..1357977 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951083 YP_002924256.1 CDS amiD_2 NC_012751.1 1358167 1358991 R COG3023; amidase and lipoprotein complement(1358167..1358991) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951084 YP_002924257.1 CDS htpX_2 NC_012751.1 1359078 1359956 R COG0501; heat shock protein, integral membrane protein complement(1359078..1359956) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951085 YP_002924258.1 CDS prc_2 NC_012751.1 1360009 1362102 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1360009..1362102) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951086 YP_002924259.1 CDS proQ_2 NC_012751.1 1362102 1362500 R C terminal truncation; COG3109; structural transport element complement(1362102..1362500) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951087 YP_002924260.1 CDS degP_2 NC_012751.1 1362842 1364269 R COG0265; serine endoprotease (protease Do), membrane-associated complement(1362842..1364269) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951088 YP_002924261.1 CDS dgt NC_012751.1 1364407 1365894 R forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase complement(1364407..1365894) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951089 YP_002924262.1 CDS mtn NC_012751.1 1366013 1366726 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1366013..1366726 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951090 YP_002924263.1 CDS HDEF_1491 NC_012751.1 1366791 1367144 D COG0278; glutaredoxin 1366791..1367144 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951091 YP_002924264.1 CDS dnaQ_2 NC_012751.1 1367150 1367815 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(1367150..1367815) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951092 YP_002924265.1 CDS hilA NC_012751.1 1368032 1368859 R C terminal truncation; invasion protein transcriptional regulator complement(1368032..1368859) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951093 YP_002924266.1 CDS HDEF_1494 NC_012751.1 1368999 1369340 R hypothetical protein complement(1368999..1369340) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951094 YP_002924267.1 CDS orfC NC_012751.1 1369381 1369746 D hypothetical protein 1369381..1369746 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951095 YP_002924268.1 CDS invF NC_012751.1 1369957 1370727 D type III invasion regulatory protein 1369957..1370727 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951096 YP_002924269.1 CDS invG NC_012751.1 1370746 1372407 D COG1450; type III outer membrane secretin precursor 1370746..1372407 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951097 YP_002924270.1 CDS invE NC_012751.1 1372404 1373618 D type III invasion protein 1372404..1373618 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951098 YP_002924271.1 CDS invA NC_012751.1 1373636 1375690 D COG4789; type III needle complex export protein 1373636..1375690 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951099 YP_002924272.1 CDS invB NC_012751.1 1375713 1376138 D type III secretion chaperone 1375713..1376138 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951100 YP_002924273.1 CDS invC NC_012751.1 1376138 1377433 D Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase; ATP synthase SpaL 1376138..1377433 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951101 YP_002924274.1 CDS spaM NC_012751.1 1377417 1377872 D type III needle complex assembly protein 1377417..1377872 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951102 YP_002924275.1 CDS spaN NC_012751.1 1377857 1378945 D weakly similar and syntenic to spaN of SPI-1; type III surface presentation of antigens protein 1377857..1378945 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951103 YP_002924276.1 CDS HDEF_1504 NC_012751.1 1378942 1379112 D hypothetical protein 1378942..1379112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951104 YP_002924277.1 CDS spaO NC_012751.1 1379290 1379979 D type III surface presentation of antigens protein 1379290..1379979 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951105 YP_002924278.1 CDS spaP NC_012751.1 1379991 1380656 D part of a type III secretory system probably involved in invasion into eukaryotic cells; surface presentation of antigens protein SpaP 1379991..1380656 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951106 YP_002924279.1 CDS spaQ NC_012751.1 1380673 1380933 D COG4794; type III needle complex export protein 1380673..1380933 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951107 YP_002924280.1 CDS spaR NC_012751.1 1380936 1381700 D COG4791; type III needle complex export protein 1380936..1381700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951108 YP_002924281.1 CDS spaS NC_012751.1 1381876 1382925 D Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins; surface presentation of antigens protein SpaS 1381876..1382925 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951109 YP_002924282.1 CDS sicA NC_012751.1 1383030 1383548 D COG0457; type III secretion chaperone 1383030..1383548 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951110 YP_002924283.1 CDS sipB NC_012751.1 1383750 1385168 D type III translocation machinery component 1383750..1385168 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951111 YP_002924284.1 CDS HDEF_1512 NC_012751.1 1385199 1386482 D hypothetical protein 1385199..1386482 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951112 YP_002924285.1 CDS HDEF_1513 NC_012751.1 1386562 1388223 D hypothetical protein 1386562..1388223 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951113 YP_002924286.1 CDS HDEF_1514 NC_012751.1 1388175 1389392 D hypothetical protein 1388175..1389392 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951114 YP_002924287.1 CDS gyrA NC_012751.1 1390057 1392591 R COG0188; DNA gyrase (type II topoisomerase), subunit A complement(1390057..1392591) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951116 YP_002924288.1 CDS ubiG NC_012751.1 1392722 1393453 D COG2227; bifunctional 3-demethylubiquinone-9 3-methyltransferase; 2-octaprenyl-6-hydroxy phenol methylase 1392722..1393453 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951117 YP_002924289.1 CDS rffA NC_012751.1 1393485 1394615 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(1393485..1394615) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951118 YP_002924290.1 CDS arcB NC_012751.1 1394612 1396444 R hybrid sensory histidine kinase in two-component regulatory system with ArcA, regulates respiration and fermentation, senses oxidized quinones complement(1394612..1396444) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951119 YP_002924291.1 CDS dsbB NC_012751.1 1396531 1397055 D COG1495; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I 1396531..1397055 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951120 YP_002924292.1 CDS hupA_3 NC_012751.1 1397336 1397680 D COG0776; HU, DNA-binding transcriptional regulator, alpha subunit -3 1397336..1397680 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951121 YP_002924293.1 CDS queF NC_012751.1 1397876 1398718 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1397876..1398718 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951122 YP_002924294.1 CDS HDEF_1523 NC_012751.1 1398767 1398943 D hypothetical protein 1398767..1398943 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951123 YP_002924295.1 CDS speA NC_012751.1 1398940 1400841 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1398940..1400841 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951124 YP_002924296.1 CDS tktB NC_012751.1 1400899 1402908 D COG0021; transketolase 2, thiamin-binding, isozyme 1400899..1402908 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951125 YP_002924297.1 CDS HDEF_1526 NC_012751.1 1403117 1404253 D hypothetical protein 1403117..1404253 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951126 YP_002924298.1 CDS uvrY NC_012751.1 1404828 1405484 D COG2197; UvrY transcriptional regulator 1404828..1405484 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951128 YP_002924299.1 CDS uvrC NC_012751.1 1405485 1407308 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1405485..1407308 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951129 YP_002924300.1 CDS pgsA NC_012751.1 1407522 1408070 D COG0558; phosphatidylglycerophosphate synthetase 1407522..1408070 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951130 YP_002924301.1 CDS HDEF_1534 NC_012751.1 1408659 1408775 D hypothetical protein 1408659..1408775 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951134 YP_002924302.1 CDS HDEF_1535 NC_012751.1 1408756 1408908 R hypothetical protein complement(1408756..1408908) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951135 YP_002924303.1 CDS ssb NC_012751.1 1409002 1409547 R COG0629; single-stranded DNA-binding protein complement(1409002..1409547) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951136 YP_002924304.1 CDS HDEF_1537 NC_012751.1 1409704 1409799 R hypothetical protein complement(1409704..1409799) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951137 YP_002924305.1 CDS cca NC_012751.1 1409831 1411048 R COG0617; fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase complement(1409831..1411048) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951138 YP_002924306.1 CDS fbaA NC_012751.1 1411049 1412140 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(1411049..1412140) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951139 YP_002924307.1 CDS pgk NC_012751.1 1412203 1413393 R COG0126; phosphoglycerate kinase complement(1412203..1413393) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951140 YP_002924308.1 CDS sixA NC_012751.1 1413725 1414198 D COG2062; phosphohistidine phosphatase 1413725..1414198 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951141 YP_002924309.1 CDS cysS NC_012751.1 1414220 1415605 R COG0215; cysteinyl-tRNA synthetase complement(1414220..1415605) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951142 YP_002924310.1 CDS HDEF_1544 NC_012751.1 1415694 1415795 R hypothetical protein complement(1415694..1415795) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951143 YP_002924311.1 CDS lpxH NC_012751.1 1415715 1416482 D COG2908; UDP-2,3-diacylglucosamine pyrophosphatase 1415715..1416482 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951145 YP_002924312.1 CDS dsbA NC_012751.1 1416521 1417162 D COG0526; periplasmic protein disulfide isomerase I 1416521..1417162 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951144 YP_002924313.1 CDS HDEF_1546 NC_012751.1 1417456 1418919 R hypothetical protein complement(1417456..1418919) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951146 YP_002924314.1 CDS HDEF_1548 NC_012751.1 1419729 1419902 R hypothetical protein complement(1419729..1419902) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951148 YP_002924315.1 CDS HDEF_1549 NC_012751.1 1419993 1420667 D N terminal truncation; hypothetical protein 1419993..1420667 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951149 YP_002924316.1 CDS HDEF_1550 NC_012751.1 1420798 1420944 R hypothetical protein complement(1420798..1420944) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951150 YP_002924317.1 CDS HDEF_1551 NC_012751.1 1420952 1421215 D hypothetical protein 1420952..1421215 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951151 YP_002924318.1 CDS HDEF_1552 NC_012751.1 1421340 1421441 D hypothetical protein 1421340..1421441 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951152 YP_002924319.1 CDS HDEF_1553 NC_012751.1 1421383 1421487 D hypothetical protein 1421383..1421487 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951153 YP_002924320.1 CDS HDEF_1555 NC_012751.1 1422147 1422242 D hypothetical protein 1422147..1422242 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951155 YP_002924321.1 CDS HDEF_1556 NC_012751.1 1422242 1422436 D N terminal truncation; COG5464; transposase 1422242..1422436 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951156 YP_002924322.1 CDS HDEF_1558 NC_012751.1 1423122 1423790 R N terminal truncation; IS4-like transposase complement(1423122..1423790) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951158 YP_002924323.1 CDS HDEF_1559 NC_012751.1 1423923 1424132 D hypothetical protein 1423923..1424132 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951161 YP_002924324.1 CDS HDEF_1561 NC_012751.1 1423984 1424211 R hypothetical protein complement(1423984..1424211) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951160 YP_002924325.1 CDS HDEF_1562 NC_012751.1 1424633 1424725 D hypothetical protein 1424633..1424725 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951162 YP_002924326.1 CDS HDEF_1563 NC_012751.1 1424736 1426232 D hypothetical protein 1424736..1426232 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951163 YP_002924327.1 CDS HDEF_1565 NC_012751.1 1426317 1426487 R N terminal truncation; COG5525; tail fiber assembly protein complement(1426317..1426487) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951164 YP_002924328.1 CDS HDEF_1564 NC_012751.1 1426452 1426616 D hypothetical protein 1426452..1426616 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951166 YP_002924329.1 CDS HDEF_1566 NC_012751.1 1426682 1427092 R phage tail protein complement(1426682..1427092) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951165 YP_002924330.1 CDS HDEF_1567 NC_012751.1 1427109 1427219 R hypothetical protein complement(1427109..1427219) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951167 YP_002924331.1 CDS HDEF_1568 NC_012751.1 1427528 1428004 R N terminal truncation; glycosyl hydrolase family protein complement(1427528..1428004) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951168 YP_002924332.1 CDS HDEF_1569 NC_012751.1 1428064 1428276 D hypothetical protein 1428064..1428276 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951169 YP_002924333.1 CDS HDEF_1570 NC_012751.1 1428335 1428634 D COG2963; ISHde3, transposase 1428335..1428634 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951170 YP_002924334.1 CDS HDEF_1571 NC_012751.1 1428644 1428763 D hypothetical protein 1428644..1428763 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951171 YP_002924335.1 CDS HDEF_1572 NC_012751.1 1429030 1429653 D pentapeptide repeat-containing protein 1429030..1429653 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951172 YP_002924336.1 CDS HDEF_1573 NC_012751.1 1429674 1430006 R hypothetical protein complement(1429674..1430006) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951173 YP_002924337.1 CDS HDEF_1574 NC_012751.1 1430041 1430268 R hypothetical protein complement(1430041..1430268) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951174 YP_002924338.1 CDS HDEF_1575 NC_012751.1 1430629 1431237 D phage repressor protein 1430629..1431237 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951175 YP_002924339.1 CDS HDEF_1576 NC_012751.1 1431667 1431780 D hypothetical protein 1431667..1431780 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951176 YP_002924340.1 CDS HDEF_1577 NC_012751.1 1431886 1432347 R similar to APSE protein P47; hypothetical protein complement(1431886..1432347) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951177 YP_002924341.1 CDS HDEF_1578 NC_012751.1 1432417 1432569 R hypothetical protein complement(1432417..1432569) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951178 YP_002924342.1 CDS HDEF_1579 NC_012751.1 1432581 1432679 D hypothetical protein 1432581..1432679 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951179 YP_002924343.1 CDS HDEF_1580 NC_012751.1 1432676 1433047 D C terminal truncation, similar to APSE protein P43; COG3617; antirepressor 1432676..1433047 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951180 YP_002924344.1 CDS HDEF_1581 NC_012751.1 1433089 1433199 D hypothetical protein 1433089..1433199 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951181 YP_002924345.1 CDS HDEF_1582 NC_012751.1 1433199 1433462 D C terminal truncation; phage integrase 1433199..1433462 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951182 YP_002924346.1 CDS HDEF_1584 NC_012751.1 1434449 1434766 R C terminal truncation; COG3561; phage anti-repressor protein complement(1434449..1434766) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951184 YP_002924347.1 CDS HDEF_1585 NC_012751.1 1434884 1435654 R phage antirepressor complement(1434884..1435654) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951185 YP_002924348.1 CDS HDEF_1586 NC_012751.1 1435758 1435850 R hypothetical protein complement(1435758..1435850) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951186 YP_002924349.1 CDS HDEF_1587 NC_012751.1 1435932 1436723 R phage anti-repressor protein complement(1435932..1436723) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951187 YP_002924350.1 CDS HDEF_1588 NC_012751.1 1436911 1437288 R hypothetical protein complement(1436911..1437288) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951188 YP_002924351.1 CDS HDEF_1589 NC_012751.1 1437531 1438046 R COG1525; SNase-like micrococcal nuclease complement(1437531..1438046) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951189 YP_002924352.1 CDS HDEF_1590 NC_012751.1 1438074 1438208 R hypothetical protein complement(1438074..1438208) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951190 YP_002924353.1 CDS HDEF_1591 NC_012751.1 1438202 1438729 R phage-related exonuclease complement(1438202..1438729) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951191 YP_002924354.1 CDS HDEF_1592 NC_012751.1 1439490 1442108 D restriction endonuclease 1439490..1442108 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951192 YP_002924355.1 CDS sdaC NC_012751.1 1443897 1445201 R COG0814; serine transport protein (HAAAP family) complement(1443897..1445201) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951195 YP_002924356.1 CDS nth NC_012751.1 1445505 1446152 R COG0177; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) complement(1445505..1446152) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951196 YP_002924357.1 CDS HDEF_1597 NC_012751.1 1446231 1446377 R hypothetical protein complement(1446231..1446377) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951197 YP_002924358.1 CDS birA NC_012751.1 1446374 1447330 R COG0340; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase; transcriptional repressor of biotin synthesis (BirA family) complement(1446374..1447330) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951198 YP_002924359.1 CDS murB NC_012751.1 1447327 1448358 R COG0812; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding complement(1447327..1448358) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951199 YP_002924360.1 CDS HDEF_1600 NC_012751.1 1448459 1449394 D COG2890; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1448459..1449394 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951200 YP_002924361.1 CDS HDEF_1601 NC_012751.1 1449619 1450161 R hypothetical protein complement(1449619..1450161) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951201 YP_002924362.1 CDS HDEF_1602 NC_012751.1 1450603 1450809 D hypothetical protein 1450603..1450809 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951202 YP_002924363.1 CDS HDEF_1603 NC_012751.1 1450806 1451471 D hypothetical protein 1450806..1451471 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951203 YP_002924364.1 CDS HDEF_1604 NC_012751.1 1451874 1452614 D transcriptional