; retrieve-seq -v -org Chlamydia_trachomatis_E_11023_uid161369 -all -type downstream -feattype CDS -from 0 -to -2 -format wc -nocomment -label id,ctg,reg_left,reg_right,orf_strand -o /software/CC/bio/opt/rsat/rsa-tools//public_html/data/genomes/Chlamydia_trachomatis_E_11023_uid161369/genome/Chlamydia_trachomatis_E_11023_uid161369_stop_codons.wc
; organism      	Chlamydia_trachomatis_E_11023_uid161369
; sequence type 	downstream
; feature type  	cds
; Output format 	wc
; Line width    	60
; relative coordinates
;        from    -2
;        to      0
;        size    3
; Queries       	926
;
YP_005809199.1|NC_017431.1|1174|1176|D	\TAA\
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YP_005809201.1|NC_017431.1|2094|2096|D	\TAG\
YP_005809202.1|NC_017431.1|3581|3583|D	\TAA\
YP_005809203.1|NC_017431.1|5049|5051|D	\TAA\
YP_005809204.1|NC_017431.1|5148|5150|R	\TAA\
YP_005809205.1|NC_017431.1|6367|6369|R	\TAA\
YP_005809206.1|NC_017431.1|7217|7219|D	\TAG\
YP_005809207.1|NC_017431.1|8198|8200|D	\TAA\
YP_005809208.1|NC_017431.1|8216|8218|R	\TAG\
YP_005809209.1|NC_017431.1|9803|9805|D	\TAG\
YP_005809210.1|NC_017431.1|9792|9794|R	\TGA\
YP_005809211.1|NC_017431.1|11291|11293|R	\TGA\
YP_005809212.1|NC_017431.1|12544|12546|R	\TGA\
YP_005809213.1|NC_017431.1|14951|14953|D	\TGA\
YP_005809214.1|NC_017431.1|16024|16026|D	\TAA\
YP_005809215.1|NC_017431.1|16124|16126|R	\TAA\
YP_005809216.1|NC_017431.1|18363|18365|D	\TAA\
YP_005809217.1|NC_017431.1|19850|19852|D	\TAA\
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YP_005809220.1|NC_017431.1|24602|24604|R	\TAA\
YP_005809221.1|NC_017431.1|26674|26676|R	\TAG\
YP_005809222.1|NC_017431.1|27817|27819|D	\TAG\
YP_005809223.1|NC_017431.1|29084|29086|D	\TAG\
YP_005809224.1|NC_017431.1|29940|29942|D	\TGA\
YP_005809225.1|NC_017431.1|31283|31285|D	\TAA\
YP_005809226.1|NC_017431.1|31624|31626|D	\TAG\
YP_005809227.1|NC_017431.1|32698|32700|D	\TAG\
YP_005809228.1|NC_017431.1|33089|33091|D	\TAG\
YP_005809229.1|NC_017431.1|33806|33808|D	\TAA\
YP_005809230.1|NC_017431.1|34414|34416|D	\TAG\
YP_005809231.1|NC_017431.1|34709|34711|D	\TAG\
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YP_005809233.1|NC_017431.1|36503|36505|R	\TAA\
YP_005809234.1|NC_017431.1|38991|38993|R	\TAA\
YP_005809235.1|NC_017431.1|41126|41128|D	\TAA\
YP_005809236.1|NC_017431.1|41093|41095|R	\TAG\
YP_005809237.1|NC_017431.1|42564|42566|D	\TGA\
YP_005809238.1|NC_017431.1|42865|42867|R	\TAA\
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YP_005809240.1|NC_017431.1|44041|44043|D	\TGA\
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YP_005809242.1|NC_017431.1|45901|45903|D	\TAG\
YP_005809243.1|NC_017431.1|45966|45968|R	\TAA\
YP_005809244.1|NC_017431.1|48084|48086|R	\TAA\
YP_005809245.1|NC_017431.1|49530|49532|D	\TAG\
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YP_005809263.1|NC_017431.1|72043|72045|D	\TAG\
YP_005809264.1|NC_017431.1|73321|73323|D	\TAG\
YP_005809265.1|NC_017431.1|74773|74775|D	\TAA\
YP_005809266.1|NC_017431.1|74836|74838|R	\TAG\
YP_005809267.1|NC_017431.1|76830|76832|R	\TAA\
YP_005809268.1|NC_017431.1|78718|78720|D	\TGA\
YP_005809269.1|NC_017431.1|78766|78768|R	\TAA\
YP_005809270.1|NC_017431.1|80880|80882|D	\TAG\
YP_005809271.1|NC_017431.1|81652|81654|D	\TAG\
YP_005809272.1|NC_017431.1|83008|83010|D	\TAG\
YP_005809273.1|NC_017431.1|83954|83956|D	\TAA\
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YP_005809283.1|NC_017431.1|94080|94082|D	\TAG\
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YP_005809287.1|NC_017431.1|97870|97872|R	\TAA\
YP_005809288.1|NC_017431.1|99735|99737|R	\TAG\
