-- dump date 20111121_011209 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001654092.1 166153974 5858769 1..1017 1 NC_010287.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1017 hemB 5858769 hemB Chlamydia trachomatis 434/Bu delta-aminolevulinic acid dehydratase YP_001654092.1 1 D 471472 CDS YP_001654093.1 166153975 5857942 complement(1043..2440) 1 NC_010287.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 2440 nqrA 5857942 nqrA Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit A YP_001654093.1 1043 R 471472 CDS YP_001654094.1 166153976 5858572 complement(2462..2896) 1 NC_010287.1 hypothetical protein 2896 5858572 CTL0003 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654094.1 2462 R 471472 CDS YP_001654095.1 166153977 5858782 3010..5157 1 NC_010287.1 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 5157 greA 5858782 greA Chlamydia trachomatis 434/Bu transcript cleavage factor/unknown domain fusion protein YP_001654095.1 3010 D 471472 CDS YP_001654096.1 166153978 5857932 5345..6547 1 NC_010287.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 6547 aspC 5857932 aspC Chlamydia trachomatis 434/Bu aromatic amino acid aminotransferase YP_001654096.1 5345 D 471472 CDS YP_001654097.1 166153979 5858612 6522..7532 1 NC_010287.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 7532 5858612 CTL0006 Chlamydia trachomatis 434/Bu rod shape-determining protein MreC YP_001654097.1 6522 D 471472 CDS YP_001654098.1 166153980 5858760 complement(7548..10628) 1 NC_010287.1 exodeoxyribonuclease V beta chain 10628 recB 5858760 recB Chlamydia trachomatis 434/Bu exodeoxyribonuclease V beta chain YP_001654098.1 7548 R 471472 CDS YP_001654099.1 166153981 5858560 complement(10630..13650) 1 NC_010287.1 exodeoxyribonuclease V gamma chain 13650 recC 5858560 recC Chlamydia trachomatis 434/Bu exodeoxyribonuclease V gamma chain YP_001654099.1 10630 R 471472 CDS YP_001654100.1 166153982 5858002 13663..15342 1 NC_010287.1 putative membrane efflux protein 15342 5858002 CTL0009 Chlamydia trachomatis 434/Bu putative membrane efflux protein YP_001654100.1 13663 D 471472 CDS YP_001654101.1 166153983 5858731 complement(15362..16177) 1 NC_010287.1 hypothetical protein 16177 5858731 CTL0010 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654101.1 15362 R 471472 CDS YP_001654102.1 166153984 5858735 17072..19645 1 NC_010287.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 19645 topA 5858735 topA Chlamydia trachomatis 434/Bu DNA topoisomerase I/SWI domain fusion protein YP_001654102.1 17072 D 471472 CDS YP_001654103.1 166153985 5858362 complement(19675..20679) 1 NC_010287.1 putative oxidoreductase 20679 5858362 CTL0012 Chlamydia trachomatis 434/Bu putative oxidoreductase YP_001654103.1 19675 R 471472 CDS YP_001654104.1 166153986 5858065 complement(20658..20954) 1 NC_010287.1 integral membrane protein 20954 5858065 CTL0013 Chlamydia trachomatis 434/Bu integral membrane protein YP_001654104.1 20658 R 471472 CDS YP_001654105.1 166153987 5857982 21059..22438 1 NC_010287.1 hypothetical protein 22438 5857982 CTL0014 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654105.1 21059 D 471472 CDS YP_001654106.1 166153988 5858794 22438..23016 1 NC_010287.1 hypothetical protein 23016 5858794 CTL0015 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654106.1 22438 D 471472 CDS YP_001654107.1 166153989 5858701 23007..24281 1 NC_010287.1 hypothetical protein 24281 5858701 CTL0016 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654107.1 23007 D 471472 CDS YP_001654108.1 166153990 5857973 24284..24820 1 NC_010287.1 Similar to many proposed 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 24820 5857973 CTL0017 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654108.1 24284 D 471472 CDS YP_001654109.1 166153991 5857960 25080..26138 1 NC_010287.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 26138 recA 5857960 recA Chlamydia trachomatis 434/Bu recombinase A YP_001654109.1 25080 D 471472 CDS YP_001654110.1 166153992 5858568 26424..28250 1 NC_010287.1 putative exported lipoprotein 28250 5858568 CTL0019 Chlamydia trachomatis 434/Bu putative exported lipoprotein YP_001654110.1 26424 D 471472 CDS YP_001654111.1 166153993 5858050 28247..29737 1 NC_010287.1 exodeoxyribonuclease V alpha chain 29737 recD 5858050 recD Chlamydia trachomatis 434/Bu exodeoxyribonuclease V alpha chain YP_001654111.1 28247 D 471472 CDS YP_001654112.1 166153994 5858007 29803..29982 1 NC_010287.1 hypothetical protein 29982 5858007 CTL0021 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654112.1 29803 D 471472 CDS YP_001654113.1 166153995 5858092 complement(30083..30802) 1 NC_010287.1 ABC transporter ATP-binding protein 30802 5858092 CTL0022 Chlamydia trachomatis 434/Bu ABC transporter ATP-binding protein YP_001654113.1 30083 R 471472 CDS YP_001654114.1 166153996 5857968 complement(30811..31299) 1 NC_010287.1 hypothetical protein 31299 5857968 CTL0023 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654114.1 30811 R 471472 CDS YP_001654115.1 166153997 5858018 complement(31296..32105) 1 NC_010287.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 32105 kdsA 5858018 kdsA Chlamydia trachomatis 434/Bu 2-dehydro-3-deoxyphosphooctonate aldolase YP_001654115.1 31296 R 471472 CDS YP_001654116.1 166153998 5857924 32591..32884 1 NC_010287.1 hypothetical protein 32884 5857924 CTL0025 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654116.1 32591 D 471472 CDS YP_001654117.1 166153999 5858019 32884..33201 1 NC_010287.1 hypothetical protein 33201 5858019 CTL0026 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654117.1 32884 D 471472 CDS YP_001654118.1 166154000 5858191 33283..34290 1 NC_010287.1 ribosomal large subunit pseudouridine synthase D 34290 sfhB 5858191 sfhB Chlamydia trachomatis 434/Bu ribosomal large subunit pseudouridine synthase D YP_001654118.1 33283 D 471472 CDS YP_001654119.1 166154001 5858159 34390..34626 1 NC_010287.1 hypothetical protein 34626 5858159 CTL0028 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654119.1 34390 D 471472 CDS YP_001654120.1 166154002 5858093 complement(34765..36237) 1 NC_010287.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 36237 gyrA2 5858093 gyrA2 Chlamydia trachomatis 434/Bu DNA topoisomerase IV subunit A YP_001654120.1 34765 R 471472 CDS YP_001654121.1 166154003 5858181 complement(36252..38069) 1 NC_010287.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 38069 gyrB 5858181 gyrB Chlamydia trachomatis 434/Bu DNA topoisomerase IV subunit B YP_001654121.1 36252 R 471472 CDS YP_001654122.1 166154004 5858148 38449..39456 1 NC_010287.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 39456 hemA 5858148 hemA Chlamydia trachomatis 434/Bu glutamyl-tRNA reductase YP_001654122.1 38449 D 471472 CDS YP_001654123.1 166154005 5858045 40168..40569 1 NC_010287.1 Type III secretion system chaperone 40569 sycE 5858045 sycE Chlamydia trachomatis 434/Bu Type III secretion system chaperone YP_001654123.1 40168 D 471472 CDS YP_001654124.1 166154006 5858226 40573..43062 1 NC_010287.1 phosphopeptide binding protein ( to be a TTSS protein) 43062 5858226 CTL0033 Chlamydia trachomatis 434/Bu phosphopeptide binding protein ( to be a TTSS protein) YP_001654124.1 40573 D 471472 CDS YP_001654125.1 166154007 5857951 43106..43357 1 NC_010287.1 hypothetical protein 43357 5857951 CTL0034 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654125.1 43106 D 471472 CDS YP_001654126.1 166154008 5857950 43384..43635 1 NC_010287.1 hypothetical protein 43635 5857950 CTL0035 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654126.1 43384 D 471472 CDS YP_001654127.1 166154009 5858714 43654..44103 1 NC_010287.1 hypothetical protein 44103 5858714 CTL0036 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654127.1 43654 D 471472 CDS YP_001654128.1 166154010 5857938 44123..44794 1 NC_010287.1 hypothetical protein 44794 5857938 CTL0037 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654128.1 44123 D 471472 CDS YP_001654129.1 166154011 5858830 44796..46124 1 NC_010287.1 type III secretion system ATPase 46124 sctN 5858830 sctN Chlamydia trachomatis 434/Bu type III secretion system ATPase YP_001654129.1 44796 D 471472 CDS YP_001654130.1 166154012 5858566 46147..46653 1 NC_010287.1 hypothetical protein 46653 5858566 CTL0039 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654130.1 46147 D 471472 CDS YP_001654131.1 166154013 5858162 46657..47508 1 NC_010287.1 hypothetical protein 47508 5858162 CTL0040 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654131.1 46657 D 471472 CDS YP_001654132.1 166154014 5858835 47518..48639 1 NC_010287.1 type III secretion system protein 48639 sctQ 5858835 sctQ Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654132.1 47518 D 471472 CDS YP_001654133.1 166154015 5857908 48774..50246 1 NC_010287.1 putative serine/threonine-protein kinase (TTSS effector protein) 50246 pkn5 5857908 pkn5 Chlamydia trachomatis 434/Bu putative serine/threonine-protein kinase (TTSS effector protein) YP_001654133.1 48774 D 471472 CDS YP_001654134.1 166154016 5858779 50243..53008 1 NC_010287.1 Type III secretion structural protein (outer membrane ring) 53008 5858779 CTL0043 Chlamydia trachomatis 434/Bu Type III secretion structural protein (outer membrane ring) YP_001654134.1 50243 D 471472 CDS YP_001654135.1 166154017 5858268 complement(53322..54392) 1 NC_010287.1 ATP:guanido phosphotransferase 54392 aspC 5858268 aspC Chlamydia trachomatis 434/Bu ATP:guanido phosphotransferase YP_001654135.1 53322 R 471472 CDS YP_001654136.1 166154018 5858468 complement(54382..54903) 1 NC_010287.1 hypothetical protein 54903 5858468 CTL0045 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654136.1 54382 R 471472 CDS YP_001654137.1 166154019 5858332 complement(55274..55813) 1 NC_010287.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 55813 frr 5858332 frr Chlamydia trachomatis 434/Bu ribosome recycling factor YP_001654137.1 55274 R 471472 CDS YP_001654138.1 166154020 5858098 complement(55810..56547) 1 NC_010287.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 56547 pyrH 5858098 pyrH Chlamydia trachomatis 434/Bu uridylate kinase YP_001654138.1 55810 R 471472 CDS YP_001654139.1 166154021 5858656 complement(56560..57408) 1 NC_010287.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 57408 tsf 5858656 tsf Chlamydia trachomatis 434/Bu elongation factor Ts YP_001654139.1 56560 R 471472 CDS YP_001654140.1 166154022 5858829 complement(57405..58253) 1 NC_010287.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 58253 rpsB 5858829 rpsB Chlamydia trachomatis 434/Bu 30S ribosomal protein S2 YP_001654140.1 57405 R 471472 CDS YP_001654141.1 166154023 5858320 complement(58637..59821) 1 NC_010287.1 major outer membrane protein 59821 ompA 5858320 ompA Chlamydia trachomatis 434/Bu major outer membrane protein YP_001654141.1 58637 R 471472 CDS YP_001654142.1 166154024 5858500 60428..63670 1 NC_010287.1 penicillin-binding protein 63670 pbpB 5858500 pbpB Chlamydia trachomatis 434/Bu penicillin-binding protein YP_001654142.1 60428 D 471472 CDS YP_001654143.1 166154025 5857981 63734..64741 1 NC_010287.1 TPR repeat-containing protein 64741 5857981 CTL0052 Chlamydia trachomatis 434/Bu TPR repeat-containing protein YP_001654143.1 63734 D 471472 CDS YP_001654144.1 166154026 5858825 65083..66534 1 NC_010287.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 66534 5858825 CTL0053 Chlamydia trachomatis 434/Bu cysteine desulfurase activator complex subunit SufB YP_001654144.1 65083 D 471472 CDS YP_001654145.1 166154027 5858763 66537..67304 1 NC_010287.1 ABC transporter ATP-binding protein 67304 5858763 CTL0054 Chlamydia trachomatis 434/Bu ABC transporter ATP-binding protein YP_001654145.1 66537 D 471472 CDS YP_001654146.1 166154028 5858055 67308..68495 1 NC_010287.1 hypothetical protein 68495 5858055 CTL0055 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654146.1 67308 D 471472 CDS YP_001654147.1 166154029 5858054 68488..69693 1 NC_010287.1 cysteine desulfurase 69693 sufS 5858054 sufS Chlamydia trachomatis 434/Bu cysteine desulfurase YP_001654147.1 68488 D 471472 CDS YP_001654148.1 166154030 5858632 69829..70674 1 NC_010287.1 putative chromosome partitioning protein 70674 parB 5858632 parB Chlamydia trachomatis 434/Bu putative chromosome partitioning protein YP_001654148.1 69829 D 471472 CDS YP_001654149.1 166154031 5858431 complement(70666..71496) 1 NC_010287.1 ABC transport protein, ATPase component 71496 dppF 5858431 dppF Chlamydia trachomatis 434/Bu ABC transport protein, ATPase component YP_001654149.1 70666 R 471472 CDS YP_001654150.1 166154032 5858660 complement(71489..72454) 1 NC_010287.1 ABC transport protein, ATPase component 72454 dppD 5858660 dppD Chlamydia trachomatis 434/Bu ABC transport protein, ATPase component YP_001654150.1 71489 R 471472 CDS YP_001654151.1 166154033 5858521 72615..73289 1 NC_010287.1 hypothetical protein 73289 5858521 CTL0060 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654151.1 72615 D 471472 CDS YP_001654152.1 166154034 5858053 73292..74572 1 NC_010287.1 low-affinity inorganic phosphate transporter 74572 5858053 CTL0061 Chlamydia trachomatis 434/Bu low-affinity inorganic phosphate transporter YP_001654152.1 73292 D 471472 CDS YP_001654153.1 166154035 5858720 74711..75922 1 NC_010287.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 75922 pgk 5858720 pgk Chlamydia trachomatis 434/Bu phosphoglycerate kinase YP_001654153.1 74711 D 471472 CDS YP_001654154.1 166154036 5858442 76182..77150 1 NC_010287.1 hypothetical protein 77150 5858442 CTL0063 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654154.1 76182 D 471472 CDS YP_001654155.1 166154037 5858128 77201..78397 1 NC_010287.1 hypothetical protein 78397 5858128 CTL0064 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654155.1 77201 D 471472 CDS YP_001654156.1 166154038 5857976 78483..79661 1 NC_010287.1 hypothetical protein 79661 5857976 CTL0065 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654156.1 78483 D 471472 CDS YP_001654157.1 166154039 5857958 complement(79658..80293) 1 NC_010287.1 endonuclease III 80293 nth 5857958 nth Chlamydia trachomatis 434/Bu endonuclease III YP_001654157.1 79658 R 471472 CDS YP_001654158.1 166154040 5858796 complement(80300..81634) 1 NC_010287.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 81634 trmE 5858796 trmE Chlamydia trachomatis 434/Bu tRNA modification GTPase TrmE YP_001654158.1 80300 R 471472 CDS YP_001654159.1 166154041 5858418 81902..82807 1 NC_010287.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 82807 psdD 5858418 psdD Chlamydia trachomatis 434/Bu phosphatidylserine decarboxylase YP_001654159.1 81902 D 471472 CDS YP_001654160.1 166154042 5858532 82872..84197 1 NC_010287.1 note the PF07719 Tetratricopeptide repeat motif; hypothetical protein 84197 5858532 CTL0069 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654160.1 82872 D 471472 CDS YP_001654161.1 166154043 5857962 84456..87365 1 NC_010287.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 87365 secA 5857962 secA Chlamydia trachomatis 434/Bu preprotein translocase subunit SecA YP_001654161.1 84456 D 471472 CDS YP_001654162.1 166154044 5858249 complement(87459..87986) 1 NC_010287.1 hypothetical protein 87986 5858249 CTL0071 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654162.1 87459 R 471472 CDS YP_001654163.1 166154045 5857964 complement(88063..89535) 1 NC_010287.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 89535 engA 5857964 engA Chlamydia trachomatis 434/Bu GTP-binding protein EngA YP_001654163.1 88063 R 471472 CDS YP_001654164.1 166154046 5857984 complement(89651..90883) 1 NC_010287.1 polyA polymerase 90883 pcnB 5857984 pcnB Chlamydia trachomatis 434/Bu polyA polymerase YP_001654164.1 89651 R 471472 CDS YP_001654165.1 166154047 5858594 complement(90898..92157) 1 NC_010287.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 92157 clpX 5858594 clpX Chlamydia trachomatis 434/Bu ATP-dependent protease ATP-binding subunit ClpX YP_001654165.1 90898 R 471472 CDS YP_001654166.1 166154048 5858739 complement(92167..92778) 1 NC_010287.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 92778 clpP 5858739 clpP Chlamydia trachomatis 434/Bu ATP-dependent Clp protease proteolytic subunit YP_001654166.1 92167 R 471472 CDS YP_001654167.1 166154049 5858454 complement(92945..94273) 1 NC_010287.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 94273 tig 5858454 tig Chlamydia trachomatis 434/Bu trigger factor YP_001654167.1 92945 R 471472 CDS YP_001654168.1 166154050 5858311 94632..98123 1 NC_010287.1 putative helicase 98123 5858311 CTL0077 Chlamydia trachomatis 434/Bu putative helicase YP_001654168.1 94632 D 471472 CDS YP_001654169.1 166154051 5858075 98128..99228 1 NC_010287.1 rod shape-determining protein MreB 99228 mreB 5858075 mreB Chlamydia trachomatis 434/Bu rod shape-determining protein MreB YP_001654169.1 98128 D 471472 CDS YP_001654170.1 166154052 5858756 99225..101024 1 NC_010287.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 101024 pckA 5858756 pckA Chlamydia trachomatis 434/Bu phosphoenolpyruvate carboxykinase YP_001654170.1 99225 D 471472 CDS YP_001654171.1 166154053 5858432 101136..103439 1 NC_010287.1 hypothetical protein 103439 5858432 CTL0080 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654171.1 101136 D 471472 CDS YP_001654172.1 166154054 5857969 103466..104638 1 NC_010287.1 hypothetical protein 104638 5857969 CTL0081 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654172.1 103466 D 471472 CDS YP_001654173.1 166154055 5858130 complement(104704..105726) 1 NC_010287.1 outer membrane protein B 105726 ompB 5858130 ompB Chlamydia trachomatis 434/Bu outer membrane protein B YP_001654173.1 104704 R 471472 CDS YP_001654174.1 166154056 5858505 complement(105860..106864) 1 NC_010287.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 106864 gpsA 5858505 gpsA Chlamydia trachomatis 434/Bu NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001654174.1 105860 R 471472 CDS YP_001654175.1 166154057 5858036 complement(106861..108228) 1 NC_010287.1 UDP-N-acetylglucosamine pyrophosphorylase 108228 5858036 CTL0084 Chlamydia trachomatis 434/Bu UDP-N-acetylglucosamine pyrophosphorylase YP_001654175.1 106861 R 471472 CDS YP_001654176.1 166154058 5858106 complement(108240..108605) 1 NC_010287.1 hypothetical protein 108605 5858106 CTL0085 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654176.1 108240 R 471472 CDS YP_001654177.1 166154059 5858754 complement(108598..109902) 1 NC_010287.1 involved in type III protein export; type III secretion system ATPase 109902 fliI 5858754 fliI Chlamydia trachomatis 434/Bu type III secretion system ATPase YP_001654177.1 108598 R 471472 CDS YP_001654178.1 166154060 5858083 complement(109976..110500) 1 NC_010287.1 hypothetical protein 110500 5858083 CTL0087 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654178.1 109976 R 471472 CDS YP_001654179.1 166154061 5857963 complement(110505..111509) 1 NC_010287.1 type III secretion system protein 111509 fliF 5857963 fliF Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654179.1 110505 R 471472 CDS YP_001654180.1 166154062 5858033 complement(111783..112565) 1 NC_010287.1 note the NifU-like protein domains: PF01592;NifU-like N terminal domain and PF01106, NifU-like domain; hypothetical protein 112565 5858033 CTL0089 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654180.1 111783 R 471472 CDS YP_001654181.1 166154063 5858089 complement(112562..113716) 1 NC_010287.1 cysteine desulfurase 113716 5858089 CTL0090 Chlamydia trachomatis 434/Bu cysteine desulfurase YP_001654181.1 112562 R 471472 CDS YP_001654182.1 166154064 5858631 complement(113671..114351) 1 NC_010287.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 114351 pgmA 5858631 pgmA Chlamydia trachomatis 434/Bu phosphoglyceromutase YP_001654182.1 113671 R 471472 CDS YP_001654183.1 166154065 5858449 114646..115371 1 NC_010287.1 ribosomal large subunit pseudouridine synthase B 115371 5858449 CTL0092 Chlamydia trachomatis 434/Bu ribosomal large subunit pseudouridine synthase B YP_001654183.1 114646 D 471472 CDS YP_001654184.1 166154066 5857959 115490..116014 1 NC_010287.1 hypothetical protein 116014 5857959 CTL0093 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654184.1 115490 D 471472 CDS YP_001654185.1 166154067 5858090 116041..116595 1 NC_010287.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 116595 birA 5858090 birA Chlamydia trachomatis 434/Bu biotin--protein ligase YP_001654185.1 116041 D 471472 CDS YP_001654186.1 166154068 5858029 complement(116602..117741) 1 NC_010287.1 cell cycle protein 117741 5858029 CTL0095 Chlamydia trachomatis 434/Bu cell cycle protein YP_001654186.1 116602 R 471472 CDS YP_001654187.1 166154069 5858085 complement(117833..119812) 1 NC_010287.1 cation transporting ATPase 119812 5858085 CTL0096 Chlamydia trachomatis 434/Bu cation transporting ATPase YP_001654187.1 117833 R 471472 CDS YP_001654188.1 166154070 5858773 complement(119836..120582) 1 NC_010287.1 putative integral membrane protein 120582 5858773 CTL0097 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654188.1 119836 R 471472 CDS YP_001654189.1 166154071 5857961 complement(120619..121905) 1 NC_010287.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 121905 serS 5857961 serS Chlamydia trachomatis 434/Bu seryl-tRNA synthetase YP_001654189.1 120619 R 471472 CDS YP_001654190.1 166154072 5858243 121947..123074 1 NC_010287.1 riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) 123074 ribD 5858243 ribD Chlamydia trachomatis 434/Bu riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) YP_001654190.1 121947 D 471472 CDS YP_001654191.1 166154073 5858517 123184..124458 1 NC_010287.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 124458 ribA 5858517 ribA Chlamydia trachomatis 434/Bu bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_001654191.1 123184 D 471472 CDS YP_001654192.1 166154074 5858575 124427..124900 1 NC_010287.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 124900 ribH 5858575 ribH Chlamydia trachomatis 434/Bu 6,7-dimethyl-8-ribityllumazine synthase YP_001654192.1 124427 D 471472 CDS YP_001654193.1 166154075 5858555 complement(124951..126297) 1 NC_010287.1 hypothetical protein 126297 5858555 CTL0102 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654193.1 124951 R 471472 CDS YP_001654194.1 166154076 5858734 126682..127347 1 NC_010287.1 putative lipoprotein 127347 5858734 CTL0103 Chlamydia trachomatis 434/Bu putative lipoprotein YP_001654194.1 126682 D 471472 CDS YP_001654195.1 166154077 5858724 127452..128819 1 NC_010287.1 Na(+)-linked D-alanine glycine permease 128819 dagA 5858724 dagA Chlamydia trachomatis 434/Bu Na(+)-linked D-alanine glycine permease YP_001654195.1 127452 D 471472 CDS YP_001654196.1 166154078 5858434 128877..129329 1 NC_010287.1 Note the PF01161;Phosphatidylethanolamine-binding motif; hypothetical protein 129329 5858434 CTL0105 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654196.1 128877 D 471472 CDS YP_001654197.1 166154079 5858088 complement(129338..129997) 1 NC_010287.1 SET domain-containing protein 129997 5858088 CTL0106 Chlamydia trachomatis 434/Bu SET domain-containing protein YP_001654197.1 129338 R 471472 CDS YP_001654198.1 166154080 5858459 complement(129994..130782) 1 NC_010287.1 Zn-dependent hydrolase 130782 5858459 CTL0107 Chlamydia trachomatis 434/Bu Zn-dependent hydrolase YP_001654198.1 129994 R 471472 CDS YP_001654199.1 166154081 5858134 complement(130786..133185) 1 NC_010287.1 cell division protein 133185 ftsK 5858134 ftsK Chlamydia trachomatis 434/Bu cell division protein YP_001654199.1 130786 R 471472 CDS YP_001654200.1 166154082 5858486 complement(139457..140752) 1 NC_010287.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 140752 dmpP 5858486 dmpP Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit F YP_001654200.1 139457 R 471472 CDS YP_001654201.1 166154083 5858687 complement(140895..141239) 1 NC_010287.