; retrieve-seq -v -org Chlamydia_trachomatis_D_LC_uid159879 -all -type downstream -feattype CDS -from 0 -to -2 -format wc -nocomment -label id,ctg,reg_left,reg_right,orf_strand -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Chlamydia_trachomatis_D_LC_uid159879/genome/Chlamydia_trachomatis_D_LC_uid159879_stop_codons.wc
; organism      	Chlamydia_trachomatis_D_LC_uid159879
; sequence type 	downstream
; feature type  	cds
; Output format 	wc
; Line width    	60
; relative coordinates
;        from    -2
;        to      0
;        size    3
; Queries       	878
;
YP_005811046.1|NC_017433.1|25|27|R	\TGA\
YP_005811047.1|NC_017433.1|1176|1178|R	\TGA\
YP_005811048.1|NC_017433.1|1916|1918|R	\TGA\
YP_005811049.1|NC_017433.1|2738|2740|R	\TAG\
YP_005811050.1|NC_017433.1|3116|3118|R	\TAA\
YP_005811051.1|NC_017433.1|3972|3974|R	\TAA\
YP_005811052.1|NC_017433.1|5021|5023|R	\TAA\
YP_005811053.1|NC_017433.1|7465|7467|D	\TAG\
YP_005811932.1|NC_017436.1|1174|1176|D	\TAA\
YP_005811933.1|NC_017436.1|1321|1323|R	\TAA\
YP_005811934.1|NC_017436.1|2094|2096|D	\TAG\
YP_005811935.1|NC_017436.1|3581|3583|D	\TAA\
YP_005811936.1|NC_017436.1|5049|5051|D	\TAA\
YP_005811937.1|NC_017436.1|5150|5152|R	\TAA\
YP_005811938.1|NC_017436.1|6369|6371|R	\TAA\
YP_005811939.1|NC_017436.1|8199|8201|D	\TAA\
YP_005811940.1|NC_017436.1|8217|8219|R	\TAG\
YP_005811941.1|NC_017436.1|9802|9804|D	\TAG\
YP_005811942.1|NC_017436.1|9791|9793|R	\TGA\
YP_005811943.1|NC_017436.1|11290|11292|R	\TGA\
YP_005811944.1|NC_017436.1|12543|12545|R	\TGA\
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YP_005811946.1|NC_017436.1|16023|16025|D	\TAA\
YP_005811947.1|NC_017436.1|16123|16125|R	\TAA\
YP_005811948.1|NC_017436.1|18362|18364|D	\TAA\
YP_005811949.1|NC_017436.1|19849|19851|D	\TAA\
YP_005811950.1|NC_017436.1|19913|19915|R	\TAG\
YP_005811951.1|NC_017436.1|24540|24542|D	\TGA\
YP_005811952.1|NC_017436.1|24601|24603|R	\TAA\
YP_005811953.1|NC_017436.1|26673|26675|R	\TAG\
YP_005811954.1|NC_017436.1|27816|27818|D	\TAG\
YP_005811955.1|NC_017436.1|29083|29085|D	\TAG\
YP_005811956.1|NC_017436.1|29939|29941|D	\TGA\
YP_005811957.1|NC_017436.1|31282|31284|D	\TAA\
YP_005811958.1|NC_017436.1|31623|31625|D	\TAG\
YP_005811959.1|NC_017436.1|32697|32699|D	\TAG\
YP_005811960.1|NC_017436.1|33088|33090|D	\TAG\
YP_005811961.1|NC_017436.1|33805|33807|D	\TAA\
YP_005811962.1|NC_017436.1|34413|34415|D	\TAG\
YP_005811963.1|NC_017436.1|34708|34710|D	\TAG\
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YP_005811967.1|NC_017436.1|41092|41094|R	\TAG\
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YP_005811970.1|NC_017436.1|44041|44043|D	\TGA\
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YP_005811972.1|NC_017436.1|45901|45903|D	\TAG\
YP_005811973.1|NC_017436.1|45965|45967|R	\TAA\
YP_005811974.1|NC_017436.1|48083|48085|R	\TAA\
YP_005811975.1|NC_017436.1|49523|49525|D	\TAG\
