-- dump date 20120504_141403 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_219502.1 15604718 884145 join(1041920..1042519,1..1176) 1 NC_000117.1 hypothetical protein 1176 884145 CT875 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219502.1 1041920 D 272561 CDS NP_219503.1 15604719 884027 complement(1321..1593) 1 NC_000117.1 hypothetical protein 1593 884027 CT001 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219503.1 1321 R 272561 CDS NP_219504.1 15604720 884067 1794..2096 1 NC_000117.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2096 gatC 884067 gatC Chlamydia trachomatis D/UW-3/CX aspartyl/glutamyl-tRNA amidotransferase subunit C NP_219504.1 1794 D 272561 CDS NP_219505.1 15604721 884087 2108..3583 1 NC_000117.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3583 gatA 884087 gatA Chlamydia trachomatis D/UW-3/CX aspartyl/glutamyl-tRNA amidotransferase subunit A NP_219505.1 2108 D 272561 CDS NP_219506.1 15604722 884084 3585..5051 1 NC_000117.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 5051 gatB 884084 gatB Chlamydia trachomatis D/UW-3/CX aspartyl/glutamyl-tRNA amidotransferase subunit B NP_219506.1 3585 D 272561 CDS NP_219507.1 15604723 884085 complement(5150..6241) 1 NC_000117.1 hypothetical protein 6241 884085 CT005 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219507.1 5150 R 272561 CDS NP_219508.1 15604724 884029 complement(6369..6938) 1 NC_000117.1 hypothetical protein 6938 884029 CT006 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219508.1 6369 R 272561 CDS NP_219509.1 15604725 884088 7251..8201 1 NC_000117.1 hypothetical protein 8201 884088 CT007 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219509.1 7251 D 272561 CDS NP_219510.1 15604726 884028 complement(8217..9119) 1 NC_000117.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 9119 rnhB_1 884028 rnhB_1 Chlamydia trachomatis D/UW-3/CX ribonuclease HIII NP_219510.1 8217 R 272561 CDS NP_219511.1 15604727 884053 9373..9804 1 NC_000117.1 transcriptional regulator 9804 yfgA 884053 yfgA Chlamydia trachomatis D/UW-3/CX transcriptional regulator NP_219511.1 9373 D 272561 CDS NP_219512.1 15604728 884050 complement(9791..11158) 1 NC_000117.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 11158 htrB 884050 htrB Chlamydia trachomatis D/UW-3/CX lipid A biosynthesis lauroyl acyltransferase NP_219512.1 9791 R 272561 CDS NP_219513.1 15604729 884048 complement(11290..12546) 1 NC_000117.1 hypothetical protein 12546 884048 CT011 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219513.1 11290 R 272561 CDS NP_219514.1 15604730 884042 complement(12543..13337) 1 NC_000117.1 hypothetical protein 13337 ybbP 884042 ybbP Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219514.1 12543 R 272561 CDS NP_219515.1 15604731 884038 13612..14952 1 NC_000117.1 cytochrome d ubiquinol oxidase subunit I 14952 cydA 884038 cydA Chlamydia trachomatis D/UW-3/CX cytochrome d ubiquinol oxidase subunit I NP_219515.1 13612 D 272561 CDS NP_219516.1 15604732 884035 14964..16025 1 NC_000117.1 cytochrome d ubiquinol oxidase subunit II 16025 cydB 884035 cydB Chlamydia trachomatis D/UW-3/CX cytochrome d ubiquinol oxidase subunit II NP_219516.1 14964 D 272561 CDS NP_219517.1 15604733 884095 complement(16123..17427) 1 NC_000117.1 ATPase 17427 phoH 884095 phoH Chlamydia trachomatis D/UW-3/CX ATPase NP_219517.1 16123 R 272561 CDS NP_219518.1 15604734 884090 17636..18364 1 NC_000117.1 hypothetical protein 18364 884090 CT016 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219518.1 17636 D 272561 CDS NP_219519.1 15604735 884091 18550..19851 1 NC_000117.1 hypothetical protein 19851 884091 CT017 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219519.1 18550 D 272561 CDS NP_219520.1 15604736 884096 complement(19913..20386) 1 NC_000117.1 hypothetical protein 20386 884096 CT018 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219520.1 19913 R 272561 CDS NP_219521.1 15604737 884097 21432..24542 1 NC_000117.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 24542 ileS 884097 ileS Chlamydia trachomatis D/UW-3/CX isoleucyl-tRNA synthetase NP_219521.1 21432 D 272561 CDS NP_219522.1 15604738 884162 complement(24601..26487) 1 NC_000117.1 signal peptidase I 26487 lepB 884162 lepB Chlamydia trachomatis D/UW-3/CX signal peptidase I NP_219522.1 24601 R 272561 CDS NP_219523.1 15604739 884158 complement(26673..27416) 1 NC_000117.1 hypothetical protein 27416 884158 CT021 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219523.1 26673 R 272561 CDS NP_219524.1 15604740 884156 27492..27818 1 NC_000117.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B 27818 rpmE2 884156 rpmE2 Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L31 type B NP_219524.1 27492 D 272561 CDS NP_219525.1 15604741 884175 28006..29085 1 NC_000117.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 29085 prfA 884175 prfA Chlamydia trachomatis D/UW-3/CX peptide chain release factor 1 NP_219525.1 28006 D 272561 CDS NP_219526.1 15604742 884173 29069..29941 1 NC_000117.1 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 29941 884173 CT024 Chlamydia trachomatis D/UW-3/CX N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase NP_219526.1 29069 D 272561 CDS NP_219527.1 15604743 884176 29938..31284 1 NC_000117.1 signal recognition particle, subunit FFH/SRP54 31284 ffh 884176 ffh Chlamydia trachomatis D/UW-3/CX signal recognition particle, subunit FFH/SRP54 NP_219527.1 29938 D 272561 CDS NP_219528.1 15604744 884177 31275..31625 1 NC_000117.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 31625 rpsP 884177 rpsP Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S16 NP_219528.1 31275 D 272561 CDS NP_219529.1 15604745 884073 31641..32699 1 NC_000117.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase 32699 trmD 884073 trmD Chlamydia trachomatis D/UW-3/CX tRNA (guanine-N(1)-)-methyltransferase NP_219529.1 31641 D 272561 CDS NP_219530.1 15604746 884154 32725..33090 1 NC_000117.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 33090 rplS 884154 rplS Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L19 NP_219530.1 32725 D 272561 CDS NP_219531.1 15604747 884152 33154..33807 1 NC_000117.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 33807 rnhB 884152 rnhB Chlamydia trachomatis D/UW-3/CX ribonuclease HII NP_219531.1 33154 D 272561 CDS NP_219532.1 15604748 884151 33798..34415 1 NC_000117.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 34415 gmk 884151 gmk Chlamydia trachomatis D/UW-3/CX guanylate kinase NP_219532.1 33798 D 272561 CDS NP_219533.1 15604749 884149 34408..34710 1 NC_000117.1 hypothetical protein 34710 884149 CT031 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219533.1 34408 D 272561 CDS NP_219534.1 15604750 884148 34710..36362 1 NC_000117.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 36362 metG 884148 metG Chlamydia trachomatis D/UW-3/CX methionyl-tRNA synthetase NP_219534.1 34710 D 272561 CDS NP_219535.1 15604751 884083 complement(36502..38742) 1 NC_000117.1 exodeoxyribonuclease V alpha chain 38742 recD_1 884083 recD_1 Chlamydia trachomatis D/UW-3/CX exodeoxyribonuclease V alpha chain NP_219535.1 36502 R 272561 CDS NP_219536.1 15604752 884132 complement(38990..40015) 1 NC_000117.1 cationic amino acid transporter 40015 ytfF 884132 ytfF Chlamydia trachomatis D/UW-3/CX cationic amino acid transporter NP_219536.1 38990 R 272561 CDS NP_219537.1 15604753 884082 40354..41127 1 NC_000117.1 biotin protein ligase 41127 884082 CT035 Chlamydia trachomatis D/UW-3/CX biotin protein ligase NP_219537.1 40354 D 272561 CDS NP_219538.1 15604754 884200 complement(41092..42303) 1 NC_000117.1 hypothetical protein 42303 884200 CT036 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219538.1 41092 R 272561 CDS NP_219539.1 15604755 884081 complement(42310..42666) 1 NC_000117.1 hypothetical protein 42666 884081 CT037 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219539.1 42310 R 272561 CDS NP_219540.1 15604756 884072 complement(42865..43215) 1 NC_000117.1 hypothetical protein 43215 884072 CT038 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219540.1 42865 R 272561 CDS NP_219541.1 15604757 884070 complement(43231..43803) 1 NC_000117.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 43803 dcd 884070 dcd Chlamydia trachomatis D/UW-3/CX deoxycytidine triphosphate deaminase NP_219541.1 43231 R 272561 CDS NP_219542.1 15604758 884066 43891..44043 1 NC_000117.1 hypothetical protein 44043 884066 CT039.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219542.1 43891 D 272561 CDS NP_219543.1 15604759 884059 44085..45089 1 NC_000117.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 45089 ruvB 884059 ruvB Chlamydia trachomatis D/UW-3/CX Holliday junction DNA helicase RuvB NP_219543.1 44085 D 272561 CDS NP_219544.1 15604760 884057 45091..45903 1 NC_000117.1 hypothetical protein 45903 884057 CT041 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219544.1 45091 D 272561 CDS NP_219545.1 15604761 884056 complement(45965..47965) 1 NC_000117.1 glycogen hydrolase (debranching) 47965 glgX 884056 glgX Chlamydia trachomatis D/UW-3/CX glycogen hydrolase (debranching) NP_219545.1 45965 R 272561 CDS NP_219546.1 15604762 884043 complement(48083..48586) 1 NC_000117.1 hypothetical protein 48586 884043 CT043 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219546.1 48083 R 272561 CDS NP_219547.1 15604763 884036 49052..49525 1 NC_000117.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 49525 ssb 884036 ssb Chlamydia trachomatis D/UW-3/CX single-stranded DNA-binding protein NP_219547.1 49052 D 272561 CDS NP_219548.1 15604764 884033 49866..51365 1 NC_000117.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 51365 pepA 884033 pepA Chlamydia trachomatis D/UW-3/CX leucyl aminopeptidase NP_219548.1 49866 D 272561 CDS NP_219549.1 15604765 884071 51504..52115 1 NC_000117.1 histone-like protein 2 52115 hctB 884071 hctB Chlamydia trachomatis D/UW-3/CX histone-like protein 2 NP_219549.1 51504 D 272561 CDS NP_219550.1 15604766 884074 52270..53214 1 NC_000117.1 hypothetical protein 53214 884074 CT047 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219550.1 52270 D 272561 CDS NP_219551.1 15604767 884037 53309..54022 1 NC_000117.1 SAM-dependent methyltransferase 54022 yraL 884037 yraL Chlamydia trachomatis D/UW-3/CX SAM-dependent methyltransferase NP_219551.1 53309 D 272561 CDS NP_219552.1 15604768 884046 54113..55585 1 NC_000117.1 hypothetical protein 55585 884046 CT049 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219552.1 54113 D 272561 CDS NP_219553.1 15604769 884049 complement(55644..57254) 1 NC_000117.1 hypothetical protein 57254 884049 CT050 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219553.1 55644 R 272561 CDS NP_219554.1 15604770 884040 complement(57358..58920) 1 NC_000117.1 hypothetical protein 58920 884040 CT051 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219554.1 57358 R 272561 CDS NP_219555.1 15604771 884044 complement(58974..60110) 1 NC_000117.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 60110 hemN_1 884044 hemN_1 Chlamydia trachomatis D/UW-3/CX coproporphyrinogen III oxidase NP_219555.1 58974 R 272561 CDS NP_219556.1 15604772 884052 complement(60100..60546) 1 NC_000117.1 hypothetical protein 60546 884052 CT053 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219556.1 60100 R 272561 CDS NP_219557.1 15604773 884178 60878..63595 1 NC_000117.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase subunit E1 63595 sucA 884178 sucA Chlamydia trachomatis D/UW-3/CX 2-oxoglutarate dehydrogenase subunit E1 NP_219557.1 60878 D 272561 CDS NP_219558.1 15604774 884047 63599..64696 1 NC_000117.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 64696 sucB_1 884047 sucB_1 Chlamydia trachomatis D/UW-3/CX dihydrolipoamide succinyltransferase NP_219558.1 63599 D 272561 CDS NP_219559.1 15604775 884174 complement(64725..65456) 1 NC_000117.1 hypothetical protein 65456 884174 CT056 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219559.1 64725 R 272561 CDS NP_219560.1 15604776 884045 complement(65465..67273) 1 NC_000117.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 67273 gcpE 884045 gcpE Chlamydia trachomatis D/UW-3/CX 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_219560.1 65465 R 272561 CDS NP_219561.1 15604777 884054 complement(67425..68528) 1 NC_000117.1 hypothetical protein 68528 884054 CT058 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219561.1 67425 R 272561 CDS NP_219562.1 15604778 884034 complement(68608..68883) 1 NC_000117.1 ferredoxin 68883 fer 884034 fer Chlamydia trachomatis D/UW-3/CX ferredoxin NP_219562.1 68608 R 272561 CDS NP_219563.1 15604779 884075 69065..70882 1 NC_000117.1 type III secretion system protein 70882 flhA 884075 flhA Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_219563.1 69065 D 272561 CDS NP_219564.1 15604780 884068 70990..71751 1 NC_000117.1 expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 71751 fliA 884068 fliA Chlamydia trachomatis D/UW-3/CX RNA polymerase sigma factor sigma-28 NP_219564.1 70990 D 272561 CDS NP_219565.1 15604781 884058 71910..73148 1 NC_000117.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 73148 tyrS 884058 tyrS Chlamydia trachomatis D/UW-3/CX tyrosyl-tRNA synthetase NP_219565.1 71910 D 272561 CDS NP_219566.1 15604782 884061 73158..74600 1 NC_000117.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 74600 gnd 884061 gnd Chlamydia trachomatis D/UW-3/CX 6-phosphogluconate dehydrogenase NP_219566.1 73158 D 272561 CDS NP_219567.1 15604783 884077 complement(74661..76469) 1 NC_000117.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 76469 lepA 884077 lepA Chlamydia trachomatis D/UW-3/CX GTP-binding protein LepA NP_219567.1 74661 R 272561 CDS NP_219568.1 15604784 884078 complement(76655..78241) 1 NC_000117.1 ADP/ATP translocase 78241 884078 CT065 Chlamydia trachomatis D/UW-3/CX ADP/ATP translocase NP_219568.1 76655 R 272561 CDS NP_219569.1 15604785 884076 complement(78592..79068) 1 NC_000117.1 hypothetical protein 79068 884076 CT066 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219569.1 78592 R 272561 CDS NP_219570.1 15604786 884065 79726..80706 1 NC_000117.1 solute protein binding family 80706 ytgA 884065 ytgA Chlamydia trachomatis D/UW-3/CX solute protein binding family NP_219570.1 79726 D 272561 CDS NP_219571.1 15604787 884107 80699..81478 1 NC_000117.1 rRNA methylase 81478 ytgB_1 884107 ytgB_1 Chlamydia trachomatis D/UW-3/CX rRNA methylase NP_219571.1 80699 D 272561 CDS NP_219572.1 15604788 884103 81479..82834 1 NC_000117.1 integral membrane protein 82834 ytgC 884103 ytgC Chlamydia trachomatis D/UW-3/CX integral membrane protein NP_219572.1 81479 D 272561 CDS NP_219573.1 15604789 884102 82824..83780 1 NC_000117.1 integral membrane protein 83780 ytgD 884102 ytgD Chlamydia trachomatis D/UW-3/CX integral membrane protein NP_219573.1 82824 D 272561 CDS NP_219574.1 15604790 884112 83807..84946 1 NC_000117.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 84946 yaeM 884112 yaeM Chlamydia trachomatis D/UW-3/CX 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_219574.1 83807 D 272561 CDS NP_219575.1 15604791 884110 85142..87001 1 NC_000117.1 metalloprotease 87001 yaeL 884110 yaeL Chlamydia trachomatis D/UW-3/CX metalloprotease NP_219575.1 85142 D 272561 CDS NP_219576.1 15604792 884108 complement(86948..87925) 1 NC_000117.1 OMP [leader (19) peptide] 87925 884108 CT073 Chlamydia trachomatis D/UW-3/CX OMP [leader (19) peptide] NP_219576.1 86948 R 272561 CDS NP_219577.1 15604793 884122 complement(88083..89180) 1 NC_000117.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 89180 recF 884122 recF Chlamydia trachomatis D/UW-3/CX recombination protein F NP_219577.1 88083 R 272561 CDS NP_219578.1 15604794 884117 complement(89180..90430) 1 NC_000117.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 90430 dnaN 884117 dnaN Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunit beta NP_219578.1 89180 R 272561 CDS NP_219579.1 15604795 884115 90560..91015 1 NC_000117.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 91015 smpB 884115 smpB Chlamydia trachomatis D/UW-3/CX SsrA-binding protein NP_219579.1 90560 D 272561 CDS NP_219580.1 15604796 884131 complement(90993..91943) 1 NC_000117.1 hypothetical protein 91943 yojL 884131 yojL Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219580.1 90993 R 272561 CDS NP_219581.1 15604797 884128 complement(91913..92776) 1 NC_000117.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 92776 folD 884128 folD Chlamydia trachomatis D/UW-3/CX bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_219581.1 91913 R 272561 CDS NP_219582.1 15604798 884124 complement(92894..93337) 1 NC_000117.1 hypothetical protein 93337 884124 CT079 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219582.1 92894 R 272561 CDS NP_219583.1 15604799 884137 93614..93907 1 NC_000117.1 late transcription unit B protein 93907 ltuB 884137 ltuB Chlamydia trachomatis D/UW-3/CX late transcription unit B protein NP_219583.1 93614 D 272561 CDS NP_219584.1 15604800 884135 93964..94260 1 NC_000117.1 hypothetical protein 94260 884135 CT081 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219584.1 93964 D 272561 CDS NP_219585.1 15604801 884133 94270..95952 1 NC_000117.1 hypothetical protein 95952 884133 CT082 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219585.1 94270 D 272561 CDS NP_219586.1 15604802 884142 95949..96431 1 NC_000117.1 hypothetical protein 96431 884142 CT083 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219586.1 95949 D 272561 CDS NP_219587.1 15604803 884141 complement(96445..97530) 1 NC_000117.1 phopholipase D 97530 884141 CT084 Chlamydia trachomatis D/UW-3/CX phopholipase D NP_219587.1 96445 R 272561 CDS NP_219588.1 15604804 884138 complement(97700..99439) 1 NC_000117.1 hypothetical protein 99439 884138 CT085 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219588.1 97700 R 272561 CDS NP_219589.1 15604805 884153 complement(99565..99834) 1 NC_000117.1 required for 70S ribosome assembly; 50S ribosomal protein L28 99834 rpmB 884153 rpmB Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L28 NP_219589.1 99565 R 272561 CDS NP_219590.1 15604806 884150 complement(99983..101566) 1 NC_000117.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 101566 malQ 884150 malQ Chlamydia trachomatis D/UW-3/CX 4-alpha-glucanotransferase NP_219590.1 99983 R 272561 CDS NP_219591.1 15604807 884143 complement(101570..102010) 1 NC_000117.1 secretion chaperone 102010 sycE 884143 sycE Chlamydia trachomatis D/UW-3/CX secretion chaperone NP_219591.1 101570 R 272561 CDS NP_219592.1 15604808 884160 complement(102048..103313) 1 NC_000117.1 low calcium response E 103313 lcrE 884160 lcrE Chlamydia trachomatis D/UW-3/CX low calcium response E NP_219592.1 102048 R 272561 CDS NP_219593.1 15604809 884159 complement(103331..105457) 1 NC_000117.1 low calcium response D 105457 lcrD 884159 lcrD Chlamydia trachomatis D/UW-3/CX low calcium response D NP_219593.1 103331 R 272561 CDS NP_219594.1 15604810 884155 complement(105457..106539) 1 NC_000117.1 type III secretion system protein 106539 yscU 884155 yscU Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_219594.1 105457 R 272561 CDS NP_219595.1 15604811 884164 106796..107896 1 NC_000117.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 107896 ychF 884164 ychF Chlamydia trachomatis D/UW-3/CX GTP-dependent nucleic acid-binding protein EngD NP_219595.1 106796 D 272561 CDS NP_219596.1 15604812 884163 complement(107905..108810) 1 NC_000117.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 108810 ribF 884163 ribF Chlamydia trachomatis D/UW-3/CX bifunctional riboflavin kinase/FMN adenylyltransferase NP_219596.1 107905 R 272561 CDS NP_219597.1 15604813 884161 complement(108767..109492) 1 NC_000117.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 109492 truB 884161 truB Chlamydia trachomatis D/UW-3/CX tRNA pseudouridine synthase B NP_219597.1 108767 R 272561 CDS NP_219598.1 15604814 884166 complement(109530..109901) 1 NC_000117.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 109901 rbfA 884166 rbfA Chlamydia trachomatis D/UW-3/CX ribosome-binding factor A NP_219598.1 109530 R 272561 CDS NP_219599.1 15604815 884165 complement(109908..112586) 1 NC_000117.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 112586 infB 884165 infB Chlamydia trachomatis D/UW-3/CX translation initiation factor IF-2 NP_219599.1 109908 R 272561 CDS NP_219600.1 15604816 884167 complement(112543..113847) 1 NC_000117.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 113847 nusA 884167 nusA Chlamydia trachomatis D/UW-3/CX transcription elongation factor NusA NP_219600.1 112543 R 272561 CDS NP_219601.1 15604817 884179 complement(113965..115674) 1 NC_000117.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 115674 rpsA 884179 rpsA Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S1 NP_219601.1 113965 R 272561 CDS NP_219602.1 15604818 884181 115919..116974 1 NC_000117.1 thioredoxin reductase 116974 trxB 884181 trxB Chlamydia trachomatis D/UW-3/CX thioredoxin reductase NP_219602.1 115919 D 272561 CDS NP_219603.1 15604819 884180 116980..117339 1 NC_000117.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 117339 acpS 884180 acpS Chlamydia trachomatis D/UW-3/CX 4'-phosphopantetheinyl transferase NP_219603.1 116980 D 272561 CDS NP_219604.1 15604820 884183 complement(117340..117801) 1 NC_000117.1 hypothetical protein 117801 884183 CT101 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219604.1 117340 R 272561 CDS NP_219605.1 15604821 884182 117936..118397 1 NC_000117.1 hypothetical protein 118397 884182 CT102 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219605.1 117936 D 272561 CDS NP_219606.1 15604822 884185 118432..119328 1 NC_000117.1 HAD family phosphatase/phosphatase 119328 884185 CT103 Chlamydia trachomatis D/UW-3/CX HAD family phosphatase/phosphatase NP_219606.1 118432 D 272561 CDS NP_219607.1 15604823 884118 complement(119318..120214) 1 NC_000117.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 120214 fabI 884118 fabI Chlamydia trachomatis D/UW-3/CX enoyl-ACP reductase NP_219607.1 119318 R 272561 CDS NP_219608.1 15604824 884093 120452..122422 1 NC_000117.1 hypothetical protein 122422 884093 CT105 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219608.1 120452 D 272561 CDS NP_219609.1 15604825 884116 complement(122535..123446) 1 NC_000117.1 pseudouridine synthetase 123446 yceC 884116 yceC Chlamydia trachomatis D/UW-3/CX pseudouridine synthetase NP_219609.1 122535 R 272561 CDS NP_219610.1 15604826 884111 123493..124602 1 NC_000117.1 A/G-specific adenine glycosylase 124602 mutY 884111 mutY Chlamydia trachomatis D/UW-3/CX A/G-specific adenine glycosylase NP_219610.1 123493 D 272561 CDS NP_219611.1 15604827 884109 124652..125407 1 NC_000117.1 Acr family transporter 125407 ybgI 884109 ybgI Chlamydia trachomatis D/UW-3/CX Acr family transporter NP_219611.1 124652 D 272561 CDS NP_219612.1 15604828 884157 complement(125420..126208) 1 NC_000117.1 hypothetical protein 126208 884157 CT109 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219612.1 125420 R 272561 CDS NP_219613.1 15604829 884030 complement(126336..127970) 1 NC_000117.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 127970 groEL 884030 groEL Chlamydia trachomatis D/UW-3/CX molecular chaperone GroEL NP_219613.1 126336 R 272561 CDS NP_219614.1 15604830 884062 complement(128008..128316) 1 NC_000117.