-- dump date 20120504_140829 -- class Genbank::Gene -- table gene_note -- id note 7949610 diaminopimelate decarboxylase, PLP-binding; similar to COG0019; similar to GI 123443530; EcoGene EG10549 7949619 tRNA-Ser1 7949620 tRNA-Arg1 7949623 thioredoxin reductase, FAD/NAD(P)-binding; similar to COG0492; similar to GI 123441835; EcoGene EG11032 7949633 proline aminopeptidase P II; similar to COG0006; similar to GI 186896617; EcoGene EG10697 7949709 thiol peroxidase, thioredoxin-dependent; similar to COG1225; similar to GI 77974619; EcoGene EG10108 7949714 addiction module antitoxin, pseudogene; similar to COG2161; similar to GI 51593950 7949787 glycosyltransferase group 2, pseudogene; similar to COG0463; similar to GI 77978965 7949788 glycosyltransferase group 2, pseudogene; similar to COG0463; similar to GI 170025397 7949789 mannose-1-phosphate guanyltransferase, colanic acid synthesis; similar to COG0836; similar to GI 90410683; EcoGene EG10161 7949791 GHMP kinase, pseudogene; similar to COG2605; similar to GI 118045510 7949804 ornithine cyclodeaminase, pseudogene; similar to GI 150008100 7949853 phage tail fiber assembly protein, pseudogene; similar to GI 85058688 7949856 phage tail fiber assembly protein, pseudogene; similar to GI 85058689 7949868 reverse transcriptase, pseudogene; similar to GI 196187417 7949889 conserved hypothetical protein, pseudogene; similar to GI 183600653 7949894 glutamate:aspartate symporter (DAACS family); similar to COG1301; similar to GI 123440699; EcoGene EG10405 7949917 type II/IV secretion system protein, pseudogene; similar to COG4962; similar to GI 52425832 7949938 tRNA-Met1 7949939 tRNA-Leu1 7949953 protein exporter, transport across outer membrane (General Secretory Pathway); similar to COG1459; similar to GI 59713079; EcoGene EG12885 7949963 tRNA-Asn1 7949968 predicted P-loop ATPase, pseudogene; similar to COG1444; similar to GI 77974612 7949983 IS4-like transposase, pseudogene; similar to COG3039; similar to GI 120553541 7950002 conserved hypothetical, pseudogene; similar to COG3755; similar to GI 67458527 7950009 phage endopeptidase, pseudogene; similar to GI 123442105 7950139 conserved hypothetical protein, pseudogene; similar to COG2968; similar to GI 157372160 7950151 tRNA-Arg2 7950152 tRNA-His1 7950153 tRNA-Leu2 7950154 tRNA-Pro1 7950155 conserved hypothetical protein, pseudogene; similar to COG1496; similar to GI 157369130 7950161 enzyme for maturation of Microcin B17 and degradation of CcdA; similar to COG0312; similar to GI 123443970; EcoGene EG10741 7950169 conserved hypothetical protein, pseudogene; similar to GI 77961763 7950174 tRNA-Val1 7950175 tRNA-Lys1 7950179 phage endonuclease, pseudogene; similar to GI 169633396 7950182 phage regulatory protein, pseudogene; similar to GI 33438929 7950201 IS4-like transposase, pseudogene; similar to GI 121582986 7950259 iron-sulfur binding protein, pseudogene; similar to CCOG0633; similar to GI 123441880 7950268 conserved phage protein, pseudogene; similar to GI 62181180 7950269 phage lytic transglycosylase pseudogene; similar to GI 85059635 7950287 tRNA-Asp1 7950288 tRNA-Thr1 7950289 tRNA-Gly1 7950290 tRNA-Tyr1 7950291 tRNA-Thr2 7950333 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7951947 reverse transcriptase; similar to GI 196187417 7950352 conserved hypothetical protein, pseudogene; similar to COG1426; similar to GI 170023538 7950360 transposase associated integrase, pseuodgene; similar to COG2801; similar to GI 119945352 7950372 transcriptional repressor for genes of nucleoside catabolism and recycling (GalR/LacI family); similar to COG1609; similar to GI 77961036; EcoGene EG10200 7950393 cysE_gpsA 7950413 tRNA-Gln1 7950414 tRNA-Gln2 7950415 tRNA-Leu3 7950416 tRNA-Met2 7950426 filamentation induced by cAMP protein, pseudogene; similar to COG3177; similar to GI 157368810 7950445 inner membrane protein, pseudogene; similar to GI 168231263 7950471 tRNA-Phe1 7950491 phage lysozyme, pseudogene; similar to COG3772; similar to GI 9633560 7950493 conserved hypothetical protein, pseudogene; similar to GI 193064796 7950494 Mu-like