-- dump date 20120504_141512 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_219433.1 62184648 3337993 148..1143 1 NC_004552.2 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1143 hemB 3337993 hemB Chlamydophila abortus S26/3 delta-aminolevulinic acid dehydratase YP_219433.1 148 D 218497 CDS YP_219434.1 62184649 3337554 complement(1159..2577) 1 NC_004552.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 2577 3337554 CAB002 Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit A YP_219434.1 1159 R 218497 CDS YP_219435.1 62184650 3337555 complement(2600..3034) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0003 SWALL:Y003_CHLMU (SWALL:Q9PLU2) (143 aa) fasta scores: E(): 6.7e-35, 74.15% id in 147 aa. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein 3034 3337555 CAB003 Chlamydophila abortus S26/3 hypothetical protein YP_219435.1 2600 R 218497 CDS YP_219436.1 62184651 3337556 3147..5300 1 NC_004552.2 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 5300 3337556 CAB004 Chlamydophila abortus S26/3 transcript cleavage factor/unknown domain fusion protein YP_219436.1 3147 D 218497 CDS YP_219437.1 62184652 3337557 5450..6643 1 NC_004552.2 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 6643 3337557 CAB005 Chlamydophila abortus S26/3 aromatic amino acid aminotransferase YP_219437.1 5450 D 218497 CDS YP_219438.1 62184653 3337558 6841..7944 1 NC_004552.2 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 7944 3337558 CAB006 Chlamydophila abortus S26/3 rod shape-determining protein MreC YP_219438.1 6841 D 218497 CDS YP_219439.1 62184654 3337559 complement(7904..11041) 1 NC_004552.2 Similar to Chlamydia pneumoniae exodeoxyribonuclease V beta chain cpn0738 or cp0007 SWALL:EX5B_CHLPN (SWALL:Q9Z7G7) (1050 aa) fasta scores: E(): 0, 59.18% id in 1056 aa, and to Salmonella typhimurium exonuclease V, beta chain STM2994 SWALL:Q8ZMB6 (EMBL:AE008837) (1181 aa) fasta scores: E(): 7.4e-25, 24.65% id in 1160 aa; UvrD/REP helicase 11041 3337559 CAB007 Chlamydophila abortus S26/3 UvrD/REP helicase YP_219439.1 7904 R 218497 CDS YP_219440.1 62184655 3337560 complement(11028..14096) 1 NC_004552.2 Similar to many proposed exodeoxyribonuclease V proteins including: Chlamydia pneumoniae exodeoxyribonuclease V, gamma subunit cpn0737 SWALL:Q9Z7G8 (EMBL:AE001655) (1024 aa) fasta scores: E(): 4.1e-215, 52.87% id in 1027 aa; hypothetical protein 14096 3337560 CAB008 Chlamydophila abortus S26/3 hypothetical protein YP_219440.1 11028 R 218497 CDS YP_219441.1 62184656 3337561 14095..15807 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cp0009 SWALL:Q9K2F0 (EMBL:AE002164) (569 aa) fasta scores: E(): 2.3e-147, 67.42% id in 571 aa and to Chlamydia pneumoniae efflux protein YgeD or cpn0736 SWALL:Q9Z7G9 (EMBL:AE001655) (565 aa) fasta scores: E(): 7.3e-146, 67.19% id in 567 aa, and to Chlamydia trachomatis efflux protein YgeD or ct641 SWALL:O84647 (EMBL:AE001334) (559 aa) fasta scores: E(): 4.4e-130, 60.46% id in 564 aa; hypothetical protein 15807 3337561 CAB009 Chlamydophila abortus S26/3 hypothetical protein YP_219441.1 14095 D 218497 CDS YP_219442.1 62184657 3337562 complement(15832..16812) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct627 ct627 SWALL:Y627_CHLTR (SWALL:O84632) (327 aa) fasta scores: E(): 3.1e-105, 80% id in 325 aa, and to Chlamydia muridarum hypothetical protein Tc0916 tc0916 SWALL:Y916_CHLMU (SWALL:Q9PJB6) (328 aa) fasta scores: E(): 7.7e-103, 77.84% id in 325 aa, and to Chlamydia pneumoniae hypothetical protein cpn0734 or cp0012 or cpj0734 SWALL:Y734_CHLPN (SWALL:Q9Z7H1) (324 aa) fasta scores: E(): 5.8e-106, 78.15% id in 325 aa.; hypothetical protein 16812 3337562 CAB010 Chlamydophila abortus S26/3 hypothetical protein YP_219442.1 15832 R 218497 CDS YP_219443.1 62184658 3337563 17032..17661 1 NC_004552.2 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 17661 rpsD 3337563 rpsD Chlamydophila abortus S26/3 30S ribosomal protein S4 YP_219443.1 17032 D 218497 CDS YP_219444.1 62184659 3337564 complement(17729..18598) 1 NC_004552.2 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 18598 3337564 CAB012 Chlamydophila abortus S26/3 endonuclease IV YP_219444.1 17729 R 218497 CDS YP_219445.1 62184660 3337565 18664..20307 1 NC_004552.2 Similar to Chlamydia muridarum virulence factor MviN homologue or tc0913 SWALL:MVIN_CHLMU (SWALL:Q9PJB9) (536 aa) fasta scores: E(): 1.6e-153, 72.6% id in 533 aa. The Chlamydia trachomatis orthologue of this gene is expressed during natural infection.; hypothetical protein 20307 3337565 CAB013 Chlamydophila abortus S26/3 hypothetical protein YP_219445.1 18664 D 218497 CDS YP_219446.1 62184661 3337906 20414..21700 1 NC_004552.2 Similar to Chlamydia trachomatis lorf2 SWALL:Q46379 (EMBL:U50732) (182 aa) fasta scores: E(): 4.8e-33, 56.72% id in 171 aa. In C. trachomatis lorf2 is expressed during natural infection.In C. pneumoniae the protein encoded by the homologue of this gene is a species specific epitope.; hypothetical protein 21700 3337906 CAB014 Chlamydophila abortus S26/3 hypothetical protein YP_219446.1 20414 D 218497 CDS YP_219447.1 62184662 3337907 21806..23725 1 NC_004552.2 Similar to Chlamydia pneumoniae Chlpn 76 kDa homolog_1 cpn0728 or cpj0728 or cp0018 SWALL:Q9Z7H7 (EMBL:AE001654) (651 aa) fasta scores: E(): 1.3e-66, 43.43% id in 663 aa, and to Chlamydia pneumoniae 76 kDa protein SWALL:Q46166 (EMBL:L23921) (715 aa) fasta scores: E(): 2.5e-28, 36.44% id in 461 aa. Similar to CAB014. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 23725 3337907 CAB015 Chlamydophila abortus S26/3 hypothetical protein YP_219447.1 21806 D 218497 CDS YP_219448.1 62184663 3337908 complement(23916..26516) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0727 or cp0019 SWALL:Q9Z7H8 (EMBL:AE001654) (872 aa) fasta scores: E(): 5.7e-136, 47.36% id in 874 aa, and to Chlamydia muridarum hypothetical protein Tc0909 SWALL:Q9PJC2 (EMBL:AE002357) (875 aa) fasta scores: E(): 1.2e-116, 41.88% id in 881 aa, and to Chlamydia trachomatis hypothetical protein Ct619 SWALL:O84624 (EMBL:AE001332) (877 aa) fasta scores: E(): 1.3e-103, 42.45% id in 881 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 26516 3337908 CAB016 Chlamydophila abortus S26/3 hypothetical protein YP_219448.1 23916 R 218497 CDS YP_219449.1 62184664 3337909 26660..29317 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cp0020 SWALL:Q9K2E9 (EMBL:AE002166) (812 aa) fasta scores: E(): 2e-138, 53.9% id in 846 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 29317 3337909 CAB017 Chlamydophila abortus S26/3 hypothetical protein YP_219449.1 26660 D 218497 CDS YP_219450.1 62184665 3337910 29348..29578 1 NC_004552.2 Similar to Chlamydia pneumoniae ct652.1 hypothetical protein cpn0725 or cpj0725 or cp0021 SWALL:Q9Z7I0 (EMBL:AE001653) (75 aa) fasta scores: E(): 1.3e-14, 66.66% id in 78 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 29578 3337910 CAB018 Chlamydophila abortus S26/3 hypothetical protein YP_219450.1 29348 D 218497 CDS YP_219451.1 62184666 3337911 complement(29575..30297) 1 NC_004552.2 Similar to Chlamydia pneumoniae ABC transporter ATPase cpn0723 or cp0023 SWALL:Q9Z7I2 (EMBL:AE001653) (240 aa) fasta scores: E(): 3.4e-78, 92.08% id in 240 aa.; ABC transporter ATP-binding protein 30297 3337911 CAB019 Chlamydophila abortus S26/3 ABC transporter ATP-binding protein YP_219451.1 29575 R 218497 CDS YP_219452.1 62184667 3337654 complement(30305..30790) 1 NC_004552.2 Similar to Chlamydia psittaci protein of unknown function Dsk1 SWALL:Q46226 (EMBL:Z50747) (161 aa) fasta scores: E(): 5.2e-66, 96.89% id in 161 aa.; lipoprotein 30790 dsk1 3337654 dsk1 Chlamydophila abortus S26/3 lipoprotein YP_219452.1 30305 R 218497 CDS YP_219453.1 62184668 3337436 complement(30787..31596) 1 NC_004552.2 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 31596 kdsA 3337436 kdsA Chlamydophila abortus S26/3 2-dehydro-3-deoxyphosphooctonate aldolase YP_219453.1 30787 R 218497 CDS YP_219454.1 62184669 3337912 complement(32041..32277) 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0720 or cp0026 or cpj0720 SWALL:Y720_CHLPN (SWALL:Q9Z7I5) (78 aa) fasta scores: E(): 1.5e-25, 92.3% id in 78 aa; hypothetical protein 32277 3337912 CAB022 Chlamydophila abortus S26/3 hypothetical protein YP_219454.1 32041 R 218497 CDS YP_219455.1 62184670 3338090 complement(32396..33373) 1 NC_004552.2 Similar to Chlamydia pneumoniae predicted pseudouridine synthase SfhB or cpn0719 or cp0027 SWALL:Q9Z7I6 (EMBL:AE001653) (325 aa) fasta scores: E(): 5.4e-88, 70.66% id in 317 aa, and to Escherichia coli ribosomal large subunit pseudouridine synthase d RluD or SfhB SWALL:RLUD_ECOLI (SWALL:P33643) (326 aa) fasta scores: E(): 2.5e-32, 38.59% id in 298 aa; pseudouridine synthase 33373 rluD 3338090 rluD Chlamydophila abortus S26/3 pseudouridine synthase YP_219455.1 32396 R 218497 CDS YP_219456.1 62184671 3337913 complement(33572..33880) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct657 hypothetical protein cpn0718 or cpj0718 or cp0028 SWALL:Q9Z7I7 (EMBL:AE001653) (106 aa) fasta scores: E(): 1.6e-15, 51.54% id in 97 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 33880 3337913 CAB024 Chlamydophila abortus S26/3 hypothetical protein YP_219456.1 33572 R 218497 CDS YP_219457.1 62184672 3337914 complement(33882..34175) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct656 hypothetical protein cpn0717 or cpj0717 or cp0029 SWALL:Q9Z7I8 (EMBL:AE001653) (99 aa) fasta scores: E(): 6.5e-21, 65.3% id in 98 aa, and to Chlamydia trachomatis hypothetical protein Ct656 ct656 SWALL:O84663 (EMBL:AE001336) (97 aa) fasta scores: E(): 7.3e-20, 59.79% id in 97 aa, and to Chlamydia muridarum hypothetical protein Tc0027 tc0027 SWALL:Q9PLR8 (EMBL:AE002271) (95 aa) fasta scores: E(): 1.8e-12, 64.61% id in 65 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 34175 3337914 CAB025 Chlamydophila abortus S26/3 hypothetical protein YP_219457.1 33882 R 218497 CDS YP_219458.1 62184673 3337915 complement(34288..35727) 1 NC_004552.2 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 35727 3337915 CAB026 Chlamydophila abortus S26/3 DNA topoisomerase IV subunit A YP_219458.1 34288 R 218497 CDS YP_219459.1 62184674 3337992 complement(35731..37539) 1 NC_004552.2 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 37539 gyrB_2 3337992 gyrB_2 Chlamydophila abortus S26/3 DNA topoisomerase IV subunit B YP_219459.1 35731 R 218497 CDS YP_219460.1 62184675 3337916 38121..39137 1 NC_004552.2 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 39137 hemA 3337916 hemA Chlamydophila abortus S26/3 glutamyl-tRNA reductase YP_219460.1 38121 D 218497 CDS YP_219461.1 62184676 3337917 39246..39389 1 NC_004552.2 No significant database matches.; hypothetical protein 39389 3337917 CAB029 Chlamydophila abortus S26/3 hypothetical protein YP_219461.1 39246 D 218497 CDS YP_219462.1 62184677 3337918 39486..39887 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0713 or cp0033 or cpj0713 SWALL:Y713_CHLPN (SWALL:Q9Z7J2) (130 aa) fasta scores: E(): 3.7e-37, 75.78% id in 128 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 39887 3337918 CAB030 Chlamydophila abortus S26/3 hypothetical protein YP_219462.1 39486 D 218497 CDS YP_219463.1 62184678 3337919 39907..42288 1 NC_004552.2 Similar to Chlamydia pneumoniae fha domain cpn0712 or cpj0712 or cp0034 SWALL:Q9Z7J3 (EMBL:AE001652) (845 aa) fasta scores: E(): 5.3e-126, 62.85% id in 848 aa.; hypothetical protein 42288 3337919 CAB031 Chlamydophila abortus S26/3 hypothetical protein YP_219463.1 39907 D 218497 CDS YP_219464.1 62184679 3337920 42314..42595 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct665 SWALL:Y665_CHLTR (SWALL:O84672) (83 aa) fasta scores: E(): 2.4e-17, 70.37% id in 81 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 42595 3337920 CAB032 Chlamydophila abortus S26/3 hypothetical protein YP_219464.1 42314 D 218497 CDS YP_219465.1 62184680 3337921 42611..42865 1 NC_004552.2 Similar to Chlamydia trachomatis protein Ct666 SWALL:Y666_CHLTR (SWALL:O84673) (83 aa) fasta scores: E(): 1e-28, 94.04% id in 84 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 42865 3337921 CAB033 Chlamydophila abortus S26/3 hypothetical protein YP_219465.1 42611 D 218497 CDS YP_219466.1 62184681 3337922 42884..43333 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0709 or cpj0709 or cp0037 SWALL:Q9Z7J6 (EMBL:AE001652) (149 aa) fasta scores: E(): 6.5e-47, 79.05% id in 148 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 43333 3337922 CAB034 Chlamydophila abortus S26/3 hypothetical protein YP_219466.1 42884 D 218497 CDS YP_219467.1 62184682 3337923 43378..44046 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct668 SWALL:O84675 (EMBL:AE001337) (223 aa) fasta scores: E(): 6.8e-47, 66.81% id in 223 aa, and to Chlamydia pneumoniae hypothetical protein cpn0708 or cpj0708 or cp0038 SWALL:Q9Z7J7 (EMBL:AE001652) (224 aa) fasta scores: E(): 3.6e-46, 67.55% id in 225 aa, and to Chlamydia muridarum hypothetical protein Tc0039 SWALL:Q9PLQ6 (EMBL:AE002271) (226 aa) fasta scores: E(): 6.9e-44, 63.22% id in 223 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 44046 3337923 CAB035 Chlamydophila abortus S26/3 hypothetical protein YP_219467.1 43378 D 218497 CDS YP_219468.1 62184683 3337924 44048..45376 1 NC_004552.2 Similar to Chlamydia pneumoniae YopN or YscN or cpn0707 or cp0039 SWALL:Q9Z7J8 (EMBL:AE001652) (442 aa) fasta scores: E(): 5.8e-152, 95.24% id in 442 aa, and to Yersinia enterocolitica probable ATP synthase YscN SWALL:YSCN_YEREN (SWALL:P40290) (439 aa) fasta scores: E(): 8.4e-81, 55.45% id in 422 aa and to Bacillus subtilis flagellum-specific ATP synthase FliI SWALL:FLII_BACSU (SWALL:P23445) (440 aa) fasta scores: E(): 1.5e-75, 52.39% id in 418 aa.; type III secretion system ATPase 45376 3337924 CAB036 Chlamydophila abortus S26/3 type III secretion system ATPase YP_219468.1 44048 D 218497 CDS YP_219469.1 62184684 3337925 45397..45915 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0706 or cpj0706 or cp0040 SWALL:Q9Z7J9 (EMBL:AE001652) (168 aa) fasta scores: E(): 1.2e-37, 88.69% id in 168 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins. CDS contains coiled coil region from residues 