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; molecular chaperone GroES 128316 groES 884062 groES Chlamydia trachomatis D/UW-3/CX molecular chaperone GroES NP_219614.1 128008 R 272561 CDS NP_219615.1 15604831 884032 complement(128488..130314) 1 NC_000117.1 oligoendopeptidase F 130314 pepF 884032 pepF Chlamydia trachomatis D/UW-3/CX oligoendopeptidase F NP_219615.1 128488 R 272561 CDS NP_219616.1 15604832 884031 130617..133220 1 NC_000117.1 Clp protease ATPase 133220 clpB 884031 clpB Chlamydia trachomatis D/UW-3/CX Clp protease ATPase NP_219616.1 130617 D 272561 CDS NP_219617.1 15604833 884055 133246..134706 1 NC_000117.1 hypothetical protein 134706 884055 CT114 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219617.1 133246 D 272561 CDS NP_219618.1 15604834 884060 134936..135361 1 NC_000117.1 inclusion membrane protein D 135361 884060 CT115 Chlamydia trachomatis D/UW-3/CX inclusion membrane protein D NP_219618.1 134936 D 272561 CDS NP_219619.1 15604835 884146 135444..135842 1 NC_000117.1 inclusion membrane protein E 135842 884146 CT116 Chlamydia trachomatis D/UW-3/CX inclusion membrane protein E NP_219619.1 135444 D 272561 CDS NP_219620.1 15604836 884080 135847..136161 1 NC_000117.1 inclusion membrane protein F 136161 884080 CT117 Chlamydia trachomatis D/UW-3/CX inclusion membrane protein F NP_219620.1 135847 D 272561 CDS NP_219621.1 15604837 884170 136248..136751 1 NC_000117.1 inclusion membrane protein G 136751 884170 CT118 Chlamydia trachomatis D/UW-3/CX inclusion membrane protein G NP_219621.1 136248 D 272561 CDS NP_219622.1 15604838 884147 complement(136917..137738) 1 NC_000117.1 inclusion membrane protein A 137738 incA 884147 incA Chlamydia trachomatis D/UW-3/CX inclusion membrane protein A NP_219622.1 136917 R 272561 CDS NP_219623.1 15604839 884168 complement(137816..138058) 1 NC_000117.1 hypothetical protein 138058 884168 CT120 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219623.1 137816 R 272561 CDS NP_219624.1 15604840 884169 138142..138843 1 NC_000117.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 138843 araD 884169 araD Chlamydia trachomatis D/UW-3/CX ribulose-phosphate 3-epimerase NP_219624.1 138142 D 272561 CDS NP_219625.1 15604841 884171 138830..139387 1 NC_000117.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 139387 efp_1 884171 efp_1 Chlamydia trachomatis D/UW-3/CX elongation factor P NP_219625.1 138830 D 272561 CDS NP_219626.1 15604842 884172 139400..139894 1 NC_000117.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 139894 accB 884172 accB Chlamydia trachomatis D/UW-3/CX acetyl-CoA carboxylase biotin carboxyl carrier protein subunit NP_219626.1 139400 D 272561 CDS NP_219627.1 15604843 884063 139898..141271 1 NC_000117.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 141271 accC 884063 accC Chlamydia trachomatis D/UW-3/CX acetyl-CoA carboxylase biotin carboxylase subunit NP_219627.1 139898 D 272561 CDS NP_219628.1 15604844 884106 141494..141946 1 NC_000117.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 141946 rplM 884106 rplM Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L13 NP_219628.1 141494 D 272561 CDS NP_219629.1 15604845 884121 141972..142361 1 NC_000117.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 142361 rpsI 884121 rpsI Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S9 NP_219629.1 141972 D 272561 CDS NP_219630.1 15604846 884101 complement(142409..143260) 1 NC_000117.1 polysaccharide hydrolase invasin repeat-containing protein 143260 ydhO 884101 ydhO Chlamydia trachomatis D/UW-3/CX polysaccharide hydrolase invasin repeat-containing protein NP_219630.1 142409 R 272561 CDS NP_219631.1 15604847 884113 complement(143356..144093) 1 NC_000117.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 144093 adk 884113 adk Chlamydia trachomatis D/UW-3/CX adenylate kinase NP_219631.1 143356 R 272561 CDS NP_219632.1 15604848 884130 144300..144944 1 NC_000117.1 amino acid ABC transporter ATPase 144944 glnP 884130 glnP Chlamydia trachomatis D/UW-3/CX amino acid ABC transporter ATPase NP_219632.1 144300 D 272561 CDS NP_219633.1 15604849 884094 144941..145642 1 NC_000117.1 amino acid ABC transporter ATPase 145642 glnQ 884094 glnQ Chlamydia trachomatis D/UW-3/CX amino acid ABC transporter ATPase NP_219633.1 144941 D 272561 CDS NP_219634.1 15604850 884114 complement(145645..149061) 1 NC_000117.1 hypothetical protein 149061 884114 CT131 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219634.1 145645 R 272561 CDS NP_219635.1 15604851 884120 complement(149058..150335) 1 NC_000117.1 hypothetical protein 150335 884120 CT132 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219635.1 149058 R 272561 CDS NP_219636.1 15604852 884100 complement(150413..151216) 1 NC_000117.1 rRNA methylase 151216 884100 CT133 Chlamydia trachomatis D/UW-3/CX rRNA methylase NP_219636.1 150413 R 272561 CDS NP_219637.1 15604853 884134 151671..152084 1 NC_000117.1 hypothetical protein 152084 884134 CT134 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219637.1 151671 D 272561 CDS NP_219638.1 15604854 884125 152143..153225 1 NC_000117.1 hypothetical protein 153225 884125 CT135 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219638.1 152143 D 272561 CDS NP_219639.1 15604855 884127 153315..154034 1 NC_000117.1 lysophospholipase esterase 154034 884127 CT136 Chlamydia trachomatis D/UW-3/CX lysophospholipase esterase NP_219639.1 153315 D 272561 CDS NP_219640.1 15604856 884086 154053..154898 1 NC_000117.1 SuA5 superfamily-related protein 154898 ywlC 884086 ywlC Chlamydia trachomatis D/UW-3/CX SuA5 superfamily-related protein NP_219640.1 154053 D 272561 CDS NP_219641.1 15604857 884126 154876..155823 1 NC_000117.1 microsomal dipeptidase 155823 884126 CT138 Chlamydia trachomatis D/UW-3/CX microsomal dipeptidase NP_219641.1 154876 D 272561 CDS NP_219642.1 15604858 884129 complement(155820..157100) 1 NC_000117.1 oligopeptide binding protein 157100 oppA_1 884129 oppA_1 Chlamydia trachomatis D/UW-3/CX oligopeptide binding protein NP_219642.1 155820 R 272561 CDS NP_219643.1 15604859 884136 157277..157963 1 NC_000117.1 hypothetical protein 157963 ypdP 884136 ypdP Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219643.1 157277 D 272561 CDS NP_219644.1 15604860 884089 158147..158593 1 NC_000117.1 protein translocase 158593 secA_1 884089 secA_1 Chlamydia trachomatis D/UW-3/CX protein translocase NP_219644.1 158147 D 272561 CDS NP_219645.1 15604861 884051 158993..159850 1 NC_000117.1 hypothetical protein 159850 884051 CT142 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219645.1 158993 D 272561 CDS NP_219646.1 15604862 884192 159852..160694 1 NC_000117.1 hypothetical protein 160694 884192 CT143 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219646.1 159852 D 272561 CDS NP_219647.1 15604863 884190 160694..161551 1 NC_000117.1 hypothetical protein 161551 884190 CT144 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219647.1 160694 D 272561 CDS NP_219648.1 15604864 884193 161737..163581 1 NC_000117.1 serine/threonine protein kinase 163581 884193 CT145 Chlamydia trachomatis D/UW-3/CX serine/threonine protein kinase NP_219648.1 161737 D 272561 CDS NP_219649.1 15604865 884189 163592..165583 1 NC_000117.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 165583 ligA 884189 ligA Chlamydia trachomatis D/UW-3/CX NAD-dependent DNA ligase LigA NP_219649.1 163592 D 272561 CDS NP_219650.1 15604866 884191 165681..170030 1 NC_000117.1 hypothetical protein 170030 884191 CT147 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219650.1 165681 D 272561 CDS NP_219651.1 15604867 884186 complement(170093..171616) 1 NC_000117.1 FAD-dependent monooxygenase 171616 mhpA 884186 mhpA Chlamydia trachomatis D/UW-3/CX FAD-dependent monooxygenase NP_219651.1 170093 R 272561 CDS NP_219652.1 15604868 884188 complement(171816..172763) 1 NC_000117.1 hydrolase 172763 884188 CT149 Chlamydia trachomatis D/UW-3/CX hydrolase NP_219652.1 171816 R 272561 CDS NP_219653.1 15604869 884187 173162..173320 1 NC_000117.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 173320 rpmG 884187 rpmG Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L33 NP_219653.1 173162 D 272561 CDS NP_219654.1 15604870 884139 173356..174867 1 NC_000117.1 hypothetical protein 174867 884139 CT151 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219654.1 173356 D 272561 CDS NP_219655.1 15604871 884184 174874..175551 1 NC_000117.1 ABC transporter ATPase 175551 ycfV 884184 ycfV Chlamydia trachomatis D/UW-3/CX ABC transporter ATPase NP_219655.1 174874 D 272561 CDS NP_219656.1 15604872 884123 complement(175702..178134) 1 NC_000117.1 MAC/perforin family protein 178134 884123 CT153 Chlamydia trachomatis D/UW-3/CX MAC/perforin family protein NP_219656.1 175702 R 272561 CDS NP_219657.1 15604873 884119 complement(178320..179471) 1 NC_000117.1 phospholipase D endonuclease 179471 884119 CT154 Chlamydia trachomatis D/UW-3/CX phospholipase D endonuclease NP_219657.1 178320 R 272561 CDS NP_219658.1 15604874 884098 complement(179440..180381) 1 NC_000117.1 phospholipase D endonuclease 180381 884098 CT155 Chlamydia trachomatis D/UW-3/CX phospholipase D endonuclease NP_219658.1 179440 R 272561 CDS NP_219659.1 15604875 884099 complement(180261..180602) 1 NC_000117.1 hypothetical protein 180602 884099 CT156 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219659.1 180261 R 272561 CDS NP_219660.1 15604876 884104 complement(180738..181952) 1 NC_000117.1 phospholipase D endonuclease 181952 884104 CT157 Chlamydia trachomatis D/UW-3/CX phospholipase D endonuclease NP_219660.1 180738 R 272561 CDS NP_219661.1 15604877 884105 complement(182076..182792) 1 NC_000117.1 phospholipase D endonuclease 182792 884105 CT158 Chlamydia trachomatis D/UW-3/CX phospholipase D endonuclease NP_219661.1 182076 R 272561 CDS NP_219662.1 15604878 884069 complement(182735..183667) 1 NC_000117.1 hypothetical protein 183667 884069 CT159 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219662.1 182735 R 272561 CDS NP_219663.1 15604879 884194 complement(183813..184316) 1 NC_000117.1 hypothetical protein 184316 884194 CT160 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219663.1 183813 R 272561 CDS NP_219664.1 15604880 884140 complement(184313..185053) 1 NC_000117.1 hypothetical protein 185053 884140 CT161 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219664.1 184313 R 272561 CDS NP_219665.1 15604881 884198 complement(185201..185440) 1 NC_000117.1 hypothetical protein 185440 884198 CT162 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219665.1 185201 R 272561 CDS NP_219666.1 15604882 884039 185673..187319 1 NC_000117.1 hypothetical protein 187319 884039 CT163 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219666.1 185673 D 272561 CDS NP_219667.1 15604883 884199 187372..187632 1 NC_000117.1 hypothetical protein 187632 884199 CT164 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219667.1 187372 D 272561 CDS NP_219668.1 15604884 884197 188106..188552 1 NC_000117.1 hypothetical protein 188552 884197 CT165 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219668.1 188106 D 272561 CDS NP_219669.1 15604885 884963 188549..190468 1 NC_000117.1 hypothetical protein 190468 884963 CT166 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219669.1 188549 D 272561 CDS NP_219670.1 15604886 884965 190524..191855 1 NC_000117.1 hypothetical protein 191855 884965 CT167 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219670.1 190524 D 272561 CDS NP_219671.1 15604887 884960 191921..192223 1 NC_000117.1 hypothetical protein 192223 884960 CT168 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219671.1 191921 D 272561 CDS NP_219672.1 15604888 884964 192279..192563 1 NC_000117.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 192563 trpR 884964 trpR Chlamydia trachomatis D/UW-3/CX Trp operon repressor NP_219672.1 192279 D 272561 CDS NP_219673.1 15604889 884961 192912..194090 1 NC_000117.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 194090 trpB 884961 trpB Chlamydia trachomatis D/UW-3/CX tryptophan synthase subunit beta NP_219673.1 192912 D 272561 CDS NP_219674.1 15604890 884962 194083..194844 1 NC_000117.1 tryptophan synthase subunit alpha 194844 trpA 884962 trpA Chlamydia trachomatis D/UW-3/CX tryptophan synthase subunit alpha NP_219674.1 194083 D 272561 CDS NP_219675.1 15604891 884959 complement(195091..195582) 1 NC_000117.1 hypothetical protein 195582 884959 CT172 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219675.1 195091 R 272561 CDS NP_219676.1 15604892 884958 complement(195610..195780) 1 NC_000117.1 hypothetical protein 195780 884958 CT172.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219676.1 195610 R 272561 CDS NP_219677.1 15604893 884957 complement(195848..196120) 1 NC_000117.1 hypothetical protein 196120 884957 CT173 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219677.1 195848 R 272561 CDS NP_219678.1 15604894 884956 complement(196207..196662) 1 NC_000117.1 hypothetical protein 196662 884956 CT174 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219678.1 196207 R 272561 CDS NP_219679.1 15604895 884954 196857..198446 1 NC_000117.1 oligopeptide binding protein permease 198446 oppA_2 884954 oppA_2 Chlamydia trachomatis D/UW-3/CX oligopeptide binding protein permease NP_219679.1 196857 D 272561 CDS NP_219680.1 15604896 884955 complement(198473..198880) 1 NC_000117.1 disulfide oxidoreductase 198880 dsbB 884955 dsbB Chlamydia trachomatis D/UW-3/CX disulfide oxidoreductase NP_219680.1 198473 R 272561 CDS NP_219681.1 15604897 884953 complement(198877..199593) 1 NC_000117.1 disulfide bond chaperone 199593 dsbG 884953 dsbG Chlamydia trachomatis D/UW-3/CX disulfide bond chaperone NP_219681.1 198877 R 272561 CDS NP_219682.1 15604898 884952 199739..200953 1 NC_000117.1 hypothetical protein 200953 884952 CT178 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219682.1 199739 D 272561 CDS NP_219683.1 15604899 884951 complement(200955..201467) 1 NC_000117.1 hypothetical protein 201467 884951 CT179 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219683.1 200955 R 272561 CDS NP_219684.1 15604900 884947 complement(201611..202303) 1 NC_000117.1 nitrate/iron ABC transporter ATPase 202303 tauB 884947 tauB Chlamydia trachomatis D/UW-3/CX nitrate/iron ABC transporter ATPase NP_219684.1 201611 R 272561 CDS NP_219685.1 15604901 884948 complement(202611..203321) 1 NC_000117.1 hypothetical protein 203321 884948 CT181 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219685.1 202611 R 272561 CDS NP_219686.1 15604902 884946 203689..204453 1 NC_000117.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 204453 kdsB 884946 kdsB Chlamydia trachomatis D/UW-3/CX 3-deoxy-manno-octulosonate cytidylyltransferase NP_219686.1 203689 D 272561 CDS NP_219687.1 15604903 884940 204429..206048 1 NC_000117.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 206048 pyrG 884940 pyrG Chlamydia trachomatis D/UW-3/CX CTP synthetase NP_219687.1 204429 D 272561 CDS NP_219688.1 15604904 884945 206035..206481 1 NC_000117.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase 206481 yqgF 884945 yqgF Chlamydia trachomatis D/UW-3/CX Holliday junction resolvase NP_219688.1 206035 D 272561 CDS NP_219689.2 161723223 884944 206598..208121 1 NC_000117.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 208121 zwf 884944 zwf Chlamydia trachomatis D/UW-3/CX glucose-6-phosphate 1-dehydrogenase NP_219689.2 206598 D 272561 CDS NP_219690.1 15604906 884943 208146..208916 1 NC_000117.1 catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 208916 devB 884943 devB Chlamydia trachomatis D/UW-3/CX 6-phosphogluconolactonase NP_219690.1 208146 D 272561 CDS NP_219691.1 15604907 884939 complement(208913..209785) 1 NC_000117.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 209785 dnaX_1 884939 dnaX_1 Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunit delta' NP_219691.1 208913 R 272561 CDS NP_219692.1 15604908 884942 complement(209799..210410) 1 NC_000117.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 210410 tmk 884942 tmk Chlamydia trachomatis D/UW-3/CX thymidylate kinase NP_219692.1 209799 R 272561 CDS NP_219693.1 15604909 884941 complement(210412..212922) 1 NC_000117.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 212922 gyrA_1 884941 gyrA_1 Chlamydia trachomatis D/UW-3/CX DNA gyrase subunit A NP_219693.1 210412 R 272561 CDS NP_219694.1 15604910 884937 complement(212937..215351) 1 NC_000117.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 215351 gyrB 884937 gyrB Chlamydia trachomatis D/UW-3/CX DNA gyrase subunit B NP_219694.1 212937 R 272561 CDS NP_219695.1 15604911 884929 complement(215354..215704) 1 NC_000117.1 hypothetical protein 215704 884929 CT191 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219695.1 215354 R 272561 CDS NP_219696.1 15604912 884938 complement(215851..216624) 1 NC_000117.1 hypothetical protein 216624 884938 CT192 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219696.1 215851 R 272561 CDS NP_219697.1 15604913 884936 complement(216651..217769) 1 NC_000117.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 217769 tgt 884936 tgt Chlamydia trachomatis D/UW-3/CX queuine tRNA-ribosyltransferase NP_219697.1 216651 R 272561 CDS NP_219698.1 15604914 884933 complement(217896..219308) 1 NC_000117.1 Mg2+ transporter 219308 mgtE 884933 mgtE Chlamydia trachomatis D/UW-3/CX Mg2+ transporter NP_219698.1 217896 R 272561 CDS NP_219699.1 15604915 884935 complement(219747..220838) 1 NC_000117.1 hypothetical protein 220838 884935 CT195 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219699.1 219747 R 272561 CDS NP_219700.1 15604916 884934 221062..221382 1 NC_000117.1 hypothetical protein 221382 884934 CT196 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219700.1 221062 D 272561 CDS NP_219701.1 15604917 884930 221458..222474 1 NC_000117.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 222474 gcp_1 884930 gcp_1 Chlamydia trachomatis D/UW-3/CX DNA-binding/iron metalloprotein/AP endonuclease NP_219701.1 221458 D 272561 CDS NP_219702.1 15604918 884932 222438..223994 1 NC_000117.1 oligopeptide binding protein 223994 oppA_3 884932 oppA_3 Chlamydia trachomatis D/UW-3/CX oligopeptide binding protein NP_219702.1 222438 D 272561 CDS NP_219703.1 15604919 884931 224153..225094 1 NC_000117.1 oligopeptide permease 225094 oppB_1 884931 oppB_1 Chlamydia trachomatis D/UW-3/CX oligopeptide permease NP_219703.1 224153 D 272561 CDS NP_219704.1 15604920 884927 225126..225971 1 NC_000117.1 oligopeptide permease 225971 oppC_1 884927 oppC_1 Chlamydia trachomatis D/UW-3/CX oligopeptide permease NP_219704.1 225126 D 272561 CDS NP_219705.1 15604921 884928 225964..226797 1 NC_000117.1 peptide ABC transporter ATPase 226797 oppD 884928 oppD Chlamydia trachomatis D/UW-3/CX peptide ABC transporter ATPase NP_219705.1 225964 D 272561 CDS NP_219706.1 15604922 884925 226812..227555 1 NC_000117.1 peptide ABC transporter ATPase 227555 oppF 884925 oppF Chlamydia trachomatis D/UW-3/CX peptide ABC transporter ATPase NP_219706.1 226812 D 272561 CDS NP_219707.1 15604923 884926 227862..228617 1 NC_000117.1 hypothetical protein 228617 884926 CT203 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219707.1 227862 D 272561 CDS NP_219708.1 15604924 884923 228647..230062 1 NC_000117.1 dicarboxylate translocator 230062 ybhI 884923 ybhI Chlamydia trachomatis D/UW-3/CX dicarboxylate translocator NP_219708.1 228647 D 272561 CDS NP_219709.1 15604925 884920 230082..231743 1 NC_000117.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 231743 pfkA_1 884920 pfkA_1 Chlamydia trachomatis D/UW-3/CX diphosphate--fructose-6-phosphate 1-phosphotransferase NP_219709.1 230082 D 272561 CDS NP_219710.1 15604926 884924 231752..232600 1 NC_000117.1 acyltransferase 232600 884924 CT206 Chlamydia trachomatis D/UW-3/CX acyltransferase NP_219710.1 231752 D 272561 CDS NP_219711.1 15604927 884922 232582..234228 1 NC_000117.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 234228 pfkA_2 884922 pfkA_2 Chlamydia trachomatis D/UW-3/CX diphosphate--fructose-6-phosphate 1-phosphotransferase NP_219711.1 232582 D 272561 CDS NP_219712.1 15604928 884918 complement(234474..235769) 1 NC_000117.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 235769 gseA 884918 gseA Chlamydia trachomatis D/UW-3/CX 3-deoxy-D-manno-octulosonic-acid transferase NP_219712.1 234474 R 272561 CDS NP_219713.1 15604929 884917 complement(235766..238225) 1 NC_000117.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 238225 leuS 884917 leuS Chlamydia trachomatis D/UW-3/CX leucyl-tRNA synthetase NP_219713.1 235766 R 272561 CDS NP_219714.1 15604930 884916 238422..239690 1 NC_000117.1 catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 239690 hemL 884916 hemL Chlamydia trachomatis D/UW-3/CX glutamate-1-semialdehyde aminotransferase NP_219714.1 238422 D 272561 CDS NP_219715.1 15604931 884914 complement(239682..240251) 1 NC_000117.1 hypothetical protein 240251 884914 CT211 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219715.1 239682 R 272561 CDS NP_219716.1 15604932 884915 complement(240271..240717) 1 NC_000117.1 hypothetical protein 240717 884915 CT212 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219716.1 240271 R 272561 CDS NP_219717.1 15604933 884912 complement(240707..241435) 1 NC_000117.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 241435 rpiA 884912 rpiA Chlamydia trachomatis D/UW-3/CX ribose-5-phosphate isomerase A NP_219717.1 240707 R 272561 CDS NP_219718.1 15604934 884910 complement(241530..243173) 1 NC_000117.1 hypothetical protein 243173 884910 CT214 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219718.1 241530 R 272561 CDS NP_219719.1 15604935 884913 243477..244523 1 NC_000117.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 244523 dhnA 884913 dhnA Chlamydia trachomatis D/UW-3/CX fructose-bisphosphate aldolase NP_219719.1 243477 D 272561 CDS NP_219720.1 15604936 884908 244537..245937 1 NC_000117.1 glutamate/gamma-aminobutyrate antiporter 245937 xasA 884908 xasA Chlamydia trachomatis D/UW-3/CX glutamate/gamma-aminobutyrate antiporter NP_219720.1 244537 D 272561 CDS NP_219721.1 15604937 884911 246091..246795 1 NC_000117.1 PP-loop superfamily ATPase 246795 ydaO 884911 ydaO Chlamydia trachomatis D/UW-3/CX PP-loop superfamily ATPase NP_219721.1 246091 D 272561 CDS NP_219722.1 15604938 884909 246926..247777 1 NC_000117.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 247777 surE 884909 surE Chlamydia trachomatis D/UW-3/CX stationary phase survival protein SurE NP_219722.1 246926 D 272561 CDS NP_219723.1 15604939 884907 247889..248797 1 NC_000117.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 248797 ubiA 884907 ubiA Chlamydia trachomatis D/UW-3/CX prenyltransferase NP_219723.1 247889 D 272561 CDS NP_219724.1 15604940 884904 248794..249372 1 NC_000117.1 aromatic acid decarboxylase 249372 ubiX 884904 ubiX Chlamydia trachomatis D/UW-3/CX aromatic acid decarboxylase NP_219724.1 248794 D 272561 CDS NP_219725.1 15604941 884906 complement(249369..250265) 1 NC_000117.1 hypothetical protein 250265 yqfU 884906 yqfU Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219725.1 249369 R 272561 CDS NP_219726.1 15604942 884903 complement(250554..250694) 1 NC_000117.1 hypothetical protein 250694 884903 CT221.