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YP_005811984.1|NC_017436.1|60100|60102|R	\TAA\
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YP_005811987.1|NC_017436.1|64725|64727|R	\TAA\
YP_005811988.1|NC_017436.1|65465|65467|R	\TAG\
YP_005811989.1|NC_017436.1|67425|67427|R	\TAA\
YP_005811990.1|NC_017436.1|68608|68610|R	\TAG\
YP_005811991.1|NC_017436.1|70880|70882|D	\TAA\
YP_005811992.1|NC_017436.1|71749|71751|D	\TAG\
YP_005811993.1|NC_017436.1|73146|73148|D	\TAG\
YP_005811994.1|NC_017436.1|74598|74600|D	\TAA\
YP_005811995.1|NC_017436.1|74661|74663|R	\TAG\
YP_005811996.1|NC_017436.1|76655|76657|R	\TAA\
YP_005811997.1|NC_017436.1|78592|78594|R	\TAA\
YP_005811998.1|NC_017436.1|80704|80706|D	\TAG\
YP_005811999.1|NC_017436.1|81476|81478|D	\TAG\
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YP_005812001.1|NC_017436.1|83778|83780|D	\TAA\
YP_005812002.1|NC_017436.1|84944|84946|D	\TAA\
YP_005812003.1|NC_017436.1|86999|87001|D	\TGA\
YP_005812004.1|NC_017436.1|88083|88085|R	\TAA\
YP_005812005.1|NC_017436.1|89180|89182|R	\TAA\
YP_005812006.1|NC_017436.1|91013|91015|D	\TAA\
YP_005812007.1|NC_017436.1|90993|90995|R	\TAG\
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YP_005812009.1|NC_017436.1|92894|92896|R	\TGA\
YP_005812010.1|NC_017436.1|93905|93907|D	\TAG\
YP_005812011.1|NC_017436.1|94258|94260|D	\TAG\
YP_005812012.1|NC_017436.1|95950|95952|D	\TGA\
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YP_005812015.1|NC_017436.1|97700|97702|R	\TAA\
YP_005812016.1|NC_017436.1|99565|99567|R	\TAG\
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YP_005812018.1|NC_017436.1|101570|101572|R	\TAA\
YP_005812019.1|NC_017436.1|102048|102050|R	\TAA\
YP_005812020.1|NC_017436.1|103331|103333|R	\TAA\
YP_005812021.1|NC_017436.1|105457|105459|R	\TAA\
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YP_005812023.1|NC_017436.1|107905|107907|R	\TGA\
YP_005812024.1|NC_017436.1|108767|108769|R	\TAA\
YP_005812025.1|NC_017436.1|109530|109532|R	\TAA\
YP_005812026.1|NC_017436.1|109908|109910|R	\TAG\
YP_005812027.1|NC_017436.1|112543|112545|R	\TAA\
YP_005812028.1|NC_017436.1|113965|113967|R	\TAG\
YP_005812029.1|NC_017436.1|116972|116974|D	\TGA\
YP_005812030.1|NC_017436.1|117337|117339|D	\TAA\
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YP_005812032.1|NC_017436.1|118395|118397|D	\TAA\
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YP_005812035.1|NC_017436.1|122420|122422|D	\TAG\
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YP_005812037.1|NC_017436.1|124600|124602|D	\TAA\
YP_005812038.1|NC_017436.1|125405|125407|D	\TAA\
YP_005812039.1|NC_017436.1|125420|125422|R	\TAG\
YP_005812040.1|NC_017436.1|126336|126338|R	\TAA\
YP_005812041.1|NC_017436.1|128008|128010|R	\TAA\
YP_005812042.1|NC_017436.1|128488|128490|R	\TAA\
YP_005812043.1|NC_017436.1|133218|133220|D	\TAG\
YP_005812044.1|NC_017436.1|134704|134706|D	\TAA\
YP_005812045.1|NC_017436.1|135359|135361|D	\TAA\