regulator 1451874..1452614 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951204 YP_002924365.1 CDS HDEF_1605 NC_012751.1 1452636 1452788 R hypothetical protein complement(1452636..1452788) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951205 YP_002924366.1 CDS xseB NC_012751.1 1452915 1453205 D COG1722; exonuclease VII small subunit 1452915..1453205 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951206 YP_002924367.1 CDS ispA NC_012751.1 1453210 1454148 D COG0142; geranyltranstransferase (=farnesyldiphosphate synthase) 1453210..1454148 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951207 YP_002924368.1 CDS dxs NC_012751.1 1454175 1456043 D COG1154; 1-deoxy-D-xylulose-5-phosphate synthase 1454175..1456043 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951208 YP_002924369.1 CDS HDEF_1609 NC_012751.1 1456327 1458366 R hypothetical protein complement(1456327..1458366) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951209 YP_002924370.1 CDS nuoM NC_012751.1 1458760 1460262 R COG1008; NADH dehydrogenase I chain M, membrane subunit complement(1458760..1460262) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951210 YP_002924371.1 CDS nuoL NC_012751.1 1460304 1462205 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(1460304..1462205) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951211 YP_002924372.1 CDS nuoK NC_012751.1 1462202 1462504 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(1462202..1462504) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951212 YP_002924373.1 CDS nuoJ NC_012751.1 1462648 1463214 R COG0839; NADH dehydrogenase I chain J complement(1462648..1463214) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951213 YP_002924374.1 CDS nuoI NC_012751.1 1463337 1463879 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(1463337..1463879) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951214 YP_002924375.1 CDS nuoH NC_012751.1 1463954 1464931 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1463954..1464931) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951215 YP_002924376.1 CDS nuoG NC_012751.1 1464928 1467660 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(1464928..1467660) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951216 YP_002924377.1 CDS HDEF_1617 NC_012751.1 1467641 1467766 R hypothetical protein complement(1467641..1467766) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951217 YP_002924378.1 CDS gltL NC_012751.1 1468006 1468731 R COG1126; glutamate-aspartate ABC transporter ATP-binding component complement(1468006..1468731) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951218 YP_002924379.1 CDS uvrB NC_012751.1 1468797 1470812 R COG0556; excinulease of nucleotide excision repair, DNA damage recognition component complement(1468797..1470812) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951219 YP_002924380.1 CDS dksA NC_012751.1 1471012 1471467 D COG1734; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein 1471012..1471467 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951220 YP_002924381.1 CDS pcnB NC_012751.1 1471674 1472993 D COG0617; poly(A) polymerase I 1471674..1472993 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951221 YP_002924382.1 CDS folK NC_012751.1 1473006 1473518 D COG0801; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 1473006..1473518 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951222 YP_002924383.1 CDS HDEF_1623 NC_012751.1 1473743 1474888 D COG0845; multidrug efflux pump, membrane fusion (MFP/HlyD) family 1473743..1474888 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951223 YP_002924384.1 CDS HDEF_1624 NC_012751.1 1474952 1478092 D COG0841; multidrug efflux pump 1474952..1478092 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951224 YP_002924385.1 CDS hha NC_012751.1 1478579 1478800 D hemolysin expression modulator 1478579..1478800 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951225 YP_002924386.1 CDS folA NC_012751.1 1479408 1479893 D COG0262; dihydrofolate reductase type I, trimethoprim resistance 1479408..1479893 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951226 YP_002924387.1 CDS HDEF_1627 NC_012751.1 1479931 1480050 R hypothetical protein complement(1479931..1480050) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951227 YP_002924388.1 CDS mutS NC_012751.1 1480073 1482637 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1480073..1482637 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951228 YP_002924389.1 CDS barA NC_012751.1 1482677 1485301 D hybrid sensory histidine kinase in two-component regulatory system with UvrY 1482677..1485301 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951229 YP_002924390.1 CDS metJ NC_012751.1 1485383 1485700 D when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 1485383..1485700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951230 YP_002924391.1 CDS ubiA NC_012751.1 1485710 1486558 R COG0382; p-hydroxybenzoate octaprenyltransferase complement(1485710..1486558) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951231 YP_002924392.1 CDS ubiC NC_012751.1 1486551 1487078 R COG3161; chorismate pyruvate lyase complement(1486551..1487078) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951232 YP_002924393.1 CDS HDEF_1633 NC_012751.1 1487159 1488118 R hypothetical protein complement(1487159..1488118) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951233 YP_002924394.1 CDS trpS NC_012751.1 1488149 1489171 R COG0180; tryptophanyl-tRNA synthetase complement(1488149..1489171) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951234 YP_002924395.1 CDS HDEF_1636 NC_012751.1 1489267 1489377 R hypothetical protein complement(1489267..1489377) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951235 YP_002924396.1 CDS smaR NC_012751.1 1489352 1490059 D COG2771; autoinducer response regulator 1489352..1490059 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951237 YP_002924397.1 CDS rpe NC_012751.1 1490200 1490877 R COG0036; D-ribulose-5-phosphate 3-epimerase complement(1490200..1490877) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951236 YP_002924398.1 CDS dam NC_012751.1 1490891 1491703 R COG0338; DNA adenine methylase complement(1490891..1491703) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951238 YP_002924399.1 CDS HDEF_1638 NC_012751.1 1491656 1491829 D hypothetical protein 1491656..1491829 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951240 YP_002924400.1 CDS aroB NC_012751.1 1491838 1492926 R COG0337; dehydroquinate synthase complement(1491838..1492926) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951239 YP_002924401.1 CDS aroK NC_012751.1 1492960 1493481 R COG0703; shikimate kinase I complement(1492960..1493481) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951241 YP_002924402.1 CDS HDEF_1642 NC_012751.1 1493584 1494417 R COG1718; serine/threonine protein kinase involved in cell cycle control complement(1493584..1494417) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951242 YP_002924403.1 CDS pta NC_012751.1 1494526 1496655 R COG0280,COG0857; phosphate acetyltransferase complement(1494526..1496655) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951243 YP_002924404.1 CDS ackA NC_012751.1 1496726 1497949 R COG0282; acetate kinase A and propionate kinase 2 complement(1496726..1497949) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951244 YP_002924405.1 CDS HDEF_1645 NC_012751.1 1498160 1498378 R hypothetical protein complement(1498160..1498378) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951245 YP_002924406.1 CDS P38_1 NC_012751.1 1498879 1500024 R COG0582; APSE-2 prophage; integrase complement(1498879..1500024) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951247 YP_002924407.1 CDS P40 NC_012751.1 1499880 1500260 R APSE-2 prophage: excisionase complement(1499880..1500260) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951248 YP_002924408.1 CDS P41 NC_012751.1 1500475 1501857 R COG0553; APSE-2 prophage; DEAD box helicase complement(1500475..1501857) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951249 YP_002924409.1 CDS P42 NC_012751.1 1501877 1502623 R APSE-2 prophage; DNA binding protein Roi complement(1501877..1502623) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951250 YP_002924410.1 CDS P43 NC_012751.1 1502689 1503462 R APSE-2 prophage; antirepressor complement(1502689..1503462) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951251 YP_002924411.1 CDS G NC_012751.1 1503767 1504570 R APSE-2 prophage protein complement(1503767..1504570) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951252 YP_002924412.1 CDS P44 NC_012751.1 1504982 1505266 R APSE-2 prophage protein complement(1504982..1505266) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951253 YP_002924413.1 CDS P45 NC_012751.1 1505501 1508482 R APSE-2 prophage; DNA polymerase complement(1505501..1508482) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951254 YP_002924414.1 CDS I NC_012751.1 1508495 1508842 R APSE-2 prophage protein complement(1508495..1508842) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951255 YP_002924415.1 CDS P47 NC_012751.1 1508918 1509283 D APSE-2 prophage; hypothetical 1508918..1509283 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951256 YP_002924417.1 CDS P50 NC_012751.1 1509643 1510197 R APSE-2 prophage; hypothetical complement(1509643..1510197) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951258 YP_002924418.1 CDS P51 NC_012751.1 1510213 1511532 R APSE-2 prophage; hypothetical complement(1510213..1511532) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951259 YP_002924419.1 CDS P53 NC_012751.1 1511504 1512421 R APSE-2 prophage; hypothetical complement(1511504..1512421) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951260 YP_002924420.1 CDS P1 NC_012751.1 1512986 1513768 R APSE-2 prophage; cI complement(1512986..1513768) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951261 YP_002924421.1 CDS P2 NC_012751.1 1513780 1514064 D APSE-2 prophage: cro 1513780..1514064 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951262 YP_002924422.1 CDS P3 NC_012751.1 1514068 1516305 D P-loop ATPase 1514068..1516305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951263 YP_002924423.1 CDS P4 NC_012751.1 1516409 1516630 D APSE-2 prophage protein 1516409..1516630 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951264 YP_002924424.1 CDS P5 NC_012751.1 1516757 1517203 D APSE-2 prophage; Q protein 1516757..1517203 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951265 YP_002924425.1 CDS HDEF_1668 NC_012751.1 1517574 1517738 D hypothetical protein 1517574..1517738 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951266 YP_002924426.1 CDS A NC_012751.1 1517900 1518304 D APSE-2 prophage protein 1517900..1518304 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951267 YP_002924427.1 CDS B NC_012751.1 1518686 1519063 D APSE-2 prophage protein 1518686..1519063 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951268 YP_002924428.1 CDS cdtB NC_012751.1 1519315 1520304 D APSE-2 prophage; cytolethal distending toxin subunit B 1519315..1520304 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951269 YP_002924429.1 CDS D NC_012751.1 1520562 1521326 D APSE-2 prophage protein 1520562..1521326 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951270 YP_002924430.1 CDS P11 NC_012751.1 1521834 1522112 D APSE-2 prophage; Lambda-like group I holin 1521834..1522112 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951271 YP_002924431.1 CDS E NC_012751.1 1522309 1522536 D APSE-2 prophage 1522309..1522536 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951272 YP_002924432.1 CDS F NC_012751.1 1522499 1522963 D COG3772; APSE-2 prophage; lysozyme 1522499..1522963 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951273 YP_002924433.1 CDS P14 NC_012751.1 1522968 1523354 D APSE-2 prophage protein 1522968..1523354 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951274 YP_002924434.1 CDS P16 NC_012751.1 1523173 1523502 D APSE-2 prophage protein 1523173..1523502 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951275 YP_002924435.1 CDS P17 NC_012751.1 1523576 1523992 D APSE-2 prophage protein 1523576..1523992 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951276 YP_002924436.1 CDS P18 NC_012751.1 1524009 1525418 D APSE-2 prophage; terminase 1524009..1525418 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951277 YP_002924437.1 CDS P19 NC_012751.1 1525418 1527580 D APSE-2 prophage; portal protein 1525418..1527580 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951278 YP_002924438.1 CDS P23 NC_012751.1 1527631 1528527 D APSE-2 prophage; scaffold protein, gp8 1527631..1528527 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951279 YP_002924439.1 CDS P24 NC_012751.1 1528538 1529809 D APSE-2 prophage; conserved APSE major head protein 1528538..1529809 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951280 YP_002924440.1 CDS P27 NC_012751.1 1530029 1530511 D APSE-2 prophage; DNA stabilization, gp4 1530029..1530511 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951281 YP_002924441.1 CDS P28 NC_012751.1 1530483 1531898 D APSE-2 prophage; DNA stabilization, gp10 1530483..1531898 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951282 YP_002924442.1 CDS P30 NC_012751.1 1531898 1532428 D APSE-2 prophage; DNA stabilization, gp26 1531898..1532428 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951283 YP_002924443.1 CDS P31 NC_012751.1 1532428 1532895 D APSE-2 prophage protein 1532428..1532895 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951284 YP_002924444.1 CDS P32 NC_012751.1 1532873 1533502 D APSE-2 prophage; transfer protein gp7 1532873..1533502 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951285 YP_002924445.1 CDS P33 NC_012751.1 1533515 1534903 D APSE-2 prophage; transfer protein gp20 1533515..1534903 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951286 YP_002924446.1 CDS P35 NC_012751.1 1534903 1536780 D APSE-2 prophage; transfer protein gp16 1534903..1536780 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951287 YP_002924447.1 CDS P36 NC_012751.1 1536809 1537837 D APSE-2 prophage; tail spike proptein gp9 1536809..1537837 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951288 YP_002924448.1 CDS P37 NC_012751.1 1537839 1538291 D COG5525; APSE-2 prophage; tail fiber asembly protein 1537839..1538291 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951289 YP_002924449.1 CDS P38_2 NC_012751.1 1538746 1539891 R COG0582; APSE-2 prophage; integrase complement(1538746..1539891) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951290 YP_002924450.1 CDS HDEF_1694 NC_012751.1 1540111 1540584 R N terminal truncation; COG0553; phage DNA helicase, partial complement(1540111..1540584) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951291 YP_002924451.1 CDS HDEF_1696 NC_012751.1 1541856 1541999 D hypothetical protein 1541856..1541999 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951293 YP_002924452.1 CDS HDEF_1697 NC_012751.1 1541987 1542256 D hypothetical protein 1541987..1542256 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951294 YP_002924453.1 CDS HDEF_1698 NC_012751.1 1542365 1542511 D hypothetical protein 1542365..1542511 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951295 YP_002924454.1 CDS HDEF_1699 NC_012751.1 1542832 1543176 D hypothetical protein 1542832..1543176 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951296 YP_002924455.1 CDS HDEF_1700 NC_012751.1 1543367 1543852 D phage endolysin 1543367..1543852 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951297 YP_002924456.1 CDS HDEF_1701 NC_012751.1 1543831 1544256 D hypothetical protein 1543831..1544256 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951298 YP_002924457.1 CDS HDEF_1702 NC_012751.1 1544418 1544696 D hypothetical protein 1544418..1544696 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951299 YP_002924458.1 CDS HDEF_1703 NC_012751.1 1544693 1545226 D hypothetical protein 1544693..1545226 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951300 YP_002924459.1 CDS HDEF_1704 NC_012751.1 1545210 1546649 D phage terminase-like protein 1545210..1546649 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951301 YP_002924460.1 CDS HDEF_1706 NC_012751.1 1547123 1547527 R ISHde1, transposase complement(1547123..1547527) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951303 YP_002924461.1 CDS HDEF_1707 NC_012751.1 1547568 1547945 R ISHde1, transposase complement(1547568..1547945) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951304 YP_002924462.1 CDS HDEF_1710 NC_012751.1 1549401 1549664 D C terminal truncation; phage integrase 1549401..1549664 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951307 YP_002924463.1 CDS rtxA_21 NC_012751.1 1549965 1553912 D RTX-family protein-21 1549965..1553912 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951308 YP_002924464.1 CDS rpoS NC_012751.1 1553846 1554853 R COG0568; RNA polymerase, sigma S (sigma 38) factor complement(1553846..1554853) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951309 YP_002924465.1 CDS nlpD NC_012751.1 1554908 1555873 R COG0739; lipoprotein complement(1554908..1555873) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951310 YP_002924466.1 CDS ispF NC_012751.1 1555884 1556369 R COG0245; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(1555884..1556369) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951311 YP_002924467.1 CDS ispD NC_012751.1 1556378 1557103 R COG1211; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(1556378..1557103) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951312 YP_002924468.1 CDS ftsB NC_012751.1 1557106 1557420 R COG2919; cell division protein complement(1557106..1557420) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951313 YP_002924469.1 CDS sscR NC_012751.1 1557548 1557928 D COG0720; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) 1557548..1557928 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951314 YP_002924470.1 CDS rimN NC_012751.1 1557939 1558508 R COG0009; ribosome maturation factor complement(1557939..1558508) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951315 YP_002924471.1 CDS def NC_012751.1 1559749 1560264 D COG0242; peptide deformylase 1559749..1560264 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951317 YP_002924472.1 CDS fmt NC_012751.1 1560338 1561297 D COG0223; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase 1560338..1561297 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951318 YP_002924473.1 CDS sun NC_012751.1 1561297 1562586 D COG0144; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent 1561297..1562586 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951319 YP_002924474.1 CDS trkA NC_012751.1 1562604 1563980 D COG0569; potassium transport protein, NAD(P)-binding (Trk family) 1562604..1563980 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951320 YP_002924475.1 CDS HDEF_1724 NC_012751.1 1564045 1566351 D COG2183; transcriptional accessory protein, RNA binding S1 domain protein 1564045..1566351 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951321 YP_002924476.1 CDS hemL NC_012751.1 1566370 1567656 D COG0001; glutamate-1-semialdehyde aminotransferase (aminomutase), PLP-dependent 1566370..1567656 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951322 YP_002924477.1 CDS mreB NC_012751.1 1567957 1569000 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1567957..1569000 