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YP_005809290.1|NC_017431.1|101740|101742|R	\TAA\
YP_005809291.1|NC_017431.1|102218|102220|R	\TAA\
YP_005809292.1|NC_017431.1|103501|103503|R	\TAA\
YP_005809293.1|NC_017431.1|105627|105629|R	\TAA\
YP_005809294.1|NC_017431.1|108064|108066|D	\TAA\
YP_005809295.1|NC_017431.1|108075|108077|R	\TGA\
YP_005809296.1|NC_017431.1|108937|108939|R	\TAA\
YP_005809297.1|NC_017431.1|109700|109702|R	\TAA\
YP_005809298.1|NC_017431.1|110078|110080|R	\TAG\
YP_005809299.1|NC_017431.1|112725|112727|R	\TAA\
YP_005809300.1|NC_017431.1|114147|114149|R	\TAG\
YP_005809301.1|NC_017431.1|117154|117156|D	\TGA\
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YP_005809303.1|NC_017431.1|117522|117524|R	\TGA\
YP_005809304.1|NC_017431.1|118577|118579|D	\TAA\
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YP_005809306.1|NC_017431.1|119500|119502|R	\TAA\
YP_005809307.1|NC_017431.1|122602|122604|D	\TAG\
YP_005809308.1|NC_017431.1|122717|122719|R	\TGA\
YP_005809309.1|NC_017431.1|124782|124784|D	\TAA\
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YP_005809311.1|NC_017431.1|125602|125604|R	\TAG\
YP_005809312.1|NC_017431.1|126520|126522|R	\TAA\
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YP_005809314.1|NC_017431.1|128673|128675|R	\TAA\
YP_005809315.1|NC_017431.1|130510|130512|R	\TAA\
YP_005809316.1|NC_017431.1|133403|133405|D	\TAG\
YP_005809317.1|NC_017431.1|134889|134891|D	\TAA\
YP_005809318.1|NC_017431.1|135544|135546|D	\TAA\
YP_005809319.1|NC_017431.1|136025|136027|D	\TAA\
YP_005809320.1|NC_017431.1|136344|136346|D	\TAG\
YP_005809321.1|NC_017431.1|136934|136936|D	\TAA\
YP_005809322.1|NC_017431.1|137103|137105|R	\TAG\
YP_005809323.1|NC_017431.1|138002|138004|R	\TAA\
YP_005809324.1|NC_017431.1|139027|139029|D	\TAG\
YP_005809325.1|NC_017431.1|139571|139573|D	\TAA\
YP_005809326.1|NC_017431.1|140078|140080|D	\TAG\
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YP_005809328.1|NC_017431.1|141498|141500|R	\TAG\
YP_005809329.1|NC_017431.1|142130|142132|D	\TAA\
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YP_005809337.1|NC_017431.1|150598|150600|R	\TGA\
YP_005809338.1|NC_017431.1|152267|152269|D	\TAA\
YP_005809339.1|NC_017431.1|153408|153410|D	\TAA\
YP_005809340.1|NC_017431.1|154217|154219|D	\TAA\
YP_005809341.1|NC_017431.1|155081|155083|D	\TGA\
YP_005809342.1|NC_017431.1|156006|156008|D	\TAG\
YP_005809343.1|NC_017431.1|156005|156007|R	\TAG\
YP_005809344.1|NC_017431.1|158145|158147|D	\TAA\
YP_005809345.1|NC_017431.1|158775|158777|D	\TAA\
YP_005809346.1|NC_017431.1|160031|160033|D	\TAA\
YP_005809347.1|NC_017431.1|160875|160877|D	\TAA\
YP_005809348.1|NC_017431.1|161732|161734|D	\TAA\
YP_005809349.1|NC_017431.1|163762|163764|D	\TAA\
YP_005809350.1|NC_017431.1|165764|165766|D	\TGA\
YP_005809351.1|NC_017431.1|170211|170213|D	\TAA\
YP_005809352.1|NC_017431.1|170277|170279|R	\TAA\
YP_005809353.1|NC_017431.1|172000|172002|R	\TAA\
YP_005809354.1|NC_017431.1|173504|173506|D	\TAG\
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YP_005809357.1|NC_017431.1|175886|175888|R	\TGA\
YP_005809358.1|NC_017431.1|178505|178507|R	\TAG\
YP_005809359.1|NC_017431.1|179631|179633|R	\TGA\
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YP_005809362.1|NC_017431.1|183264|183266|D	\TGA\
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YP_005809370.1|NC_017431.1|192356|192358|D	\TAA\
YP_005809371.1|NC_017431.1|192696|192698|D	\TGA\
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YP_005809373.1|NC_017431.1|194223|194225|D	\TAA\
YP_005809374.1|NC_017431.1|194977|194979|D	\TAA\
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YP_005809376.1|NC_017431.1|196069|196071|R	\TAG\