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 141239 yajC 5858687 yajC Chlamydia trachomatis 434/Bu preprotein translocase subunit YajC YP_001654201.1 140895 R 471472 CDS YP_001654202.1 166154084 5858071 complement(141344..142534) 1 NC_010287.1 rRNA methyltransferase 142534 5858071 CTL0111 Chlamydia trachomatis 434/Bu rRNA methyltransferase YP_001654202.1 141344 R 471472 CDS YP_001654203.1 166154085 5858703 complement(142722..143099) 1 NC_010287.1 histone H1--like developmental protein 143099 hctA 5858703 hctA Chlamydia trachomatis 434/Bu histone H1--like developmental protein YP_001654203.1 142722 R 471472 CDS YP_001654204.1 166154086 5858678 143495..145963 1 NC_010287.1 hypothetical protein 145963 5858678 CTL0113 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654204.1 143495 D 471472 CDS YP_001654205.1 166154087 5858215 complement(145955..147229) 1 NC_010287.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 147229 hemG 5858215 hemG Chlamydia trachomatis 434/Bu protoporphyrinogen oxidase YP_001654205.1 145955 R 471472 CDS YP_001654206.1 166154088 5858133 complement(147226..148599) 1 NC_010287.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 148599 hemN 5858133 hemN Chlamydia trachomatis 434/Bu coproporphyrinogen III oxidase YP_001654206.1 147226 R 471472 CDS YP_001654207.1 166154089 5858692 complement(148572..149582) 1 NC_010287.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 149582 hemE 5858692 hemE Chlamydia trachomatis 434/Bu uroporphyrinogen decarboxylase YP_001654207.1 148572 R 471472 CDS YP_001654208.1 166154090 5858600 complement(149595..152834) 1 NC_010287.1 transcription-repair coupling factor 152834 mfd 5858600 mfd Chlamydia trachomatis 434/Bu transcription-repair coupling factor YP_001654208.1 149595 R 471472 CDS YP_001654209.1 166154091 5858757 complement(152810..155437) 1 NC_010287.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 155437 alaS 5858757 alaS Chlamydia trachomatis 434/Bu alanyl-tRNA synthetase YP_001654209.1 152810 R 471472 CDS YP_001654210.1 166154092 5858645 161262..163262 1 NC_010287.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 163262 tktB 5858645 tktB Chlamydia trachomatis 434/Bu transketolase YP_001654210.1 161262 D 471472 CDS YP_001654211.1 166154093 5858365 complement(163259..164128) 1 NC_010287.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 164128 amn 5858365 amn Chlamydia trachomatis 434/Bu AMP nucleosidase YP_001654211.1 163259 R 471472 CDS YP_001654212.1 166154094 5858478 164384..164920 1 NC_010287.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 164920 efp 5858478 efp Chlamydia trachomatis 434/Bu elongation factor P YP_001654212.1 164384 D 471472 CDS YP_001654213.1 166154095 5858625 complement(164936..165160) 1 NC_010287.1 hypothetical protein 165160 5858625 CTL0122 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654213.1 164936 R 471472 CDS YP_001654214.1 166154096 5858110 complement(165207..166079) 1 NC_010287.1 Note the PF00149;Calcineurin-like phosphoesterase motif; hypothetical protein 166079 5858110 CTL0123 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654214.1 165207 R 471472 CDS YP_001654215.1 166154097 5858068 complement(166160..167698) 1 NC_010287.1 60 kDa chaperonin GroEL 167698 groEL 5858068 groEL Chlamydia trachomatis 434/Bu 60 kDa chaperonin GroEL YP_001654215.1 166160 R 471472 CDS YP_001654216.1 166154098 5858336 168146..169498 1 NC_010287.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 169498 murF 5858336 murF Chlamydia trachomatis 434/Bu UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001654216.1 168146 D 471472 CDS YP_001654217.1 166154099 5858776 169644..170654 1 NC_010287.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 170654 mraY 5858776 mraY Chlamydia trachomatis 434/Bu phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001654217.1 169644 D 471472 CDS YP_001654218.1 166154100 5858642 170666..171916 1 NC_010287.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 171916 murD 5858642 murD Chlamydia trachomatis 434/Bu UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001654218.1 170666 D 471472 CDS YP_001654219.1 166154101 5858023 171913..172650 1 NC_010287.1 muramidase 172650 nlpD 5858023 nlpD Chlamydia trachomatis 434/Bu muramidase YP_001654219.1 171913 D 471472 CDS YP_001654220.1 166154102 5858063 172666..173823 1 NC_010287.1 cell division protein 173823 ftsW 5858063 ftsW Chlamydia trachomatis 434/Bu cell division protein YP_001654220.1 172666 D 471472 CDS YP_001654221.1 166154103 5858462 173732..174790 1 NC_010287.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 174790 murG 5858462 murG Chlamydia trachomatis 434/Bu undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001654221.1 173732 D 471472 CDS YP_001654222.1 166154104 5857988 174795..177206 1 NC_010287.1 catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 177206 murC 5857988 murC Chlamydia trachomatis 434/Bu bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase YP_001654222.1 174795 D 471472 CDS YP_001654223.1 166154105 5858026 complement(177243..177662) 1 NC_010287.1 hypothetical protein 177662 5858026 CTL0132 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654223.1 177243 R 471472 CDS YP_001654224.1 166154106 5858069 complement(177820..178626) 1 NC_010287.1 hypothetical protein 178626 5858069 CTL0133 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654224.1 177820 R 471472 CDS YP_001654225.1 166154107 5858111 178780..179112 1 NC_010287.1 anti-sigma F factor antagonist 179112 rbsV 5858111 rbsV Chlamydia trachomatis 434/Bu anti-sigma F factor antagonist YP_001654225.1 178780 D 471472 CDS YP_001654226.1 166154108 5858494 179116..180135 1 NC_010287.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 180135 miaA 5858494 miaA Chlamydia trachomatis 434/Bu tRNA delta(2)-isopentenylpyrophosphate transferase YP_001654226.1 179116 D 471472 CDS YP_001654227.1 166154109 5858571 complement(180140..181192) 1 NC_010287.1 Note the PF04055;Radical SAM superfamily motif; hypothetical protein 181192 5858571 CTL0136 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654227.1 180140 R 471472 CDS YP_001654228.1 166154110 5858060 181282..182964 1 NC_010287.1 hypothetical protein 182964 5858060 CTL0137 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654228.1 181282 D 471472 CDS YP_001654229.1 166154111 5858194 183418..183777 1 NC_010287.1 Note the Pfam PF02410;Domain of unknown function associated with iojap superfamily proteins; hypothetical protein 183777 5858194 CTL0138 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654229.1 183418 D 471472 CDS YP_001654230.1 166154112 5857965 183788..185044 1 NC_010287.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-(acyl carrier protein) synthase II 185044 fabF 5857965 fabF Chlamydia trachomatis 434/Bu 3-oxoacyl-(acyl carrier protein) synthase II YP_001654230.1 183788 D 471472 CDS YP_001654231.1 166154113 5858479 185041..185493 1 NC_010287.1 Note the Pfam PF00293;NUDIX domain; hypothetical protein 185493 5858479 CTL0140 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654231.1 185041 D 471472 CDS YP_001654232.1 166154114 5858049 complement(185574..186203) 1 NC_010287.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 186203 ppa 5858049 ppa Chlamydia trachomatis 434/Bu inorganic pyrophosphatase YP_001654232.1 185574 R 471472 CDS YP_001654233.1 166154115 5858157 186451..187491 1 NC_010287.1 leucine dehydrogenase 187491 ldh 5858157 ldh Chlamydia trachomatis 434/Bu leucine dehydrogenase YP_001654233.1 186451 D 471472 CDS YP_001654234.1 166154116 5858096 complement(187457..188485) 1 NC_010287.1 3'(2'),5'-bisphosphate nucleotidase 188485 cysQ 5858096 cysQ Chlamydia trachomatis 434/Bu 3'(2'),5'-bisphosphate nucleotidase YP_001654234.1 187457 R 471472 CDS YP_001654235.1 166154117 5857983 188783..189544 1 NC_010287.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 189544 5857983 CTL0144 Chlamydia trachomatis 434/Bu 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001654235.1 188783 D 471472 CDS YP_001654236.1 166154118 5858079 189552..191165 1 NC_010287.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--[acyl-carrier-protein] ligase 191165 aas 5858079 aas Chlamydia trachomatis 434/Bu long chain fatty acid--[acyl-carrier-protein] ligase YP_001654236.1 189552 D 471472 CDS YP_001654237.1 166154119 5858621 191208..192341 1 NC_010287.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 192341 bioF 5858621 bioF Chlamydia trachomatis 434/Bu 8-amino-7-oxononanoate synthase YP_001654237.1 191208 D 471472 CDS YP_001654238.1 166154120 5858030 complement(192260..194521) 1 NC_010287.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 194521 priA 5858030 priA Chlamydia trachomatis 434/Bu primosome assembly protein PriA YP_001654238.1 192260 R 471472 CDS YP_001654239.1 166154121 5858596 complement(194476..195165) 1 NC_010287.1 hypothetical protein 195165 5858596 CTL0148 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654239.1 194476 R 471472 CDS YP_001654240.1 166154122 5858193 195321..195815 1 NC_010287.1 protein disulfide isomerase 195815 5858193 CTL0149 Chlamydia trachomatis 434/Bu protein disulfide isomerase YP_001654240.1 195321 D 471472 CDS YP_001654241.1 166154123 5858105 196047..197627 1 NC_010287.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 197627 lysS 5858105 lysS Chlamydia trachomatis 434/Bu lysyl-tRNA synthetase YP_001654241.1 196047 D 471472 CDS YP_001654242.1 166154124 5858607 complement(197624..199117) 1 NC_010287.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 199117 cysS 5858607 cysS Chlamydia trachomatis 434/Bu cysteinyl-tRNA synthetase YP_001654242.1 197624 R 471472 CDS YP_001654243.1 166154125 5858606 199370..200419 1 NC_010287.1 hypothetical protein 200419 5858606 CTL0152 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654243.1 199370 D 471472 CDS YP_001654244.1 166154126 5858070 complement(200497..200859) 1 NC_010287.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 200859 rnpA 5858070 rnpA Chlamydia trachomatis 434/Bu ribonuclease P YP_001654244.1 200497 R 471472 CDS YP_001654245.1 166154127 5858753 complement(200872..201009) 1 NC_010287.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 201009 rpmH 5858753 rpmH Chlamydia trachomatis 434/Bu 50S ribosomal protein L34 YP_001654245.1 200872 R 471472 CDS YP_001654246.1 166154128 5858008 201486..201623 1 NC_010287.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 201623 rpmJ 5858008 rpmJ Chlamydia trachomatis 434/Bu 50S ribosomal protein L36 YP_001654246.1 201486 D 471472 CDS YP_001654247.1 166154129 5858719 201647..201952 1 NC_010287.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 201952 rpsN 5858719 rpsN Chlamydia trachomatis 434/Bu 30S ribosomal protein S14 YP_001654247.1 201647 D 471472 CDS YP_001654248.1 166154130 5858015 complement(201986..202486) 1 NC_010287.1 hypothetical protein 202486 5858015 CTL0156 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654248.1 201986 R 471472 CDS YP_001654249.1 166154131 5858761 complement(202608..202859) 1 NC_010287.1 putative integral membrane protein 202859 5858761 CTL0157 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654249.1 202608 R 471472 CDS YP_001654250.1 166154132 5858078 203139..203633 1 NC_010287.1 hypothetical protein 203633 5858078 CTL0158 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654250.1 203139 D 471472 CDS YP_001654251.1 166154133 5858792 complement(203679..205418) 1 NC_010287.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 205418 uvrC 5858792 uvrC Chlamydia trachomatis 434/Bu excinuclease ABC subunit C YP_001654251.1 203679 R 471472 CDS YP_001654252.1 166154134 5858799 complement(205500..207962) 1 NC_010287.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 207962 mutS 5858799 mutS Chlamydia trachomatis 434/Bu DNA mismatch repair protein MutS YP_001654252.1 205500 R 471472 CDS YP_001654253.1 166154135 5858602 208295..210082 1 NC_010287.1 synthesizes RNA primers at the replication forks; DNA primase 210082 dnaG 5858602 dnaG Chlamydia trachomatis 434/Bu DNA primase YP_001654253.1 208295 D 471472 CDS YP_001654254.1 166154136 5858691 210167..210454 1 NC_010287.1 hypothetical protein 210454 5858691 CTL0163 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654254.1 210167 D 471472 CDS YP_001654255.1 166154137 5858062 210580..211071 1 NC_010287.1 hypothetical protein 211071 5858062 CTL0164 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654255.1 210580 D 471472 CDS YP_001654256.1 166154138 5858783 complement(211154..214165) 1 NC_010287.1 glycyl-tRNA synthetase 214165 glyQ 5858783 glyQ Chlamydia trachomatis 434/Bu glycyl-tRNA synthetase YP_001654256.1 211154 R 471472 CDS YP_001654257.1 166154139 5858595 214619..215227 1 NC_010287.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 215227 pgsA 5858595 pgsA Chlamydia trachomatis 434/Bu CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001654257.1 214619 D 471472 CDS YP_001654258.1 166154140 5858439 complement(215234..216658) 1 NC_010287.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 216658 glgA 5858439 glgA Chlamydia trachomatis 434/Bu glycogen synthase YP_001654258.1 215234 R 471472 CDS YP_001654259.1 166154141 5858333 217235..217792 1 NC_010287.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 217792 rplY 5858333 rplY Chlamydia trachomatis 434/Bu 50S ribosomal protein L25/general stress protein Ctc YP_001654259.1 217235 D 471472 CDS YP_001654260.1 166154142 5858562 217800..218339 1 NC_010287.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 218339 pth 5858562 pth Chlamydia trachomatis 434/Bu peptidyl-tRNA hydrolase YP_001654260.1 217800 D 471472 CDS YP_001654261.1 166154143 5858725 218477..218815 1 NC_010287.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 218815 rpsF 5858725 rpsF Chlamydia trachomatis 434/Bu 30S ribosomal protein S6 YP_001654261.1 218477 D 471472 CDS YP_001654262.1 166154144 5858576 218832..219077 1 NC_010287.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 219077 rpsR 5858576 rpsR Chlamydia trachomatis 434/Bu 30S ribosomal protein S18 YP_001654262.1 218832 D 471472 CDS YP_001654263.1 166154145 5858189 219098..219601 1 NC_010287.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 219601 rplI 5858189 rplI Chlamydia trachomatis 434/Bu 50S ribosomal protein L9 YP_001654263.1 219098 D 471472 CDS YP_001654264.1 166154146 5858491 219665..220531 1 NC_010287.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 220531 ispE 5858491 ispE Chlamydia trachomatis 434/Bu 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001654264.1 219665 D 471472 CDS YP_001654265.1 166154147 5858047 complement(220834..222186) 1 NC_010287.1 putative integral membrane protein 222186 5858047 CTL0174 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654265.1 220834 R 471472 CDS YP_001654266.1 166154148 5858077 complement(222365..225235) 1 NC_010287.1 exported insulinase/protease 225235 ptr 5858077 ptr Chlamydia trachomatis 434/Bu exported insulinase/protease YP_001654266.1 222365 R 471472 CDS YP_001654267.1 166154149 5858745 complement(225287..226288) 1 NC_010287.1 glycerol-3-phosphate acyltransferase 226288 plsB 5858745 plsB Chlamydia trachomatis 434/Bu glycerol-3-phosphate acyltransferase YP_001654267.1 225287 R 471472 CDS YP_001654268.1 166154150 5857971 complement(226301..227839) 1 NC_010287.1 ribonuclease E 227839 cafE 5857971 cafE Chlamydia trachomatis 434/Bu ribonuclease E YP_001654268.1 226301 R 471472 CDS YP_001654269.1 166154151 5858471 228403..228723 1 NC_010287.1 hypothetical protein 228723 5858471 CTL0178 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654269.1 228403 D 471472 CDS YP_001654270.1 166154152 5857967 228663..228989 1 NC_010287.1 hypothetical protein 228989 5857967 CTL0179 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654270.1 228663 D 471472 CDS YP_001654271.1 166154153 5858747 228973..229152 1 NC_010287.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 229152 rpmF 5858747 rpmF Chlamydia trachomatis 434/Bu 50S ribosomal protein L32 YP_001654271.1 228973 D 471472 CDS YP_001654272.1 166154154 5858541 229174..230139 1 NC_010287.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 230139 plsX 5858541 plsX Chlamydia trachomatis 434/Bu putative glycerol-3-phosphate acyltransferase PlsX YP_001654272.1 229174 D 471472 CDS YP_001654273.1 166154155 5858550 230359..234951 1 NC_010287.1 polymorphic outer membrane protein 234951 pmpD 5858550 pmpD Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654273.1 230359 D 471472 CDS YP_001654274.1 166154156 5858795 235152..235946 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 235946 5858795 CTL0184 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654274.1 235152 D 471472 CDS YP_001654275.1 166154157 5858748 complement(236030..236329) 1 NC_010287.1 hypothetical protein 236329 5858748 CTL0185 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654275.1 236030 R 471472 CDS YP_001654276.1 166154158 5858112 complement(236350..236712) 1 NC_010287.1 hypothetical protein 236712 5858112 CTL0186 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654276.1 236350 R 471472 CDS YP_001654277.1 166154159 5858103 236957..238333 1 NC_010287.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 238333 glmM 5858103 glmM Chlamydia trachomatis 434/Bu phosphoglucosamine mutase YP_001654277.1 236957 D 471472 CDS YP_001654278.1 166154160 5858216 238344..240164 1 NC_010287.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 240164 glmS 5858216 glmS Chlamydia trachomatis 434/Bu glucosamine--fructose-6-phosphate aminotransferase YP_001654278.1 238344 D 471472 CDS YP_001654279.1 166154161 5858658 240267..241463 1 NC_010287.1 tyrosine-specific transport protein 241463 tyrP 5858658 tyrP Chlamydia trachomatis 434/Bu tyrosine-specific transport protein YP_001654279.1 240267 D 471472 CDS YP_001654280.1 166154162 5858800 241646..242839 1 NC_010287.1 tyrosine-specific transport protein 242839 5858800 CTL0190 Chlamydia trachomatis 434/Bu tyrosine-specific transport protein YP_001654280.1 241646 D 471472 CDS YP_001654281.1 166154163 5858712 242881..243597 1 NC_010287.1 putative membrane transport protein 243597 5858712 CTL0191 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654281.1 242881 D 471472 CDS YP_001654282.1 166154164 5857966 complement(243695..244549) 1 NC_010287.1 cell division protein 244549 ftsY 5857966 ftsY Chlamydia trachomatis 434/Bu cell division protein YP_001654282.1 243695 R 471472 CDS YP_001654283.1 166154165 5858038 244619..245779 1 NC_010287.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 245779 sucC 5858038 sucC Chlamydia trachomatis 434/Bu succinyl-CoA synthetase subunit beta YP_001654283.1 244619 D 471472 CDS YP_001654284.1 166154166 5858710 245794..246669 1 NC_010287.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 246669 sucD 5858710 sucD Chlamydia trachomatis 434/Bu succinyl-CoA synthetase subunit alpha YP_001654284.1 245794 D 471472 CDS YP_001654285.1 166154167 5858709 246808..248301 1 NC_010287.1 serine protease 248301 htrA 5858709 htrA Chlamydia trachomatis 434/Bu serine protease YP_001654285.1 246808 D 471472 CDS YP_001654286.1 166154168 5858677 248502..251426 1 NC_010287.1 metalloprotease-insulinase 251426 5858677 CTL0196 Chlamydia trachomatis 434/Bu metalloprotease-insulinase YP_001654286.1 248502 D 471472 CDS YP_001654287.1 166154169 5858145 complement(251440..252723) 1 NC_010287.1 DNA recombination protein 252723 rmuC 5858145 rmuC Chlamydia trachomatis 434/Bu DNA recombination protein YP_001654287.1 251440 R 471472 CDS YP_001654288.1 166154170 5858546 complement(252727..253518) 1 NC_010287.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 253518 pssA 5858546 pssA Chlamydia trachomatis 434/Bu CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001654288.1 252727 R 471472 CDS YP_001654289.1 166154171 5858185 254153..257296 1 NC_010287.1 catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 257296 nrdA 5858185 nrdA Chlamydia trachomatis 434/Bu ribonucleotide-diphosphate reductase subunit alpha YP_001654289.1 254153 D 471472 CDS YP_001654290.1 166154172 5858638 257334..258374 1 NC_010287.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 258374 nrdB 5858638 nrdB Chlamydia trachomatis 434/Bu ribonucleotide-diphosphate reductase subunit beta YP_001654290.1 257334 D 471472 CDS YP_001654291.1 166154173 5858665 258634..259308 1 NC_010287.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 259308 trmB 5858665 trmB Chlamydia trachomatis 434/Bu tRNA (guanine-N(7)-)-methyltransferase YP_001654291.1 258634 D 471472 CDS YP_001654292.1 166154174 5858258 259424..260008 1 NC_010287.1 putative SAM-dependent methyltransferase 260008 5858258 CTL0202 Chlamydia trachomatis 434/Bu putative SAM-dependent methyltransferase YP_001654292.1 259424 D 471472 CDS YP_001654293.1 166154175 5858048 complement(260005..260880) 1 NC_010287.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 260880 murB 5858048 murB Chlamydia trachomatis 434/Bu UDP-N-acetylenolpyruvoylglucosamine reductase YP_001654293.1 260005 R 471472 CDS YP_001654294.1 166154176 5858668 complement(261013..261519) 1 NC_010287.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 261519 nusB 5858668 nusB Chlamydia trachomatis 434/Bu transcription antitermination protein NusB YP_001654294.1 261013 R 471472 CDS YP_001654295.1 166154177 5858759 261951..262511 1 NC_010287.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 262511 infC 5858759 infC Chlamydia trachomatis 434/Bu translation initiation factor IF-3 YP_001654295.1 261951 D 471472 CDS YP_001654296.1 166154178 5858809 262498..262683 1 NC_010287.1 50S ribosomal protein L35 262683 rpmI 5858809 rpmI Chlamydia trachomatis 434/Bu 50S ribosomal protein L35 YP_001654296.1 262498 D 471472 CDS YP_001654297.1 166154179 5857943 262702..263073 1 NC_010287.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 263073 rplT 5857943 rplT Chlamydia trachomatis 434/Bu 50S ribosomal protein L20 YP_001654297.1 262702 D 471472 CDS YP_001654298.1 166154180 5858583 263080..264108 1 NC_010287.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 264108 pheS 5858583 pheS Chlamydia trachomatis 434/Bu phenylalanyl-tRNA synthetase subunit alpha YP_001654298.1 263080 D 471472 CDS YP_001654299.1 166154181 5858274 264419..266395 1 NC_010287.1 hypothetical protein 266395 5858274 CTL0209 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654299.1 264419 D 471472 CDS YP_001654300.1 166154182 5858347 complement(266392..267492) 1 NC_010287.1 putative membrane transport protein 267492 5858347 CTL0210 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654300.1 266392 R 471472 CDS YP_001654301.1 166154183 5857903 complement(267495..268559) 1 NC_010287.1 putative membrane transport protein 268559 5857903 CTL0211 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654301.1 267495 R 471472 CDS YP_001654302.1 166154184 5858379 268657..269622 1 NC_010287.1 tRNA(Ile)-lysidine synthase 269622 tilS 5858379 tilS Chlamydia trachomatis 434/Bu tRNA(Ile)-lysidine synthase YP_001654302.1 268657 D 471472 CDS YP_001654303.1 166154185 5858378 269783..272524 1 NC_010287.1 cell division protein 272524 ftsH 5858378 ftsH Chlamydia trachomatis 434/Bu cell division protein YP_001654303.1 269783 D 471472 CDS YP_001654304.1 166154186 5858659 complement(272739..274826) 1 NC_010287.1 polynucleotide phosphorylase/polyadenylase 274826 pnp 5858659 pnp Chlamydia trachomatis 434/Bu polynucleotide phosphorylase/polyadenylase YP_001654304.1 272739 R 471472 CDS YP_001654305.1 166154187 5858176 complement(274855..275124) 1 NC_010287.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 275124 rpsO 5858176 rpsO Chlamydia trachomatis 434/Bu 30S ribosomal protein S15 YP_001654305.1 274855 R 471472 CDS YP_001654306.1 166154188 5858676 275350..275841 1 NC_010287.1 cytosine deaminase 275841 5858676 CTL0216 Chlamydia trachomatis 434/Bu cytosine deaminase YP_001654306.1 275350 D 471472 CDS YP_001654307.1 166154189 5857905 275873..276091 1 NC_010287.1 hypothetical protein 276091 5857905 CTL0217 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654307.1 275873 D 471472 CDS YP_001654308.1 166154190 5858353 complement(276063..276767) 1 NC_010287.1 putative integral membrane protein 276767 5858353 CTL0218 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654308.1 276063 R 471472 CDS YP_001654309.1 166154191 5858389 complement(276902..277420) 1 NC_010287.1 hypothetical protein 277420 5858389 CTL0219 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654309.1 276902 R 471472 CDS YP_001654310.1 166154192 5858330 complement(277433..277939) 1 NC_010287.1 hypothetical protein 277939 5858330 CTL0220 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654310.1 277433 R 471472 CDS YP_001654311.1 166154193 5858358 complement(277967..278446) 1 NC_010287.1 hypothetical protein 278446 5858358 CTL0221 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654311.1 277967 R 471472 CDS YP_001654312.1 166154194 5858406 278763..278951 1 NC_010287.1 hypothetical protein 278951 5858406 CTL0222 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654312.1 278763 D 471472 CDS YP_001654313.1 166154195 5858227 278970..280187 1 NC_010287.1 putative integral membrane protein 280187 5858227 CTL0223 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654313.1 278970 D 471472 CDS YP_001654314.1 166154196 5858436 complement(280144..281019) 1 NC_010287.