; retrieve-seq -v -org Candidatus_Sulcia_muelleri_SMDSEM_uid59393 -all -type downstream -feattype CDS -from 0 -to -2 -format wc -nocomment -label id,ctg,reg_left,reg_right,orf_strand -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Candidatus_Sulcia_muelleri_SMDSEM_uid59393/genome/Candidatus_Sulcia_muelleri_SMDSEM_uid59393_stop_codons.wc
; organism      	Candidatus_Sulcia_muelleri_SMDSEM_uid59393
; sequence type 	downstream
; feature type  	cds
; Output format 	wc
; Line width    	60
; relative coordinates
;        from    -2
;        to      0
;        size    3
; Queries       	242
;
YP_003108407.1|NC_013123.1|637|639|D	\TAA\
YP_003108408.1|NC_013123.1|712|714|R	\TAA\
YP_003108409.1|NC_013123.1|3612|3614|D	\TGA\
YP_003108410.1|NC_013123.1|6182|6184|D	\TAA\
YP_003108411.1|NC_013123.1|7327|7329|D	\TGA\
YP_003108412.1|NC_013123.1|9351|9353|D	\TAA\
YP_003108413.1|NC_013123.1|10435|10437|D	\TAA\
YP_003108414.1|NC_013123.1|11994|11996|D	\TAA\
YP_003108415.1|NC_013123.1|14655|14657|D	\TAA\
YP_003108416.1|NC_013123.1|15315|15317|D	\TAG\
YP_003108417.1|NC_013123.1|16611|16613|D	\TAA\
YP_003108418.1|NC_013123.1|16610|16612|R	\TAA\
YP_003108419.1|NC_013123.1|19073|19075|D	\TAA\
YP_003108420.1|NC_013123.1|19698|19700|D	\TAG\
YP_003108421.1|NC_013123.1|19771|19773|R	\TAA\
YP_003108422.1|NC_013123.1|20082|20084|R	\TGA\
YP_003108423.1|NC_013123.1|22540|22542|D	\TAA\
YP_003108424.1|NC_013123.1|26389|26391|D	\TAA\
YP_003108425.1|NC_013123.1|26712|26714|D	\TGA\
YP_003108426.1|NC_013123.1|26843|26845|R	\TAA\
YP_003108427.1|NC_013123.1|28594|28596|R	\TGA\
YP_003108428.1|NC_013123.1|30945|30947|D	\TAA\
YP_003108429.1|NC_013123.1|31169|31171|D	\TAA\
YP_003108430.1|NC_013123.1|31183|31185|R	\TAA\
YP_003108431.1|NC_013123.1|32820|32822|R	\TAA\
YP_003108432.1|NC_013123.1|34715|34717|R	\TAA\
YP_003108433.1|NC_013123.1|35812|35814|D	\TAA\
YP_003108434.1|NC_013123.1|36840|36842|D	\TAA\
YP_003108435.1|NC_013123.1|37452|37454|D	\TAA\
YP_003108436.1|NC_013123.1|39114|39116|D	\TGA\
YP_003108437.1|NC_013123.1|40085|40087|D	\TAA\
YP_003108438.1|NC_013123.1|40049|40051|R	\TAA\
YP_003108439.1|NC_013123.1|41540|41542|R	\TAA\
YP_003108440.1|NC_013123.1|42375|42377|R	\TAA\
YP_003108441.1|NC_013123.1|43971|43973|R	\TAA\
YP_003108442.1|NC_013123.1|44507|44509|R	\TGA\
YP_003108443.1|NC_013123.1|45018|45020|R	\TAA\
YP_003108444.1|NC_013123.1|45311|45313|R	\TAA\
YP_003108445.1|NC_013123.1|46714|46716|R	\TAA\
YP_003108446.1|NC_013123.1|48201|48203|R	\TAA\
YP_003108447.1|NC_013123.1|49009|49011|R	\TAA\