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951323 YP_002924478.1 CDS mreC NC_012751.1 1569010 1569867 D COG1792; rod shape-determining protein 1569010..1569867 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951324 YP_002924479.1 CDS mreD NC_012751.1 1570002 1570490 D part of cell wall structural complex MreBCD; transmembrane component; rod shape-determining protein MreD 1570002..1570490 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951325 YP_002924480.1 CDS rng NC_012751.1 1570524 1572011 D COG1530; RNase G (ribonuclease G) 1570524..1572011 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951326 YP_002924481.1 CDS tldD NC_012751.1 1572099 1573544 D responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA; protease TldD 1572099..1573544 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951327 YP_002924482.1 CDS yabI NC_012751.1 1573646 1574161 D COG0586; integral membrane protein 1573646..1574161 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951328 YP_002924483.1 CDS ubiE NC_012751.1 1574177 1574938 D COG2226; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase; S-adenosylmethionine:2-DMK methyltransferase 1574177..1574938 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951329 YP_002924484.1 CDS HDEF_1733 NC_012751.1 1574991 1575599 D COG3165; hypothetical protein 1574991..1575599 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951330 YP_002924485.1 CDS ubiB NC_012751.1 1575596 1577227 D COG0661; 2-octaprenylphenol hydroxylase of ubiquinone biosynthetic pathway 1575596..1577227 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951331 YP_002924486.1 CDS tatA NC_012751.1 1577251 1577505 D COG1826; TatABCE protein translocation system subunit 1577251..1577505 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951332 YP_002924487.1 CDS tatC NC_012751.1 1577763 1578482 D COG0805; twin-arginine translocase subunit, sec-independent protein export 1577763..1578482 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951334 YP_002924488.1 CDS coaA NC_012751.1 1578490 1579440 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(1578490..1579440) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951335 YP_002924489.1 CDS dnaA NC_012751.1 1579736 1581100 D transcriptional regulator of replication and housekeeping genes; COG0593; DNA replication initiator protein 1579736..1581100 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951336 YP_002924490.1 CDS dnaN NC_012751.1 1581117 1582223 D COG0592; DNA polymerase III, beta-subunit 1581117..1582223 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951337 YP_002924491.1 CDS gyrB NC_012751.1 1583346 1585760 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1583346..1585760 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951339 YP_002924492.1 CDS HDEF_1743 NC_012751.1 1585916 1586656 R COG0565; rRNA methylase, SpoU family complement(1585916..1586656) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951340 YP_002924493.1 CDS suhB NC_012751.1 1586811 1587602 D COG0483; inositol monophosphatase 1586811..1587602 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951341 YP_002924494.1 CDS fumC NC_012751.1 1587692 1589089 R COG0114; fumarase C (fumarate hydratase Class II) complement(1587692..1589089) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951342 YP_002924495.1 CDS nadA NC_012751.1 1589113 1590174 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1589113..1590174) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951343 YP_002924496.1 CDS HDEF_1747 NC_012751.1 1590424 1591203 R hypothetical protein complement(1590424..1591203) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951344 YP_002924497.1 CDS HDEF_1748 NC_012751.1 1591750 1591854 D hypothetical protein 1591750..1591854 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951345 YP_002924498.1 CDS grpE NC_012751.1 1597351 1598016 R COG0576; Hsp 24 nucleotide exchange factor complement(1597351..1598016) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951351 YP_002924499.1 CDS nadK NC_012751.1 1598120 1599034 D COG0061; NAD kinase 1598120..1599034 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951352 YP_002924500.1 CDS HDEF_1756 NC_012751.1 1599009 1599146 D hypothetical protein 1599009..1599146 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951353 YP_002924501.1 CDS yfjB NC_012751.1 1599281 1599853 R COG2823; hypothetical protein complement(1599281..1599853) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951354 YP_002924502.1 CDS diaA NC_012751.1 1599850 1600455 R COG0279; DnaA initiator-associating factor for replication initiation complement(1599850..1600455) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951355 YP_002924503.1 CDS HDEF_1759 NC_012751.1 1600504 1600860 R COG0792; hypothetical protein complement(1600504..1600860) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951356 YP_002924504.1 CDS HDEF_1761 NC_012751.1 1601540 1601728 R hypothetical protein complement(1601540..1601728) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951357 YP_002924505.1 CDS ispB NC_012751.1 1601709 1602641 D COG0142; octaprenyl diphosphate synthase 1601709..1602641 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951359 YP_002924506.1 CDS HDEF_1762 NC_012751.1 1602688 1603035 R phage Mu DNA-binding domain protein complement(1602688..1603035) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951358 YP_002924507.1 CDS HDEF_1763 NC_012751.1 1603060 1603170 R hypothetical protein complement(1603060..1603170) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951360 YP_002924508.1 CDS nlp NC_012751.1 1603399 1603593 D COG3423; transcriptional activator of maltose metabolism 1603399..1603593 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951361 YP_002924509.1 CDS hemG NC_012751.1 1603975 1604511 R COG4635; protoporphyrin flavoprotein oxidase, O2 dependent complement(1603975..1604511) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951362 YP_002924510.1 CDS cysB NC_012751.1 1604564 1605538 R COG0583; LysR family transcriptional regulator complement(1604564..1605538) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951363 YP_002924511.1 CDS topA NC_012751.1 1605629 1608250 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1605629..1608250) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951364 YP_002924512.1 CDS sohB NC_012751.1 1608392 1609438 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(1608392..1609438) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951365 YP_002924513.1 CDS HDEF_1769 NC_012751.1 1609618 1610670 R N terminal truncation; choline/ethanolamine kinase complement(1609618..1610670) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951366 YP_002924514.1 CDS artP NC_012751.1 1610696 1611424 D COG4161; arginine transport protein (ABC superfamily, atp_bind) 1610696..1611424 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951367 YP_002924515.1 CDS artI NC_012751.1 1611529 1612278 D COG0834; arginine transport protein (ABC superfamily, peri_bind) 1611529..1612278 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951368 YP_002924516.1 CDS artM NC_012751.1 1612287 1612997 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 1612287..1612997 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951369 YP_002924517.1 CDS artM NC_012751.1 1613003 1613671 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 1613003..1613671 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951370 YP_002924518.1 CDS HDEF_1774 NC_012751.1 1613774 1614727 D hypothetical protein 1613774..1614727 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951371 YP_002924519.1 CDS yadH NC_012751.1 1614805 1615575 R COG0842; transport protein (ABC superfamily, membrane) complement(1614805..1615575) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951372 YP_002924520.1 CDS yadG NC_012751.1 1615572 1616495 R COG1131; transport protein (ABC superfamily, atp_bind) complement(1615572..1616495) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951373 YP_002924521.1 CDS lpxC NC_012751.1 1616842 1617762 R COG0774; UDP-3-O-acyl N-acetylglucosamine deacetylase complement(1616842..1617762) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951374 YP_002924522.1 CDS ftsZ NC_012751.1 1618032 1619186 R COG0206; tubulin-like GTP-binding protein and GTPase, forms circumferential ring in cell division complement(1618032..1619186) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951375 YP_002924523.1 CDS ftsA NC_012751.1 1619338 1620597 R COG0849; cell division protein complement(1619338..1620597) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951376 YP_002924524.1 CDS ftsQ NC_012751.1 1620625 1621440 R COG1589; cell division protein; ingrowth of wall at septum complement(1620625..1621440) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951377 YP_002924525.1 CDS ddlB NC_012751.1 1621442 1622404 R COG1181; D-alanine-D-alanine ligase B, affects cell division complement(1621442..1622404) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951378 YP_002924526.1 CDS murC NC_012751.1 1622397 1623878 R COG0773; UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme complement(1622397..1623878) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951379 YP_002924527.1 CDS murG NC_012751.1 1623887 1624966 R COG0707; UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase complement(1623887..1624966) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951380 YP_002924528.1 CDS ftsW NC_012751.1 1624963 1626135 R integral membrane protein involved in stabilizing FstZ ring during cell division; cell division protein FtsW complement(1624963..1626135) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951381 YP_002924529.1 CDS murD NC_012751.1 1626132 1627469 R COG0771; UDP-N-acetylmuramoylalanine-D-glutamate ligase complement(1626132..1627469) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951382 YP_002924530.1 CDS mraY NC_012751.1 1627469 1628551 R COG0472; phospho-N-acetylmuramoyl-pentapeptide transferase complement(1627469..1628551) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951383 YP_002924531.1 CDS murF NC_012751.1 1628545 1629906 R COG0770; D-alanine:D-alanine-adding enzyme complement(1628545..1629906) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951384 YP_002924532.1 CDS murE NC_012751.1 1629908 1631416 R COG0769; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase complement(1629908..1631416) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951385 YP_002924533.1 CDS ftsI NC_012751.1 1631403 1633154 R COG0768; division-specific transpeptidase, penicillin-binding protein 3 complement(1631403..1633154) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951386 YP_002924534.1 CDS ftsL NC_012751.1 1633164 1633529 R membrane bound cell division protein at septum containing leucine zipper motif; cell division protein FtsL complement(1633164..1633529) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951387 YP_002924535.1 CDS mraW NC_012751.1 1633529 1634464 R COG0275; S-adenosyl-dependent methyl transferase complement(1633529..1634464) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951388 YP_002924536.1 CDS mraZ NC_012751.1 1634491 1634949 R COG2001; cell division protein complement(1634491..1634949) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951389 YP_002924537.1 CDS leuO NC_012751.1 1635215 1636171 R activator for leuABCD operon; member of LysR family of transcriptional activators; leucine transcriptional activator complement(1635215..1636171) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951390 YP_002924538.1 CDS HDEF_1794 NC_012751.1 1636360 1636455 R hypothetical protein complement(1636360..1636455) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951391 YP_002924539.1 CDS HDEF_1795 NC_012751.1 1636765 1636869 D hypothetical protein 1636765..1636869 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951392 YP_002924540.1 CDS HDEF_1796 NC_012751.1 1636787 1636909 D hypothetical protein 1636787..1636909 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951393 YP_002924541.1 CDS HDEF_1797 NC_012751.1 1637054 1637926 R hypothetical protein complement(1637054..1637926) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951394 YP_002924542.1 CDS HDEF_1798 NC_012751.1 1637945 1638799 R hypothetical protein complement(1637945..1638799) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951395 YP_002924543.1 CDS HDEF_1799 NC_012751.1 1638879 1641269 R intimin-like protein complement(1638879..1641269) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951396 YP_002924544.1 CDS yojN NC_012751.1 1641954 1642271 D N terminal truncation; COG2198; sensory histidine kinase (phosphotransfer intermediate) associated with the RcsBC two-component regulatory system 1641954..1642271 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951397 YP_002924545.1 CDS rcsB NC_012751.1 1642258 1645247 D regulates capsule biosynthesis, cell division genes, OsmC expression, repressor of flhDC operon (LuxR/UhpA familiy); two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF; transcriptional regulator RcsB join(1642258..1642569,1644915..1645247) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951398 YP_002924546.1 CDS cpxR NC_012751.1 1645525 1646229 D regulates genes involved in folding/degrading periplasmic proteins (OmpR family; COG0745; response regulator in two-component regulatory system with CpxA 1645525..1646229 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951399 YP_002924547.1 CDS yibK NC_012751.1 1646298 1646810 D COG0219; tRNA/rRNA methyltransferase 1646298..1646810 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951400 YP_002924548.1 CDS sanA NC_012751.1 1646737 1647486 R COG2949; vancomycin sensitivity, oxidoreductase complement(1646737..1647486) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951401 YP_002924549.1 CDS sfcA NC_012751.1 1647660 1649348 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(1647660..1649348) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951402 YP_002924550.1 CDS metG NC_012751.1 1649375 1651012 R COG0143; methionine tRNA synthetase complement(1649375..1651012) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951403 YP_002924551.1 CDS HDEF_1808 NC_012751.1 1651177 1652286 D COG0489; ATPase 1651177..1652286 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951404 YP_002924552.1 CDS HDEF_1809 NC_012751.1 1652459 1653535 R hypothetical protein complement(1652459..1653535) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951405 YP_002924553.1 CDS kdtA NC_012751.1 1653772 1655061 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1653772..1655061 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951406 YP_002924554.1 CDS HDEF_1811 NC_012751.1 1655058 1655843 D COG0463; glycosyltransferase group 2 1655058..1655843 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951407 YP_002924555.1 CDS coaD NC_012751.1 1655853 1656323 D COG0669; CMP-deoxy-D-manno-octulosonate-lipid A transferase (phosphopantetheine adenylyltransferase) 1655853..1656323 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951408 YP_002924556.1 CDS HDEF_1813 NC_012751.1 1656817 1657230 D hypothetical protein 1656817..1657230 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951409 YP_002924557.1 CDS HDEF_1814 NC_012751.1 1657621 1658637 D hypothetical protein 1657621..1658637 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951410 YP_002924558.1 CDS uvrA NC_012751.1 1659066 1661897 D COG0178; DNA excision repair enzyme subunit, with UvrBC 1659066..1661897 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951411 YP_002924559.1 CDS yhcM NC_012751.1 1661967 1663109 R COG1485; ATPase complement(1661967..1663109) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951412 YP_002924560.1 CDS yhcB NC_012751.1 1663196 1663588 D COG3105; cytochrome d ubiquinol oxidase subunit III 1663196..1663588 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951413 YP_002924561.1 CDS degS NC_012751.1 1663653 1664696 D COG0265; serine endoprotease 1663653..1664696 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951414 YP_002924562.1 CDS mtr NC_012751.1 1664766 1666004 R COG0814; tryptophan-specific transport protein (HAAAP family) complement(1664766..1666004) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951415 YP_002924563.1 CDS fruB NC_012751.1 1666234 1667367 D phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 1666234..1667367 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951416 YP_002924564.1 CDS fruK NC_012751.1 1667364 1668299 D COG1105; fructose-1-phosphate kinase 1667364..1668299 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951417 YP_002924565.1 CDS fruA NC_012751.1 1668311 1669993 D phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system fructose-specific transporter subunits IIBC 1668311..1669993 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951418 YP_002924566.1 CDS aspC_2 NC_012751.1 1670073 1671335 D COG0436; aspartate aminotransferase, PLP-dependent - 2 1670073..1671335 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951419 YP_002924567.1 CDS thrS NC_012751.1 1671459 1673375 D COG0441; threonine tRNA synthetase 1671459..1673375 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951420 YP_002924568.1 CDS infC NC_012751.1 1673392 1673946 D COG0290; protein chain initiation factor IF-3 1673392..1673946 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951421 YP_002924569.1 CDS rpmI NC_012751.1 1674044 1674241 D COG0291; 50S ribosomal subunit protein L35 1674044..1674241 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951422 YP_002924570.1 CDS rplT NC_012751.1 1674281 1674637 D COG0292; 50S ribosomal subunit protein L20, also posttranslational autoregulator 1674281..1674637 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951423 YP_002924571.1 CDS HDEF_1829 NC_012751.1 1674698 1674847 R hypothetical protein complement(1674698..1674847) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951424 YP_002924572.1 CDS pheS NC_012751.1 1674778 1675761 D COG0016; phenylalanine tRNA synthetase, alpha-subunit 1674778..1675761 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951426 YP_002924573.1 CDS pheT NC_012751.1 1675776 1678175 D COG0072; phenylalanine tRNA synthetase, beta-subunit 1675776..1678175 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951425 YP_002924574.1 CDS ihfA NC_012751.1 1678181 1678504 D COG0776; integration host factor (IHF), DNA-binding protein, alpha subunit 1678181..1678504 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951427 YP_002924575.1 CDS mukF NC_012751.1 1678516 1679844 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1678516..1679844 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951428 YP_002924576.1 CDS mukE NC_012751.1 1679852 1680559 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1679852..1680559 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951429 YP_002924577.1 CDS mukB NC_012751.1 1680556 1684971 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1680556..1684971 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951430 YP_002924578.1 CDS HDEF_1835 NC_012751.1 1685035 1686627 D COG2989; hypothetical protein 1685035..1686627 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951431 YP_002924579.1 CDS prlC NC_012751.1 1686636 1688684 R COG0339; oligopeptidase A complement(1686636..1688684) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951432 YP_002924580.1 CDS purC NC_012751.1 1688743 1689456 