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 281019 map 5858436 map Chlamydia trachomatis 434/Bu methionine aminopeptidase YP_001654314.1 280144 R 471472 CDS YP_001654315.1 166154197 5858102 complement(281052..281693) 1 NC_010287.1 putative integral membrane protein 281693 5858102 CTL0225 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654315.1 281052 R 471472 CDS YP_001654316.1 166154198 5857990 complement(281710..282309) 1 NC_010287.1 putative integral membrane protein 282309 5857990 CTL0226 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654316.1 281710 R 471472 CDS YP_001654317.1 166154199 5858777 complement(282504..284273) 1 NC_010287.1 ABC transporter permease 284273 5858777 CTL0227 Chlamydia trachomatis 434/Bu ABC transporter permease YP_001654317.1 282504 R 471472 CDS YP_001654318.1 166154200 5858640 complement(285800..287503) 1 NC_010287.1 sulfate transporter 287503 5858640 CTL0231 Chlamydia trachomatis 434/Bu sulfate transporter YP_001654318.1 285800 R 471472 CDS YP_001654319.1 166154201 5858280 complement(287734..287895) 1 NC_010287.1 hypothetical protein 287895 5858280 CTL0231A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654319.1 287734 R 471472 CDS YP_001654320.1 166154202 5858584 complement(287935..288144) 1 NC_010287.1 hypothetical protein 288144 5858584 CTL0231B Chlamydia trachomatis 434/Bu hypothetical protein YP_001654320.1 287935 R 471472 CDS YP_001654321.1 166154203 5858727 288258..289523 1 NC_010287.1 putative membrane transport protein 289523 5858727 CTL0232 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654321.1 288258 D 471472 CDS YP_001654322.1 166154204 5858254 289633..291438 1 NC_010287.1 putative exported protease 291438 cpa 5858254 cpa Chlamydia trachomatis 434/Bu putative exported protease YP_001654322.1 289633 D 471472 CDS YP_001654323.1 166154205 5858681 291533..292456 1 NC_010287.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 292456 ispH 5858681 ispH Chlamydia trachomatis 434/Bu 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001654323.1 291533 D 471472 CDS YP_001654324.1 166154206 5858122 complement(292508..293989) 1 NC_010287.1 note that the product of this CDS has been proposed to be a putative type III secretion system translocator; hypothetical protein 293989 copD2 5858122 copD2 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654324.1 292508 R 471472 CDS YP_001654325.1 166154207 5858786 complement(294001..295521) 1 NC_010287.1 putative type III secretion translocator 295521 copB2 5858786 copB2 Chlamydia trachomatis 434/Bu putative type III secretion translocator YP_001654325.1 294001 R 471472 CDS YP_001654326.1 166154208 5858084 complement(295549..296145) 1 NC_010287.1 type III secretion chaperone 296145 lcrH 5858084 lcrH Chlamydia trachomatis 434/Bu type III secretion chaperone YP_001654326.1 295549 R 471472 CDS YP_001654327.1 166154209 5858707 complement(296067..297515) 1 NC_010287.1 hypothetical protein 297515 5858707 CTL0238 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654327.1 296067 R 471472 CDS YP_001654328.1 166154210 5858304 complement(298375..299277) 1 NC_010287.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 299277 xerD 5858304 xerD Chlamydia trachomatis 434/Bu site-specific tyrosine recombinase XerD YP_001654328.1 298375 R 471472 CDS YP_001654329.1 166154211 5858423 299525..300514 1 NC_010287.1 hypothetical protein 300514 5858423 CTL0244 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654329.1 299525 D 471472 CDS YP_001654330.1 166154212 5858667 300529..302745 1 NC_010287.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 302745 glgB 5858667 glgB Chlamydia trachomatis 434/Bu glycogen branching enzyme YP_001654330.1 300529 D 471472 CDS YP_001654331.1 166154213 5858618 complement(302756..303775) 1 NC_010287.1 hypothetical protein 303775 5858618 CTL0246 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654331.1 302756 R 471472 CDS YP_001654332.1 166154214 5858331 complement(303998..305203) 1 NC_010287.1 hypothetical protein 305203 5858331 CTL0247 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654332.1 303998 R 471472 CDS YP_001654333.1 166154215 5858005 complement(305380..308277) 1 NC_010287.1 polymorphic outer membrane protein 308277 pmpE 5858005 pmpE Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654333.1 305380 R 471472 CDS YP_001654334.1 166154216 5858444 complement(308280..311378) 1 NC_010287.1 polymorphic outer membrane protein 311378 pmpF 5858444 pmpF Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654334.1 308280 R 471472 CDS YP_001654335.1 166154217 5858730 311543..314581 1 NC_010287.1 polymorphic outer membrane protein 314581 pmpG 5858730 pmpG Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654335.1 311543 D 471472 CDS YP_001654336.1 166154218 5857975 314612..317632 1 NC_010287.1 polymorphic outer membrane protein 317632 pmpH 5857975 pmpH Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654336.1 314612 D 471472 CDS YP_001654337.1 166154219 5858675 318047..318643 1 NC_010287.1 hypothetical protein 318643 5858675 CTL0252 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654337.1 318047 D 471472 CDS YP_001654338.1 166154220 5858752 complement(318738..321374) 1 NC_010287.1 polymorphic outer membrane protein 321374 pmpI 5858752 pmpI Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654338.1 318738 R 471472 CDS YP_001654339.1 166154221 5858006 321649..323421 1 NC_010287.1 hypothetical protein 323421 5858006 CTL0255 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654339.1 321649 D 471472 CDS YP_001654340.1 166154222 5857946 complement(323566..323838) 1 NC_010287.1 hypothetical protein 323838 5857946 CTL0256 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654340.1 323566 R 471472 CDS YP_001654341.1 166154223 5858620 324039..324341 1 NC_010287.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 324341 gatC 5858620 gatC Chlamydia trachomatis 434/Bu aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001654341.1 324039 D 471472 CDS YP_001654342.1 166154224 5858470 324353..325828 1 NC_010287.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 325828 gatA 5858470 gatA Chlamydia trachomatis 434/Bu aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001654342.1 324353 D 471472 CDS YP_001654343.1 166154225 5858207 325830..327296 1 NC_010287.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 327296 gatB 5858207 gatB Chlamydia trachomatis 434/Bu aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001654343.1 325830 D 471472 CDS YP_001654344.1 166154226 5858200 complement(327395..328486) 1 NC_010287.1 hypothetical protein 328486 5858200 CTL0260 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654344.1 327395 R 471472 CDS YP_001654345.1 166154227 5858154 complement(328614..329183) 1 NC_010287.1 hypothetical protein 329183 5858154 CTL0261 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654345.1 328614 R 471472 CDS YP_001654346.1 166154228 5858743 329497..330447 1 NC_010287.1 hypothetical protein 330447 5858743 CTL0262 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654346.1 329497 D 471472 CDS YP_001654347.1 166154229 5858307 complement(330463..331365) 1 NC_010287.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 331365 rnhC 5858307 rnhC Chlamydia trachomatis 434/Bu ribonuclease HIII YP_001654347.1 330463 R 471472 CDS YP_001654348.1 166154230 5858713 331621..332052 1 NC_010287.1 hypothetical protein 332052 5858713 CTL0264 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654348.1 331621 D 471472 CDS YP_001654349.1 166154231 5858214 complement(332039..333406) 1 NC_010287.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 333406 htrB 5858214 htrB Chlamydia trachomatis 434/Bu lipid A biosynthesis lauroyl acyltransferase YP_001654349.1 332039 R 471472 CDS YP_001654350.1 166154232 5858081 complement(333538..334794) 1 NC_010287.1 hypothetical protein 334794 5858081 CTL0266 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654350.1 333538 R 471472 CDS YP_001654351.1 166154233 5858762 complement(334791..335585) 1 NC_010287.1 putative integral membrane protein 335585 5858762 CTL0267 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654351.1 334791 R 471472 CDS YP_001654352.1 166154234 5858138 335860..337200 1 NC_010287.1 cytochrome d ubiquinol oxidase subunit I 337200 cydA 5858138 cydA Chlamydia trachomatis 434/Bu cytochrome d ubiquinol oxidase subunit I YP_001654352.1 335860 D 471472 CDS YP_001654353.1 166154235 5858683 337212..338273 1 NC_010287.1 cytochrome d ubiquinol oxidase subunit II 338273 cydB 5858683 cydB Chlamydia trachomatis 434/Bu cytochrome d ubiquinol oxidase subunit II YP_001654353.1 337212 D 471472 CDS YP_001654354.1 166154236 5858202 complement(338371..339675) 1 NC_010287.1 hypothetical protein 339675 5858202 CTL0270 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654354.1 338371 R 471472 CDS YP_001654355.1 166154237 5858104 339884..340612 1 NC_010287.1 hypothetical protein 340612 5858104 CTL0271 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654355.1 339884 D 471472 CDS YP_001654356.1 166154238 5858213 340798..342099 1 NC_010287.1 hypothetical protein 342099 5858213 CTL0272 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654356.1 340798 D 471472 CDS YP_001654357.1 166154239 5858573 complement(342161..342634) 1 NC_010287.1 hypothetical protein 342634 5858573 CTL0273 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654357.1 342161 R 471472 CDS YP_001654358.1 166154240 5858570 343680..346790 1 NC_010287.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 346790 ileS 5858570 ileS Chlamydia trachomatis 434/Bu isoleucyl-tRNA synthetase YP_001654358.1 343680 D 471472 CDS YP_001654359.1 166154241 5858143 complement(346848..348734) 1 NC_010287.1 signal peptidase I 348734 lepB 5858143 lepB Chlamydia trachomatis 434/Bu signal peptidase I YP_001654359.1 346848 R 471472 CDS YP_001654360.1 166154242 5858781 complement(348920..349663) 1 NC_010287.1 hypothetical protein 349663 5858781 CTL0276 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654360.1 348920 R 471472 CDS YP_001654361.1 166154243 5858581 349739..350065 1 NC_010287.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 350065 rpmE2 5858581 rpmE2 Chlamydia trachomatis 434/Bu 50S ribosomal protein L31 type B YP_001654361.1 349739 D 471472 CDS YP_001654362.1 166154244 5858457 350253..351332 1 NC_010287.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 351332 prfA 5858457 prfA Chlamydia trachomatis 434/Bu peptide chain release factor 1 YP_001654362.1 350253 D 471472 CDS YP_001654363.1 166154245 5858726 351316..352188 1 NC_010287.1 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 352188 5858726 CTL0279 Chlamydia trachomatis 434/Bu N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001654363.1 351316 D 471472 CDS YP_001654364.1 166154246 5858426 352185..353531 1 NC_010287.1 signal recognition particle, subunit FFH/SRP54 353531 ffh 5858426 ffh Chlamydia trachomatis 434/Bu signal recognition particle, subunit FFH/SRP54 YP_001654364.1 352185 D 471472 CDS YP_001654365.1 166154247 5858789 353522..353872 1 NC_010287.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 353872 rpsP 5858789 rpsP Chlamydia trachomatis 434/Bu 30S ribosomal protein S16 YP_001654365.1 353522 D 471472 CDS YP_001654366.1 166154248 5858001 353888..354946 1 NC_010287.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein 354946 trmD 5858001 trmD Chlamydia trachomatis 434/Bu tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein YP_001654366.1 353888 D 471472 CDS YP_001654367.1 166154249 5858420 354972..355337 1 NC_010287.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 355337 rplS 5858420 rplS Chlamydia trachomatis 434/Bu 50S ribosomal protein L19 YP_001654367.1 354972 D 471472 CDS YP_001654368.1 166154250 5858544 355401..356054 1 NC_010287.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 356054 rnhB 5858544 rnhB Chlamydia trachomatis 434/Bu ribonuclease HII YP_001654368.1 355401 D 471472 CDS YP_001654369.1 166154251 5858565 356045..356662 1 NC_010287.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 356662 gmk 5858565 gmk Chlamydia trachomatis 434/Bu guanylate kinase YP_001654369.1 356045 D 471472 CDS YP_001654370.1 166154252 5858755 356655..356957 1 NC_010287.1 hypothetical protein 356957 5858755 CTL0286 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654370.1 356655 D 471472 CDS YP_001654371.1 166154253 5857972 356957..358609 1 NC_010287.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 358609 metG 5857972 metG Chlamydia trachomatis 434/Bu methionyl-tRNA synthetase YP_001654371.1 356957 D 471472 CDS YP_001654372.1 166154254 5858314 complement(358748..360988) 1 NC_010287.1 exodeoxyribonuclease V alpha chain 360988 recD 5858314 recD Chlamydia trachomatis 434/Bu exodeoxyribonuclease V alpha chain YP_001654372.1 358748 R 471472 CDS YP_001654373.1 166154255 5858003 complement(361236..362216) 1 NC_010287.1 putative membrane transport/efflux protein 362216 5858003 CTL0289 Chlamydia trachomatis 434/Bu putative membrane transport/efflux protein YP_001654373.1 361236 R 471472 CDS YP_001654374.1 166154256 5858066 362599..363372 1 NC_010287.1 putative protein ligase 363372 5858066 CTL0290 Chlamydia trachomatis 434/Bu putative protein ligase YP_001654374.1 362599 D 471472 CDS YP_001654375.1 166154257 5857974 complement(363337..364494) 1 NC_010287.1 hypothetical protein 364494 5857974 CTL0291 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654375.1 363337 R 471472 CDS YP_001654376.1 166154258 5858345 complement(365040..365384) 1 NC_010287.1 hypothetical protein 365384 5858345 CTL0293 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654376.1 365040 R 471472 CDS YP_001654377.1 166154259 5858212 complement(365406..365978) 1 NC_010287.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 365978 dcd 5858212 dcd Chlamydia trachomatis 434/Bu deoxycytidine triphosphate deaminase YP_001654377.1 365406 R 471472 CDS YP_001654378.1 166154260 5858206 366065..366217 1 NC_010287.1 hypothetical protein 366217 5858206 CTL0295 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654378.1 366065 D 471472 CDS YP_001654379.1 166154261 5858509 366259..367263 1 NC_010287.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 367263 ruvB 5858509 ruvB Chlamydia trachomatis 434/Bu Holliday junction DNA helicase RuvB YP_001654379.1 366259 D 471472 CDS YP_001654380.1 166154262 5858061 367265..368077 1 NC_010287.1 hypothetical protein 368077 5858061 CTL0297 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654380.1 367265 D 471472 CDS YP_001654381.1 166154263 5858637 complement(368138..370138) 1 NC_010287.1 putative glycosyl hydrolase 370138 5858637 CTL0298 Chlamydia trachomatis 434/Bu putative glycosyl hydrolase YP_001654381.1 368138 R 471472 CDS YP_001654382.1 166154264 5858729 complement(370259..370762) 1 NC_010287.1 putative type III secretion system chaperone 370762 5858729 CTL0299 Chlamydia trachomatis 434/Bu putative type III secretion system chaperone YP_001654382.1 370259 R 471472 CDS YP_001654383.1 166154265 5858567 371228..371701 1 NC_010287.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 371701 ssb 5858567 ssb Chlamydia trachomatis 434/Bu single-stranded DNA-binding protein YP_001654383.1 371228 D 471472 CDS YP_001654384.1 166154266 5858119 372044..373543 1 NC_010287.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 373543 5858119 CTL0301 Chlamydia trachomatis 434/Bu leucyl aminopeptidase YP_001654384.1 372044 D 471472 CDS YP_001654385.1 166154267 5858142 373681..374352 1 NC_010287.1 histone-like protein 2 374352 hct2 5858142 hct2 Chlamydia trachomatis 434/Bu histone-like protein 2 YP_001654385.1 373681 D 471472 CDS YP_001654386.1 166154268 5858004 374507..375451 1 NC_010287.1 hypothetical protein 375451 5858004 CTL0303 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654386.1 374507 D 471472 CDS YP_001654387.1 166154269 5857980 375546..376259 1 NC_010287.1 hypothetical protein 376259 5857980 CTL0304 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654387.1 375546 D 471472 CDS YP_001654388.1 166154270 5858116 376350..377822 1 NC_010287.1 hypothetical protein 377822 5858116 CTL0305 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654388.1 376350 D 471472 CDS YP_001654389.1 166154271 5858115 complement(377881..379548) 1 NC_010287.1 hypothetical protein 379548 5858115 CTL0306 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654389.1 377881 R 471472 CDS YP_001654390.1 166154272 5857941 complement(379584..381275) 1 NC_010287.1 hypothetical protein 381275 5857941 CTL0307 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654390.1 379584 R 471472 CDS YP_001654391.1 166154273 5857937 complement(381336..382466) 1 NC_010287.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 382466 hemN 5857937 hemN Chlamydia trachomatis 434/Bu coproporphyrinogen III oxidase YP_001654391.1 381336 R 471472 CDS YP_001654392.1 166154274 5858057 complement(382456..382902) 1 NC_010287.1 hypothetical protein 382902 5858057 CTL0309 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654392.1 382456 R 471472 CDS YP_001654393.1 166154275 5857947 383234..385945 1 NC_010287.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 385945 sucA 5857947 sucA Chlamydia trachomatis 434/Bu 2-oxoglutarate dehydrogenase E1 component YP_001654393.1 383234 D 471472 CDS YP_001654394.1 166154276 5858187 385949..387046 1 NC_010287.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 387046 sucB 5858187 sucB Chlamydia trachomatis 434/Bu dihydrolipoamide succinyltransferase YP_001654394.1 385949 D 471472 CDS YP_001654395.1 166154277 5858186 complement(387075..387806) 1 NC_010287.1 hypothetical protein 387806 5858186 CTL0312 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654395.1 387075 R 471472 CDS YP_001654396.1 166154278 5858498 complement(387815..389623) 1 NC_010287.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 389623 gcpE 5858498 gcpE Chlamydia trachomatis 434/Bu 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001654396.1 387815 R 471472 CDS YP_001654397.1 166154279 5858211 complement(389775..390866) 1 NC_010287.1 hypothetical protein 390866 5858211 CTL0314 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654397.1 389775 R 471472 CDS YP_001654398.1 166154280 5858022 complement(390946..391221) 1 NC_010287.1 ferredoxin 391221 fer 5858022 fer Chlamydia trachomatis 434/Bu ferredoxin YP_001654398.1 390946 R 471472 CDS YP_001654399.1 166154281 5858276 391403..393220 1 NC_010287.1 type III secretion system protein 393220 flhA 5858276 flhA Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654399.1 391403 D 471472 CDS YP_001654400.1 166154282 5858702 393328..394089 1 NC_010287.1 expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 394089 fliA 5858702 fliA Chlamydia trachomatis 434/Bu RNA polymerase sigma factor sigma-28 YP_001654400.1 393328 D 471472 CDS YP_001654401.1 166154283 5857979 394248..395486 1 NC_010287.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 395486 tyrS 5857979 tyrS Chlamydia trachomatis 434/Bu tyrosyl-tRNA synthetase YP_001654401.1 394248 D 471472 CDS YP_001654402.1 166154284 5858811 395496..396938 1 NC_010287.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 396938 gnd 5858811 gnd Chlamydia trachomatis 434/Bu 6-phosphogluconate dehydrogenase YP_001654402.1 395496 D 471472 CDS YP_001654403.1 166154285 5858447 complement(396999..398807) 1 NC_010287.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 398807 lepA 5858447 lepA Chlamydia trachomatis 434/Bu GTP-binding protein LepA YP_001654403.1 396999 R 471472 CDS YP_001654404.1 166154286 5857987 complement(398993..400579) 1 NC_010287.1 ADP,ATP carrier protein 400579 5857987 CTL0321 Chlamydia trachomatis 434/Bu ADP,ATP carrier protein YP_001654404.1 398993 R 471472 CDS YP_001654405.1 166154287 5858511 complement(400930..401406) 1 NC_010287.1 hypothetical protein 401406 5858511 CTL0322 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654405.1 400930 R 471472 CDS YP_001654406.1 166154288 5858524 402067..403047 1 NC_010287.1 ABC transport protein, solute binding component 403047 5858524 CTL0323 Chlamydia trachomatis 434/Bu ABC transport protein, solute binding component YP_001654406.1 402067 D 471472 CDS YP_001654407.1 166154289 5858528 403040..403819 1 NC_010287.1 ABC transport protein, ATP-binding component 403819 5858528 CTL0324 Chlamydia trachomatis 434/Bu ABC transport protein, ATP-binding component YP_001654407.1 403040 D 471472 CDS YP_001654408.1 166154290 5858526 403820..405175 1 NC_010287.1 ABC transport protein, membrane permease 405175 5858526 CTL0325 Chlamydia trachomatis 434/Bu ABC transport protein, membrane permease YP_001654408.1 403820 D 471472 CDS YP_001654409.1 166154291 5858525 405165..406121 1 NC_010287.1 ABC transport protein, membrane permease 406121 5858525 CTL0326 Chlamydia trachomatis 434/Bu ABC transport protein, membrane permease YP_001654409.1 405165 D 471472 CDS YP_001654410.1 166154292 5858512 406148..407287 1 NC_010287.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 407287 dxr 5858512 dxr Chlamydia trachomatis 434/Bu 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001654410.1 406148 D 471472 CDS YP_001654411.1 166154293 5858619 407483..409342 1 NC_010287.1 putative protease 409342 5858619 CTL0328 Chlamydia trachomatis 434/Bu putative protease YP_001654411.1 407483 D 471472 CDS YP_001654412.1 166154294 5858557 complement(409289..410266) 1 NC_010287.1 exported protein 410266 5858557 CTL0329 Chlamydia trachomatis 434/Bu exported protein YP_001654412.1 409289 R 471472 CDS YP_001654413.1 166154295 5858158 complement(410424..411521) 1 NC_010287.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 411521 recF 5858158 recF Chlamydia trachomatis 434/Bu recombination protein F YP_001654413.1 410424 R 471472 CDS YP_001654414.1 166154296 5858548 complement(411521..412771) 1 NC_010287.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 412771 dnaN 5858548 dnaN Chlamydia trachomatis 434/Bu DNA polymerase III subunit beta YP_001654414.1 411521 R 471472 CDS YP_001654415.1 166154297 5858205 412901..413356 1 NC_010287.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 413356 smpB 5858205 smpB Chlamydia trachomatis 434/Bu SsrA-binding protein YP_001654415.1 412901 D 471472 CDS YP_001654416.1 166154298 5858601 complement(413334..414284) 1 NC_010287.1 thiamine biosynthesis lipoprotein 414284 apbE 5858601 apbE Chlamydia trachomatis 434/Bu thiamine biosynthesis lipoprotein YP_001654416.1 413334 R 471472 CDS YP_001654417.1 166154299 5858626 complement(414254..415117) 1 NC_010287.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 415117 folD 5858626 folD Chlamydia trachomatis 434/Bu bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001654417.1 414254 R 471472 CDS YP_001654418.1 166154300 5858585 complement(415235..415630) 1 NC_010287.1 putative integral membrane protein 415630 5858585 CTL0335 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654418.1 415235 R 471472 CDS YP_001654419.1 166154301 5858108 415955..416248 1 NC_010287.1 late transcription unit B protein 416248 ltuB 5858108 ltuB Chlamydia trachomatis 434/Bu late transcription unit B protein YP_001654419.1 415955 D 471472 CDS YP_001654420.1 166154302 5858317 416281..416601 1 NC_010287.1 hypothetical protein 416601 5858317 CTL0337 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654420.1 416281 D 471472 CDS YP_001654421.1 166154303 5858549 416611..418293 1 NC_010287.1 hypothetical protein 418293 5858549 CTL0338 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654421.1 416611 D 471472 CDS YP_001654422.1 166154304 5858790 418290..418772 1 NC_010287.1 hypothetical protein 418772 5858790 CTL0338A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654422.1 418290 D 471472 CDS YP_001654423.1 166154305 5858797 complement(418786..419871) 1 NC_010287.1 phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein 419871 5858797 CTL0339 Chlamydia trachomatis 434/Bu phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein YP_001654423.1 418786 R 471472 CDS YP_001654424.1 166154306 5858556 complement(420042..421781) 1 NC_010287.1 putative decarboxylase 421781 5858556 CTL0340 Chlamydia trachomatis 434/Bu putative decarboxylase YP_001654424.1 420042 R 471472 CDS YP_001654425.1 166154307 5858052 complement(421901..422170) 1 NC_010287.1 required for 70S ribosome assembly; 50S ribosomal protein L28 422170 rpmB 5858052 rpmB Chlamydia trachomatis 434/Bu 50S ribosomal protein L28 YP_001654425.1 421901 R 471472 CDS YP_001654426.1 166154308 5858076 complement(422319..423902) 1 NC_010287.