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219726.1 250554 R 272561 CDS NP_219727.1 15604943 884897 complement(250721..251110) 1 NC_000117.1 hypothetical protein 251110 884897 CT222 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219727.1 250721 R 272561 CDS NP_219728.1 15604944 884901 complement(251252..252064) 1 NC_000117.1 hypothetical protein 252064 884901 CT223 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219728.1 251252 R 272561 CDS NP_219729.1 15604945 884900 complement(252455..252898) 1 NC_000117.1 hypothetical protein 252898 884900 CT224 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219729.1 252455 R 272561 CDS NP_219730.1 15604946 884898 complement(252989..253357) 1 NC_000117.1 hypothetical protein 253357 884898 CT225 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219730.1 252989 R 272561 CDS NP_219731.1 15604947 884899 complement(253456..253986) 1 NC_000117.1 hypothetical protein 253986 884899 CT226 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219731.1 253456 R 272561 CDS NP_219732.1 15604948 884896 complement(254102..254503) 1 NC_000117.1 hypothetical protein 254503 884896 CT227 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219732.1 254102 R 272561 CDS NP_219733.1 15604949 884894 complement(254774..255364) 1 NC_000117.1 hypothetical protein 255364 884894 CT228 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219733.1 254774 R 272561 CDS NP_219734.1 15604950 884895 complement(255514..256161) 1 NC_000117.1 hypothetical protein 256161 884895 CT229 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219734.1 255514 R 272561 CDS NP_219735.1 15604951 884893 256387..257634 1 NC_000117.1 neutral amino acid (glutamate) transporter 257634 884893 CT230 Chlamydia trachomatis D/UW-3/CX neutral amino acid (glutamate) transporter NP_219735.1 256387 D 272561 CDS NP_219736.1 15604952 884890 257818..259290 1 NC_000117.1 sodium-dependent amino acid transporter 259290 884890 CT231 Chlamydia trachomatis D/UW-3/CX sodium-dependent amino acid transporter NP_219736.1 257818 D 272561 CDS NP_219737.1 15604953 884892 259395..259742 1 NC_000117.1 inclusion membrane protein B 259742 incB 884892 incB Chlamydia trachomatis D/UW-3/CX inclusion membrane protein B NP_219737.1 259395 D 272561 CDS NP_219738.1 15604954 884891 259819..260355 1 NC_000117.1 inclusion membrane protein C 260355 incC 884891 incC Chlamydia trachomatis D/UW-3/CX inclusion membrane protein C NP_219738.1 259819 D 272561 CDS NP_219739.1 15604955 884888 260413..263199 1 NC_000117.1 hypothetical protein 263199 884888 CT234 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219739.1 260413 D 272561 CDS NP_219740.1 15604956 884889 263228..263641 1 NC_000117.1 CRP family transcriptional regulator 263641 884889 CT235 Chlamydia trachomatis D/UW-3/CX CRP family transcriptional regulator NP_219740.1 263228 D 272561 CDS NP_219741.1 15604957 884884 complement(263702..263935) 1 NC_000117.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 263935 acpP 884884 acpP Chlamydia trachomatis D/UW-3/CX acyl carrier protein NP_219741.1 263702 R 272561 CDS NP_219742.1 15604958 884887 complement(264304..265050) 1 NC_000117.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 265050 fabG 884887 fabG Chlamydia trachomatis D/UW-3/CX 3-ketoacyl-ACP reductase NP_219742.1 264304 R 272561 CDS NP_219743.1 15604959 884886 complement(265047..265973) 1 NC_000117.1 ACP S-malonyltransferase 265973 fabD 884886 fabD Chlamydia trachomatis D/UW-3/CX ACP S-malonyltransferase NP_219743.1 265047 R 272561 CDS NP_219744.1 15604960 884881 complement(265990..266973) 1 NC_000117.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-ACP synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase III 266973 fabH 884881 fabH Chlamydia trachomatis D/UW-3/CX 3-oxoacyl-ACP synthase III NP_219744.1 265990 R 272561 CDS NP_219745.1 15604961 884885 267111..267713 1 NC_000117.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 267713 recR 884885 recR Chlamydia trachomatis D/UW-3/CX recombination protein RecR NP_219745.1 267111 D 272561 CDS NP_219746.1 15604962 884882 268088..270466 1 NC_000117.1 hypothetical protein 270466 yaeT 884882 yaeT Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219746.1 268088 D 272561 CDS NP_219747.1 15604963 884883 270535..271056 1 NC_000117.1 hypothetical protein 271056 884883 CT242 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219747.1 270535 D 272561 CDS NP_219748.1 15604964 884880 271084..272148 1 NC_000117.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 272148 lpxD 884880 lpxD Chlamydia trachomatis D/UW-3/CX UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase NP_219748.1 271084 D 272561 CDS NP_219749.1 15604965 884879 complement(272145..273341) 1 NC_000117.1 hypothetical protein 273341 884879 CT244 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219749.1 272145 R 272561 CDS NP_219750.1 15604966 884877 273563..274585 1 NC_000117.1 pyruvate dehydrogenase E1 component subunit alpha 274585 pdhA 884877 pdhA Chlamydia trachomatis D/UW-3/CX pyruvate dehydrogenase E1 component subunit alpha NP_219750.1 273563 D 272561 CDS NP_219751.1 15604967 884876 274578..275564 1 NC_000117.1 pyruvate dehydrogenase E1 component beta subunit 275564 pdhB 884876 pdhB Chlamydia trachomatis D/UW-3/CX pyruvate dehydrogenase E1 component beta subunit NP_219751.1 274578 D 272561 CDS NP_219752.1 15604968 884878 275569..276858 1 NC_000117.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 276858 pdhC 884878 pdhC Chlamydia trachomatis D/UW-3/CX branched-chain alpha-keto acid dehydrogenase subunit E2 NP_219752.1 275569 D 272561 CDS NP_219753.1 15604969 884873 complement(276885..279329) 1 NC_000117.1 glycogen phosphorylase 279329 glgP 884873 glgP Chlamydia trachomatis D/UW-3/CX glycogen phosphorylase NP_219753.1 276885 R 272561 CDS NP_219754.1 15604970 884875 279485..279835 1 NC_000117.1 hypothetical protein 279835 884875 CT249 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219754.1 279485 D 272561 CDS NP_219755.1 15604971 884874 complement(279889..281259) 1 NC_000117.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 281259 dnaA 884874 dnaA Chlamydia trachomatis D/UW-3/CX chromosomal replication initiation protein NP_219755.1 279889 R 272561 CDS NP_219756.1 15604972 884867 complement(281336..283699) 1 NC_000117.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 283699 884867 CT251 Chlamydia trachomatis D/UW-3/CX inner membrane protein translocase component YidC NP_219756.1 281336 R 272561 CDS NP_219757.1 15604973 884872 complement(284009..284827) 1 NC_000117.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 284827 lgt 884872 lgt Chlamydia trachomatis D/UW-3/CX prolipoprotein diacylglyceryl transferase NP_219757.1 284009 R 272561 CDS NP_219758.1 15604974 884871 285078..285725 1 NC_000117.1 hypothetical protein 285725 884871 CT253 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219758.1 285078 D 272561 CDS NP_219759.1 15604975 884869 285729..286499 1 NC_000117.1 hypothetical protein 286499 884869 CT254 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219759.1 285729 D 272561 CDS NP_219760.1 15604976 884870 complement(286707..287090) 1 NC_000117.1 hypothetical protein 287090 884870 CT255 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219760.1 286707 R 272561 CDS NP_219761.1 15604977 884868 287279..288523 1 NC_000117.1 hypothetical protein 288523 884868 CT256 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219761.1 287279 D 272561 CDS NP_219762.1 15604978 884866 288513..289727 1 NC_000117.1 hypothetical protein 289727 884866 CT257 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219762.1 288513 D 272561 CDS NP_219763.1 15604979 884865 complement(289731..290855) 1 NC_000117.1 NifS family pyridoxal phosphate-dependent protein 290855 yhfO 884865 yhfO Chlamydia trachomatis D/UW-3/CX NifS family pyridoxal phosphate-dependent protein NP_219763.1 289731 R 272561 CDS NP_219764.1 15604980 884862 complement(290861..291607) 1 NC_000117.1 PP2C phosphatase 291607 884862 CT259 Chlamydia trachomatis D/UW-3/CX PP2C phosphatase NP_219764.1 290861 R 272561 CDS NP_219765.1 15604981 884859 291930..292421 1 NC_000117.1 hypothetical protein 292421 884859 CT260 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219765.1 291930 D 272561 CDS NP_219766.1 15604982 884864 292430..293128 1 NC_000117.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 293128 dnaQ_1 884864 dnaQ_1 Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunit epsilon NP_219766.1 292430 D 272561 CDS NP_219767.1 15604983 884863 293125..293895 1 NC_000117.1 hypothetical protein 293895 884863 CT262 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219767.1 293125 D 272561 CDS NP_219768.1 15604984 884860 293888..294478 1 NC_000117.1 hypothetical protein 294478 884860 CT263 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219768.1 293888 D 272561 CDS NP_219769.1 15604985 884861 complement(294499..296439) 1 NC_000117.1 transport ATP binding protein 296439 msbA 884861 msbA Chlamydia trachomatis D/UW-3/CX transport ATP binding protein NP_219769.1 294499 R 272561 CDS NP_219770.1 15604986 884858 complement(296405..297379) 1 NC_000117.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 297379 accA 884858 accA Chlamydia trachomatis D/UW-3/CX acetyl-CoA carboxylase carboxyltransferase subunit alpha NP_219770.1 296405 R 272561 CDS NP_219771.1 15604987 884855 complement(297512..298693) 1 NC_000117.1 hypothetical protein 298693 884855 CT266 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219771.1 297512 R 272561 CDS NP_219772.1 15604988 884857 complement(298811..299113) 1 NC_000117.1 integration host factor alpha-subunit 299113 ihfA 884857 ihfA Chlamydia trachomatis D/UW-3/CX integration host factor alpha-subunit NP_219772.1 298811 R 272561 CDS NP_219773.1 15604989 884856 complement(299333..300112) 1 NC_000117.1 N-acetylmuramoyl-L-alanine amidase 300112 amiA 884856 amiA Chlamydia trachomatis D/UW-3/CX N-acetylmuramoyl-L-alanine amidase NP_219773.1 299333 R 272561 CDS NP_219774.1 15604990 884854 complement(300027..301478) 1 NC_000117.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 301478 murE 884854 murE Chlamydia trachomatis D/UW-3/CX UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_219774.1 300027 R 272561 CDS NP_219775.1 15604991 884853 complement(301801..303744) 1 NC_000117.1 penicillin-binding protein 303744 pbp3 884853 pbp3 Chlamydia trachomatis D/UW-3/CX penicillin-binding protein NP_219775.1 301801 R 272561 CDS NP_219776.1 15604992 884850 complement(303731..304018) 1 NC_000117.1 hypothetical protein 304018 884850 CT271 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219776.1 303731 R 272561 CDS NP_219777.1 15604993 884852 complement(304018..304920) 1 NC_000117.1 S-adenosyl-methyltransferase MraW 304920 mraW 884852 mraW Chlamydia trachomatis D/UW-3/CX S-adenosyl-methyltransferase MraW NP_219777.1 304018 R 272561 CDS NP_219778.1 15604994 884848 305198..305764 1 NC_000117.1 hypothetical protein 305764 884848 CT273 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219778.1 305198 D 272561 CDS NP_219779.1 15604995 884851 305771..306190 1 NC_000117.1 hypothetical protein 306190 884851 CT274 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219779.1 305771 D 272561 CDS NP_219780.1 15604996 884847 306433..307800 1 NC_000117.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 307800 dnaA 884847 dnaA Chlamydia trachomatis D/UW-3/CX chromosomal replication initiation protein NP_219780.1 306433 D 272561 CDS NP_219781.1 15604997 884849 307839..308423 1 NC_000117.1 hypothetical protein 308423 884849 CT276 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219781.1 307839 D 272561 CDS NP_219782.1 15604998 884845 complement(308395..309054) 1 NC_000117.1 hypothetical protein 309054 884845 CT277 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219782.1 308395 R 272561 CDS NP_219783.1 15604999 884842 309056..310567 1 NC_000117.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 310567 nqr2 884842 nqr2 Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit B NP_219783.1 309056 D 272561 CDS NP_219784.1 15605000 884846 310571..311521 1 NC_000117.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 311521 nqr3 884846 nqr3 Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit C NP_219784.1 310571 D 272561 CDS NP_219785.1 15605001 884843 311511..312152 1 NC_000117.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 312152 nqr4 884843 nqr4 Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit D NP_219785.1 311511 D 272561 CDS NP_219786.1 15605002 884844 312158..312892 1 NC_000117.1 Na(+)-translocating NADH-quinone reductase subunit E 312892 nqr5 884844 nqr5 Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit E NP_219786.1 312158 D 272561 CDS NP_219787.1 15605003 884837 complement(312916..313269) 1 NC_000117.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 313269 gcsH 884837 gcsH Chlamydia trachomatis D/UW-3/CX glycine cleavage system protein H NP_219787.1 312916 R 272561 CDS NP_219788.1 15605004 884841 complement(313289..315385) 1 NC_000117.1 hypothetical protein 315385 884841 CT283 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219788.1 313289 R 272561 CDS NP_219789.1 15605005 884838 complement(315556..316980) 1 NC_000117.1 phospholipase D 316980 884838 CT284 Chlamydia trachomatis D/UW-3/CX phospholipase D NP_219789.1 315556 R 272561 CDS NP_219790.1 15605006 884840 complement(316986..317705) 1 NC_000117.1 lipoate-protein ligase A 317705 lplA_1 884840 lplA_1 Chlamydia trachomatis D/UW-3/CX lipoate-protein ligase A NP_219790.1 316986 R 272561 CDS NP_219791.1 15605007 884839 317970..320534 1 NC_000117.1 ClpC protease ATPase 320534 clpC 884839 clpC Chlamydia trachomatis D/UW-3/CX ClpC protease ATPase NP_219791.1 317970 D 272561 CDS NP_219792.1 15605008 884836 complement(320515..321591) 1 NC_000117.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 321591 mnmA 884836 mnmA Chlamydia trachomatis D/UW-3/CX tRNA-specific 2-thiouridylase MnmA NP_219792.1 320515 R 272561 CDS NP_219793.1 15605009 884832 321823..323514 1 NC_000117.1 hypothetical protein 323514 884832 CT288 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219793.1 321823 D 272561 CDS NP_219794.1 15605010 884831 complement(323601..324740) 1 NC_000117.1 hypothetical protein 324740 884831 CT289 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219794.1 323601 R 272561 CDS NP_219795.1 15605011 884835 complement(324798..325475) 1 NC_000117.1 PTS IIA protein + HTH DNA-binding domain 325475 ptsN_1 884835 ptsN_1 Chlamydia trachomatis D/UW-3/CX PTS IIA protein + HTH DNA-binding domain NP_219795.1 324798 R 272561 CDS NP_219796.1 15605012 884834 complement(325478..325954) 1 NC_000117.1 PTS IIA protein 325954 ptsN_2 884834 ptsN_2 Chlamydia trachomatis D/UW-3/CX PTS IIA protein NP_219796.1 325478 R 272561 CDS NP_219797.1 15605013 884833 complement(325956..326393) 1 NC_000117.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 326393 dut 884833 dut Chlamydia trachomatis D/UW-3/CX deoxyuridine 5'-triphosphate nucleotidohydrolase NP_219797.1 325956 R 272561 CDS NP_219798.1 15605014 884830 complement(326430..327356) 1 NC_000117.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 327356 accD 884830 accD Chlamydia trachomatis D/UW-3/CX acetyl-CoA carboxylase subunit beta NP_219798.1 326430 R 272561 CDS NP_219799.1 15605015 884829 complement(327428..328048) 1 NC_000117.1 superoxide dismutase 328048 sodM 884829 sodM Chlamydia trachomatis D/UW-3/CX superoxide dismutase NP_219799.1 327428 R 272561 CDS NP_219800.1 15605016 884828 complement(328180..329961) 1 NC_000117.1 phosphoglucomutase 329961 mrsA_1 884828 mrsA_1 Chlamydia trachomatis D/UW-3/CX phosphoglucomutase NP_219800.1 328180 R 272561 CDS NP_219801.1 15605017 884826 complement(330113..330580) 1 NC_000117.1 hypothetical protein 330580 884826 CT296 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219801.1 330113 R 272561 CDS NP_219802.1 15605018 884827 330689..331384 1 NC_000117.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 331384 rnc 884827 rnc Chlamydia trachomatis D/UW-3/CX ribonuclease III NP_219802.1 330689 D 272561 CDS NP_219803.1 15605019 884816 331368..332732 1 NC_000117.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 332732 radA 884816 radA Chlamydia trachomatis D/UW-3/CX DNA repair protein RadA NP_219803.1 331368 D 272561 CDS NP_219804.1 15605020 884823 332710..333435 1 NC_000117.1 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 333435 hemC 884823 hemC Chlamydia trachomatis D/UW-3/CX porphobilinogen deaminase NP_219804.1 332710 D 272561 CDS NP_219805.1 15605021 884824 333828..334175 1 NC_000117.1 hypothetical protein 334175 884824 CT300 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219805.1 333828 D 272561 CDS NP_219806.1 15605022 884825 complement(334228..337032) 1 NC_000117.1 PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase 337032 pknD 884825 pknD Chlamydia trachomatis D/UW-3/CX serine/threonine-protein kinase NP_219806.1 334228 R 272561 CDS NP_219807.1 15605023 884822 complement(337047..339866) 1 NC_000117.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 339866 valS 884822 valS Chlamydia trachomatis D/UW-3/CX valyl-tRNA synthetase NP_219807.1 337047 R 272561 CDS NP_219808.1 15605024 884821 complement(339993..340508) 1 NC_000117.1 hypothetical protein 340508 884821 CT303 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219808.1 339993 R 272561 CDS NP_219809.1 15605025 884820 complement(340429..340854) 1 NC_000117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 340854 atpK 884820 atpK Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit K NP_219809.1 340429 R 272561 CDS NP_219810.1 15605026 884819 complement(340917..342866) 1 NC_000117.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 342866 atpI 884819 atpI Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit I NP_219810.1 340917 R 272561 CDS NP_219811.1 15605027 884818 complement(342872..343483) 1 NC_000117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 343483 atpD 884818 atpD Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit D NP_219811.1 342872 R 272561 CDS NP_219812.1 15605028 884817 complement(343468..344784) 1 NC_000117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 344784 atpB 884817 atpB Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit B NP_219812.1 343468 R 272561 CDS NP_219813.1 15605029 884810 complement(344787..346562) 1 NC_000117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 346562 atpA 884810 atpA Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit A NP_219813.1 344787 R 272561 CDS NP_219814.1 15605030 884814 complement(346556..347356) 1 NC_000117.1 hypothetical protein 347356 884814 CT309 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219814.1 346556 R 272561 CDS NP_219815.1 15605031 884815 complement(347523..348149) 1 NC_000117.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 348149 atpE 884815 atpE Chlamydia trachomatis D/UW-3/CX V-type ATP synthase subunit E NP_219815.1 347523 R 272561 CDS NP_219816.1 15605032 884813 348258..348968 1 NC_000117.1 hypothetical protein 348968 884813 CT311 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219816.1 348258 D 272561 CDS NP_219817.1 15605033 884812 complement(348976..349347) 1 NC_000117.1 ferredoxin 349347 884812 CT312 Chlamydia trachomatis D/UW-3/CX ferredoxin NP_219817.1 348976 R 272561 CDS NP_219818.1 15605034 884811 complement(349392..350375) 1 NC_000117.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 350375 tal 884811 tal Chlamydia trachomatis D/UW-3/CX transaldolase B NP_219818.1 349392 R 272561 CDS NP_219819.1 15605035 884808 complement(350487..354677) 1 NC_000117.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 354677 rpoC 884808 rpoC Chlamydia trachomatis D/UW-3/CX DNA-directed RNA polymerase subunit beta' NP_219819.1 350487 R 272561 CDS NP_219820.1 15605036 884809 complement(354702..358460) 1 NC_000117.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 358460 rpoB 884809 rpoB Chlamydia trachomatis D/UW-3/CX DNA-directed RNA polymerase subunit beta NP_219820.1 354702 R 272561 CDS NP_219821.1 15605037 884807 complement(358821..359213) 1 NC_000117.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 359213 rplL 884807 rplL Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L7/L12 NP_219821.1 358821 R 272561 CDS NP_219822.1 15605038 884806 complement(359245..359763) 1 NC_000117.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 359763 rplJ 884806 rplJ Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L10 NP_219822.1 359245 R 272561 CDS NP_219823.1 15605039 884805 complement(359785..360483) 1 NC_000117.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 360483 rplA 884805 rplA Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L1 NP_219823.1 359785 R 272561 CDS NP_219824.1 15605040 884804 complement(360506..360931) 1 NC_000117.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 360931 rplK 884804 rplK Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L11 NP_219824.1 360506 R 272561 CDS NP_219825.1 15605041 884799 complement(361037..361585) 1 NC_000117.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 361585 nusG 884799 nusG Chlamydia trachomatis D/UW-3/CX transcription antitermination protein NusG NP_219825.1 361037 R 272561 CDS NP_219826.1 15605042 884803 complement(361589..361837) 1 NC_000117.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 361837 secE 884803 secE Chlamydia trachomatis D/UW-3/CX preprotein translocase subunit SecE NP_219826.1 361589 R 272561 CDS NP_219827.1 15605043 884801 complement(361980..363164) 1 NC_000117.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 363164 tuf 884801 tuf Chlamydia trachomatis D/UW-3/CX elongation factor Tu NP_219827.1 361980 R 272561 CDS NP_219828.1 15605044 884795 complement(363512..363733) 1 NC_000117.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 363733 infA 884795 infA Chlamydia trachomatis D/UW-3/CX translation initiation factor IF-1 NP_219828.1 363512 R 272561 CDS NP_219829.1 15605045 884798 364145..365056 1 NC_000117.1 hypothetical protein 365056 884798 CT324 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219829.1 364145 D 272561 CDS NP_219830.1 15605046 884797 365053..365499 1 NC_000117.1 hypothetical protein 365499 884797 CT325 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219830.1 365053 D 272561 CDS NP_219831.1 15605047 884796 complement(365551..367242) 1 NC_000117.1 hypothetical protein 367242 884796 CT326 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219831.1 365551 R 272561 CDS NP_219832.1 15605048 884792 complement(367229..367417) 1 NC_000117.1 hypothetical protein 367417 884792 CT326.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219832.1 367229 R 272561 CDS NP_219833.1 15605049 884793 complement(367607..367789) 1 NC_000117.1 hypothetical protein 367789 884793 CT326.2 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219833.1 367607 R 272561 CDS NP_219834.1 15605050 884791 complement(368509..369135) 1 NC_000117.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 369135 trpC 884791 trpC Chlamydia trachomatis D/UW-3/CX N-(5'-phosphoribosyl)anthranilate isomerase NP_219834.1 368509 R 272561 CDS NP_219835.1 15605051 884786 369332..370156 1 NC_000117.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 370156 tpiA 884786 tpiA Chlamydia trachomatis D/UW-3/CX triosephosphate isomerase NP_219835.1 369332 D 272561 CDS NP_219836.1 15605052 884790 370170..371720 1 NC_000117.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 371720 xseA 884790 xseA Chlamydia trachomatis D/UW-3/CX exodeoxyribonuclease VII large subunit NP_219836.1 370170 D 272561 CDS NP_219837.1 15605053 884789 371929..372201 1 NC_000117.1 hypothetical protein 372201 884789 CT330 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219837.1 371929 D 272561 CDS NP_219838.1 15605054 884788 372198..374120 1 NC_000117.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 374120 dxs 884788 dxs Chlamydia trachomatis D/UW-3/CX 1-deoxy-D-xylulose-5-phosphate synthase NP_219838.1 372198 D 272561 CDS NP_219839.1 15605055 884787 374217..375674 1 NC_000117.