22-151.; hypothetical protein 45915 3337925 CAB037 Chlamydophila abortus S26/3 hypothetical protein YP_219469.1 45397 D 218497 CDS YP_219470.1 62184685 3337926 45906..46751 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0705 or cp0041 or cpj0705 SWALL:Y705_CHLPN (SWALL:Q9Z7K0) (280 aa) fasta scores: E(): 7.2e-51, 57.84% id in 287 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 46751 3337926 CAB038 Chlamydophila abortus S26/3 hypothetical protein YP_219470.1 45906 D 218497 CDS YP_219471.1 62184686 3337927 46764..47879 1 NC_004552.2 Similar to Chlamydia pneumoniae flagellar motor switch domain/YscQ family FliN or cpn0704 or cp0042 SWALL:Q9Z7K1 (EMBL:AE001652) (371 aa) fasta scores: E(): 2.7e-93, 63.53% id in 373 aa, and to Chlamydia muridarum type III secretion translocase SctQ tc0043 SWALL:Q9PLQ2 (EMBL:AE002271) (373 aa) fasta scores: E(): 1.2e-87, 57.75% id in 374 aa.; type III secretion system protein 47879 3337927 CAB039 Chlamydophila abortus S26/3 type III secretion system protein YP_219471.1 46764 D 218497 CDS YP_219472.1 62184687 3337928 47897..49405 1 NC_004552.2 Similar to Chlamydia pneumoniae serine/threonine-protein kinase cpn0703 or cpj0703 or cp0043 SWALL:Q9Z7K2 (EMBL:AE001652) (502 aa) fasta scores: E(): 3.1e-110, 56.17% id in 502 aa.; serine/threonine-protein kinase 49405 3337928 CAB040 Chlamydophila abortus S26/3 serine/threonine-protein kinase YP_219472.1 47897 D 218497 CDS YP_219473.1 62184688 3337929 49402..52128 1 NC_004552.2 Similar to many OutD, general secretion protein, orthologues that are thought to be involved in the recognition of secreted proteins: Chlamydia trachomatis general secretion protein D or ct674 SWALL:O84681 (EMBL:AE001337) (921 aa) fasta scores: E(): 0, 73.52% id in 933 aa. Also similar to several Type III secretion system proteins.; general secretion protein 52128 3337929 CAB041 Chlamydophila abortus S26/3 general secretion protein YP_219473.1 49402 D 218497 CDS YP_219474.1 62184689 3337930 complement(52771..53847) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical ATP:guanido phosphotransferase cpn0701 or cp0045 or cpj0701 SWALL:Y701_CHLPN (SWALL:Q9Z7K4) (358 aa) fasta scores: E(): 2.6e-98, 66.76% id in 358 aa, and to Chlamydia muridarum hypothetical ATP:guanido phosphotransferase Tc0046 SWALL:Y046_CHLMU (SWALL:Q9PLP9) (356 aa) fasta scores: E(): 3.5e-76, 54.39% id in 353 aa, and to Chlamydia trachomatis hypothetical ATP:guanido phosphotransferase Ct675 SWALL:Y675_CHLTR (SWALL:O84682) (356 aa) fasta scores: E(): 1.4e-73, 54.1% id in 353 aa; ATP:guanido phosphotransferase 53847 3337930 CAB042 Chlamydophila abortus S26/3 ATP:guanido phosphotransferase YP_219474.1 52771 R 218497 CDS YP_219475.1 62184690 3337931 complement(53831..54349) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0700 or cpj0700 or cp0046 SWALL:Q9Z7K5 (EMBL:AE001652) (171 aa) fasta scores: E(): 1.4e-44, 67.05% id in 170 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 54349 3337931 CAB043 Chlamydophila abortus S26/3 hypothetical protein YP_219475.1 53831 R 218497 CDS YP_219476.1 62184691 3337932 complement(54754..55296) 1 NC_004552.2 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 55296 frr 3337932 frr Chlamydophila abortus S26/3 ribosome recycling factor YP_219476.1 54754 R 218497 CDS YP_219477.1 62184692 3337933 complement(55280..56020) 1 NC_004552.2 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 56020 pyrH 3337933 pyrH Chlamydophila abortus S26/3 uridylate kinase YP_219477.1 55280 R 218497 CDS YP_219478.1 62184693 3337934 complement(56036..56884) 1 NC_004552.2 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 56884 tsf 3337934 tsf Chlamydophila abortus S26/3 elongation factor Ts YP_219478.1 56036 R 218497 CDS YP_219479.1 62184694 3338105 complement(56884..57714) 1 NC_004552.2 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 57714 rpsB 3338105 rpsB Chlamydophila abortus S26/3 30S ribosomal protein S2 YP_219479.1 56884 R 218497 CDS YP_219480.1 62184695 3337752 complement(58095..59264) 1 NC_004552.2 Chlamydophila abortus major outer membrane protein precursor OmpA SWALL:AAK00237 (EMBL:AF269256) (389 aa) fasta scores: E(): 1.2e-160, 100% id in 389 aa; major outer membrane protein precursor 59264 ompA 3337752 ompA Chlamydophila abortus S26/3 major outer membrane protein precursor YP_219480.1 58095 R 218497 CDS YP_219481.1 62184696 3337935 59869..63141 1 NC_004552.2 Similar to Chlamydia pneumoniae penicillin-binding protein, cp0052 SWALL:Q9K2E6 (EMBL:AE002167) (1090 aa) fasta scores: E(): 0, 67.76% id in 1089 aa, and to Chlamydia pneumoniae pbp2-transglycolase/transpeptidase pbp2 or cpn0694 SWALL:Q9Z7L0 (EMBL:AE001651) (1090 aa) fasta scores: E(): 0, 67.76% id in 1089 aa; penicillin-binding protein 63141 3337935 CAB049 Chlamydophila abortus S26/3 penicillin-binding protein YP_219481.1 59869 D 218497 CDS YP_219482.1 62184697 3337936 63209..64216 1 NC_004552.2 Similar to Chlamydia pneumoniae tpr repeats-ct683 hypothetical protein cpn0693 or cpj0693 or cp0053 SWALL:Q9Z7L1 (EMBL:AE001651) (339 aa) fasta scores: E(): 1.4e-115, 79.16% id in 336 aa, and to Chlamydia muridarum type III secretion chaperone, tc0055 SWALL:Q9PLP4 (EMBL:AE002273) (335 aa) fasta scores: E(): 1.3e-112, 77.67% id in 327 aa; hypothetical protein 64216 3337936 CAB050 Chlamydophila abortus S26/3 hypothetical protein YP_219482.1 63209 D 218497 CDS YP_219483.1 62184698 3337679 64552..66006 1 NC_004552.2 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 66006 3337679 CAB051 Chlamydophila abortus S26/3 cysteine desulfurase YP_219483.1 64552 D 218497 CDS YP_219484.1 62184699 3337680 66010..66777 1 NC_004552.2 Similar to Chlamydia pneumoniae ABC transporter ATPase AbcX or cpn0691 or cp0055 SWALL:Q9Z7L3 (EMBL:AE001651) (256 aa) fasta scores: E(): 2.6e-56, 67.45% id in 255 aa, and to Erwinia chrysanthemi SufC protein SWALL:Q9EXP4 (EMBL:AJ301654) (248 aa) fasta scores: E(): 1.7e-32, 45.71% id in 245 aa; ABC transporter ATP-binding protein 66777 3337680 CAB052 Chlamydophila abortus S26/3 ABC transporter ATP-binding protein YP_219484.1 66010 D 218497 CDS YP_219485.1 62184700 3337681 66792..68018 1 NC_004552.2 Similar to Chlamydia pneumoniae ABC transporter membrane protein cpn0690 or cpj0690 or cp0056 SWALL:Q9Z7L4 (EMBL:AE001651) (415 aa) fasta scores: E(): 4.2e-90, 55.97% id in 402 aa, and to Escherichia coli Sufd protein SWALL:SUFD_ECOLI (SWALL:P77689) (423 aa) fasta scores: E(): 1.9e-10, 26.68% id in 341 aa; ABC transport protein 68018 3337681 CAB053 Chlamydophila abortus S26/3 ABC transport protein YP_219485.1 66792 D 218497 CDS YP_219486.1 62184701 3337682 68050..69270 1 NC_004552.2 Similar to Chlamydia pneumoniae probable cysteine desulfurase Csd or cpn0689 or cp0057 SWALL:CSD_CHLPN (SWALL:Q9Z7L5) (406 aa) fasta scores: E(): 5.2e-107, 67.66% id in 402 aa, and to Escherichia coli selenocysteine lyase CsdB or SufS SWALL:CSDB_ECOLI (SWALL:P77444) (406 aa) fasta scores: E(): 2.1e-60, 42.14% id in 401 aa; cysteine desulfurase 69270 3337682 CAB054 Chlamydophila abortus S26/3 cysteine desulfurase YP_219486.1 68050 D 218497 CDS YP_219487.1 62184702 3337683 complement(69274..70062) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0688 or cpj0688 or cp0058 SWALL:Q9Z7L6 (EMBL:AE001651) (252 aa) fasta scores: E(): 9.3e-50, 53.25% id in 246 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 70062 3337683 CAB055 Chlamydophila abortus S26/3 hypothetical protein YP_219487.1 69274 R 218497 CDS YP_219488.1 62184703 3337684 complement(70256..70909) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0687 or cp0059 SWALL:Q9Z7L7 (EMBL:AE001651) (217 aa) fasta scores: E(): 2.7e-47, 58.33% id in 216 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 70909 3337684 CAB056 Chlamydophila abortus S26/3 hypothetical protein YP_219488.1 70256 R 218497 CDS YP_219489.1 62184704 3337685 71150..71989 1 NC_004552.2 Similar to Chlamydia pneumoniae probable chromosome partitioning protein parB or cpn0684 or cp0062 SWALL:PARB_CHLPN (SWALL:Q9Z7M0) (286 aa) fasta scores: E(): 5.5e-65, 68.72% id in 275 aa.; chromosome partitioning protein 71989 3337685 CAB057 Chlamydophila abortus S26/3 chromosome partitioning protein YP_219489.1 71150 D 218497 CDS YP_219490.1 62184705 3337686 complement(72028..72996) 1 NC_004552.2 Similar to Chlamydia pneumoniae ABC ATPase dipeptide transport DppF_2 or cpn0683 or cp0064 SWALL:Q9Z7M1 (EMBL:AE001650) (324 aa) fasta scores: E(): 5.1e-72, 65.09% id in 318 aa; peptide ABC transport ATP-binding protein 72996 3337686 CAB058 Chlamydophila abortus S26/3 peptide ABC transport ATP-binding protein YP_219490.1 72028 R 218497 CDS YP_219491.1 62184706 3337652 complement(72989..73951) 1 NC_004552.2 Similar to Chlamydia pneumoniae ABC ATPase dipeptide transport dppD or cpn0682 or cp0065 SWALL:Q9Z7M2 (EMBL:AE001650) (324 aa) fasta scores: E(): 3.3e-73, 68.73% id in 323 aa.; peptide ABC transport ATP-binding protein 73951 dppD 3337652 dppD Chlamydophila abortus S26/3 peptide ABC transport ATP-binding protein YP_219491.1 72989 R 218497 CDS YP_219492.1 62184707 3337687 74005..74679 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0681 or cp0066 or cpj0681 SWALL:Y681_CHLPN (SWALL:Q9Z7M3) (224 aa) fasta scores: E(): 2.2e-70, 77.67% id in 224 aa.; hypothetical protein 74679 3337687 CAB060 Chlamydophila abortus S26/3 hypothetical protein YP_219492.1 74005 D 218497 CDS YP_219493.1 62184708 3337688 74686..75966 1 NC_004552.2 Similar to Chlamydia pneumoniae phosphate permease cpn0680 or cp0067 or cpj0680 SWALL:Y680_CHLPN (SWALL:Q9Z7M4) (426 aa) fasta scores: E(): 3.4e-130, 79.81% id in 426 aa; phosphate permease 75966 3337688 CAB061 Chlamydophila abortus S26/3 phosphate permease YP_219493.1 74686 D 218497 CDS YP_219494.1 62184709 3337662 76004..77215 1 NC_004552.2 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 77215 pgk 3337662 pgk Chlamydophila abortus S26/3 phosphoglycerate kinase YP_219494.1 76004 D 218497 CDS YP_219495.1 62184710 3337689 77681..79186 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00062 SWALL:Q824S7 (EMBL:AE016994) (463 aa) fasta scores: E(): 2.8e-44, 57.2% id in 500 aa and weakly to Chlamydia pneumoniae hypothetical protein cpn0677 or cpj0677 or cp0070 SWALL:Q9Z7M7 (EMBL:AE001650) (382 aa) fasta scores: E(): 5.6e-07, 26.73% id in 318 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 79186 3337689 CAB063 Chlamydophila abortus S26/3 hypothetical protein YP_219495.1 77681 D 218497 CDS YP_219496.1 62184711 3337690 79200..80372 1 NC_004552.2 Similar to Chlamydia pneumoniae cpn0676 or cpj0676 or cp0071 SWALL:Q9Z7M8 (EMBL:AE001650) (389 aa) fasta scores: E(): 3.6e-38, 35.73% id in 403 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins; hypothetical protein 80372 3337690 CAB064 Chlamydophila abortus S26/3 hypothetical protein YP_219496.1 79200 D 218497 CDS YP_219497.1 62184712 3337691 80525..81679 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0675 or cp0072 or cpj0675 SWALL:Y675_CHLPN (SWALL:Q9Z7M9) (384 aa) fasta scores: E(): 4.2e-69, 49.34% id in 383 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 81679 3337691 CAB065 Chlamydophila abortus S26/3 hypothetical protein YP_219497.1 80525 D 218497 CDS YP_219498.1 62184713 3337693 complement(82921..83283) 1 NC_004552.2 hypothetical protein 83283 3337693 CAB068 Chlamydophila abortus S26/3 hypothetical protein YP_219498.1 82921 R 218497 CDS YP_219499.1 62184714 3337694 complement(83366..84667) 1 NC_004552.2 Similar to Chlamydia pneumoniae D-ala-d-ala carboxypeptidase DacF or cpn0672 or cp0075 SWALL:Q9Z7N2 (EMBL:AE001649) (436 aa) fasta scores: E(): 7.5e-106, 61.37% id in 435 aa, and to Bacillus subtilis penicillin-binding protein DacF precursor SWALL:DACF_BACSU (SWALL:P38422) (389 aa) fasta scores: E(): 9.7e-12, 29.23% id in 366 aa; D-alanyl-d-alanine carboxypeptidase 84667 3337694 CAB069 Chlamydophila abortus S26/3 D-alanyl-d-alanine carboxypeptidase YP_219499.1 83366 R 218497 CDS YP_219500.1 62184715 3337696 complement(85199..85624) 1 NC_004552.2 Similar to Chlamydia pneumoniae sigma regulatory factor-histidine kinase RsbW or cpn0670 SWALL:Q9Z7N4 (EMBL:AE001649) (144 aa) fasta scores: E(): 1.2e-33, 65.71% id in 140 aa and to Bacillus subtilis anti-sigma b factor RsbW SWALL:RSBW_BACSU (SWALL:P17904) (160 aa) fasta scores: E(): 0.0011, 26.66% id in 120 aa; sigma regulatory factor-histidine kinase 85624 3337696 CAB071 Chlamydophila abortus S26/3 sigma regulatory factor-histidine kinase YP_219500.1 85199 R 218497 CDS YP_219501.1 62184716 3337697 complement(85611..86210) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct548 hypothetical protein cpn0669 or cpj0669 or cp0078 SWALL:Q9Z7N5 (EMBL:AE001649) (199 aa) fasta scores: E(): 6.7e-46, 64.61% id in 195 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein 86210 3337697 CAB072 Chlamydophila abortus S26/3 lipoprotein YP_219501.1 85611 R 218497 CDS YP_219502.1 62184717 3337698 complement(86227..87183) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct547 hypothetical protein cpn0668 or cpj0668 SWALL:Q9Z7N6 (EMBL:AE001649) (318 aa) fasta scores: E(): 2.4e-85, 69.81% id in 318 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein 87183 3337698 CAB073 Chlamydophila abortus S26/3 lipoprotein YP_219502.1 86227 R 218497 CDS YP_219503.1 62184718 3337699 87336..88220 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0667 or cpj0667 or cp0080 SWALL:Q9Z7N7 (EMBL:AE001649) (294 aa) fasta scores: E(): 4.4e-89, 68.7% id in 294 aa, and to Chlamydia trachomatis predicted omp ct546 SWALL:O84550 (EMBL:AE001325) (289 aa) fasta scores: E(): 4.4e-69, 58.76% id in 291 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 88220 3337699 CAB074 Chlamydophila abortus S26/3 hypothetical protein YP_219503.1 87336 D 218497 CDS YP_219504.1 62184719 3337645 complement(88217..91963) 1 NC_004552.2 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 91963 dnaE 3337645 dnaE Chlamydophila abortus S26/3 DNA polymerase III subunit alpha YP_219504.1 88217 R 218497 CDS YP_219505.1 62184720 3337700 complement(91970..93337) 1 NC_004552.2 Similar to Chlamydia trachomatis probable hexose phosphate transport protein ct544 SWALL:UHPT_CHLTR (SWALL:O84548) (456 aa) fasta scores: E(): 