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 423902 malQ 5858076 malQ Chlamydia trachomatis 434/Bu 4-alpha-glucanotransferase YP_001654426.1 422319 R 471472 CDS YP_001654427.1 166154309 5858067 complement(423906..424346) 1 NC_010287.1 type III secretion chaperone 424346 scc1 5858067 scc1 Chlamydia trachomatis 434/Bu type III secretion chaperone YP_001654427.1 423906 R 471472 CDS YP_001654428.1 166154310 5858087 complement(424384..425649) 1 NC_010287.1 low calcium response protein E (TTSS effector protein) 425649 copN 5858087 copN Chlamydia trachomatis 434/Bu low calcium response protein E (TTSS effector protein) YP_001654428.1 424384 R 471472 CDS YP_001654429.1 166154311 5858608 complement(425667..427793) 1 NC_010287.1 low calcium response protein D ( to be part of the TTSS apparatus) 427793 lcrD 5858608 lcrD Chlamydia trachomatis 434/Bu low calcium response protein D ( to be part of the TTSS apparatus) YP_001654429.1 425667 R 471472 CDS YP_001654430.1 166154312 5858605 complement(427793..428875) 1 NC_010287.1 type III secretion system protein 428875 sctU 5858605 sctU Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654430.1 427793 R 471472 CDS YP_001654431.1 166154313 5858027 429132..430232 1 NC_010287.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 430232 5858027 CTL0347 Chlamydia trachomatis 434/Bu GTP-dependent nucleic acid-binding protein EngD YP_001654431.1 429132 D 471472 CDS YP_001654432.1 166154314 5858058 complement(430241..431146) 1 NC_010287.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 431146 ribF 5858058 ribF Chlamydia trachomatis 434/Bu bifunctional riboflavin kinase/FMN adenylyltransferase YP_001654432.1 430241 R 471472 CDS YP_001654433.1 166154315 5858161 complement(431103..431828) 1 NC_010287.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 431828 truB 5858161 truB Chlamydia trachomatis 434/Bu tRNA pseudouridine synthase B YP_001654433.1 431103 R 471472 CDS YP_001654434.1 166154316 5858822 complement(431866..432237) 1 NC_010287.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 432237 rbfA 5858822 rbfA Chlamydia trachomatis 434/Bu ribosome-binding factor A YP_001654434.1 431866 R 471472 CDS YP_001654435.1 166154317 5858152 complement(432244..434934) 1 NC_010287.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 434934 infB 5858152 infB Chlamydia trachomatis 434/Bu translation initiation factor IF-2 YP_001654435.1 432244 R 471472 CDS YP_001654436.1 166154318 5857991 complement(434891..436195) 1 NC_010287.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 436195 nusA 5857991 nusA Chlamydia trachomatis 434/Bu transcription elongation factor NusA YP_001654436.1 434891 R 471472 CDS YP_001654437.1 166154319 5858770 complement(436313..438022) 1 NC_010287.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 438022 rpsA 5858770 rpsA Chlamydia trachomatis 434/Bu 30S ribosomal protein S1 YP_001654437.1 436313 R 471472 CDS YP_001654438.1 166154320 5857977 438267..439322 1 NC_010287.1 thioredoxin reductase 439322 trxB 5857977 trxB Chlamydia trachomatis 434/Bu thioredoxin reductase YP_001654438.1 438267 D 471472 CDS YP_001654439.1 166154321 5858816 439328..439687 1 NC_010287.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 439687 acpS 5858816 acpS Chlamydia trachomatis 434/Bu 4'-phosphopantetheinyl transferase YP_001654439.1 439328 D 471472 CDS YP_001654440.1 166154322 5858616 complement(439688..440149) 1 NC_010287.1 hypothetical protein 440149 5858616 CTL0356 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654440.1 439688 R 471472 CDS YP_001654441.1 166154323 5858538 440285..440746 1 NC_010287.1 hypothetical protein 440746 5858538 CTL0357 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654441.1 440285 D 471472 CDS YP_001654442.1 166154324 5858587 440781..441677 1 NC_010287.1 Note the Pfam PF08282;haloacid dehalogenase-like hydrolase motif; hypothetical protein 441677 5858587 CTL0358 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654442.1 440781 D 471472 CDS YP_001654443.1 166154325 5858016 complement(441667..442563) 1 NC_010287.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 442563 fabI 5858016 fabI Chlamydia trachomatis 434/Bu enoyl-(acyl carrier protein) reductase YP_001654443.1 441667 R 471472 CDS YP_001654444.1 166154326 5858716 442875..444845 1 NC_010287.1 hypothetical protein 444845 5858716 CTL0360 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654444.1 442875 D 471472 CDS YP_001654445.1 166154327 5857948 complement(445045..445869) 1 NC_010287.1 tRNA pseudouridine synthase A 445869 5857948 CTL0361 Chlamydia trachomatis 434/Bu tRNA pseudouridine synthase A YP_001654445.1 445045 R 471472 CDS YP_001654446.1 166154328 5858135 445916..447022 1 NC_010287.1 putative DNA glycosylase 447022 5858135 CTL0362 Chlamydia trachomatis 434/Bu putative DNA glycosylase YP_001654446.1 445916 D 471472 CDS YP_001654447.1 166154329 5858014 447076..447831 1 NC_010287.1 Note the Pfam PF01784, NIF3 (NGG1p interacting factor 3); hypothetical protein 447831 5858014 CTL0363 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654447.1 447076 D 471472 CDS YP_001654448.1 166154330 5858527 complement(447844..448632) 1 NC_010287.1 hypothetical protein 448632 5858527 CTL0364 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654448.1 447844 R 471472 CDS YP_001654449.1 166154331 5858059 complement(448761..450395) 1 NC_010287.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 450395 groEL 5858059 groEL Chlamydia trachomatis 434/Bu chaperonin GroEL YP_001654449.1 448761 R 471472 CDS YP_001654450.1 166154332 5858801 complement(450434..450742) 1 NC_010287.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 450742 groES 5858801 groES Chlamydia trachomatis 434/Bu co-chaperonin GroES YP_001654450.1 450434 R 471472 CDS YP_001654451.1 166154333 5858746 complement(450914..452740) 1 NC_010287.1 oligoendopeptidase F 452740 pepF 5858746 pepF Chlamydia trachomatis 434/Bu oligoendopeptidase F YP_001654451.1 450914 R 471472 CDS YP_001654452.1 166154334 5858318 453042..455645 1 NC_010287.1 chaperone-protease ClpB 455645 clpB 5858318 clpB Chlamydia trachomatis 434/Bu chaperone-protease ClpB YP_001654452.1 453042 D 471472 CDS YP_001654453.1 166154335 5858663 455671..457131 1 NC_010287.1 hypothetical protein 457131 5858663 CTL0369 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654453.1 455671 D 471472 CDS YP_001654454.1 166154336 5858590 457317..457799 1 NC_010287.1 inclusion membrane protein D 457799 incD 5858590 incD Chlamydia trachomatis 434/Bu inclusion membrane protein D YP_001654454.1 457317 D 471472 CDS YP_001654455.1 166154337 5858183 457866..458264 1 NC_010287.1 inclusion membrane protein E 458264 incE 5858183 incE Chlamydia trachomatis 434/Bu inclusion membrane protein E YP_001654455.1 457866 D 471472 CDS YP_001654456.1 166154338 5858025 458269..458583 1 NC_010287.1 inclusion membrane protein F 458583 incF 5858025 incF Chlamydia trachomatis 434/Bu inclusion membrane protein F YP_001654456.1 458269 D 471472 CDS YP_001654457.1 166154339 5857996 458670..459173 1 NC_010287.1 inclusion membrane protein G 459173 incG 5857996 incG Chlamydia trachomatis 434/Bu inclusion membrane protein G YP_001654457.1 458670 D 471472 CDS YP_001654458.1 166154340 5858137 complement(459340..460080) 1 NC_010287.1 inclusion membrane protein A 460080 incA 5858137 incA Chlamydia trachomatis 434/Bu inclusion membrane protein A YP_001654458.1 459340 R 471472 CDS YP_001654459.1 166154341 5858165 complement(460207..460482) 1 NC_010287.1 hypothetical protein 460482 5858165 CTL0375 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654459.1 460207 R 471472 CDS YP_001654460.1 166154342 5858515 460581..461267 1 NC_010287.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 461267 araD 5858515 araD Chlamydia trachomatis 434/Bu ribulose-phosphate 3-epimerase YP_001654460.1 460581 D 471472 CDS YP_001654461.1 166154343 5858476 461254..461811 1 NC_010287.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 461811 efp 5858476 efp Chlamydia trachomatis 434/Bu elongation factor P YP_001654461.1 461254 D 471472 CDS YP_001654462.1 166154344 5858669 461824..462318 1 NC_010287.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 462318 accB 5858669 accB Chlamydia trachomatis 434/Bu acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001654462.1 461824 D 471472 CDS YP_001654463.1 166154345 5858489 462322..463695 1 NC_010287.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 463695 accC 5858489 accC Chlamydia trachomatis 434/Bu acetyl-CoA carboxylase biotin carboxylase subunit YP_001654463.1 462322 D 471472 CDS YP_001654464.1 166154346 5858611 463918..464370 1 NC_010287.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 464370 rplM 5858611 rplM Chlamydia trachomatis 434/Bu 50S ribosomal protein L13 YP_001654464.1 463918 D 471472 CDS YP_001654465.1 166154347 5858125 464396..464785 1 NC_010287.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 464785 rpsI 5858125 rpsI Chlamydia trachomatis 434/Bu 30S ribosomal protein S9 YP_001654465.1 464396 D 471472 CDS YP_001654466.1 166154348 5858011 complement(464833..465684) 1 NC_010287.1 chitinase 465684 5858011 CTL0382 Chlamydia trachomatis 434/Bu chitinase YP_001654466.1 464833 R 471472 CDS YP_001654467.1 166154349 5858151 complement(465780..466517) 1 NC_010287.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 466517 adk 5858151 adk Chlamydia trachomatis 434/Bu adenylate kinase YP_001654467.1 465780 R 471472 CDS YP_001654468.1 166154350 5858477 466724..467368 1 NC_010287.1 putative ABC-membrane transport protein, inner membrane component 467368 5858477 CTL0384 Chlamydia trachomatis 434/Bu putative ABC-membrane transport protein, inner membrane component YP_001654468.1 466724 D 471472 CDS YP_001654469.1 166154351 5858184 467365..468066 1 NC_010287.1 ABC transporter, ATP-binding component 468066 5858184 CTL0385 Chlamydia trachomatis 434/Bu ABC transporter, ATP-binding component YP_001654469.1 467365 D 471472 CDS YP_001654470.1 166154352 5858539 complement(468069..471485) 1 NC_010287.1 hypothetical protein 471485 5858539 CTL0386 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654470.1 468069 R 471472 CDS YP_001654471.1 166154353 5858506 complement(471482..472759) 1 NC_010287.1 Note the Pfam PF03631;Ribonuclease BN-like family; hypothetical protein 472759 5858506 CTL0387 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654471.1 471482 R 471472 CDS YP_001654472.1 166154354 5858559 complement(472838..473641) 1 NC_010287.1 putative methyltransferase 473641 5858559 CTL0388 Chlamydia trachomatis 434/Bu putative methyltransferase YP_001654472.1 472838 R 471472 CDS YP_001654473.1 166154355 5858533 474097..474510 1 NC_010287.1 hypothetical protein 474510 5858533 CTL0389 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654473.1 474097 D 471472 CDS YP_001654474.1 166154356 5858497 474568..475650 1 NC_010287.1 hypothetical protein 475650 5858497 CTL0390 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654474.1 474568 D 471472 CDS YP_001654475.1 166154357 5858150 475740..476459 1 NC_010287.1 members of this family of proteins have a broad spectrum of activity; putative phospholipase-carboxylesterase family protein 476459 5858150 CTL0391 Chlamydia trachomatis 434/Bu putative phospholipase-carboxylesterase family protein YP_001654475.1 475740 D 471472 CDS YP_001654476.1 166154358 5858536 476478..477323 1 NC_010287.1 note the PFAM motif to yrdC domain PF01300; hypothetical protein 477323 5858536 CTL0392 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654476.1 476478 D 471472 CDS YP_001654477.1 166154359 5858129 477301..478248 1 NC_010287.1 microsomal dipeptidase 478248 5858129 CTL0393 Chlamydia trachomatis 434/Bu microsomal dipeptidase YP_001654477.1 477301 D 471472 CDS YP_001654478.1 166154360 5858522 complement(478245..479525) 1 NC_010287.1 oligopeptide transport system binding protein 479525 oppA 5858522 oppA Chlamydia trachomatis 434/Bu oligopeptide transport system binding protein YP_001654478.1 478245 R 471472 CDS YP_001654479.1 166154361 5858553 479701..480387 1 NC_010287.1 exported protein 480387 5858553 CTL0395 Chlamydia trachomatis 434/Bu exported protein YP_001654479.1 479701 D 471472 CDS YP_001654480.1 166154362 5858435 480571..481017 1 NC_010287.1 protein translocase 481017 5858435 CTL0396 Chlamydia trachomatis 434/Bu protein translocase YP_001654480.1 480571 D 471472 CDS YP_001654481.1 166154363 5858260 481417..482274 1 NC_010287.1 hypothetical protein 482274 5858260 CTL0397 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654481.1 481417 D 471472 CDS YP_001654482.1 166154364 5858718 482276..483118 1 NC_010287.1 hypothetical protein 483118 5858718 CTL0398 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654482.1 482276 D 471472 CDS YP_001654483.1 166154365 5858109 483118..483984 1 NC_010287.1 hypothetical protein 483984 5858109 CTL0399 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654483.1 483118 D 471472 CDS YP_001654484.1 166154366 5858117 484170..486014 1 NC_010287.1 serine-threonine-protein kinase 486014 pkn1 5858117 pkn1 Chlamydia trachomatis 434/Bu serine-threonine-protein kinase YP_001654484.1 484170 D 471472 CDS YP_001654485.1 166154367 5857985 486025..488016 1 NC_010287.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 488016 ligA 5857985 ligA Chlamydia trachomatis 434/Bu NAD-dependent DNA ligase LigA YP_001654485.1 486025 D 471472 CDS YP_001654486.1 166154368 5858451 488114..492463 1 NC_010287.1 putative integral membrane protein 492463 5858451 CTL0402 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654486.1 488114 D 471472 CDS YP_001654487.1 166154369 5858785 complement(492526..494049) 1 NC_010287.1 FAD-dependent monooxygenase 494049 mhpA 5858785 mhpA Chlamydia trachomatis 434/Bu FAD-dependent monooxygenase YP_001654487.1 492526 R 471472 CDS YP_001654488.1 166154370 5858574 complement(494249..495196) 1 NC_010287.1 hypothetical protein 495196 5858574 CTL0404 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654488.1 494249 R 471472 CDS YP_001654489.1 166154371 5858561 495595..495753 1 NC_010287.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 495753 rpmG 5858561 rpmG Chlamydia trachomatis 434/Bu 50S ribosomal protein L33 YP_001654489.1 495595 D 471472 CDS YP_001654490.1 166154372 5858540 495789..497300 1 NC_010287.1 lipoprotein releasing systen, inner membrane component 497300 5858540 CTL0406 Chlamydia trachomatis 434/Bu lipoprotein releasing systen, inner membrane component YP_001654490.1 495789 D 471472 CDS YP_001654491.1 166154373 5858537 497305..497982 1 NC_010287.1 lipoprotein release ATP-binding component 497982 5858537 CTL0407 Chlamydia trachomatis 434/Bu lipoprotein release ATP-binding component YP_001654491.1 497305 D 471472 CDS YP_001654492.1 166154374 5857993 complement(498133..500565) 1 NC_010287.1 MAC/perforin family protein 500565 5857993 CTL0408 Chlamydia trachomatis 434/Bu MAC/perforin family protein YP_001654492.1 498133 R 471472 CDS YP_001654493.1 166154375 5858073 complement(502302..503240) 1 NC_010287.1 phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein 503240 5858073 CTL0411 Chlamydia trachomatis 434/Bu phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein YP_001654493.1 502302 R 471472 CDS YP_001654494.1 166154376 5858175 complement(503754..504959) 1 NC_010287.1 phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein 504959 5858175 CTL0413 Chlamydia trachomatis 434/Bu phosphatidylcholine-hydrolyzing phospholipase D (PLD) protein YP_001654494.1 503754 R 471472 CDS YP_001654495.1 166154377 5858771 complement(507306..508052) 1 NC_010287.1 hypothetical protein 508052 5858771 CTL0417 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654495.1 507306 R 471472 CDS YP_001654496.1 166154378 5858182 508663..510192 1 NC_010287.1 Note the motifs for calcium binding and calmodulin-binding domain.; hypothetical protein 510192 5858182 CTL0419 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654496.1 508663 D 471472 CDS YP_001654497.1 166154379 5858017 510245..510505 1 NC_010287.1 hypothetical protein 510505 5858017 CTL0419A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654497.1 510245 D 471472 CDS YP_001654498.1 166154380 5858190 511407..511691 1 NC_010287.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 511691 trpR 5858190 trpR Chlamydia trachomatis 434/Bu Trp operon repressor YP_001654498.1 511407 D 471472 CDS YP_001654499.1 166154381 5858806 512040..513218 1 NC_010287.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 513218 trpB 5858806 trpB Chlamydia trachomatis 434/Bu tryptophan synthase subunit beta YP_001654499.1 512040 D 471472 CDS YP_001654500.1 166154382 5858808 513211..513972 1 NC_010287.1 tryptophan synthase subunit alpha 513972 trpA 5858808 trpA Chlamydia trachomatis 434/Bu tryptophan synthase subunit alpha YP_001654500.1 513211 D 471472 CDS YP_001654501.1 166154383 5858813 complement(514163..514684) 1 NC_010287.1 hypothetical protein 514684 5858813 CTL0425 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654501.1 514163 R 471472 CDS YP_001654502.1 166154384 5858700 complement(514761..514916) 1 NC_010287.1 hypothetical protein 514916 5858700 CTL0426 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654502.1 514761 R 471472 CDS YP_001654503.1 166154385 5858503 515293..516882 1 NC_010287.1 oligopeptide transport system binding protein 516882 oppA2 5858503 oppA2 Chlamydia trachomatis 434/Bu oligopeptide transport system binding protein YP_001654503.1 515293 D 471472 CDS YP_001654504.1 166154386 5858535 complement(516909..517316) 1 NC_010287.1 putative disulfide oxidoreductase 517316 dsbB 5858535 dsbB Chlamydia trachomatis 434/Bu putative disulfide oxidoreductase YP_001654504.1 516909 R 471472 CDS YP_001654505.1 166154387 5858475 complement(517313..518029) 1 NC_010287.1 Note the alternate possible translational start site at codon 27.; disulfide bond chaperone 518029 dsbG 5858475 dsbG Chlamydia trachomatis 434/Bu disulfide bond chaperone YP_001654505.1 517313 R 471472 CDS YP_001654506.1 166154388 5858655 518175..519389 1 NC_010287.1 putative integral membrane protein 519389 5858655 CTL0430 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654506.1 518175 D 471472 CDS YP_001654507.1 166154389 5858456 complement(519391..519903) 1 NC_010287.1 hypothetical protein 519903 5858456 CTL0431 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654507.1 519391 R 471472 CDS YP_001654508.1 166154390 5858552 complement(520047..520739) 1 NC_010287.1 ABC transporter, ATP-binding protein 520739 5858552 CTL0432 Chlamydia trachomatis 434/Bu ABC transporter, ATP-binding protein YP_001654508.1 520047 R 471472 CDS YP_001654509.1 166154391 5857927 complement(521047..521757) 1 NC_010287.1 hypothetical protein 521757 5857927 CTL0433 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654509.1 521047 R 471472 CDS YP_001654510.1 166154392 5858046 522125..522889 1 NC_010287.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 522889 kdsB 5858046 kdsB Chlamydia trachomatis 434/Bu 3-deoxy-manno-octulosonate cytidylyltransferase YP_001654510.1 522125 D 471472 CDS YP_001654511.1 166154393 5858425 522865..524484 1 NC_010287.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 524484 pyrG 5858425 pyrG Chlamydia trachomatis 434/Bu CTP synthetase YP_001654511.1 522865 D 471472 CDS YP_001654512.1 166154394 5858009 524471..524917 1 NC_010287.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 524917 5858009 CTL0436 Chlamydia trachomatis 434/Bu Holliday junction resolvase-like protein YP_001654512.1 524471 D 471472 CDS YP_001654513.1 166154395 5858195 525034..526557 1 NC_010287.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 526557 zwf 5858195 zwf Chlamydia trachomatis 434/Bu glucose-6-phosphate 1-dehydrogenase YP_001654513.1 525034 D 471472 CDS YP_001654514.1 166154396 5857940 526582..527352 1 NC_010287.1 6-phosphogluconolactonase 527352 devB 5857940 devB Chlamydia trachomatis 434/Bu 6-phosphogluconolactonase YP_001654514.1 526582 D 471472 CDS YP_001654515.1 166154397 5858210 complement(527349..528221) 1 NC_010287.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 528221 dnaX 5858210 dnaX Chlamydia trachomatis 434/Bu DNA polymerase III subunit delta' YP_001654515.1 527349 R 471472 CDS YP_001654516.1 166154398 5858199 complement(528235..528846) 1 NC_010287.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 528846 tmk 5858199 tmk Chlamydia trachomatis 434/Bu thymidylate kinase YP_001654516.1 528235 R 471472 CDS YP_001654517.1 166154399 5858742 complement(528848..531358) 1 NC_010287.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 531358 gyrA 5858742 gyrA Chlamydia trachomatis 434/Bu DNA gyrase subunit A YP_001654517.1 528848 R 471472 CDS YP_001654518.1 166154400 5858149 complement(531373..533787) 1 NC_010287.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 533787 gyrB 5858149 gyrB Chlamydia trachomatis 434/Bu DNA gyrase subunit B YP_001654518.1 531373 R 471472 CDS YP_001654519.1 166154401 5858172 complement(533790..534140) 1 NC_010287.1 hypothetical protein 534140 5858172 CTL0443 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654519.1 533790 R 471472 CDS YP_001654520.1 166154402 5858508 complement(534287..534982) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 534982 5858508 CTL0444 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654520.1 534287 R 471472 CDS YP_001654521.1 166154403 5858126 complement(535086..536204) 1 NC_010287.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 536204 tgt 5858126 tgt Chlamydia trachomatis 434/Bu queuine tRNA-ribosyltransferase YP_001654521.1 535086 R 471472 CDS YP_001654522.1 166154404 5858404 complement(536331..537743) 1 NC_010287.1 magnesium transport protein 537743 mgtE 5858404 mgtE Chlamydia trachomatis 434/Bu magnesium transport protein YP_001654522.1 536331 R 471472 CDS YP_001654523.1 166154405 5858198 complement(538183..539274) 1 NC_010287.1 putative integral membrane protein 539274 5858198 CTL0447 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654523.1 538183 R 471472 CDS YP_001654524.1 166154406 5858114 539500..539820 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 539820 5858114 CTL0448 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654524.1 539500 D 471472 CDS YP_001654525.1 166154407 5858728 539896..540912 1 NC_010287.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 540912 gcp 5858728 gcp Chlamydia trachomatis 434/Bu putative DNA-binding/iron metalloprotein/AP endonuclease YP_001654525.1 539896 D 471472 CDS YP_001654526.1 166154408 5858204 540876..542432 1 NC_010287.1 oligopeptide transport system binding protein 542432 oppA3 5858204 oppA3 Chlamydia trachomatis 434/Bu oligopeptide transport system binding protein YP_001654526.1 540876 D 471472 CDS YP_001654527.1 166154409 5858443 542591..543532 1 NC_010287.1 oligopeptide transport system membrane permease 543532 oppB 5858443 oppB Chlamydia trachomatis 434/Bu oligopeptide transport system membrane permease YP_001654527.1 542591 D 471472 CDS YP_001654528.1 166154410 5858551 543564..544409 1 NC_010287.1 oligopeptide transport system membrane permease 544409 oppC 5858551 oppC Chlamydia trachomatis 434/Bu oligopeptide transport system membrane permease YP_001654528.1 543564 D 471472 CDS YP_001654529.1 166154411 5858428 544402..545235 1 NC_010287.1 oligopeptide transport system ATP-binding protein 545235 oppD 5858428 oppD Chlamydia trachomatis 434/Bu oligopeptide transport system ATP-binding protein YP_001654529.1 544402 D 471472 CDS YP_001654530.1 166154412 5858429 545250..545993 1 NC_010287.1 oligopeptide transport system ATP-binding protein 545993 oppF 5858429 oppF Chlamydia trachomatis 434/Bu oligopeptide transport system ATP-binding protein YP_001654530.1 545250 D 471472 CDS YP_001654531.1 166154413 5858072 546305..547054 1 NC_010287.1 hypothetical protein 547054 5858072 CTL0455 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654531.1 546305 D 471472 CDS YP_001654532.1 166154414 5858127 547084..548499 1 NC_010287.1 sodium:sulfate symporter 548499 5858127 CTL0456 Chlamydia trachomatis 434/Bu sodium:sulfate symporter YP_001654532.1 547084 D 471472 CDS YP_001654533.1 166154415 5858523 548519..550180 1 NC_010287.