YP_003108448.1|NC_013123.1|50065|50067|R	\TAA\
YP_003108449.1|NC_013123.1|50659|50661|R	\TAA\
YP_003108450.1|NC_013123.1|52070|52072|R	\TAA\
YP_003108451.1|NC_013123.1|53239|53241|R	\TAA\
YP_003108452.1|NC_013123.1|55077|55079|D	\TAA\
YP_003108453.1|NC_013123.1|57894|57896|D	\TAA\
YP_003108454.1|NC_013123.1|58836|58838|D	\TAA\
YP_003108455.1|NC_013123.1|59801|59803|D	\TAA\
YP_003108456.1|NC_013123.1|61193|61195|D	\TAA\
YP_003108457.1|NC_013123.1|61405|61407|D	\TAA\
YP_003108458.1|NC_013123.1|61557|61559|D	\TAA\
YP_003108459.1|NC_013123.1|61871|61873|R	\TAG\
YP_003108460.1|NC_013123.1|63673|63675|D	\TAA\
YP_003108461.1|NC_013123.1|63693|63695|R	\TAA\
YP_003108462.1|NC_013123.1|68050|68052|R	\TAA\
YP_003108463.1|NC_013123.1|72009|72011|R	\TGA\
YP_003108464.1|NC_013123.1|72418|72420|R	\TAA\
YP_003108465.1|NC_013123.1|72960|72962|R	\TAA\
YP_003108466.1|NC_013123.1|73664|73666|R	\TAG\
YP_003108467.1|NC_013123.1|74496|74498|R	\TAA\
YP_003108468.1|NC_013123.1|78702|78704|D	\TAA\
YP_003108469.1|NC_013123.1|81735|81737|D	\TAA\
YP_003108470.1|NC_013123.1|83082|83084|D	\TAA\
YP_003108471.1|NC_013123.1|83613|83615|D	\TAA\
YP_003108472.1|NC_013123.1|84193|84195|D	\TAA\
YP_003108473.1|NC_013123.1|85352|85354|D	\TAA\
YP_003108474.1|NC_013123.1|85360|85362|R	\TAG\
YP_003108475.1|NC_013123.1|85781|85783|R	\TAA\
YP_003108476.1|NC_013123.1|93157|93159|D	\TGA\
YP_003108477.1|NC_013123.1|94202|94204|D	\TAA\
YP_003108478.1|NC_013123.1|94215|94217|R	\TAA\
YP_003108479.1|NC_013123.1|98857|98859|D	\TAG\
YP_003108480.1|NC_013123.1|99033|99035|R	\TAG\
YP_003108481.1|NC_013123.1|99888|99890|R	\TAA\
YP_003108482.1|NC_013123.1|100608|100610|R	\TAA\
YP_003108483.1|NC_013123.1|101000|101002|R	\TAA\
YP_003108484.1|NC_013123.1|103480|103482|D	\TAA\
YP_003108485.1|NC_013123.1|104060|104062|D	\TAA\
YP_003108486.1|NC_013123.1|104260|104262|D	\TAG\
YP_003108487.1|NC_013123.1|104591|104593|D	\TAG\
YP_003108488.1|NC_013123.1|104565|104567|R	\TAA\
YP_003108489.1|NC_013123.1|105104|105106|R	\TGA\
YP_003108490.1|NC_013123.1|106455|106457|D	\TAA\
YP_003108491.1|NC_013123.1|107523|107525|D	\TAA\
YP_003108492.1|NC_013123.1|107726|107728|R	\TAG\
YP_003108493.1|NC_013123.1|108726|108728|R	\TAA\
YP_003108494.1|NC_013123.1|110135|110137|R	\TGA\
YP_003108495.1|NC_013123.1|112708|112710|D	\TGA\
YP_003108496.1|NC_013123.1|114127|114129|D	\TAA\
YP_003108497.1|NC_013123.1|115477|115479|D	\TAA\
YP_003108498.1|NC_013123.1|116466|116468|D	\TAA\
YP_003108499.1|NC_013123.1|116465|116467|R	\TAA\