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1688743..1689456) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951433 YP_002924581.1 CDS nlpB NC_012751.1 1689498 1690556 R COG3317; lipoprotein complement(1689498..1690556) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951434 YP_002924582.1 CDS dapA NC_012751.1 1690594 1691493 R COG0329; dihydrodipicolinate synthase complement(1690594..1691493) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951435 YP_002924583.1 CDS rplQ NC_012751.1 1691634 1692029 R COG0203; 50S ribosomal subunit protein L17 complement(1691634..1692029) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951436 YP_002924584.1 CDS rpoA NC_012751.1 1692068 1693060 R COG0202; RNA polymerase, alpha subunit complement(1692068..1693060) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951437 YP_002924585.1 CDS rpsD NC_012751.1 1693086 1693706 R COG0522; 30S ribosomal protein S4 complement(1693086..1693706) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951438 YP_002924586.1 CDS rpsK NC_012751.1 1693737 1694126 R COG0100; 30S ribosomal protein S11 complement(1693737..1694126) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951439 YP_002924587.1 CDS rpsM NC_012751.1 1694142 1694498 R COG0099; 30S ribosomal protein S13 complement(1694142..1694498) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951440 YP_002924588.1 CDS rpmJ NC_012751.1 1694634 1694750 R COG0257; 50S ribosomal subunit protein L36 complement(1694634..1694750) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951441 YP_002924589.1 CDS secY NC_012751.1 1694784 1696109 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1694784..1696109) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951442 YP_002924590.1 CDS rplO NC_012751.1 1696117 1696551 R COG0200; 50S ribosomal protein L15 complement(1696117..1696551) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951443 YP_002924591.1 CDS rpmD NC_012751.1 1696542 1696745 R COG1841; 50S ribosomal subunit protein L30 complement(1696542..1696745) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951444 YP_002924592.1 CDS rpsE NC_012751.1 1696750 1697259 R COG0098; 30S ribosomal protein S5 complement(1696750..1697259) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951445 YP_002924593.1 CDS rplR NC_012751.1 1697279 1697632 R COG0256; 50S ribosomal protein L18 complement(1697279..1697632) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951446 YP_002924594.1 CDS rplF NC_012751.1 1697642 1698175 R COG0097; 50S ribosomal protein L6 complement(1697642..1698175) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951447 YP_002924595.1 CDS rpsH NC_012751.1 1698189 1698584 R COG0096; 30S ribosomal protein S8 complement(1698189..1698584) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951448 YP_002924596.1 CDS rpsN NC_012751.1 1698619 1698924 R COG0199; 30S ribosomal subunit protein S14 complement(1698619..1698924) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951449 YP_002924597.1 CDS rplE NC_012751.1 1698940 1699479 R COG0094; 50S ribosomal protein L5 complement(1698940..1699479) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951450 YP_002924598.1 CDS rplX NC_012751.1 1699501 1699830 R COG0198; 50S ribosomal subunit protein L24 complement(1699501..1699830) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951451 YP_002924599.1 CDS rplN NC_012751.1 1699841 1700212 R COG0093; 50S ribosomal protein L14 complement(1699841..1700212) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951452 YP_002924600.1 CDS rpsQ NC_012751.1 1700371 1700625 R COG0186; 30S ribosomal protein S17 complement(1700371..1700625) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951453 YP_002924601.1 CDS rpmC NC_012751.1 1700622 1700816 R COG0255; 50S ribosomal subunit protein L29 complement(1700622..1700816) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951454 YP_002924602.1 CDS rplP NC_012751.1 1700858 1701268 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1700858..1701268) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951455 YP_002924603.1 CDS rpsC NC_012751.1 1701268 1701969 R COG0092; 30S ribosomal protein S3 complement(1701268..1701969) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951456 YP_002924604.1 CDS rplV NC_012751.1 1701969 1702319 R COG0091; 50S ribosomal protein L22 complement(1701969..1702319) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951457 YP_002924605.1 CDS rpsS NC_012751.1 1702333 1702617 R COG0185; 30S ribosomal subunit protein S19 complement(1702333..1702617) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951458 YP_002924606.1 CDS rplB NC_012751.1 1702634 1703458 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1702634..1703458) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951459 YP_002924607.1 CDS rplW NC_012751.1 1703475 1703777 R COG0089; 50S ribosomal subunit protein L23 complement(1703475..1703777) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951460 YP_002924608.1 CDS rplD NC_012751.1 1703774 1704379 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1703774..1704379) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951461 YP_002924609.1 CDS rplC NC_012751.1 1704396 1705028 R COG0087; 50S ribosomal protein L3 complement(1704396..1705028) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951462 YP_002924610.1 CDS rpsJ NC_012751.1 1705061 1705381 R COG0051; 30S ribosomal subunit protein S10 complement(1705061..1705381) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951463 YP_002924611.1 CDS fecD NC_012751.1 1706397 1707461 R COG0609; citrate-dependent iron (III) transport protein (ABC superfamily, membrane) complement(1706397..1707461) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951465 YP_002924612.1 CDS HDEF_1871 NC_012751.1 1707664 1708569 R C terminal truncation; transporter major facilitator superfamily complement(1707664..1708569) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951467 YP_002924613.1 CDS HDEF_1872 NC_012751.1 1708700 1709746 R NAD/NADP octopine/nopaline dehydrogenase complement(1708700..1709746) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951468 YP_002924614.1 CDS cysK NC_012751.1 1709743 1710438 R subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme complement(1709743..1710438) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951469 YP_002924615.1 CDS HDEF_1874 NC_012751.1 1710407 1711216 R C terminal truncation; lysine/ornithine decarboxylase complement(1710407..1711216) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951470 YP_002924616.1 CDS feoA NC_012751.1 1713182 1713397 D COG1918; ferrous iron transport protein A 1713182..1713397 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951472 YP_002924617.1 CDS feoB NC_012751.1 1713415 1715703 D cytoplasmic membrane ferrous uptake system permease; mutations disrupt the ability of Escherichia coli to take up ferrous iron; GTP-binding protein which requires GTP for efficient iron(II) uptake; ferrous iron transport protein B 1713415..1715703 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951473 YP_002924618.1 CDS HDEF_1878 NC_012751.1 1715700 1715948 D hypothetical protein 1715700..1715948 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951474 YP_002924619.1 CDS HDEF_1880 NC_012751.1 1716261 1716449 R hypothetical protein complement(1716261..1716449) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951476 YP_002924620.1 CDS HDEF_1881 NC_012751.1 1716500 1716949 R hypothetical protein complement(1716500..1716949) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951477 YP_002924621.1 CDS gltA NC_012751.1 1717046 1718329 R COG0372; citrate synthase complement(1717046..1718329) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951478 YP_002924622.1 CDS sdhC NC_012751.1 1718710 1719090 D COG2009; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhD 1718710..1719090 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951479 YP_002924623.1 CDS sdhD NC_012751.1 1719084 1719431 D COG2142; succinate dehydrogenase, hydrophobic subunit, cytochrome b556 with SdhC 1719084..1719431 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951480 YP_002924624.1 CDS sdhA NC_012751.1 1719432 1721198 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1719432..1721198 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951481 YP_002924625.1 CDS sdhB NC_012751.1 1721264 1721980 D COG0479; succinate dehydrogenase, Fe-S protein 1721264..1721980 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951482 YP_002924626.1 CDS sucA NC_012751.1 1722017 1724824 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1722017..1724824 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951483 YP_002924627.1 CDS sucB NC_012751.1 1724866 1726152 D COG0508; dihydrolipoyltranssuccinate transferase, component of the 2-oxoglutarate dehydrogenase complex 1724866..1726152 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951484 YP_002924628.1 CDS sucC NC_012751.1 1726270 1727436 D COG0045; succinyl-CoA synthetase, beta subunit 1726270..1727436 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951485 YP_002924629.1 CDS sucD NC_012751.1 1727436 1728308 D COG0074; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding 1727436..1728308 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951486 YP_002924630.1 CDS HDEF_1891 NC_012751.1 1728699 1729097 D hypothetical protein 1728699..1729097 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951487 YP_002924631.1 CDS HDEF_1892 NC_012751.1 1729154 1731634 D peptidase/autotransporter 1729154..1731634 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951488 YP_002924632.1 CDS pfkA NC_012751.1 1732254 1733237 R COG0205; 6-phosphofructokinase I complement(1732254..1733237) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951490 YP_002924633.1 CDS efp NC_012751.1 1733324 1733890 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1733324..1733890) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951491 YP_002924634.1 CDS yjeK NC_012751.1 1733928 1734965 D COG1509; aminomutase 1733928..1734965 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951492 YP_002924635.1 CDS folD NC_012751.1 1735018 1735869 R COG0190; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1735018..1735869) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951493 YP_002924636.1 CDS thrC NC_012751.1 1735911 1737206 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1735911..1737206) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951494 YP_002924637.1 CDS thrB NC_012751.1 1737214 1738143 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(1737214..1738143) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951495 YP_002924638.1 CDS thrA NC_012751.1 1738147 1740609 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(1738147..1740609) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951496 YP_002924639.1 CDS arcA NC_012751.1 1741171 1741923 D COG0745; two-component response regulator 1741171..1741923 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951497 YP_002924640.1 CDS HDEF_1902 NC_012751.1 1742022 1742399 D ISHde1, transposase 1742022..1742399 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951498 YP_002924641.1 CDS HDEF_1903 NC_012751.1 1742440 1742844 D ISHde1, transposase 1742440..1742844 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951499 YP_002924642.1 CDS mutH_1 NC_012751.1 1742868 1743551 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1742868..1743551 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951500 YP_002924643.1 CDS HDEF_1906 NC_012751.1 1743872 1744519 D hypothetical protein 1743872..1744519 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951502 YP_002924644.1 CDS HDEF_1907 NC_012751.1 1744704 1746284 D hypothetical protein 1744704..1746284 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951503 YP_002924645.1 CDS rhtA NC_012751.1 1746598 1747521 R COG5006; threonine and homoserine efflux protein (DMT family) complement(1746598..1747521) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951504 YP_002924646.1 CDS lpd_1 NC_012751.1 1747527 1748900 R COG1249; lipoamide dehydrogenase, E3 component is part of three enzyme complexes complement(1747527..1748900) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951505 YP_002924647.1 CDS hda NC_012751.1 1749117 1749857 R controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor complement(1749117..1749857) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951506 YP_002924648.1 CDS HDEF_1911 NC_012751.1 1750086 1750226 R hypothetical protein complement(1750086..1750226) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951507 YP_002924649.1 CDS HDEF_1912 NC_012751.1 1750775 1751017 R hypothetical protein complement(1750775..1751017) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951508 YP_002924650.1 CDS radC NC_012751.1 1751453 1752121 D COG2003; DNA repair protein 1751453..1752121 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951509 YP_002924651.1 CDS rpmB NC_012751.1 1752268 1752504 D COG0227; 50S ribosomal subunit protein L28 1752268..1752504 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951510 YP_002924652.1 CDS rpmG NC_012751.1 1752516 1752683 D COG0267; 50S ribosomal subunit protein L33 1752516..1752683 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951511 YP_002924653.1 CDS lgt NC_012751.1 1752936 1753787 D COG0682; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase 1752936..1753787 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951512 YP_002924654.1 CDS thyA NC_012751.1 1753817 1754611 D COG0207; thymidylate synthetase 1753817..1754611 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951513 YP_002924655.1 CDS tusE NC_012751.1 1754614 1754958 D COG2920; tRNA 2-thiouridine synthesizing sulfurtransferase E 1754614..1754958 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951514 YP_002924656.1 CDS sbcB NC_012751.1 1755084 1756556 R COG2925; exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase complement(1755084..1756556) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951516 YP_002924657.1 CDS hemN NC_012751.1 1756640 1757770 R COG0635; coproporphyrinogen III oxidase, O2-independent, SAM and NAD(P)H dependent complement(1756640..1757770) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951517 YP_002924658.1 CDS rdgB NC_012751.1 1757763 1758365 R COG0127; dITP/dXTP pyrophosphatase complement(1757763..1758365) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951518 YP_002924659.1 CDS HDEF_1924 NC_012751.1 1758391 1758945 R COG0762; hypothetical protein complement(1758391..1758945) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951519 YP_002924660.1 CDS HDEF_1923 NC_012751.1 1758911 1759042 D hypothetical protein 1758911..1759042 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951521 YP_002924661.1 CDS guaB NC_012751.1 1759200 1760642 D COG0516; IMP dehydrogenase 1759200..1760642 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951520 YP_002924662.1 CDS guaA NC_012751.1 1760786 1762363 D COG0519; GMP synthetase (glutamine aminotransferase) 1760786..1762363 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951522 YP_002924663.1 CDS pgpA NC_012751.1 1762502 1762984 R COG1267; phosphatidylglycerophosphatase A complement(1762502..1762984) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951523 YP_002924664.1 CDS thiL NC_012751.1 1762987 1763994 R COG0611; thiamin-monophosphate kinase complement(1762987..1763994) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951524 YP_002924665.1 CDS nusB NC_012751.1 1764042 1764497 R COG0781; transcription termination; L factor complement(1764042..1764497) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951525 YP_002924666.1 CDS ribE NC_012751.1 1764509 1765006 R COG0054; riboflavin synthase, alpha chain complement(1764509..1765006) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951526 YP_002924667.1 CDS HDEF_1931 NC_012751.1 1765157 1765288 D hypothetical protein 1765157..1765288 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951527 YP_002924668.1 CDS HDEF_1932 NC_012751.1 1765285 1765704 R hypothetical protein complement(1765285..1765704) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951528 YP_002924669.1 CDS rtxA_23 NC_012751.1 1765691 1766521 R Possible N terminal truncation, paired with HDEF_1936; RTX-family protein-23 complement(1765691..1766521) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951529 YP_002924670.1 CDS HDEF_1934 NC_012751.1 1766642 1767019 D ISHde1, transposase 1766642..1767019 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951530 YP_002924671.1 CDS HDEF_1935 NC_012751.1 1767060 1767464 D ISHde1, transposase 1767060..1767464 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951531 YP_002924672.1 CDS rtxA_22 NC_012751.1 1767480 1771538 R Possible C terminal truncation, paired with HDEF_1933; RTX-family protein-22 complement(1767480..1771538) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951532 YP_002924673.1 CDS HDEF_1937 NC_012751.1 1772186 1773898 D reverse transcriptase 1772186..1773898 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951963 YP_002924674.1 CDS HDEF_1938 NC_012751.1 1773950 1774060 R hypothetical protein complement(1773950..1774060) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951534 YP_002924675.1 CDS ruvB NC_012751.1 1774128 1775129 R COG2255; Holliday junction helicase, subunit B complement(1774128..1775129) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951535 YP_002924676.1 CDS ruvA NC_012751.1 1775163 1775777 R COG0632; Holliday junction helicase, subunit A complement(1775163..1775777) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951536 YP_002924677.1 CDS pyrB NC_012751.1 1775813 1776733 R COG0540; aspartate carbamoyltransferase, catalytic subunit complement(1775813..1776733) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951537 YP_002924678.1 CDS HDEF_1942 NC_012751.1 1776800 1777654 R COG1660; hypothetical protein complement(1776800..1777654) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951538 YP_002924679.1 CDS ptsN NC_012751.1 1777752 1778222 R COG1762; PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(1777752..1778222) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951539 YP_002924680.1 CDS yhbG NC_012751.1 1778303 1779028 R COG1137; transport protein (ABC superfamily, atp_bind) complement(1778303..1779028) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951540 YP_002924681.1 CDS HDEF_1945 NC_012751.1 1779028 1779573 R COG1934; hypothetical protein complement(1779028..1779573) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951541 YP_002924682.1 CDS HDEF_1946 NC_012751.1 1779548 1780165 R COG3117; hypothetical protein complement(1779548..1780165) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951542 YP_002924683.1 CDS kdsC NC_012751.1 1780179 1780736 R COG1778; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1780179..1780736) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951543 YP_002924684.1 CDS kdsD NC_012751.1 1780752 1781729 R COG0794; D-arabinose 5-phosphate isomerase complement(1780752..1781729) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951544 YP_002924685.1 CDS yrbF NC_012751.1 1782130 1782888 D COG1127; organic solvent ABC transporter ATP-binding protein 1782130..1782888 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951546 YP_002924686.1 CDS yrbE NC_012751.1 1782916 1783701 D COG0767; ABC transporter permease 1782916..1783701 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951547 