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 550180 pfkA 5858523 pfkA Chlamydia trachomatis 434/Bu diphosphate--fructose-6-phosphate 1-phosphotransferase YP_001654533.1 548519 D 471472 CDS YP_001654534.1 166154416 5858657 550189..551037 1 NC_010287.1 hypothetical protein 551037 5858657 CTL0458 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654534.1 550189 D 471472 CDS YP_001654535.1 166154417 5858705 551019..552665 1 NC_010287.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 552665 pfkA_2 5858705 pfkA_2 Chlamydia trachomatis 434/Bu diphosphate--fructose-6-phosphate 1-phosphotransferase YP_001654535.1 551019 D 471472 CDS YP_001654536.1 166154418 5858288 complement(552911..554206) 1 NC_010287.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 554206 gseA 5858288 gseA Chlamydia trachomatis 434/Bu 3-deoxy-D-manno-octulosonic-acid transferase YP_001654536.1 552911 R 471472 CDS YP_001654537.1 166154419 5858499 complement(554203..556662) 1 NC_010287.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 556662 leuS 5858499 leuS Chlamydia trachomatis 434/Bu leucyl-tRNA synthetase YP_001654537.1 554203 R 471472 CDS YP_001654538.1 166154420 5858804 556859..558127 1 NC_010287.1 catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 558127 hemL 5858804 hemL Chlamydia trachomatis 434/Bu glutamate-1-semialdehyde aminotransferase YP_001654538.1 556859 D 471472 CDS YP_001654539.1 166154421 5858810 complement(558119..558688) 1 NC_010287.1 hypothetical protein 558688 5858810 CTL0463 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654539.1 558119 R 471472 CDS YP_001654540.1 166154422 5858168 complement(558708..559154) 1 NC_010287.1 hypothetical protein 559154 5858168 CTL0464 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654540.1 558708 R 471472 CDS YP_001654541.1 166154423 5858696 complement(559144..559872) 1 NC_010287.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 559872 rpiA 5858696 rpiA Chlamydia trachomatis 434/Bu ribose-5-phosphate isomerase A YP_001654541.1 559144 R 471472 CDS YP_001654542.1 166154424 5858153 complement(559967..561610) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 561610 5858153 CTL0466 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654542.1 559967 R 471472 CDS YP_001654543.1 166154425 5858146 561914..562960 1 NC_010287.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 562960 dhnA 5858146 dhnA Chlamydia trachomatis 434/Bu fructose-bisphosphate aldolase YP_001654543.1 561914 D 471472 CDS YP_001654544.1 166154426 5858680 562974..564374 1 NC_010287.1 glutamate/gamma-aminobutyrate antiporter 564374 xasA 5858680 xasA Chlamydia trachomatis 434/Bu glutamate/gamma-aminobutyrate antiporter YP_001654544.1 562974 D 471472 CDS YP_001654545.1 166154427 5858815 564468..565232 1 NC_010287.1 hypothetical protein 565232 5858815 CTL0469 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654545.1 564468 D 471472 CDS YP_001654546.1 166154428 5858766 565363..566214 1 NC_010287.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 566214 surE 5858766 surE Chlamydia trachomatis 434/Bu stationary phase survival protein SurE YP_001654546.1 565363 D 471472 CDS YP_001654547.1 166154429 5858327 566326..567234 1 NC_010287.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 567234 ubiA 5858327 ubiA Chlamydia trachomatis 434/Bu prenyltransferase YP_001654547.1 566326 D 471472 CDS YP_001654548.1 166154430 5858821 567231..567809 1 NC_010287.1 aromatic acid decarboxylase 567809 5858821 CTL0472 Chlamydia trachomatis 434/Bu aromatic acid decarboxylase YP_001654548.1 567231 D 471472 CDS YP_001654549.1 166154431 5858144 complement(567806..568702) 1 NC_010287.1 hypothetical protein 568702 5858144 CTL0473 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654549.1 567806 R 471472 CDS YP_001654550.1 166154432 5858820 complement(568992..569132) 1 NC_010287.1 hypothetical protein 569132 5858820 CTL0474 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654550.1 568992 R 471472 CDS YP_001654551.1 166154433 5858542 complement(569159..569545) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 569545 5858542 CTL0475 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654551.1 569159 R 471472 CDS YP_001654552.1 166154434 5858723 complement(569687..570493) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 570493 5858723 CTL0476 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654552.1 569687 R 471472 CDS YP_001654553.1 166154435 5858164 complement(570885..571328) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 571328 5858164 CTL0477 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654553.1 570885 R 471472 CDS YP_001654554.1 166154436 5857945 complement(571436..571804) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 571804 5857945 CTL0477A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654554.1 571436 R 471472 CDS YP_001654555.1 166154437 5858000 complement(571903..572418) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 572418 5858000 CTL0478 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654555.1 571903 R 471472 CDS YP_001654556.1 166154438 5858589 complement(572547..572948) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 572948 5858589 CTL0479 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654556.1 572547 R 471472 CDS YP_001654557.1 166154439 5858580 complement(573229..573819) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 573819 5858580 CTL0480 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654557.1 573229 R 471472 CDS YP_001654558.1 166154440 5858598 complement(573969..574616) 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 574616 5858598 CTL0481 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654558.1 573969 R 471472 CDS YP_001654559.1 166154441 5858518 574842..576089 1 NC_010287.1 putative sodium:dicarboxylate symport protein 576089 5858518 CTL0482 Chlamydia trachomatis 434/Bu putative sodium:dicarboxylate symport protein YP_001654559.1 574842 D 471472 CDS YP_001654560.1 166154442 5858493 576273..577745 1 NC_010287.1 sodium-dependent amino acid transporter 577745 5858493 CTL0483 Chlamydia trachomatis 434/Bu sodium-dependent amino acid transporter YP_001654560.1 576273 D 471472 CDS YP_001654561.1 166154443 5858593 577850..578197 1 NC_010287.1 inclusion membrane protein B 578197 incB 5858593 incB Chlamydia trachomatis 434/Bu inclusion membrane protein B YP_001654561.1 577850 D 471472 CDS YP_001654562.1 166154444 5858169 578274..578810 1 NC_010287.1 inclusion membrane protein C 578810 incC 5858169 incC Chlamydia trachomatis 434/Bu inclusion membrane protein C YP_001654562.1 578274 D 471472 CDS YP_001654563.1 166154445 5858147 578868..581654 1 NC_010287.1 putative membrane transport protein 581654 5858147 CTL0486 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654563.1 578868 D 471472 CDS YP_001654564.1 166154446 5858180 581683..582096 1 NC_010287.1 Crp family transcriptional regulator 582096 5858180 CTL0487 Chlamydia trachomatis 434/Bu Crp family transcriptional regulator YP_001654564.1 581683 D 471472 CDS YP_001654565.1 166154447 5858080 complement(582157..582390) 1 NC_010287.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 582390 acpP 5858080 acpP Chlamydia trachomatis 434/Bu acyl carrier protein YP_001654565.1 582157 R 471472 CDS YP_001654566.1 166154448 5858646 complement(582759..583505) 1 NC_010287.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 583505 fabG 5858646 fabG Chlamydia trachomatis 434/Bu 3-ketoacyl-(acyl-carrier-protein) reductase YP_001654566.1 582759 R 471472 CDS YP_001654567.1 166154449 5858671 complement(583502..584428) 1 NC_010287.1 malonyl-CoA-[acyl-carrier-protein] transacylase 584428 fabD 5858671 fabD Chlamydia trachomatis 434/Bu malonyl-CoA-[acyl-carrier-protein] transacylase YP_001654567.1 583502 R 471472 CDS YP_001654568.1 166154450 5857957 complement(584445..585428) 1 NC_010287.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 585428 fabH 5857957 fabH Chlamydia trachomatis 434/Bu 3-oxoacyl-(acyl carrier protein) synthase III YP_001654568.1 584445 R 471472 CDS YP_001654569.1 166154451 5857953 585566..586168 1 NC_010287.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 586168 recR 5857953 recR Chlamydia trachomatis 434/Bu recombination protein RecR YP_001654569.1 585566 D 471472 CDS YP_001654570.1 166154452 5858510 586542..588920 1 NC_010287.1 outer membrane protein (variable surface antigen) 588920 5858510 CTL0493 Chlamydia trachomatis 434/Bu outer membrane protein (variable surface antigen) YP_001654570.1 586542 D 471472 CDS YP_001654571.1 166154453 5858513 588987..589508 1 NC_010287.1 Outer membrane protein 589508 ompH 5858513 ompH Chlamydia trachomatis 434/Bu Outer membrane protein YP_001654571.1 588987 D 471472 CDS YP_001654572.1 166154454 5858495 589536..590600 1 NC_010287.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 590600 lpxD 5858495 lpxD Chlamydia trachomatis 434/Bu UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001654572.1 589536 D 471472 CDS YP_001654573.1 166154455 5858758 complement(590597..591793) 1 NC_010287.1 hypothetical protein 591793 5858758 CTL0496 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654573.1 590597 R 471472 CDS YP_001654574.1 166154456 5858040 592015..593037 1 NC_010287.1 pyruvate dehydrogenase E1 component alpha subunit 593037 pdhA 5858040 pdhA Chlamydia trachomatis 434/Bu pyruvate dehydrogenase E1 component alpha subunit YP_001654574.1 592015 D 471472 CDS YP_001654575.1 166154457 5858662 593030..594016 1 NC_010287.1 pyruvate dehydrogenase E1 component beta subunit 594016 pdhB 5858662 pdhB Chlamydia trachomatis 434/Bu pyruvate dehydrogenase E1 component beta subunit YP_001654575.1 593030 D 471472 CDS YP_001654576.1 166154458 5858441 594021..595310 1 NC_010287.1 branched-chain alpha-keto acid dehydrogenase subunit E2 595310 pdhC 5858441 pdhC Chlamydia trachomatis 434/Bu branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001654576.1 594021 D 471472 CDS YP_001654577.1 166154459 5858737 complement(595337..597781) 1 NC_010287.1 glycogen phosphorylase 597781 glgP 5858737 glgP Chlamydia trachomatis 434/Bu glycogen phosphorylase YP_001654577.1 595337 R 471472 CDS YP_001654578.1 166154460 5858684 597937..598287 1 NC_010287.1 hypothetical protein 598287 5858684 CTL0500A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654578.1 597937 D 471472 CDS YP_001654579.1 166154461 5858599 complement(598341..599711) 1 NC_010287.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 599711 dnaA 5858599 dnaA Chlamydia trachomatis 434/Bu chromosomal replication initiation protein YP_001654579.1 598341 R 471472 CDS YP_001654580.1 166154462 5858197 complement(599788..602151) 1 NC_010287.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 602151 oxaA 5858197 oxaA Chlamydia trachomatis 434/Bu putative inner membrane protein translocase component YidC YP_001654580.1 599788 R 471472 CDS YP_001654581.1 166154463 5858446 complement(602461..603279) 1 NC_010287.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 603279 lgt 5858446 lgt Chlamydia trachomatis 434/Bu prolipoprotein diacylglyceryl transferase YP_001654581.1 602461 R 471472 CDS YP_001654582.1 166154464 5858316 603530..604177 1 NC_010287.1 putative lipoprotein 604177 5858316 CTL0505 Chlamydia trachomatis 434/Bu putative lipoprotein YP_001654582.1 603530 D 471472 CDS YP_001654583.1 166154465 5858698 604181..604951 1 NC_010287.1 inner membrane protein 604951 5858698 CTL0506 Chlamydia trachomatis 434/Bu inner membrane protein YP_001654583.1 604181 D 471472 CDS YP_001654584.1 166154466 5858603 complement(605159..605542) 1 NC_010287.1 hypothetical protein 605542 5858603 CTL0507 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654584.1 605159 R 471472 CDS YP_001654585.1 166154467 5858086 605731..606975 1 NC_010287.1 putative membrane transport protein 606975 5858086 CTL0508 Chlamydia trachomatis 434/Bu putative membrane transport protein YP_001654585.1 605731 D 471472 CDS YP_001654586.1 166154468 5858416 606965..608179 1 NC_010287.1 hypothetical protein 608179 5858416 CTL0509 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654586.1 606965 D 471472 CDS YP_001654587.1 166154469 5858396 complement(608183..609307) 1 NC_010287.1 putative cysteine desulfurase 609307 5858396 CTL0510 Chlamydia trachomatis 434/Bu putative cysteine desulfurase YP_001654587.1 608183 R 471472 CDS YP_001654588.1 166154470 5858252 complement(609313..610059) 1 NC_010287.1 protein phosphatase 2C 610059 5858252 CTL0511 Chlamydia trachomatis 434/Bu protein phosphatase 2C YP_001654588.1 609313 R 471472 CDS YP_001654589.1 166154471 5858282 610378..610869 1 NC_010287.1 hypothetical protein 610869 5858282 CTL0512 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654589.1 610378 D 471472 CDS YP_001654590.1 166154472 5857933 610878..611576 1 NC_010287.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 611576 dnaQ 5857933 dnaQ Chlamydia trachomatis 434/Bu DNA polymerase III subunit epsilon YP_001654590.1 610878 D 471472 CDS YP_001654591.1 166154473 5858787 611573..612343 1 NC_010287.1 hypothetical protein 612343 5858787 CTL0514 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654591.1 611573 D 471472 CDS YP_001654592.1 166154474 5858341 612336..612926 1 NC_010287.1 hypothetical protein 612926 5858341 CTL0515 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654592.1 612336 D 471472 CDS YP_001654593.1 166154475 5858391 complement(612947..614887) 1 NC_010287.1 ABC transporter, ATP-binding and membrane components 614887 5858391 CTL0516 Chlamydia trachomatis 434/Bu ABC transporter, ATP-binding and membrane components YP_001654593.1 612947 R 471472 CDS YP_001654594.1 166154476 5858233 complement(614853..615827) 1 NC_010287.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 615827 accA 5858233 accA Chlamydia trachomatis 434/Bu acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001654594.1 614853 R 471472 CDS YP_001654595.1 166154477 5858041 complement(615960..617141) 1 NC_010287.1 hypothetical protein 617141 5858041 CTL0518 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654595.1 615960 R 471472 CDS YP_001654596.1 166154478 5858371 complement(617259..617561) 1 NC_010287.1 integration host factor alpha-subunit 617561 ihfA 5858371 ihfA Chlamydia trachomatis 434/Bu integration host factor alpha-subunit YP_001654596.1 617259 R 471472 CDS YP_001654597.1 166154479 5858427 complement(617781..618560) 1 NC_010287.1 N-acetylmuramoyl-L-alanine amidase 618560 amiA 5858427 amiA Chlamydia trachomatis 434/Bu N-acetylmuramoyl-L-alanine amidase YP_001654597.1 617781 R 471472 CDS YP_001654598.1 166154480 5858472 complement(618475..619926) 1 NC_010287.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 619926 murE 5858472 murE Chlamydia trachomatis 434/Bu UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001654598.1 618475 R 471472 CDS YP_001654599.1 166154481 5858504 complement(620249..622192) 1 NC_010287.1 penicillin-binding protein 622192 pbp 5858504 pbp Chlamydia trachomatis 434/Bu penicillin-binding protein YP_001654599.1 620249 R 471472 CDS YP_001654600.1 166154482 5858686 complement(622179..622466) 1 NC_010287.1 hypothetical protein 622466 5858686 CTL0523 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654600.1 622179 R 471472 CDS YP_001654601.1 166154483 5857921 complement(622466..623368) 1 NC_010287.1 S-adenosyl-methyltransferase MraW 623368 mraW 5857921 mraW Chlamydia trachomatis 434/Bu S-adenosyl-methyltransferase MraW YP_001654601.1 622466 R 471472 CDS YP_001654602.1 166154484 5858465 623646..624212 1 NC_010287.1 hypothetical protein 624212 5858465 CTL0525 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654602.1 623646 D 471472 CDS YP_001654603.1 166154485 5858415 624219..624638 1 NC_010287.1 hypothetical protein 624638 5858415 CTL0526 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654603.1 624219 D 471472 CDS YP_001654604.1 166154486 5857906 624880..626247 1 NC_010287.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 626247 dnaA 5857906 dnaA Chlamydia trachomatis 434/Bu chromosomal replication initiation protein YP_001654604.1 624880 D 471472 CDS YP_001654605.1 166154487 5858196 626299..626883 1 NC_010287.1 hypothetical protein 626883 5858196 CTL0528 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654605.1 626299 D 471472 CDS YP_001654606.1 166154488 5858326 complement(626855..627514) 1 NC_010287.1 hypothetical protein 627514 5858326 CTL0529 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654606.1 626855 R 471472 CDS YP_001654607.1 166154489 5858399 627516..629027 1 NC_010287.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 629027 nqrB 5858399 nqrB Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit B YP_001654607.1 627516 D 471472 CDS YP_001654608.1 166154490 5858579 629031..629981 1 NC_010287.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 629981 nqrC 5858579 nqrC Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit C YP_001654608.1 629031 D 471472 CDS YP_001654609.1 166154491 5858774 629971..630612 1 NC_010287.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 630612 nqrD 5858774 nqrD Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit D YP_001654609.1 629971 D 471472 CDS YP_001654610.1 166154492 5858458 630618..631352 1 NC_010287.1 Na(+)-translocating NADH-quinone reductase subunit E 631352 nqrE 5858458 nqrE Chlamydia trachomatis 434/Bu Na(+)-translocating NADH-quinone reductase subunit E YP_001654610.1 630618 D 471472 CDS YP_001654611.1 166154493 5858483 complement(631376..631729) 1 NC_010287.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 631729 gcsH 5858483 gcsH Chlamydia trachomatis 434/Bu glycine cleavage system protein H YP_001654611.1 631376 R 471472 CDS YP_001654612.1 166154494 5858032 complement(631749..633821) 1 NC_010287.1 hypothetical protein 633821 5858032 CTL0535 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654612.1 631749 R 471472 CDS YP_001654613.1 166154495 5858255 complement(634016..635440) 1 NC_010287.1 phospholipase D 635440 5858255 CTL0536 Chlamydia trachomatis 434/Bu phospholipase D YP_001654613.1 634016 R 471472 CDS YP_001654614.1 166154496 5858339 complement(635446..636165) 1 NC_010287.1 lipoate-protein ligase A 636165 lplA 5858339 lplA Chlamydia trachomatis 434/Bu lipoate-protein ligase A YP_001654614.1 635446 R 471472 CDS YP_001654615.1 166154497 5858192 636430..638994 1 NC_010287.1 ATP-dependent Clp protease 638994 clpC 5858192 clpC Chlamydia trachomatis 434/Bu ATP-dependent Clp protease YP_001654615.1 636430 D 471472 CDS YP_001654616.1 166154498 5858654 complement(638975..640051) 1 NC_010287.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 640051 mnmA 5858654 mnmA Chlamydia trachomatis 434/Bu tRNA-specific 2-thiouridylase MnmA YP_001654616.1 638975 R 471472 CDS YP_001654617.1 166154499 5858413 640283..641977 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 641977 5858413 CTL0540 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654617.1 640283 D 471472 CDS YP_001654618.1 166154500 5858253 complement(642064..643209) 1 NC_010287.1 hypothetical protein 643209 5858253 CTL0541 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654618.1 642064 R 471472 CDS YP_001654619.1 166154501 5858245 complement(643267..643944) 1 NC_010287.1 PTS family membrane transport protein IIA subunit 643944 5858245 CTL0542 Chlamydia trachomatis 434/Bu PTS family membrane transport protein IIA subunit YP_001654619.1 643267 R 471472 CDS YP_001654620.1 166154502 5858364 complement(643947..644423) 1 NC_010287.1 PTS family membrane transport protein IIA subunit 644423 ptsN_2 5858364 ptsN_2 Chlamydia trachomatis 434/Bu PTS family membrane transport protein IIA subunit YP_001654620.1 643947 R 471472 CDS YP_001654621.1 166154503 5858750 complement(644425..644862) 1 NC_010287.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 644862 dut 5858750 dut Chlamydia trachomatis 434/Bu deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001654621.1 644425 R 471472 CDS YP_001654622.1 166154504 5857955 complement(644899..645825) 1 NC_010287.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 645825 accD 5857955 accD Chlamydia trachomatis 434/Bu acetyl-CoA carboxylase subunit beta YP_001654622.1 644899 R 471472 CDS YP_001654623.1 166154505 5858610 complement(645896..646516) 1 NC_010287.1 superoxide dismutase 646516 sodM 5858610 sodM Chlamydia trachomatis 434/Bu superoxide dismutase YP_001654623.1 645896 R 471472 CDS YP_001654624.1 166154506 5858460 complement(646648..648429) 1 NC_010287.1 phosphoglucomutase 648429 mrsA 5858460 mrsA Chlamydia trachomatis 434/Bu phosphoglucomutase YP_001654624.1 646648 R 471472 CDS YP_001654625.1 166154507 5858586 complement(648581..649048) 1 NC_010287.1 hypothetical protein 649048 5858586 CTL0548 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654625.1 648581 R 471472 CDS YP_001654626.1 166154508 5858279 649157..649852 1 NC_010287.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 649852 rnc 5858279 rnc Chlamydia trachomatis 434/Bu ribonuclease III YP_001654626.1 649157 D 471472 CDS YP_001654627.1 166154509 5858120 649836..651200 1 NC_010287.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 651200 radA 5858120 radA Chlamydia trachomatis 434/Bu DNA repair protein RadA YP_001654627.1 649836 D 471472 CDS YP_001654628.1 166154510 5858139 651244..651903 1 NC_010287.1 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 651903 hemC 5858139 hemC Chlamydia trachomatis 434/Bu porphobilinogen deaminase YP_001654628.1 651244 D 471472 CDS YP_001654629.1 166154511 5857923 complement(652698..655502) 1 NC_010287.1 PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase 655502 pknD 5857923 pknD Chlamydia trachomatis 434/Bu serine/threonine-protein kinase YP_001654629.1 652698 R 471472 CDS YP_001654630.1 166154512 5858711 complement(655517..658336) 1 NC_010287.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 658336 valS 5858711 valS Chlamydia trachomatis 434/Bu valyl-tRNA synthetase YP_001654630.1 655517 R 471472 CDS YP_001654631.1 166154513 5858805 complement(658463..658978) 1 NC_010287.1 hypothetical protein 658978 5858805 CTL0555 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654631.1 658463 R 471472 CDS YP_001654632.1 166154514 5857935 complement(658899..659324) 1 NC_010287.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 659324 atpK 5857935 atpK Chlamydia trachomatis 434/Bu V-type ATP synthase subunit K YP_001654632.1 658899 R 471472 CDS YP_001654633.1 166154515 5858641 complement(659386..661335) 1 NC_010287.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 661335 atpI 5858641 atpI Chlamydia trachomatis 434/Bu V-type ATP synthase subunit I YP_001654633.1 659386 R 471472 CDS YP_001654634.1 166154516 5858484 complement(661341..661952) 1 NC_010287.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 661952 atpD 5858484 atpD Chlamydia trachomatis 434/Bu V-type ATP synthase subunit D YP_001654634.1 661341 R 471472 CDS YP_001654635.1 166154517 5858469 complement(661937..663253) 1 NC_010287.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 663253 atpB 5858469 atpB Chlamydia trachomatis 434/Bu V-type ATP synthase subunit B YP_001654635.1 661937 R 471472 CDS YP_001654636.1 166154518 5858487 complement(663256..665031) 1 NC_010287.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 665031 atpA 5858487 atpA Chlamydia trachomatis 434/Bu V-type ATP synthase subunit A YP_001654636.1 663256 R 471472 CDS YP_001654637.1 166154519 5858609 complement(665025..665825) 1 NC_010287.1 hypothetical protein 665825 5858609 CTL0561 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654637.1 665025 R 471472 CDS YP_001654638.1 166154520 5857920 complement(665992..666618) 1 NC_010287.