YP_005812046.1|NC_017436.1|135840|135842|D	\TAA\
YP_005812047.1|NC_017436.1|136159|136161|D	\TAG\
YP_005812048.1|NC_017436.1|136749|136751|D	\TAA\
YP_005812049.1|NC_017436.1|136917|136919|R	\TAG\
YP_005812050.1|NC_017436.1|137816|137818|R	\TAA\
YP_005812051.1|NC_017436.1|138841|138843|D	\TAG\
YP_005812052.1|NC_017436.1|139385|139387|D	\TAA\
YP_005812053.1|NC_017436.1|139892|139894|D	\TAG\
YP_005812054.1|NC_017436.1|141269|141271|D	\TAA\
YP_005812055.1|NC_017436.1|141944|141946|D	\TAA\
YP_005812056.1|NC_017436.1|142359|142361|D	\TAA\
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YP_005812059.1|NC_017436.1|144942|144944|D	\TGA\
YP_005812060.1|NC_017436.1|145640|145642|D	\TAA\
YP_005812061.1|NC_017436.1|145645|145647|R	\TAA\
YP_005812062.1|NC_017436.1|149058|149060|R	\TGA\
YP_005812063.1|NC_017436.1|150413|150415|R	\TGA\
YP_005812064.1|NC_017436.1|152082|152084|D	\TAA\
YP_005812065.1|NC_017436.1|152320|152322|D	\TAG\
YP_005812066.1|NC_017436.1|153222|153224|D	\TAA\
YP_005812067.1|NC_017436.1|154031|154033|D	\TAA\
YP_005812068.1|NC_017436.1|154895|154897|D	\TGA\
YP_005812069.1|NC_017436.1|155820|155822|D	\TAG\
YP_005812070.1|NC_017436.1|155819|155821|R	\TAG\
YP_005812071.1|NC_017436.1|157960|157962|D	\TAA\
YP_005812072.1|NC_017436.1|158590|158592|D	\TAA\
YP_005812073.1|NC_017436.1|159847|159849|D	\TAA\
YP_005812074.1|NC_017436.1|160691|160693|D	\TAA\
YP_005812075.1|NC_017436.1|161548|161550|D	\TAA\
YP_005812076.1|NC_017436.1|163578|163580|D	\TAA\
YP_005812077.1|NC_017436.1|165580|165582|D	\TGA\
YP_005812078.1|NC_017436.1|170027|170029|D	\TAA\
YP_005812079.1|NC_017436.1|170092|170094|R	\TAA\
YP_005812080.1|NC_017436.1|171815|171817|R	\TAA\
YP_005812081.1|NC_017436.1|173317|173319|D	\TAG\
YP_005812082.1|NC_017436.1|174864|174866|D	\TAG\
YP_005812083.1|NC_017436.1|175548|175550|D	\TAG\
YP_005812084.1|NC_017436.1|175701|175703|R	\TGA\
YP_005812085.1|NC_017436.1|178319|178321|R	\TAG\
YP_005812086.1|NC_017436.1|179439|179441|R	\TGA\
YP_005812087.1|NC_017436.1|180737|180739|R	\TAA\
YP_005812088.1|NC_017436.1|182075|182077|R	\TAA\
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YP_005812090.1|NC_017436.1|183812|183814|R	\TAA\
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YP_005812093.1|NC_017436.1|187316|187318|D	\TAG\
YP_005812094.1|NC_017436.1|187629|187631|D	\TAA\
YP_005812095.1|NC_017436.1|188549|188551|D	\TGA\
YP_005812096.1|NC_017436.1|190465|190467|D	\TGA\
YP_005812097.1|NC_017436.1|191852|191854|D	\TAG\
YP_005812098.1|NC_017436.1|192220|192222|D	\TAA\
YP_005812099.1|NC_017436.1|192560|192562|D	\TGA\
YP_005812100.1|NC_017436.1|194087|194089|D	\TAA\
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YP_005812106.1|NC_017436.1|198443|198445|D	\TAG\
YP_005812107.1|NC_017436.1|198472|198474|R	\TAA\
YP_005812108.1|NC_017436.1|198876|198878|R	\TGA\
YP_005812109.1|NC_017436.1|200950|200952|D	\TAG\
YP_005812110.1|NC_017436.1|200954|200956|R	\TAG\