YP_002924687.1 CDS yrbD NC_012751.1 1783704 1784213 D COG1463; organic solvent ABC transporter cytoplasmic membrane protein 1783704..1784213 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951548 YP_002924688.1 CDS HDEF_1953 NC_012751.1 1784229 1784852 D resistance to organic solvents, auxiliary component; COG2854; ABC transporter 1784229..1784852 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951549 YP_002924689.1 CDS bolA_2 NC_012751.1 1784865 1785113 D COG5007; hypothetical protein 1784865..1785113 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951550 YP_002924690.1 CDS murA NC_012751.1 1785148 1786416 D COG0766; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1785148..1786416 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951551 YP_002924691.1 CDS can NC_012751.1 1786489 1787148 D COG0288; carbonic anhydrase 1786489..1787148 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951552 YP_002924692.1 CDS HDEF_1957 NC_012751.1 1787585 1790179 R C terminal truncation; inner membrane protein complement(1787585..1790179) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951553 YP_002924693.1 CDS HDEF_1958 NC_012751.1 1790353 1791075 D hypothetical protein 1790353..1791075 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951554 YP_002924694.1 CDS siiC NC_012751.1 1792198 1793526 D COG1538; type I transport system, outer membrane efflux protein 1792198..1793526 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951556 YP_002924695.1 CDS siiD NC_012751.1 1793531 1794805 D COG0845; type I transport system, membrane permease HylD family 1793531..1794805 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951557 YP_002924696.1 CDS glmM NC_012751.1 1794890 1796233 R COG1109; phosphoglucosamine mutase complement(1794890..1796233) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951558 YP_002924697.1 CDS folP NC_012751.1 1796240 1797082 R COG0294; 7,8-dihydropteroate synthase complement(1796240..1797082) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951559 YP_002924698.1 CDS hflB NC_012751.1 1797319 1799244 R COG0465; ATP-dependent zinc-metallo protease complement(1797319..1799244) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951560 YP_002924699.1 CDS rrmJ NC_012751.1 1799304 1799930 R COG0293; 23S rRNA methyltransferase complement(1799304..1799930) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951561 YP_002924700.1 CDS greA NC_012751.1 1800082 1800558 R COG0782; transcription elongation factor, cleaves 3' nucleotide of paused mRNA complement(1800082..1800558) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951562 YP_002924701.1 CDS djlA NC_012751.1 1800974 1801804 D COG1076; co-chaperone of DnaK (DnaJ-like), implicated in regulation of colanic acid capsule 1800974..1801804 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951563 YP_002924702.1 CDS HDEF_1968 NC_012751.1 1801820 1802311 R COG1666; hypothetical protein complement(1801820..1802311) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951564 YP_002924703.1 CDS exoY_2 NC_012751.1 1802644 1804050 R adenylate cyclase-2 complement(1802644..1804050) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951565 YP_002924704.1 CDS HDEF_1970 NC_012751.1 1804480 1805175 R hypothetical protein complement(1804480..1805175) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951566 YP_002924705.1 CDS HDEF_1971 NC_012751.1 1805231 1805929 R hypothetical protein complement(1805231..1805929) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951567 YP_002924706.1 CDS HDEF_1972 NC_012751.1 1806212 1806577 R hypothetical protein complement(1806212..1806577) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951568 YP_002924707.1 CDS cro_2 NC_012751.1 1807621 1808079 R phage transcriptional regulatory protein complement(1807621..1808079) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951570 YP_002924708.1 CDS HDEF_1975 NC_012751.1 1808191 1808778 D phage repressor protein 1808191..1808778 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951571 YP_002924709.1 CDS HDEF_1976 NC_012751.1 1809335 1809427 D hypothetical protein 1809335..1809427 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951572 YP_002924710.1 CDS HDEF_1977 NC_012751.1 1809533 1809928 R similar to APSE protein P47; hypothetical protein complement(1809533..1809928) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951573 YP_002924711.1 CDS HDEF_1978 NC_012751.1 1810164 1810343 D hypothetical protein 1810164..1810343 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951574 YP_002924712.1 CDS HDEF_1979 NC_012751.1 1810325 1811008 D hypothetical protein 1810325..1811008 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951575 YP_002924713.1 CDS HDEF_1980 NC_012751.1 1811005 1811565 D hypothetical protein 1811005..1811565 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951576 YP_002924714.1 CDS HDEF_1981 NC_012751.1 1811583 1812089 D phage-related exonuclease 1811583..1812089 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951577 YP_002924715.1 CDS HDEF_1983 NC_012751.1 1812272 1812637 D ISHde2, transposase 1812272..1812637 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951579 YP_002924716.1 CDS HDEF_1984 NC_012751.1 1812778 1813059 D ISHde2, transposase 1812778..1813059 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951580 YP_002924717.1 CDS HDEF_1985 NC_012751.1 1813259 1813858 D glyoxalase 1813259..1813858 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951581 YP_002924718.1 CDS HDEF_1986 NC_012751.1 1814087 1814248 R hypothetical protein complement(1814087..1814248) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951582 YP_002924719.1 CDS HDEF_1987 NC_012751.1 1814166 1814402 R hypothetical protein complement(1814166..1814402) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951583 YP_002924720.1 CDS HDEF_1990 NC_012751.1 1815306 1816016 D transcriptional regulator 1815306..1816016 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951586 YP_002924721.1 CDS HDEF_1991 NC_012751.1 1816042 1816251 R COG2155; hypothetical protein complement(1816042..1816251) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951587 YP_002924722.1 CDS ldhA NC_012751.1 1816688 1817470 D COG1052; fermentative D-lactate dehydrogenase, NAD-dependent 1816688..1817470 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951588 YP_002924723.1 CDS HDEF_1993 NC_012751.1 1817638 1817733 D hypothetical protein 1817638..1817733 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951589 YP_002924724.1 CDS HDEF_1994 NC_012751.1 1817800 1818474 R COG1028; C factor cell-cell signaling protein complement(1817800..1818474) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951590 YP_002924725.1 CDS cyoB_2 NC_012751.1 1819054 1821045 D COG0843; cytochrome o ubiquinol oxidase, subunit I -2 1819054..1821045 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951592 YP_002924726.1 CDS HDEF_1997 NC_012751.1 1821435 1821869 D hypothetical protein 1821435..1821869 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951593 YP_002924727.1 CDS HDEF_1998 NC_012751.1 1822029 1822547 D N terminal truncation; IS4-like transposase 1822029..1822547 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951594 YP_002924728.1 CDS HDEF_1999 NC_012751.1 1822889 1823188 R hypothetical protein complement(1822889..1823188) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951595 YP_002924729.1 CDS HDEF_2000 NC_012751.1 1824076 1825260 D N terminus, interrupted by GII intron; reverse transcriptase 1824076..1825260 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951964 YP_002924730.1 CDS HDEF_2001 NC_012751.1 1825337 1827019 R reverse transcriptase complement(1825337..1827019) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951965 YP_002924731.1 CDS HDEF_2002 NC_012751.1 1827639 1828103 D C terminus, interrupted by GII intron; reverse transcriptase 1827639..1828103 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951966 YP_002924732.1 CDS HDEF_2004 NC_012751.1 1829128 1829943 D N terminal truncation; hypothetical protein 1829128..1829943 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951602 YP_002924733.1 CDS HDEF_2006 NC_012751.1 1830015 1830407 D N and C terminal truncations; phage DNA-directed DNA polymerase 1830015..1830407 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951601 YP_002924734.1 CDS HDEF_2007 NC_012751.1 1830359 1830709 R N terminal truncation; phage integrase complement(1830359..1830709) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951603 YP_002924735.1 CDS mnmE NC_012751.1 1830699 1832075 R COG0486; GTPase involved in tRNA modification and in thiophene and furan oxidation complement(1830699..1832075) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951604 YP_002924736.1 CDS yidC NC_012751.1 1832189 1833832 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(1832189..1833832) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951605 YP_002924737.1 CDS HDEF_2010 NC_012751.1 1833835 1834059 R COG0759; hypothetical protein complement(1833835..1834059) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951606 YP_002924738.1 CDS rnpA NC_012751.1 1834083 1834430 R COG0594; RNase P, protein C5 component, processes tRNA, 4.5S RNA complement(1834083..1834430) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951607 YP_002924739.1 CDS rpmH NC_012751.1 1834445 1834585 R COG0230; 50S ribosomal subunit protein L34 complement(1834445..1834585) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951608 YP_002924740.1 CDS HDEF_2013 NC_012751.1 1834542 1834643 R hypothetical protein complement(1834542..1834643) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951609 YP_002924741.1 CDS HDEF_2014 NC_012751.1 1835014 1836540 D hypothetical protein 1835014..1836540 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951610 YP_002924742.1 CDS HDEF_2015 NC_012751.1 1836573 1841192 D hypothetical protein 1836573..1841192 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951611 YP_002924743.1 CDS rtxA_24 NC_012751.1 1841179 1841625 D Possible C terminal truncation, paired with HDEF_2017; RTX-family protein-24 1841179..1841625 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951612 YP_002924744.1 CDS rtxA_25 NC_012751.1 1841695 1843023 D Possible N terminal truncation, paired with HDEF_2016; RTX-family protein-25 1841695..1843023 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951613 YP_002924745.1 CDS dusA NC_012751.1 1843105 1844136 R COG0042; tRNA-dihydrouridine synthase A complement(1843105..1844136) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951614 YP_002924746.1 CDS HDEF_2020 NC_012751.1 1845201 1845329 R hypothetical protein complement(1845201..1845329) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951616 YP_002924747.1 CDS HDEF_2021 NC_012751.1 1845644 1846204 D hypothetical protein 1845644..1846204 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951617 YP_002924748.1 CDS HDEF_2022 NC_012751.1 1846252 1846746 R C terminus, interrupted by GII intron; reverse transcriptase complement(1846252..1846746) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951967 YP_002924749.1 CDS HDEF_2023 NC_012751.1 1847366 1849048 D reverse transcriptase 1847366..1849048 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951968 YP_002924750.1 CDS HDEF_2024 NC_012751.1 1849125 1850309 R N terminus, interrupted by GII intron; reverse transcriptase complement(1849125..1850309) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951620 YP_002924751.1 CDS HDEF_2025 NC_012751.1 1851396 1852580 D hypothetical protein 1851396..1852580 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951969 YP_002924752.1 CDS rfe NC_012751.1 1852626 1853699 R COG0472; UDP-GlcNAc:UDPphosphate GlcNAc-1-phosphate transferase complement(1852626..1853699) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951622 YP_002924753.1 CDS rho NC_012751.1 1853776 1855035 R COG1158; transcription termination factor Rho; polarity suppressor complement(1853776..1855035) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951623 YP_002924754.1 CDS HDEF_2028 NC_012751.1 1855464 1855571 D hypothetical protein 1855464..1855571 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951624 YP_002924755.1 CDS purH NC_012751.1 1861750 1863351 D COG0138; bifunctional IMP cyclohydrolase (N-terminal); phosphoribosylaminoimidazolecarboxamide formyltransferase (C-terminal) 1861750..1863351 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951631 YP_002924756.1 CDS purD NC_012751.1 1863433 1864728 D COG0151; phosphoribosylglycinamide synthetase (GAR synthetase) 1863433..1864728 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951632 YP_002924757.1 CDS trkH NC_012751.1 1864804 1866255 D COG0168; potassium transporter 1864804..1866255 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951633 YP_002924758.1 CDS leuS NC_012751.1 1866346 1868955 D COG0495; leucine tRNA synthetase 1866346..1868955 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951634 YP_002924759.1 CDS rlpB NC_012751.1 1868948 1869535 D COG2980; minor lipoprotein 1868948..1869535 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951635 YP_002924760.1 CDS holA NC_012751.1 1869532 1870590 D COG1466; DNA polymerase III, delta subunit, probably ATP hydrolase 1869532..1870590 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951636 YP_002924761.1 CDS nadD NC_012751.1 1870580 1871263 D COG1057; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-requiring 1870580..1871263 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951637 YP_002924762.1 CDS lpd_2 NC_012751.1 1871451 1872884 R sensitivity to phages, colicins; E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1871451..1872884) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951638 YP_002924763.1 CDS aceF NC_012751.1 1872901 1874496 R COG0508; pyruvate dehydrogenase, dihydrolipoyltransacetylase subunit complement(1872901..1874496) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951639 YP_002924764.1 CDS aceE NC_012751.1 1874523 1877189 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(1874523..1877189) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951640 YP_002924765.1 CDS HDEF_2046 NC_012751.1 1878313 1878411 R hypothetical protein complement(1878313..1878411) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951642 YP_002924766.1 CDS HDEF_2049 NC_012751.1 1879901 1880305 R ISHde1, transposase complement(1879901..1880305) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951645 YP_002924767.1 CDS HDEF_2050 NC_012751.1 1880346 1880723 R ISHde1, transposase complement(1880346..1880723) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951646 YP_002924768.1 CDS HDEF_2052 NC_012751.1 1882023 1882340 R C terminal truncation; COG3561; phage anti-repressor protein complement(1882023..1882340) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951648 YP_002924769.1 CDS HDEF_2053 NC_012751.1 1882458 1883228 R phage antirepressor complement(1882458..1883228) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951649 YP_002924770.1 CDS HDEF_2054 NC_012751.1 1883332 1883424 R hypothetical protein complement(1883332..1883424) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951650 YP_002924771.1 CDS HDEF_2055 NC_012751.1 1883506 1884297 R phage anti-repressor protein complement(1883506..1884297) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951651 YP_002924772.1 CDS HDEF_2056 NC_012751.1 1884485 1884862 R hypothetical protein complement(1884485..1884862) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951652 YP_002924773.1 CDS HDEF_2057 NC_012751.1 1885105 1885620 R COG1525; SNase-like micrococcal nuclease complement(1885105..1885620) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951653 YP_002924774.1 CDS HDEF_2058 NC_012751.1 1886140 1886661 D hypothetical protein 1886140..1886661 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951654 YP_002924775.1 CDS HDEF_2060 NC_012751.1 1887205 1887828 R COG2197; transcriptional regulator complement(1887205..1887828) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951656 YP_002924776.1 CDS purU NC_012751.1 1887924 1888775 R COG0788; formyltetrahydrofolate hydrolase complement(1887924..1888775) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951657 YP_002924777.1 CDS HDEF_2062 NC_012751.1 1888796 1888954 D hypothetical protein 1888796..1888954 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951658 YP_002924778.1 CDS hns NC_012751.1 1889017 1889439 R COG2916; transcriptional regulator, DNA-binding protein HLP-II (HU, BH2, HD, NS), increases DNA thermal stability complement(1889017..1889439) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951659 YP_002924779.1 CDS cls NC_012751.1 1889929 1891395 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(1889929..1891395) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951660 YP_002924780.1 CDS ompX NC_012751.1 1892001 1892579 D outer membrane protease, receptor for phage OX2 1892001..1892579 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951661 YP_002924781.1 CDS tonB NC_012751.1 1892656 1893378 D energy transducer; uptake of iron, cyanocobalimin 1892656..1893378 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951662 YP_002924782.1 CDS ispZ NC_012751.1 1893431 1893973 R COG2917; membrane protein, intracellular septation protein complement(1893431..1893973) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951663 YP_002924783.1 CDS HDEF_2068 NC_012751.1 1893975 1894730 R hypothetical protein complement(1893975..1894730) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951664 YP_002924784.1 CDS asd NC_012751.1 1895268 1896377 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1895268..1896377 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951666 YP_002924785.1 CDS HDEF_2071 NC_012751.1 1896482 1897339 D glycosyltransferase group 2 1896482..1897339 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951667 YP_002924786.1 CDS HDEF_2072 NC_012751.1 1897368 1898621 D COG3307; O-antigen biosynthesis protein 1897368..1898621 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951668 YP_002924787.1 CDS rpiA NC_012751.1 1898676 1899332 D COG0120; ribose-5-phosphate isomerase A 1898676..1899332 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951669 YP_002924788.1 CDS serA NC_012751.1 1899339 1900580 D COG0111; D-3-phosphoglycerate dehydrogenase 1899339..1900580 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951670 YP_002924789.1 CDS HDEF_2075 NC_012751.1 1900594 1901205 R COG0212; 5-formyltetrahydrofolate cyclo-ligase complement(1900594..1901205) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951671 YP_002924790.1 CDS zapA NC_012751.1 1901630 1901965 R COG3027; Z-ring-associated protein complement(1901630..1901965) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951672 YP_002924791.1 CDS HDEF_2078 NC_012751.1 1902187 1902510 R hypothetical protein complement(1902187..1902510) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951673 YP_002924792.1 CDS HDEF_2077 NC_012751.1 1902509 1902622 D hypothetical protein 1902509..1902622 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951675 YP_002924793.1 CDS HDEF_2079 NC_012751.1 1902632 1903642 D COG0354; aminomethyltransferase 1902632..1903642 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951674 YP_002924794.1 CDS HDEF_2080 NC_012751.1 1903594 1904808 R COG0654; hypothetical protein complement(1903594..1904808) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951676 YP_002924795.1 CDS HDEF_2081 NC_012751.1 1905017 1905538 