1.8e-162, 83.85% id in 452 aa, and to Bacillus subtilis glycerol-3-phosphate transporter GlpT SWALL:GLPT_BACSU (SWALL:P37948) (444 aa) fasta scores: E(): 3.9e-60, 41.11% id in 450 aa; hexose phosphate transport protein 93337 3337700 CAB076 Chlamydophila abortus S26/3 hexose phosphate transport protein YP_219505.1 91970 R 218497 CDS YP_219506.1 62184721 3337701 93583..93783 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0664 or cpj0664 or cp0083 SWALL:Q9Z7P0 (EMBL:AE001649) (67 aa) fasta scores: E(): 1.3, 32.14% id in 56 aa. No other significant database matches.; hypothetical protein 93783 3337701 CAB077 Chlamydophila abortus S26/3 hypothetical protein YP_219506.1 93583 D 218497 CDS YP_219507.1 62184722 3337996 93851..95143 1 NC_004552.2 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 95143 hisS 3337996 hisS Chlamydophila abortus S26/3 histidyl-tRNA synthetase YP_219507.1 93851 D 218497 CDS YP_219508.1 62184723 3337265 95118..96872 1 NC_004552.2 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 96872 aspS 3337265 aspS Chlamydophila abortus S26/3 aspartyl-tRNA synthetase YP_219508.1 95118 D 218497 CDS YP_219509.1 62184724 3337460 96948..97715 1 NC_004552.2 Similar to Chlamydophila caviae Mip protein SWALL:Q46176 (EMBL:L39892) (255 aa) fasta scores: E(): 3e-77, 87.05% id in 255 aa, and to Chlamydia pneumoniae peptidyl-prolyl cis-trans isomerase Mip precursor or cpn0661 or cp0086 SWALL:MIP_CHLPN (SWALL:Q9Z7P3) (258 aa) fasta scores: E(): 2.6e-63, 72.58% id in 248 aa; macrophage infectivity potentiator lipoprotein 97715 mip 3337460 mip Chlamydophila abortus S26/3 macrophage infectivity potentiator lipoprotein YP_219509.1 96948 D 218497 CDS YP_219510.1 62184725 3337702 97712..98182 1 NC_004552.2 Similar to Chlamydophila caviae SpoU protein SWALL:Q46177 (EMBL:L39892) (156 aa) fasta scores: E(): 3.1e-56, 91.02% id in 156 aa, and to Chlamydia muridarum SpoU rRNA methylase tc0827 SWALL:Q9PJK2 (EMBL:AE002349) (151 aa) fasta scores: E(): 1.2e-40, 67.78% id in 149 aa; rRNA methylase 98182 3337702 CAB081 Chlamydophila abortus S26/3 rRNA methylase YP_219510.1 97712 D 218497 CDS YP_219511.1 62184726 3338234 complement(98179..98487) 1 NC_004552.2 Similar to Chlamydia psittaci thioredoxin TrxA SWALL:THIO_CHLPS (SWALL:P52227) (102 aa) fasta scores: E(): 6.4e-35, 90.19% id in 102 aa, and to Oenococcus oeni thioredoxin TrxA SWALL:Q8RKA7 (EMBL:X93091) (104 aa) fasta scores: E(): 2.3e-13, 39% id in 100 aa; thioredoxin 98487 trxA 3338234 trxA Chlamydophila abortus S26/3 thioredoxin YP_219511.1 98179 R 218497 CDS YP_219512.1 62184727 3337703 99612..100334 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0658 or cp0089 or cpj0658 SWALL:Y658_CHLPN (SWALL:Q9Z7P6) (238 aa) fasta scores: E(): 3e-80, 86.55% id in 238 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 100334 3337703 CAB083 Chlamydophila abortus S26/3 hypothetical protein YP_219512.1 99612 D 218497 CDS YP_219513.1 62184728 3337704 100313..100774 1 NC_004552.2 Similar to Chlamydia pneumoniae YjeE hypothetical protein cpn0657 or cp0090 SWALL:Q9Z7P7 (EMBL:AE001648) (141 aa) fasta scores: E(): 3.2e-34, 63.12% id in 141 aa.; hypothetical protein 100774 3337704 CAB084 Chlamydophila abortus S26/3 hypothetical protein YP_219513.1 100313 D 218497 CDS YP_219514.1 62184729 3337646 100784..101533 1 NC_004552.2 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 101533 dnaF 3337646 dnaF Chlamydophila abortus S26/3 DNA polymerase III subunit epsilon YP_219514.1 100784 D 218497 CDS YP_219515.1 62184730 3337705 101692..102162 1 NC_004552.2 Similar to Chlamydia pneumoniae acyl-coA thioester hydrolase cpn0654 or cp0093 or cpj0654 SWALL:Y654_CHLPN (SWALL:Q9Z7Q0) (155 aa) fasta scores: E(): 3.9e-58, 89.61% id in 154 aa, and to Bacillus subtilis acyl-coA thioester hydrolase YkhA SWALL:YKHA_BACSU (SWALL:P49851) (179 aa) fasta scores: E(): 2.2e-15, 37.01% id in 154 aa; acyl-CoA thioester hydrolase 102162 3337705 CAB086 Chlamydophila abortus S26/3 acyl-CoA thioester hydrolase YP_219515.1 101692 D 218497 CDS YP_219516.1 62184731 3337706 102170..103795 1 NC_004552.2 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 103795 lnt 3337706 lnt Chlamydophila abortus S26/3 apolipoprotein N-acyltransferase YP_219516.1 102170 D 218497 CDS YP_219517.1 62184732 3337455 103810..104667 1 NC_004552.2 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 104667 lpxC 3337455 lpxC Chlamydophila abortus S26/3 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_219517.1 103810 D 218497 CDS YP_219518.1 62184733 3338042 104682..105146 1 NC_004552.2 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 105146 fabZ 3338042 fabZ Chlamydophila abortus S26/3 (3R)-hydroxymyristoyl-ACP dehydratase YP_219518.1 104682 D 218497 CDS YP_219519.1 62184734 3337454 105156..105995 1 NC_004552.2 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 105995 lpxA 3337454 lpxA Chlamydophila abortus S26/3 UDP-N-acetylglucosamine acyltransferase YP_219519.1 105156 D 218497 CDS YP_219520.1 62184735 3338046 105985..106950 1 NC_004552.2 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 106950 fmt 3338046 fmt Chlamydophila abortus S26/3 methionyl-tRNA formyltransferase YP_219520.1 105985 D 218497 CDS YP_219521.1 62184736 3337707 107060..108034 1 NC_004552.2 Similar to Chlamydia pneumoniae ct529 hypothetical protein cpn0648 or cpj0648 or cp0099 SWALL:Q9Z7Q6 (EMBL:AE001648) (333 aa) fasta scores: E(): 2.4e-43, 43.47% id in 299 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 108034 3337707 CAB092 Chlamydophila abortus S26/3 hypothetical protein YP_219521.1 107060 D 218497 CDS YP_219522.1 62184737 3337477 108328..108993 1 NC_004552.2 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 108993 rplC 3337477 rplC Chlamydophila abortus S26/3 50S ribosomal protein L3 YP_219522.1 108328 D 218497 CDS YP_219523.1 62184738 3337478 109010..109684 1 NC_004552.2 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 109684 rplD 3337478 rplD Chlamydophila abortus S26/3 50S ribosomal protein L4 YP_219523.1 109010 D 218497 CDS YP_219524.1 62184739 3337495 109701..110036 1 NC_004552.2 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 110036 rplW 3337495 rplW Chlamydophila abortus S26/3 50S ribosomal protein L23 YP_219524.1 109701 D 218497 CDS YP_219525.1 62184740 3337476 110058..110912 1 NC_004552.2 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 110912 rplB 3337476 rplB Chlamydophila abortus S26/3 50S ribosomal protein L2 YP_219525.1 110058 D 218497 CDS YP_219526.1 62184741 3338120 110918..111184 1 NC_004552.2 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 111184 rpsS 3338120 rpsS Chlamydophila abortus S26/3 30S ribosomal protein S19 YP_219526.1 110918 D 218497 CDS YP_219527.1 62184742 3337494 111203..111538 1 NC_004552.2 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 111538 rplV 3337494 rplV Chlamydophila abortus S26/3 50S ribosomal protein L22 YP_219527.1 111203 D 218497 CDS YP_219528.1 62184743 3338106 111547..112218 1 NC_004552.2 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 112218 rpsC 3338106 rpsC Chlamydophila abortus S26/3 30S ribosomal protein S3 YP_219528.1 111547 D 218497 CDS YP_219529.1 62184744 3337488 112248..112661 1 NC_004552.2 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 112661 rplP 3337488 rplP Chlamydophila abortus S26/3 50S ribosomal protein L16 YP_219529.1 112248 D 218497 CDS YP_219530.1 62184745 3338094 112668..112886 1 NC_004552.2 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 112886 rpmC 3338094 rpmC Chlamydophila abortus S26/3 50S ribosomal protein L29 YP_219530.1 112668 D 218497 CDS YP_219531.1 62184746 3338118 112879..113130 1 NC_004552.2 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 113130 rpsQ 3338118 rpsQ Chlamydophila abortus S26/3 30S ribosomal protein S17 YP_219531.1 112879 D 218497 CDS YP_219532.1 62184747 3337486 113165..113533 1 NC_004552.2 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 113533 rplN 3337486 rplN Chlamydophila abortus S26/3 50S ribosomal protein L14 YP_219532.1 113165 D 218497 CDS YP_219533.1 62184748 3337496 113548..113889 1 NC_004552.2 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 113889 rplX 3337496 rplX Chlamydophila abortus S26/3 50S ribosomal protein L24 YP_219533.1 113548 D 218497 CDS YP_219534.1 62184749 3337479 113891..114433 1 NC_004552.2 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 114433 rplE 3337479 rplE Chlamydophila abortus S26/3 50S ribosomal protein L5 YP_219534.1 113891 D 218497 CDS YP_219535.1 62184750 3338110 114452..114853 1 NC_004552.2 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 114853 rpsH 3338110 rpsH Chlamydophila abortus S26/3 30S ribosomal protein S8 YP_219535.1 114452 D 218497 CDS YP_219536.1 62184751 3337480 114885..115436 1 NC_004552.2 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 115436 rplF 3337480 rplF Chlamydophila abortus S26/3 50S ribosomal protein L6 YP_219536.1 114885 D 218497 CDS YP_219537.1 62184752 3337490 115459..115830 1 NC_004552.2 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 115830 rplR 3337490 rplR Chlamydophila abortus S26/3 50S ribosomal protein L18 YP_219537.1 115459 D 218497 CDS YP_219538.1 62184753 3338107 115846..116343 1 NC_004552.2 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 116343 rpsE 3338107 rpsE Chlamydophila abortus S26/3 30S ribosomal protein S5 YP_219538.1 115846 D 218497 CDS YP_219539.1 62184754 3337487 116336..116770 1 NC_004552.2 late assembly protein; 50S ribosomal protein L15 116770 rplO 3337487 rplO Chlamydophila abortus S26/3 50S ribosomal protein L15 YP_219539.1 116336 D 218497 CDS YP_219540.1 62184755 3338204 116795..118168 1 NC_004552.2 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 118168 secY 3338204 secY Chlamydophila abortus S26/3 preprotein translocase subunit SecY YP_219540.1 116795 D 218497 CDS YP_219541.1 62184756 3338114 118224..118592 1 NC_004552.2 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 118592 rpsM 3338114 rpsM Chlamydophila abortus S26/3 30S ribosomal protein S13 YP_219541.1 118224 D 218497 CDS YP_219542.1 62184757 3338113 118613..119011 1 NC_004552.2 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 119011 rpsK 3338113 rpsK Chlamydophila abortus S26/3 30S ribosomal protein S11 YP_219542.1 118613 D 218497 CDS YP_219543.1 62184758 3338100 119032..120162 1 NC_004552.2 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 120162 rpoA 3338100 rpoA Chlamydophila abortus S26/3 DNA-directed RNA polymerase subunit alpha YP_219543.1 119032 D 218497 CDS YP_219544.1 62184759 3337489 120171..120599 1 NC_004552.2 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 120599 rplQ 3337489 rplQ Chlamydophila abortus S26/3 50S ribosomal protein L17 YP_219544.1 120171 D 218497 CDS YP_219545.1 62184760 3338051 120638..121645 1 NC_004552.2 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 121645 gapA 3338051 gapA Chlamydophila abortus S26/3 glyceraldehyde-3-phosphate dehydrogenase YP_219545.1 120638 D 218497 CDS YP_219546.1 62184761 3337708 121658..122479 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0623/cp0124/cpj0623 cpn0623 or cp0124 or cpj0623 SWALL:Y623_CHLPN (SWALL:Q9Z7T1) (277 aa) fasta scores: E(): 6.7e-61, 69.45% id in 275 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 122479 3337708 CAB116 Chlamydophila abortus S26/3 hypothetical protein YP_219546.1 121658 D 218497 CDS YP_219547.1 62184762 3337709 122987..123889 1 NC_004552.2 Similar to Chlamydia pneumoniae ct503 hypothetical protein cpn0622 or cpj0622 or cp0125 SWALL:Q9Z7T2 (EMBL:AE001646) (320 aa) fasta scores: E(): 2.7e-31, 45.72% id in 304 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 123889 3337709 CAB117 Chlamydophila abortus S26/3 hypothetical protein YP_219547.1 122987 D 218497 CDS YP_219548.2 161501898 3338197 123997..124503 1 NC_004552.2 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 124503 ruvC 3338197 ruvC Chlamydophila abortus S26/3 Holliday junction resolvase YP_219548.2 123997 D 218497 CDS YP_219549.2 161501897 3338123 124503..125126 1 NC_004552.2 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 125126 ruvA 3338123 ruvA Chlamydophila abortus S26/3 Holliday junction DNA helicase RuvA YP_219549.2 124503 D 218497 CDS YP_219550.1 62184765 3337465 125197..125622 1 NC_004552.2 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 125622 ndk 3337465 ndk Chlamydophila abortus S26/3 nucleoside diphosphate kinase YP_219550.1 125197 D 218497 CDS YP_219551.1 62184766 3337710 complement(125635..126336) 1 NC_004552.2 Similar to Chlamydia pneumoniae lipoate-protein ligase a lpla_2 or cpn0618 or cp0129 SWALL:Q9Z7T6 (EMBL:AE001646) (235 aa) fasta scores: E(): 1.1e-59, 59.82% id in 234 aa; hypothetical protein 126336 3337710 CAB121 Chlamydophila abortus S26/3 hypothetical protein YP_219551.1 125635 R 218497 CDS YP_219552.1 62184767 3338055 complement(126323..128158) 1 NC_004552.2 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 128158 gidA 3338055 gidA Chlamydophila abortus S26/3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_219552.1 126323 R 218497 CDS YP_219553.1 62184768 3337644 complement(128620..130065) 1 NC_004552.2 unwinds double stranded DNA; replicative DNA helicase 130065 dnaB 3337644 dnaB Chlamydophila abortus S26/3 replicative DNA helicase YP_219553.1 128620 R 218497 CDS YP_219554.1 62184769 3337762 130703..131209 1 NC_004552.2 Similar to Chlamydia pneumoniae glycerol-3-p phosphatidyltransferase PgsA_1 or cpn0615 or cp0132 SWALL:Q9Z7T9 (EMBL:AE001646) (168 aa) fasta scores: E(): 6.8e-50, 74.25% id in 167 aa and to Rhodobacter sphaeroides phosphatidylglycerol phosphate synthase PgsA; alcohol phosphatidyltransferase 131209 3337762 CAB124 Chlamydophila abortus S26/3 alcohol phosphatidyltransferase YP_219554.1 130703 D 218497 CDS YP_219555.1 62184770 3337466 131446..133095 1 NC_004552.2 Similar to Chlamydia trachomatis nucleoside triphosphate transport protein 2 npt2 SWALL:Q9X9D2 (EMBL:AJ010587) (540 aa) fasta scores: E(): 2.8e-69, 65.2% id in 549 aa; nucleoside triphosphate transport protein 2 133095 npt2 3337466 npt2 Chlamydophila abortus S26/3 nucleoside triphosphate transport protein 2 YP_219555.1 131446 D 218497 CDS YP_219556.1 62184771 