prophage tail sheath protein gpL, pseudogene; partial, N terminal truncation; similar to COG4386; similar to GI 77975421 7950499 Mu-like phage P protein, pseudogene; similar to COG4379; similar to GI 77958421 7950500 Mu-like prophage protein gp45, pseudogene; similar to COG4384; similar to GI 77958422 7950502 phage tail protein, pseudogene; similar to COG3778; similar to GI 157161450 7950511 RNA-directed DNA polymerase; 3' truncation; similar to COG3344; similar to GI 187736758 7950515 conserved hypothetical protein, pseudogene; similar to GI 85059374 7950523 phage replication protein O, pseudogene; similar to GI 110641331 7950529 transposase, pseudogene; similar to GI 189502264 7950533 transposase, pseudogene; similar to COG5464; similar to GI 70724755 7950534 RNA-directed DNA polymerase, pseudogene; disrupted by IS element; similar to COG3344; similar to GI 163855365 7950537 RNA-directed DNA polymerase, pseudogene; disrupted by IS element; similar to COG3344; similar to GI 163855362 7950542 type IV pilus biogenesis outer membrane protein precursor, pseudogene; similar to GI 38201737 7950543 PilN type IV pilus biogenesis outer membrane protein, pseudogene; similar to GI 153930563 7950564 DNA primase TraC, pseudogene; similar to GI 38201722 7950573 TraY conjugal transfer protein; similar to GI 162958039 7950596 endodeoxyribonuclease, pseudogene; similar to COG4570; similar to GI 145642420 7950599 endodeoxyribonuclease, pseudogene; similar to COG4570; similar to GI 24371573 7950602 phage protein, pseudogene 7950604 phage lysozyme, pseudogene; similar to COG3772; similar to GI 85059191 7950618 transposase, pseudogene; similar to GI 77163617 7950625 PilN type IV pilus biogenesis outer membrane protein, pseudogene; similar to GI 153930563 7950628 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 77980022 7951954 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7950634 partition protein, pseudogene; similar to COG1192; similar to GI 85058597 7950635 transposase, pseudogene; similar to COG1484; similar to GI 157368606 7950640 addiction module,HicA-related protein, pseudogene; similar to GI 153007965 7950641 transcriptional regulator, GerE domain; similar to GI 85060418 7950643 regulatory protein, pseudogene; similar to GI 70732352 7950646 IS26-like transposase, pseudogene; similar to COG3316; similar to GI 45332240 7950650 conserved hypothetical protein, pseudogene; similar to GI 134044587 7950651 conserved hypothetical protein, pseudogene; similar to GI 169544255 7950657 conserved hypothetical protein, pseudogene; similar to GI 169544255 7950660 conserved hypothetical protein, pseudogene; similar to GI 188535910 7950662 addiction module antitoxin, pseudogene 7950663 plasmid replication protein, pseudogene; similar to GI 190570454 7950667 conserved hypothetical, pseudogene; similar to GI 126661481 7950671 conserved hypothetical, pseudogene; similar to GI 157372272 7950675 conserved hypothetical, pseudogene 7950678 plasmid replication initiator protein, pseudogene; similar to GI 5921539 7950681 plasmid replication initiator protein, pseudogene 7950682 mobilization protein, pseudogene; similar to GI 188535908 7950687 entry exclusion protein, pseudogene; similar to GI 168998552 7950690 conserved hypothetical, pseudogene 7950703 DNA-cytosine methyltransferase, pseudogene; similar to COG0270; similar to GI 187923141 7950709 phage terminase, large subunit, pseudogene; C terminal truncation; similar to GI 156933214 7950718 transposase associated integrase, pseuodgene; similar to COG2801; similar to GI 663078 7950728 transposase, pseudogene; similar to COG3293; similar to GI 57506413 7950731 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 193066274 7950734 conserved phage protein, pseudogene; similar to GI 85060418 7950735 phage repressor protein, pseudogene; similar to GI 146312748 7950747 conserved hypothetical protein, pseudogene; similar to GI 10955420 7950749 adenylate cyclase, pseudogene; similar to COG2931; similar to GI 15485204 7950763 transposase, pseudogene; similar to COG5464; similar to GI 70724755 7950764 conserved