D COG2840; hypothetical protein 1905017..1905538 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951677 YP_002924796.1 CDS HDEF_2082 NC_012751.1 1905574 1905678 R hypothetical protein complement(1905574..1905678) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951678 YP_002924797.1 CDS prsA NC_012751.1 1905731 1906678 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1905731..1906678 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951679 YP_002924798.1 CDS pth NC_012751.1 1906716 1907309 D COG0193; peptidyl-tRNA hydrolase 1906716..1907309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951680 YP_002924799.1 CDS sxy NC_012751.1 1907582 1908199 D COG3070; hypothetical protein 1907582..1908199 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951681 YP_002924800.1 CDS apt NC_012751.1 1908348 1908905 D COG0503; adenine phosphoribosyltransferase 1908348..1908905 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951682 YP_002924801.1 CDS dnaX NC_012751.1 1908949 1910871 D COG2812; DNA polymerase III, tau and gamma subunits; DNA elongation factor III 1908949..1910871 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951683 YP_002924802.1 CDS HDEF_2088 NC_012751.1 1910913 1911239 D COG0718; hypothetical protein 1910913..1911239 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951684 YP_002924803.1 CDS recR NC_012751.1 1911243 1911851 D COG0353; gap repair protein 1911243..1911851 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951685 YP_002924804.1 CDS HDEF_2090 NC_012751.1 1911886 1911987 D hypothetical protein 1911886..1911987 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951686 YP_002924805.1 CDS HDEF_2091 NC_012751.1 1911910 1912020 R hypothetical protein complement(1911910..1912020) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951687 YP_002924806.1 CDS HDEF_2092 NC_012751.1 1912667 1912798 D hypothetical protein 1912667..1912798 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951688 YP_002924807.1 CDS htpG NC_012751.1 1913030 1914952 D molecular chaperone; heat shock protein 90 1913030..1914952 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951689 YP_002924808.1 CDS HDEF_2094 NC_012751.1 1914967 1915068 D hypothetical protein 1914967..1915068 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951690 YP_002924809.1 CDS adk NC_012751.1 1915122 1915772 D COG0563; adenylate kinase 1915122..1915772 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951691 YP_002924810.1 CDS secA NC_012751.1 1916444 1919164 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(1916444..1919164) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951692 YP_002924811.1 CDS HDEF_2097 NC_012751.1 1919269 1919817 D COG4701; hypothetical protein 1919269..1919817 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951693 YP_002924812.1 CDS asnB NC_012751.1 1919868 1921532 R functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B complement(1919868..1921532) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951694 YP_002924813.1 CDS HDEF_2099 NC_012751.1 1921546 1923261 R COG3083; sulfatase complement(1921546..1923261) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951695 YP_002924814.1 CDS fabI NC_012751.1 1923496 1924275 R COG0623; enoyl-ACP reductase (NADH) complement(1923496..1924275) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951696 YP_002924815.1 CDS sapF NC_012751.1 1924370 1925185 R COG4167; peptide transport protein (ABC superfamily, atp_bind) complement(1924370..1925185) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951697 YP_002924816.1 CDS sapD NC_012751.1 1925185 1926177 R COG4170; peptide transport protein (ABC superfamily, atp_bind) complement(1925185..1926177) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951698 YP_002924817.1 CDS sapC NC_012751.1 1926177 1927076 R COG4171; peptide transport protein (ABC superfamily, membrane) complement(1926177..1927076) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951699 YP_002924818.1 CDS sapB NC_012751.1 1927063 1928025 R COG4168; peptide transport protein (ABC superfamily, membrane) complement(1927063..1928025) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951700 YP_002924819.1 CDS lpcA NC_012751.1 1928804 1929424 R COG0279; D-sedoheptulose 7-phosphate isomerase complement(1928804..1929424) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951702 YP_002924820.1 CDS rpoH NC_012751.1 1929622 1930479 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1929622..1930479 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951703 YP_002924821.1 CDS fre NC_012751.1 1930525 1931247 R NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin; FMN reductase complement(1930525..1931247) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951704 YP_002924822.1 CDS ubiD NC_012751.1 1931248 1932735 R COG0043; 3-octaprenyl-4-hydroxybenzoate decarboxylase complement(1931248..1932735) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951705 YP_002924823.1 CDS rfaH NC_012751.1 1932857 1933345 D COG0250; transcriptional activator RfaH 1932857..1933345 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951706 YP_002924824.1 CDS hemB NC_012751.1 1933352 1934368 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1933352..1934368) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951707 YP_002924825.1 CDS HDEF_2113 NC_012751.1 1934645 1935202 R COG3028; hypothetical protein complement(1934645..1935202) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951709 YP_002924826.1 CDS HDEF_2114 NC_012751.1 1935228 1936388 R COG0754; glutathionylspermidine synthase complement(1935228..1936388) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951710 YP_002924827.1 CDS HDEF_2115 NC_012751.1 1936409 1937101 R COG5463; hypothetical protein complement(1936409..1937101) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951711 YP_002924828.1 CDS prmC NC_012751.1 1937207 1938064 R COG2890; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 complement(1937207..1938064) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951712 YP_002924829.1 CDS prfA NC_012751.1 1938066 1939148 R COG0216; peptide chain release factor RF-1 complement(1938066..1939148) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951713 YP_002924830.1 CDS lolB NC_012751.1 1940662 1941312 D COG3017; outer membrane component involved in lipoprotein localization 1940662..1941312 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951715 YP_002924831.1 CDS ispE NC_012751.1 1941309 1942184 D COG1947; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase 1941309..1942184 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951716 YP_002924832.1 CDS ydjN NC_012751.1 1942186 1943541 R COG1823; transport protein complement(1942186..1943541) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951717 YP_002924833.1 CDS ydjM NC_012751.1 1943541 1944092 R COG1988; LexA regulated protein complement(1943541..1944092) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951718 YP_002924834.1 CDS yfeD NC_012751.1 1944089 1944919 R COG1108; iron ABC transporter permease complement(1944089..1944919) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951719 YP_002924835.1 CDS yfeC NC_012751.1 1944919 1945794 R COG1108; chelated iron transport system membrane protein complement(1944919..1945794) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951720 YP_002924836.1 CDS yfeB NC_012751.1 1945795 1946685 R COG1121; iron ABC transporter ATP-binding protein complement(1945795..1946685) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951721 YP_002924837.1 CDS yfeA NC_012751.1 1946682 1947665 R COG0803; iron ABC transporter periplasmic iron binding protein complement(1946682..1947665) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951722 YP_002924838.1 CDS yafD NC_012751.1 1947813 1948619 D COG3021; hypothetical protein 1947813..1948619 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951723 YP_002924839.1 CDS HDEF_2128 NC_012751.1 1948630 1949865 R COG0741; membrane-bound lytic murein transglycosylase complement(1948630..1949865) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951724 YP_002924840.1 CDS gloB NC_012751.1 1950038 1950787 R COG0491; hydroxyacylglutathione hydrolase complement(1950038..1950787) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951725 YP_002924841.1 CDS yafS NC_012751.1 1950841 1951548 D COG0500; S-adenosyl-L-methionine-dependent methyltransferase 1950841..1951548 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951726 YP_002924842.1 CDS hmuR NC_012751.1 1951836 1953884 D COG1629; TonB-dependent hemin receptor 1951836..1953884 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951727 YP_002924843.1 CDS hmuS NC_012751.1 1953962 1955017 D COG3720; hemin transport 1953962..1955017 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951728 YP_002924844.1 CDS hmuT NC_012751.1 1955034 1955855 D COG4558; hemin ABC transporter periplasmic substrate-binding 1955034..1955855 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951729 YP_002924845.1 CDS hmuU NC_012751.1 1955852 1956850 D COG0609; hemin ABC transporter permease 1955852..1956850 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951730 YP_002924846.1 CDS hmuV NC_012751.1 1956841 1957671 D with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 1956841..1957671 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951731 YP_002924847.1 CDS HDEF_2136 NC_012751.1 1957730 1957828 R hypothetical protein complement(1957730..1957828) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951732 YP_002924848.1 CDS HDEF_2137 NC_012751.1 1957810 1958121 R C terminal truncation, similar to APSE protein P43; COG3617; antirepressor complement(1957810..1958121) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951733 YP_002924849.1 CDS HDEF_2138 NC_012751.1 1958235 1958594 D ISHde6, transposase 1958235..1958594 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951734 YP_002924850.1 CDS HDEF_2139 NC_012751.1 1958666 1959058 D ISHde6, transposase 1958666..1959058 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951735 YP_002924851.1 CDS HDEF_2140 NC_012751.1 1959089 1959370 R ISHde2, transposase complement(1959089..1959370) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951736 YP_002924852.1 CDS HDEF_2141 NC_012751.1 1959511 1959876 R ISHde2, transposase complement(1959511..1959876) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951737 YP_002924853.1 CDS HDEF_2143 NC_012751.1 1960439 1960657 D hypothetical protein 1960439..1960657 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951739 YP_002924854.1 CDS HDEF_2144 NC_012751.1 1960678 1960929 R hypothetical protein complement(1960678..1960929) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951740 YP_002924855.1 CDS HDEF_2145 NC_012751.1 1960926 1961555 R COG1192; plasmid partition protein ParA-like protein complement(1960926..1961555) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951741 YP_002924856.1 CDS HDEF_2146 NC_012751.1 1961724 1961909 R hypothetical protein complement(1961724..1961909) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951742 YP_002924857.1 CDS rtxA_26 NC_012751.1 1962144 1963511 D RTX-family protein-26 1962144..1963511 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951743 YP_002924858.1 CDS HDEF_2149 NC_012751.1 1964886 1965281 R COG1487; hypothetical protein complement(1964886..1965281) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951745 YP_002924859.1 CDS HDEF_2150 NC_012751.1 1965278 1965514 R hypothetical protein complement(1965278..1965514) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951746 YP_002924860.1 CDS HDEF_2151 NC_012751.1 1965879 1966439 R COG1961; inversion of adjacent DNA complement(1965879..1966439) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951747 YP_002924861.1 CDS HDEF_2152 NC_012751.1 1966588 1967079 D acetyltransferase 1966588..1967079 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951748 YP_002924862.1 CDS HDEF_2153 NC_012751.1 1967321 1967932 D COG3547; ISHde7, transposase 1967321..1967932 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951749 YP_002924863.1 CDS HDEF_2154 NC_012751.1 1967901 1968251 D COG3547; ISHde7, transposase 1967901..1968251 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951750 YP_002924864.1 CDS HDEF_2156 NC_012751.1 1968539 1968703 R hypothetical protein complement(1968539..1968703) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951752 YP_002924865.1 CDS HDEF_2158 NC_012751.1 1969761 1969988 D addiction module antitoxin 1969761..1969988 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951754 YP_002924866.1 CDS HDEF_2159 NC_012751.1 1969990 1970319 D addiction module toxin 1969990..1970319 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951755 YP_002924867.1 CDS HDEF_2160 NC_012751.1 1970337 1970456 R hypothetical protein complement(1970337..1970456) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951756 YP_002924868.1 CDS HDEF_2161 NC_012751.1 1970495 1970623 R hypothetical protein complement(1970495..1970623) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951757 YP_002924869.1 CDS HDEF_2162 NC_012751.1 1970659 1970790 D hypothetical protein 1970659..1970790 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951758 YP_002924870.1 CDS ybiP NC_012751.1 1970823 1972376 R COG2194; transmembrane protein (N-terminal); phosphatase (C-terminal) complement(1970823..1972376) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951759 YP_002924871.1 CDS HDEF_2164 NC_012751.1 1972798 1972932 D hypothetical protein 1972798..1972932 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951760 YP_002924872.1 CDS HDEF_2165 NC_012751.1 1973060 1973746 R hypothetical protein complement(1973060..1973746) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951761 YP_002924873.1 CDS HDEF_2167 NC_012751.1 1975404 1975589 D hypothetical protein 1975404..1975589 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951763 YP_002924874.1 CDS HDEF_2170 NC_012751.1 1976270 1976713 R hypothetical protein complement(1976270..1976713) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951765 YP_002924876.1 CDS stbC_2 NC_012751.1 1976513 1976770 D COG4691; addiction module 1976513..1976770 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951767 YP_002924877.1 CDS HDEF_2172 NC_012751.1 1977922 1978026 R hypothetical protein complement(1977922..1978026) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951766 YP_002924878.1 CDS HDEF_2173 NC_012751.1 1978397 1979305 D hypothetical protein 1978397..1979305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951768 YP_002924879.1 CDS HDEF_2174 NC_012751.1 1979229 1981364 D hypothetical protein 1979229..1981364 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951769 YP_002924880.1 CDS HDEF_2175 NC_012751.1 1981443 1982051 R N terminal truncation; COG3316; transposase complement(1981443..1982051) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951770 YP_002924881.1 CDS HDEF_2176 NC_012751.1 1982441 1983076 D plasmid partition protein ParA-like protein 1982441..1983076 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951771 YP_002924882.1 CDS HDEF_2177 NC_012751.1 1983073 1983309 D hypothetical protein 1983073..1983309 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951772 YP_002924883.1 CDS mobB_5 NC_012751.1 1984433 1984741 D MobB relaxase/mobilization protein 1984433..1984741 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951774 YP_002924884.1 CDS HDEF_2181 NC_012751.1 1985315 1985719 R ISHde1, transposase complement(1985315..1985719) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951776 YP_002924885.1 CDS HDEF_2182 NC_012751.1 1985760 1986137 R ISHde1, transposase complement(1985760..1986137) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951777 YP_002924886.1 CDS HDEF_2185 NC_012751.1 1987338 1987652 D COG3514; hypothetical protein 1987338..1987652 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951780 YP_002924887.1 CDS HDEF_2187 NC_012751.1 1988280 1989200 R phage tail fiber protein complement(1988280..1989200) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951782 YP_002924888.1 CDS HDEF_2188 NC_012751.1 1989255 1989659 R ISHde1, transposase complement(1989255..1989659) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951783 YP_002924889.1 CDS HDEF_2189 NC_012751.1 1989700 1990077 R ISHde1, transposase complement(1989700..1990077) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951784 YP_002924890.1 CDS HDEF_2192 NC_012751.1 1991278 1991592 D COG3514; hypothetical protein 1991278..1991592 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951787 YP_002924891.1 CDS HDEF_2194 NC_012751.1 1992220 1993140 R phage tail fiber protein complement(1992220..1993140) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951789 YP_002924892.1 CDS HDEF_2195 NC_012751.1 1993195 1993599 R ISHde1, transposase complement(1993195..1993599) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951790 YP_002924893.1 CDS HDEF_2196 NC_012751.1 1993640 1994017 R ISHde1, transposase complement(1993640..1994017) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951791 YP_002924894.1 CDS HDEF_2199 NC_012751.1 1995218 1995532 D COG3514; hypothetical protein 1995218..1995532 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951794 YP_002924895.1 CDS HDEF_2201 NC_012751.1 1996160 1997080 R phage tail fiber protein complement(1996160..1997080) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951796 YP_002924896.1 CDS HDEF_2202 NC_012751.1 1997135 1997539 R ISHde1, transposase complement(1997135..1997539) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951797 YP_002924897.1 CDS HDEF_2203 NC_012751.1 1997580 1997957 R ISHde1, transposase complement(1997580..1997957) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951798 YP_002924898.1 CDS HDEF_2204 NC_012751.1 1998008 1998517 R phage tail protein I complement(1998008..1998517) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951799 YP_002924899.1 CDS HDEF_2205 NC_012751.1 1998519 1999400 R COG3948; phage baseplate J-like protein complement(1998519..1999400) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951800 YP_002924900.1 CDS HDEF_2206 NC_012751.1 1999397 1999732 R COG3628; phage T4-like baseplate assembly protein with lysozyme activity complement(1999397..1999732) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951801 YP_002924901.1 CDS HDEF_2207 NC_012751.1 1999729 2000307 R phage baseplate assembly protein complement(1999729..2000307) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951802 YP_002924902.1 CDS HDEF_2208 NC_012751.1 2000304 2000807 R hypothetical protein complement(2000304..2000807) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951803 YP_002924903.1 CDS HDEF_2209 NC_012751.1 2000835 2001284 R phage virion morphogenesis protein complement(2000835..2001284) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951804 YP_002924904.1 CDS HDEF_2210 NC_012751.1 2001284 2001712 R hypothetical protein complement(2001284..2001712) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951805 YP_002924905.1 CDS HDEF_2211 NC_012751.1 2001719 2002003 R hypothetical protein complement(2001719..2002003) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951806 YP_002924906.1 CDS HDEF_2212 NC_012751.1 2002005 2002787 R C terminal truncation; Mu-like prophage I protein complement(2002005..2002787) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951807 YP_002924907.1 CDS HDEF_2213 NC_012751.1 2002914 2003213 R COG3636; addiction module