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 666618 atpE 5857920 atpE Chlamydia trachomatis 434/Bu V-type ATP synthase subunit E YP_001654638.1 665992 R 471472 CDS YP_001654639.1 166154521 5858474 666727..667437 1 NC_010287.1 hypothetical protein 667437 5858474 CTL0563 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654639.1 666727 D 471472 CDS YP_001654640.1 166154522 5858293 complement(667445..667816) 1 NC_010287.1 hypothetical protein 667816 5858293 CTL0564 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654640.1 667445 R 471472 CDS YP_001654641.1 166154523 5857936 complement(667861..668844) 1 NC_010287.1 transaldolase B 668844 tal 5857936 tal Chlamydia trachomatis 434/Bu transaldolase B YP_001654641.1 667861 R 471472 CDS YP_001654642.1 166154524 5858218 complement(668956..673146) 1 NC_010287.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 673146 rpoC 5858218 rpoC Chlamydia trachomatis 434/Bu DNA-directed RNA polymerase subunit beta' YP_001654642.1 668956 R 471472 CDS YP_001654643.1 166154525 5858141 complement(673171..676929) 1 NC_010287.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 676929 rpoB 5858141 rpoB Chlamydia trachomatis 434/Bu DNA-directed RNA polymerase subunit beta YP_001654643.1 673171 R 471472 CDS YP_001654644.1 166154526 5858736 complement(677290..677682) 1 NC_010287.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 677682 rplL 5858736 rplL Chlamydia trachomatis 434/Bu 50S ribosomal protein L7/L12 YP_001654644.1 677290 R 471472 CDS YP_001654645.1 166154527 5858604 complement(677714..678232) 1 NC_010287.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 678232 rplJ 5858604 rplJ Chlamydia trachomatis 434/Bu 50S ribosomal protein L10 YP_001654645.1 677714 R 471472 CDS YP_001654646.1 166154528 5858670 complement(678254..678952) 1 NC_010287.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 678952 rplA 5858670 rplA Chlamydia trachomatis 434/Bu 50S ribosomal protein L1 YP_001654646.1 678254 R 471472 CDS YP_001654647.1 166154529 5858530 complement(678975..679400) 1 NC_010287.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 679400 rplK 5858530 rplK Chlamydia trachomatis 434/Bu 50S ribosomal protein L11 YP_001654647.1 678975 R 471472 CDS YP_001654648.1 166154530 5858741 complement(679506..680054) 1 NC_010287.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 680054 nusG 5858741 nusG Chlamydia trachomatis 434/Bu transcription antitermination protein NusG YP_001654648.1 679506 R 471472 CDS YP_001654649.1 166154531 5858101 complement(680058..680306) 1 NC_010287.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 680306 secE 5858101 secE Chlamydia trachomatis 434/Bu preprotein translocase subunit SecE YP_001654649.1 680058 R 471472 CDS YP_001654650.1 166154532 5858263 complement(680449..681633) 1 NC_010287.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 681633 tufA 5858263 tufA Chlamydia trachomatis 434/Bu elongation factor Tu YP_001654650.1 680449 R 471472 CDS YP_001654651.1 166154533 5858264 complement(681981..682202) 1 NC_010287.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 682202 infA 5858264 infA Chlamydia trachomatis 434/Bu translation initiation factor IF-1 YP_001654651.1 681981 R 471472 CDS YP_001654652.1 166154534 5858717 682615..683526 1 NC_010287.1 hypothetical protein 683526 5858717 CTL0576 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654652.1 682615 D 471472 CDS YP_001654653.1 166154535 5858294 683523..683969 1 NC_010287.1 hypothetical protein 683969 5858294 CTL0577 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654653.1 683523 D 471472 CDS YP_001654654.1 166154536 5857915 complement(686181..686363) 1 NC_010287.1 hypothetical protein 686363 5857915 CTL0580 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654654.1 686181 R 471472 CDS YP_001654655.1 166154537 5858290 complement(687086..687712) 1 NC_010287.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 687712 trpC 5858290 trpC Chlamydia trachomatis 434/Bu N-(5'-phosphoribosyl)anthranilate isomerase YP_001654655.1 687086 R 471472 CDS YP_001654656.1 166154538 5858807 687908..688732 1 NC_010287.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 688732 tpiA 5858807 tpiA Chlamydia trachomatis 434/Bu triosephosphate isomerase YP_001654656.1 687908 D 471472 CDS YP_001654657.1 166154539 5858359 688746..690296 1 NC_010287.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 690296 xseA 5858359 xseA Chlamydia trachomatis 434/Bu exodeoxyribonuclease VII large subunit YP_001654657.1 688746 D 471472 CDS YP_001654658.1 166154540 5858834 690280..690498 1 NC_010287.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 690498 xseB 5858834 xseB Chlamydia trachomatis 434/Bu exodeoxyribonuclease VII small subunit YP_001654658.1 690280 D 471472 CDS YP_001654659.1 166154541 5858803 690505..690777 1 NC_010287.1 hypothetical protein 690777 5858803 CTL0584 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654659.1 690505 D 471472 CDS YP_001654660.1 166154542 5858397 690774..692696 1 NC_010287.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 692696 dxs 5858397 dxs Chlamydia trachomatis 434/Bu 1-deoxy-D-xylulose-5-phosphate synthase YP_001654660.1 690774 D 471472 CDS YP_001654661.1 166154543 5857956 692793..694250 1 NC_010287.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 694250 pykF 5857956 pykF Chlamydia trachomatis 434/Bu pyruvate kinase YP_001654661.1 692793 D 471472 CDS YP_001654662.1 166154544 5858569 694273..699633 1 NC_010287.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 699633 uvrA 5858569 uvrA Chlamydia trachomatis 434/Bu excinuclease ABC subunit A YP_001654662.1 694273 D 471472 CDS YP_001654663.1 166154545 5858828 699851..701251 1 NC_010287.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 701251 dnaX 5858828 dnaX Chlamydia trachomatis 434/Bu DNA polymerase III subunits gamma and tau YP_001654663.1 699851 D 471472 CDS YP_001654664.1 166154546 5858113 701244..701534 1 NC_010287.1 hypothetical protein 701534 5858113 CTL0589 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654664.1 701244 D 471472 CDS YP_001654665.1 166154547 5857919 complement(701544..703259) 1 NC_010287.1 phosphoenolpyruvate-protein phosphotransferase 703259 ptsI 5857919 ptsI Chlamydia trachomatis 434/Bu phosphoenolpyruvate-protein phosphotransferase YP_001654665.1 701544 R 471472 CDS YP_001654666.1 166154548 5858721 complement(703259..703588) 1 NC_010287.1 phosphocarrier protein HPr 703588 ptsH 5858721 ptsH Chlamydia trachomatis 434/Bu phosphocarrier protein HPr YP_001654666.1 703259 R 471472 CDS YP_001654667.1 166154549 5858679 complement(703726..704187) 1 NC_010287.1 hypothetical protein 704187 5858679 CTL0592 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654667.1 703726 R 471472 CDS YP_001654668.1 166154550 5857904 complement(704244..704426) 1 NC_010287.1 hypothetical protein 704426 5857904 CTL0592A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654668.1 704244 R 471472 CDS YP_001654669.1 166154551 5858402 704471..706000 1 NC_010287.1 hypothetical protein 706000 5858402 CTL0593 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654669.1 704471 D 471472 CDS YP_001654670.1 166154552 5858223 complement(706072..708108) 1 NC_010287.1 2-oxoisovalerate dehydrogenase alpha subunit 708108 5858223 CTL0594 Chlamydia trachomatis 434/Bu 2-oxoisovalerate dehydrogenase alpha subunit YP_001654670.1 706072 R 471472 CDS YP_001654671.1 166154553 5858338 complement(708143..709321) 1 NC_010287.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 709321 dnaJ 5858338 dnaJ Chlamydia trachomatis 434/Bu chaperone protein DnaJ YP_001654671.1 708143 R 471472 CDS YP_001654672.1 166154554 5858534 complement(709350..709526) 1 NC_010287.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 709526 rpsU 5858534 rpsU Chlamydia trachomatis 434/Bu 30S ribosomal protein S21 YP_001654672.1 709350 R 471472 CDS YP_001654673.1 166154555 5857978 complement(709724..710356) 1 NC_010287.1 O-sialoglycoprotein endopeptidase 710356 5857978 CTL0597 Chlamydia trachomatis 434/Bu O-sialoglycoprotein endopeptidase YP_001654673.1 709724 R 471472 CDS YP_001654674.1 166154556 5858232 710666..713125 1 NC_010287.1 ATP-dependent protease La 713125 lon 5858232 lon Chlamydia trachomatis 434/Bu ATP-dependent protease La YP_001654674.1 710666 D 471472 CDS YP_001654675.1 166154557 5858097 713227..713592 1 NC_010287.1 hypothetical protein 713592 5858097 CTL0599 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654675.1 713227 D 471472 CDS YP_001654676.1 166154558 5858302 713935..714849 1 NC_010287.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 714849 5858302 CTL0600 Chlamydia trachomatis 434/Bu ribonuclease Z YP_001654676.1 713935 D 471472 CDS YP_001654677.1 166154559 5858132 714911..715858 1 NC_010287.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 715858 xerC 5858132 xerC Chlamydia trachomatis 434/Bu site-specific tyrosine recombinase XerC YP_001654677.1 714911 D 471472 CDS YP_001654678.1 166154560 5857939 715912..717501 1 NC_010287.1 ABC transporter, ATP-binding component 717501 5857939 CTL0602 Chlamydia trachomatis 434/Bu ABC transporter, ATP-binding component YP_001654678.1 715912 D 471472 CDS YP_001654679.1 166154561 5857929 717537..718127 1 NC_010287.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 718127 5857929 CTL0603 Chlamydia trachomatis 434/Bu Maf-like protein YP_001654679.1 717537 D 471472 CDS YP_001654680.1 166154562 5858295 718109..719809 1 NC_010287.1 putative lipoprotein 719809 5858295 CTL0604 Chlamydia trachomatis 434/Bu putative lipoprotein YP_001654680.1 718109 D 471472 CDS YP_001654681.1 166154563 5858366 719816..721918 1 NC_010287.1 hypothetical protein 721918 5858366 CTL0605 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654681.1 719816 D 471472 CDS YP_001654682.1 166154564 5858231 complement(721992..722300) 1 NC_010287.1 preprotein translocase subunit SecG 722300 secG 5858231 secG Chlamydia trachomatis 434/Bu preprotein translocase subunit SecG YP_001654682.1 721992 R 471472 CDS YP_001654683.1 166154565 5858262 complement(722456..723001) 1 NC_010287.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 723001 def 5858262 def Chlamydia trachomatis 434/Bu peptide deformylase YP_001654683.1 722456 R 471472 CDS YP_001654684.1 166154566 5858688 complement(723276..724109) 1 NC_010287.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 724109 ksgA 5858688 ksgA Chlamydia trachomatis 434/Bu dimethyladenosine transferase YP_001654684.1 723276 R 471472 CDS YP_001654685.1 166154567 5858094 complement(724125..725186) 1 NC_010287.1 hypothetical protein 725186 5858094 CTL0609 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654685.1 724125 R 471472 CDS YP_001654686.1 166154568 5858408 complement(725491..727605) 1 NC_010287.1 hypothetical protein 727605 5858408 CTL0610 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654686.1 725491 R 471472 CDS YP_001654687.1 166154569 5858273 728062..728394 1 NC_010287.1 carries characteristic twin membrane spanning domains; hypothetical protein 728394 5858273 CTL0611A Chlamydia trachomatis 434/Bu hypothetical protein YP_001654687.1 728062 D 471472 CDS YP_001654688.1 166154570 5858360 complement(729014..729604) 1 NC_010287.1 putative inner membrane protein 729604 5858360 CTL0613 Chlamydia trachomatis 434/Bu putative inner membrane protein YP_001654688.1 729014 R 471472 CDS YP_001654689.1 166154571 5858261 complement(729856..730482) 1 NC_010287.1 hypothetical protein 730482 5858261 CTL0614 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654689.1 729856 R 471472 CDS YP_001654690.1 166154572 5858751 complement(730644..731504) 1 NC_010287.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 731504 dapA 5858751 dapA Chlamydia trachomatis 434/Bu dihydrodipicolinate synthase YP_001654690.1 730644 R 471472 CDS YP_001654691.1 166154573 5858118 complement(731514..732809) 1 NC_010287.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 732809 lysC 5858118 lysC Chlamydia trachomatis 434/Bu aspartate kinase YP_001654691.1 731514 R 471472 CDS YP_001654692.1 166154574 5858738 complement(732802..733806) 1 NC_010287.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 733806 asd 5858738 asd Chlamydia trachomatis 434/Bu aspartate-semialdehyde dehydrogenase YP_001654692.1 732802 R 471472 CDS YP_001654693.1 166154575 5858481 complement(733816..734577) 1 NC_010287.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 734577 dapB 5858481 dapB Chlamydia trachomatis 434/Bu dihydrodipicolinate reductase YP_001654693.1 733816 R 471472 CDS YP_001654694.1 166154576 5858074 complement(734754..736481) 1 NC_010287.1 putative integral membrane protein 736481 5858074 CTL0619 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654694.1 734754 R 471472 CDS YP_001654695.1 166154577 5858438 736651..737973 1 NC_010287.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 737973 aroA 5858438 aroA Chlamydia trachomatis 434/Bu 3-phosphoshikimate 1-carboxyvinyltransferase YP_001654695.1 736651 D 471472 CDS YP_001654696.1 166154578 5858488 737915..738469 1 NC_010287.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 738469 aroL 5858488 aroL Chlamydia trachomatis 434/Bu shikimate kinase YP_001654696.1 737915 D 471472 CDS YP_001654697.1 166154579 5858480 738462..739535 1 NC_010287.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 739535 aroC 5858480 aroC Chlamydia trachomatis 434/Bu chorismate synthase YP_001654697.1 738462 D 471472 CDS YP_001654698.1 166154580 5858466 739532..740653 1 NC_010287.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 740653 aroB 5858466 aroB Chlamydia trachomatis 434/Bu 3-dehydroquinate synthase YP_001654698.1 739532 D 471472 CDS YP_001654699.1 166154581 5858629 740634..742076 1 NC_010287.1 AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein 742076 aroDE 5858629 aroDE Chlamydia trachomatis 434/Bu bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein YP_001654699.1 740634 D 471472 CDS YP_001654700.1 166154582 5858666 742118..742903 1 NC_010287.1 hypothetical protein 742903 5858666 CTL0625 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654700.1 742118 D 471472 CDS YP_001654701.1 166154583 5858286 743044..744372 1 NC_010287.1 hypothetical protein 744372 5858286 CTL0626 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654701.1 743044 D 471472 CDS YP_001654702.1 166154584 5858403 745044..746495 1 NC_010287.1 arginine/ornithine antiporter 746495 5858403 CTL0628 Chlamydia trachomatis 434/Bu arginine/ornithine antiporter YP_001654702.1 745044 D 471472 CDS YP_001654703.1 166154585 5858352 746667..747725 1 NC_010287.1 putative oxidoreductase 747725 5858352 CTL0629 Chlamydia trachomatis 434/Bu putative oxidoreductase YP_001654703.1 746667 D 471472 CDS YP_001654704.1 166154586 5858419 complement(747767..748747) 1 NC_010287.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 748747 mdhC 5858419 mdhC Chlamydia trachomatis 434/Bu malate dehydrogenase YP_001654704.1 747767 R 471472 CDS YP_001654705.1 166154587 5858450 complement(748937..749077) 1 NC_010287.1 late transcription unit A protein 749077 ltuA 5858450 ltuA Chlamydia trachomatis 434/Bu late transcription unit A protein YP_001654705.1 748937 R 471472 CDS YP_001654706.1 166154588 5858722 complement(749192..750769) 1 NC_010287.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 750769 pgi 5858722 pgi Chlamydia trachomatis 434/Bu glucose-6-phosphate isomerase YP_001654706.1 749192 R 471472 CDS YP_001654707.1 166154589 5858597 complement(750882..752225) 1 NC_010287.1 putative nucleotide-binding protein 752225 5858597 CTL0634 Chlamydia trachomatis 434/Bu putative nucleotide-binding protein YP_001654707.1 750882 R 471472 CDS YP_001654708.1 166154590 5858384 complement(752238..753038) 1 NC_010287.1 metal-dependent hydrolase 753038 phnP 5858384 phnP Chlamydia trachomatis 434/Bu metal-dependent hydrolase YP_001654708.1 752238 R 471472 CDS YP_001654709.1 166154591 5858448 complement(753067..753840) 1 NC_010287.1 arginine transport substrate-binding protein 753840 artJ 5858448 artJ Chlamydia trachomatis 434/Bu arginine transport substrate-binding protein YP_001654709.1 753067 R 471472 CDS YP_001654710.1 166154592 5858039 complement(753909..754745) 1 NC_010287.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 754745 aroG 5858039 aroG Chlamydia trachomatis 434/Bu 3-deoxy-7-phosphoheptulonate synthase YP_001654710.1 753909 R 471472 CDS YP_001654711.1 166154593 5858028 complement(754882..755073) 1 NC_010287.1 hypothetical protein 755073 5858028 CTL0638 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654711.1 754882 R 471472 CDS YP_001654712.1 166154594 5858257 755256..755987 1 NC_010287.1 hypothetical protein 755987 5858257 CTL0639 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654712.1 755256 D 471472 CDS YP_001654713.1 166154595 5858251 complement(755998..757617) 1 NC_010287.1 hypothetical protein 757617 5858251 CTL0640 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654713.1 755998 R 471472 CDS YP_001654714.1 166154596 5858401 complement(757632..757967) 1 NC_010287.1 hypothetical protein 757967 5858401 CTL0641 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654714.1 757632 R 471472 CDS YP_001654715.1 166154597 5858240 complement(757964..758833) 1 NC_010287.1 hypothetical protein 758833 5858240 CTL0642 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654715.1 757964 R 471472 CDS YP_001654716.1 166154598 5858228 759120..761195 1 NC_010287.1 hypothetical protein 761195 5858228 CTL0643 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654716.1 759120 D 471472 CDS YP_001654717.1 166154599 5858370 complement(761209..761556) 1 NC_010287.1 hypothetical protein 761556 5858370 CTL0644 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654717.1 761209 R 471472 CDS YP_001654718.1 166154600 5858234 761738..762964 1 NC_010287.1 hypothetical protein 762964 5858234 CTL0645 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654718.1 761738 D 471472 CDS YP_001654719.1 166154601 5858236 763072..764256 1 NC_010287.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 764256 dapL 5858236 dapL Chlamydia trachomatis 434/Bu L,L-diaminopimelate aminotransferase YP_001654719.1 763072 D 471472 CDS YP_001654720.1 166154602 5858682 764264..765271 1 NC_010287.1 ABC transporter substrate-binding component 765271 5858682 CTL0647 Chlamydia trachomatis 434/Bu ABC transporter substrate-binding component YP_001654720.1 764264 D 471472 CDS YP_001654721.1 166154603 5858283 complement(765280..766410) 1 NC_010287.1 hypothetical protein 766410 5858283 CTL0648 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654721.1 765280 R 471472 CDS YP_001654722.1 166154604 5858382 766611..768356 1 NC_010287.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 768356 proS 5858382 proS Chlamydia trachomatis 434/Bu prolyl-tRNA synthetase YP_001654722.1 766611 D 471472 CDS YP_001654723.1 166154605 5858140 768425..769603 1 NC_010287.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 769603 hrcA 5858140 hrcA Chlamydia trachomatis 434/Bu heat-inducible transcription repressor YP_001654723.1 768425 D 471472 CDS YP_001654724.1 166154606 5858410 769600..770172 1 NC_010287.1 HSP-70 cofactor 770172 grpE 5858410 grpE Chlamydia trachomatis 434/Bu HSP-70 cofactor YP_001654724.1 769600 D 471472 CDS YP_001654725.1 166154607 5858788 770198..772180 1 NC_010287.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 772180 dnaK 5858788 dnaK Chlamydia trachomatis 434/Bu molecular chaperone DnaK YP_001654725.1 770198 D 471472 CDS YP_001654726.1 166154608 5858673 772473..774557 1 NC_010287.1 exoribonuclease II 774557 vacB 5858673 vacB Chlamydia trachomatis 434/Bu exoribonuclease II YP_001654726.1 772473 D 471472 CDS YP_001654727.1 166154609 5858827 774813..775577 1 NC_010287.1 hypothetical protein 775577 5858827 CTL0655 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654727.1 774813 D 471472 CDS YP_001654728.1 166154610 5858392 complement(776000..776986) 1 NC_010287.1 carbohydrate isomerase 776986 5858392 CTL0656 Chlamydia trachomatis 434/Bu carbohydrate isomerase YP_001654728.1 776000 R 471472 CDS YP_001654729.1 166154611 5857914 complement(777018..778184) 1 NC_010287.1 branched-chain alpha-keto acid dehydrogenase subunit E2 778184 sucB 5857914 sucB Chlamydia trachomatis 434/Bu branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001654729.1 777018 R 471472 CDS YP_001654730.1 166154612 5858315 complement(778430..779668) 1 NC_010287.1 Sodium:dicarboxylate symport protein 779668 gltT 5858315 gltT Chlamydia trachomatis 434/Bu Sodium:dicarboxylate symport protein YP_001654730.1 778430 R 471472 CDS YP_001654731.1 166154613 5858201 complement(779665..780774) 1 NC_010287.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 780774 lpxK 5858201 lpxK Chlamydia trachomatis 434/Bu tetraacyldisaccharide 4'-kinase YP_001654731.1 779665 R 471472 CDS YP_001654732.1 166154614 5858244 complement(780940..781749) 1 NC_010287.1 23S rRNA methyltransferase 781749 5858244 CTL0660 Chlamydia trachomatis 434/Bu 23S rRNA methyltransferase YP_001654732.1 780940 R 471472 CDS YP_001654733.1 166154615 5858287 complement(781737..782564) 1 NC_010287.1 N6-adenine-specific DNA methylase 782564 5858287 CTL0661 Chlamydia trachomatis 434/Bu N6-adenine-specific DNA methylase YP_001654733.1 781737 R 471472 CDS YP_001654734.1 166154616 5857934 complement(782561..783160) 1 NC_010287.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 783160 ribC 5857934 ribC Chlamydia trachomatis 434/Bu riboflavin synthase subunit alpha YP_001654734.1 782561 R 471472 CDS YP_001654735.1 166154617 5858672 783553..784017 1 NC_010287.1 transcriptional regulator NrdR 784017 nrdR 5858672 nrdR Chlamydia trachomatis 434/Bu transcriptional regulator NrdR YP_001654735.1 783553 D 471472 CDS YP_001654736.1 166154618 5858340 784031..784405 1 NC_010287.1 dnaK suppressor protein 784405 dksA 5858340 dksA Chlamydia trachomatis 434/Bu dnaK suppressor protein YP_001654736.1 784031 D 471472 CDS YP_001654737.1 166154619 5858209 784411..784914 1 NC_010287.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 784914 lspA 5858209 lspA Chlamydia trachomatis 434/Bu lipoprotein signal peptidase YP_001654737.1 784411 D 471472 CDS YP_001654738.1 166154620 5858699 785016..786377 1 NC_010287.1 Sodium/alanine symporter protein 786377 5858699 CTL0666 Chlamydia trachomatis 434/Bu Sodium/alanine symporter protein YP_001654738.1 785016 D 471472 CDS YP_001654739.1 166154621 5858266 786593..787870 1 NC_010287.1 polyA polymerase 787870 pcnB 5858266 pcnB Chlamydia trachomatis 434/Bu polyA polymerase YP_001654739.1 786593 D 471472 CDS YP_001654740.1 166154622 5858639 787931..789754 1 NC_010287.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 789754 lpxB 5858639 lpxB Chlamydia trachomatis 434/Bu lipid-A-disaccharide synthase YP_001654740.1 787931 D 471472 CDS YP_001654741.1 166154623 5858107 789861..792788 1 NC_010287.1 polymorphic outer membrane protein 792788 pmpA 5858107 pmpA Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654741.1 789861 D 471472 CDS YP_001654742.1 166154624 5858502 792927..798176 1 NC_010287.1 polymorphic outer membrane protein 798176 pmpB 5858502 pmpB Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654742.1 792927 D 471472 CDS YP_001654743.1 166154625 5858099 798351..803675 1 NC_010287.1 polymorphic outer membrane protein 803675 pmpC 5858099 pmpC Chlamydia trachomatis 434/Bu polymorphic outer membrane protein YP_001654743.1 798351 D 471472 CDS YP_001654744.1 166154626 5858272 804228..805058 1 NC_010287.1 metal transporter, metal-binding component 805058 5858272 CTL0672 Chlamydia trachomatis 434/Bu metal transporter, metal-binding component YP_001654744.1 804228 D 471472 CDS YP_001654745.1 166154627 5858376 805055..805765 1 NC_010287.1 metal transporter, ATP-binding component 805765 5858376 CTL0673 Chlamydia trachomatis 434/Bu metal transporter, ATP-binding component YP_001654745.1 805055 D 471472 CDS YP_001654746.1 166154628 5858239 805756..806637 1 NC_010287.1 metal transporter, membrane permease component 806637 5858239 CTL0674 Chlamydia trachomatis 434/Bu metal transporter, membrane permease component YP_001654746.1 805756 D 471472 CDS YP_001654747.1 166154629 5857930 complement(806553..807560) 1 NC_010287.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 807560 obgE 5857930 obgE Chlamydia trachomatis 434/Bu GTPase ObgE YP_001654747.1 806553 R 471472 CDS YP_001654748.1 166154630 5858329 complement(807650..807901) 1 NC_010287.