hypothetical protein, pseudogene; similar to GI 165938007 7950766 DNA cytosine methylase; similar to COG0270; similar to GI 187923141; EcoGene EG10211 7950773 transposase, pseudogene; similar to COG3316; similar to GI 77978013 7950779 conserved hypothetical protein, pseudogene; similar to GI 123442228 7950783 IS4-like transposase, pseudogene; similar to GI 30249492 7950825 conserved hypothetical protein, pseudogene; similar to GI 37528122 7950837 phage tail protein, pseudogene; similar to GI 9634179 7950844 permease, pseudogene; similar to COG0477; similar to GI 77973823 7950848 fructose-bisphosphatase; similar to COG0158; similar to GI 50122847; EcoGene EG10283 7950849 IS4-like transposase, pseudogene; similar to COG3293; similar to GI 189502478 7950863 RTX-family protein-17, pseudogene; similar to GI 77959415 7950876 conserved hypothetical protein, pseudogene; similar to COG1636; similar to GI 157370923 7951958 reverse transcriptase, pseudogene; similar to GI 169834904 7950904 tRNA-Ala1 7950915 tRNA-Trp1 7950916 5S ribosomal RNA 1 7950917 23S ribosomal RNA 1 7950918 tRNA-Ala2 7950919 tRNA-Ile1 7950920 16S ribosomal RNA 1 7950921 reverse transcriptase, pseudogene; similar to GI 196187417 7950930 TriA conjugal transfer protein, pseudogene; similar to GI 12053566 7950932 TriC conjugal transfer protein, pseudogene; similar to GI 37518415 7950959 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006 7950963 conserved phage protein, pseudogene; similar to GI 27311217 7950966 phage integrase, pseudogene; similar to COG0582; similar to GI 193065925 7950968 small heat shock protein, pseudogene; similar to COG0071; similar to GI 70724779 7950976 TraM conjugal transfer protein, pseudogene; similar to GI 194440081 7950979 conserved hypothetical protein, pseudogene; similar to COG4683; similar to GI 118602052 7950985 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 146311297 7950988 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 168244303 7950992 transposase, pseudogene; similar to COG3316; similar to GI 60115541 7951010 transposase, pseudogene; similar to COG5464; similar to GI 8896023 7951961 reverse transcriptase; similar to GI 196187417 7951016 TraC conjugal transfer protein, pseudogene 7951026 PilR type IV pilus biosynthesis protein, pseudogene; similar to GI 153930581 7951030 conserved hypothetical protein, pseudogene; similar to COG4679; similar to GI 121605889 7951032 PilN type IV pilus biogenesis outer membrane protein, pseudogene; similar to GI 153930563 7951065 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 157370253 7951066 transcriptional regulatory protein, pseudogene; similar to GI 123442228 7951115 tRNA-Val2 7951127 tRNA-Lys2 7951131 tRNA-Gly2 7951132 tRNA-Cys1 7951133 tRNA-Leu4 7951147 glycosyltransferase, pseudogene; similar to COG0463; similar to GI 168465727 7951154 RNA-directed DNA polymerase, pseudogene; similar to GI 187736766 7951157 IS200-like transposase, pseudogene; similar to COG1943; similar to GI 170683194 7951159 conserved hypothetical protein, pseudogene; similar to GI 13236178 7951183 phage integrase, pseudogene; similar to GI 9634144 7951193 phage integrase, pseudogene; similar to COG0582; similar to GI 197250356 7951194 tRNA-Leu5 7951246 tRNA-Arg3 7951257 tRNA-Lys3 7951292 ISHde5, transposase; similar to GI 77165353 7951302 Mu-like phage protein gp29, pseudogene; similar to GI 167945281 7951305 conserved hypothetical phage protein, pseudogene; similar to GI 163868398 7951306 ISHde3, transposase, pseudogene 7951316 DNA protecting protein; similar to COG0758; similar to GI 123444063 7951333 sec-independent translocase, pseudogene; similar to COG1826; similar to GI 50119160 7951338 gap repair protein with nucleoside triP hydrolase domain, part of RecFOR complex that targets RecA to ssDNA-dsDNA junction; similar to COG1195; similar to GI 77976618; EcoGene EG10828 7951346 tRNA-Trp2 7951347 5S ribosomal RNA 2 7951348 23S ribosomal RNA 2 7951349 tRNA-Glu1 7951350 16S ribosomal RNA 2 7951464 citrate-dependent iron (III) transport protein (ABC superfamily, atp_bind); similar to COG1120; similar