complement(2002914..2003213) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951808 YP_002924908.1 CDS HDEF_2214 NC_012751.1 2003210 2003506 R COG3657; addiction module complement(2003210..2003506) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951809 YP_002924909.1 CDS HDEF_2215 NC_012751.1 2003548 2003679 R hypothetical protein complement(2003548..2003679) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951810 YP_002924910.1 CDS HDEF_2216 NC_012751.1 2003661 2004305 R COG2369; Mu-like prophage F protein complement(2003661..2004305) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951811 YP_002924911.1 CDS HDEF_2217 NC_012751.1 2004305 2004751 R hypothetical protein complement(2004305..2004751) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951812 YP_002924912.1 CDS HDEF_2218 NC_012751.1 2005353 2005448 D hypothetical protein 2005353..2005448 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951813 YP_002924913.1 CDS HDEF_2219 NC_012751.1 2005583 2006317 D COG0500; methyltransferase 2005583..2006317 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951814 YP_002924914.1 CDS HDEF_2220 NC_012751.1 2006568 2007956 R sugar transporter major facilitator superfamily complement(2006568..2007956) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951815 YP_002924915.1 CDS gldA NC_012751.1 2008037 2008468 R C terminal truncation; COG0371; glycerol dehydrogenase, NAD complement(2008037..2008468) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951816 YP_002924916.1 CDS HDEF_2222 NC_012751.1 2008913 2009029 D hypothetical protein 2008913..2009029 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951817 YP_002924917.1 CDS HDEF_2223 NC_012751.1 2009164 2009412 D hypothetical protein 2009164..2009412 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951818 YP_002924918.1 CDS HDEF_2224 NC_012751.1 2009583 2009777 D hypothetical protein 2009583..2009777 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951819 YP_002924919.1 CDS HDEF_2226 NC_012751.1 2010764 2011030 D hypothetical protein 2010764..2011030 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951821 YP_002924920.1 CDS HDEF_2229 NC_012751.1 2011747 2012094 R N terminal truncation; transcriptional regulator complement(2011747..2012094) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951824 YP_002924921.1 CDS HDEF_2230 NC_012751.1 2012221 2012463 D hypothetical protein 2012221..2012463 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951825 YP_002924922.1 CDS HDEF_2231 NC_012751.1 2012836 2013147 R COG1872; hypothetical protein complement(2012836..2013147) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951826 YP_002924923.1 CDS msrB_2 NC_012751.1 2013160 2013549 D COG0229; methionine sulfoxide reductase 2013160..2013549 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951827 YP_002924924.1 CDS HDEF_2235 NC_012751.1 2014387 2014698 R N terminal truncation; hypothetical protein complement(2014387..2014698) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951829 YP_002924925.1 CDS HDEF_2234 NC_012751.1 2014671 2014769 D hypothetical protein 2014671..2014769 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951831 YP_002924926.1 CDS HDEF_2236 NC_012751.1 2014886 2014981 R hypothetical protein complement(2014886..2014981) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951830 YP_002924927.1 CDS HDEF_2237 NC_012751.1 2015006 2015734 D hypothetical protein 2015006..2015734 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951832 YP_002924928.1 CDS aexT_2 NC_012751.1 2015765 2016271 D N terminal truncation; COG5585; ADP-ribosyltransferase toxin-2 2015765..2016271 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951833 YP_002924929.1 CDS HDEF_2239 NC_012751.1 2016539 2017726 R hypothetical protein complement(2016539..2017726) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951834 YP_002924930.1 CDS HDEF_2240 NC_012751.1 2017755 2017862 D hypothetical protein 2017755..2017862 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951835 YP_002924931.1 CDS HDEF_2241 NC_012751.1 2018220 2018597 D ISHde1, transposase 2018220..2018597 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951836 YP_002924932.1 CDS HDEF_2242 NC_012751.1 2018638 2019042 D ISHde1, transposase 2018638..2019042 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951837 YP_002924933.1 CDS HDEF_2243 NC_012751.1 2019151 2019297 D hypothetical protein 2019151..2019297 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951838 YP_002924934.1 CDS appA NC_012751.1 2019302 2020609 D phosphoanhydride phosphorylase 2019302..2020609 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951839 YP_002924935.1 CDS ada NC_012751.1 2020756 2021265 D N terminal truncation; COG0350; bifunctional transcriptional regulator of DNA repair (N-terminal); O6-methylguanine-DNA methyltransferase 2020756..2021265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951840 YP_002924936.1 CDS aspA NC_012751.1 2021751 2023181 D COG1027; aspartate ammonia-lyase (aspartase) 2021751..2023181 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951842 YP_002924937.1 CDS ssaU NC_012751.1 2023253 2024311 R member of a type III secretion system which is part of a pathogenicity island in Salmonella, Yersinia and pathogenic Escherichia coli; secretion system apparatus protein SsaU complement(2023253..2024311) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951843 YP_002924938.1 CDS ssaT NC_012751.1 2024314 2025099 R COG4791; type III secretion system apparatus protein complement(2024314..2025099) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951844 YP_002924939.1 CDS ssaS NC_012751.1 2025101 2025370 R COG4794; type III secretion system apparatus protein complement(2025101..2025370) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951845 YP_002924940.1 CDS ssaR NC_012751.1 2025367 2026017 R part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein complement(2025367..2026017) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951846 YP_002924941.1 CDS phoU NC_012751.1 2026160 2026873 R COG0704; transcriptional repressor for high-affinity phosphate uptake complement(2026160..2026873) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951847 YP_002924942.1 CDS pstB NC_012751.1 2026887 2027651 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2026887..2027651) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951848 YP_002924943.1 CDS pstA NC_012751.1 2027807 2028709 R Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PtsA complement(2027807..2028709) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951849 YP_002924944.1 CDS pstC NC_012751.1 2028710 2029666 R part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions; phosphate transporter permease subunit PstC complement(2028710..2029666) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951850 YP_002924945.1 CDS pstS NC_012751.1 2029907 2030926 R COG0226; phosphate ABC transporter complement(2029907..2030926) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951851 YP_002924946.1 CDS HDEF_2258 NC_012751.1 2030991 2031092 R hypothetical protein complement(2030991..2031092) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951852 YP_002924947.1 CDS HDEF_2257 NC_012751.1 2031054 2031155 D hypothetical protein 2031054..2031155 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951854 YP_002924948.1 CDS HDEF_2259 NC_012751.1 2031077 2031169 R hypothetical protein complement(2031077..2031169) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951853 YP_002924949.1 CDS pilM_4 NC_012751.1 2031317 2032153 D PilM-like ATPase type IV pilus biogenesis protein 2031317..2032153 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951855 YP_002924950.1 CDS pilN_5 NC_012751.1 2032153 2032689 D fimbrial assembly protein 2032153..2032689 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951856 YP_002924951.1 CDS HDEF_2262 NC_012751.1 2032701 2033300 D hypothetical protein 2032701..2033300 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951857 YP_002924952.1 CDS HDEF_2263 NC_012751.1 2033293 2033700 D hypothetical protein 2033293..2033700 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951858 YP_002924953.1 CDS hofQ NC_012751.1 2033747 2035006 D outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa; outer membrane porin HofQ 2033747..2035006 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951859 YP_002924954.1 CDS HDEF_2265 NC_012751.1 2035079 2035186 R hypothetical protein complement(2035079..2035186) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951860 YP_002924955.1 CDS rtxA_29 NC_012751.1 2035198 2036430 R Possible N terminal truncation, paired with HDEF_2267 and HDEF_2268; RTX-family protein-29 complement(2035198..2036430) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951861 YP_002924956.1 CDS rtxA_28 NC_012751.1 2036459 2038756 R Possible C and N terminal truncations with HDEF_2266 and HDEF_2268; RTX-family protein-28 complement(2036459..2038756) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951862 YP_002924957.1 CDS rtxA_27 NC_012751.1 2038699 2041548 R Possible C terminal truncation, paired with HDEF_2266 and HDEF_2267; RTX-family protein-27 complement(2038699..2041548) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951863 YP_002924958.1 CDS osmY NC_012751.1 2042330 2042644 R COG2823; hyperosmotically inducible periplasmic protein, RpoS-dependent stationary phase gene protein complement(2042330..2042644) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951864 YP_002924959.1 CDS HDEF_2270 NC_012751.1 2042947 2043828 D COG0613; hypothetical protein 2042947..2043828 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951865 YP_002924960.1 CDS HDEF_2271 NC_012751.1 2043836 2044456 D COG0009; translation factor 2043836..2044456 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951866 YP_002924961.1 CDS yciL NC_012751.1 2044525 2045391 D COG1187; pseudouridine synthase (makes pseudouridine2605 in 23 S RNA) 2044525..2045391 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951867 YP_002924962.1 CDS prfC NC_012751.1 2045968 2047554 D COG4108; peptide chain release factor RF-3 2045968..2047554 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951868 YP_002924963.1 CDS hemE NC_012751.1 2047642 2048712 R COG0407; uroporphyrinogen decarboxylase complement(2047642..2048712) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951869 YP_002924964.1 CDS ompN NC_012751.1 2048876 2049982 R COG3203; outer membrane pore protein N, non-specific complement(2048876..2049982) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951870 YP_002924965.1 CDS HDEF_2277 NC_012751.1 2051120 2051290 R hypothetical protein complement(2051120..2051290) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951872 YP_002924966.1 CDS HDEF_2279 NC_012751.1 2051717 2051827 R hypothetical protein complement(2051717..2051827) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951874 YP_002924967.1 CDS HDEF_2281 NC_012751.1 2051869 2052216 R C terminal truncation, similar to APSE protein P43 disrupted by IS; COG3617; antirepressor complement(2051869..2052216) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951875 YP_002924968.1 CDS HDEF_2280 NC_012751.1 2052169 2052468 D COG2963; ISHde3, transposase 2052169..2052468 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951877 YP_002924969.1 CDS HDEF_2282 NC_012751.1 2052685 2053086 D COG2801; ISHde3, transposase 2052685..2053086 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951876 YP_002924970.1 CDS HDEF_2283 NC_012751.1 2053321 2053464 D hypothetical protein 2053321..2053464 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951878 YP_002924971.1 CDS HDEF_2284 NC_012751.1 2053390 2053533 R hypothetical protein complement(2053390..2053533) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951879 YP_002924972.1 CDS HDEF_2285 NC_012751.1 2053557 2053658 D hypothetical protein 2053557..2053658 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951880 YP_002924973.1 CDS yfcH NC_012751.1 2053812 2054717 D cell division inhibitor, NAD(P)-binding 2053812..2054717 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951881 YP_002924974.1 CDS HDEF_2287 NC_012751.1 2054764 2054946 R hypothetical protein complement(2054764..2054946) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951882 YP_002924975.1 CDS fldA NC_012751.1 2055052 2055588 D COG0716; flavodoxin 1 2055052..2055588 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951883 YP_002924976.1 CDS fur NC_012751.1 2055678 2056130 D COG0735; transcriptional repressor of iron transport (Fur family) 2055678..2056130 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951884 YP_002924977.1 CDS HDEF_2290 NC_012751.1 2056330 2057505 D hypothetical protein 2056330..2057505 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951885 YP_002924978.1 CDS acpS NC_012751.1 2057927 2058307 R COG0736; holo-ACP synthase complement(2057927..2058307) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951887 YP_002924979.1 CDS pdxJ NC_012751.1 2058307 2059035 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2058307..2059035) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951888 YP_002924980.1 CDS HDEF_2294 NC_012751.1 2059275 2059766 D hypothetical protein 2059275..2059766 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951889 YP_002924981.1 CDS rtxA_32 NC_012751.1 2059877 2061400 R Possible N terminal truncation, paired with HDEF_2296 and HDEF_2298; RTX-family protein-32 complement(2059877..2061400) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951890 YP_002924982.1 CDS rtxA_31 NC_012751.1 2061849 2063759 R Possible C and N terminal truncations with HDEF_2295 and HDEF_2298; RTX-family protein-31 complement(2061849..2063759) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951891 YP_002924983.1 CDS rtxA_30 NC_012751.1 2063926 2065191 R Possible C terminal truncation, paired with HDEF_2295 and HDEF_2296; RTX-family protein-30 complement(2063926..2065191) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951892 YP_002924984.1 CDS HDEF_2297 NC_012751.1 2065177 2065305 D hypothetical protein 2065177..2065305 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951894 YP_002924985.1 CDS ycbZ NC_012751.1 2065377 2067131 D COG1067; ATP-dependent protease 2065377..2067131 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951893 YP_002924986.1 CDS fabA NC_012751.1 2067202 2067717 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 2067202..2067717 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951895 YP_002924987.1 CDS rsmC NC_012751.1 2067747 2068757 D 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase 2067747..2068757 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951896 YP_002924988.1 CDS HDEF_2302 NC_012751.1 2068867 2069577 D hypothetical protein 2068867..2069577 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951897 YP_002924989.1 CDS rep NC_012751.1 2069693 2071723 D COG0210; Rep helicase, a single-stranded DNA-dependent ATPase 2069693..2071723 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951898 YP_002924990.1 CDS icdA NC_012751.1 2071793 2073046 D COG0538; isocitrate dehydrogenase, specific for NADP+ 2071793..2073046 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951899 YP_002924991.1 CDS HDEF_2305 NC_012751.1 2073146 2073247 R hypothetical protein complement(2073146..2073247) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951900 YP_002924992.1 CDS ftsX NC_012751.1 2073400 2074350 R ABC transporter membrane protein; cell division protein FtsX complement(2073400..2074350) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951901 YP_002924993.1 CDS ftsE NC_012751.1 2074322 2075008 R COG2884; cell division protein for septal ring assimbly and stability complement(2074322..2075008) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951902 YP_002924994.1 CDS ftsY NC_012751.1 2075005 2076132 R COG0552; cell division protein complement(2075005..2076132) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951903 YP_002924995.1 CDS HDEF_2309 NC_012751.1 2076222 2076869 D COG0742; 16S rRNA m(2)G966-methyltransferase 2076222..2076869 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951904 YP_002924996.1 CDS HDEF_2310 NC_012751.1 2076830 2077642 R COG0561; sugar phosphatase complement(2076830..2077642) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951905 YP_002924997.1 CDS HDEF_2312 NC_012751.1 2078363 2079808 D hypothetical protein 2078363..2079808 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951907 YP_002924998.1 CDS HDEF_2313 NC_012751.1 2080041 2080724 R transcriptional regulator complement(2080041..2080724) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951908 YP_002924999.1 CDS HDEF_2314 NC_012751.1 2080830 2081120 R hypothetical protein complement(2080830..2081120) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951909 YP_002925000.1 CDS HDEF_2315 NC_012751.1 2081625 2081717 R hypothetical protein complement(2081625..2081717) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951910 YP_002925001.1 CDS hepA NC_012751.1 2081962 2084895 D COG0553; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) 2081962..2084895 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951911 YP_002925002.1 CDS dfp NC_012751.1 2084941 2086146 D COG0452; bifunctional 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding 2084941..2086146 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951912 YP_002925003.1 CDS dut NC_012751.1 2086133 2086588 D COG0756; deoxyuridinetriphosphatase 2086133..2086588 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951913 YP_002925004.1 CDS HDEF_2319 NC_012751.1 2086682 2087611 D C terminal truncation; virulence factor 2086682..2087611 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951914 YP_002925005.1 CDS HDEF_2320 NC_012751.1 2087577 2089142 D N terminal truncation; virulence factor 2087577..2089142 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951915 YP_002925006.1 CDS HDEF_2321 NC_012751.1 2089688 2091370 D reverse transcriptase 2089688..2091370 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951970 YP_002925007.1 CDS HDEF_2322 NC_012751.1 2091380 2091883 D N terminal truncation; hypothetical protein 2091380..2091883 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951917 YP_002925008.1 CDS rplS NC_012751.1 2091958 2092305 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2091958..2092305) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951918 YP_002925009.1 CDS trmD NC_012751.1 2092372 2093172 R COG0336; tRNA (guanine-1-)-methyltransferase complement(2092372..2093172) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951919 YP_002925010.1 CDS rimM NC_012751.1 2093172 2093696 R COG0806; 16S rRNA processing protein complement(2093172..2093696) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951920 YP_002925011.1 CDS rpsP NC_012751.1 2093724 2093984 R COG0228; 30S ribosomal subunit protein S16 complement(2093724..2093984) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951921 YP_002925012.1 CDS ffh NC_012751.1 2094126 2095487 R COG0541; 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNA complement(2094126..2095487) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951922 YP_002925013.1 CDS HDEF_2328 NC_012751.1 2095666 2096448 D COG4137; cytochrome c assembly protein 2095666..2096448 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951923 YP_002925014.1 CDS corB NC_012751.1 2096492 2097754 D COG4536; hypothetical protein 2096492..2097754 