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 807901 rpmA 5858329 rpmA Chlamydia trachomatis 434/Bu 50S ribosomal protein L27 YP_001654748.1 807650 R 471472 CDS YP_001654749.1 166154631 5858312 complement(807932..808255) 1 NC_010287.1 50S ribosomal protein L21 808255 rplU 5858312 rplU Chlamydia trachomatis 434/Bu 50S ribosomal protein L21 YP_001654749.1 807932 R 471472 CDS YP_001654750.1 166154632 5858284 808805..809506 1 NC_010287.1 putative inner membrane protein 809506 5858284 CTL0678 Chlamydia trachomatis 434/Bu putative inner membrane protein YP_001654750.1 808805 D 471472 CDS YP_001654751.1 166154633 5858385 809691..809852 1 NC_010287.1 hypothetical protein 809852 5858385 CTL0679 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654751.1 809691 D 471472 CDS YP_001654752.1 166154634 5858242 809869..810030 1 NC_010287.1 hypothetical protein 810030 5858242 CTL0680 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654752.1 809869 D 471472 CDS YP_001654753.1 166154635 5858411 810043..810528 1 NC_010287.1 hypothetical protein 810528 5858411 CTL0681 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654753.1 810043 D 471472 CDS YP_001654754.1 166154636 5857922 810661..811770 1 NC_010287.1 putative cation efflux protein 811770 5857922 CTL0682 Chlamydia trachomatis 434/Bu putative cation efflux protein YP_001654754.1 810661 D 471472 CDS YP_001654755.1 166154637 5858395 811959..812309 1 NC_010287.1 anti-sigma F factor antagonist 812309 rsbV 5858395 rsbV Chlamydia trachomatis 434/Bu anti-sigma F factor antagonist YP_001654755.1 811959 D 471472 CDS YP_001654756.1 166154638 5858733 812487..814352 1 NC_010287.1 hypothetical protein 814352 5858733 CTL0684 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654756.1 812487 D 471472 CDS YP_001654757.1 166154639 5858386 814549..815658 1 NC_010287.1 hypothetical protein 815658 5858386 CTL0685 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654757.1 814549 D 471472 CDS YP_001654758.1 166154640 5858368 815631..816452 1 NC_010287.1 hypothetical protein 816452 5858368 CTL0686 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654758.1 815631 D 471472 CDS YP_001654759.1 166154641 5858221 816388..817077 1 NC_010287.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 817077 ubiE 5858221 ubiE Chlamydia trachomatis 434/Bu ubiquinone/menaquinone biosynthesis methyltransferase YP_001654759.1 816388 D 471472 CDS YP_001654760.1 166154642 5858831 complement(817103..818092) 1 NC_010287.1 hypothetical protein 818092 5858831 CTL0688 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654760.1 817103 R 471472 CDS YP_001654761.1 166154643 5858387 complement(818153..818980) 1 NC_010287.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 818980 dapF 5858387 dapF Chlamydia trachomatis 434/Bu diaminopimelate epimerase YP_001654761.1 818153 R 471472 CDS YP_001654762.1 166154644 5858690 complement(818949..819527) 1 NC_010287.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 819527 clpP 5858690 clpP Chlamydia trachomatis 434/Bu ATP-dependent Clp protease proteolytic subunit YP_001654762.1 818949 R 471472 CDS YP_001654763.1 166154645 5858124 complement(819539..821032) 1 NC_010287.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 821032 glyA 5858124 glyA Chlamydia trachomatis 434/Bu serine hydroxymethyltransferase YP_001654763.1 819539 R 471472 CDS YP_001654764.1 166154646 5858617 821396..822067 1 NC_010287.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 822067 hemD 5858617 hemD Chlamydia trachomatis 434/Bu uroporphyrinogen-III synthase YP_001654764.1 821396 D 471472 CDS YP_001654765.1 166154647 5858357 822170..822706 1 NC_010287.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 822706 ispF 5858357 ispF Chlamydia trachomatis 434/Bu 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001654765.1 822170 D 471472 CDS YP_001654766.1 166154648 5858356 complement(822703..823755) 1 NC_010287.1 putative oxidoreductase 823755 5858356 CTL0694 Chlamydia trachomatis 434/Bu putative oxidoreductase YP_001654766.1 822703 R 471472 CDS YP_001654767.1 166154649 5858248 complement(823772..824089) 1 NC_010287.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 824089 rpsJ 5858248 rpsJ Chlamydia trachomatis 434/Bu 30S ribosomal protein S10 YP_001654767.1 823772 R 471472 CDS YP_001654768.1 166154650 5858519 complement(824097..826181) 1 NC_010287.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 826181 fusA 5858519 fusA Chlamydia trachomatis 434/Bu elongation factor G YP_001654768.1 824097 R 471472 CDS YP_001654769.1 166154651 5858037 complement(826223..826696) 1 NC_010287.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 826696 rpsG 5858037 rpsG Chlamydia trachomatis 434/Bu 30S ribosomal protein S7 YP_001654769.1 826223 R 471472 CDS YP_001654770.1 166154652 5858160 complement(826746..827135) 1 NC_010287.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 827135 rpsL 5858160 rpsL Chlamydia trachomatis 434/Bu 30S ribosomal protein S12 YP_001654770.1 826746 R 471472 CDS YP_001654771.1 166154653 5857998 827377..827715 1 NC_010287.1 hypothetical protein 827715 5857998 CTL0699 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654771.1 827377 D 471472 CDS YP_001654772.1 166154654 5858256 827873..829822 1 NC_010287.1 carboxy-terminal processing protease 829822 tsp 5858256 tsp Chlamydia trachomatis 434/Bu carboxy-terminal processing protease YP_001654772.1 827873 D 471472 CDS YP_001654773.1 166154655 5858812 complement(829929..830381) 1 NC_010287.1 cysteine-rich membrane protein 830381 crpA 5858812 crpA Chlamydia trachomatis 434/Bu cysteine-rich membrane protein YP_001654773.1 829929 R 471472 CDS YP_001654774.1 166154656 5858203 complement(830559..832220) 1 NC_010287.1 60kD cysteine-rich outer membrane protein 832220 omcB 5858203 omcB Chlamydia trachomatis 434/Bu 60kD cysteine-rich outer membrane protein YP_001654774.1 830559 R 471472 CDS YP_001654775.1 166154657 5858422 complement(832367..832633) 1 NC_010287.1 cysteine-rich outer membrane protein 832633 omcA 5858422 omcA Chlamydia trachomatis 434/Bu cysteine-rich outer membrane protein YP_001654775.1 832367 R 471472 CDS YP_001654776.1 166154658 5858155 832970..833194 1 NC_010287.1 putative lipoprotein 833194 5858155 CTL0704 Chlamydia trachomatis 434/Bu putative lipoprotein YP_001654776.1 832970 D 471472 CDS YP_001654777.1 166154659 5858291 complement(833191..834711) 1 NC_010287.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 834711 gltX 5858291 gltX Chlamydia trachomatis 434/Bu glutamyl-tRNA synthetase YP_001654777.1 833191 R 471472 CDS YP_001654778.1 166154660 5858744 complement(834982..835533) 1 NC_010287.1 hypothetical protein 835533 euo 5858744 euo Chlamydia trachomatis 434/Bu hypothetical protein YP_001654778.1 834982 R 471472 CDS YP_001654779.1 166154661 5858123 complement(835937..837691) 1 NC_010287.1 single-stranded-DNA-specific exonuclease 837691 recJ 5858123 recJ Chlamydia trachomatis 434/Bu single-stranded-DNA-specific exonuclease YP_001654779.1 835937 R 471472 CDS YP_001654780.1 166154662 5858531 complement(837809..842011) 1 NC_010287.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF 842011 secF 5858531 secF Chlamydia trachomatis 434/Bu bifunctional preprotein translocase subunit SecD/SecF YP_001654780.1 837809 R 471472 CDS YP_001654781.1 166154663 5858520 complement(842431..842763) 1 NC_010287.1 hypothetical protein 842763 5858520 CTL0709 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654781.1 842431 R 471472 CDS YP_001654782.1 166154664 5858394 843225..843986 1 NC_010287.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 843986 uppS 5858394 uppS Chlamydia trachomatis 434/Bu undecaprenyl pyrophosphate synthase YP_001654782.1 843225 D 471472 CDS YP_001654783.1 166154665 5858818 843992..844909 1 NC_010287.1 phosphatidate cytidylyltransferase 844909 cdsA 5858818 cdsA Chlamydia trachomatis 434/Bu phosphatidate cytidylyltransferase YP_001654783.1 843992 D 471472 CDS YP_001654784.1 166154666 5858467 844906..845556 1 NC_010287.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 845556 cmk 5858467 cmk Chlamydia trachomatis 434/Bu cytidylate kinase YP_001654784.1 844906 D 471472 CDS YP_001654785.1 166154667 5858044 845553..846203 1 NC_010287.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 846203 plsC 5858044 plsC Chlamydia trachomatis 434/Bu 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001654785.1 845553 D 471472 CDS YP_001654786.1 166154668 5858772 846218..847909 1 NC_010287.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 847909 argS 5858772 argS Chlamydia trachomatis 434/Bu arginyl-tRNA synthetase YP_001654786.1 846218 D 471472 CDS YP_001654787.1 166154669 5858463 complement(847947..849281) 1 NC_010287.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 849281 murA 5858463 murA Chlamydia trachomatis 434/Bu UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001654787.1 847947 R 471472 CDS YP_001654788.1 166154670 5858633 849494..852511 1 NC_010287.1 translocated actin-recruiting phosphoprotein 852511 tarp 5858633 tarp Chlamydia trachomatis 434/Bu translocated actin-recruiting phosphoprotein YP_001654788.1 849494 D 471472 CDS YP_001654789.1 166154671 5858082 complement(852563..853279) 1 NC_010287.1 hypothetical protein 853279 5858082 CTL0717 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654789.1 852563 R 471472 CDS YP_001654790.1 166154672 5857916 complement(853462..853965) 1 NC_010287.1 ribosomal-protein-alanine acetyltransferase 853965 5857916 CTL0718 Chlamydia trachomatis 434/Bu ribosomal-protein-alanine acetyltransferase YP_001654790.1 853462 R 471472 CDS YP_001654791.1 166154673 5858265 complement(join(853962..854999,855001..855069)) 1 NC_010287.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 855069 prfB 5858265 prfB Chlamydia trachomatis 434/Bu peptide chain release factor 2 YP_001654791.1 853962 R 471472 CDS YP_001654792.1 166154674 5858020 855389..855649 1 NC_010287.1 Note the Pfam PF02201;SWIB-MDM2 domain.; hypothetical protein 855649 5858020 CTL0720 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654792.1 855389 D 471472 CDS YP_001654793.1 166154675 5858324 855707..856696 1 NC_010287.1 putative metallo-phosphoesterase 856696 5858324 CTL0721 Chlamydia trachomatis 434/Bu putative metallo-phosphoesterase YP_001654793.1 855707 D 471472 CDS YP_001654794.1 166154676 5858346 856686..857345 1 NC_010287.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 857345 ispD 5858346 ispD Chlamydia trachomatis 434/Bu 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001654794.1 856686 D 471472 CDS YP_001654795.1 166154677 5858814 857354..858157 1 NC_010287.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 858157 truA 5858814 truA Chlamydia trachomatis 434/Bu tRNA pseudouridine synthase A YP_001654795.1 857354 D 471472 CDS YP_001654796.1 166154678 5858823 complement(858109..858783) 1 NC_010287.1 HAD superfamily hydrolase 858783 5858823 CTL0724 Chlamydia trachomatis 434/Bu HAD superfamily hydrolase YP_001654796.1 858109 R 471472 CDS YP_001654797.1 166154679 5858348 858876..859517 1 NC_010287.1 hypothetical protein 859517 5858348 CTL0725 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654797.1 858876 D 471472 CDS YP_001654798.1 166154680 5858303 859811..860140 1 NC_010287.1 hypothetical protein 860140 5858303 CTL0726 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654798.1 859811 D 471472 CDS YP_001654799.1 166154681 5858377 860118..861176 1 NC_010287.1 two component regulator, histidine kinase 861176 atoS 5858377 atoS Chlamydia trachomatis 434/Bu two component regulator, histidine kinase YP_001654799.1 860118 D 471472 CDS YP_001654800.1 166154682 5858613 861219..862379 1 NC_010287.1 two component system response regulator 862379 atoC 5858613 atoC Chlamydia trachomatis 434/Bu two component system response regulator YP_001654800.1 861219 D 471472 CDS YP_001654801.1 166154683 5857912 862606..863142 1 NC_010287.1 hypothetical protein 863142 5857912 CTL0729 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654801.1 862606 D 471472 CDS YP_001654802.1 166154684 5858380 863112..863843 1 NC_010287.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 863843 recO 5858380 recO Chlamydia trachomatis 434/Bu DNA repair protein RecO YP_001654802.1 863112 D 471472 CDS YP_001654803.1 166154685 5858178 complement(863840..864442) 1 NC_010287.1 hypothetical protein 864442 5858178 CTL0731 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654803.1 863840 R 471472 CDS YP_001654804.1 166154686 5858300 864920..865714 1 NC_010287.1 hypothetical protein 865714 5858300 CTL0733 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654804.1 864920 D 471472 CDS YP_001654805.1 166154687 5857911 865720..866034 1 NC_010287.1 hypothetical protein 866034 5857911 CTL0734 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654805.1 865720 D 471472 CDS YP_001654806.1 166154688 5857918 complement(865973..866902) 1 NC_010287.1 hypothetical protein 866902 5857918 CTL0735 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654806.1 865973 R 471472 CDS YP_001654807.1 166154689 5858271 866990..869362 1 NC_010287.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 869362 pheT 5858271 pheT Chlamydia trachomatis 434/Bu phenylalanyl-tRNA synthetase subunit beta YP_001654807.1 866990 D 471472 CDS YP_001654808.1 166154690 5858430 869359..870324 1 NC_010287.1 hypothetical protein 870324 5858430 CTL0737 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654808.1 869359 D 471472 CDS YP_001654809.1 166154691 5857907 870343..870855 1 NC_010287.1 putative DNA methyltransferase 870855 5857907 CTL0738 Chlamydia trachomatis 434/Bu putative DNA methyltransferase YP_001654809.1 870343 D 471472 CDS YP_001654810.1 166154692 5858412 complement(870852..872588) 1 NC_010287.1 oligonucleotide transport system permease 872588 oppC2 5858412 oppC2 Chlamydia trachomatis 434/Bu oligonucleotide transport system permease YP_001654810.1 870852 R 471472 CDS YP_001654811.1 166154693 5858208 complement(872590..874005) 1 NC_010287.1 oligopeptide transport system membrane permease 874005 oppB2 5858208 oppB2 Chlamydia trachomatis 434/Bu oligopeptide transport system membrane permease YP_001654811.1 872590 R 471472 CDS YP_001654812.1 166154694 5858433 complement(874050..876140) 1 NC_010287.1 oligopeptide transport system, binding protein 876140 oppA4 5858433 oppA4 Chlamydia trachomatis 434/Bu oligopeptide transport system, binding protein YP_001654812.1 874050 R 471472 CDS YP_001654813.1 166154695 5858440 complement(876746..877477) 1 NC_010287.1 hypothetical protein 877477 5858440 CTL0742 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654813.1 876746 R 471472 CDS YP_001654814.1 166154696 5858417 complement(877639..878292) 1 NC_010287.1 hypothetical protein 878292 5858417 CTL0743 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654814.1 877639 R 471472 CDS YP_001654815.1 166154697 5857925 878760..879125 1 NC_010287.1 hypothetical protein 879125 5857925 CTL0744 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654815.1 878760 D 471472 CDS YP_001654816.1 166154698 5858325 complement(879104..880102) 1 NC_010287.1 hypothetical protein 880102 5858325 CTL0745 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654816.1 879104 R 471472 CDS YP_001654817.1 166154699 5858375 complement(880259..881203) 1 NC_010287.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 881203 hemH 5858375 hemH Chlamydia trachomatis 434/Bu ferrochelatase YP_001654817.1 880259 R 471472 CDS YP_001654818.1 166154700 5858836 complement(881225..882010) 1 NC_010287.1 glutamine-binding protein 882010 fliY 5858836 fliY Chlamydia trachomatis 434/Bu glutamine-binding protein YP_001654818.1 881225 R 471472 CDS YP_001654819.1 166154701 5858031 complement(882056..882628) 1 NC_010287.1 methyltransferase 882628 5858031 CTL0748 Chlamydia trachomatis 434/Bu methyltransferase YP_001654819.1 882056 R 471472 CDS YP_001654820.1 166154702 5858383 complement(882625..883359) 1 NC_010287.1 putative phosphohydrolase 883359 5858383 CTL0749 Chlamydia trachomatis 434/Bu putative phosphohydrolase YP_001654820.1 882625 R 471472 CDS YP_001654821.1 166154703 5858237 complement(883448..884773) 1 NC_010287.1 glucose-1-phosphate adenylyltransferase 884773 glgC 5858237 glgC Chlamydia trachomatis 434/Bu glucose-1-phosphate adenylyltransferase YP_001654821.1 883448 R 471472 CDS YP_001654822.1 166154704 5858661 884965..885216 1 NC_010287.1 hypothetical protein 885216 5858661 CTL0751 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654822.1 884965 D 471472 CDS YP_001654823.1 166154705 5858390 complement(885226..886620) 1 NC_010287.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 886620 rho 5858390 rho Chlamydia trachomatis 434/Bu transcription termination factor Rho YP_001654823.1 885226 R 471472 CDS YP_001654824.1 166154706 5858507 complement(886617..887225) 1 NC_010287.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 887225 coaE 5858507 coaE Chlamydia trachomatis 434/Bu dephospho-CoA kinase YP_001654824.1 886617 R 471472 CDS YP_001654825.1 166154707 5858230 complement(887219..889819) 1 NC_010287.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 889819 polA 5858230 polA Chlamydia trachomatis 434/Bu DNA polymerase I YP_001654825.1 887219 R 471472 CDS YP_001654826.1 166154708 5858706 complement(889836..890831) 1 NC_010287.1 exported protease IV 890831 sohB 5858706 sohB Chlamydia trachomatis 434/Bu exported protease IV YP_001654826.1 889836 R 471472 CDS YP_001654827.1 166154709 5858780 complement(890971..892593) 1 NC_010287.1 putative nucleotide transport protein 892593 5858780 CTL0756 Chlamydia trachomatis 434/Bu putative nucleotide transport protein YP_001654827.1 890971 R 471472 CDS YP_001654828.1 166154710 5858351 complement(892805..893311) 1 NC_010287.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 893311 pgsA 5858351 pgsA Chlamydia trachomatis 434/Bu CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001654828.1 892805 R 471472 CDS YP_001654829.1 166154711 5858269 complement(893707..893856) 1 NC_010287.1 hypothetical protein 893856 5858269 CTL0758 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654829.1 893707 R 471472 CDS YP_001654830.1 166154712 5858405 893825..895243 1 NC_010287.1 unwinds double stranded DNA; replicative DNA helicase 895243 dnaB 5858405 dnaB Chlamydia trachomatis 434/Bu replicative DNA helicase YP_001654830.1 893825 D 471472 CDS YP_001654831.1 166154713 5858651 895538..897370 1 NC_010287.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 897370 gidA 5858651 gidA Chlamydia trachomatis 434/Bu tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_001654831.1 895538 D 471472 CDS YP_001654832.1 166154714 5858485 897360..898061 1 NC_010287.1 lipoate-protein ligase A 898061 lplA 5858485 lplA Chlamydia trachomatis 434/Bu lipoate-protein ligase A YP_001654832.1 897360 D 471472 CDS YP_001654833.1 166154715 5858308 complement(898118..898543) 1 NC_010287.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 898543 ndk 5858308 ndk Chlamydia trachomatis 434/Bu nucleoside diphosphate kinase YP_001654833.1 898118 R 471472 CDS YP_001654834.1 166154716 5857995 complement(898703..899305) 1 NC_010287.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 899305 ruvA 5857995 ruvA Chlamydia trachomatis 434/Bu Holliday junction DNA helicase RuvA YP_001654834.1 898703 R 471472 CDS YP_001654835.1 166154717 5858100 complement(899325..899837) 1 NC_010287.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 899837 ruvC 5858100 ruvC Chlamydia trachomatis 434/Bu Holliday junction resolvase YP_001654835.1 899325 R 471472 CDS YP_001654836.1 166154718 5858704 complement(899945..900394) 1 NC_010287.1 hypothetical protein 900394 5858704 CTL0765 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654836.1 899945 R 471472 CDS YP_001654837.1 166154719 5858298 complement(900786..901652) 1 NC_010287.1 hypothetical protein 901652 5858298 CTL0766 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654837.1 900786 R 471472 CDS YP_001654838.1 166154720 5858421 complement(901663..902667) 1 NC_010287.1 glyceraldehyde 3-phosphate dehydrogenase 902667 gapA 5858421 gapA Chlamydia trachomatis 434/Bu glyceraldehyde 3-phosphate dehydrogenase YP_001654838.1 901663 R 471472 CDS YP_001654839.1 166154721 5858649 complement(902711..903136) 1 NC_010287.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 903136 rplQ 5858649 rplQ Chlamydia trachomatis 434/Bu 50S ribosomal protein L17 YP_001654839.1 902711 R 471472 CDS YP_001654840.1 166154722 5858545 complement(903145..904278) 1 NC_010287.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 904278 rpoA 5858545 rpoA Chlamydia trachomatis 434/Bu DNA-directed RNA polymerase subunit alpha YP_001654840.1 903145 R 471472 CDS YP_001654841.1 166154723 5858051 complement(904299..904697) 1 NC_010287.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 904697 rpsK 5858051 rpsK Chlamydia trachomatis 434/Bu 30S ribosomal protein S11 YP_001654841.1 904299 R 471472 CDS YP_001654842.1 166154724 5857992 complement(904719..905087) 1 NC_010287.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 905087 rpsM 5857992 rpsM Chlamydia trachomatis 434/Bu 30S ribosomal protein S13 YP_001654842.1 904719 R 471472 CDS YP_001654843.1 166154725 5857999 complement(905143..906516) 1 NC_010287.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 906516 secY 5857999 secY Chlamydia trachomatis 434/Bu preprotein translocase subunit SecY YP_001654843.1 905143 R 471472 CDS YP_001654844.1 166154726 5858342 complement(906539..906973) 1 NC_010287.1 late assembly protein; 50S ribosomal protein L15 906973 rplO 5858342 rplO Chlamydia trachomatis 434/Bu 50S ribosomal protein L15 YP_001654844.1 906539 R 471472 CDS YP_001654845.1 166154727 5858056 complement(906966..907463) 1 NC_010287.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 907463 rpsE 5858056 rpsE Chlamydia trachomatis 434/Bu 30S ribosomal protein S5 YP_001654845.1 906966 R 471472 CDS YP_001654846.1 166154728 5858024 complement(907478..907849) 1 NC_010287.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 907849 rplR 5858024 rplR Chlamydia trachomatis 434/Bu 50S ribosomal protein L18 YP_001654846.1 907478 R 471472 CDS YP_001654847.1 166154729 5858516 complement(907871..908422) 1 NC_010287.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 908422 rplF 5858516 rplF Chlamydia trachomatis 434/Bu 50S ribosomal protein L6 YP_001654847.1 907871 R 471472 CDS YP_001654848.1 166154730 5858635 complement(908450..908851) 1 NC_010287.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 908851 rpsH 5858635 rpsH Chlamydia trachomatis 434/Bu 30S ribosomal protein S8 YP_001654848.1 908450 R 471472 CDS YP_001654849.1 166154731 5858563 complement(908869..909411) 1 NC_010287.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 909411 rplE 5858563 rplE Chlamydia trachomatis 434/Bu 50S ribosomal protein L5 YP_001654849.1 908869 R 471472 CDS YP_001654850.1 166154732 5858588 complement(909413..909748) 1 NC_010287.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 909748 rplX 5858588 rplX Chlamydia trachomatis 434/Bu 50S ribosomal protein L24 YP_001654850.1 909413 R 471472 CDS YP_001654851.1 166154733 5858501 complement(909761..910129) 1 NC_010287.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 910129 rplN 5858501 rplN Chlamydia trachomatis 434/Bu 50S ribosomal protein L14 YP_001654851.1 909761 R 471472 CDS YP_001654852.1 166154734 5858543 complement(910146..910397) 1 NC_010287.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 910397 rpsQ 5858543 rpsQ Chlamydia trachomatis 434/Bu 30S ribosomal protein S17 YP_001654852.1 910146 R 471472 CDS YP_001654853.1 166154735 5858012 complement(910390..910608) 1 NC_010287.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 910608 rpmC 5858012 rpmC Chlamydia trachomatis 434/Bu 50S ribosomal protein L29 YP_001654853.1 910390 R 471472 CDS YP_001654854.1 166154736 5858529 complement(910610..911026) 1 NC_010287.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 911026 rplP 5858529 rplP Chlamydia trachomatis 434/Bu 50S ribosomal protein L16 YP_001654854.1 910610 R 471472 CDS YP_001654855.1 166154737 5858591 complement(911059..911733) 1 NC_010287.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 911733 rpsC 5858591 rpsC Chlamydia trachomatis 434/Bu 30S ribosomal protein S3 YP_001654855.1 911059 R 471472 CDS YP_001654856.1 166154738 5858697 complement(911743..912078) 1 NC_010287.