YP_003108500.1|NC_013123.1|117948|117950|D	\TGA\
YP_003108501.1|NC_013123.1|119153|119155|D	\TAA\
YP_003108502.1|NC_013123.1|120532|120534|D	\TAA\
YP_003108503.1|NC_013123.1|124868|124870|D	\TAA\
YP_003108504.1|NC_013123.1|126768|126770|D	\TAG\
YP_003108505.1|NC_013123.1|127749|127751|D	\TAA\
YP_003108506.1|NC_013123.1|129086|129088|D	\TAA\
YP_003108507.1|NC_013123.1|130146|130148|D	\TAA\
YP_003108508.1|NC_013123.1|133449|133451|D	\TGA\
YP_003108509.1|NC_013123.1|134384|134386|D	\TGA\
YP_003108510.1|NC_013123.1|135163|135165|D	\TAA\
YP_003108511.1|NC_013123.1|136224|136226|D	\TAG\
YP_003108512.1|NC_013123.1|136939|136941|D	\TAA\
YP_003108513.1|NC_013123.1|138245|138247|D	\TAA\
YP_003108514.1|NC_013123.1|138230|138232|R	\TAA\
YP_003108515.1|NC_013123.1|138979|138981|R	\TGA\
YP_003108516.1|NC_013123.1|140744|140746|R	\TAA\
YP_003108517.1|NC_013123.1|141563|141565|R	\TAA\
YP_003108518.1|NC_013123.1|142546|142548|R	\TGA\
YP_003108519.1|NC_013123.1|143115|143117|R	\TGA\
YP_003108520.1|NC_013123.1|144633|144635|R	\TAA\
YP_003108521.1|NC_013123.1|148590|148592|D	\TAG\
YP_003108522.1|NC_013123.1|149823|149825|D	\TAA\
YP_003108523.1|NC_013123.1|151052|151054|D	\TAA\
YP_003108524.1|NC_013123.1|152922|152924|D	\TAA\
YP_003108525.1|NC_013123.1|152921|152923|R	\TAA\
YP_003108526.1|NC_013123.1|154215|154217|R	\TAA\
YP_003108527.1|NC_013123.1|157813|157815|D	\TAA\
YP_003108528.1|NC_013123.1|158144|158146|D	\TGA\
YP_003108529.1|NC_013123.1|159675|159677|D	\TAA\
YP_003108530.1|NC_013123.1|160580|160582|D	\TAA\
YP_003108531.1|NC_013123.1|160577|160579|R	\TAA\
YP_003108532.1|NC_013123.1|161902|161904|R	\TAA\
YP_003108533.1|NC_013123.1|162836|162838|R	\TAA\
YP_003108534.1|NC_013123.1|165532|165534|R	\TAA\
YP_003108535.1|NC_013123.1|166206|166208|R	\TAA\
YP_003108536.1|NC_013123.1|166675|166677|R	\TAA\
YP_003108537.1|NC_013123.1|167468|167470|R	\TAG\
YP_003108538.1|NC_013123.1|169851|169853|R	\TAA\
YP_003108539.1|NC_013123.1|172285|172287|R	\TAA\
YP_003108540.1|NC_013123.1|173602|173604|R	\TAA\
YP_003108541.1|NC_013123.1|174483|174485|R	\TAA\
YP_003108542.1|NC_013123.1|175575|175577|D	\TAA\
YP_003108543.1|NC_013123.1|175564|175566|R	\TAA\
YP_003108544.1|NC_013123.1|176576|176578|R	\TAA\
YP_003108545.1|NC_013123.1|180906|180908|R	\TAA\
YP_003108546.1|NC_013123.1|183798|183800|D	\TAA\
YP_003108547.1|NC_013123.1|185203|185205|D	\TAA\
YP_003108548.1|NC_013123.1|185654|185656|D	\TAA\
YP_003108549.1|NC_013123.1|185911|185913|D	\TAA\