3338208 133198..134205 1 NC_004552.2 Similar to Chlamydia pneumoniae protease sohB or cpn0613 or cp0134 SWALL:Q9Z7U1 (EMBL:AE001645) (333 aa) fasta scores: E(): 1.4e-87, 69.9% id in 319 aa; exported protease 134205 sohB 3338208 sohB Chlamydophila abortus S26/3 exported protease YP_219556.1 133198 D 218497 CDS YP_219557.1 62184772 3338066 134233..136842 1 NC_004552.2 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 136842 polA 3338066 polA Chlamydophila abortus S26/3 DNA polymerase I YP_219557.1 134233 D 218497 CDS YP_219558.1 62184773 3337763 136827..137444 1 NC_004552.2 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 137444 coaE 3337763 coaE Chlamydophila abortus S26/3 dephospho-CoA kinase YP_219558.1 136827 D 218497 CDS YP_219559.1 62184774 3338082 137441..138835 1 NC_004552.2 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 138835 rho 3338082 rho Chlamydophila abortus S26/3 transcription termination factor Rho YP_219559.1 137441 D 218497 CDS YP_219560.1 62184775 3337764 complement(139101..139361) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct490 hypothetical protein cpn0609 or cpj0609 or cp0138 SWALL:Q9Z7U5 (EMBL:AE001645) (94 aa) fasta scores: E(): 1.2e-08, 44.18% id in 86 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 139361 3337764 CAB130 Chlamydophila abortus S26/3 hypothetical protein YP_219560.1 139101 R 218497 CDS YP_219561.2 161501896 3338072 139423..140043 1 NC_004552.2 catalyzes the formation of orotidine monophosphate from 5-phosphoribosyl-1-pyrophosphate and orotate; orotate phosphoribosyltransferase 140043 pyrE 3338072 pyrE Chlamydophila abortus S26/3 orotate phosphoribosyltransferase YP_219561.2 139423 D 218497 CDS YP_219562.1 62184777 3338057 140157..141509 1 NC_004552.2 Similar to Chlamydia trachomatis glucose-1-p adenyltransferase GlgC or ct489 SWALL:O84496 (EMBL:AE001322) (441 aa) fasta scores: E(): 1.3e-138, 75.87% id in 427 aa, and to Solanum tuberosum glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor SWALL:GLGS_SOLTU (SWALL:P23509) (521 aa) fasta scores: E(): 3.4e-53, 35.38% id in 438 aa; glucose-1-phosphate adenyltransferase 141509 glgC 3338057 glgC Chlamydophila abortus S26/3 glucose-1-phosphate adenyltransferase YP_219562.1 140157 D 218497 CDS YP_219563.1 62184778 3337765 141624..142367 1 NC_004552.2 Similar to Chlamydia pneumoniae ct488 hypothetical protein cpn0606 or cpj0606 or cp0141 SWALL:Q9Z7U8 (EMBL:AE001645) (246 aa) fasta scores: E(): 1.7e-71, 68.01% id in 247 aa; hypothetical protein 142367 3337765 CAB133 Chlamydophila abortus S26/3 hypothetical protein YP_219563.1 141624 D 218497 CDS YP_219564.1 62184779 3337766 142364..142927 1 NC_004552.2 Similar to Chlamydia trachomatis methylase yhhf or ct487 SWALL:O84494 (EMBL:AE001322) (190 aa) fasta scores: E(): 7.5e-45, 66.31% id in 187 aa; hypothetical protein 142927 3337766 CAB134 Chlamydophila abortus S26/3 hypothetical protein YP_219564.1 142364 D 218497 CDS YP_219565.1 62184780 3337767 143128..143880 1 NC_004552.2 Similar to Chlamydia pneumoniae glutamine binding protein FliY or cpn0604 or cp0143 SWALL:Q9Z7V0 (EMBL:AE001645) (250 aa) fasta scores: E(): 3.2e-73, 74.8% id in 250 aa; transport lipoprotein 143880 3337767 CAB135 Chlamydophila abortus S26/3 transport lipoprotein YP_219565.1 143128 D 218497 CDS YP_219566.1 62184781 3337994 complement(143885..144841) 1 NC_004552.2 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 144841 hemH 3337994 hemH Chlamydophila abortus S26/3 ferrochelatase YP_219566.1 143885 R 218497 CDS YP_219567.1 62184782 3337768 144935..145942 1 NC_004552.2 Similar to Chlamydia pneumoniae ct484 hypothetical protein cpn0602 or cpj0602 or cp0145 SWALL:Q9Z7V2 (EMBL:AE001645) (334 aa) fasta scores: E(): 3.4e-103, 78.32% id in 323 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 145942 3337768 CAB137 Chlamydophila abortus S26/3 hypothetical protein YP_219567.1 144935 D 218497 CDS YP_219568.1 62184783 3337769 145996..146319 1 NC_004552.2 Similar to Chlamydia pneumoniae ct483 hypothetical protein cpn0601 or cpj0601 or cp0146 SWALL:Q9Z7V3 (EMBL:AE001645) (106 aa) fasta scores: E(): 2e-17, 54% id in 100 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 146319 3337769 CAB138 Chlamydophila abortus S26/3 hypothetical protein YP_219568.1 145996 D 218497 CDS YP_219569.1 62184784 3337770 147525..147725 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00141 SWALL:Q824K4 (EMBL:AE016994) (54 aa) fasta scores: E(): 8.9e-06, 52.83% id in 53 aa. Note the differing N-termini. Also weakly similar to Chlamydia pneumoniae hypothetical protein Cp0147 cp0147 SWALL:Q9K2D5 (EMBL:AE002176) (65 aa) fasta scores: E(): 4.2, 35.59% id in 59 aa; lipoprotein 147725 3337770 CAB139 Chlamydophila abortus S26/3 lipoprotein YP_219569.1 147525 D 218497 CDS YP_219570.1 62184785 3337771 148659..150776 1 NC_004552.2 Similar to Chlamydia pneumoniae oligopeptide binding lipoprotein AppA_5 or cpn0599 or cp0149 SWALL:Q9Z7V5 (EMBL:AE001644) (707 aa) fasta scores: E(): 0, 71.65% id in 709 aa, and to Bacillus subtilis oligopeptide-binding protein AppA precursor appA SWALL:APPA_BACSU (SWALL:P42061) (543 aa) fasta scores: E(): 1.3e-18, 33.08% id in 263 aa, and to Escherichia coli nickel-binding periplasmic protein precursor nika or b3476 SWALL:NIKA_ECOLI (SWALL:P33590) (524 aa) fasta scores: E(): 3.2e-08, 23.68% id in 380 aa; transport protein 150776 3337771 CAB140 Chlamydophila abortus S26/3 transport protein YP_219570.1 148659 D 218497 CDS YP_219571.1 62184786 3337772 150758..152227 1 NC_004552.2 Similar to Chlamydia pneumoniae oligopeptide permease OppB_2 or cpn0598 or cp0150 SWALL:Q9Z7V6 (EMBL:AE001644) (493 aa) fasta scores: E(): 3.8e-147, 71.66% id in 494 aa, and to Escherichia coli, and Escherichia coli O157:H7 dipeptide transport system permease DppB SWALL:DPPB_ECOLI (SWALL:P37316) (339 aa) fasta scores: E(): 1.3e-17, 29.13% id in 278 aa; transport protein 152227 3337772 CAB141 Chlamydophila abortus S26/3 transport protein YP_219571.1 150758 D 218497 CDS YP_219572.1 62184787 3337773 152229..153962 1 NC_004552.2 Similar to Chlamydia pneumoniae oligopeptide permease OppC_2 or cpn0597 or cp0151 SWALL:Q9Z7V7 (EMBL:AE001644) (579 aa) fasta scores: E(): 1.7e-158, 67.64% id in 578 aa and to Escherichia coli, and Escherichia coli O157:H7 oligopeptide transport system permease OppC SWALL:OPPC_ECOLI (SWALL:P77664) (302 aa) fasta scores: E(): 8e-20, 32.27% id in 251 aa; transport protein 153962 3337773 CAB142 Chlamydophila abortus S26/3 transport protein YP_219572.1 152229 D 218497 CDS YP_219573.1 62184788 3337621 complement(153959..154486) 1 NC_004552.2 Similar to Chlamydia pneumoniae methyltransferase ada or cpn0596 or cp0152 SWALL:Q9Z7V8 (EMBL:AE001644) (173 aa) fasta scores: E(): 6.7e-45, 67.06% id in 167 aa, and to Bacillus subtilis methylated-DNA--protein-cysteine methyltransferase adaB SWALL:ADAB_BACSU (SWALL:P19220) (179 aa) fasta scores: E(): 1.5e-05, 39.5% id in 81 aa; DNA methyltransferase 154486 ada 3337621 ada Chlamydophila abortus S26/3 DNA methyltransferase YP_219573.1 153959 R 218497 CDS YP_219574.1 62184789 3337774 complement(154498..155469) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct476 hypothetical protein cpn0595 or cpj0595 or cp0153 SWALL:Q9Z7V9 (EMBL:AE001644) (323 aa) fasta scores: E(): 3.9e-104, 75.85% id in 323 aa; lipoprotein 155469 3337774 CAB144 Chlamydophila abortus S26/3 lipoprotein YP_219574.1 154498 R 218497 CDS YP_219575.1 62184790 3337665 complement(155466..157850) 1 NC_004552.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 157850 pheT 3337665 pheT Chlamydophila abortus S26/3 phenylalanyl-tRNA synthetase subunit beta YP_219575.1 155466 R 218497 CDS YP_219576.1 62184791 3337775 157958..159043 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0593/cp0155/cpj0593 cpn0593 or cp0155 or cpj0593 SWALL:Y593_CHLPN (SWALL:Q9Z7W1) (362 aa) fasta scores: E(): 1.9e-78, 54.27% id in 363 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 159043 3337775 CAB146 Chlamydophila abortus S26/3 hypothetical protein YP_219576.1 157958 D 218497 CDS YP_219577.1 62184792 3337776 complement(158967..159278) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0592/cp0156/cpj0592 cpn0592 or cp0156 or cpj0592 SWALL:Y592_CHLPN (SWALL:Q9Z7W2) (103 aa) fasta scores: E(): 3.7e-25, 62.37% id in 101 aa; hypothetical protein 159278 3337776 CAB147 Chlamydophila abortus S26/3 hypothetical protein YP_219577.1 158967 R 218497 CDS YP_219578.1 62184793 3337777 complement(159268..160062) 1 NC_004552.2 Similar to Chlamydia pneumoniae yage family yage or cpn0591 or cp0157 SWALL:Q9Z7W3 (EMBL:AE001643) (216 aa) fasta scores: E(): 2.9e-73, 84.57% id in 214 aa; hypothetical protein 160062 3337777 CAB148 Chlamydophila abortus S26/3 hypothetical protein YP_219578.1 159268 R 218497 CDS YP_219579.1 62184794 3337778 160344..160934 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0756 tc0756 SWALL:Q9PJS2 (EMBL:AE002343) (209 aa) fasta scores: E(): 5.4e-47, 58.11% id in 191 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; lipoprotein 160934 3337778 CAB149 Chlamydophila abortus S26/3 lipoprotein YP_219579.1 160344 D 218497 CDS YP_219580.1 62184795 3338080 complement(160908..161633) 1 NC_004552.2 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 161633 recO 3338080 recO Chlamydophila abortus S26/3 DNA repair protein RecO YP_219580.1 160908 R 218497 CDS YP_219581.1 62184796 3337779 complement(161638..162222) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct469 hypothetical protein cpn0588 or cpj0588 or cp0160 SWALL:Q9Z7W6 (EMBL:AE001643) (181 aa) fasta scores: E(): 3.6e-40, 58.91% id in 185 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 162222 3337779 CAB151 Chlamydophila abortus S26/3 hypothetical protein YP_219581.1 161638 R 218497 CDS YP_219582.1 62184797 3337780 complement(162167..162850) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein YvyD or cpn0587 or cp0161 SWALL:Q9Z7W7 (EMBL:AE001643) (228 aa) fasta scores: E(): 1.7e-40, 52.65% id in 226 aa. No other significant database matches; hypothetical protein 162850 3337780 CAB152 Chlamydophila abortus S26/3 hypothetical protein YP_219582.1 162167 R 218497 CDS YP_219583.1 62184798 3337781 complement(163150..164310) 1 NC_004552.2 Similar to Chlamydia pneumoniae sigma-54 dependent response regulator cp0162 SWALL:Q9K2D1 (EMBL:AE002177) (394 aa) fasta scores: E(): 6.5e-119, 77.97% id in 386 aa; Fis family transcriptional regulator 164310 3337781 CAB153 Chlamydophila abortus S26/3 Fis family transcriptional regulator YP_219583.1 163150 R 218497 CDS YP_219584.1 62184799 3337782 164494..167532 1 NC_004552.2 hypothetical protein 167532 3337782 CAB154 Chlamydophila abortus S26/3 hypothetical protein YP_219584.1 164494 D 218497 CDS YP_219585.1 62184800 3337266 complement(167548..168600) 1 NC_004552.2 Similar to Chlamydia trachomatis 2-component regulatory system-sensor histidine kinase atos or ct467 SWALL:O84473 (EMBL:AE001320) (352 aa) fasta scores: E(): 4.9e-85, 64.82% id in 344 aa; 2-component regulatory system-sensor histidine kinase 168600 atoS 3337266 atoS Chlamydophila abortus S26/3 2-component regulatory system-sensor histidine kinase YP_219585.1 167548 R 218497 CDS YP_219586.1 62184801 3337783 complement(168581..168970) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct466 hypothetical protein cpn0583 or cpj0583 or cp0165 SWALL:Q9Z7X1 (EMBL:AE001643) (106 aa) fasta scores: E(): 1.4e-23, 72.38% id in 105 aa. Only significant database matches are to predicted Chlamydiaceae proteins. Note the differing N-termini and the alternative possible translational start sites at codon 19 and 22; hypothetical protein 168970 3337783 CAB156 Chlamydophila abortus S26/3 hypothetical protein YP_219586.1 168581 R 218497 CDS YP_219587.1 62184802 3337784 complement(169139..169804) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct465 hypothetical protein cpn0582 or cpj0582 or cp0166 SWALL:Q9Z7X2 (EMBL:AE001642) (225 aa) fasta scores: E(): 3.1e-28, 42.58% id in 209 aa.Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 169804 3337784 CAB157 Chlamydophila abortus S26/3 hypothetical protein YP_219587.1 169139 R 218497 CDS YP_219588.1 62184803 3337785 169965..170654 1 NC_004552.2 Similar to Chlamydia pneumoniae phosphoglycolate phosphatase cpn0581 or cpj0581 SWALL:Q9Z7X3 (EMBL:AE001642) (230 aa) fasta scores: E(): 2.3e-44, 50.66% id in 227 aa, and to Chlamydia pneumoniae hydrolase, haloacid dehalogenase-like family cp0167 SWALL:Q9K2C9 (EMBL:AE002178) (244 aa) fasta scores: E(): 2.5e-44, 50.66% id in 227 aa; hypothetical protein 170654 3337785 CAB158 Chlamydophila abortus S26/3 hypothetical protein YP_219588.1 169965 D 218497 CDS YP_219589.1 62184804 3338232 complement(170600..171406) 1 NC_004552.2 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 171406 truA 3338232 truA Chlamydophila abortus S26/3 tRNA pseudouridine synthase A YP_219589.1 170600 R 218497 CDS YP_219590.1 62184805 3337434 complement(171403..172056) 1 NC_004552.2 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 172056 ispD 3337434 ispD Chlamydophila abortus S26/3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_219590.1 171403 R 218497 CDS YP_219591.1 62184806 3337786 complement(172031..173005) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0578/cp0170/cpj0578 precursor cpn0578 or cp0170 or cpj0578 SWALL:Y578_CHLPN (SWALL:Q9Z7X6) (320 aa) fasta scores: E(): 6.5e-86, 62.92% id in 321 aa; hypothetical protein 173005 3337786 CAB161 Chlamydophila abortus S26/3 hypothetical protein YP_219591.1 172031 R 218497 CDS YP_219592.1 62184807 3337787 complement(173077..173340) 1 NC_004552.2 Similar to Chlamydia pneumoniae SwiB cpn0577 or cpj0577 or cp0171 SWALL:Q9Z7X7 (EMBL:AE001642) (87 aa) fasta scores: E(): 1.1e-26, 85.05% id in 87 aa, and to Chlamydia muridarum hypothetical protein Tc0745 SWALL:Q9PJT3 (EMBL:AE002343) (86 aa) fasta scores: E(): 7.3e-25, 78.16% id in 87 aa; hypothetical protein 173340 3337787 CAB162 Chlamydophila abortus S26/3 hypothetical protein YP_219592.1 173077 R 218497 CDS YP_219593.1 62184808 3338068 join(173622..173690,173692..174729) 1 NC_004552.2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 174729 prfB 3338068 prfB