YP_005809377.1|NC_017431.1|196359|196361|R	\TGA\
YP_005809378.1|NC_017431.1|198885|198887|D	\TAG\
YP_005809379.1|NC_017431.1|198914|198916|R	\TAA\
YP_005809380.1|NC_017431.1|199318|199320|R	\TGA\
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YP_005809385.1|NC_017431.1|204894|204896|D	\TGA\
YP_005809386.1|NC_017431.1|206489|206491|D	\TAA\
YP_005809387.1|NC_017431.1|206922|206924|D	\TAG\
YP_005809388.1|NC_017431.1|208562|208564|D	\TAA\
YP_005809389.1|NC_017431.1|209357|209359|D	\TAA\
YP_005809390.1|NC_017431.1|209356|209358|R	\TAG\
YP_005809391.1|NC_017431.1|210242|210244|R	\TAG\
YP_005809392.1|NC_017431.1|210855|210857|R	\TAG\
YP_005809393.1|NC_017431.1|213380|213382|R	\TAG\
YP_005809394.1|NC_017431.1|215797|215799|R	\TAG\
YP_005809395.1|NC_017431.1|216281|216283|R	\TAA\
YP_005809396.1|NC_017431.1|217057|217059|R	\TAA\
YP_005809397.1|NC_017431.1|218302|218304|R	\TAG\
YP_005809398.1|NC_017431.1|220153|220155|R	\TAG\
YP_005809399.1|NC_017431.1|221786|221788|D	\TAA\
YP_005809400.1|NC_017431.1|222878|222880|D	\TAG\
YP_005809401.1|NC_017431.1|224398|224400|D	\TAA\
YP_005809402.1|NC_017431.1|225498|225500|D	\TAA\
YP_005809403.1|NC_017431.1|226375|226377|D	\TGA\
YP_005809404.1|NC_017431.1|227201|227203|D	\TAA\
YP_005809405.1|NC_017431.1|227959|227961|D	\TGA\
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YP_005809407.1|NC_017431.1|230466|230468|D	\TAA\
YP_005809408.1|NC_017431.1|232147|232149|D	\TAA\
YP_005809409.1|NC_017431.1|233004|233006|D	\TAA\
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YP_005809411.1|NC_017431.1|234880|234882|R	\TAA\
YP_005809412.1|NC_017431.1|236172|236174|R	\TGA\
YP_005809413.1|NC_017431.1|240094|240096|D	\TAG\
YP_005809414.1|NC_017431.1|240088|240090|R	\TAA\
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YP_005809418.1|NC_017431.1|244927|244929|D	\TAA\
YP_005809419.1|NC_017431.1|246341|246343|D	\TAA\
YP_005809420.1|NC_017431.1|247199|247201|D	\TAG\
YP_005809421.1|NC_017431.1|248181|248183|D	\TAG\
YP_005809422.1|NC_017431.1|249201|249203|D	\TGA\
YP_005809423.1|NC_017431.1|249776|249778|D	\TAA\
YP_005809424.1|NC_017431.1|249775|249777|R	\TAG\
YP_005809425.1|NC_017431.1|250960|250962|R	\TAA\
YP_005809426.1|NC_017431.1|251127|251129|R	\TGA\
YP_005809427.1|NC_017431.1|251658|251660|R	\TAG\
YP_005809428.1|NC_017431.1|252861|252863|R	\TAG\
YP_005809429.1|NC_017431.1|253395|253397|R	\TAA\
YP_005809430.1|NC_017431.1|253862|253864|R	\TAA\
YP_005809431.1|NC_017431.1|254508|254510|R	\TGA\
YP_005809432.1|NC_017431.1|255180|255182|R	\TAG\
YP_005809433.1|NC_017431.1|255920|255922|R	\TAA\
YP_005809434.1|NC_017431.1|258038|258040|D	\TAG\
YP_005809435.1|NC_017431.1|259694|259696|D	\TAG\
YP_005809436.1|NC_017431.1|260146|260148|D	\TAG\
YP_005809437.1|NC_017431.1|260759|260761|D	\TAA\
YP_005809438.1|NC_017431.1|263600|263602|D	\TAG\
YP_005809439.1|NC_017431.1|264042|264044|D	\TAA\
YP_005809440.1|NC_017431.1|264105|264107|R	\TAA\
YP_005809441.1|NC_017431.1|264707|264709|R	\TAA\
YP_005809442.1|NC_017431.1|265450|265452|R	\TGA\
YP_005809443.1|NC_017431.1|266393|266395|R	\TAA\
YP_005809444.1|NC_017431.1|268114|268116|D	\TAA\
YP_005809445.1|NC_017431.1|268307|268309|D	\TAG\
YP_005809446.1|NC_017431.1|270867|270869|D	\TAG\
YP_005809447.1|NC_017431.1|271457|271459|D	\TAA\
YP_005809448.1|NC_017431.1|272549|272551|D	\TAA\
YP_005809449.1|NC_017431.1|272548|272550|R	\TAA\
YP_005809450.1|NC_017431.1|274986|274988|D	\TAA\
YP_005809451.1|NC_017431.1|275965|275967|D	\TAA\
YP_005809452.1|NC_017431.1|277259|277261|D	\TAA\
YP_005809453.1|NC_017431.1|277288|277290|R	\TAG\
YP_005809454.1|NC_017431.1|280236|280238|D	\TAG\