YP_003108550.1|NC_013123.1|186633|186635|D	\TAA\
YP_003108551.1|NC_013123.1|187152|187154|D	\TAA\
YP_003108552.1|NC_013123.1|187612|187614|D	\TAG\
YP_003108553.1|NC_013123.1|187779|187781|R	\TAA\
YP_003108554.1|NC_013123.1|188653|188655|R	\TAA\
YP_003108555.1|NC_013123.1|190589|190591|R	\TAA\
YP_003108556.1|NC_013123.1|192694|192696|D	\TAA\
YP_003108557.1|NC_013123.1|193476|193478|D	\TAA\
YP_003108558.1|NC_013123.1|194701|194703|D	\TAA\
YP_003108559.1|NC_013123.1|194959|194961|D	\TAA\
YP_003108560.1|NC_013123.1|195713|195715|D	\TAA\
YP_003108561.1|NC_013123.1|195712|195714|R	\TAA\
YP_003108562.1|NC_013123.1|196701|196703|R	\TAA\
YP_003108563.1|NC_013123.1|198217|198219|R	\TAA\
YP_003108564.1|NC_013123.1|200134|200136|D	\TAA\
YP_003108565.1|NC_013123.1|202829|202831|D	\TAA\
YP_003108566.1|NC_013123.1|203952|203954|D	\TAA\
YP_003108567.1|NC_013123.1|204766|204768|D	\TAA\
YP_003108568.1|NC_013123.1|204751|204753|R	\TAA\
YP_003108569.1|NC_013123.1|206830|206832|D	\TAA\
YP_003108570.1|NC_013123.1|207119|207121|D	\TAA\
YP_003108571.1|NC_013123.1|207534|207536|D	\TAA\
YP_003108572.1|NC_013123.1|207831|207833|R	\TAA\
YP_003108573.1|NC_013123.1|209495|209497|R	\TAA\
YP_003108574.1|NC_013123.1|210024|210026|R	\TAA\
YP_003108575.1|NC_013123.1|212860|212862|D	\TAG\
YP_003108576.1|NC_013123.1|213636|213638|D	\TAA\
YP_003108577.1|NC_013123.1|214906|214908|D	\TAA\
YP_003108578.1|NC_013123.1|216122|216124|D	\TAA\
YP_003108579.1|NC_013123.1|217161|217163|D	\TAG\
YP_003108580.1|NC_013123.1|218755|218757|D	\TAA\
YP_003108581.1|NC_013123.1|218747|218749|R	\TAA\
YP_003108582.1|NC_013123.1|219909|219911|R	\TAA\
YP_003108583.1|NC_013123.1|221057|221059|R	\TGA\
YP_003108584.1|NC_013123.1|221894|221896|R	\TAA\
YP_003108585.1|NC_013123.1|222935|222937|R	\TAA\
YP_003108586.1|NC_013123.1|223287|223289|R	\TAA\
YP_003108587.1|NC_013123.1|224528|224530|R	\TAA\
YP_003108588.1|NC_013123.1|225068|225070|R	\TGA\
YP_003108589.1|NC_013123.1|225550|225552|R	\TAG\
YP_003108590.1|NC_013123.1|226078|226080|R	\TAA\
YP_003108591.1|NC_013123.1|227946|227948|R	\TAG\
YP_003108592.1|NC_013123.1|229838|229840|D	\TAA\
YP_003108593.1|NC_013123.1|230216|230218|D	\TAA\
YP_003108594.1|NC_013123.1|230190|230192|R	\TAA\
YP_003108595.1|NC_013123.1|231175|231177|R	\TAA\
YP_003108596.1|NC_013123.1|233437|233439|R	\TAA\
YP_003108597.1|NC_013123.1|234471|234473|R	\TAA\
YP_003108598.1|NC_013123.1|236555|236557|R	\TAA\
YP_003108599.1|NC_013123.1|236862|236864|R	\TAA\
YP_003108600.1|NC_013123.1|237885|237887|D	\TAA\