YP_005812111.1|NC_017436.1|201610|201612|R	\TGA\
YP_005812112.1|NC_017436.1|202610|202612|R	\TAG\
YP_005812113.1|NC_017436.1|204450|204452|D	\TGA\
YP_005812114.1|NC_017436.1|206045|206047|D	\TAA\
YP_005812115.1|NC_017436.1|206478|206480|D	\TAG\
YP_005812116.1|NC_017436.1|208118|208120|D	\TAA\
YP_005812117.1|NC_017436.1|208913|208915|D	\TAA\
YP_005812118.1|NC_017436.1|208912|208914|R	\TAG\
YP_005812119.1|NC_017436.1|209798|209800|R	\TAG\
YP_005812120.1|NC_017436.1|210411|210413|R	\TAG\
YP_005812121.1|NC_017436.1|212936|212938|R	\TAG\
YP_005812122.1|NC_017436.1|215353|215355|R	\TAG\
YP_005812123.1|NC_017436.1|215850|215852|R	\TAA\
YP_005812124.1|NC_017436.1|216650|216652|R	\TAA\
YP_005812125.1|NC_017436.1|217895|217897|R	\TAG\
YP_005812126.1|NC_017436.1|219746|219748|R	\TAG\
YP_005812127.1|NC_017436.1|221379|221381|D	\TAA\
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YP_005812129.1|NC_017436.1|223991|223993|D	\TAA\
YP_005812130.1|NC_017436.1|225091|225093|D	\TAA\
YP_005812131.1|NC_017436.1|225968|225970|D	\TGA\
YP_005812132.1|NC_017436.1|226794|226796|D	\TAA\
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YP_005812134.1|NC_017436.1|228614|228616|D	\TAG\
YP_005812135.1|NC_017436.1|230059|230061|D	\TAA\
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YP_005812137.1|NC_017436.1|232597|232599|D	\TAA\
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YP_005812139.1|NC_017436.1|234473|234475|R	\TAA\
YP_005812140.1|NC_017436.1|235765|235767|R	\TGA\
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YP_005812142.1|NC_017436.1|239681|239683|R	\TAA\
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YP_005812145.1|NC_017436.1|241529|241531|R	\TAA\
YP_005812146.1|NC_017436.1|244520|244522|D	\TAA\
YP_005812147.1|NC_017436.1|245934|245936|D	\TAA\
YP_005812148.1|NC_017436.1|246792|246794|D	\TAG\
YP_005812149.1|NC_017436.1|247774|247776|D	\TAG\
YP_005812150.1|NC_017436.1|248794|248796|D	\TGA\
YP_005812151.1|NC_017436.1|249369|249371|D	\TAA\
YP_005812152.1|NC_017436.1|249368|249370|R	\TAG\
YP_005812153.1|NC_017436.1|250720|250722|R	\TGA\
YP_005812154.1|NC_017436.1|251251|251253|R	\TAG\
YP_005812155.1|NC_017436.1|252454|252456|R	\TAG\
YP_005812156.1|NC_017436.1|252988|252990|R	\TAA\
YP_005812157.1|NC_017436.1|253455|253457|R	\TAA\
YP_005812158.1|NC_017436.1|254101|254103|R	\TGA\
YP_005812159.1|NC_017436.1|254773|254775|R	\TAG\
YP_005812160.1|NC_017436.1|255513|255515|R	\TAA\
YP_005812161.1|NC_017436.1|257631|257633|D	\TAG\
YP_005812162.1|NC_017436.1|259287|259289|D	\TAG\
YP_005812163.1|NC_017436.1|259739|259741|D	\TAG\
YP_005812164.1|NC_017436.1|260352|260354|D	\TAA\
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YP_005812166.1|NC_017436.1|263638|263640|D	\TAA\
YP_005812167.1|NC_017436.1|263701|263703|R	\TAA\
YP_005812168.1|NC_017436.1|264303|264305|R	\TAA\
YP_005812169.1|NC_017436.1|265046|265048|R	\TGA\
YP_005812170.1|NC_017436.1|265989|265991|R	\TAA\