Chlamydophila abortus S26/3 peptide chain release factor 2 YP_219593.1 173622 D 218497 CDS YP_219594.1 62184809 3337788 174726..175238 1 NC_004552.2 Similar to Chlamydia pneumoniae amino group acetyl transferase YhhY or cpn0575 or cp0174 SWALL:Q9Z7X8 (EMBL:AE001642) (171 aa) fasta scores: E(): 1.8e-56, 78.57% id in 168 aa; transferase 175238 3337788 CAB164 Chlamydophila abortus S26/3 transferase YP_219594.1 174726 D 218497 CDS YP_219595.1 62184810 3337790 175817..176533 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0742 tc0742 SWALL:Y742_CHLMU (SWALL:Q9PJT5) (238 aa) fasta scores: E(): 1.4e-79, 85.65% id in 237 aa; hypothetical protein 176533 3337790 CAB166 Chlamydophila abortus S26/3 hypothetical protein YP_219595.1 175817 D 218497 CDS YP_219596.1 62184811 3337791 complement(176574..179186) 1 NC_004552.2 Similar to Chlamydia pneumoniae protein cpn0572 or cp0177 or cpj0572 SWALL:Y572_CHLPN (SWALL:Q9Z7Y1) (755 aa) fasta scores: E(): 2.5e-77, 40.89% id in 802 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 179186 3337791 CAB167 Chlamydophila abortus S26/3 hypothetical protein YP_219596.1 176574 R 218497 CDS YP_219597.1 62184812 3337792 179419..180753 1 NC_004552.2 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 180753 3337792 CAB168 Chlamydophila abortus S26/3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_219597.1 179419 D 218497 CDS YP_219598.1 62184813 3337258 complement(180756..182444) 1 NC_004552.2 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 182444 argS 3337258 argS Chlamydophila abortus S26/3 arginyl-tRNA synthetase YP_219598.1 180756 R 218497 CDS YP_219599.1 62184814 3337529 complement(182445..183092) 1 NC_004552.2 Similar to Chlamydia pneumoniae glycerol-3-p acyltransferase PlsC or cpn0569 or cp0180 SWALL:Q9Z7Y4 (EMBL:AE001641) (212 aa) fasta scores: E(): 1e-58, 61.39% id in 215 aa; hypothetical protein 183092 3337529 CAB170 Chlamydophila abortus S26/3 hypothetical protein YP_219599.1 182445 R 218497 CDS YP_219600.1 62184815 3337637 complement(183089..183739) 1 NC_004552.2 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 183739 cmk 3337637 cmk Chlamydophila abortus S26/3 cytidylate kinase YP_219600.1 183089 R 218497 CDS YP_219601.1 62184816 3337530 complement(183736..184656) 1 NC_004552.2 Similar to Chlamydia pneumoniae phosphatidate cytidylyltransferase CdsA or cpn0567 or cp0182 SWALL:CDSA_CHLPN (SWALL:Q9Z7Y6) (308 aa) fasta scores: E(): 1.6e-86, 72.96% id in 307 aa; hypothetical protein 184656 3337530 CAB172 Chlamydophila abortus S26/3 hypothetical protein YP_219601.1 183736 R 218497 CDS YP_219602.1 62184817 3337531 complement(184659..185411) 1 NC_004552.2 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 185411 3337531 CAB173 Chlamydophila abortus S26/3 undecaprenyl pyrophosphate synthase YP_219602.1 184659 R 218497 CDS YP_219603.1 62184818 3337532 185994..187106 1 NC_004552.2 Similar to Chlamydia pneumoniae ct449 hypothetical protein cpn0565 or cpj0565 or cp0185 SWALL:Q9Z7Y8 (EMBL:AE001641) (366 aa) fasta scores: E(): 2e-30, 32.05% id in 365 aa. Only significant database prokaryotic matches are to predicted Chlamydiaceae proteins.; hypothetical protein 187106 3337532 CAB174 Chlamydophila abortus S26/3 hypothetical protein YP_219603.1 185994 D 218497 CDS YP_219604.1 62184819 3337533 187355..191569 1 NC_004552.2 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; in these organisms there is an unknown N-terminal domain; bifunctional preprotein translocase subunit SecD/SecF 191569 3337533 CAB175 Chlamydophila abortus S26/3 bifunctional preprotein translocase subunit SecD/SecF YP_219604.1 187355 D 218497 CDS YP_219605.1 62184820 3337534 191662..193434 1 NC_004552.2 Similar to Chlamydia psittaci ssdna-specific exonuclease RecJ SWALL:P94659 (EMBL:AF058396) (519 aa) fasta scores: E(): 6.2e-178, 90.17% id in 519 aa, and to Chlamydia pneumoniae ssdna exonuclease RecJ or cpn0563 or cp0187 SWALL:Q9Z7Z0 (EMBL:AE001641) (588 aa) fasta scores: E(): 3.2e-159, 72.06% id in 580 aa; exonuclease 193434 3337534 CAB176 Chlamydophila abortus S26/3 exonuclease YP_219605.1 191662 D 218497 CDS YP_219606.1 62184821 3337535 193885..195033 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical 43.0 kDa protein SWALL:P94660 (EMBL:U41759) (384 aa) fasta scores: E(): 5.8e-113, 68.96% id in 377 aa, and to Chlamydia pneumoniae chlps 43 kDa protein homolog_1 cpj0562 or cp0188 SWALL:Q9JS10 (EMBL:AE002180) (373 aa) fasta scores: E(): 2.6e-79, 52.23% id in 358 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 195033 3337535 CAB177 Chlamydophila abortus S26/3 hypothetical protein YP_219606.1 193885 D 218497 CDS YP_219607.1 62184822 3337536 195654..196196 1 NC_004552.2 Similar to Chlamydia psittaci early upstream open reading frame SWALL:EUO1_CHLPS (SWALL:Q06566) (182 aa) fasta scores: E(): 2.7e-64, 96.7% id in 182 aa, and to Chlamydia pneumoniae hypothetical protein cpn0561/cp0189/cpj0561 cpn0561 or cp0189 or cpj0561 SWALL:Y561_CHLPN (SWALL:Q9Z7Z2) (178 aa) fasta scores: E(): 1.1e-45, 76.68% id in 163 aa. Only significant full-length database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 196196 3337536 CAB178 Chlamydophila abortus S26/3 hypothetical protein YP_219607.1 195654 D 218497 CDS YP_219608.1 62184823 3337734 196465..197982 1 NC_004552.2 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 197982 gltX 3337734 gltX Chlamydophila abortus S26/3 glutamyl-tRNA synthetase YP_219608.1 196465 D 218497 CDS YP_219609.1 62184824 3337751 198658..198921 1 NC_004552.2 Highly similar to previously sequenced Chlamydophila abortus small cysteine-rich outer membrane lipoprotein OmlA SWALL:Q9AIS8 (EMBL:AF240773) (87 aa) fasta scores: E(): 5.2e-30, 98.85% id in 87 aa, and to Chlamydophila caviae outer membrane protein 3 Omp3 SWALL:P94663 (EMBL:U41759) (88 aa) fasta scores: E(): 8.4e-24, 80.68% id in 88 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; outer membrane lipoprotein 198921 omlA 3337751 omlA Chlamydophila abortus S26/3 outer membrane lipoprotein YP_219609.1 198658 D 218497 CDS YP_219610.1 62184825 3337636 199087..200760 1 NC_004552.2 Previously sequenced as Chlamydophila abortus 60 kDa cysteine-rich membrane complex protein CmcB SWALL:Q9AIS7 (EMBL:AF240773) (557 aa) fasta scores: E(): 0, 100% id in 557 aa, and highly similar to Chlamydia psittaci 60 kDa outer membrane protein precursor Omcb or Mmp2 or EnvB SWALL:OM6_CHLPS (SWALL:P23701) (557 aa) fasta scores: E(): 4.8e-217, 97.3% id in 557 aa, and to Chlamydia pneumoniae 60 kDa outer membrane protein precursor Omcb or Omp2 or cpn0557 or cp0195 SWALL:OM6_CHLPN (SWALL:P23700) (556 aa) fasta scores: E(): 1e-189, 84.38% id in 557 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 200760 cmcB 3337636 cmcB Chlamydophila abortus S26/3 hypothetical protein YP_219610.1 199087 D 218497 CDS YP_219611.1 62184826 3338209 200971..201453 1 NC_004552.2 Previously sequenced as Chlamydophila abortus sulfur-rich protein Srp SWALL:Q9AIS6 (EMBL:AF240773) (134 aa) fasta scores: E(): 5e-47, 100% id in 128 aa, and similar to Chlamydophila caviae hypothetical sulfur-rich protein srP SWALL:P94665 (EMBL:U41759) (160 aa) fasta scores: E(): 3.6e-46, 81.5% id in 146 aa, and to Chlamydia psittaci sulfur-rich protein Srp SWALL:SRP_CHLPS (SWALL:P28164) (134 aa) fasta scores: E(): 1.1e-42, 86.61% id in 127 aa, and to Chlamydia pneumoniae 15 kDa cysteine-rich protein crpa or cpn0556 or cp0196 SWALL:Q9Z7Z6 (EMBL:AE001640) (196 aa) fasta scores: E(): 2.9e-19, 39.75% id in 161 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; Previously sequenced as Chlamydophila abortus sulfur-rich protein srP SWALL:Q9AIS6 (EMBL:AF240773) (134 aa) fasta scores: E(): 5e-47, 100% id in 128 aa; sulfur-rich membrane protein 201453 srp 3338209 srp Chlamydophila abortus S26/3 sulfur-rich membrane protein YP_219611.1 200971 D 218497 CDS YP_219612.1 62184827 3337537 complement(201503..203458) 1 NC_004552.2 Similar to Chlamydia pneumoniae tail-specific protease tsp or cpn0555 or cp0197 SWALL:Q9Z7Z7 (EMBL:AE001640) (648 aa) fasta scores: E(): 5.6e-177, 69.45% id in 645 aa, and to Escherichia coli O157:H7 carboxy-terminal protease for penicillin-binding protein 3 prc or z2877 or ecs2540 SWALL:Q8XCM5 (EMBL:AE005405) (682 aa) fasta scores: E(): 2.4e-31, 30.69% id in 430 aa; exported protease 203458 3337537 CAB183 Chlamydophila abortus S26/3 exported protease YP_219612.1 201503 R 218497 CDS YP_219613.1 62184828 3337538 complement(203586..203864) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct440 hypothetical protein cpn0554 or cpj0554 or cp0198 SWALL:Q9Z7Z8 (EMBL:AE001640) (96 aa) fasta scores: E(): 9.2e-15, 64.93% id in 77 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 203864 3337538 CAB184 Chlamydophila abortus S26/3 hypothetical protein YP_219613.1 203586 R 218497 CDS YP_219614.1 62184829 3337439 203965..204915 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0553 cpn0553 or cpj0553 or cp0199 SWALL:Q9Z7Z9 (EMBL:AE001639) (312 aa) fasta scores: E(): 1.2e-44, 41.39% id in 302 aa.; hypothetical protein 204915 3337439 CAB185 Chlamydophila abortus S26/3 hypothetical protein YP_219614.1 203965 D 218497 CDS YP_219615.1 62184830 3337440 205111..205482 1 NC_004552.2 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 205482 rpsL 3337440 rpsL Chlamydophila abortus S26/3 30S ribosomal protein S12 YP_219615.1 205111 D 218497 CDS YP_219616.1 62184831 3338109 205526..205999 1 NC_004552.2 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 205999 rpsG 3338109 rpsG Chlamydophila abortus S26/3 30S ribosomal protein S7 YP_219616.1 205526 D 218497 CDS YP_219617.1 62184832 3337441 206041..208125 1 NC_004552.2 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 208125 3337441 CAB188 Chlamydophila abortus S26/3 elongation factor G YP_219617.1 206041 D 218497 CDS YP_219618.2 161501895 3338112 208133..208450 1 NC_004552.2 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 208450 rpsJ 3338112 rpsJ Chlamydophila abortus S26/3 30S ribosomal protein S10 YP_219618.2 208133 D 218497 CDS YP_219619.1 62184834 3337442 208468..209517 1 NC_004552.2 Similar to Chlamydia pneumoniae sulfite reductase CysJ or cpn0548 or cp0204 SWALL:Q9Z804 (EMBL:AE001639) (347 aa) fasta scores: E(): 9.2e-79, 56.85% id in 350 aa, and to Escherichia coli sulfite reductase [NADPH] flavoprotein alpha-component CysJ or b2764 SWALL:CYSJ_ECOLI (SWALL:P38038) (598 aa) fasta scores: E(): 2e-19, 30.34% id in 346 aa, and to Physarum polycephalum nitric oxide synthase form b NosB SWALL:Q968Y5 (EMBL:AF145040) (1046 aa) fasta scores: E(): 3.1e-19, 29.85% id in 355 aa; oxidoreductase 209517 3337442 CAB190 Chlamydophila abortus S26/3 oxidoreductase YP_219619.1 208468 D 218497 CDS YP_219620.1 62184835 3337443 complement(209514..210044) 1 NC_004552.2 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 210044 ispF 3337443 ispF Chlamydophila abortus S26/3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_219620.1 209514 R 218497 CDS YP_219621.1 62184836 3337493 211069..211389 1 NC_004552.2 Similar to Chlamydia trachomatis 50S ribosomal protein l21 RplU or rl21 or ct420 SWALL:RL21_CHLTR (SWALL:O84425) (107 aa) fasta scores: E(): 4.3e-29, 75.7% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 50S ribosomal protein l21 RplU SWALL:RL21_ECOLI (SWALL:P02422) (103 aa) fasta scores: E(): 2.6e-12, 41.58% id in 101 aa; 50S ribosomal protein L21 211389 rplU 3337493 rplU Chlamydophila abortus S26/3 50S ribosomal protein L21 YP_219621.1 211069 D 218497 CDS YP_219622.1 62184837 3338036 211420..211668 1 NC_004552.2 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 211668 rpmA 3338036 rpmA Chlamydophila abortus S26/3 50S ribosomal protein L27 YP_219622.1 211420 D 218497 CDS YP_219623.1 62184838 3337612 211784..212791 1 NC_004552.2 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 212791 obgE 3337612 obgE Chlamydophila abortus S26/3 GTPase ObgE YP_219623.1 211784 D 218497 CDS YP_219624.1 62184839 3337613 complement(212689..213582) 1 NC_004552.2 Similar to Chlamydia pneumoniae probable metal transport system membrane protein cpn0543 or cp0209 or cpj0543 SWALL:Y543_CHLPN (SWALL:Q9Z809) (293 aa) fasta scores: E(): 1.9e-82, 78.21% id in 280 aa, and to Listeria monocytogenes hydrophobic membrane protein ZurM SWALL:Q9XDA5 (EMBL:AF104349) (295 aa) fasta scores: E(): 2.6e-17, 23.77% id in 265 aa; transport protein 213582 3337613 CAB195 Chlamydophila abortus S26/3 transport protein YP_219624.1 212689 R 218497 CDS YP_219625.1 62184840 3337614 complement(213579..214298) 1 NC_004552.2 Similar to Chlamydia muridarum probable metal transport system ATP-binding protein Tc0697 SWALL:Y697_CHLMU (SWALL:Q9PJX9) (236 aa) fasta scores: E(): 9.5e-55, 64.13% id in 237 aa, and to Listeria monocytogenes zinc uptake system ATP-binding protein ZurA SWALL:ZURA_LISMO (SWALL:Q9XDA6) (257 aa) fasta scores: E(): 6.6e-18, 36.81% id in 220 aa; ATP-binding ABC transport protein 214298 3337614 CAB196 Chlamydophila abortus S26/3 ATP-binding ABC transport protein YP_219625.1 213579 R 218497 CDS YP_219626.1 62184841 3337615 complement(214295..215131) 1 NC_004552.2 Similar to Chlamydia pneumoniae periplasmic metal-binding protein precursor cpn0541 or cp0211 or cpj0541 SWALL:Y541_CHLPN (SWALL:Q9Z811) (278 aa) fasta scores: E(): 1.4e-67, 58.27% id in 278 aa, and to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.6e-05, 26.69% id in 206 aa; transport poprotein 215131 3337615 CAB197 Chlamydophila abortus S26/3 transport poprotein YP_219626.1 214295 R 218497 CDS YP_219627.1 62184842 3338215 215725..216363 1 NC_004552.2 Similar to Bacillus subtilis thiamine-phosphate pyrophosphorylase ThiE or ThiC SWALL:THIE_BACSU (SWALL:P39594) (222 aa) fasta scores: E(): 1.4e-14, 34.61% id in 182 aa, and to Clostridium acetobutylicum thiamine-phosphate pyrophosphorylase ThiE SWALL:Q97LQ9 (EMBL:AE007564) (211 aa) fasta scores: E(): 3e-21, 37.07% id in 205 aa. No database matches are to predicted Chlamydiaceae proteins.; thiamine-phosphate pyrophosphorylase 216363 thiE 3338215 thiE Chlamydophila abortus S26/3 thiamine-phosphate pyrophosphorylase YP_219627.1 215725 D 218497 CDS YP_219628.1 62184843 3338216 216357..217145 1 NC_004552.2 Similar to Escherichia coli