YP_005809455.1|NC_017431.1|280292|280294|R	\TAG\
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YP_005809457.1|NC_017431.1|284412|284414|R	\TGA\
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YP_005809580.1|NC_017431.1|421484|421486|D	\TGA\
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YP_005809583.1|NC_017431.1|424846|424848|D	\TAA\
YP_005809584.1|NC_017431.1|426315|426317|D	\TAA\
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YP_005809602.1|NC_017431.1|447220|447222|D	\TAA\
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YP_005809607.1|NC_017431.1|454129|454131|D	\TAA\
YP_005809608.1|NC_017431.1|456506|456508|D	\TAG\
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YP_005809619.1|NC_017431.1|466863|466865|D	\TAA\
YP_005809620.1|NC_017431.1|468326|468328|D	\TAA\
YP_005809621.1|NC_017431.1|469819|469821|D	\TGA\
YP_005809622.1|NC_017431.1|471703|471705|D	\TAA\
YP_005809623.1|NC_017431.1|474737|474739|D	\TAA\
YP_005809624.1|NC_017431.1|480134|480136|D	\TAA\
YP_005809625.1|NC_017431.1|485665|485667|D	\TAA\
YP_005809626.1|NC_017431.1|487048|487050|D	\TGA\
YP_005809627.1|NC_017431.1|487755|487757|D	\TGA\
YP_005809628.1|NC_017431.1|488627|488629|D	\TGA\
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YP_005809631.1|NC_017431.1|489924|489926|R	\TAA\
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YP_005809634.1|NC_017431.1|492019|492021|D	\TAA\
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YP_005809636.1|NC_017431.1|493759|493761|D	\TAA\
YP_005809637.1|NC_017431.1|494298|494300|D	\TAA\
YP_005809638.1|NC_017431.1|496341|496343|D	\TAA\
YP_005809639.1|NC_017431.1|497647|497649|D	\TAA\
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YP_005809669.1|NC_017431.1|526929|526931|D	\TGA\
YP_005809670.1|NC_017431.1|527576|527578|D	\TGA\
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YP_005809672.1|NC_017431.1|529929|529931|D	\TAA\
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YP_005809675.1|NC_017431.1|534439|534441|R	\TAG\
YP_005809676.1|NC_017431.1|535339|535341|R	\TAG\
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YP_005809679.1|NC_017431.1|538571|538573|D	\TAG\
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YP_005809681.1|NC_017431.1|540032|540034|D	\TAA\
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YP_005809686.1|NC_017431.1|544253|544255|D	\TAA\
YP_005809687.1|NC_017431.1|545015|545017|D	\TAA\
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YP_005809694.1|NC_017431.1|552186|552188|D	\TAA\
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YP_005809696.1|NC_017431.1|552716|552718|R	\TAA\
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YP_005809698.1|NC_017431.1|555914|555916|R	\TAA\
YP_005809699.1|NC_017431.1|558255|558257|R	\TAG\
YP_005809700.1|NC_017431.1|558612|558614|R	\TAG\
YP_005809701.1|NC_017431.1|559328|559330|R	\TAG\
YP_005809702.1|NC_017431.1|559505|559507|R	\TGA\
YP_005809703.1|NC_017431.1|560515|560517|D	\TAG\
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YP_005809706.1|NC_017431.1|562125|562127|R	\TAG\
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YP_005809708.1|NC_017431.1|563922|563924|R	\TAA\
YP_005809709.1|NC_017431.1|564491|564493|R	\TGA\
YP_005809710.1|NC_017431.1|565314|565316|R	\TAG\
YP_005809711.1|NC_017431.1|567080|567082|D	\TAA\
YP_005809712.1|NC_017431.1|567092|567094|R	\TAA\
YP_005809713.1|NC_017431.1|568483|568485|R	\TGA\
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; Host name	nic47
; Job started	2012-05-05.012613
; Job done	2012-05-05.012613
; Seconds	0.25
;	user	0.25
;	system	0.04
;	cuser	0
;	csystem	0