to GI 150376561; EcoGene EG10290 7951466 citrate-dependent iron (III) transport protein (ABC superfamily, membrane); similar to COG0614; similar to GI 190892075 7951471 siderophore biosynthesis protein, pseudogene; similar to COG4264; similar to GI 50123036 7951475 IS1327-like transposase, pseudogene; similar to COG3316; similar to GI 1805764 7951489 catalytic subunit of RNAse P 7951501 DNA mismatch repair protein; C terminus of HDEF_1904; similar to COG3066; similar to GI 77963209; EcoGene EG10624 7951515 tRNA-Arg4 7951545 ABC transporter ATP-binding protein, pseudogene; partial duplication of HDEF_1950; similar to COG1127 7951555 integral membrane protein, pseudogene; similar to GI 194444633 7951569 conserved hypothetical protein, pseudogene; similar to GI 161502236 7951578 conserved antirepressor, pseudogene; similar to APSE protein P43; similar to GI 9633590 7951584 conserved hypothetical protein, pseudogene 7951585 conserved hypothetical protein, pseudogene 7951591 cytochrome o ubiquinol oxidase subunit II, pseudogene; similar to GI 37527735; EcoGene EG10178 7951599 IS4-like transposase, pseudogene; similar to COG3293; similar to GI 30249523 7951600 conserved hypothetical protein, pseudogene; similar to GI 83647255 7951615 phage integrase, pseudogene; similar to GI 168707341 7951625 phosphomannomutase, pseudogene; similar to COG1109; similar to GI 170025395 7951626 tRNA-Trp3 7951627 5S ribosomal RNA 3 7951628 23S ribosomal RNA 3 7951629 tRNA-Glu2 7951630 16S ribosomal RNA 3 7951641 conserved hypothetical protein, pseudogene; similar to GI 156932811 7951643 ISHde4, transposase, pseudogene; similar to GI 152998500 7951644 phage integrase, pseudogene; similar to COG0582; similar to GI 85058907 7951647 phage integrase, pseuodgene; similar to COG0582; similar to GI 170020889 7951655 conserved antirepressor, pseudogene; similar to APSE protein P43; similar to GI 9633590 7951665 tRNA-Ser2 7951701 glutamine amidotransferase, pseudogene; similar to COG0121; similar to GI 77962896 7951708 tRNA-Pro2 7951714 glutamyl tRNA reductase, pseudogene; similar to COG0373; similar to GI 157370231; EcoGene EG10427 7951738 transposon associated integrase, pseuodgene; similar to COG2801; similar to GI 119945352 7951744 resolvase, pseudogene; similar to COG1961; similar to GI 21233676 7951751 conserved hypothetical protein, pseudogene; similar to GI 169544255 7951753 DNA primase, pseudogene; similar to GI 118601998 7951762 conserved hypothetical protein, pseudogene; similar to pHD5AT gene HDEF_p0006; similar to COG2850; similar to GI 146311297 7951764 resolvase, pseudogene; similar to COG1961; similar to GI 161502031 7951773 MobC relaxase/mobilization protein; similar to GI 162958030 7951775 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7951778 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7951779 conserved hypothetical protein, pseudogene; similar to COG2929; similar to GI 148264319 7951781 phage tail protein, pseudogene; similar to GI 37526897 7951785 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7951786 conserved hypothetical protein, pseudogene; similar to COG2929; similar to GI 148264319 7951788 phage tail assembly protein, pseudogene; similar to GI 37526897 7951792 MobA relaxase/mobilization protein, pseudogene; similar to GI 162958032 7951793 conserved hypothetical protein, pseudogene; similar to COG2929; similar to GI 148264319 7951795 phage tail assembly protein, pseudogene; similar to GI 37526897 7951820 IS1480-like transposase, pseudogene; similar to COG3293; similar to GI 21231497 7951822 transposase, pseudogene; similar to GI 117926066 7951823 IS4-like transposase, pseudogene; similar to COG3293; similar to GI 30249492 7951828 transposase, pseudogene; similar to COG3293; similar to GI 54298886 7951841 tRNA-Met3 7951871 transposase, pseudogene; similar to COG3293; similar to GI 22297784 7951873 phage integrase, pseudogene; similar to COG0582; similar to GI 188496064 7951886 tRNA-Ser3 7951906 Tn3-like transposase, pseudogene; similar to GI 136134 7951978 putative resolvase HDEF_p0009; similar to GI 126090252