hydroxyethylthiazole kinase ThiM SWALL:THIM_ECOLI (SWALL:P76423) (262 aa) fasta scores: E(): 1.1e-26, 36.62% id in 243 aa. No database matches are to predicted Chlamydiaceae proteins.; hydroxyethylthiazole kinase 217145 thiM 3338216 thiM Chlamydophila abortus S26/3 hydroxyethylthiazole kinase YP_219628.1 216357 D 218497 CDS YP_219629.1 62184844 3337675 complement(217265..222631) 1 NC_004552.2 Similar to Chlamydia muridarum probable outer membrane protein PmpB precursor or tc0694 SWALL:PMPB_CHLMU (SWALL:Q9PJY2) (1672 aa) fasta scores: E(): 3.1e-148, 44.7% id in 1859 aa, and to Chlamydia trachomatis probable outer membrane protein PmpB precursor or ct413 SWALL:PMPB_CHLTR (SWALL:O84418) (1754 aa) fasta scores: E(): 1.5e-132, 42.62% id in 1933 aa, and to Chlamydia pneumoniae probable outer membrane protein Pmp20 precursor or cpn0540 or cp0212 SWALL:PM20_CHLPN (SWALL:Q9Z812) (1723 aa) fasta scores: E(): 2.5e-120, 44.59% id in 1868 aa, and to Chlamydia psittaci polymorphic membrane protein SWALL:Q8VL57 (EMBL:AF243416) (601 aa) fasta scores: E(): 1.6e-14, 27.06% id in 665 aa, and to Chlamydophila abortus Pomp91b precursor SWALL:P71133 (EMBL:U65943) (846 aa) fasta scores: E(): 7.6e-12, 26.18% id in 905 aa; hypothetical protein 222631 pmp1B 3337675 pmp1B Chlamydophila abortus S26/3 hypothetical protein YP_219629.1 217265 R 218497 CDS YP_219630.1 62184845 3337676 complement(222833..225634) 1 NC_004552.2 Similar to Chlamydia pneumoniae probable outer membrane protein Pmp19 precursor or cpn0539 or cp0213 SWALL:PM19_CHLPN (SWALL:Q9Z813) (947 aa) fasta scores: E(): 2.5e-83, 47.68% id in 950 aa, and to Chlamydia muridarum probable outer membrane protein PmpA precursor or tc0693 SWALL:PMPA_CHLMU (SWALL:Q9PJY3) (976 aa) fasta scores: E(): 1.4e-78, 38.84% id in 937 aa, and to Chlamydia trachomatis probable outer membrane protein PmpA precursor or ct412 SWALL:PMPA_CHLTR (SWALL:O84417) (975 aa) fasta scores: E(): 1e-74, 38.95% id in 937 aa, and to Chlamydophila abortus Pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 1.2e-29, 26.44% id in 779 aa, and to Chlamydia psittaci PomP90b precursor SWALL:P77792 (EMBL:U65943) (839 aa) fasta scores: E(): 1.6e-29, 25.09% id in 837 aa; hypothetical protein 225634 pmp2A 3337676 pmp2A Chlamydophila abortus S26/3 hypothetical protein YP_219630.1 222833 R 218497 CDS YP_219631.1 62184846 3337616 complement(225855..226157) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct814 hypothetical protein cpn0538 or cpj0538 or cp0214 SWALL:Q9Z814 (EMBL:AE001638) (100 aa) fasta scores: E(): 1.9e-23, 65.34% id in 101 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 226157 3337616 CAB202 Chlamydophila abortus S26/3 hypothetical protein YP_219631.1 225855 R 218497 CDS YP_219632.1 62184847 3337617 complement(226182..226535) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct814.1 hypothetical protein cpn0537 or cpj0537 or cp0215 SWALL:Q9Z815 (EMBL:AE001638) (119 aa) fasta scores: E(): 1.2e-18, 51.42% id in 105 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 226535 3337617 CAB203 Chlamydophila abortus S26/3 hypothetical protein YP_219632.1 226182 R 218497 CDS YP_219633.1 62184848 3337618 complement(226736..228085) 1 NC_004552.2 Similar to Chlamydia pneumoniae D-ala/gly permease daga_1 or cpn0536 or cp0216 SWALL:Q9Z816 (EMBL:AE001638) (449 aa) fasta scores: E(): 4.9e-142, 78.22% id in 450 aa; hypothetical protein 228085 3337618 CAB204 Chlamydophila abortus S26/3 hypothetical protein YP_219633.1 226736 R 218497 CDS YP_219634.1 62184849 3337619 complement(228151..228648) 1 NC_004552.2 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 228648 lspA 3337619 lspA Chlamydophila abortus S26/3 lipoprotein signal peptidase YP_219634.1 228151 R 218497 CDS YP_219635.1 62184850 3337620 complement(228654..229028) 1 NC_004552.2 Similar to Chlamydia pneumoniae DnaK suppressor DksA or cpn0534 SWALL:Q9Z818 (EMBL:AE001638) (124 aa) fasta scores: E(): 6e-41, 92.74% id in 124 aa, and to Chlamydia pneumoniae hypothetical protein Cp0218 cp0218 SWALL:Q9K2C0 (EMBL:AE002183) (132 aa) fasta scores: E(): 1.6e-40, 91.93% id in 124 aa; hypothetical protein 229028 3337620 CAB206 Chlamydophila abortus S26/3 hypothetical protein YP_219635.1 228654 R 218497 CDS YP_219636.1 62184851 3337754 complement(229059..229517) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0533/cp0219/cpj0533 cpn0533 or cp0219 or cpj0533 SWALL:Y533_CHLPN (SWALL:Q9Z819) (152 aa) fasta scores: E(): 8.5e-56, 98.02% id in 152 aa; transcriptional regulator NrdR 229517 nrdR 3337754 nrdR Chlamydophila abortus S26/3 transcriptional regulator NrdR YP_219636.1 229059 R 218497 CDS YP_219637.1 62184852 3338084 229735..230328 1 NC_004552.2 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 230328 ribC 3338084 ribC Chlamydophila abortus S26/3 riboflavin synthase subunit alpha YP_219637.1 229735 D 218497 CDS YP_219638.1 62184853 3337755 230341..231165 1 NC_004552.2 Similar to Chlamydia pneumoniae SAM dependent methyltransferase cpn0531 or cpj0531 or cp0221 SWALL:Q9Z821 (EMBL:AE001638) (275 aa) fasta scores: E(): 2.5e-78, 63.37% id in 273 aa, and to Chlamydia muridarum hypothetical protein Tc0684 tc0684 SWALL:Q9PJZ2 (EMBL:AE002337) (275 aa) fasta scores: E(): 4.3e-76, 65.09% id in 275 aa; hypothetical protein 231165 3337755 CAB209 Chlamydophila abortus S26/3 hypothetical protein YP_219638.1 230341 D 218497 CDS YP_219639.1 62184854 3337756 231153..231950 1 NC_004552.2 Similar to Chlamydia pneumoniae rRNA methylase Spou_1 or cpn0530 or cp0222 SWALL:Q9Z822 (EMBL:AE001638) (265 aa) fasta scores: E(): 7.5e-70, 62.73% id in 263 aa, and to Streptomyces viridochromogenes rRNA methyltransferase avirB SWALL:Q9F5K6 (EMBL:AF333038) (287 aa) fasta scores: E(): 3.9e-15, 29.6% id in 277 aa; hypothetical protein 231950 3337756 CAB210 Chlamydophila abortus S26/3 hypothetical protein YP_219639.1 231153 D 218497 CDS YP_219640.1 62184855 3337757 232181..233302 1 NC_004552.2 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 233302 lpxK 3337757 lpxK Chlamydophila abortus S26/3 tetraacyldisaccharide 4'-kinase YP_219640.1 232181 D 218497 CDS YP_219641.1 62184856 3337758 233306..234556 1 NC_004552.2 Similar to Chlamydia pneumoniae glutamate symport GltT or cpn0528 or cp0224 SWALL:Q9Z824 (EMBL:AE001637) (414 aa) fasta scores: E(): 3.2e-130, 83.01% id in 418 aa, and to Bacillus caldotenax proton/sodium-glutamate symport protein GltT SWALL:GLTT_BACCA (SWALL:P24944) (421 aa) fasta scores: E(): 4.9e-45, 34.8% id in 408 aa; symport protein 234556 3337758 CAB212 Chlamydophila abortus S26/3 symport protein YP_219641.1 233306 D 218497 CDS YP_219642.1 62184857 3337759 234569..235738 1 NC_004552.2 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 235738 3337759 CAB214 Chlamydophila abortus S26/3 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_219642.1 234569 D 218497 CDS YP_219643.1 62184858 3337760 235769..236758 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0679 tc0679 SWALL:Y679_CHLMU (SWALL:Q9PJZ7) (328 aa) fasta scores: E(): 3.4e-89, 67.17% id in 329 aa and Yersinia pestis arabinose 5-phosphate isomerase kdsd or ypo3577 or y0149 or yp3832 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 1.3e-32, 35.22% id in 318 aa; hypothetical protein 236758 3337760 CAB215 Chlamydophila abortus S26/3 hypothetical protein YP_219643.1 235769 D 218497 CDS YP_219644.1 62184859 3337761 complement(237176..237940) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct398 hypothetical protein cpn0525 or cpj0525 or cp0228 SWALL:Q9Z827 (EMBL:AE001637) (254 aa) fasta scores: E(): 2.5e-64, 86.61% id in 254 aa. CDS contains coiled coil region from residues 32-124.; hypothetical protein 237940 3337761 CAB216 Chlamydophila abortus S26/3 hypothetical protein YP_219644.1 237176 R 218497 CDS YP_219645.1 62184860 3338246 complement(238402..239472) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cp0229 cp0229 SWALL:Q9K2B8 (EMBL:AE002184) (359 aa) fasta scores: E(): 3.3e-29, 33.42% id in 362 aa. Only significant database matches are to predicted Chlamydiaceae proteins.; hypothetical protein 239472 3338246 CAB217 Chlamydophila abortus S26/3 hypothetical protein YP_219645.1 238402 R 218497 CDS YP_219646.1 62184861 3338247 complement(239539..239880) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00222 SWALL:Q824D0 (EMBL:AE016994) (123 aa) fasta scores: E(): 6.5e-19, 45.45% id in 110 aa. Note the differing N-termini. Also weakly similar to Chlamydia pneumoniae hypothetical protein cpn0523 cpn0523 or cpj0523 or cp0230 SWALL:Q9Z829 (EMBL:AE001637) (110 aa) fasta scores: E(): 0.021, 29.88% id in 87 aa; hypothetical protein 239880 3338247 CAB218 Chlamydophila abortus S26/3 hypothetical protein YP_219646.1 239539 R 218497 CDS YP_219647.1 62184862 3338248 complement(239947..240612) 1 NC_004552.2 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 240612 hemD 3338248 hemD Chlamydophila abortus S26/3 uroporphyrinogen-III synthase YP_219647.1 239947 R 218497 CDS YP_219648.1 62184863 3337735 240926..242419 1 NC_004552.2 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 242419 glyA 3337735 glyA Chlamydophila abortus S26/3 serine hydroxymethyltransferase YP_219648.1 240926 D 218497 CDS YP_219649.1 62184864 3337634 242439..243017 1 NC_004552.2 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 243017 clpP1 3337634 clpP1 Chlamydophila abortus S26/3 ATP-dependent Clp protease proteolytic subunit YP_219649.1 242439 D 218497 CDS YP_219650.1 62184865 3338249 242986..243768 1 NC_004552.2 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 243768 dapF 3338249 dapF Chlamydophila abortus S26/3 diaminopimelate epimerase YP_219650.1 242986 D 218497 CDS YP_219651.1 62184866 3338250 243900..244892 1 NC_004552.2 Similar to several proteins of unknown function including: Chlamydia trachomatis hypothetical protein Ct429 ct429 SWALL:Y429_CHLTR (SWALL:O84436) (329 aa) fasta scores: E(): 4.9e-102, 85.8% id in 331 aa, and to Chlamydia pneumoniae protein cpn0518/cp0235/cpj0518 cpn0518 or cp0235 or cpj0518 SWALL:Y518_CHLPN (SWALL:Q9Z834) (324 aa) fasta scores: E(): 9.4e-104, 88.48% id in 330 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 244892 3338250 CAB224 Chlamydophila abortus S26/3 hypothetical protein YP_219651.1 243900 D 218497 CDS YP_219652.1 62184867 3338251 complement(244897..245589) 1 NC_004552.2 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 245589 ubiE 3338251 ubiE Chlamydophila abortus S26/3 ubiquinone/menaquinone biosynthesis methyltransferase YP_219652.1 244897 R 218497 CDS YP_219653.1 62184868 3338252 complement(245570..246346) 1 NC_004552.2 Similar to several proteins of unknown function including: Chlamydia pneumoniae ct427 hypothetical protein cpn0514 SWALL:Q9Z838 (EMBL:AE001636) (264 aa) fasta scores: E(): 3.7e-57, 56.37% id in 259 aa and weakly similar to Streptomyces coelicolor hypothetical protein Sco4506 or scd35.13 SWALL:Q9L0T8 (EMBL:AL939120) (282 aa) fasta scores: E(): 2.4e-06, 23.66% id in 262 aa; hypothetical protein 246346 3338252 CAB226 Chlamydophila abortus S26/3 hypothetical protein YP_219653.1 245570 R 218497 CDS YP_219654.1 62184869 3338253 complement(246319..247431) 1 NC_004552.2 Similar to many proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0710 SWALL:Q9PJW6 (EMBL:AE002339) (369 aa) fasta scores: E(): 1.1e-107, 71.11% id in 367 aa, Aquifex aeolicus hypothetical protein Aq_648 SWALL:O66888 (EMBL:AE000700) (371 aa) fasta scores: E(): 8.1e-40, 37.17% id in 347 aa and to Bacillus halodurans hypothetical protein Bh3411 SWALL:Q9K7F1 (EMBL:AP001518) (364 aa) fasta scores: E(): 2.5e-35, 33.42% id in 356 aa; hypothetical protein 247431 3338253 CAB227 Chlamydophila abortus S26/3 hypothetical protein YP_219654.1 246319 R 218497 CDS YP_219655.1 62184870 3338254 complement(247651..249513) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct425 SWALL:Y425_CHLTR (SWALL:O84432) (621 aa) fasta scores: E(): 1.2e-194, 72.98% id in 622 aa and to Chlamydia muridarum hypothetical protein Tc0708 SWALL:Y708_CHLMU (SWALL:Q9PJW8) (621 aa) fasta scores: E(): 2.1e-194, 73.31% id in 622 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 249513 3338254 CAB228 Chlamydophila abortus S26/3 hypothetical protein YP_219655.1 247651 R 218497 CDS YP_219656.1 62184871 3338255 complement(249580..249948) 1 NC_004552.2 Weakly similar to Streptomyces coelicolor anti-sigma B factor antagonist RsbV or BldG or sco3549 or sch5.12C SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): 2.5e-05, 26.73% id in 101 aa and to Chlamydia pneumoniae sigma regulatory factor RsbV_1 or cpn0511 or cp0243 SWALL:Q9Z841 (EMBL:AE001636) (116 aa) fasta scores: E(): 1.2e-34, 81.03% id in 116 aa; regulatory protein 249948 3338255 CAB229 Chlamydophila abortus S26/3 regulatory protein YP_219656.1 249580 R 218497 CDS YP_219657.1 62184872 3338256 complement(250046..251170) 1 NC_004552.2 Similar to several proteins of undefined function including: Chlamydia pneumoniae CBS domain protein tlyc_2 or cpn0510 or cp0244 SWALL:Q9Z842 (EMBL:AE001636) (387 aa) fasta scores: E(): 4.2e-81, 61.24% id in 387 aa and to Chlamydia muridarum hemolysin, tc0706 SWALL:Q9PJX0 (EMBL:AE002339) (374 aa) fasta scores: E(): 6.5e-68, 53.74% id in 374 aa; hypothetical protein 251170 3338256 CAB230 Chlamydophila abortus S26/3 hypothetical protein YP_219657.1 250046 R 218497 CDS YP_219658.1 62184873 3337885 complement(251172..251648) 1 NC_004552.2 Similar to several including: Chlamydia pneumoniae predicted metalloenzyme cpn0509 or cpj0509 or cp0245 SWALL:Q9Z843 (EMBL:AE001636) (158 aa) fasta scores: E(): 5.2e-37, 61.78% id in 157 aa, and to Chlamydia muridarum hypothetical protein Tc0705 tc0705 SWALL:Q9PJX1 (EMBL:AE002339) (161 aa) fasta scores: E(): 1.7e-32, 62.66% id in 150 aa; hypothetical protein 251648 3337885 CAB231 Chlamydophila abortus S26/3 hypothetical protein YP_219658.1 251172 R 218497 CDS YP_219659.1 62184874 3337886 complement(251667..251828) 1 NC_004552.2 Doubtful CDS which is similar to Chlamydia pneumoniae ct421.2 hypothetical protein cpn0508 or cpj0508 or cp0246 SWALL:Q9Z844 (EMBL:AE001636) (53 aa) fasta scores: E(): 4e-18, 81.13% id in 53 aa, and to Chlamydia muridarum hypothetical protein Tc0704 tc0704 SWALL:Q9PJX2 (EMBL:AE002339) (53 aa) fasta scores: E(): 4.8e-18, 88.67% id in 53 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 251828 3337886 CAB232 Chlamydophila abortus S26/3 hypothetical protein YP_219659.1 251667 R 218497 CDS YP_219660.1 62184875 3337887 complement(251846..252007) 1 NC_004552.2 Doubtful CDS. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 252007 3337887 CAB233 Chlamydophila abortus S26/3 hypothetical protein YP_219660.1 251846 R 218497 CDS YP_219661.1 62184876 3337888 complement(252146..252790) 1 NC_004552.2 Similar to many including: Chlamydia muridarum hypothetical protein Tc0702 SWALL:Q9PJX4 (EMBL:AE002339) (215 aa) fasta scores: E(): 3.2e-62, 83.33% id in 210 aa, Fusobacterium nucleatum transporter fn1485 SWALL:Q8RDM7 (EMBL:AE010654) (223 aa) fasta scores: E(): 1.9e-15, 32.21% id in 208 aa and to Ralstonia solanacearum probable transmembrane protein rsc0465 or rs04432 SWALL:Q8Y271 (EMBL:AL646059) (243 aa) fasta scores: E(): 9.5e-15, 31.37% id in 204 aa; hypothetical protein 252790 3337888 CAB234 Chlamydophila abortus S26/3 hypothetical protein YP_219661.1 252146 R 218497 CDS YP_219662.1 62184877 3337889 complement(252971..253543) 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic glycosylases including: Chlamydia pneumoniae 3-methyladenine DNA glycosylase cpn0505 or cp0248 or cpj0505 SWALL:3MGH_CHLPN (SWALL:Q9Z847) (196 aa) fasta scores: E(): 5.4e-55, 69.35% id in 186 aa and to Rattus norvegicus DNA-3-methyladenine glycosylase mpG SWALL:3MG_RAT (SWALL:P23571) (317 aa) fasta scores: E(): 4.6e-14, 34.51% id in 197 aa; 3-methyladenine DNA glycosylase 253543 3337889 CAB235 Chlamydophila abortus S26/3 3-methyladenine DNA glycosylase YP_219662.1 252971 R 218497 CDS YP_219663.1 62184878 3337890 complement(253543..255591) 1 NC_004552.2 Weakly similar to Escherichia coli ribonuclease R Rnr or VacB or b4179 SWALL:RNR_ECOLI (SWALL:P21499) (813 aa) fasta scores: E(): 2.3e-41, 28.95% id in 701 aa and to Chlamydia muridarum ribonuclease R Rnr or VacB or tc0676 SWALL:RNR_CHLMU (SWALL:Q9PK00) (692 aa) fasta scores: E(): 5.7e-195, 71.64% id in 677 aa; ribonuclease 255591 3337890 CAB236 Chlamydophila abortus S26/3 ribonuclease YP_219663.1 253543 R 218497 CDS YP_219664.1 62184879 3337648 complement(255745..257724) 1 NC_004552.2 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 257724 dnaK 3337648 dnaK Chlamydophila abortus S26/3 molecular chaperone DnaK YP_219664.1 255745 R 218497 CDS YP_219665.1 62184880 3337983 complement(257750..258325) 1 NC_004552.2 Similar to Bacillus subtilis GrpE protein(hsp-70 cofactor) SWALL:GRPE_BACSU (SWALL:P15874) (186 aa) fasta scores: E(): 1.7e-11, 34.61% id in 156 aa, and to Chlamydia pneumoniae GrpE protein or cpn0502 or cp0252 SWALL:GRPE_CHLPN (SWALL:Q9Z849) (184 aa) fasta scores: E(): 1.1e-47, 76.66% id in 180 aa; heat shock protein GrpE 258325 grpE 3337983 grpE Chlamydophila abortus S26/3 heat shock protein GrpE YP_219665.1 257750 R 218497 CDS YP_219666.1 62184881 3337997 complement(258322..259482) 1 NC_004552.2 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 259482 hrcA 3337997 hrcA Chlamydophila abortus S26/3 heat-inducible transcription repressor YP_219666.1 258322 R 218497 CDS YP_219667.1 62184882 3338069 complement(259591..261324) 1 NC_004552.2 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 261324 proS 3338069 proS Chlamydophila abortus S26/3 prolyl-tRNA synthetase YP_219667.1 259591 R 218497 CDS YP_219668.1 62184883 3337891 261590..262786 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0671 SWALL:Y671_CHLMU (SWALL:Q9PK02) (379 aa) fasta scores: E(): 9.6e-11, 23.13% id in 402 aa and to Chlamydia pneumoniae hypothetical protein cpn0499/cp0255/cpj0499 cpn0499 or cp0255 or cpj0499 SWALL:Y499_CHLPN (SWALL:Q9Z852) (385 aa) fasta scores: E(): 6.5e-10, 25% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 262786 3337891 CAB241 Chlamydophila abortus S26/3 hypothetical protein YP_219668.1 261590 D 218497 CDS YP_219669.1 62184884 3337892 262893..263837 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cpn0498 or cpj0498 or cp0256 SWALL:Q9Z853 (EMBL:AE001634) (317 aa) fasta scores: E(): 3.6e-70, 54.14% id in 314 aa; lipoprotein 263837 3337892 CAB242 Chlamydophila abortus S26/3 lipoprotein YP_219669.1 262893 D 218497 CDS YP_219670.1 62184885 3337893 263842..264132 1 NC_004552.2 Similar to several proteins of unknown function e.g. Chlamydia trachomatis hypothetical protein Ct388 SWALL:O84393 (EMBL:AE001312) (115 aa) fasta scores: E(): 5.3e-17, 52.08% id in 96 aa and Pasteurella multocida hypothetical protein Pm1313 SWALL:Q9CLC6 (EMBL:AE006170) (99 aa) fasta scores: E(): 3.7e-05, 35.52% id in 76 aa; hypothetical protein 264132 3337893 CAB243 Chlamydophila abortus S26/3 hypothetical protein YP_219670.1 263842 D 218497 CDS YP_219671.1 62184886 3337894 complement(264117..265160) 1 NC_004552.2 Similar to several proteins of unknown function e.g. Chlamydia pneumoniae ct391 hypothetical protein cpn0496 SWALL:Q9Z855 (EMBL:AE001634) (340 aa) fasta scores: E(): 1.8e-84, 66.16% id in 331 aa, and to Corynebacterium glutamicum uncharacterized BCR cgl2251 SWALL:BAB99644 (EMBL:AP005281) (313 aa) fasta scores: E(): 1.5e-06, 22.65% id in 309 aa; hypothetical protein 265160 3337894 CAB244 Chlamydophila abortus S26/3 hypothetical protein YP_219671.1 264117 R 218497 CDS YP_219672.1 62184887 3337895 complement(265157..266353) 1 NC_004552.2 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 266353 3337895 CAB245 Chlamydophila abortus S26/3 L,L-diaminopimelate aminotransferase YP_219672.1 265157 R 218497 CDS YP_219673.1 62184888 3337896 266618..267382 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00250 SWALL:Q824A3 (EMBL:AE016994) (296 aa) fasta scores: E(): 9.8e-13, 41.4% id in 314 aa. Note the variation between these two protein products in the central region.; hypothetical protein 267382 3337896 CAB246 Chlamydophila abortus S26/3 hypothetical protein YP_219673.1 266618 D 218497 CDS YP_219674.1 62184889 3337897 267808..269052 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cp0263 SWALL:Q9K2B1 (EMBL:AE002186) (410 aa) fasta scores: E(): 1.9e-131, 74.69% id in 403 aa and Chlamydia muridarum hypothetical protein Tc0668 tc0668 SWALL:Q9PK05 (EMBL:AE002334) (408 aa) fasta scores: E(): 6.7e-123, 70.17% id in 409 aa; hypothetical protein 269052 3337897 CAB247 Chlamydophila abortus S26/3 hypothetical protein YP_219674.1 267808 D 218497 CDS YP_219675.1 62184890 3337898 complement(269053..271137) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0666 SWALL:Q9PK07 (EMBL:AE002334) (696 aa) fasta scores: E(): 1.8e-179, 61.85% id in 692 aa and to Chlamydia trachomatis hypothetical protein Ct387 SWALL:O84392 (EMBL:AE001312) (691 aa) fasta scores: E(): 1.5e-177, 61.12% id in 692 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 271137 3337898 CAB248 Chlamydophila abortus S26/3 hypothetical protein YP_219675.1 269053 R 218497 CDS YP_219676.1 62184891 3337899 271285..272154 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic proteins including: Chlamydia pneumoniae hypothetical protein cpn0489/cp0265/cpj0489 cpn0489 or cp0265 or cpj0489 SWALL:Y489_CHLPN (SWALL:Q9Z862) (290 aa) fasta scores: E(): 8.7e-104, 76.55% id in 290 aa and to Homo sapiens Myg1 protein c12orf10 SWALL:MYG1_HUMAN (SWALL:Q9HB07) (376 aa) fasta scores: E(): 2.4e-12, 32.18% id in 320 aa; hypothetical protein 272154 3337899 CAB249 Chlamydophila abortus S26/3 hypothetical protein YP_219676.1 271285 D 218497 CDS YP_219677.1 62184892 3337900 272151..272483 1 NC_004552.2 Similar to Fusobacterium nucleatum bis(5'-nucleosyl)-tetraphosphatase (EC 3.6.1.17) fn1873 SWALL:Q8RHW7 (EMBL:AE010489) (112 aa) fasta scores: E(): 2.6e-15, 47.7% id in 109 aa and to Campylobacter jejuni hit-family protein Cj0898 SWALL:Q9PP33 (EMBL:AL139076) (121 aa) fasta scores: E(): 5.1e-15, 49.05% id in 106 aa. Contains a histidine triad motif; hypothetical protein 272483 3337900 CAB250 Chlamydophila abortus S26/3 hypothetical protein YP_219677.1 272151 D 218497 CDS YP_219678.1 62184893 3337901 272528..274144 1 NC_004552.2 Similar to Chlamydia pneumoniae ct384 hypothetical protein cpn0487 or cpj0487 or cp0267 SWALL:Q9Z864 (EMBL:AE001634) (543 aa) fasta scores: E(): 2.6e-125, 58.17% id in 538 aa, and to Chlamydia muridarum hypothetical protein Tc0663 SWALL:Q9PK10 (EMBL:AE002334) (526 aa) fasta scores: E(): 6e-92, 48.68% id in 534 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 274144 3337901 CAB251 Chlamydophila abortus S26/3 hypothetical protein YP_219678.1 272528 D 218497 CDS YP_219679.1 62184894 3337902 274747..276081 1 NC_004552.2 Similar to Haemophilus influenzae sodium/pantothenate symporter PanF or hi0975 SWALL:PANF_HAEIN (SWALL:P44963) (484 aa) fasta scores: E(): 2.5e-06, 22.98% id in 483 aa and to Chlamydia pneumoniae sodium:solute symporter family protein Cp0268 SWALL:Q9K2A8 (EMBL:AE002186) (444 aa) fasta scores: E(): 1e-99, 64.67% id in 436 aa; sodium symporter 276081 3337902 CAB252 Chlamydophila abortus S26/3 sodium symporter YP_219679.1 274747 D 218497 CDS YP_219680.1 62184895 3337903 complement(276170..276370) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct382.1 hypothetical protein cpn0485 or cpj0485 or cp0269 SWALL:Q9Z866 (EMBL:AE001633) (64 aa) fasta scores: E(): 5.8e-12, 59.01% id in 61 aa and to Chlamydia trachomatis hypothetical protein hypothetical protein Ct382.1 SWALL:O84387 (EMBL:AE001311) (63 aa) fasta scores: E(): 7.9e-07, 41.66% id in 60 aa; hypothetical protein 276370 3337903 CAB253 Chlamydophila abortus S26/3 hypothetical protein YP_219680.1 276170 R 218497 CDS YP_219681.1 62184896 3337905 complement(277449..280766) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00261 SWALL:Q823Z2 (EMBL:AE016994) (1044 aa) fasta scores: E(): 1.2e-150, 61.39% id in 1106 aa.Note the product of this CDS is rich in the amino acids Leu, Thr, Pro and Gln and the variation between these two protein products in the N-terminus; hypothetical protein 280766 3337905 CAB255 Chlamydophila abortus S26/3 hypothetical protein YP_219681.1 277449 R 218497 CDS YP_219682.1 62184897 3337337 280899..281663 1 NC_004552.2 Similar to many aminoacid transprot proteins including: Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.8e-15, 30.63% id in 222 aa and to Chlamydia pneumoniae arginine periplasmic binding protein ArtJ or cpn0482 SWALL:Q9Z869 (EMBL:AE001633) (259 aa) fasta scores: E(): 1.2e-62, 62.05% id in 253 aa; membrane transport protein, solute binding component 281663 3337337 CAB256 Chlamydophila abortus S26/3 membrane transport protein, solute binding component YP_219682.1 280899 D 218497 CDS YP_219683.1 62184898 3337338 281837..282508 1 NC_004552.2 Similar to Chlamydia pneumoniae ct383 hypothetical protein cpn0480 or cpj0480 or cp0274 SWALL:Q9Z871 (EMBL:AE001633) (218 aa) fasta scores: E(): 8.9e-30, 39.81% id in 211 aa, and to Chlamydia muridarum hypothetical protein Tc0662 tc0662 SWALL:Q9PK11 (EMBL:AE002334) (246 aa) fasta scores: E(): 6.2e-22, 36.58% id in 205 aa; hypothetical protein 282508 3337338 CAB257 Chlamydophila abortus S26/3 hypothetical protein YP_219683.1 281837 D 218497 CDS YP_219684.1 62184899 3337339 282595..283416 1 NC_004552.2 Similar to Chlamydia pneumoniae metal dependent hydrolase Cpn0479 or cp0275 SWALL:Q9Z872 (EMBL:AE001633) (270 aa) fasta scores: E(): 1e-59, 55.97% id in 268 aa and to Escherichia coli PhnP protein phnp or b4092 SWALL:PHNP_ECOLI (SWALL:P16692) (252 aa) fasta scores: E(): 0.016, 24.71% id in 263 aa; hydrolase 283416 3337339 CAB258 Chlamydophila abortus S26/3 hydrolase YP_219684.1 282595 D 218497 CDS YP_219685.1 62184900 3337340 283420..284808 1 NC_004552.2 Similar to Escherichia coli GTP-binding protein HflX or b4173 SWALL:HFLX_ECOLI (SWALL:P25519) (426 aa) fasta scores: E(): 1.1e-40, 40.35% id in 399 aa and to Chlamydia muridarum GTP-binding protein tc0658 SWALL:Q9PK15 (EMBL:AE002334) (447 aa) fasta scores: E(): 1.6e-119, 74.72% id in 447 aa; GTP-binding protein 284808 3337340 CAB259 Chlamydophila abortus S26/3 GTP-binding protein YP_219685.1 283420 D 218497 CDS YP_219686.1 62184901 3337341 284918..286183 1 NC_004552.2 Similar to several including: Chlamydia pneumoniae hypothetical protein Cpn0477/cp0277/cpj0477 cpn0477 or cp0277 or cpj0477 SWALL:Y477_CHLPN (SWALL:Q9Z874) (421 aa) fasta scores: E(): 4.1e-119, 71.97% id in 421 aa, and to Thermoanaerobacter tengcongensis 2-methylthioadenine synthetase MiaB or tte0962 SWALL:Q8RB61 (EMBL:AE013061) (437 aa) fasta scores: E(): 5.5e-40, 34.82% id in 425 aa, and to Thermotoga maritima hypothetical protein Tm0830 SWALL:Y830_THEMA (SWALL:Q9WZT7) (434 aa) fasta scores: E(): 6.3e-40, 36.83% id in 429 aa; hypothetical protein 286183 3337341 CAB260 Chlamydophila abortus S26/3 hypothetical protein YP_219686.1 284918 D 218497 CDS YP_219687.1 62184902 3337342 286180..287178 1 NC_004552.2 Similar to Chlamydia pneumoniae ct865 hypothetical protein Cpn0476 or cpj0476 or cp0278 SWALL:Q9Z875 (EMBL:AE001632) (329 aa) fasta scores: E(): 8e-78, 59.45% id in 333 aa and to Chlamydia trachomatis hypothetical protein Ct865 SWALL:O84873 (EMBL:AE001359) (329 aa) fasta scores: E(): 2.9e-59, 50.74% id in 335 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 287178 3337342 CAB261 Chlamydophila abortus S26/3 hypothetical protein YP_219687.1 286180 D 218497 CDS YP_219688.1 62184903 3338056 287191..289356 1 NC_004552.2 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 289356 glgB 3338056 glgB Chlamydophila abortus S26/3 glycogen branching enzyme YP_219688.1 287191 D 218497 CDS YP_219689.1 62184904 3337980 289494..291275 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct365 SWALL:O84370 (EMBL:AE001309) (575 aa) fasta scores: E(): 2.7e-63, 39.96% id in 588 aa and to Chlamydia pneumoniae ct365 hypothetical protein cpn0474 or cpj0474 or cp0280 SWALL:Q9Z877 (EMBL:AE001632) (589 aa) fasta scores: E(): 5.3e-58, 50.08% id in 593 aa; hypothetical protein 291275 3337980 CAB263 Chlamydophila abortus S26/3 hypothetical protein YP_219689.1 289494 D 218497 CDS YP_219690.1 62184905 3337343 291461..293500 1 NC_004552.2 hypothetical protein 293500 3337343 CAB264 Chlamydophila abortus S26/3 hypothetical protein YP_219690.1 291461 D 218497 