YP_003108601.1|NC_013123.1|238265|238267|D	\TAA\
YP_003108602.1|NC_013123.1|238747|238749|D	\TAA\
YP_003108603.1|NC_013123.1|240844|240846|D	\TGA\
YP_003108604.1|NC_013123.1|241168|241170|D	\TAA\
YP_003108605.1|NC_013123.1|241804|241806|D	\TAA\
YP_003108606.1|NC_013123.1|242422|242424|D	\TAA\
YP_003108607.1|NC_013123.1|242862|242864|D	\TGA\
YP_003108608.1|NC_013123.1|243825|243827|D	\TAA\
YP_003108609.1|NC_013123.1|244115|244117|D	\TAA\
YP_003108610.1|NC_013123.1|244521|244523|D	\TAA\
YP_003108611.1|NC_013123.1|245212|245214|D	\TAA\
YP_003108612.1|NC_013123.1|245640|245642|D	\TGA\
YP_003108613.1|NC_013123.1|245903|245905|D	\TAA\
YP_003108614.1|NC_013123.1|246273|246275|D	\TGA\
YP_003108615.1|NC_013123.1|246530|246532|D	\TAA\
YP_003108616.1|NC_013123.1|247103|247105|D	\TAA\
YP_003108617.1|NC_013123.1|247384|247386|D	\TAA\
YP_003108618.1|NC_013123.1|247809|247811|D	\TAA\
YP_003108619.1|NC_013123.1|248370|248372|D	\TAA\
YP_003108620.1|NC_013123.1|248688|248690|D	\TAA\
YP_003108621.1|NC_013123.1|249413|249415|D	\TAA\
YP_003108622.1|NC_013123.1|249871|249873|D	\TGA\
YP_003108623.1|NC_013123.1|251383|251385|D	\TAA\
YP_003108624.1|NC_013123.1|251513|251515|D	\TAA\
YP_003108625.1|NC_013123.1|251922|251924|D	\TAA\
YP_003108626.1|NC_013123.1|252489|252491|D	\TAA\
YP_003108627.1|NC_013123.1|253186|253188|D	\TAA\
YP_003108628.1|NC_013123.1|254254|254256|D	\TGA\
YP_003108629.1|NC_013123.1|254619|254621|D	\TAA\
YP_003108630.1|NC_013123.1|254618|254620|R	\TAA\
YP_003108631.1|NC_013123.1|256712|256714|R	\TAG\
YP_003108632.1|NC_013123.1|258076|258078|R	\TGA\
YP_003108633.1|NC_013123.1|261087|261089|D	\TGA\
YP_003108634.1|NC_013123.1|261100|261102|R	\TAA\
YP_003108635.1|NC_013123.1|263731|263733|D	\TAA\
YP_003108636.1|NC_013123.1|264865|264867|D	\TAA\
YP_003108637.1|NC_013123.1|264859|264861|R	\TAA\
YP_003108638.1|NC_013123.1|266670|266672|D	\TAA\
YP_003108639.1|NC_013123.1|266669|266671|R	\TAA\
YP_003108640.1|NC_013123.1|268047|268049|D	\TAA\
YP_003108641.1|NC_013123.1|268987|268989|D	\TGA\
YP_003108642.1|NC_013123.1|269730|269732|D	\TAA\
YP_003108643.1|NC_013123.1|269729|269731|R	\TAA\
YP_003108644.1|NC_013123.1|270892|270894|R	\TAA\
YP_003108645.1|NC_013123.1|272219|272221|R	\TAA\
YP_003108646.1|NC_013123.1|273265|273267|R	\TAA\
YP_003108647.1|NC_013123.1|273530|273532|R	\TAA\
YP_003108648.1|NC_013123.1|275272|275274|R	\TAA\

; Host name	nic22
; Job started	2012-05-05.012048
; Job done	2012-05-05.012048
; Seconds	0.16
;	user	0.16
;	system	0.04
;	cuser	0
;	csystem	0