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 375674 pykF 884787 pykF Chlamydia trachomatis D/UW-3/CX pyruvate kinase NP_219839.1 374217 D 272561 CDS NP_219840.1 15605056 884785 375697..381057 1 NC_000117.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 381057 uvrA 884785 uvrA Chlamydia trachomatis D/UW-3/CX excinuclease ABC subunit A NP_219840.1 375697 D 272561 CDS NP_219841.1 15605057 884781 381275..382675 1 NC_000117.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma/tau 382675 dnaX_2 884781 dnaX_2 Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunits gamma/tau NP_219841.1 381275 D 272561 CDS NP_219842.1 15605058 884784 382668..382958 1 NC_000117.1 hypothetical protein 382958 884784 CT335 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219842.1 382668 D 272561 CDS NP_219843.1 15605059 884783 complement(382968..384683) 1 NC_000117.1 phosphoenolpyruvate-protein phosphotransferase 384683 ptsI 884783 ptsI Chlamydia trachomatis D/UW-3/CX phosphoenolpyruvate-protein phosphotransferase NP_219843.1 382968 R 272561 CDS NP_219844.1 15605060 884777 complement(384683..385012) 1 NC_000117.1 phosphocarrier protein HPr 385012 ptsH 884777 ptsH Chlamydia trachomatis D/UW-3/CX phosphocarrier protein HPr NP_219844.1 384683 R 272561 CDS NP_219845.1 15605061 884782 complement(385149..385610) 1 NC_000117.1 hypothetical protein 385610 884782 CT338 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219845.1 385149 R 272561 CDS NP_219846.1 15605062 884779 385894..387423 1 NC_000117.1 hypothetical protein 387423 884779 CT339 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219846.1 385894 D 272561 CDS NP_219847.1 15605063 884780 complement(387496..389532) 1 NC_000117.1 2-oxoisovalerate dehydrogenase subunit alpha 389532 pdhA/B 884780 pdhA/B Chlamydia trachomatis D/UW-3/CX 2-oxoisovalerate dehydrogenase subunit alpha NP_219847.1 387496 R 272561 CDS NP_219848.1 15605064 884775 complement(389567..390745) 1 NC_000117.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 390745 dnaJ 884775 dnaJ Chlamydia trachomatis D/UW-3/CX molecular chaperone DnaJ NP_219848.1 389567 R 272561 CDS NP_219849.1 15605065 884778 complement(390774..390950) 1 NC_000117.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 390950 rpsU 884778 rpsU Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S21 NP_219849.1 390774 R 272561 CDS NP_219850.1 15605066 884776 complement(391147..391779) 1 NC_000117.1 O-sialoglycoprotein endopeptidase 391779 884776 CT343 Chlamydia trachomatis D/UW-3/CX O-sialoglycoprotein endopeptidase NP_219850.1 391147 R 272561 CDS NP_219851.1 15605067 884768 392089..394548 1 NC_000117.1 ATP-dependent protease La 394548 lon 884768 lon Chlamydia trachomatis D/UW-3/CX ATP-dependent protease La NP_219851.1 392089 D 272561 CDS NP_219852.1 15605068 884773 394650..395015 1 NC_000117.1 hypothetical protein 395015 884773 CT345 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219852.1 394650 D 272561 CDS NP_219853.1 15605069 884774 395365..396279 1 NC_000117.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 396279 elaC 884774 elaC Chlamydia trachomatis D/UW-3/CX ribonuclease Z NP_219853.1 395365 D 272561 CDS NP_219854.1 15605070 884772 396341..397288 1 NC_000117.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 397288 xerC 884772 xerC Chlamydia trachomatis D/UW-3/CX site-specific tyrosine recombinase XerC NP_219854.1 396341 D 272561 CDS NP_219855.1 15605071 884771 397342..398928 1 NC_000117.1 ABC transporter ATPase 398928 yjjK 884771 yjjK Chlamydia trachomatis D/UW-3/CX ABC transporter ATPase NP_219855.1 397342 D 272561 CDS NP_219856.1 15605072 884769 398964..399554 1 NC_000117.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 399554 maf 884769 maf Chlamydia trachomatis D/UW-3/CX Maf-like protein NP_219856.1 398964 D 272561 CDS NP_219857.1 15605073 884770 399536..401236 1 NC_000117.1 hypothetical protein 401236 884770 CT350 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219857.1 399536 D 272561 CDS NP_219858.1 15605074 884766 401243..403336 1 NC_000117.1 hypothetical protein 403336 884766 CT351 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219858.1 401243 D 272561 CDS NP_219859.1 15605612 884678 complement(403410..403718) 1 NC_000117.1 preprotein translocase subunit SecG 403718 secG 884678 secG Chlamydia trachomatis D/UW-3/CX preprotein translocase subunit SecG NP_219859.1 403410 R 272561 CDS NP_219860.1 15605075 884767 403499..403804 1 NC_000117.1 hypothetical protein 403804 884767 CT352 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219860.1 403499 D 272561 CDS NP_219861.1 15605076 884763 complement(403874..404419) 1 NC_000117.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 404419 def 884763 def Chlamydia trachomatis D/UW-3/CX peptide deformylase NP_219861.1 403874 R 272561 CDS NP_219862.1 15605077 884765 complement(404694..405527) 1 NC_000117.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 405527 ksgA 884765 ksgA Chlamydia trachomatis D/UW-3/CX dimethyladenosine transferase NP_219862.1 404694 R 272561 CDS NP_219863.1 15605078 884764 complement(405543..406604) 1 NC_000117.1 hypothetical protein 406604 884764 CT355 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219863.1 405543 R 272561 CDS NP_219864.1 15605079 884761 complement(406909..409023) 1 NC_000117.1 hypothetical protein 409023 yyaL 884761 yyaL Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219864.1 406909 R 272561 CDS NP_219865.1 15605080 884762 complement(409341..409628) 1 NC_000117.1 hypothetical protein 409628 884762 CT357R Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219865.1 409341 R 272561 CDS NP_219866.1 15605081 884760 409480..409812 1 NC_000117.1 hypothetical protein 409812 884760 CT357 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219866.1 409480 D 272561 CDS NP_219867.1 15605082 884758 409838..410374 1 NC_000117.1 hypothetical protein 410374 884758 CT358 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219867.1 409838 D 272561 CDS NP_219868.1 15605083 884756 complement(410434..411024) 1 NC_000117.1 hypothetical protein 411024 884756 CT359 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219868.1 410434 R 272561 CDS NP_219869.1 15605084 884759 complement(411276..411902) 1 NC_000117.1 hypothetical protein 411902 884759 CT360 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219869.1 411276 R 272561 CDS NP_219870.1 15605085 884755 complement(412064..412924) 1 NC_000117.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 412924 dapA 884755 dapA Chlamydia trachomatis D/UW-3/CX dihydrodipicolinate synthase NP_219870.1 412064 R 272561 CDS NP_219871.1 15605086 884754 complement(412934..414229) 1 NC_000117.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 414229 lysC 884754 lysC Chlamydia trachomatis D/UW-3/CX aspartate kinase NP_219871.1 412934 R 272561 CDS NP_219872.1 15605087 884751 complement(414222..415226) 1 NC_000117.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 415226 asd 884751 asd Chlamydia trachomatis D/UW-3/CX aspartate-semialdehyde dehydrogenase NP_219872.1 414222 R 272561 CDS NP_219873.1 15605088 884753 complement(415236..415997) 1 NC_000117.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 415997 dapB 884753 dapB Chlamydia trachomatis D/UW-3/CX dihydrodipicolinate reductase NP_219873.1 415236 R 272561 CDS NP_219874.1 15605089 884752 complement(416174..417901) 1 NC_000117.1 hypothetical protein 417901 884752 CT365 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219874.1 416174 R 272561 CDS NP_219875.1 15605090 884747 418071..419393 1 NC_000117.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 419393 aroA 884747 aroA Chlamydia trachomatis D/UW-3/CX 3-phosphoshikimate 1-carboxyvinyltransferase NP_219875.1 418071 D 272561 CDS NP_219876.1 15605091 884749 419335..419889 1 NC_000117.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 419889 aroL 884749 aroL Chlamydia trachomatis D/UW-3/CX shikimate kinase NP_219876.1 419335 D 272561 CDS NP_219877.1 15605092 884745 419882..420955 1 NC_000117.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 420955 aroC 884745 aroC Chlamydia trachomatis D/UW-3/CX chorismate synthase NP_219877.1 419882 D 272561 CDS NP_219878.1 15605093 884750 420952..422073 1 NC_000117.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 422073 aroB 884750 aroB Chlamydia trachomatis D/UW-3/CX 3-dehydroquinate synthase NP_219878.1 420952 D 272561 CDS NP_219879.1 15605094 884748 422054..423490 1 NC_000117.1 AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein 423490 aroDE 884748 aroDE Chlamydia trachomatis D/UW-3/CX bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein NP_219879.1 422054 D 272561 CDS NP_219880.1 15605095 884746 423532..424317 1 NC_000117.1 hypothetical protein 424317 884746 CT371 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219880.1 423532 D 272561 CDS NP_219881.1 15605096 884743 424459..425787 1 NC_000117.1 hypothetical protein 425787 884743 CT372 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219881.1 424459 D 272561 CDS NP_219882.1 15605097 884742 425856..426443 1 NC_000117.1 hypothetical protein 426443 884742 CT373 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219882.1 425856 D 272561 CDS NP_219883.1 15605098 884744 426459..427910 1 NC_000117.1 arginine/ornithine antiporter 427910 arcD 884744 arcD Chlamydia trachomatis D/UW-3/CX arginine/ornithine antiporter NP_219883.1 426459 D 272561 CDS NP_219884.1 15605099 884739 428082..429140 1 NC_000117.1 D-amino acid dehydrogenase 429140 884739 CT375 Chlamydia trachomatis D/UW-3/CX D-amino acid dehydrogenase NP_219884.1 428082 D 272561 CDS NP_219885.1 15605100 884741 complement(429182..430162) 1 NC_000117.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 430162 mdhC 884741 mdhC Chlamydia trachomatis D/UW-3/CX malate dehydrogenase NP_219885.1 429182 R 272561 CDS NP_219886.1 15605101 884737 complement(430353..430493) 1 NC_000117.1 late transcription unit A protein 430493 ltuA 884737 ltuA Chlamydia trachomatis D/UW-3/CX late transcription unit A protein NP_219886.1 430353 R 272561 CDS NP_219887.1 15605102 884740 complement(430608..432185) 1 NC_000117.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 432185 pgi 884740 pgi Chlamydia trachomatis D/UW-3/CX glucose-6-phosphate isomerase NP_219887.1 430608 R 272561 CDS NP_219888.1 15605103 884738 complement(432298..433641) 1 NC_000117.1 GTP binding protein 433641 hflX 884738 hflX Chlamydia trachomatis D/UW-3/CX GTP binding protein NP_219888.1 432298 R 272561 CDS NP_219889.1 15605104 884736 complement(433654..434454) 1 NC_000117.1 metal-dependent hydrolase 434454 phnP 884736 phnP Chlamydia trachomatis D/UW-3/CX metal-dependent hydrolase NP_219889.1 433654 R 272561 CDS NP_219890.1 15605105 884734 complement(434483..435256) 1 NC_000117.1 arginine binding protein 435256 artJ 884734 artJ Chlamydia trachomatis D/UW-3/CX arginine binding protein NP_219890.1 434483 R 272561 CDS NP_219891.1 15605106 884735 complement(435325..436161) 1 NC_000117.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 436161 aroG 884735 aroG Chlamydia trachomatis D/UW-3/CX 3-deoxy-7-phosphoheptulonate synthase NP_219891.1 435325 R 272561 CDS NP_219892.1 15605107 884732 complement(436298..436489) 1 NC_000117.1 hypothetical protein 436489 884732 CT382.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219892.1 436298 R 272561 CDS NP_219893.1 15605108 884733 436672..437403 1 NC_000117.1 hypothetical protein 437403 884733 CT383 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219893.1 436672 D 272561 CDS NP_219894.1 15605109 884725 complement(437414..439033) 1 NC_000117.1 hypothetical protein 439033 884725 CT384 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219894.1 437414 R 272561 CDS NP_219895.1 15605110 884731 complement(439048..439383) 1 NC_000117.1 Hit family hydrolase 439383 ycfF 884731 ycfF Chlamydia trachomatis D/UW-3/CX Hit family hydrolase NP_219895.1 439048 R 272561 CDS NP_219896.1 15605111 884730 complement(439380..440249) 1 NC_000117.1 metal dependent hydrolase 440249 884730 CT386 Chlamydia trachomatis D/UW-3/CX metal dependent hydrolase NP_219896.1 439380 R 272561 CDS NP_219897.1 15605112 884726 440536..442611 1 NC_000117.1 hypothetical protein 442611 884726 CT387 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219897.1 440536 D 272561 CDS NP_219898.2 161723222 884729 complement(442625..442927) 1 NC_000117.1 hypothetical protein 442927 884729 CT388 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219898.2 442625 R 272561 CDS NP_219899.1 15605114 884728 443154..444380 1 NC_000117.1 hypothetical protein 444380 884728 CT389 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219899.1 443154 D 272561 CDS NP_219900.1 15605115 884727 444488..445672 1 NC_000117.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 445672 aspC 884727 aspC Chlamydia trachomatis D/UW-3/CX L,L-diaminopimelate aminotransferase NP_219900.1 444488 D 272561 CDS NP_219901.1 15605116 884724 445680..446687 1 NC_000117.1 hypothetical protein 446687 884724 CT391 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219901.1 445680 D 272561 CDS NP_219902.1 15605117 884721 complement(446693..447826) 1 NC_000117.1 hypothetical protein 447826 yprS 884721 yprS Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219902.1 446693 R 272561 CDS NP_219903.1 15605118 884722 448027..449772 1 NC_000117.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 449772 proS 884722 proS Chlamydia trachomatis D/UW-3/CX prolyl-tRNA synthetase NP_219903.1 448027 D 272561 CDS NP_219904.1 15605119 884723 449841..451019 1 NC_000117.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 451019 hrcA 884723 hrcA Chlamydia trachomatis D/UW-3/CX heat-inducible transcription repressor NP_219904.1 449841 D 272561 CDS NP_219905.1 15605120 884720 451016..451588 1 NC_000117.1 HSP-70 cofactor 451588 grpE 884720 grpE Chlamydia trachomatis D/UW-3/CX HSP-70 cofactor NP_219905.1 451016 D 272561 CDS NP_219906.1 15605121 884718 451614..453596 1 NC_000117.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 453596 dnaK 884718 dnaK Chlamydia trachomatis D/UW-3/CX molecular chaperone DnaK NP_219906.1 451614 D 272561 CDS NP_219907.1 15605122 884714 453889..455973 1 NC_000117.1 exoribonuclease II 455973 vacB 884714 vacB Chlamydia trachomatis D/UW-3/CX exoribonuclease II NP_219907.1 453889 D 272561 CDS NP_219908.1 15605123 884719 456229..456993 1 NC_000117.1 hypothetical protein 456993 884719 CT398 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219908.1 456229 D 272561 CDS NP_219909.1 15605124 884717 complement(457416..458402) 1 NC_000117.1 GutQ/KpsF family sugar-P isomerase 458402 yrbH 884717 yrbH Chlamydia trachomatis D/UW-3/CX GutQ/KpsF family sugar-P isomerase NP_219909.1 457416 R 272561 CDS NP_219910.1 15605125 884716 complement(458434..459600) 1 NC_000117.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 459600 sucB_2 884716 sucB_2 Chlamydia trachomatis D/UW-3/CX branched-chain alpha-keto acid dehydrogenase subunit E2 NP_219910.1 458434 R 272561 CDS NP_219911.1 15605126 884712 complement(459846..461084) 1 NC_000117.1 glutamate symport 461084 gltT 884712 gltT Chlamydia trachomatis D/UW-3/CX glutamate symport NP_219911.1 459846 R 272561 CDS NP_219912.1 15605127 884715 complement(461081..462340) 1 NC_000117.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 462340 lpxK 884715 lpxK Chlamydia trachomatis D/UW-3/CX tetraacyldisaccharide 4'-kinase NP_219912.1 461081 R 272561 CDS NP_219913.1 15605128 884713 complement(462356..463165) 1 NC_000117.1 rRNA methylase 463165 yjfH 884713 yjfH Chlamydia trachomatis D/UW-3/CX rRNA methylase NP_219913.1 462356 R 272561 CDS NP_219914.1 15605129 884711 complement(463153..463980) 1 NC_000117.1 N6-adenine-specific DNA methylase 463980 884711 CT404 Chlamydia trachomatis D/UW-3/CX N6-adenine-specific DNA methylase NP_219914.1 463153 R 272561 CDS NP_219915.1 15605130 884709 complement(463977..464576) 1 NC_000117.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 464576 ribC 884709 ribC Chlamydia trachomatis D/UW-3/CX riboflavin synthase subunit alpha NP_219915.1 463977 R 272561 CDS NP_219916.1 15605131 884710 464969..465433 1 NC_000117.1 NrdR family transcriptional regulator 465433 nrdR 884710 nrdR Chlamydia trachomatis D/UW-3/CX NrdR family transcriptional regulator NP_219916.1 464969 D 272561 CDS NP_219917.1 15605132 884708 465447..465821 1 NC_000117.1 dnaK suppressor protein 465821 dksA 884708 dksA Chlamydia trachomatis D/UW-3/CX dnaK suppressor protein NP_219917.1 465447 D 272561 CDS NP_219918.1 15605133 884706 465827..466330 1 NC_000117.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 466330 lspA 884706 lspA Chlamydia trachomatis D/UW-3/CX lipoprotein signal peptidase NP_219918.1 465827 D 272561 CDS NP_219919.1 15605134 884707 466432..467793 1 NC_000117.1 amino acid permease 467793 884707 CT409 Chlamydia trachomatis D/UW-3/CX amino acid permease NP_219919.1 466432 D 272561 CDS NP_219920.1 15605135 884701 468008..469285 1 NC_000117.1 polyA polymerase 469285 pcnB_1 884701 pcnB_1 Chlamydia trachomatis D/UW-3/CX polyA polymerase NP_219920.1 468008 D 272561 CDS NP_219921.1 15605136 884705 469346..471169 1 NC_000117.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 471169 lpxB 884705 lpxB Chlamydia trachomatis D/UW-3/CX lipid-A-disaccharide synthase NP_219921.1 469346 D 272561 CDS NP_219922.1 15605137 884704 471276..474203 1 NC_000117.1 polymorphic outer membrane protein 474203 pmpA 884704 pmpA Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_219922.1 471276 D 272561 CDS NP_219923.1 15605138 884703 474342..479597 1 NC_000117.1 outer membrane protein B 479597 pmpB 884703 pmpB Chlamydia trachomatis D/UW-3/CX outer membrane protein B NP_219923.1 474342 D 272561 CDS NP_219924.1 15605139 884702 479774..485086 1 NC_000117.1 outer membrane protein C 485086 pmpC 884702 pmpC Chlamydia trachomatis D/UW-3/CX outer membrane protein C NP_219924.1 479774 D 272561 CDS NP_219925.1 15605140 884699 485639..486469 1 NC_000117.1 solute-binding protein 486469 yebL 884699 yebL Chlamydia trachomatis D/UW-3/CX solute-binding protein NP_219925.1 485639 D 272561 CDS NP_219926.1 15605141 884700 486466..487176 1 NC_000117.1 ABC transporter ATPase 487176 884700 CT416 Chlamydia trachomatis D/UW-3/CX ABC transporter ATPase NP_219926.1 486466 D 272561 CDS NP_219927.1 15605142 884697 487167..488048 1 NC_000117.1 metal transport protein 488048 884697 CT417 Chlamydia trachomatis D/UW-3/CX metal transport protein NP_219927.1 487167 D 272561 CDS NP_219928.1 15605143 884698 complement(487964..488971) 1 NC_000117.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 488971 obgE 884698 obgE Chlamydia trachomatis D/UW-3/CX GTPase ObgE NP_219928.1 487964 R 272561 CDS NP_219929.1 15605144 884696 complement(489061..489312) 1 NC_000117.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 489312 rpmA 884696 rpmA Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L27 NP_219929.1 489061 R 272561 CDS NP_219930.1 15605145 884693 complement(489343..489666) 1 NC_000117.1 50S ribosomal protein L21 489666 rplU 884693 rplU Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L21 NP_219930.1 489343 R 272561 CDS NP_219931.1 15605146 884692 490216..490917 1 NC_000117.1 hypothetical protein 490917 884692 CT421 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219931.1 490216 D 272561 CDS NP_219932.1 15605147 884689 491102..491263 1 NC_000117.1 hypothetical protein 491263 884689 CT421.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219932.1 491102 D 272561 CDS NP_219933.1 15605148 884691 491280..491441 1 NC_000117.1 hypothetical protein 491441 884691 CT421.2 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219933.1 491280 D 272561 CDS NP_219934.1 15605149 884690 491454..491939 1 NC_000117.1 metalloenzyme 491939 884690 CT422 Chlamydia trachomatis D/UW-3/CX metalloenzyme NP_219934.1 491454 D 272561 CDS NP_219935.1 15605150 884688 492072..493181 1 NC_000117.1 CBS domain-containing protein 493181 884688 CT423 Chlamydia trachomatis D/UW-3/CX CBS domain-containing protein NP_219935.1 492072 D 272561 CDS NP_219936.1 15605151 884686 493370..493720 1 NC_000117.1 anti-sigma F factor antagonist 493720 rsbV_1 884686 rsbV_1 Chlamydia trachomatis D/UW-3/CX anti-sigma F factor antagonist NP_219936.1 493370 D 272561 CDS NP_219937.1 15605152 884685 493898..495763 1 NC_000117.1 hypothetical protein 495763 884685 CT425 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219937.1 493898 D 272561 CDS NP_219938.1 15605153 884687 495960..497069 1 NC_000117.1 hypothetical protein 497069 884687 CT426 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219938.1 495960 D 272561 CDS NP_219939.1 15605154 884684 497042..497863 1 NC_000117.1 hypothetical protein 497863 884684 CT427 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219939.1 497042 D 272561 CDS NP_219940.1 15605155 884682 497799..498488 1 NC_000117.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 498488 ubiE 884682 ubiE Chlamydia trachomatis D/UW-3/CX ubiquinone/menaquinone biosynthesis methyltransferase NP_219940.1 497799 D 272561 CDS NP_219941.1 15605156 884683 complement(498514..499503) 1 NC_000117.1 hypothetical protein 499503 884683 CT429 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219941.1 498514 R 272561 CDS NP_219942.1 15605157 884681 complement(499564..500391) 1 NC_000117.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 500391 dapF 884681 dapF Chlamydia trachomatis D/UW-3/CX diaminopimelate epimerase NP_219942.1 499564 R 272561 CDS NP_219943.1 15605158 884217 complement(500360..500938) 1 NC_000117.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 500938 clpP_1 884217 clpP_1 Chlamydia trachomatis D/UW-3/CX ATP-dependent Clp protease proteolytic subunit NP_219943.1 500360 R 272561 CDS NP_219944.1 15605159 884207 complement(500950..502443) 1 NC_000117.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 502443 glyA 884207 glyA Chlamydia trachomatis D/UW-3/CX serine hydroxymethyltransferase NP_219944.1 500950 R 272561 CDS NP_219945.1 15605160 884208 502807..503478 1 NC_000117.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 503478 hemD 884208 hemD Chlamydia trachomatis D/UW-3/CX uroporphyrinogen-III synthase NP_219945.1 502807 D 272561 CDS NP_219946.1 15605161 884209 503581..504117 1 NC_000117.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 504117 ispF 884209 ispF Chlamydia trachomatis D/UW-3/CX 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_219946.1 503581 D 272561 CDS NP_219947.1 15605162 884212 complement(504114..505166) 1 NC_000117.1 sulfite reductase 505166 cysJ 884212 cysJ Chlamydia trachomatis D/UW-3/CX sulfite reductase NP_219947.1 504114 R 272561 CDS NP_219948.1 15605163 884210 complement(505183..505500) 1 NC_000117.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 505500 rpsJ 884210 rpsJ Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S10 NP_219948.1 505183 R 272561 CDS NP_219949.1 15605164 884230 complement(505508..507592) 1 NC_000117.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 507592 fusA 884230 fusA Chlamydia trachomatis D/UW-3/CX elongation factor G NP_219949.1 505508 R 272561 CDS NP_219950.1 15605165 884211 complement(507634..508107) 1 NC_000117.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 508107 rs7 884211 rs7 Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S7 NP_219950.1 507634 R 272561 CDS NP_219951.1 15605611 884680 complement(508157..508528) 1 NC_000117.