YP_005812171.1|NC_017436.1|267710|267712|D	\TAA\
YP_005812172.1|NC_017436.1|270463|270465|D	\TAG\
YP_005812173.1|NC_017436.1|271053|271055|D	\TAA\
YP_005812174.1|NC_017436.1|272145|272147|D	\TAA\
YP_005812175.1|NC_017436.1|272144|272146|R	\TAA\
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YP_005812429.1|NC_017436.1|578770|578772|D	\TAA\
YP_005812430.1|NC_017436.1|579461|579463|D	\TAA\
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YP_005812687.1|NC_017436.1|889657|889659|D	\TAG\
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YP_005812689.1|NC_017436.1|892075|892077|D	\TGA\
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YP_005812698.1|NC_017436.1|900301|900303|R	\TGA\
YP_005812699.1|NC_017436.1|903129|903131|D	\TAA\
YP_005812700.1|NC_017436.1|903942|903944|D	\TAA\
YP_005812701.1|NC_017436.1|905209|905211|D	\TGA\
YP_005812702.1|NC_017436.1|905658|905660|D	\TAA\
YP_005812703.1|NC_017436.1|905741|905743|R	\TAA\
YP_005812704.1|NC_017436.1|907624|907626|R	\TAG\
YP_005812705.1|NC_017436.1|909710|909712|D	\TAG\
YP_005812706.1|NC_017436.1|911331|911333|D	\TAA\
YP_005812707.1|NC_017436.1|912507|912509|D	\TGA\
YP_005812708.1|NC_017436.1|914644|914646|R	\TAG\
YP_005812709.1|NC_017436.1|915981|915983|D	\TGA\
YP_005812710.1|NC_017436.1|917793|917795|D	\TAA\
YP_005812711.1|NC_017436.1|917792|917794|R	\TAA\
YP_005812712.1|NC_017436.1|920587|920589|D	\TAA\
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YP_005812714.1|NC_017436.1|921042|921044|R	\TAA\
YP_005812715.1|NC_017436.1|921791|921793|D	\TAA\
YP_005812716.1|NC_017436.1|922120|922122|D	\TAG\
YP_005812717.1|NC_017436.1|922156|922158|R	\TAA\
YP_005812718.1|NC_017436.1|922778|922780|R	\TAA\
YP_005812719.1|NC_017436.1|923800|923802|D	\TAA\
YP_005812720.1|NC_017436.1|923847|923849|R	\TAA\
YP_005812721.1|NC_017436.1|925668|925670|R	\TAA\
YP_005812722.1|NC_017436.1|930249|930251|D	\TAA\
YP_005812723.1|NC_017436.1|930621|930623|D	\TAG\
YP_005812724.1|NC_017436.1|931239|931241|D	\TAG\
YP_005812725.1|NC_017436.1|931323|931325|R	\TAA\
YP_005812726.1|NC_017436.1|935401|935403|D	\TAG\
YP_005812727.1|NC_017436.1|935410|935412|R	\TAA\
YP_005812728.1|NC_017436.1|937966|937968|D	\TAA\
YP_005812729.1|NC_017436.1|938513|938515|D	\TAG\
YP_005812730.1|NC_017436.1|938989|938991|D	\TAA\
YP_005812731.1|NC_017436.1|939251|939253|D	\TAA\
YP_005812732.1|NC_017436.1|939775|939777|D	\TAA\
YP_005812733.1|NC_017436.1|940705|940707|D	\TAA\
YP_005812734.1|NC_017436.1|941010|941012|R	\TAA\
YP_005812735.1|NC_017436.1|942541|942543|R	\TAA\
YP_005812736.1|NC_017436.1|945468|945470|R	\TAA\
YP_005812737.1|NC_017436.1|946476|946478|R	\TAA\
YP_005812738.1|NC_017436.1|948887|948889|D	\TAA\
YP_005812739.1|NC_017436.1|949326|949328|D	\TAA\
YP_005812740.1|NC_017436.1|950314|950316|D	\TAG\
YP_005812741.1|NC_017436.1|955130|955132|D	\TAA\
YP_005812742.1|NC_017436.1|956167|956169|D	\TAG\
YP_005812743.1|NC_017436.1|956253|956255|R	\TAA\