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 912078 rplV 5858697 rplV Chlamydia trachomatis 434/Bu 50S ribosomal protein L22 YP_001654856.1 911743 R 471472 CDS YP_001654857.1 166154739 5858167 complement(912097..912363) 1 NC_010287.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 912363 rpsS 5858167 rpsS Chlamydia trachomatis 434/Bu 30S ribosomal protein S19 YP_001654857.1 912097 R 471472 CDS YP_001654858.1 166154740 5858775 complement(912369..913223) 1 NC_010287.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 913223 rplB 5858775 rplB Chlamydia trachomatis 434/Bu 50S ribosomal protein L2 YP_001654858.1 912369 R 471472 CDS YP_001654859.1 166154741 5858558 complement(913247..913582) 1 NC_010287.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 913582 rplW 5858558 rplW Chlamydia trachomatis 434/Bu 50S ribosomal protein L23 YP_001654859.1 913247 R 471472 CDS YP_001654860.1 166154742 5858492 complement(913598..914266) 1 NC_010287.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 914266 rplD 5858492 rplD Chlamydia trachomatis 434/Bu 50S ribosomal protein L4 YP_001654860.1 913598 R 471472 CDS YP_001654861.1 166154743 5858171 complement(914275..914940) 1 NC_010287.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 914940 rplC 5858171 rplC Chlamydia trachomatis 434/Bu 50S ribosomal protein L3 YP_001654861.1 914275 R 471472 CDS YP_001654862.1 166154744 5858628 complement(915375..916271) 1 NC_010287.1 hypothetical protein 916271 5858628 CTL0791 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654862.1 915375 R 471472 CDS YP_001654863.1 166154745 5858328 complement(916437..917387) 1 NC_010287.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 917387 fmt 5858328 fmt Chlamydia trachomatis 434/Bu methionyl-tRNA formyltransferase YP_001654863.1 916437 R 471472 CDS YP_001654864.1 166154746 5858767 complement(917377..918219) 1 NC_010287.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 918219 lpxA 5858767 lpxA Chlamydia trachomatis 434/Bu UDP-N-acetylglucosamine acyltransferase YP_001654864.1 917377 R 471472 CDS YP_001654865.1 166154747 5858310 complement(918231..918692) 1 NC_010287.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 918692 fabZ 5858310 fabZ Chlamydia trachomatis 434/Bu (3R)-hydroxymyristoyl-ACP dehydratase YP_001654865.1 918231 R 471472 CDS YP_001654866.1 166154748 5858634 complement(918689..919549) 1 NC_010287.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 919549 lpxC 5858634 lpxC Chlamydia trachomatis 434/Bu UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001654866.1 918689 R 471472 CDS YP_001654867.1 166154749 5858636 complement(919649..921277) 1 NC_010287.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 921277 lnt 5858636 lnt Chlamydia trachomatis 434/Bu apolipoprotein N-acyltransferase YP_001654867.1 919649 R 471472 CDS YP_001654868.1 166154750 5858685 complement(921341..921823) 1 NC_010287.1 acyl-CoA hydrolase 921823 5858685 CTL0797 Chlamydia trachomatis 434/Bu acyl-CoA hydrolase YP_001654868.1 921341 R 471472 CDS YP_001654869.1 166154751 5858322 complement(921959..922711) 1 NC_010287.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 922711 dnaQ2 5858322 dnaQ2 Chlamydia trachomatis 434/Bu DNA polymerase III subunit epsilon YP_001654869.1 921959 R 471472 CDS YP_001654870.1 166154752 5858689 complement(922715..923188) 1 NC_010287.1 putative nucleotide-binding protein 923188 5858689 CTL0799 Chlamydia trachomatis 434/Bu putative nucleotide-binding protein YP_001654870.1 922715 R 471472 CDS YP_001654871.1 166154753 5858319 complement(923167..923883) 1 NC_010287.1 hypothetical protein 923883 5858319 CTL0800 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654871.1 923167 R 471472 CDS YP_001654872.1 166154754 5858301 924605..924913 1 NC_010287.1 thioredoxin 924913 trxA 5858301 trxA Chlamydia trachomatis 434/Bu thioredoxin YP_001654872.1 924605 D 471472 CDS YP_001654873.1 166154755 5858798 complement(924963..925418) 1 NC_010287.1 SpoU family rRNA methylase 925418 5858798 CTL0802 Chlamydia trachomatis 434/Bu SpoU family rRNA methylase YP_001654873.1 924963 R 471472 CDS YP_001654874.1 166154756 5858373 complement(925434..926165) 1 NC_010287.1 peptidyl-prolyl cis-trans isomerase 926165 mip 5858373 mip Chlamydia trachomatis 434/Bu peptidyl-prolyl cis-trans isomerase YP_001654874.1 925434 R 471472 CDS YP_001654875.1 166154757 5858582 complement(926303..928051) 1 NC_010287.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 928051 aspS 5858582 aspS Chlamydia trachomatis 434/Bu aspartyl-tRNA synthetase YP_001654875.1 926303 R 471472 CDS YP_001654876.1 166154758 5858643 complement(928032..929318) 1 NC_010287.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 929318 hisS 5858643 hisS Chlamydia trachomatis 434/Bu histidyl-tRNA synthetase YP_001654876.1 928032 R 471472 CDS YP_001654877.1 166154759 5858832 929754..931124 1 NC_010287.1 putative sugar phosphate permease 931124 uhpC 5858832 uhpC Chlamydia trachomatis 434/Bu putative sugar phosphate permease YP_001654877.1 929754 D 471472 CDS YP_001654878.1 166154760 5858824 931138..934851 1 NC_010287.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 934851 dnaE 5858824 dnaE Chlamydia trachomatis 434/Bu DNA polymerase III subunit alpha YP_001654878.1 931138 D 471472 CDS YP_001654879.1 166154761 5858578 complement(935080..935949) 1 NC_010287.1 hypothetical protein 935949 5858578 CTL0808 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654879.1 935080 R 471472 CDS YP_001654880.1 166154762 5858224 936101..937057 1 NC_010287.1 note the tetratricopeptide repeat motifs; hypothetical protein 937057 5858224 CTL0809 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654880.1 936101 D 471472 CDS YP_001654881.1 166154763 5858393 937082..937666 1 NC_010287.1 hypothetical protein 937666 5858393 CTL0810 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654881.1 937082 D 471472 CDS YP_001654882.1 166154764 5858259 937653..938093 1 NC_010287.1 sigma regulatory factor-histidine kinase 938093 rsbW 5858259 rsbW Chlamydia trachomatis 434/Bu sigma regulatory factor-histidine kinase YP_001654882.1 937653 D 471472 CDS YP_001654883.1 166154765 5857949 complement(938100..938525) 1 NC_010287.1 hypothetical protein 938525 5857949 CTL0812 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654883.1 938100 R 471472 CDS YP_001654884.1 166154766 5858238 938633..939946 1 NC_010287.1 pseudo in SeroD intact in Sero A; D-alanyl-D-alanine carboxypeptidase 939946 dacC 5858238 dacC Chlamydia trachomatis 434/Bu D-alanyl-D-alanine carboxypeptidase YP_001654884.1 938633 D 471472 CDS YP_001654885.1 166154767 5858452 940079..940486 1 NC_010287.1 hypothetical protein 940486 5858452 CTL0814 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654885.1 940079 D 471472 CDS YP_001654886.1 166154768 5858250 940483..941589 1 NC_010287.1 putative methyltransferase 941589 5858250 CTL0815 Chlamydia trachomatis 434/Bu putative methyltransferase YP_001654886.1 940483 D 471472 CDS YP_001654887.1 166154769 5858270 941739..942974 1 NC_010287.1 branched-chain amino acid transport system carrier protein 942974 brnQ 5858270 brnQ Chlamydia trachomatis 434/Bu branched-chain amino acid transport system carrier protein YP_001654887.1 941739 D 471472 CDS YP_001654888.1 166154770 5858630 943148..946747 1 NC_010287.1 helicase 946747 5858630 CTL0818 Chlamydia trachomatis 434/Bu helicase YP_001654888.1 943148 D 471472 CDS YP_001654889.1 166154771 5858220 946926..947405 1 NC_010287.1 hypothetical protein 947405 5858220 CTL0819 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654889.1 946926 D 471472 CDS YP_001654890.1 166154772 5857910 947614..949011 1 NC_010287.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 949011 lpdA 5857910 lpdA Chlamydia trachomatis 434/Bu dihydrolipoamide dehydrogenase YP_001654890.1 947614 D 471472 CDS YP_001654891.1 166154773 5858095 949008..949943 1 NC_010287.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 949943 lipA 5858095 lipA Chlamydia trachomatis 434/Bu lipoyl synthase YP_001654891.1 949008 D 471472 CDS YP_001654892.1 166154774 5858694 950047..951024 1 NC_010287.1 type III secretion system protein, membrane component 951024 sctJ 5858694 sctJ Chlamydia trachomatis 434/Bu type III secretion system protein, membrane component YP_001654892.1 950047 D 471472 CDS YP_001654893.1 166154775 5858163 951025..951861 1 NC_010287.1 hypothetical protein 951861 5858163 CTL0823 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654893.1 951025 D 471472 CDS YP_001654894.1 166154776 5858219 952137..952808 1 NC_010287.1 type III secretion system protein 952808 sctL 5858219 sctL Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654894.1 952137 D 471472 CDS YP_001654895.1 166154777 5858013 952821..953741 1 NC_010287.1 type III secretion system protein 953741 sctR 5858013 sctR Chlamydia trachomatis 434/Bu type III secretion system protein YP_001654895.1 952821 D 471472 CDS YP_001654896.1 166154778 5858765 953753..954037 1 NC_010287.1 type III secretion system, membrane protein 954037 sctS 5858765 sctS Chlamydia trachomatis 434/Bu type III secretion system, membrane protein YP_001654896.1 953753 D 471472 CDS YP_001654897.1 166154779 5858166 954044..954913 1 NC_010287.1 type III secretion system, membrane protein 954913 sctT 5858166 sctT Chlamydia trachomatis 434/Bu type III secretion system, membrane protein YP_001654897.1 954044 D 471472 CDS YP_001654898.1 166154780 5858188 complement(954992..955435) 1 NC_010287.1 hypothetical protein 955435 5858188 CTL0828 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654898.1 954992 R 471472 CDS YP_001654899.1 166154781 5858225 complement(955525..956517) 1 NC_010287.1 hypothetical protein 956517 5858225 CTL0829 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654899.1 955525 R 471472 CDS YP_001654900.1 166154782 5858344 complement(956523..957047) 1 NC_010287.1 hypothetical protein 957047 5858344 CTL0830 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654900.1 956523 R 471472 CDS YP_001654901.1 166154783 5858374 complement(957032..957487) 1 NC_010287.1 hypothetical protein 957487 5858374 CTL0831 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654901.1 957032 R 471472 CDS YP_001654902.1 166154784 5857928 complement(957471..957800) 1 NC_010287.1 general secretion pathway protein G 957800 gspG 5857928 gspG Chlamydia trachomatis 434/Bu general secretion pathway protein G YP_001654902.1 957471 R 471472 CDS YP_001654903.1 166154785 5858170 complement(957862..959037) 1 NC_010287.1 general secretion pathway protein F 959037 gspF 5858170 gspF Chlamydia trachomatis 434/Bu general secretion pathway protein F YP_001654903.1 957862 R 471472 CDS YP_001654904.1 166154786 5857994 complement(959049..960554) 1 NC_010287.1 general secretion pathway protein E 960554 gspE 5857994 gspE Chlamydia trachomatis 434/Bu general secretion pathway protein E YP_001654904.1 959049 R 471472 CDS YP_001654905.1 166154787 5858577 complement(960538..962820) 1 NC_010287.1 general secretion pathway protein D 962820 gspD 5858577 gspD Chlamydia trachomatis 434/Bu general secretion pathway protein D YP_001654905.1 960538 R 471472 CDS YP_001654906.1 166154788 5858749 complement(962821..964050) 1 NC_010287.1 hypothetical protein 964050 5858749 CTL0836 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654906.1 962821 R 471472 CDS YP_001654907.1 166154789 5858409 complement(964179..965249) 1 NC_010287.1 proline dipeptidase 965249 pepP 5858409 pepP Chlamydia trachomatis 434/Bu proline dipeptidase YP_001654907.1 964179 R 471472 CDS YP_001654908.1 166154790 5857954 complement(965260..966990) 1 NC_010287.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 966990 mutL 5857954 mutL Chlamydia trachomatis 434/Bu DNA mismatch repair protein YP_001654908.1 965260 R 471472 CDS YP_001654909.1 166154791 5858547 967270..967968 1 NC_010287.1 type III secretion chaperone (low calcium response protein H) 967968 scc2 5858547 scc2 Chlamydia trachomatis 434/Bu type III secretion chaperone (low calcium response protein H) YP_001654909.1 967270 D 471472 CDS YP_001654910.1 166154792 5857944 967985..968344 1 NC_010287.1 hypothetical protein 968344 5857944 CTL0840 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654910.1 967985 D 471472 CDS YP_001654911.1 166154793 5858247 968381..969844 1 NC_010287.1 putative type III secretion system membrane protein 969844 copB 5858247 copB Chlamydia trachomatis 434/Bu putative type III secretion system membrane protein YP_001654911.1 968381 D 471472 CDS YP_001654912.1 166154794 5858647 969875..971194 1 NC_010287.1 putative type III secretion system protein 971194 copD 5858647 copD Chlamydia trachomatis 434/Bu putative type III secretion system protein YP_001654912.1 969875 D 471472 CDS YP_001654913.1 166154795 5858034 complement(971272..972255) 1 NC_010287.1 putative integral membrane protein 972255 5858034 CTL0843 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654913.1 971272 R 471472 CDS YP_001654914.1 166154796 5858349 972560..974467 1 NC_010287.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 974467 thrS 5858349 thrS Chlamydia trachomatis 434/Bu threonyl-tRNA synthetase YP_001654914.1 972560 D 471472 CDS YP_001654915.1 166154797 5858400 974919..975686 1 NC_010287.1 ParA family chromosome partitioning ATPase 975686 minD 5858400 minD Chlamydia trachomatis 434/Bu ParA family chromosome partitioning ATPase YP_001654915.1 974919 D 471472 CDS YP_001654916.1 166154798 5858313 975691..976482 1 NC_010287.1 virulence plasmid protein pGP6-D-related protein 976482 gp6D 5858313 gp6D Chlamydia trachomatis 434/Bu virulence plasmid protein pGP6-D-related protein YP_001654916.1 975691 D 471472 CDS YP_001654917.1 166154799 5858337 976448..976999 1 NC_010287.1 hypothetical protein 976999 5858337 CTL0847 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654917.1 976448 D 471472 CDS YP_001654918.1 166154800 5858275 977178..978218 1 NC_010287.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 978218 trpS 5858275 trpS Chlamydia trachomatis 434/Bu tryptophanyl-tRNA synthetase YP_001654918.1 977178 D 471472 CDS YP_001654919.1 166154801 5858802 978243..980249 1 NC_010287.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 980249 uvrB 5858802 uvrB Chlamydia trachomatis 434/Bu excinuclease ABC subunit B YP_001654919.1 978243 D 471472 CDS YP_001654920.1 166154802 5858819 980411..981685 1 NC_010287.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 981685 eno 5858819 eno Chlamydia trachomatis 434/Bu phosphopyruvate hydratase YP_001654920.1 980411 D 471472 CDS YP_001654921.1 166154803 5858650 981813..983765 1 NC_010287.1 sigma regulatory family protein-PP2C phosphatase 983765 rbsU 5858650 rbsU Chlamydia trachomatis 434/Bu sigma regulatory family protein-PP2C phosphatase YP_001654921.1 981813 D 471472 CDS YP_001654922.1 166154804 5858554 983890..985698 1 NC_010287.1 hypothetical protein 985698 5858554 CTL0852 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654922.1 983890 D 471472 CDS YP_001654923.1 166154805 5858381 complement(985713..988577) 1 NC_010287.1 hypothetical protein 988577 5858381 CTL0853 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654923.1 985713 R 471472 CDS YP_001654924.1 166154806 5858334 complement(988674..989372) 1 NC_010287.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 989372 sdhB 5858334 sdhB Chlamydia trachomatis 434/Bu succinate dehydrogenase iron-sulfur subunit YP_001654924.1 988674 R 471472 CDS YP_001654925.1 166154807 5858174 complement(989451..991331) 1 NC_010287.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 991331 sdhA 5858174 sdhA Chlamydia trachomatis 434/Bu succinate dehydrogenase flavoprotein subunit YP_001654925.1 989451 R 471472 CDS YP_001654926.1 166154808 5858235 complement(992336..993127) 1 NC_010287.1 putative hydrolase 993127 5858235 CTL0858 Chlamydia trachomatis 434/Bu putative hydrolase YP_001654926.1 992336 R 471472 CDS YP_001654927.1 166154809 5858367 complement(993212..995290) 1 NC_010287.1 thiol:disulfide interchange protein 995290 dsdD 5858367 dsdD Chlamydia trachomatis 434/Bu thiol:disulfide interchange protein YP_001654927.1 993212 R 471472 CDS YP_001654928.1 166154810 5858614 995443..996141 1 NC_010287.1 macromolecule transporter 996141 exbB 5858614 exbB Chlamydia trachomatis 434/Bu macromolecule transporter YP_001654928.1 995443 D 471472 CDS YP_001654929.1 166154811 5858064 996138..996545 1 NC_010287.1 macromolecule transport protein 996545 5858064 CTL0861 Chlamydia trachomatis 434/Bu macromolecule transport protein YP_001654929.1 996138 D 471472 CDS YP_001654930.1 166154812 5858297 996548..997255 1 NC_010287.1 histone H1-I 997255 5858297 CTL0861A Chlamydia trachomatis 434/Bu histone H1-I YP_001654930.1 996548 D 471472 CDS YP_001654931.1 166154813 5858217 997255..998550 1 NC_010287.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 998550 tolB 5858217 tolB Chlamydia trachomatis 434/Bu translocation protein TolB YP_001654931.1 997255 D 471472 CDS YP_001654932.1 166154814 5858363 998547..999113 1 NC_010287.1 peptidoglycan-associated lipoprotein 999113 pal 5858363 pal Chlamydia trachomatis 434/Bu peptidoglycan-associated lipoprotein YP_001654932.1 998547 D 471472 CDS YP_001654933.1 166154815 5858445 999103..999705 1 NC_010287.1 putative soluble transglycosylase 999705 5858445 CTL0864 Chlamydia trachomatis 434/Bu putative soluble transglycosylase YP_001654933.1 999103 D 471472 CDS YP_001654934.1 166154816 5858278 999776..1000168 1 NC_010287.1 hypothetical protein 1000168 5858278 CTL0865 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654934.1 999776 D 471472 CDS YP_001654935.1 166154817 5857909 complement(1000165..1000752) 1 NC_010287.1 thioredoxin peroxidase 1000752 ahpC 5857909 ahpC Chlamydia trachomatis 434/Bu thioredoxin peroxidase YP_001654935.1 1000165 R 471472 CDS YP_001654936.1 166154818 5858350 complement(1000960..1002561) 1 NC_010287.1 60 kDa chaperonin GroEL2 1002561 groEL2 5858350 groEL2 Chlamydia trachomatis 434/Bu 60 kDa chaperonin GroEL2 YP_001654936.1 1000960 R 471472 CDS YP_001654937.1 166154819 5858121 complement(1002641..1003867) 1 NC_010287.1 hypothetical protein 1003867 5858121 CTL0868 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654937.1 1002641 R 471472 CDS YP_001654938.1 166154820 5858323 1004063..1004692 1 NC_010287.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1004692 5858323 CTL0869 Chlamydia trachomatis 434/Bu putative deoxyribonucleotide triphosphate pyrophosphatase YP_001654938.1 1004063 D 471472 CDS YP_001654939.1 166154821 5858299 complement(1004666..1004905) 1 NC_010287.1 hypothetical protein 1004905 5858299 CTL0870 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654939.1 1004666 R 471472 CDS YP_001654940.1 166154822 5858388 complement(1004890..1005579) 1 NC_010287.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1005579 ung 5858388 ung Chlamydia trachomatis 434/Bu uracil-DNA glycosylase YP_001654940.1 1004890 R 471472 CDS YP_001654941.1 166154823 5858826 1005660..1007564 1 NC_010287.1 DNA helicase 1007564 uvrD 5858826 uvrD Chlamydia trachomatis 434/Bu DNA helicase YP_001654941.1 1005660 D 471472 CDS YP_001654942.1 166154824 5858833 1007568..1008878 1 NC_010287.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1008878 rpoN 5858833 rpoN Chlamydia trachomatis 434/Bu RNA polymerase factor sigma-54 YP_001654942.1 1007568 D 471472 CDS YP_001654943.1 166154825 5858740 complement(1008986..1009681) 1 NC_010287.1 hypothetical protein 1009681 5858740 CTL0874 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654943.1 1008986 R 471472 CDS YP_001654944.1 166154826 5858369 complement(1009678..1010409) 1 NC_010287.1 hypothetical protein 1010409 5858369 CTL0875 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654944.1 1009678 R 471472 CDS YP_001654945.1 166154827 5858372 complement(1010381..1010860) 1 NC_010287.1 dihydrofolate reductase 1010860 folA 5858372 folA Chlamydia trachomatis 434/Bu dihydrofolate reductase YP_001654945.1 1010381 R 471472 CDS YP_001654946.1 166154828 5858627 complement(1010857..1012209) 1 NC_010287.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase 1012209 folP 5858627 folP Chlamydia trachomatis 434/Bu 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase YP_001654946.1 1010857 R 471472 CDS YP_001654947.1 166154829 5858156 complement(1012206..1012580) 1 NC_010287.1 dihydroneopterin aldolase 1012580 folX 5858156 folX Chlamydia trachomatis 434/Bu dihydroneopterin aldolase YP_001654947.1 1012206 R 471472 CDS YP_001654948.1 166154830 5858464 complement(1012599..1014314) 1 NC_010287.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 1014314 rpoD 5858464 rpoD Chlamydia trachomatis 434/Bu RNA polymerase sigma factor YP_001654948.1 1012599 R 471472 CDS YP_001654949.1 166154831 5858732 complement(1014463..1015752) 1 NC_010287.1 putative integral membrane protein 1015752 5858732 CTL0880 Chlamydia trachomatis 434/Bu putative integral membrane protein YP_001654949.1 1014463 R 471472 CDS YP_001654950.1 166154832 5858407 1016201..1016497 1 NC_010287.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1016497 rpsT 5858407 rpsT Chlamydia trachomatis 434/Bu 30S ribosomal protein S20 YP_001654950.1 1016201 D 471472 CDS YP_001654951.1 166154833 5857989 1016730..1017530 1 NC_010287.1 hypothetical protein 1017530 5857989 CTL0882 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654951.1 1016730 D 471472 CDS YP_001654952.1 166154834 5858241 complement(1017586..1020213) 1 NC_010287.1 hypothetical protein 1020213 5858241 CTL0883 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654952.1 1017586 R 471472 CDS YP_001654953.1 166154835 5858335 1020329..1022845 1 NC_010287.1 hypothetical protein 1022845 5858335 CTL0884 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654953.1 1020329 D 471472 CDS YP_001654954.1 166154836 5858222 complement(1022909..1025407) 1 NC_010287.1 hypothetical protein 1025407 5858222 CTL0885 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654954.1 1022909 R 471472 CDS YP_001654955.1 166154837 5858321 complement(1025635..1027590) 1 NC_010287.1 member of the CHLPN 76 kD protein family of proteins; hypothetical protein 1027590 5858321 CTL0886 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654955.1 1025635 R 471472 CDS YP_001654956.1 166154838 5858035 complement(1027698..1028999) 1 NC_010287.1 member of the CHLPN 76 kD protein family of proteins; hypothetical protein 1028999 5858035 CTL0887 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654956.1 1027698 R 471472 CDS YP_001654957.1 166154839 5858622 complement(1029243..1030826) 1 NC_010287.1 putative virulence protein 1030826 mviN 5858622 mviN Chlamydia trachomatis 434/Bu putative virulence protein YP_001654957.1 1029243 R 471472 CDS YP_001654958.1 166154840 5858592 1031026..1031892 1 NC_010287.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 1031892 nfo 5858592 nfo Chlamydia trachomatis 434/Bu endonuclease IV YP_001654958.1 1031026 D 471472 CDS YP_001654959.1 166154841 5858496 complement(1031988..1032617) 1 NC_010287.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1032617 rpsD 5858496 rpsD Chlamydia trachomatis 434/Bu 30S ribosomal protein S4 YP_001654959.1 1031988 R 471472 CDS YP_001654960.1 166154842 5858693 1033001..1033984 1 NC_010287.1 hypothetical protein 1033984 5858693 CTL0891 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654960.1 1033001 D 471472 CDS YP_001654961.1 166154843 5858624 complement(1034057..1034932) 1 NC_010287.1 dimethylallyltransferase 1034932 ispA 5858624 ispA Chlamydia trachomatis 434/Bu dimethylallyltransferase YP_001654961.1 1034057 R 471472 CDS YP_001654962.1 166154844 5858708 complement(1034988..1035605) 1 NC_010287.1 glucosamine-1-phosphate acetyltransferase 1035605 glmU 5858708 glmU Chlamydia trachomatis 434/Bu glucosamine-1-phosphate acetyltransferase YP_001654962.1 1034988 R 471472 CDS YP_001654963.1 166154845 5858490 complement(1035658..1036341) 1 NC_010287.1 transcriptional regulatory protein 1036341 5858490 CTL0894 Chlamydia trachomatis 434/Bu transcriptional regulatory protein YP_001654963.1 1035658 R 471472 CDS YP_001654964.1 166154846 5858664 1036521..1036775 1 NC_010287.1 hypothetical protein 1036775 5858664 CTL0895 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654964.1 1036521 D 471472 CDS YP_001654965.1 166154847 5858281 complement(1036956..1038545) 1 NC_010287.1 hypothetical protein 1038545 5858281 CTL0897 Chlamydia trachomatis 434/Bu hypothetical protein YP_001654965.1 1036956 R 471472 CDS