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 508528 rpsL 884680 rpsL Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S12 NP_219951.1 508157 R 272561 CDS NP_219952.1 15605166 884213 508788..509126 1 NC_000117.1 hypothetical protein 509126 884213 CT440 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219952.1 508788 D 272561 CDS NP_219953.1 15605167 884214 509284..511218 1 NC_000117.1 tail-specific protease 511218 tsp 884214 tsp Chlamydia trachomatis D/UW-3/CX tail-specific protease NP_219953.1 509284 D 272561 CDS NP_219954.1 15605168 884215 complement(511340..511792) 1 NC_000117.1 hypothetical protein 511792 crpA 884215 crpA Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219954.1 511340 R 272561 CDS NP_219955.1 15605169 884223 complement(511971..513632) 1 NC_000117.1 hypothetical protein 513632 omcB 884223 omcB Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219955.1 511971 R 272561 CDS NP_219956.1 15605170 884216 complement(513779..514045) 1 NC_000117.1 hypothetical protein 514045 omcA 884216 omcA Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219956.1 513779 R 272561 CDS NP_219957.1 15605171 884220 514382..514606 1 NC_000117.1 hypothetical protein 514606 884220 CT444.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219957.1 514382 D 272561 CDS NP_219958.1 15605172 884218 complement(514603..516123) 1 NC_000117.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 516123 gltX 884218 gltX Chlamydia trachomatis D/UW-3/CX glutamyl-tRNA synthetase NP_219958.1 514603 R 272561 CDS NP_219959.1 15605173 884219 complement(516395..516946) 1 NC_000117.1 hypothetical protein 516946 euo 884219 euo Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219959.1 516395 R 272561 CDS NP_219960.1 15605174 884221 complement(517351..519105) 1 NC_000117.1 ssDNA exonuclease 519105 recJ 884221 recJ Chlamydia trachomatis D/UW-3/CX ssDNA exonuclease NP_219960.1 517351 R 272561 CDS NP_219961.1 15605175 884222 complement(519223..523425) 1 NC_000117.1 fusion; part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; preprotein translocase subunits SecD/SecF 523425 secD/secF 884222 secD/secF Chlamydia trachomatis D/UW-3/CX preprotein translocase subunits SecD/SecF NP_219961.1 519223 R 272561 CDS NP_219962.1 15605176 884229 complement(523845..524177) 1 NC_000117.1 hypothetical protein 524177 884229 CT449 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219962.1 523845 R 272561 CDS NP_219963.1 15605177 884224 524640..525401 1 NC_000117.1 catalyzes the formation of UDP pyrophosphate from isopentenyl pyrophosphate; UDP pyrophosphate synthase 525401 yaeS 884224 yaeS Chlamydia trachomatis D/UW-3/CX UDP pyrophosphate synthase NP_219963.1 524640 D 272561 CDS NP_219964.1 15605178 884225 525407..526324 1 NC_000117.1 phosphatidate cytidylyltransferase 526324 cdsA 884225 cdsA Chlamydia trachomatis D/UW-3/CX phosphatidate cytidylyltransferase NP_219964.1 525407 D 272561 CDS NP_219965.1 15605179 884226 526321..526971 1 NC_000117.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 526971 cmk 884226 cmk Chlamydia trachomatis D/UW-3/CX cytidylate kinase NP_219965.1 526321 D 272561 CDS NP_219966.1 15605180 884227 526968..527618 1 NC_000117.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 527618 plsC 884227 plsC Chlamydia trachomatis D/UW-3/CX 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_219966.1 526968 D 272561 CDS NP_219967.1 15605181 884196 527633..529324 1 NC_000117.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 529324 argS 884196 argS Chlamydia trachomatis D/UW-3/CX arginyl-tRNA synthetase NP_219967.1 527633 D 272561 CDS NP_219968.1 15605182 884228 complement(529362..530696) 1 NC_000117.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 530696 murA 884228 murA Chlamydia trachomatis D/UW-3/CX UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_219968.1 529362 R 272561 CDS NP_219969.1 15605183 884231 530908..533925 1 NC_000117.1 hypothetical protein 533925 884231 CT456 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219969.1 530908 D 272561 CDS NP_219970.1 15605184 884236 complement(533977..534693) 1 NC_000117.1 hypothetical protein 534693 yebC 884236 yebC Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219970.1 533977 R 272561 CDS NP_219971.1 15605185 884232 complement(534878..535381) 1 NC_000117.1 ribosomal-protein-alanine acetyltransferase 535381 YhhY 884232 YhhY Chlamydia trachomatis D/UW-3/CX ribosomal-protein-alanine acetyltransferase NP_219971.1 534878 R 272561 CDS NP_219972.1 15605186 884235 complement(join(535378..536418,536417..536485)) 1 NC_000117.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 536485 prfB 884235 prfB Chlamydia trachomatis D/UW-3/CX peptide chain release factor 2 NP_219972.1 535378 R 272561 CDS NP_219973.1 15605187 884233 536805..537065 1 NC_000117.1 SWIB (YM74) complex protein 537065 884233 CT460 Chlamydia trachomatis D/UW-3/CX SWIB (YM74) complex protein NP_219973.1 536805 D 272561 CDS NP_219974.1 15605188 884234 537123..538112 1 NC_000117.1 phosphohydrolase 538112 yaeI 884234 yaeI Chlamydia trachomatis D/UW-3/CX phosphohydrolase NP_219974.1 537123 D 272561 CDS NP_219975.1 15605189 884238 538102..538761 1 NC_000117.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 538761 ispD 884238 ispD Chlamydia trachomatis D/UW-3/CX 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_219975.1 538102 D 272561 CDS NP_219976.1 15605190 884239 538770..539573 1 NC_000117.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 539573 truA 884239 truA Chlamydia trachomatis D/UW-3/CX tRNA pseudouridine synthase A NP_219976.1 538770 D 272561 CDS NP_219977.1 15605191 884248 complement(539525..540199) 1 NC_000117.1 hydrolase, haloacid dehalogenase-like family 540199 884248 CT464 Chlamydia trachomatis D/UW-3/CX hydrolase, haloacid dehalogenase-like family NP_219977.1 539525 R 272561 CDS NP_219978.1 15605192 884237 540292..540933 1 NC_000117.1 hypothetical protein 540933 884237 CT465 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219978.1 540292 D 272561 CDS NP_219979.1 15605193 884241 541227..541556 1 NC_000117.1 hypothetical protein 541556 884241 CT466 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219979.1 541227 D 272561 CDS NP_219980.1 15605194 884242 541534..542592 1 NC_000117.1 2-component regulatory system-sensor histidine kinase 542592 atoS 884242 atoS Chlamydia trachomatis D/UW-3/CX 2-component regulatory system-sensor histidine kinase NP_219980.1 541534 D 272561 CDS NP_219981.1 15605195 884243 542635..543795 1 NC_000117.1 2-component regulatory system-ATPase 543795 atoC 884243 atoC Chlamydia trachomatis D/UW-3/CX 2-component regulatory system-ATPase NP_219981.1 542635 D 272561 CDS NP_219982.1 15605196 884244 544022..544558 1 NC_000117.1 hypothetical protein 544558 884244 CT469 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219982.1 544022 D 272561 CDS NP_219983.1 15605197 884245 544528..545259 1 NC_000117.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 545259 recO 884245 recO Chlamydia trachomatis D/UW-3/CX DNA repair protein RecO NP_219983.1 544528 D 272561 CDS NP_219984.1 15605198 884246 complement(545256..545858) 1 NC_000117.1 hypothetical protein 545858 884246 CT471 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219984.1 545256 R 272561 CDS NP_219985.1 15605199 884249 546322..547116 1 NC_000117.1 hypothetical protein 547116 884249 CT472 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219985.1 546322 D 272561 CDS NP_219986.1 15605200 884203 547122..547436 1 NC_000117.1 hypothetical protein 547436 884203 CT473 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219986.1 547122 D 272561 CDS NP_219987.1 15605201 884250 complement(547375..548304) 1 NC_000117.1 hypothetical protein 548304 884250 CT474 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219987.1 547375 R 272561 CDS NP_219988.1 15605202 884251 548392..550764 1 NC_000117.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 550764 pheT 884251 pheT Chlamydia trachomatis D/UW-3/CX phenylalanyl-tRNA synthetase subunit beta NP_219988.1 548392 D 272561 CDS NP_219989.1 15605203 884252 550761..551726 1 NC_000117.1 hypothetical protein 551726 884252 CT476 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219989.1 550761 D 272561 CDS NP_219990.1 15605204 884253 551745..552257 1 NC_000117.1 methylated-DNA protein - cysteine methyltransferase 552257 ada 884253 ada Chlamydia trachomatis D/UW-3/CX methylated-DNA protein - cysteine methyltransferase NP_219990.1 551745 D 272561 CDS NP_219991.1 15605205 884254 complement(552254..553990) 1 NC_000117.1 oligopeptide permease 553990 oppC_2 884254 oppC_2 Chlamydia trachomatis D/UW-3/CX oligopeptide permease NP_219991.1 552254 R 272561 CDS NP_219992.1 15605206 884255 complement(553992..555470) 1 NC_000117.1 oligopeptide permease 555470 oppB_2 884255 oppB_2 Chlamydia trachomatis D/UW-3/CX oligopeptide permease NP_219992.1 553992 R 272561 CDS NP_219993.1 15605207 884260 complement(555452..557542) 1 NC_000117.1 oligopeptide binding lipoprotein 557542 oppA_4 884260 oppA_4 Chlamydia trachomatis D/UW-3/CX oligopeptide binding lipoprotein NP_219993.1 555452 R 272561 CDS NP_219994.1 15605208 884256 complement(557793..557957) 1 NC_000117.1 hypothetical protein 557957 884256 CT480.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219994.1 557793 R 272561 CDS NP_219995.1 15605209 884265 complement(558150..558881) 1 NC_000117.1 hypothetical protein 558881 884265 CT481 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219995.1 558150 R 272561 CDS NP_219996.1 15605210 884257 complement(559043..559696) 1 NC_000117.1 hypothetical protein 559696 884257 CT482 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219996.1 559043 R 272561 CDS NP_219997.1 15605211 884204 560164..560529 1 NC_000117.1 hypothetical protein 560529 884204 CT483 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219997.1 560164 D 272561 CDS NP_219998.1 15605212 884258 complement(560508..561506) 1 NC_000117.1 hypothetical protein 561506 884258 CT484 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_219998.1 560508 R 272561 CDS NP_219999.1 15605213 884259 complement(561663..562607) 1 NC_000117.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 562607 hemH 884259 hemH Chlamydia trachomatis D/UW-3/CX ferrochelatase NP_219999.1 561663 R 272561 CDS NP_220000.1 15605214 884262 complement(562629..563414) 1 NC_000117.1 glutamine-binding protein 563414 fliY 884262 fliY Chlamydia trachomatis D/UW-3/CX glutamine-binding protein NP_220000.1 562629 R 272561 CDS NP_220001.1 15605215 884206 complement(563460..564032) 1 NC_000117.1 methyltransferase 564032 yhhF 884206 yhhF Chlamydia trachomatis D/UW-3/CX methyltransferase NP_220001.1 563460 R 272561 CDS NP_220002.1 15605216 884261 complement(564029..564763) 1 NC_000117.1 hypothetical protein 564763 884261 CT488 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220002.1 564029 R 272561 CDS NP_220003.1 15605217 884264 complement(564852..566177) 1 NC_000117.1 glucose-1-phosphate adenylyltransferase 566177 glgC 884264 glgC Chlamydia trachomatis D/UW-3/CX glucose-1-phosphate adenylyltransferase NP_220003.1 564852 R 272561 CDS NP_220004.1 15605218 884263 566370..566621 1 NC_000117.1 hypothetical protein 566621 884263 CT490 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220004.1 566370 D 272561 CDS NP_220005.1 15605219 884272 complement(566631..568025) 1 NC_000117.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 568025 rho 884272 rho Chlamydia trachomatis D/UW-3/CX transcription termination factor Rho NP_220005.1 566631 R 272561 CDS NP_220006.1 15605220 884266 complement(568022..568630) 1 NC_000117.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 568630 coaE 884266 coaE Chlamydia trachomatis D/UW-3/CX dephospho-CoA kinase NP_220006.1 568022 R 272561 CDS NP_220007.1 15605221 884267 complement(568624..571224) 1 NC_000117.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 571224 polA 884267 polA Chlamydia trachomatis D/UW-3/CX DNA polymerase I NP_220007.1 568624 R 272561 CDS NP_220008.1 15605222 884268 complement(571241..572236) 1 NC_000117.1 protease 572236 sohB 884268 sohB Chlamydia trachomatis D/UW-3/CX protease NP_220008.1 571241 R 272561 CDS NP_220009.1 15605223 884269 complement(572375..573997) 1 NC_000117.1 ADP/ATP translocase 573997 884269 CT495 Chlamydia trachomatis D/UW-3/CX ADP/ATP translocase NP_220009.1 572375 R 272561 CDS NP_220010.1 15605224 884270 complement(574209..574715) 1 NC_000117.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 574715 pgsA_1 884270 pgsA_1 Chlamydia trachomatis D/UW-3/CX CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_220010.1 574209 R 272561 CDS NP_220011.1 15605225 884274 complement(575111..575260) 1 NC_000117.1 hypothetical protein 575260 884274 CT496.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220011.1 575111 R 272561 CDS NP_220012.1 15605226 884289 575229..576647 1 NC_000117.1 unwinds double stranded DNA; replicative DNA helicase 576647 dnaB 884289 dnaB Chlamydia trachomatis D/UW-3/CX replicative DNA helicase NP_220012.1 575229 D 272561 CDS NP_220013.1 15605227 884271 576941..578773 1 NC_000117.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 578773 gidA 884271 gidA Chlamydia trachomatis D/UW-3/CX tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA NP_220013.1 576941 D 272561 CDS NP_220014.1 15605228 884273 578763..579464 1 NC_000117.1 lipoate-protein ligase A 579464 lplA_2 884273 lplA_2 Chlamydia trachomatis D/UW-3/CX lipoate-protein ligase A NP_220014.1 578763 D 272561 CDS NP_220015.1 15605229 884275 complement(579521..579946) 1 NC_000117.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 579946 ndk 884275 ndk Chlamydia trachomatis D/UW-3/CX nucleoside diphosphate kinase NP_220015.1 579521 R 272561 CDS NP_220016.1 15605230 884276 complement(580106..580708) 1 NC_000117.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 580708 ruvA 884276 ruvA Chlamydia trachomatis D/UW-3/CX Holliday junction DNA helicase RuvA NP_220016.1 580106 R 272561 CDS NP_220017.1 15605231 884279 complement(580728..581240) 1 NC_000117.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 581240 ruvC 884279 ruvC Chlamydia trachomatis D/UW-3/CX Holliday junction resolvase NP_220017.1 580728 R 272561 CDS NP_220018.1 15605232 884278 complement(581348..581902) 1 NC_000117.1 hypothetical protein 581902 884278 CT503 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220018.1 581348 R 272561 CDS NP_220019.1 15605233 884290 complement(582189..583055) 1 NC_000117.1 hypothetical protein 583055 884290 CT504 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220019.1 582189 R 272561 CDS NP_220020.1 15605234 884280 complement(583066..584070) 1 NC_000117.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 584070 gapA 884280 gapA Chlamydia trachomatis D/UW-3/CX glyceraldehyde-3-phosphate dehydrogenase NP_220020.1 583066 R 272561 CDS NP_220021.1 15605235 884282 complement(584114..584539) 1 NC_000117.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 584539 rplQ 884282 rplQ Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L17 NP_220021.1 584114 R 272561 CDS NP_220022.1 15605236 884283 complement(584548..585681) 1 NC_000117.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the subunit alpha is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 585681 rpoA 884283 rpoA Chlamydia trachomatis D/UW-3/CX DNA-directed RNA polymerase subunit alpha NP_220022.1 584548 R 272561 CDS NP_220023.1 15605237 884284 complement(585702..586100) 1 NC_000117.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 586100 rs11 884284 rs11 Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S11 NP_220023.1 585702 R 272561 CDS NP_220024.1 15605238 884285 complement(586122..586490) 1 NC_000117.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 586490 rpsM 884285 rpsM Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S13 NP_220024.1 586122 R 272561 CDS NP_220025.1 15605239 884286 complement(586546..587919) 1 NC_000117.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 587919 secY 884286 secY Chlamydia trachomatis D/UW-3/CX preprotein translocase subunit SecY NP_220025.1 586546 R 272561 CDS NP_220026.1 15605240 884287 complement(587942..588376) 1 NC_000117.1 late assembly protein; 50S ribosomal protein L15 588376 rplO 884287 rplO Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L15 NP_220026.1 587942 R 272561 CDS NP_220027.1 15605241 884297 complement(588369..588866) 1 NC_000117.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 588866 rpsE 884297 rpsE Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S5 NP_220027.1 588369 R 272561 CDS NP_220028.1 15605242 884288 complement(588881..589252) 1 NC_000117.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 589252 rplR 884288 rplR Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L18 NP_220028.1 588881 R 272561 CDS NP_220029.1 15605243 884293 complement(589274..589825) 1 NC_000117.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 589825 rplF 884293 rplF Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L6 NP_220029.1 589274 R 272561 CDS NP_220030.1 15605244 884291 complement(589853..590254) 1 NC_000117.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 590254 rpsH 884291 rpsH Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S8 NP_220030.1 589853 R 272561 CDS NP_220031.1 15605245 884292 complement(590272..590814) 1 NC_000117.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 590814 rplE 884292 rplE Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L5 NP_220031.1 590272 R 272561 CDS NP_220032.1 15605246 884294 complement(590816..591151) 1 NC_000117.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 591151 rplX 884294 rplX Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L24 NP_220032.1 590816 R 272561 CDS NP_220033.1 15605247 884295 complement(591164..591532) 1 NC_000117.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 591532 rplN 884295 rplN Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L14 NP_220033.1 591164 R 272561 CDS NP_220034.1 15605248 884306 complement(591549..591800) 1 NC_000117.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 591800 rpsQ 884306 rpsQ Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S17 NP_220034.1 591549 R 272561 CDS NP_220035.1 15605249 884296 complement(591793..592011) 1 NC_000117.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 592011 rpmC 884296 rpmC Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L29 NP_220035.1 591793 R 272561 CDS NP_220036.1 15605250 884298 complement(592013..592429) 1 NC_000117.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 592429 rplP 884298 rplP Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L16 NP_220036.1 592013 R 272561 CDS NP_220037.1 15605251 884299 complement(592462..593136) 1 NC_000117.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 593136 rpsC 884299 rpsC Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S3 NP_220037.1 592462 R 272561 CDS NP_220038.1 15605252 884300 complement(593146..593481) 1 NC_000117.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 593481 rplV 884300 rplV Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L22 NP_220038.1 593146 R 272561 CDS NP_220039.1 15605253 884301 complement(593500..593766) 1 NC_000117.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 593766 rpsS 884301 rpsS Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S19 NP_220039.1 593500 R 272561 CDS NP_220040.1 15605254 884305 complement(593772..594626) 1 NC_000117.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 594626 rplB 884305 rplB Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L2 NP_220040.1 593772 R 272561 CDS NP_220041.1 15605255 884302 complement(594650..594985) 1 NC_000117.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 594985 rplW 884302 rplW Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L23 NP_220041.1 594650 R 272561 CDS NP_220042.1 15605256 884315 complement(595001..595669) 1 NC_000117.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 595669 rplD 884315 rplD Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L4 NP_220042.1 595001 R 272561 CDS NP_220043.1 15605257 884303 complement(595678..596343) 1 NC_000117.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 596343 rplC 884303 rplC Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L3 NP_220043.1 595678 R 272561 CDS NP_220044.1 15605258 884304 complement(596778..597674) 1 NC_000117.1 hypothetical protein 597674 884304 CT529 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220044.1 596778 R 272561 CDS NP_220045.1 15605259 884314 complement(597840..598790) 1 NC_000117.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 598790 fmt 884314 fmt Chlamydia trachomatis D/UW-3/CX methionyl-tRNA formyltransferase NP_220045.1 597840 R 272561 CDS NP_220046.1 15605260 884307 complement(598780..599622) 1 NC_000117.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 599622 lpxA 884307 lpxA Chlamydia trachomatis D/UW-3/CX UDP-N-acetylglucosamine acyltransferase NP_220046.1 598780 R 272561 CDS NP_220047.1 15605261 884308 complement(599634..600095) 1 NC_000117.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 600095 fabZ 884308 fabZ Chlamydia trachomatis D/UW-3/CX (3R)-hydroxymyristoyl-ACP dehydratase NP_220047.1 599634 R 272561 CDS NP_220048.1 15605262 884309 complement(600092..600952) 1 NC_000117.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 600952 lpxC 884309 lpxC Chlamydia trachomatis D/UW-3/CX UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase NP_220048.1 600092 R 272561 CDS NP_220049.1 15605263 884310 complement(601053..602681) 1 NC_000117.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 602681 lnt 884310 lnt Chlamydia trachomatis D/UW-3/CX apolipoprotein N-acyltransferase NP_220049.1 601053 R 272561 CDS NP_220050.1 15605264 884311 complement(602745..603227) 1 NC_000117.1 acyl-CoA hydrolase 603227 yciA 884311 yciA Chlamydia trachomatis D/UW-3/CX acyl-CoA hydrolase NP_220050.1 602745 R 272561 CDS NP_220051.1 15605265 884312 complement(603363..604115) 1 NC_000117.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 604115 dnaQ_2 884312 dnaQ_2 Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunit epsilon NP_220051.1 603363 R 272561 CDS NP_220052.1 15605266 884313 complement(604119..604592) 1 NC_000117.1 ATPase or kinase 604592 yjeE 884313 yjeE Chlamydia trachomatis D/UW-3/CX ATPase or kinase NP_220052.1 604119 R 272561 CDS NP_220053.1 15605267 884316 complement(604571..605287) 1 NC_000117.1 hypothetical protein 605287 884316 CT538 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220053.1 604571 R 272561 CDS NP_220054.1 15605268 884317 606009..606317 1 NC_000117.1 thioredoxin 606317 trxA 884317 trxA Chlamydia trachomatis D/UW-3/CX thioredoxin NP_220054.1 606009 D 272561 CDS NP_220055.1 15605269 884326 complement(606367..606822) 1 NC_000117.1 rRNA methylase 606822 yibK 884326 yibK Chlamydia trachomatis D/UW-3/CX rRNA methylase NP_220055.1 606367 R 272561 CDS NP_220056.1 15605270 884327 complement(606838..607569) 1 NC_000117.1 peptidyl-prolyl cis-trans isomerase 607569 mip 884327 mip Chlamydia trachomatis D/UW-3/CX peptidyl-prolyl cis-trans isomerase NP_220056.1 606838 R 272561 CDS NP_220057.1 15605271 884319 complement(607707..609455) 1 NC_000117.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 609455 aspS 884319 aspS Chlamydia trachomatis D/UW-3/CX aspartyl-tRNA synthetase NP_220057.1 607707 R 272561 CDS NP_220058.1 15605272 884320 complement(609436..610722) 1 NC_000117.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 610722 hisS 884320 hisS Chlamydia trachomatis D/UW-3/CX histidyl-tRNA synthetase NP_220058.1 609436 R 272561 CDS NP_220059.1 15605273 884321 611158..612528 1 NC_000117.1 hexosphosphate transport 612528 uhpC 884321 uhpC Chlamydia trachomatis D/UW-3/CX hexosphosphate transport NP_220059.1 611158 D 272561 CDS NP_220060.1 15605274 884322 612542..616255 1 NC_000117.