YP_005812744.1|NC_017436.1|956573|956575|R	\TAA\
YP_005812745.1|NC_017436.1|958555|958557|D	\TAA\
YP_005812746.1|NC_017436.1|960386|960388|D	\TAA\
YP_005812747.1|NC_017436.1|961685|961687|D	\TAA\
YP_005812748.1|NC_017436.1|963060|963062|D	\TAG\
YP_005812749.1|NC_017436.1|963818|963820|D	\TAA\
YP_005812750.1|NC_017436.1|963918|963920|R	\TGA\
YP_005812751.1|NC_017436.1|966000|966002|D	\TAG\
YP_005812752.1|NC_017436.1|966890|966892|D	\TAG\
YP_005812753.1|NC_017436.1|968522|968524|D	\TAG\
YP_005812754.1|NC_017436.1|971646|971648|D	\TAA\
YP_005812755.1|NC_017436.1|971662|971664|R	\TAA\
YP_005812756.1|NC_017436.1|972949|972951|R	\TAG\
YP_005812757.1|NC_017436.1|977517|977519|D	\TAA\
YP_005812758.1|NC_017436.1|978595|978597|D	\TAG\
YP_005812759.1|NC_017436.1|979529|979531|D	\TAG\
YP_005812760.1|NC_017436.1|980229|980231|D	\TAG\
YP_005812761.1|NC_017436.1|980228|980230|R	\TAG\
YP_005812762.1|NC_017436.1|981236|981238|R	\TAA\
YP_005812763.1|NC_017436.1|982698|982700|D	\TAG\
YP_005812764.1|NC_017436.1|983293|983295|D	\TAG\
YP_005812765.1|NC_017436.1|984328|984330|D	\TAA\
YP_005812766.1|NC_017436.1|986614|986616|D	\TAA\
YP_005812767.1|NC_017436.1|986613|986615|R	\TAA\
YP_005812768.1|NC_017436.1|987716|987718|R	\TAG\
YP_005812769.1|NC_017436.1|989841|989843|D	\TGA\
YP_005812770.1|NC_017436.1|992743|992745|D	\TAA\
YP_005812771.1|NC_017436.1|992960|992962|R	\TAG\
YP_005812772.1|NC_017436.1|995076|995078|R	\TAG\
YP_005812773.1|NC_017436.1|996060|996062|D	\TGA\
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YP_005812775.1|NC_017436.1|997123|997125|R	\TAA\
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YP_005812780.1|NC_017436.1|1001303|1001305|R	\TAA\
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YP_005812782.1|NC_017436.1|1002729|1002731|R	\TAA\
YP_005812783.1|NC_017436.1|1005940|1005942|D	\TAG\
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YP_005812785.1|NC_017436.1|1009746|1009748|D	\TGA\
YP_005812786.1|NC_017436.1|1011665|1011667|D	\TAA\
YP_005812787.1|NC_017436.1|1012683|1012685|D	\TAA\
YP_005812788.1|NC_017436.1|1012737|1012739|R	\TAG\
YP_005812789.1|NC_017436.1|1014230|1014232|R	\TAG\
YP_005812790.1|NC_017436.1|1015777|1015779|R	\TAA\
YP_005812791.1|NC_017436.1|1016295|1016297|R	\TAA\
YP_005812792.1|NC_017436.1|1018604|1018606|R	\TAA\
YP_005812793.1|NC_017436.1|1020742|1020744|D	\TAA\
YP_005812794.1|NC_017436.1|1022973|1022975|D	\TAA\
YP_005812795.1|NC_017436.1|1022986|1022988|R	\TAG\
YP_005812796.1|NC_017436.1|1024216|1024218|R	\TAA\
YP_005812797.1|NC_017436.1|1025649|1025651|R	\TAG\
YP_005812798.1|NC_017436.1|1028546|1028548|R	\TAA\
YP_005812799.1|NC_017436.1|1034854|1034856|D	\TAA\
YP_005812800.1|NC_017436.1|1037935|1037937|D	\TAA\
YP_005812801.1|NC_017436.1|1039011|1039013|R	\TAG\

; Host name	nic37
; Job started	2012-05-05.012524
; Job done	2012-05-05.012524
; Seconds	0.27
;	user	0.27
;	system	0.05
;	cuser	0
;	csystem	0