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951924 YP_002925015.1 CDS HDEF_2330 NC_012751.1 2097793 2098092 D hypothetical protein 2097793..2098092 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951925 YP_002925016.1 CDS gshA NC_012751.1 2098142 2099710 R COG2918; gamma-glutamate-cysteine ligase complement(2098142..2099710) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951926 YP_002925017.1 CDS rpmA NC_012751.1 2099814 2100071 R COG0211; 50S ribosomal subunit protein L27 complement(2099814..2100071) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951927 YP_002925018.1 CDS rplU NC_012751.1 2100092 2100403 R COG0261; 50S ribosomal subunit protein L21 complement(2100092..2100403) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951928 YP_002925019.1 CDS atpC NC_012751.1 2100683 2101102 R COG0355; membrane-bound ATP synthase, F1 sector, epsilon-subunit complement(2100683..2101102) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951929 YP_002925020.1 CDS atpA NC_012751.1 2101127 2102509 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(2101127..2102509) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951930 YP_002925021.1 CDS atpG NC_012751.1 2102537 2103406 R COG0224; membrane-bound ATP synthase, F1 sector, gamma-subunit complement(2102537..2103406) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951931 YP_002925022.1 CDS atpD NC_012751.1 2103447 2104988 R COG0056; membrane-bound ATP synthase, F1 sector, beta-subunit complement(2103447..2104988) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951932 YP_002925023.1 CDS atpH NC_012751.1 2105056 2105586 R COG0712; membrane-bound ATP synthase, F1 sector, delta-subunit complement(2105056..2105586) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951933 YP_002925024.1 CDS atpF NC_012751.1 2105601 2106071 R COG0711; membrane-bound ATP synthase, F0 sector, subunit b complement(2105601..2106071) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951934 YP_002925025.1 CDS atpE NC_012751.1 2106135 2106374 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(2106135..2106374) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951935 YP_002925026.1 CDS atpB NC_012751.1 2106461 2107285 R COG0356; membrane-bound ATP synthase, F0 sector, subunit a, important for FO assembly complement(2106461..2107285) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951936 YP_002925027.1 CDS gidB NC_012751.1 2107453 2108088 R COG0357; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein complement(2107453..2108088) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951937 YP_002925028.1 CDS gidA NC_012751.1 2108111 2109994 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(2108111..2109994) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951938 YP_002925029.1 CDS repA NC_012752.1 1 840 D plasmid replication initiator protein 1..840 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952027 YP_002925030.1 CDS HDEF_p0004 NC_012752.1 2311 2982 D putative transcriptional regulator, PAS domain protein 2311..2982 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951973 YP_002925031.1 CDS mutL NC_012752.1 3239 5011 R COG0323; enzyme in methyl-directed mismatch repair complement(3239..5011) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951974 YP_002925032.1 CDS HDEF_p0006 NC_012752.1 5253 6356 R COG2850; hypothetical protein complement(5253..6356) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951975 YP_002925033.1 CDS HDEF_p0007 NC_012752.1 6732 7292 D COG1961; putative resolvase HDEF_p0007 6732..7292 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951976 YP_002925034.1 CDS HDEF_p0008 NC_012752.1 7890 8285 D COG1487; putative addiction module, PIN domain protein 7890..8285 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951977 YP_002925035.1 CDS HDEF_p0010 NC_012752.1 10605 11243 D COG1192; hypothetical protein 10605..11243 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951979 YP_002925036.1 CDS HDEF_p0011 NC_012752.1 11240 11476 D hypothetical protein 11240..11476 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951980 YP_002925037.1 CDS mobB NC_012752.1 12646 12954 D MobB relaxase/mobilization protein 12646..12954 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951981 YP_002925038.1 CDS mobA NC_012752.1 12958 14850 D MobA relaxase/mobilization protein 12958..14850 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951982 YP_002925039.1 CDS hu NC_012752.1 14981 15322 D COG0776; DNA-binding protein 14981..15322 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951983 YP_002925040.1 CDS HDEF_p0015 NC_012752.1 15584 16510 R COG5464; putative transposase complement(15584..16510) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951984 YP_002925041.1 CDS trbC NC_012752.1 17231 21714 R interrupted by GII intron; TrbC conjugal transfer protein complement(join(17231..18131,20477..21714)) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951985 YP_002925043.1 CDS trbB NC_012752.1 21707 22639 R TrbB conjugal transfer protein complement(21707..22639) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951986 YP_002925044.1 CDS trbA NC_012752.1 22715 23824 R TrbA conjugal transfer protein complement(22715..23824) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951987 YP_002925045.1 CDS HDEF_p0020 NC_012752.1 23920 24207 D hypothetical protein 23920..24207 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951988 YP_002925046.1 CDS HDEF_p0021 NC_012752.1 24283 24558 D hypothetical protein 24283..24558 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951989 YP_002925047.1 CDS HDEF_p0022 NC_012752.1 24581 25231 R hypothetical protein complement(24581..25231) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951990 YP_002925048.1 CDS traY NC_012752.1 25287 27434 R TraY conjugal transfer protein complement(25287..27434) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951991 YP_002925049.1 CDS traX NC_012752.1 27536 28084 R TraX conjugal transfer protein complement(27536..28084) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951992 YP_002925050.1 CDS traW NC_012752.1 28077 29270 R TraW conjugal transfer protein complement(28077..29270) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951993 YP_002925051.1 CDS traU NC_012752.1 29286 32375 R TraU conjugal transfer protein complement(29286..32375) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951994 YP_002925052.1 CDS HDEF_p0026 NC_012752.1 32341 32688 D COG3549; addiction module, toxin 32341..32688 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951996 YP_002925053.1 CDS HDEF_p0028 NC_012752.1 32703 32990 D COG3093; addiction module, antitoxin 32703..32990 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951995 YP_002925054.1 CDS traT NC_012752.1 33028 33630 R TraT conjugal transfer protein complement(33028..33630) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951997 YP_002925055.1 CDS traR NC_012752.1 33660 34055 R TraR conjugal transfer protein complement(33660..34055) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951998 YP_002925056.1 CDS traQ NC_012752.1 34103 34642 R TraQ conjugal transfer protein complement(34103..34642) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951999 YP_002925057.1 CDS traP NC_012752.1 34656 35558 R TraP conjugal transfer protein complement(34656..35558) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952000 YP_002925058.1 CDS traO NC_012752.1 35434 36606 R TraO conjugal transfer protein complement(35434..36606) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952001 YP_002925059.1 CDS traN NC_012752.1 36610 37614 R TraN conjugal transfer protein complement(36610..37614) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952002 YP_002925060.1 CDS traM NC_012752.1 37611 38282 R TraM conjugal transfer protein complement(37611..38282) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952003 YP_002925061.1 CDS traL NC_012752.1 38307 38696 R TraL conjugal transfer protein complement(38307..38696) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952004 YP_002925062.1 CDS traC NC_012752.1 38749 41538 R COG4643; DNA primase TraC complement(38749..41538) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952005 YP_002925063.1 CDS traK NC_012752.1 41553 41813 R TraK conjugal transfer protein complement(41553..41813) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952006 YP_002925064.1 CDS traJ NC_012752.1 41875 43041 R COG2805; TraJ conjugal transfer protein complement(41875..43041) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952007 YP_002925065.1 CDS traI NC_012752.1 43028 43834 R TraI conjugal transfer protein complement(43028..43834) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952008 YP_002925066.1 CDS traH NC_012752.1 43831 44274 R TraH conjugal transfer protein complement(43831..44274) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952010 YP_002925067.1 CDS pilT NC_012752.1 44342 44806 R COG0741; PilT lytic transglycosylase, SLT domain protein complement(44342..44806) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952009 YP_002925068.1 CDS HDEF_p0043 NC_012752.1 44849 45475 R hypothetical protein complement(44849..45475) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952011 YP_002925069.1 CDS pilM NC_012752.1 45472 45903 R PilM type IV pilus biogenesis protein complement(45472..45903) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952012 YP_002925070.1 CDS pilV NC_012752.1 45953 47317 R PilV type IV pilus minor pilin subunit, shufflon protein complement(45953..47317) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952013 YP_002925071.1 CDS pilS2 NC_012752.1 47458 47967 R PilS2 type IV pilus biosynthesis protein complement(47458..47967) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952014 YP_002925072.1 CDS pilR NC_012752.1 47978 49042 R PilR type IV pilus biosynthesis protein complement(47978..49042) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952015 YP_002925073.1 CDS pilQ NC_012752.1 49029 50576 R COG2804; PilQ type IV pilus biogenesis protein ATPase complement(49029..50576) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952016 YP_002925074.1 CDS pilP NC_012752.1 50573 50983 R putative type IV pilus protein complement(50573..50983) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952017 YP_002925075.1 CDS pilO NC_012752.1 50970 52313 R PilO type IV pilus biogenesis outer membrane protein complement(50970..52313) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952018 YP_002925076.1 CDS HDEF_p0051 NC_012752.1 52349 52627 D COG2929; hypothetical protein 52349..52627 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952019 YP_002925077.1 CDS HDEF_p0052 NC_012752.1 52602 52889 D COG3514; hypothetical protein 52602..52889 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952020 YP_002925078.1 CDS pilN NC_012752.1 52899 54581 R PilN type IV pilus biogenesis outer membrane protein complement(52899..54581) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952021 YP_002925079.1 CDS pilL NC_012752.1 54578 55234 R type IV pilus biogenesis outer membrane protein precursor complement(54578..55234) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952022 YP_002925080.1 CDS rfaH NC_012752.1 55539 55988 R transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin complement(55539..55988) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952023 YP_002925081.1 CDS HDEF_p0056 NC_012752.1 56471 56854 R hypothetical protein complement(56471..56854) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952024 YP_002925082.1 CDS HDEF_p0057 NC_012752.1 56888 57565 R hypothetical protein complement(56888..57565) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952025 YP_002925083.1 CDS HDEF_p0058 NC_012752.1 57778 58308 R plasmid replication initiator protein-like protein complement(57778..58308) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7952026 HDEF_0014 tRNA HDEF_0014 NC_012751.1 13000 13092 D tRNA-Ser 13000..13092 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949619 HDEF_0015 tRNA HDEF_0015 NC_012751.1 13102 13178 D tRNA-Arg 13102..13178 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949620 HDEF_0335 tRNA HDEF_0335 NC_012751.1 346653 346729 R tRNA-Met complement(346653..346729) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949938 HDEF_0336 tRNA HDEF_0336 NC_012751.1 346798 346884 R tRNA-Leu complement(346798..346884) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949939 HDEF_0360 tRNA HDEF_0360 NC_012751.1 368129 368204 R tRNA-Asn complement(368129..368204) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7949963 HDEF_0548 tRNA HDEF_0548 NC_012751.1 545881 545957 D tRNA-Arg 545881..545957 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950151 HDEF_0549 tRNA HDEF_0549 NC_012751.1 545966 546041 D tRNA-His 545966..546041 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950152 HDEF_0550 tRNA HDEF_0550 NC_012751.1 546074 546159 D tRNA-Leu 546074..546159 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950153 HDEF_0551 tRNA HDEF_0551 NC_012751.1 546180 546256 D tRNA-Pro 546180..546256 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950154 HDEF_0571 tRNA HDEF_0571 NC_012751.1 562914 562989 D tRNA-Val 562914..562989 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950174 HDEF_0572 tRNA HDEF_0572 NC_012751.1 563005 563080 D tRNA-Lys 563005..563080 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950175 HDEF_0684 tRNA HDEF_0684 NC_012751.1 679727 679803 D tRNA-Asp 679727..679803 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950287 HDEF_0685 tRNA HDEF_0685 NC_012751.1 680072 680147 R tRNA-Thr complement(680072..680147) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950288 HDEF_0686 tRNA HDEF_0686 NC_012751.1 680168 680242 R tRNA-Gly complement(680168..680242) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950289 HDEF_0687 tRNA HDEF_0687 NC_012751.1 680290 680374 R tRNA-Tyr complement(680290..680374) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950290 HDEF_0688 tRNA HDEF_0688 NC_012751.1 680436 680511 R tRNA-Thr complement(680436..680511) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950291 HDEF_0797 tRNA HDEF_0797 NC_012751.1 793737 793819 D tRNA-Lys 793737..793819 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950398 HDEF_0812 tRNA HDEF_0812 NC_012751.1 812386 812460 R tRNA-Gln complement(812386..812460) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950413 HDEF_0813 tRNA HDEF_0813 NC_012751.1 812534 812608 R tRNA-Gln complement(812534..812608) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950414 HDEF_0814 tRNA HDEF_0814 NC_012751.1 812637 812721 R tRNA-Leu complement(812637..812721) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950415 HDEF_0815 tRNA HDEF_0815 NC_012751.1 812724 812800 R tRNA-Met complement(812724..812800) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950416 HDEF_0871 tRNA HDEF_0871 NC_012751.1 890272 890347 R tRNA-Phe complement(890272..890347) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950471 HDEF_1304 tRNA HDEF_1304 NC_012751.1 1215464 1215539 D tRNA-Ala 1215464..1215539 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950904 HDEF_1315 tRNA HDEF_1315 NC_012751.1 1227653 1227728 R tRNA-Trp complement(1227653..1227728) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950915 HDEF_1318 tRNA HDEF_1318 NC_012751.1 1230962 1231037 R tRNA-Ala complement(1230962..1231037) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950918 HDEF_1319 tRNA HDEF_1319 NC_012751.1 1231094 1231170 R tRNA-Ile complement(1231094..1231170) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950919 HDEF_1515 tRNA HDEF_1515 NC_012751.1 1389606 1389682 D tRNA-Val 1389606..1389682 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951115 HDEF_1527 tRNA HDEF_1527 NC_012751.1 1404586 1404658 D tRNA-Lys 1404586..1404658 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951127 HDEF_1531 tRNA HDEF_1531 NC_012751.1 1408189 1408264 D tRNA-Gly 1408189..1408264 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951131 HDEF_1532 tRNA HDEF_1532 NC_012751.1 1408303 1408376 D tRNA-Cys 1408303..1408376 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951132 HDEF_1533 tRNA HDEF_1533 NC_012751.1 1408386 1408471 D tRNA-Leu 1408386..1408471 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951133 HDEF_1594 tRNA HDEF_1594 NC_012751.1 1443578 1443662 R tRNA-Leu complement(1443578..1443662) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951194 HDEF_1646 tRNA HDEF_1646 NC_012751.1 1498771 1498847 D tRNA-Arg 1498771..1498847 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951246 HDEF_1658 tRNA HDEF_1658 NC_012751.1 1509291 1509365 D tRNA-Lys 1509291..1509365 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951257 HDEF_1749 tRNA HDEF_1749 NC_012751.1 1591993 1592068 R tRNA-Trp complement(1591993..1592068) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951346 HDEF_1752 tRNA HDEF_1752 NC_012751.1 1595332 1595407 R tRNA-Glu complement(1595332..1595407) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951349 HDEF_1919 tRNA HDEF_1919 NC_012751.1 1755050 1755124 D tRNA-Arg 1755050..1755124 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951515 HDEF_2030 tRNA HDEF_2030 NC_012751.1 1856411 1856486 R tRNA-Trp complement(1856411..1856486) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951626 HDEF_2033 tRNA HDEF_2033 NC_012751.1 1859750 1859825 R tRNA-Glu complement(1859750..1859825) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951629 HDEF_2069 tRNA HDEF_2069 NC_012751.1 1895090 1895177 R tRNA-Ser complement(1895090..1895177) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951665 HDEF_2112 tRNA HDEF_2112 NC_012751.1 1934512 1934588 D tRNA-Pro 1934512..1934588 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951708 HDEF_2246 tRNA HDEF_2246 NC_012751.1 2021408 2021484 D tRNA-Met 2021408..2021484 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951841 HDEF_2291 tRNA HDEF_2291 NC_012751.1 2057704 2057793 R tRNA-Ser complement(2057704..2057793) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951886 HDEF_1316 rRNA HDEF_1316 NC_012751.1 1227800 1227919 R 5S ribosomal RNA complement(1227800..1227919) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950916 HDEF_1317 rRNA HDEF_1317 NC_012751.1 1227977 1230878 R 23S ribosomal RNA complement(1227977..1230878) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950917 HDEF_1320 rRNA HDEF_1320 NC_012751.1 1231256 1232804 R 16S ribosomal RNA complement(1231256..1232804) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7950920 HDEF_1750 rRNA HDEF_1750 NC_012751.1 1592140 1592259 R 5S ribosomal RNA complement(1592140..1592259) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951347 HDEF_1751 rRNA HDEF_1751 NC_012751.1 1592317 1595218 R 23S ribosomal RNA complement(1592317..1595218) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951348 HDEF_1753 rRNA HDEF_1753 NC_012751.1 1595470 1597018 R 16S ribosomal RNA complement(1595470..1597018) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951350 HDEF_2031 rRNA HDEF_2031 NC_012751.1 1856558 1856677 R 5S ribosomal RNA complement(1856558..1856677) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951627 HDEF_2032 rRNA HDEF_2032 NC_012751.1 1856735 1859636 R 23S ribosomal RNA complement(1856735..1859636) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951628 HDEF_2034 rRNA HDEF_2034 NC_012751.1 1859888 1861436 R 16S ribosomal RNA complement(1859888..1861436) Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) 7951630