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 616255 dnaE 884322 dnaE Chlamydia trachomatis D/UW-3/CX DNA polymerase III subunit alpha NP_220060.1 612542 D 272561 CDS NP_220061.1 15605275 884323 complement(616484..617353) 1 NC_000117.1 hypothetical protein 617353 884323 CT546 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220061.1 616484 R 272561 CDS NP_220062.1 15605276 884324 617505..618461 1 NC_000117.1 hypothetical protein 618461 884324 CT547 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220062.1 617505 D 272561 CDS NP_220063.1 15605277 884335 618486..619070 1 NC_000117.1 hypothetical protein 619070 884335 CT548 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220063.1 618486 D 272561 CDS NP_220064.1 15605278 884329 619057..619497 1 NC_000117.1 sigma regulatory factor-histidine kinase 619497 rsbW 884329 rsbW Chlamydia trachomatis D/UW-3/CX sigma regulatory factor-histidine kinase NP_220064.1 619057 D 272561 CDS NP_220065.1 15605279 884325 complement(619504..619929) 1 NC_000117.1 hypothetical protein 619929 884325 CT550 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220065.1 619504 R 272561 CDS NP_220066.1 15605280 884339 620037..621068 1 NC_000117.1 D-alanyl-D-alanine carboxypeptidase 621068 dacC 884339 dacC Chlamydia trachomatis D/UW-3/CX D-alanyl-D-alanine carboxypeptidase NP_220066.1 620037 D 272561 CDS NP_220067.1 15605281 884328 621483..621890 1 NC_000117.1 hypothetical protein 621890 884328 CT552 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220067.1 621483 D 272561 CDS NP_220068.1 15605282 884330 622015..622992 1 NC_000117.1 RNA methyltransferase 622992 fmu 884330 fmu Chlamydia trachomatis D/UW-3/CX RNA methyltransferase NP_220068.1 622015 D 272561 CDS NP_220069.1 15605283 884331 623142..624377 1 NC_000117.1 branched chain amino acid ABC transporter substrate-binding protein 624377 brnQ 884331 brnQ Chlamydia trachomatis D/UW-3/CX branched chain amino acid ABC transporter substrate-binding protein NP_220069.1 623142 D 272561 CDS NP_220070.1 15605284 884332 624552..628151 1 NC_000117.1 SWI/SNF family helicase 628151 884332 CT555 Chlamydia trachomatis D/UW-3/CX SWI/SNF family helicase NP_220070.1 624552 D 272561 CDS NP_220071.1 15605285 884333 628329..628808 1 NC_000117.1 hypothetical protein 628808 884333 CT556 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220071.1 628329 D 272561 CDS NP_220072.1 15605286 884341 629017..630414 1 NC_000117.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 630414 lpdA 884341 lpdA Chlamydia trachomatis D/UW-3/CX dihydrolipoamide dehydrogenase NP_220072.1 629017 D 272561 CDS NP_220073.1 15605287 884334 630411..631346 1 NC_000117.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 631346 lipA 884334 lipA Chlamydia trachomatis D/UW-3/CX lipoyl synthase NP_220073.1 630411 D 272561 CDS NP_220074.1 15605288 884336 631450..632430 1 NC_000117.1 Yop proteins translocation lipoprotein J 632430 yscJ 884336 yscJ Chlamydia trachomatis D/UW-3/CX Yop proteins translocation lipoprotein J NP_220074.1 631450 D 272561 CDS NP_220075.1 15605289 884337 632431..633267 1 NC_000117.1 hypothetical protein 633267 884337 CT560 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220075.1 632431 D 272561 CDS NP_220076.1 15605290 884342 633543..634214 1 NC_000117.1 type III secretion system protein 634214 yscL 884342 yscL Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_220076.1 633543 D 272561 CDS NP_220077.1 15605291 884338 634227..635147 1 NC_000117.1 type III secretion system protein 635147 yscR 884338 yscR Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_220077.1 634227 D 272561 CDS NP_220078.1 15605292 884350 635159..635443 1 NC_000117.1 Yop proteins translocation protein S 635443 yscS 884350 yscS Chlamydia trachomatis D/UW-3/CX Yop proteins translocation protein S NP_220078.1 635159 D 272561 CDS NP_220079.1 15605293 884347 635450..636319 1 NC_000117.1 Yop proteins translocation protein T 636319 yyscT 884347 yyscT Chlamydia trachomatis D/UW-3/CX Yop proteins translocation protein T NP_220079.1 635450 D 272561 CDS NP_220080.1 15605294 884340 complement(636397..636840) 1 NC_000117.1 hypothetical protein 636840 884340 CT565 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220080.1 636397 R 272561 CDS NP_220081.1 15605295 884343 complement(636931..637923) 1 NC_000117.1 hypothetical protein 637923 884343 CT566 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220081.1 636931 R 272561 CDS NP_220082.1 15605296 884344 complement(637929..638453) 1 NC_000117.1 hypothetical protein 638453 884344 CT567 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220082.1 637929 R 272561 CDS NP_220083.1 15605297 884345 complement(638438..638893) 1 NC_000117.1 hypothetical protein 638893 884345 CT568 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220083.1 638438 R 272561 CDS NP_220084.1 15605298 884357 complement(638877..639206) 1 NC_000117.1 general secretion pathway protein G 639206 884357 CT569 Chlamydia trachomatis D/UW-3/CX general secretion pathway protein G NP_220084.1 638877 R 272561 CDS NP_220085.1 15605299 884346 complement(639268..640443) 1 NC_000117.1 general secretion pathway protein F 640443 gspF 884346 gspF Chlamydia trachomatis D/UW-3/CX general secretion pathway protein F NP_220085.1 639268 R 272561 CDS NP_220086.1 15605300 884348 complement(640455..641960) 1 NC_000117.1 general secretion pathway protein E 641960 gspE 884348 gspE Chlamydia trachomatis D/UW-3/CX general secretion pathway protein E NP_220086.1 640455 R 272561 CDS NP_220087.1 15605301 884363 complement(641944..644226) 1 NC_000117.1 general secretion pathway protein D 644226 gspD 884363 gspD Chlamydia trachomatis D/UW-3/CX general secretion pathway protein D NP_220087.1 641944 R 272561 CDS NP_220088.1 15605302 884349 complement(644227..645456) 1 NC_000117.1 hypothetical protein 645456 884349 CT573 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220088.1 644227 R 272561 CDS NP_220089.1 15605303 884351 complement(645584..646654) 1 NC_000117.1 aminopeptidase P 646654 pepP 884351 pepP Chlamydia trachomatis D/UW-3/CX aminopeptidase P NP_220089.1 645584 R 272561 CDS NP_220090.1 15605304 884352 complement(646665..648395) 1 NC_000117.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 648395 mutL 884352 mutL Chlamydia trachomatis D/UW-3/CX DNA mismatch repair protein NP_220090.1 646665 R 272561 CDS NP_220091.1 15605305 884353 648690..649388 1 NC_000117.1 low calcium response protein H 649388 lcrH_1 884353 lcrH_1 Chlamydia trachomatis D/UW-3/CX low calcium response protein H NP_220091.1 648690 D 272561 CDS NP_220092.1 15605306 884354 649405..649764 1 NC_000117.1 hypothetical protein 649764 884354 CT577 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220092.1 649405 D 272561 CDS NP_220093.1 15605307 884355 649801..651264 1 NC_000117.1 hypothetical protein 651264 884355 CT578 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220093.1 649801 D 272561 CDS NP_220094.1 15605308 884356 651295..652614 1 NC_000117.1 hypothetical protein 652614 884356 CT579 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220094.1 651295 D 272561 CDS NP_220095.1 15605309 884358 complement(652692..653675) 1 NC_000117.1 hypothetical protein 653675 884358 CT580 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220095.1 652692 R 272561 CDS NP_220096.1 15605310 884359 653980..655887 1 NC_000117.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 655887 thrS 884359 thrS Chlamydia trachomatis D/UW-3/CX threonyl-tRNA synthetase NP_220096.1 653980 D 272561 CDS NP_220097.1 15605311 884360 656338..657105 1 NC_000117.1 chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D 657105 minD 884360 minD Chlamydia trachomatis D/UW-3/CX chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D NP_220097.1 656338 D 272561 CDS NP_220098.1 15605312 884361 657110..657901 1 NC_000117.1 virulence protein pGP6-D 657901 gp6D 884361 gp6D Chlamydia trachomatis D/UW-3/CX virulence protein pGP6-D NP_220098.1 657110 D 272561 CDS NP_220099.1 15605313 884367 657867..658418 1 NC_000117.1 hypothetical protein 658418 884367 CT584 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220099.1 657867 D 272561 CDS NP_220100.1 15605314 884362 658617..659657 1 NC_000117.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 659657 trpS 884362 trpS Chlamydia trachomatis D/UW-3/CX tryptophanyl-tRNA synthetase NP_220100.1 658617 D 272561 CDS NP_220101.1 15605315 884370 659682..661688 1 NC_000117.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 661688 uvrB 884370 uvrB Chlamydia trachomatis D/UW-3/CX excinuclease ABC subunit B NP_220101.1 659682 D 272561 CDS NP_220102.1 15605316 884364 661850..663124 1 NC_000117.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 663124 eno 884364 eno Chlamydia trachomatis D/UW-3/CX phosphopyruvate hydratase NP_220102.1 661850 D 272561 CDS NP_220103.1 15605317 884365 663251..665203 1 NC_000117.1 sigma regulatory family protein-PP2C phosphatase 665203 rbsU 884365 rbsU Chlamydia trachomatis D/UW-3/CX sigma regulatory family protein-PP2C phosphatase NP_220103.1 663251 D 272561 CDS NP_220104.1 15605318 884366 665328..667136 1 NC_000117.1 hypothetical protein 667136 884366 CT589 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220104.1 665328 D 272561 CDS NP_220105.1 15605319 884376 complement(667151..670015) 1 NC_000117.1 hypothetical protein 670015 884376 CT590 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220105.1 667151 R 272561 CDS NP_220106.1 15605320 884368 complement(670112..670810) 1 NC_000117.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 670810 sdhB 884368 sdhB Chlamydia trachomatis D/UW-3/CX succinate dehydrogenase iron-sulfur subunit NP_220106.1 670112 R 272561 CDS NP_220107.1 15605321 884375 complement(671047..672768) 1 NC_000117.1 Converts succinate to fumarate as part of the TCA cycle. It is the only membrane bound enzyme in the TCA cycle; succinate dehydrogenase flavoprotein subunit 672768 sdhA 884375 sdhA Chlamydia trachomatis D/UW-3/CX succinate dehydrogenase flavoprotein subunit NP_220107.1 671047 R 272561 CDS NP_220108.1 15605322 884369 complement(672765..673334) 1 NC_000117.1 succinate dehydrogenase 673334 sdhC 884369 sdhC Chlamydia trachomatis D/UW-3/CX succinate dehydrogenase NP_220108.1 672765 R 272561 CDS NP_220109.1 15605323 884371 complement(673360..673551) 1 NC_000117.1 hypothetical protein 673551 884371 CT593.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220109.1 673360 R 272561 CDS NP_220110.1 15605324 884372 complement(673773..674564) 1 NC_000117.1 PHP superfamily hydrolase 674564 ycfH 884372 ycfH Chlamydia trachomatis D/UW-3/CX PHP superfamily hydrolase NP_220110.1 673773 R 272561 CDS NP_220111.1 15605325 884373 complement(674649..676727) 1 NC_000117.1 Thio:disulfide interchange protein 676727 dsbD 884373 dsbD Chlamydia trachomatis D/UW-3/CX Thio:disulfide interchange protein NP_220111.1 674649 R 272561 CDS NP_220112.1 15605326 884385 676880..677578 1 NC_000117.1 polysaccharide transporter 677578 exbB 884385 exbB Chlamydia trachomatis D/UW-3/CX polysaccharide transporter NP_220112.1 676880 D 272561 CDS NP_220113.1 15605327 884374 677575..677982 1 NC_000117.1 biopolymer transport protein 677982 exbD 884374 exbD Chlamydia trachomatis D/UW-3/CX biopolymer transport protein NP_220113.1 677575 D 272561 CDS NP_220114.1 15605328 884381 677985..678692 1 NC_000117.1 histone H1-I 678692 884381 CT598 Chlamydia trachomatis D/UW-3/CX histone H1-I NP_220114.1 677985 D 272561 CDS NP_220115.1 15605329 884377 678692..679987 1 NC_000117.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 679987 tolB 884377 tolB Chlamydia trachomatis D/UW-3/CX translocation protein TolB NP_220115.1 678692 D 272561 CDS NP_220116.1 15605330 884378 679984..680550 1 NC_000117.1 peptidoglycan-associated lipoprotein 680550 pal 884378 pal Chlamydia trachomatis D/UW-3/CX peptidoglycan-associated lipoprotein NP_220116.1 679984 D 272561 CDS NP_220117.1 15605331 884379 680540..681142 1 NC_000117.1 invasin repeat-containing phosphatase 681142 papQ 884379 papQ Chlamydia trachomatis D/UW-3/CX invasin repeat-containing phosphatase NP_220117.1 680540 D 272561 CDS NP_220118.1 15605332 884383 681213..681605 1 NC_000117.1 hypothetical protein 681605 884383 CT602 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220118.1 681213 D 272561 CDS NP_220119.1 15605333 884380 complement(681602..682189) 1 NC_000117.1 thioredoxin peroxidase 682189 ahpC 884380 ahpC Chlamydia trachomatis D/UW-3/CX thioredoxin peroxidase NP_220119.1 681602 R 272561 CDS NP_220120.1 15605334 884384 complement(682398..683999) 1 NC_000117.1 molecular chaperone GroEL 683999 groEL_2 884384 groEL_2 Chlamydia trachomatis D/UW-3/CX molecular chaperone GroEL NP_220120.1 682398 R 272561 CDS NP_220121.1 15605335 884391 complement(684076..685305) 1 NC_000117.1 hypothetical protein 685305 ybbC 884391 ybbC Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220121.1 684076 R 272561 CDS NP_220122.1 15605336 884386 685503..686132 1 NC_000117.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 686132 yggV 884386 yggV Chlamydia trachomatis D/UW-3/CX deoxyribonucleotide triphosphate pyrophosphatase NP_220122.1 685503 D 272561 CDS NP_220123.1 15605337 884387 complement(686106..686345) 1 NC_000117.1 hypothetical protein 686345 884387 CT606.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220123.1 686106 R 272561 CDS NP_220124.1 15605338 884388 complement(686330..687019) 1 NC_000117.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 687019 ung 884388 ung Chlamydia trachomatis D/UW-3/CX uracil-DNA glycosylase NP_220124.1 686330 R 272561 CDS NP_220125.1 15605339 884389 687100..689004 1 NC_000117.1 DNA helicase 689004 uvrD 884389 uvrD Chlamydia trachomatis D/UW-3/CX DNA helicase NP_220125.1 687100 D 272561 CDS NP_220126.1 15605340 884398 689008..690318 1 NC_000117.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 690318 rpoN 884398 rpoN Chlamydia trachomatis D/UW-3/CX RNA polymerase factor sigma-54 NP_220126.1 689008 D 272561 CDS NP_220127.1 15605341 884390 complement(690426..691121) 1 NC_000117.1 hypothetical protein 691121 884390 CT610 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220127.1 690426 R 272561 CDS NP_220128.1 15605342 884392 complement(691118..691849) 1 NC_000117.1 hypothetical protein 691849 884392 CT611 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220128.1 691118 R 272561 CDS NP_220129.1 15605343 884394 complement(691821..692300) 1 NC_000117.1 dihydrofolate reductase 692300 folA 884394 folA Chlamydia trachomatis D/UW-3/CX dihydrofolate reductase NP_220129.1 691821 R 272561 CDS NP_220130.1 15605344 884393 complement(692297..693649) 1 NC_000117.1 dihydropteroate synthase 693649 folP 884393 folP Chlamydia trachomatis D/UW-3/CX dihydropteroate synthase NP_220130.1 692297 R 272561 CDS NP_220131.1 15605345 884397 complement(693646..694020) 1 NC_000117.1 dihydroneopterin aldolase 694020 folX 884397 folX Chlamydia trachomatis D/UW-3/CX dihydroneopterin aldolase NP_220131.1 693646 R 272561 CDS NP_220132.1 15605346 884395 complement(694039..695754) 1 NC_000117.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 695754 rpoD 884395 rpoD Chlamydia trachomatis D/UW-3/CX RNA polymerase sigma factor NP_220132.1 694039 R 272561 CDS NP_220133.1 15605347 884396 complement(695903..697192) 1 NC_000117.1 hypothetical protein 697192 884396 CT616 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220133.1 695903 R 272561 CDS NP_220134.1 15605348 884412 697641..697937 1 NC_000117.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 697937 rpsT 884412 rpsT Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S20 NP_220134.1 697641 D 272561 CDS NP_220135.1 15605349 884410 698170..698970 1 NC_000117.1 hypothetical protein 698970 884410 CT618 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220135.1 698170 D 272561 CDS NP_220136.1 15605350 884399 complement(699026..701659) 1 NC_000117.1 hypothetical protein 701659 884399 CT619 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220136.1 699026 R 272561 CDS NP_220137.1 15605351 884400 701774..704290 1 NC_000117.1 hypothetical protein 704290 884400 CT620 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220137.1 701774 D 272561 CDS NP_220138.1 15605352 884401 complement(704354..706852) 1 NC_000117.1 hypothetical protein 706852 884401 CT621 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220138.1 704354 R 272561 CDS NP_220139.1 15605353 884402 complement(707080..709023) 1 NC_000117.1 hypothetical protein 709023 884402 CT622 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220139.1 707080 R 272561 CDS NP_220140.1 15605354 884405 complement(709131..710429) 1 NC_000117.1 hypothetical protein 710429 884405 CT623 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220140.1 709131 R 272561 CDS NP_220141.1 15605355 884403 complement(710672..712282) 1 NC_000117.1 integral membrane protein 712282 mviN 884403 mviN Chlamydia trachomatis D/UW-3/CX integral membrane protein NP_220141.1 710672 R 272561 CDS NP_220142.1 15605356 884404 712455..713321 1 NC_000117.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 713321 nfo 884404 nfo Chlamydia trachomatis D/UW-3/CX endonuclease IV NP_220142.1 712455 D 272561 CDS NP_220143.1 15605357 884406 complement(713418..714047) 1 NC_000117.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 714047 rpsD 884406 rpsD Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S4 NP_220143.1 713418 R 272561 CDS NP_220144.1 15605358 884407 714431..715414 1 NC_000117.1 hypothetical protein 715414 yceA 884407 yceA Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220144.1 714431 D 272561 CDS NP_220145.1 15605359 884408 complement(715486..716361) 1 NC_000117.1 dimethylallyltransferase 716361 ispA 884408 ispA Chlamydia trachomatis D/UW-3/CX dimethylallyltransferase NP_220145.1 715486 R 272561 CDS NP_220146.1 15605360 884409 complement(716417..717034) 1 NC_000117.1 glucosamine-1-phosphate acetyltransferase 717034 glmU 884409 glmU Chlamydia trachomatis D/UW-3/CX glucosamine-1-phosphate acetyltransferase NP_220146.1 716417 R 272561 CDS NP_220147.1 15605361 884417 complement(717087..717770) 1 NC_000117.1 transcriptional regulator 717770 cpxR 884417 cpxR Chlamydia trachomatis D/UW-3/CX transcriptional regulator NP_220147.1 717087 R 272561 CDS NP_220148.1 15605362 884411 717949..718203 1 NC_000117.1 hypothetical protein 718203 884411 CT631 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220148.1 717949 D 272561 CDS NP_220149.1 15605363 884421 complement(718384..719973) 1 NC_000117.1 hypothetical protein 719973 884421 CT632 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220149.1 718384 R 272561 CDS NP_220150.1 15605364 884414 720271..721287 1 NC_000117.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 721287 hemB 884414 hemB Chlamydia trachomatis D/UW-3/CX delta-aminolevulinic acid dehydratase NP_220150.1 720271 D 272561 CDS NP_220151.1 15605365 884415 complement(721313..722710) 1 NC_000117.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 722710 884415 CT634 Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit A NP_220151.1 721313 R 272561 CDS NP_220152.1 15605366 884441 complement(722732..723166) 1 NC_000117.1 hypothetical protein 723166 884441 CT635 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220152.1 722732 R 272561 CDS NP_220153.1 15605367 884416 723280..725427 1 NC_000117.1 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor 725427 greA 884416 greA Chlamydia trachomatis D/UW-3/CX transcript cleavage factor NP_220153.1 723280 D 272561 CDS NP_220154.1 15605368 884419 725615..726817 1 NC_000117.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 726817 tyrB 884419 tyrB Chlamydia trachomatis D/UW-3/CX aromatic amino acid aminotransferase NP_220154.1 725615 D 272561 CDS NP_220155.1 15605369 884420 726792..727559 1 NC_000117.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 727559 884420 CT638 Chlamydia trachomatis D/UW-3/CX rod shape-determining protein MreC NP_220155.1 726792 D 272561 CDS NP_220156.1 15605370 884428 727592..727801 1 NC_000117.1 hypothetical protein 727801 884428 CT638.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220156.1 727592 D 272561 CDS NP_220157.1 15605371 884422 complement(727817..730897) 1 NC_000117.1 exodeoxyribonuclease V beta chain 730897 recB 884422 recB Chlamydia trachomatis D/UW-3/CX exodeoxyribonuclease V beta chain NP_220157.1 727817 R 272561 CDS NP_220158.1 15605372 884423 complement(730899..733913) 1 NC_000117.1 exodeoxyribonuclease V gamma chain 733913 recC 884423 recC Chlamydia trachomatis D/UW-3/CX exodeoxyribonuclease V gamma chain NP_220158.1 730899 R 272561 CDS NP_220159.1 15605373 884424 733926..735605 1 NC_000117.1 efflux protein 735605 ygeD 884424 ygeD Chlamydia trachomatis D/UW-3/CX efflux protein NP_220159.1 733926 D 272561 CDS NP_220160.1 15605374 884425 complement(735625..736440) 1 NC_000117.1 hypothetical protein 736440 884425 CT642 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220160.1 735625 R 272561 CDS NP_220161.1 15605375 884426 737335..739908 1 NC_000117.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI 739908 topA 884426 topA Chlamydia trachomatis D/UW-3/CX DNA topoisomerase I/SWI NP_220161.1 737335 D 272561 CDS NP_220162.1 15605376 884442 complement(739938..740942) 1 NC_000117.1 oxidoreductase 740942 yohI 884442 yohI Chlamydia trachomatis D/UW-3/CX oxidoreductase NP_220162.1 739938 R 272561 CDS NP_220163.1 15605377 884427 complement(740921..741217) 1 NC_000117.1 integral membrane protein 741217 884427 CT645 Chlamydia trachomatis D/UW-3/CX integral membrane protein NP_220163.1 740921 R 272561 CDS NP_220164.1 15605378 884429 741318..742697 1 NC_000117.1 hypothetical protein 742697 884429 CT646 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220164.1 741318 D 272561 CDS NP_220165.1 15605379 884430 742697..743275 1 NC_000117.1 hypothetical protein 743275 884430 CT647 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220165.1 742697 D 272561 CDS NP_220166.1 15605380 884431 743266..744540 1 NC_000117.1 hypothetical protein 744540 884431 CT648 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220166.1 743266 D 272561 CDS NP_220167.1 15605381 884432 744543..745079 1 NC_000117.1 formyltetrahydrofolate synthetase 745079 ygfA 884432 ygfA Chlamydia trachomatis D/UW-3/CX formyltetrahydrofolate synthetase NP_220167.1 744543 D 272561 CDS NP_220168.1 15605382 884433 745340..746398 1 NC_000117.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 746398 recA 884433 recA Chlamydia trachomatis D/UW-3/CX recombinase A NP_220168.1 745340 D 272561 CDS NP_220169.1 15605383 884434 746684..748510 1 NC_000117.1 hypothetical protein 748510 884434 CT651 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220169.1 746684 D 272561 CDS NP_220170.1 15605384 884435 748507..749997 1 NC_000117.1 exodeoxyribonuclease V alpha chain 749997 recD_2 884435 recD_2 Chlamydia trachomatis D/UW-3/CX exodeoxyribonuclease V alpha chain NP_220170.1 748507 D 272561 CDS NP_220171.1 15605385 884436 750063..750242 1 NC_000117.1 hypothetical protein 750242 884436 CT652.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220171.1 750063 D 272561 CDS NP_220172.1 15605386 884437 complement(750343..751062) 1 NC_000117.1 ABC transporter ATP-binding protein 751062 yhbG 884437 yhbG Chlamydia trachomatis D/UW-3/CX ABC transporter ATP-binding protein NP_220172.1 750343 R 272561 CDS NP_220173.1 15605387 884438 complement(751071..751559) 1 NC_000117.1 hypothetical protein 751559 884438 CT654 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220173.1 751071 R 272561 CDS NP_220174.1 15605388 884439 complement(751556..752365) 1 NC_000117.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 752365 kdsA 884439 kdsA Chlamydia trachomatis D/UW-3/CX 2-dehydro-3-deoxyphosphooctonate aldolase NP_220174.1 751556 R 272561 CDS NP_220175.1 15605389 884454 752850..753143 1 NC_000117.1 hypothetical protein 753143 884454 CT656 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220175.1 752850 D 272561 CDS NP_220176.1 15605390 884443 753143..753460 1 NC_000117.1 hypothetical protein 753460 884443 CT657 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220176.1 753143 D 272561 CDS NP_220177.1 15605391 884444 753544..754548 1 NC_000117.1 ribosomal large subunit pseudouridine synthase D 754548 sfhB 884444 sfhB Chlamydia trachomatis D/UW-3/CX ribosomal large subunit pseudouridine synthase D NP_220177.1 753544 D 272561 CDS NP_220178.1 15605392 884446 754647..754883 1 NC_000117.1 hypothetical protein 754883 884446 CT659 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220178.1 754647 D 272561 CDS NP_220179.1 15605393 884445 complement(755022..756494) 1 NC_000117.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 756494 gyrA_2 884445 gyrA_2 Chlamydia trachomatis D/UW-3/CX DNA topoisomerase IV subunit A NP_220179.1 755022 R 272561 CDS NP_220180.1 15605394 884449 complement(756509..758326) 1 NC_000117.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 758326 gyrB_2 884449 gyrB_2 Chlamydia trachomatis D/UW-3/CX DNA topoisomerase IV subunit B NP_220180.1 756509 R 272561 CDS NP_220181.1 15605395 884447 758706..759713 1 NC_000117.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 759713 hemA 884447 hemA Chlamydia trachomatis D/UW-3/CX glutamyl-tRNA reductase NP_220181.1 758706 D 272561 CDS NP_220182.1 15605396 884448 760425..760826 1 NC_000117.1 hypothetical protein 760826 884448 CT663 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220182.1 760425 D 272561 CDS NP_220183.1 15605397 884462 760830..763319 1 NC_000117.1 FHA domain-containing protein 763319 884462 CT664 Chlamydia trachomatis D/UW-3/CX FHA domain-containing protein NP_220183.1 760830 D 272561 CDS NP_220184.1 15605398 884450 763363..763614 1 NC_000117.1 hypothetical protein 763614 884450 CT665 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220184.1 763363 D 272561 CDS NP_220185.1 15605399 884451 763641..763892 1 NC_000117.1 hypothetical protein 763892 884451 CT666 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220185.1 763641 D 272561 CDS NP_220186.1 15605400 884452 763911..764360 1 NC_000117.1 hypothetical protein 764360 884452 CT667 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220186.1 763911 D 272561 CDS NP_220187.1 15605401 884460 764380..765051 1 NC_000117.1 hypothetical protein 765051 884460 CT668 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220187.1 764380 D 272561 CDS NP_220188.1 15605402 884453 765053..766381 1 NC_000117.1 type III secretion system ATPase 766381 yscN 884453 yscN Chlamydia trachomatis D/UW-3/CX type III secretion system ATPase NP_220188.1 765053 D 272561 CDS NP_220189.1 15605403 884455 766404..766910 1 NC_000117.1 hypothetical protein 766910 884455 CT670 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220189.1 766404 D 272561 CDS NP_220190.1 15605404 884456 766914..767765 1 NC_000117.1 hypothetical protein 767765 884456 CT671 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220190.1 766914 D 272561 CDS NP_220191.1 15605405 884457 767775..768896 1 NC_000117.1 type III secretion system protein 768896 fliN 884457 fliN Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_220191.1 767775 D 272561 CDS NP_220192.1 15605406 884459 769031..770503 1 NC_000117.1 S/T protein kinase 770503 pkn5 884459 pkn5 Chlamydia trachomatis D/UW-3/CX S/T protein kinase NP_220192.1 769031 D 272561 CDS NP_220193.1 15605407 884465 770500..773265 1 NC_000117.1 Yop proteins translocation protein C/general secretion pathway protein 773265 yscC 884465 yscC Chlamydia trachomatis D/UW-3/CX Yop proteins translocation protein C/general secretion pathway protein NP_220193.1 770500 D 272561 CDS NP_220194.1 15605408 884461 complement(773578..774648) 1 NC_000117.1 ATP:guanido phosphotransferase 774648 karG 884461 karG Chlamydia trachomatis D/UW-3/CX ATP:guanido phosphotransferase NP_220194.1 773578 R 272561 CDS NP_220195.1 15605409 884463 complement(774638..775159) 1 NC_000117.1 hypothetical protein 775159 884463 CT676 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220195.1 774638 R 272561 CDS NP_220196.1 15605410 884466 complement(775530..776069) 1 NC_000117.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 776069 frr 884466 frr Chlamydia trachomatis D/UW-3/CX ribosome recycling factor NP_220196.1 775530 R 272561 CDS NP_220197.1 15605411 884467 complement(776066..776803) 1 NC_000117.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 776803 pyrH 884467 pyrH Chlamydia trachomatis D/UW-3/CX uridylate kinase NP_220197.1 776066 R 272561 CDS NP_220198.1 15605412 884475 complement(776816..777664) 1 NC_000117.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 777664 tsf 884475 tsf Chlamydia trachomatis D/UW-3/CX elongation factor Ts NP_220198.1 776816 R 272561 CDS NP_220199.1 15605413 884469 complement(777661..778509) 1 NC_000117.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 778509 rpsB 884469 rpsB Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S2 NP_220199.1 777661 R 272561 CDS NP_220200.1 15605414 884473 complement(778879..780060) 1 NC_000117.1 major outer membrane protein 780060 ompA 884473 ompA Chlamydia trachomatis D/UW-3/CX major outer membrane protein NP_220200.1 778879 R 272561 CDS NP_220201.1 15605415 884472 780668..783910 1 NC_000117.1 penicillin-binding protein 783910 pbpB 884472 pbpB Chlamydia trachomatis D/UW-3/CX penicillin-binding protein NP_220201.1 780668 D 272561 CDS NP_220202.1 15605416 884471 783974..784981 1 NC_000117.1 TPR-motif-containing protein 784981 884471 CT683 Chlamydia trachomatis D/UW-3/CX TPR-motif-containing protein NP_220202.1 783974 D 272561 CDS NP_220203.1 15605417 884479 785324..786775 1 NC_000117.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 786775 884479 CT684 Chlamydia trachomatis D/UW-3/CX cysteine desulfurase activator complex subunit SufB NP_220203.1 785324 D 272561 CDS NP_220204.1 15605418 884474 786778..787545 1 NC_000117.1 ABC transporter ATP-binding protein 787545 884474 CT685 Chlamydia trachomatis D/UW-3/CX ABC transporter ATP-binding protein NP_220204.1 786778 D 272561 CDS NP_220205.1 15605419 884476 787549..788736 1 NC_000117.1 ABC transporter permease 788736 884476 CT686 Chlamydia trachomatis D/UW-3/CX ABC transporter permease NP_220205.1 787549 D 272561 CDS NP_220206.1 15605420 884483 788729..789934 1 NC_000117.1 cysteine desulfurase 789934 yfhO_1 884483 yfhO_1 Chlamydia trachomatis D/UW-3/CX cysteine desulfurase NP_220206.1 788729 D 272561 CDS NP_220207.1 15605421 884477 790070..790915 1 NC_000117.1 chromosome partitioning protein 790915 parB 884477 parB Chlamydia trachomatis D/UW-3/CX chromosome partitioning protein NP_220207.1 790070 D 272561 CDS NP_220208.1 15605422 884490 complement(790907..791737) 1 NC_000117.1 peptide ABC transporter ATPase 791737 dppF 884490 dppF Chlamydia trachomatis D/UW-3/CX peptide ABC transporter ATPase NP_220208.1 790907 R 272561 CDS NP_220209.1 15605423 884478 complement(791730..792695) 1 NC_000117.1 peptide ABC transporter ATPase 792695 dppD 884478 dppD Chlamydia trachomatis D/UW-3/CX peptide ABC transporter ATPase NP_220209.1 791730 R 272561 CDS NP_220210.1 15605424 884480 792856..793530 1 NC_000117.1 hypothetical protein 793530 884480 CT691 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220210.1 792856 D 272561 CDS NP_220211.1 15605425 884481 793533..794813 1 NC_000117.1 inorganic phosphate transporter 794813 884481 CT692 Chlamydia trachomatis D/UW-3/CX inorganic phosphate transporter NP_220211.1 793533 D 272561 CDS NP_220212.1 15605426 884491 794941..796152 1 NC_000117.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 796152 pgk 884491 pgk Chlamydia trachomatis D/UW-3/CX phosphoglycerate kinase NP_220212.1 794941 D 272561 CDS NP_220213.1 15605427 884482 796412..797383 1 NC_000117.1 hypothetical protein 797383 884482 CT694 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220213.1 796412 D 272561 CDS NP_220214.1 15605428 884484 797434..798630 1 NC_000117.1 hypothetical protein 798630 884484 CT695 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220214.1 797434 D 272561 CDS NP_220215.1 15605429 884485 798716..799894 1 NC_000117.1 hypothetical protein 799894 884485 CT696 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220215.1 798716 D 272561 CDS NP_220216.1 15605430 884486 complement(799891..800526) 1 NC_000117.1 endonuclease III 800526 nth 884486 nth Chlamydia trachomatis D/UW-3/CX endonuclease III NP_220216.1 799891 R 272561 CDS NP_220217.1 15605431 884487 complement(800533..801867) 1 NC_000117.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 801867 trmE 884487 trmE Chlamydia trachomatis D/UW-3/CX tRNA modification GTPase TrmE NP_220217.1 800533 R 272561 CDS NP_220218.1 15605432 884488 802134..803039 1 NC_000117.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 803039 psdD 884488 psdD Chlamydia trachomatis D/UW-3/CX phosphatidylserine decarboxylase NP_220218.1 802134 D 272561 CDS NP_220219.1 15605433 884492 803104..804429 1 NC_000117.1 hypothetical protein 804429 884492 CT700 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220219.1 803104 D 272561 CDS NP_220220.1 15605434 884489 804688..807597 1 NC_000117.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 807597 secA 884489 secA Chlamydia trachomatis D/UW-3/CX preprotein translocase subunit SecA NP_220220.1 804688 D 272561 CDS NP_220221.1 15605435 884494 complement(807691..808218) 1 NC_000117.1 hypothetical protein 808218 884494 CT702 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220221.1 807691 R 272561 CDS NP_220222.1 15605436 884507 complement(808295..809767) 1 NC_000117.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 809767 engA 884507 engA Chlamydia trachomatis D/UW-3/CX GTP-binding protein EngA NP_220222.1 808295 R 272561 CDS NP_220223.1 15605437 884493 complement(809883..811115) 1 NC_000117.1 polyA polymerase 811115 pcnB_2 884493 pcnB_2 Chlamydia trachomatis D/UW-3/CX polyA polymerase NP_220223.1 809883 R 272561 CDS NP_220224.1 15605438 884500 complement(811130..812389) 1 NC_000117.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 812389 clpX 884500 clpX Chlamydia trachomatis D/UW-3/CX ATP-dependent protease ATP-binding subunit ClpX NP_220224.1 811130 R 272561 CDS NP_220225.1 15605439 884495 complement(812399..813010) 1 NC_000117.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 813010 clpP 884495 clpP Chlamydia trachomatis D/UW-3/CX ATP-dependent Clp protease proteolytic subunit NP_220225.1 812399 R 272561 CDS NP_220226.1 15605440 884496 complement(813177..814505) 1 NC_000117.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 814505 tig 884496 tig Chlamydia trachomatis D/UW-3/CX trigger factor NP_220226.1 813177 R 272561 CDS NP_220227.1 15605441 884498 814862..818353 1 NC_000117.1 SWF/SNF family helicase 818353 884498 CT708 Chlamydia trachomatis D/UW-3/CX SWF/SNF family helicase NP_220227.1 814862 D 272561 CDS NP_220228.1 15605442 884499 818358..819458 1 NC_000117.1 rod shape-determining protein MreB 819458 mreB 884499 mreB Chlamydia trachomatis D/UW-3/CX rod shape-determining protein MreB NP_220228.1 818358 D 272561 CDS NP_220229.1 15605443 884505 819455..821254 1 NC_000117.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 821254 pckA 884505 pckA Chlamydia trachomatis D/UW-3/CX phosphoenolpyruvate carboxykinase NP_220229.1 819455 D 272561 CDS NP_220230.1 15605444 884501 821366..823669 1 NC_000117.1 hypothetical protein 823669 884501 CT711 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220230.1 821366 D 272561 CDS NP_220231.1 15605445 884502 823696..824868 1 NC_000117.1 hypothetical protein 824868 884502 CT712 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220231.1 823696 D 272561 CDS NP_220232.1 15605446 884503 complement(824894..825916) 1 NC_000117.1 outer membrane protein B 825916 porB 884503 porB Chlamydia trachomatis D/UW-3/CX outer membrane protein B NP_220232.1 824894 R 272561 CDS NP_220233.1 15605447 884504 complement(826049..827053) 1 NC_000117.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 827053 gpsA 884504 gpsA Chlamydia trachomatis D/UW-3/CX NAD(P)H-dependent glycerol-3-phosphate dehydrogenase NP_220233.1 826049 R 272561 CDS NP_220234.1 15605448 884510 complement(827050..828417) 1 NC_000117.1 UDP-N-acetylglucosamine pyrophosphorylase 828417 884510 CT715 Chlamydia trachomatis D/UW-3/CX UDP-N-acetylglucosamine pyrophosphorylase NP_220234.1 827050 R 272561 CDS NP_220235.1 15605449 884506 complement(828429..828794) 1 NC_000117.1 hypothetical protein 828794 884506 CT716 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220235.1 828429 R 272561 CDS NP_220236.1 15605450 884508 complement(828787..830091) 1 NC_000117.1 involved in type III protein export; type III secretion system ATPase 830091 fliI 884508 fliI Chlamydia trachomatis D/UW-3/CX type III secretion system ATPase NP_220236.1 828787 R 272561 CDS NP_220237.1 15605451 884528 complement(830165..830689) 1 NC_000117.1 hypothetical protein 830689 884528 CT718 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220237.1 830165 R 272561 CDS NP_220238.1 15605452 884509 complement(830694..831698) 1 NC_000117.1 type III secretion system protein 831698 fliF 884509 fliF Chlamydia trachomatis D/UW-3/CX type III secretion system protein NP_220238.1 830694 R 272561 CDS NP_220239.1 15605453 884511 complement(831971..832753) 1 NC_000117.1 NifU-related protein 832753 884511 CT720 Chlamydia trachomatis D/UW-3/CX NifU-related protein NP_220239.1 831971 R 272561 CDS NP_220240.1 15605454 884512 complement(832750..833904) 1 NC_000117.1 NifS-related protein 833904 yfhO_2 884512 yfhO_2 Chlamydia trachomatis D/UW-3/CX NifS-related protein NP_220240.1 832750 R 272561 CDS NP_220241.1 15605455 884513 complement(833859..834539) 1 NC_000117.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 834539 pgm 884513 pgm Chlamydia trachomatis D/UW-3/CX phosphoglyceromutase NP_220241.1 833859 R 272561 CDS NP_220242.1 15605456 884514 834836..835561 1 NC_000117.1 ribosomal large subunit pseudouridine synthase B 835561 yjbC 884514 yjbC Chlamydia trachomatis D/UW-3/CX ribosomal large subunit pseudouridine synthase B NP_220242.1 834836 D 272561 CDS NP_220243.1 15605457 884515 835680..836204 1 NC_000117.1 hypothetical protein 836204 884515 CT724 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220243.1 835680 D 272561 CDS NP_220244.1 15605458 884517 836231..836785 1 NC_000117.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 836785 birA 884517 birA Chlamydia trachomatis D/UW-3/CX biotin--protein ligase NP_220244.1 836231 D 272561 CDS NP_220245.1 15605459 884516 complement(836792..837931) 1 NC_000117.1 rod shape protein 837931 rodA 884516 rodA Chlamydia trachomatis D/UW-3/CX rod shape protein NP_220245.1 836792 R 272561 CDS NP_220246.1 15605460 884518 complement(838023..840002) 1 NC_000117.1 metal transport P-type ATPase 840002 zntA 884518 zntA Chlamydia trachomatis D/UW-3/CX metal transport P-type ATPase NP_220246.1 838023 R 272561 CDS NP_220247.1 15605461 884522 complement(840026..840772) 1 NC_000117.1 hypothetical protein 840772 884522 CT728 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220247.1 840026 R 272561 CDS NP_220248.1 15605462 884519 complement(840809..842095) 1 NC_000117.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 842095 serS 884519 serS Chlamydia trachomatis D/UW-3/CX seryl-tRNA synthetase NP_220248.1 840809 R 272561 CDS NP_220249.1 15605463 884520 842137..843264 1 NC_000117.1 riboflavin deaminase 843264 ribD 884520 ribD Chlamydia trachomatis D/UW-3/CX riboflavin deaminase NP_220249.1 842137 D 272561 CDS NP_220250.1 15605464 884521 843374..844648 1 NC_000117.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 844648 ribA/ribB 884521 ribA/ribB Chlamydia trachomatis D/UW-3/CX bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein NP_220250.1 843374 D 272561 CDS NP_220251.1 15605465 884527 844617..845090 1 NC_000117.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 845090 ribH 884527 ribH Chlamydia trachomatis D/UW-3/CX 6,7-dimethyl-8-ribityllumazine synthase NP_220251.1 844617 D 272561 CDS NP_220252.1 15605466 884523 complement(845141..846487) 1 NC_000117.1 hypothetical protein 846487 884523 CT733 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220252.1 845141 R 272561 CDS NP_220253.1 15605467 884524 846872..847537 1 NC_000117.1 hypothetical protein 847537 884524 CT734 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220253.1 846872 D 272561 CDS NP_220254.1 15605468 884525 847642..849009 1 NC_000117.1 Na(+)-linked D-alanine glycine permease 849009 dagA_2 884525 dagA_2 Chlamydia trachomatis D/UW-3/CX Na(+)-linked D-alanine glycine permease NP_220254.1 847642 D 272561 CDS NP_220255.1 15605469 884536 849067..849519 1 NC_000117.1 hypothetical protein 849519 ybcL 884536 ybcL Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220255.1 849067 D 272561 CDS NP_220256.1 15605470 884533 complement(849528..850187) 1 NC_000117.1 SET domain containing protein 850187 884533 CT737 Chlamydia trachomatis D/UW-3/CX SET domain containing protein NP_220256.1 849528 R 272561 CDS NP_220257.1 15605471 884526 complement(850184..850972) 1 NC_000117.1 Zn-dependent hydrolase 850972 yycJ 884526 yycJ Chlamydia trachomatis D/UW-3/CX Zn-dependent hydrolase NP_220257.1 850184 R 272561 CDS NP_220258.1 15605472 884529 complement(850976..853375) 1 NC_000117.1 cell division protein FtsK 853375 ftsK 884529 ftsK Chlamydia trachomatis D/UW-3/CX cell division protein FtsK NP_220258.1 850976 R 272561 CDS NP_220259.1 15605473 884545 complement(859615..860910) 1 NC_000117.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 860910 dmpP 884545 dmpP Chlamydia trachomatis D/UW-3/CX Na(+)-translocating NADH-quinone reductase subunit F NP_220259.1 859615 R 272561 CDS NP_220260.1 15605474 884535 complement(861053..861397) 1 NC_000117.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 861397 yajC 884535 yajC Chlamydia trachomatis D/UW-3/CX preprotein translocase subunit YajC NP_220260.1 861053 R 272561 CDS NP_220261.1 15605475 884537 complement(861502..862692) 1 NC_000117.1 rRNA methyltransferase 862692 ygcA 884537 ygcA Chlamydia trachomatis D/UW-3/CX rRNA methyltransferase NP_220261.1 861502 R 272561 CDS NP_220262.1 15605476 884538 complement(862880..863257) 1 NC_000117.1 histone-like developmental protein 863257 hctA 884538 hctA Chlamydia trachomatis D/UW-3/CX histone-like developmental protein NP_220262.1 862880 R 272561 CDS NP_220263.1 15605477 884539 863653..866118 1 NC_000117.1 CHLTR phosphoprotein 866118 884539 CT744 Chlamydia trachomatis D/UW-3/CX CHLTR phosphoprotein NP_220263.1 863653 D 272561 CDS NP_220264.1 15605478 884540 complement(866113..867387) 1 NC_000117.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 867387 hemG 884540 hemG Chlamydia trachomatis D/UW-3/CX protoporphyrinogen oxidase NP_220264.1 866113 R 272561 CDS NP_220265.1 15605479 884541 complement(867384..868757) 1 NC_000117.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 868757 hemN_2 884541 hemN_2 Chlamydia trachomatis D/UW-3/CX coproporphyrinogen III oxidase NP_220265.1 867384 R 272561 CDS NP_220266.1 15605480 884542 complement(868730..869740) 1 NC_000117.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 869740 hemE 884542 hemE Chlamydia trachomatis D/UW-3/CX uroporphyrinogen decarboxylase NP_220266.1 868730 R 272561 CDS NP_220267.1 15605481 884556 complement(869753..872992) 1 NC_000117.1 transcription-repair coupling factor 872992 mfd 884556 mfd Chlamydia trachomatis D/UW-3/CX transcription-repair coupling factor NP_220267.1 869753 R 272561 CDS NP_220268.1 15605482 884543 complement(872968..875595) 1 NC_000117.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 875595 alaS 884543 alaS Chlamydia trachomatis D/UW-3/CX alanyl-tRNA synthetase NP_220268.1 872968 R 272561 CDS NP_220269.1 15605483 884548 881422..883422 1 NC_000117.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 883422 tktB 884548 tktB Chlamydia trachomatis D/UW-3/CX transketolase NP_220269.1 881422 D 272561 CDS NP_220270.1 15605484 884549 complement(883419..884288) 1 NC_000117.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 884288 amn 884549 amn Chlamydia trachomatis D/UW-3/CX AMP nucleosidase NP_220270.1 883419 R 272561 CDS NP_220271.1 15605485 884550 884508..885080 1 NC_000117.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 885080 efp_2 884550 efp_2 Chlamydia trachomatis D/UW-3/CX elongation factor P NP_220271.1 884508 D 272561 CDS NP_220272.1 15605486 884551 complement(885096..885320) 1 NC_000117.1 hypothetical protein 885320 884551 CT753 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220272.1 885096 R 272561 CDS NP_220273.1 15605487 884552 complement(885367..886239) 1 NC_000117.1 phosphohydrolase 886239 icc 884552 icc Chlamydia trachomatis D/UW-3/CX phosphohydrolase NP_220273.1 885367 R 272561 CDS NP_220274.1 15605488 884553 complement(886320..887858) 1 NC_000117.1 molecular chaperone GroEL 887858 groEL_3 884553 groEL_3 Chlamydia trachomatis D/UW-3/CX molecular chaperone GroEL NP_220274.1 886320 R 272561 CDS NP_220275.1 15605489 884555 888306..889658 1 NC_000117.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 889658 murF 884555 murF Chlamydia trachomatis D/UW-3/CX UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase NP_220275.1 888306 D 272561 CDS NP_220276.1 15605490 884554 889804..890814 1 NC_000117.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 890814 mraY 884554 mraY Chlamydia trachomatis D/UW-3/CX phospho-N-acetylmuramoyl-pentapeptide- transferase NP_220276.1 889804 D 272561 CDS NP_220277.1 15605491 884569 890826..892076 1 NC_000117.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 892076 murD 884569 murD Chlamydia trachomatis D/UW-3/CX UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase NP_220277.1 890826 D 272561 CDS NP_220278.1 15605492 884559 892073..892810 1 NC_000117.1 muramidase 892810 nlpD 884559 nlpD Chlamydia trachomatis D/UW-3/CX muramidase NP_220278.1 892073 D 272561 CDS NP_220279.1 15605493 884560 892826..893983 1 NC_000117.1 cell division protein FtsW 893983 ftsW 884560 ftsW Chlamydia trachomatis D/UW-3/CX cell division protein FtsW NP_220279.1 892826 D 272561 CDS NP_220280.1 15605494 884557 893892..894950 1 NC_000117.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 894950 murG 884557 murG Chlamydia trachomatis D/UW-3/CX UDP diphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_220280.1 893892 D 272561 CDS NP_220281.1 15605495 884562 894955..897366 1 NC_000117.1 catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 897366 murC/ddlA 884562 murC/ddlA Chlamydia trachomatis D/UW-3/CX bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase NP_220281.1 894955 D 272561 CDS NP_220282.1 15605496 884558 complement(897403..897822) 1 NC_000117.1 hypothetical protein 897822 884558 CT763 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220282.1 897403 R 272561 CDS NP_220283.1 15605497 884576 complement(897980..898786) 1 NC_000117.1 hypothetical protein 898786 884576 CT764 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220283.1 897980 R 272561 CDS NP_220284.1 15605498 884561 898940..899272 1 NC_000117.1 anti-sigma F factor antagonist 899272 rsbV_2 884561 rsbV_2 Chlamydia trachomatis D/UW-3/CX anti-sigma F factor antagonist NP_220284.1 898940 D 272561 CDS NP_220285.1 15605499 884567 899276..900295 1 NC_000117.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 900295 miaA 884567 miaA Chlamydia trachomatis D/UW-3/CX tRNA delta(2)-isopentenylpyrophosphate transferase NP_220285.1 899276 D 272561 CDS NP_220286.1 15605500 884564 complement(900300..901352) 1 NC_000117.1 hypothetical protein 901352 884564 CT767 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220286.1 900300 R 272561 CDS NP_220287.1 15605501 884195 901442..903130 1 NC_000117.1 hypothetical protein 903130 884195 CT768 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220287.1 901442 D 272561 CDS NP_220288.1 15605502 884565 903584..903943 1 NC_000117.1 iojap superfamily protein 903943 ybeB 884565 ybeB Chlamydia trachomatis D/UW-3/CX iojap superfamily protein NP_220288.1 903584 D 272561 CDS NP_220289.1 15605503 884566 903954..905210 1 NC_000117.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase II 905210 fabF 884566 fabF Chlamydia trachomatis D/UW-3/CX 3-oxoacyl-ACP synthase II NP_220289.1 903954 D 272561 CDS NP_220290.1 15605504 884568 905207..905659 1 NC_000117.1 hydrolase/phosphatase-like protein 905659 884568 CT771 Chlamydia trachomatis D/UW-3/CX hydrolase/phosphatase-like protein NP_220290.1 905207 D 272561 CDS NP_220291.1 15605505 884578 complement(905740..906369) 1 NC_000117.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 906369 ppa 884578 ppa Chlamydia trachomatis D/UW-3/CX inorganic pyrophosphatase NP_220291.1 905740 R 272561 CDS NP_220292.1 15605506 884570 906617..907657 1 NC_000117.1 leucine dehydrogenase 907657 ldh 884570 ldh Chlamydia trachomatis D/UW-3/CX leucine dehydrogenase NP_220292.1 906617 D 272561 CDS NP_220293.1 15605507 884571 complement(907623..908651) 1 NC_000117.1 3'(2'),5'-bisphosphate nucleotidase 908651 cysQ 884571 cysQ Chlamydia trachomatis D/UW-3/CX 3'(2'),5'-bisphosphate nucleotidase NP_220293.1 907623 R 272561 CDS NP_220294.1 15605508 884572 908950..909711 1 NC_000117.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 909711 884572 CT775 Chlamydia trachomatis D/UW-3/CX 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_220294.1 908950 D 272561 CDS NP_220295.1 15605509 884573 909719..911332 1 NC_000117.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase 911332 aas 884573 aas Chlamydia trachomatis D/UW-3/CX long chain fatty acid--ACP ligase NP_220295.1 909719 D 272561 CDS NP_220296.1 15605510 884580 911375..912508 1 NC_000117.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 912508 bioF 884580 bioF Chlamydia trachomatis D/UW-3/CX 8-amino-7-oxononanoate synthase NP_220296.1 911375 D 272561 CDS NP_220297.1 15605511 884574 complement(912427..914688) 1 NC_000117.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 914688 priA 884574 priA Chlamydia trachomatis D/UW-3/CX primosome assembly protein PriA NP_220297.1 912427 R 272561 CDS NP_220298.1 15605512 884575 complement(914643..915332) 1 NC_000117.1 hypothetical protein 915332 884575 CT779 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220298.1 914643 R 272561 CDS NP_220299.1 15605513 884577 915488..915982 1 NC_000117.1 protein disulfide isomerase 915982 884577 CT780 Chlamydia trachomatis D/UW-3/CX protein disulfide isomerase NP_220299.1 915488 D 272561 CDS NP_220300.1 15605514 884579 916214..917794 1 NC_000117.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 917794 lysS 884579 lysS Chlamydia trachomatis D/UW-3/CX lysyl-tRNA synthetase NP_220300.1 916214 D 272561 CDS NP_220301.1 15605515 884587 complement(917791..919284) 1 NC_000117.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 919284 cysS 884587 cysS Chlamydia trachomatis D/UW-3/CX cysteinyl-tRNA synthetase NP_220301.1 917791 R 272561 CDS NP_220302.1 15605516 884583 919539..920588 1 NC_000117.1 disulfide bond isomerase 920588 884583 CT783 Chlamydia trachomatis D/UW-3/CX disulfide bond isomerase NP_220302.1 919539 D 272561 CDS NP_220303.1 15605517 884581 complement(920666..921028) 1 NC_000117.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 921028 rnpA 884581 rnpA Chlamydia trachomatis D/UW-3/CX ribonuclease P NP_220303.1 920666 R 272561 CDS NP_220304.1 15605518 884582 complement(921041..921178) 1 NC_000117.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 921178 rpmH 884582 rpmH Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L34 NP_220304.1 921041 R 272561 CDS NP_220305.1 15605519 884589 921655..921792 1 NC_000117.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 921792 rpmJ 884589 rpmJ Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L36 NP_220305.1 921655 D 272561 CDS NP_220306.1 15605520 884584 921816..922121 1 NC_000117.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 922121 rpsN 884584 rpsN Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S14 NP_220306.1 921816 D 272561 CDS NP_220307.1 15605521 884590 complement(922155..922655) 1 NC_000117.1 leader (60) peptide-periplasmic 922655 884590 CT788 Chlamydia trachomatis D/UW-3/CX leader (60) peptide-periplasmic NP_220307.1 922155 R 272561 CDS NP_220308.1 15605522 884585 complement(922777..923028) 1 NC_000117.1 hypothetical protein 923028 884585 CT789 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220308.1 922777 R 272561 CDS NP_220309.1 15605523 884586 923307..923801 1 NC_000117.1 hypothetical protein 923801 884586 CT790 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220309.1 923307 D 272561 CDS NP_220310.1 15605524 884594 complement(923846..925642) 1 NC_000117.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 925642 uvrC 884594 uvrC Chlamydia trachomatis D/UW-3/CX excinuclease ABC subunit C NP_220310.1 923846 R 272561 CDS NP_220311.1 15605525 884588 complement(925667..928129) 1 NC_000117.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 928129 mutS 884588 mutS Chlamydia trachomatis D/UW-3/CX DNA mismatch repair protein MutS NP_220311.1 925667 R 272561 CDS NP_220312.1 15605526 884591 928192..928461 1 NC_000117.1 hypothetical protein 928461 884591 CT793 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220312.1 928192 D 272561 CDS NP_220313.1 15605527 884592 928463..930250 1 NC_000117.1 synthesizes RNA primers at the replication forks; DNA primase 930250 dnaG 884592 dnaG Chlamydia trachomatis D/UW-3/CX DNA primase NP_220313.1 928463 D 272561 CDS NP_220314.1 15605528 884598 930335..930622 1 NC_000117.1 hypothetical protein 930622 884598 CT794.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220314.1 930335 D 272561 CDS NP_220315.1 15605529 884593 930749..931240 1 NC_000117.1 hypothetical protein 931240 884593 CT795 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220315.1 930749 D 272561 CDS NP_220316.1 15605530 884595 complement(931322..934333) 1 NC_000117.1 glycyl-tRNA synthetase 934333 glyQ 884595 glyQ Chlamydia trachomatis D/UW-3/CX glycyl-tRNA synthetase NP_220316.1 931322 R 272561 CDS NP_220317.1 15605531 884596 934794..935402 1 NC_000117.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 935402 pgsA_2 884596 pgsA_2 Chlamydia trachomatis D/UW-3/CX CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase NP_220317.1 934794 D 272561 CDS NP_220318.1 15605532 884597 complement(935409..936833) 1 NC_000117.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 936833 glgA 884597 glgA Chlamydia trachomatis D/UW-3/CX glycogen synthase NP_220318.1 935409 R 272561 CDS NP_220319.1 15605533 884205 937410..937967 1 NC_000117.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 937967 ctc 884205 ctc Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L25 NP_220319.1 937410 D 272561 CDS NP_220320.1 15605534 884599 937975..938514 1 NC_000117.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 938514 pth 884599 pth Chlamydia trachomatis D/UW-3/CX peptidyl-tRNA hydrolase NP_220320.1 937975 D 272561 CDS NP_220321.1 15605535 884601 938652..938990 1 NC_000117.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 938990 rpsF 884601 rpsF Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S6 NP_220321.1 938652 D 272561 CDS NP_220322.1 15605536 884602 939007..939252 1 NC_000117.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 939252 rpsR 884602 rpsR Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S18 NP_220322.1 939007 D 272561 CDS NP_220323.1 15605537 884603 939273..939776 1 NC_000117.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 939776 rplI 884603 rplI Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L9 NP_220323.1 939273 D 272561 CDS NP_220324.1 15605538 884606 939840..940706 1 NC_000117.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 940706 ychB 884606 ychB Chlamydia trachomatis D/UW-3/CX 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_220324.1 939840 D 272561 CDS NP_220325.1 15605539 884604 complement(941009..942361) 1 NC_000117.1 hypothetical protein 942361 884604 CT805 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220325.1 941009 R 272561 CDS NP_220326.1 15605540 884609 complement(942540..945410) 1 NC_000117.1 insulinase family/protease III 945410 ptr 884609 ptr Chlamydia trachomatis D/UW-3/CX insulinase family/protease III NP_220326.1 942540 R 272561 CDS NP_220327.1 15605541 884605 complement(945467..946462) 1 NC_000117.1 glycerol-3-phosphate acyltransferase 946462 plsB 884605 plsB Chlamydia trachomatis D/UW-3/CX glycerol-3-phosphate acyltransferase NP_220327.1 945467 R 272561 CDS NP_220328.1 15605542 884607 complement(946475..948013) 1 NC_000117.1 ribonuclease E 948013 cafE 884607 cafE Chlamydia trachomatis D/UW-3/CX ribonuclease E NP_220328.1 946475 R 272561 CDS NP_220329.1 15605543 884608 948577..948888 1 NC_000117.1 hypothetical protein 948888 884608 CT809 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220329.1 948577 D 272561 CDS NP_220330.1 15605544 884612 949148..949327 1 NC_000117.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 949327 rpmF 884612 rpmF Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L32 NP_220330.1 949148 D 272561 CDS NP_220331.1 15605545 884610 949350..950315 1 NC_000117.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 950315 plsX 884610 plsX Chlamydia trachomatis D/UW-3/CX glycerol-3-phosphate acyltransferase PlsX NP_220331.1 949350 D 272561 CDS NP_220332.1 15605546 884611 950536..955131 1 NC_000117.1 polymorphic outer membrane protein 955131 pmpD 884611 pmpD Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220332.1 950536 D 272561 CDS NP_220333.1 15605547 884614 955374..956168 1 NC_000117.1 hypothetical protein 956168 884614 CT813 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220333.1 955374 D 272561 CDS NP_220334.1 15605548 884616 complement(956252..956653) 1 NC_000117.1 hypothetical protein 956653 884616 CT814 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220334.1 956252 R 272561 CDS NP_220335.1 15605549 884615 complement(956572..956934) 1 NC_000117.1 hypothetical protein 956934 884615 CT814.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220335.1 956572 R 272561 CDS NP_220336.1 15605550 884613 957180..958556 1 NC_000117.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 958556 glmM 884613 glmM Chlamydia trachomatis D/UW-3/CX phosphoglucosamine mutase NP_220336.1 957180 D 272561 CDS NP_220337.1 15605551 884625 958567..960387 1 NC_000117.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 960387 glmS 884625 glmS Chlamydia trachomatis D/UW-3/CX glucosamine--fructose-6-phosphate aminotransferase NP_220337.1 958567 D 272561 CDS NP_220338.1 15605552 884618 960490..961686 1 NC_000117.1 tyrosine transporter 961686 tyrP_1 884618 tyrP_1 Chlamydia trachomatis D/UW-3/CX tyrosine transporter NP_220338.1 960490 D 272561 CDS NP_220339.1 15605553 884617 961868..963061 1 NC_000117.1 tyrosine transporter 963061 tyrP_2 884617 tyrP_2 Chlamydia trachomatis D/UW-3/CX tyrosine transporter NP_220339.1 961868 D 272561 CDS NP_220340.1 15605554 884619 963103..963819 1 NC_000117.1 transport permease 963819 yccA 884619 yccA Chlamydia trachomatis D/UW-3/CX transport permease NP_220340.1 963103 D 272561 CDS NP_220341.1 15605555 884620 complement(963917..964771) 1 NC_000117.1 cell division protein FtsY 964771 ftsY 884620 ftsY Chlamydia trachomatis D/UW-3/CX cell division protein FtsY NP_220341.1 963917 R 272561 CDS NP_220342.1 15605556 884621 964841..966001 1 NC_000117.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 966001 sucC 884621 sucC Chlamydia trachomatis D/UW-3/CX succinyl-CoA synthetase subunit beta NP_220342.1 964841 D 272561 CDS NP_220343.1 15605557 884622 966016..966891 1 NC_000117.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 966891 sucD 884622 sucD Chlamydia trachomatis D/UW-3/CX succinyl-CoA synthetase subunit alpha NP_220343.1 966016 D 272561 CDS NP_220344.1 15605558 884623 967030..968523 1 NC_000117.1 DO serine protease 968523 htrA 884623 htrA Chlamydia trachomatis D/UW-3/CX DO serine protease NP_220344.1 967030 D 272561 CDS NP_220345.1 15605559 884626 968723..971647 1 NC_000117.1 zinc metalloprotease 971647 884626 CT824 Chlamydia trachomatis D/UW-3/CX zinc metalloprotease NP_220345.1 968723 D 272561 CDS NP_220346.1 15605560 884660 complement(971661..972944) 1 NC_000117.1 hypothetical protein 972944 884660 CT825 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220346.1 971661 R 272561 CDS NP_220347.1 15605561 884624 complement(972948..973739) 1 NC_000117.1 CDP-diacylglycerol--serine O-phosphatidyltransferase 973739 pssA 884624 pssA Chlamydia trachomatis D/UW-3/CX CDP-diacylglycerol--serine O-phosphatidyltransferase NP_220347.1 972948 R 272561 CDS NP_220348.1 15605562 884629 974375..977518 1 NC_000117.1 catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 977518 nrdA 884629 nrdA Chlamydia trachomatis D/UW-3/CX ribonucleotide-diphosphate reductase subunit alpha NP_220348.1 974375 D 272561 CDS NP_220349.1 15605563 884627 977556..978596 1 NC_000117.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 978596 nrdB 884627 nrdB Chlamydia trachomatis D/UW-3/CX ribonucleotide-diphosphate reductase subunit beta NP_220349.1 977556 D 272561 CDS NP_220350.2 161723221 884628 978856..979530 1 NC_000117.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 979530 trmB 884628 trmB Chlamydia trachomatis D/UW-3/CX tRNA (guanine-N(7)-)-methyltransferase NP_220350.2 978856 D 272561 CDS NP_220351.1 15605565 884633 979646..980230 1 NC_000117.1 rRNA methylase 980230 ytgB_2 884633 ytgB_2 Chlamydia trachomatis D/UW-3/CX rRNA methylase NP_220351.1 979646 D 272561 CDS NP_220352.1 15605566 884631 complement(980227..981102) 1 NC_000117.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 981102 murB 884631 murB Chlamydia trachomatis D/UW-3/CX UDP-N-acetylenolpyruvoylglucosamine reductase NP_220352.1 980227 R 272561 CDS NP_220353.1 15605567 884632 complement(981235..981741) 1 NC_000117.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 981741 nusB 884632 nusB Chlamydia trachomatis D/UW-3/CX transcription antitermination protein NusB NP_220353.1 981235 R 272561 CDS NP_220354.1 15605568 884636 982172..982699 1 NC_000117.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 982699 infC 884636 infC Chlamydia trachomatis D/UW-3/CX translation initiation factor IF-3 NP_220354.1 982172 D 272561 CDS NP_220355.1 15605569 884641 982710..982904 1 NC_000117.1 50S ribosomal protein L35 982904 rpmI 884641 rpmI Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L35 NP_220355.1 982710 D 272561 CDS NP_220356.1 15605570 884634 982923..983294 1 NC_000117.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 983294 rplT 884634 rplT Chlamydia trachomatis D/UW-3/CX 50S ribosomal protein L20 NP_220356.1 982923 D 272561 CDS NP_220357.1 15605571 884635 983301..984329 1 NC_000117.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 984329 pheS 884635 pheS Chlamydia trachomatis D/UW-3/CX phenylalanyl-tRNA synthetase subunit alpha NP_220357.1 983301 D 272561 CDS NP_220358.1 15605572 884638 984639..986615 1 NC_000117.1 hypothetical protein 986615 884638 CT837 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220358.1 984639 D 272561 CDS NP_220359.1 15605573 884639 complement(986612..987712) 1 NC_000117.1 hypothetical protein 987712 884639 CT838 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220359.1 986612 R 272561 CDS NP_220360.1 15605574 884640 complement(987715..988779) 1 NC_000117.1 hypothetical protein 988779 884640 CT839 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220360.1 987715 R 272561 CDS NP_220361.1 15605575 884642 988877..989842 1 NC_000117.1 PP-loop superfamily ATPase 989842 mesJ 884642 mesJ Chlamydia trachomatis D/UW-3/CX PP-loop superfamily ATPase NP_220361.1 988877 D 272561 CDS NP_220362.1 15605576 884646 990003..992744 1 NC_000117.1 ATP-dependent zinc protease 992744 ftsH 884646 ftsH Chlamydia trachomatis D/UW-3/CX ATP-dependent zinc protease NP_220362.1 990003 D 272561 CDS NP_220363.1 15605577 884643 complement(992959..995046) 1 NC_000117.1 polynucleotide phosphorylase/polyadenylase 995046 pnp 884643 pnp Chlamydia trachomatis D/UW-3/CX polynucleotide phosphorylase/polyadenylase NP_220363.1 992959 R 272561 CDS NP_220364.1 15605578 884645 complement(995075..995344) 1 NC_000117.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 995344 rpsO 884645 rpsO Chlamydia trachomatis D/UW-3/CX 30S ribosomal protein S15 NP_220364.1 995075 R 272561 CDS NP_220365.1 15605579 884202 995570..996061 1 NC_000117.1 cytosine deaminase 996061 yfhC 884202 yfhC Chlamydia trachomatis D/UW-3/CX cytosine deaminase NP_220365.1 995570 D 272561 CDS NP_220366.1 15605580 884647 996033..996311 1 NC_000117.1 hypothetical protein 996311 884647 CT845 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220366.1 996033 D 272561 CDS NP_220367.1 15605581 884644 complement(996283..996987) 1 NC_000117.1 hypothetical protein 996987 884644 CT846 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220367.1 996283 R 272561 CDS NP_220368.1 15605582 884648 complement(997122..997640) 1 NC_000117.1 hypothetical protein 997640 884648 CT847 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220368.1 997122 R 272561 CDS NP_220369.1 15605583 884679 complement(997656..998162) 1 NC_000117.1 hypothetical protein 998162 884679 CT848 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220369.1 997656 R 272561 CDS NP_220370.1 15605584 884654 complement(998190..998669) 1 NC_000117.1 hypothetical protein 998669 884654 CT849 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220370.1 998190 R 272561 CDS NP_220371.1 15605585 884649 998988..999176 1 NC_000117.1 hypothetical protein 999176 884649 CT849.1 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220371.1 998988 D 272561 CDS NP_220372.1 15605586 884650 999195..1000412 1 NC_000117.1 hypothetical protein 1000412 884650 CT850 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220372.1 999195 D 272561 CDS NP_220373.1 15605587 884653 complement(1000369..1001244) 1 NC_000117.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 1001244 map 884653 map Chlamydia trachomatis D/UW-3/CX methionine aminopeptidase NP_220373.1 1000369 R 272561 CDS NP_220374.1 15605588 884651 complement(1001302..1001916) 1 NC_000117.1 YhgN family protein 1001916 yhgN 884651 yhgN Chlamydia trachomatis D/UW-3/CX YhgN family protein NP_220374.1 1001302 R 272561 CDS NP_220375.1 15605589 884652 complement(1001934..1002533) 1 NC_000117.1 hypothetical protein 1002533 884652 CT853 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220375.1 1001934 R 272561 CDS NP_220376.1 15605590 884655 complement(1002728..1004497) 1 NC_000117.1 ABC transporter permease 1004497 884655 CT854 Chlamydia trachomatis D/UW-3/CX ABC transporter permease NP_220376.1 1002728 R 272561 CDS NP_220377.1 15605591 884656 1004550..1005941 1 NC_000117.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1005941 fumC 884656 fumC Chlamydia trachomatis D/UW-3/CX fumarate hydratase NP_220377.1 1004550 D 272561 CDS NP_220378.1 15605592 884657 complement(1006022..1007725) 1 NC_000117.1 sulfate transporter 1007725 ychM 884657 ychM Chlamydia trachomatis D/UW-3/CX sulfate transporter NP_220378.1 1006022 R 272561 CDS NP_220379.1 15605593 884658 1008482..1009747 1 NC_000117.1 Na+/H+ antiporter 1009747 884658 CT857 Chlamydia trachomatis D/UW-3/CX Na+/H+ antiporter NP_220379.1 1008482 D 272561 CDS NP_220380.1 15605594 884659 1009861..1011666 1 NC_000117.1 protease 1011666 884659 CT858 Chlamydia trachomatis D/UW-3/CX protease NP_220380.1 1009861 D 272561 CDS NP_220381.1 15605595 884663 1011761..1012684 1 NC_000117.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1012684 ispH 884663 ispH Chlamydia trachomatis D/UW-3/CX 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_220381.1 1011761 D 272561 CDS NP_220382.1 15605596 884661 complement(1012736..1014217) 1 NC_000117.1 hypothetical protein 1014217 884661 CT860 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220382.1 1012736 R 272561 CDS NP_220383.1 15605597 884662 complement(1014229..1015749) 1 NC_000117.1 hypothetical protein 1015749 884662 CT861 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220383.1 1014229 R 272561 CDS NP_220384.1 15605598 884665 complement(1015776..1016372) 1 NC_000117.1 type III secretion chaperone 1016372 lcrH_2 884665 lcrH_2 Chlamydia trachomatis D/UW-3/CX type III secretion chaperone NP_220384.1 1015776 R 272561 CDS NP_220385.1 15605599 884664 complement(1016294..1017742) 1 NC_000117.1 hypothetical protein 1017742 884664 CT863 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220385.1 1016294 R 272561 CDS NP_220386.1 15605600 884666 complement(1018603..1019505) 1 NC_000117.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1019505 xerD 884666 xerD Chlamydia trachomatis D/UW-3/CX site-specific tyrosine recombinase XerD NP_220386.1 1018603 R 272561 CDS NP_220387.1 15605601 884668 1019754..1020743 1 NC_000117.1 hypothetical protein 1020743 884668 CT865 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220387.1 1019754 D 272561 CDS NP_220388.1 15605602 884667 1020758..1022974 1 NC_000117.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1022974 glgB 884667 glgB Chlamydia trachomatis D/UW-3/CX glycogen branching enzyme NP_220388.1 1020758 D 272561 CDS NP_220389.1 15605603 884676 complement(1022985..1024004) 1 NC_000117.1 hypothetical protein 1024004 884676 CT867 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220389.1 1022985 R 272561 CDS NP_220390.1 15605604 884669 complement(1024215..1025471) 1 NC_000117.1 hypothetical protein 1025471 884669 CT868 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220390.1 1024215 R 272561 CDS NP_220391.1 15605605 884671 complement(1025648..1028542) 1 NC_000117.1 polymorphic outer membrane protein 1028542 pmpE 884671 pmpE Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220391.1 1025648 R 272561 CDS NP_220392.1 15605606 884672 complement(1028545..1031649) 1 NC_000117.1 polymorphic outer membrane protein 1031649 pmpF 884672 pmpF Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220392.1 1028545 R 272561 CDS NP_220393.1 15605607 884677 1031814..1034855 1 NC_000117.1 polymorphic outer membrane protein 1034855 pmpG 884677 pmpG Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220393.1 1031814 D 272561 CDS NP_220394.1 15605608 884673 1034886..1037936 1 NC_000117.1 polymorphic outer membrane protein 1037936 pmpH 884673 pmpH Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220394.1 1034886 D 272561 CDS NP_220395.1 15605609 884674 1038518..1038835 1 NC_000117.1 hypothetical protein 1038835 884674 CT873 Chlamydia trachomatis D/UW-3/CX hypothetical protein NP_220395.1 1038518 D 272561 CDS NP_220396.1 15605610 884675 complement(1039010..1041646) 1 NC_000117.1 polymorphic outer membrane protein 1041646 pmpI 884675 pmpI Chlamydia trachomatis D/UW-3/CX polymorphic outer membrane protein NP_220396.1 1039010 R 272561 CDS