CDS YP_219691.1 62184906 3337677 complement(293548..296514) 1 NC_004552.2 Similar to many Chlamydial outer membrane proteins including: C.trachomatis probable outer membrane protein Pmpf precursor or ct870 SWALL:PMPF_CHLTR (SWALL:P38008) (1034 aa) fasta scores: E(): 1.7e-21, 28.99% id in 1083 aa and to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 3.2e-08, 24.13% id in 1036 aa; hypothetical protein 296514 pmp3E 3337677 pmp3E Chlamydophila abortus S26/3 hypothetical protein YP_219691.1 293548 R 218497 CDS YP_219692.1 62184907 3337678 complement(296536..299397) 1 NC_004552.2 Similar to Chlamydia pneumoniae probable outer membrane protein Pmp15 precursor pmp15 or cpn0466 or cp0286 SWALL:PM15_CHLPN (SWALL:Q9Z883) (938 aa) fasta scores: E(): 3.4e-116, 41.2% id in 932 aa, and to Chlamydia trachomatis probable outer membrane protein pmpe precursor pmpe or ct869 SWALL:PMPE_CHLTR (SWALL:O84877) (964 aa) fasta scores: E(): 1.5e-51, 31.74% id in 945 aa. Note the product of this CDS appears to lack a signal sequence.; hypothetical protein 299397 pmp4E 3337678 pmp4E Chlamydophila abortus S26/3 hypothetical protein YP_219692.1 296536 R 218497 CDS YP_219693.1 62184908 3338060 complement(299664..300743) 1 NC_004552.2 Weakly similar to the C-terminus of the products of many Chlamydia outer membrane proteins including: Chlamydia muridarum PmpE precursor or tc0261 SWALL:PMPE_CHLMU (SWALL:Q9PL47) (976 aa) fasta scores: E(): 1.7e-24, 28.98% id in 314 aa Chlamydia pneumoniae probable outer membrane protein Pmp18 precursor or cpn0471 or cp0283 SWALL:PM18_CHLPN (SWALL:Q9Z880) (946 aa) fasta scores: E(): 2.7e-22, 27.81% id in 338 aa. Note that although a translational start site has been assigned this CDS may be a degenerate gene fragment.; hypothetical protein 300743 pmp5E 3338060 pmp5E Chlamydophila abortus S26/3 hypothetical protein YP_219693.1 299664 R 218497 CDS YP_219694.1 62184909 3338061 complement(301197..304139) 1 NC_004552.2 Similar to many Chlamydia outer membrane proteins including: Chlamydia pneumoniae probable outer membrane protein Pmp14 precursor or cpn0454 or cp0298 SWALL:PM14_CHLPN (SWALL:Q9Z895) (978 aa) fasta scores: E(): 9.5e-179, 48.07% id in 988 aa and to Chlamydia trachomatis probable outer membrane protein PmpH precursor or ct872 SWALL:PMPH_CHLTR (SWALL:O84880) (1016 aa) fasta scores: E(): 8.9e-113, 38.29% id in 1029 aa; hypothetical protein 304139 pmp6H 3338061 pmp6H Chlamydophila abortus S26/3 hypothetical protein YP_219694.1 301197 R 218497 CDS YP_219695.1 62184910 3338062 complement(304165..307239) 1 NC_004552.2 Similar to Chlamydia trachomatis probable outer membrane protein PmpG precursor or ct871 SWALL:PMPG_CHLTR (SWALL:O84879) (1013 aa) fasta scores: E(): 7.8e-72, 38.95% id in 1068 aa and to Chlamydia pneumoniae probable outer membrane protein Pmp13 precursor or omp14 or cpn0453 or cp0299 SWALL:PM13_CHLPN (SWALL:Q9Z896) (973 aa) fasta scores: E(): 2.6e-63, 37.57% id in 1046 aa; hypothetical protein 307239 pmp7G 3338062 pmp7G Chlamydophila abortus S26/3 hypothetical protein YP_219695.1 304165 R 218497 CDS YP_219696.1 62184911 3337666 complement(313284..315806) 1 NC_004552.2 Similar to many Chlamydophila outer membrane proteins including: C. abortus Pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 4.5e-85, 34.81% id in 876 aa, and to Chlamydia pneumoniae probable outer membrane protein pmp11 precursor pmp11 or omp4 or cpn0449 or cp0302 SWALL:PM11_CHLPN (SWALL:O86164) (928 aa) fasta scores: E(): 1.4e-70, 33.08% id in 949 aa; hypothetical protein 315806 pmp10G 3337666 pmp10G Chlamydophila abortus S26/3 hypothetical protein YP_219696.1 313284 R 218497 CDS YP_219697.1 62184912 3337667 complement(315962..318511) 1 NC_004552.2 Similar to many Chlamydophila outer membrane proteins including: Chlamydia pneumoniae probable outer membrane protein Pmp2 precursor or omp7 or cpn0013 or cp0761 SWALL:PMP2_CHLPN (SWALL:Q9Z3A1) (841 aa) fasta scores: E(): 1e-76, 33.87% id in 865 aa, and to Chlamydophila abortus pomp91a SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 2.8e-71, 32.65% id in 882 aa; hypothetical protein 318511 pmp11G 3337667 pmp11G Chlamydophila abortus S26/3 hypothetical protein YP_219697.1 315962 R 218497 CDS YP_219698.1 62184913 3337669 complement(321502..324045) 1 NC_004552.2 Previously sequenced as:Chlamydophila abortus Pomp91A SWALL:P71132 (EMBL:U65942) (847 aa) fasta scores: E(): 0, 100% id in 847 aa. Also similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 1.2e-116, 41.89% id in 962 aa. Note this CDS contains a homopolymeric run of 10 x G residues which may be important for phase variable expression of its protein product; hypothetical protein 324045 pmp13G 3337669 pmp13G Chlamydophila abortus S26/3 hypothetical protein YP_219698.1 321502 R 218497 CDS YP_219699.1 62184914 3337670 complement(324168..326948) 1 NC_004552.2 Previously sequenced as: Chlamydophila abortus outer membrane protein SWALL:P71135 (EMBL:U72499) (926 aa) fasta scores: E(): 0, 99.89% id in 926 aa. Also highly similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 9.4e-144, 46.84% id in 952 aa; hypothetical protein 326948 pmp14G 3337670 pmp14G Chlamydophila abortus S26/3 hypothetical protein YP_219699.1 324168 R 218497 CDS YP_219700.1 62184915 3337671 complement(327092..331228) 1 NC_004552.2 Similar to Chlamydia pneumoniae probable outer membrane protein pmp6 precursor pmp6 or cpn0444 or cp0309 SWALL:PMP6_CHLPN (SWALL:Q9Z899) (1276 aa) fasta scores: E(): 2.8e-57, 30.65% id in 1450aa. Also highly similar to Chlamydophila abortus outer membrane protein (gene fragment) SWALL:P71134 (EMBL:U72499) (649 aa) fasta scores: E(): 1.7e-204, 99.84% id in 649 aa; hypothetical protein 331228 pmp15G 3337671 pmp15G Chlamydophila abortus S26/3 hypothetical protein YP_219700.1 327092 R 218497 CDS YP_219701.1 62184916 3337345 complement(331423..331698) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct001 hypothetical protein Cpn0001 or cpj0001 or cp0775 SWALL:Q9Z9G9 (EMBL:AE001585) (93 aa) fasta scores: E(): 8.4e-20, 65.95% id in 94 aa, and to Chlamydia trachomatis hypothetical protein Ct001 ct001 SWALL:O84004 (EMBL:AE001275) (90 aa) fasta scores: E(): 9.8e-12, 50% id in 90 aa; hypothetical protein 331698 3337345 CAB284 Chlamydophila abortus S26/3 hypothetical protein YP_219701.1 331423 R 218497 CDS YP_219702.1 62184917 3338054 331899..332201 1 NC_004552.2 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 332201 gatC 3338054 gatC Chlamydophila abortus S26/3 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_219702.1 331899 D 218497 CDS YP_219703.1 62184918 3338052 332223..333698 1 NC_004552.2 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 333698 gatA 3338052 gatA Chlamydophila abortus S26/3 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_219703.1 332223 D 218497 CDS YP_219704.1 62184919 3338053 333698..335161 1 NC_004552.2 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 335161 gatB 3338053 gatB Chlamydophila abortus S26/3 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_219704.1 333698 D 218497 CDS YP_219705.1 62184920 3337346 complement(335282..336508) 1 NC_004552.2 Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0443/cp0310/cpj0443 cpn0443 or cp0310 or cpj0443 SWALL:Y443_CHLPN (SWALL:Q9Z8A0) (417 aa) fasta scores: E(): 1.3e-36, 36.36% id in 374 aa; hypothetical protein 336508 3337346 CAB288 Chlamydophila abortus S26/3 hypothetical protein YP_219705.1 335282 R 218497 CDS YP_219706.1 62184921 3337347 complement(336681..337244) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0274 SWALL:Y274_CHLMU (SWALL:Q9PL34) (193 aa) fasta scores: E(): 1.1e-10, 29.54% id in 176 aa and to Chlamydia trachomatis hypothetical protein Ct006 ct006 SWALL:Y006_CHLTR (SWALL:O84009) (189 aa) fasta scores: E(): 1.8e-08, 30.05% id in 173 aa; hypothetical protein 337244 3337347 CAB289 Chlamydophila abortus S26/3 hypothetical protein YP_219706.1 336681 R 218497 CDS YP_219707.1 62184922 3337348 complement(337405..338355) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0441/cp0312/cpj0441 cpn0441 or cp0312 or cpj0441 SWALL:Y441_CHLPN (SWALL:Q9Z8A2) (316 aa) fasta scores: E(): 1.3e-93, 67.82% id in 317 aa, and to Chlamydia muridarum hypothetical protein Tc0275 tc0275 SWALL:Y275_CHLMU (SWALL:Q9PL33) (316 aa) fasta scores: E(): 1.4e-79, 58.67% id in 317 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 338355 3337348 CAB290 Chlamydophila abortus S26/3 hypothetical protein YP_219707.1 337405 R 218497 CDS YP_219708.1 62184923 3337474 complement(338573..339475) 1 NC_004552.2 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 339475 rnhC 3337474 rnhC Chlamydophila abortus S26/3 ribonuclease HIII YP_219708.1 338573 R 218497 CDS YP_219709.1 62184924 3337349 339749..340180 1 NC_004552.2 Similar to Chlamydia pneumoniae HTH transcriptional regulator YfgA or cpn1069 or cp0781 SWALL:Q9Z6J0 (EMBL:AE001687) (143 aa) fasta scores: E(): 8.6e-46, 82.51% id in 143 aa, and to Chlamydia trachomatis HTH transcriptional regulator YfgA or ct009 SWALL:O84012 (EMBL:AE001275) (143 aa) fasta scores: E(): 7.3e-40, 73.42% id in 143 aa; hypothetical protein 340180 3337349 CAB292 Chlamydophila abortus S26/3 hypothetical protein YP_219709.1 339749 D 218497 CDS YP_219710.1 62184925 3337350 complement(340250..341578) 1 NC_004552.2 Weakly similar to Chlamydia pneumoniae hypothetical protein cpn1070 or cpj1070 or cp0780 SWALL:Q9Z6I9 (EMBL:AE001687) (456 aa) fasta scores: E(): 2.4e-11, 27.35% id in 435 aa; hypothetical protein 341578 3337350 CAB293 Chlamydophila abortus S26/3 hypothetical protein YP_219710.1 340250 R 218497 CDS YP_219711.1 62184926 3337351 complement(341877..343205) 1 NC_004552.2 hypothetical protein 343205 3337351 CAB294 Chlamydophila abortus S26/3 hypothetical protein YP_219711.1 341877 R 218497 CDS YP_219712.1 62184927 3337352 complement(343521..343745) 1 NC_004552.2 doubtful CDS with no significant database hits; hypothetical protein 343745 3337352 CAB295 Chlamydophila abortus S26/3 hypothetical protein YP_219712.1 343521 R 218497 CDS YP_219713.1 62184928 3337353 343864..344730 1 NC_004552.2 Similar to Chlamydia pneumoniae outer membrane protein cpn1073/cp0776/cpj1073 precursor cpn1073 or cp0776 or cpj1073 SWALL:OMPZ_CHLPN (SWALL:Q9Z6I6) (274 aa) fasta scores: E(): 4.3e-07, 24.43% id in 221 aa and Chlamydia pneumoniae hypothetical protein cpn1072 or cpj1072 or cp0777 SWALL:Q9Z6I7 (EMBL:AE001687) (289 aa) fasta scores: E(): 9.6e-40, 41.75% id in 273 aa; hypothetical protein 344730 3337353 CAB296 Chlamydophila abortus S26/3 hypothetical protein YP_219713.1 343864 D 218497 CDS YP_219714.1 62184929 3337354 344865..345734 1 NC_004552.2 Weakly similar to Chlamydia pneumoniae outer membrane protein cpn1073/cp0776/cpj1073 precursor cpn1073 or cp0776 or cpj1073 SWALL:OMPZ_CHLPN (SWALL:Q9Z6I6) (274 aa) fasta scores: E(): 1.7e-38, 40.36% id in 270 aa, and to Chlamydia pneumoniae hypothetical protein cpn1072 or cpj1072 or cp0777 SWALL:Q9Z6I7 (EMBL:AE001687) (289 aa) fasta scores: E(): 2.5e-07, 28.17% id in 252 aa; hypothetical protein 345734 3337354 CAB297 Chlamydophila abortus S26/3 hypothetical protein YP_219714.1 344865 D 218497 CDS YP_219715.1 62184930 3337355 346225..348327 1 NC_004552.2 Similar to many proteins of undefined function including: Chlamydia pneumoniae ct356 hypothetical protein cpn1057 or cpj1057 or cp0793 SWALL:Q9Z6K2 (EMBL:AE001686) (700 aa) fasta scores: E(): 3.7e-200, 65.23% id in 699 aa, and to Aquifex aeolicus hypothetical protein Aq_2146 aq_2146 SWALL:O67902 (EMBL:AE000775) (692 aa) fasta scores: E(): 9.8e-69, 32.45% id in 684 aa, and to Methanosarcina mazei conserved protein mm0619 SWALL:AAM30315 (EMBL:AE013287) (700 aa) fasta scores: E(): 2e-65, 32.69% id in 682 aa; hypothetical protein 348327 3337355 CAB298 Chlamydophila abortus S26/3 hypothetical protein YP_219715.1 346225 D 218497 CDS YP_219716.1 62184931 3337356 348439..349524 1 NC_004552.2 Similar to Chlamydia pneumoniae protein precursor cpn1058 or cp0792 or cpj1058 SWALL:YA58_CHLPN (SWALL:Q9Z6K1) (363 aa) fasta scores: E(): 2.7e-91, 64.24% id in 358 aa, and to Clostridium perfringens hypothetical protein Cpe0268 cpe0268 SWALL:Q8XNR4 (EMBL:AP003186) (248 aa) fasta scores: E(): 8.5, 19.13% id in 230 aa; hypothetical protein 349524 3337356 CAB299 Chlamydophila abortus S26/3 hypothetical protein YP_219716.1 348439 D 218497 CDS YP_219717.1 62184932 3337437 349533..350369 1 NC_004552.2 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 350369 ksgA 3337437 ksgA Chlamydophila abortus S26/3 dimethyladenosine transferase YP_219717.1 349533 D 218497 CDS YP_219718.1 62184933 3337657 complement(350828..352762) 1 NC_004552.2 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 352762 dxs 3337657 dxs Chlamydophila abortus S26/3 1-deoxy-D-xylulose-5-phosphate synthase YP_219718.1 350828 R 218497 CDS YP_219719.1 62184934 3337357 complement(352759..353013) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct330 hypothetical protein cpn1061 or cp0789 SWALL:Q9Z6J8 (EMBL:AE001686) (85 aa) fasta scores: E(): 1.3e-09, 50% id in 74 aa and Chlamydia pneumoniae ct330 hypothetical protein cpj1061 SWALL:Q9JS71 (EMBL:AP002548) (85 aa) fasta scores: E(): 5.7e-09, 48.64% id in 74 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 353013 3337357 CAB302 Chlamydophila abortus S26/3 hypothetical protein YP_219719.1 352759 R 218497 CDS YP_219720.1 62184935 3338244 complement(353028..353255) 1 NC_004552.2 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 353255 xseB 3338244 xseB Chlamydophila abortus S26/3 exodeoxyribonuclease VII small subunit YP_219720.1 353028 R 218497 CDS YP_219721.1 62184936 3338243 complement(353259..354926) 1 NC_004552.2 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 354926 xseA 3338243 xseA Chlamydophila abortus S26/3 exodeoxyribonuclease VII large subunit YP_219721.1 353259 R 218497 CDS YP_219722.1 62184937 3338220 355057..355821 1 NC_004552.2 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 355821 tpiA 3338220 tpiA Chlamydophila abortus S26/3 triosephosphate isomerase YP_219722.1 355057 D 218497 CDS YP_219723.1 62184938 3337358 356095..356409 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0631 SWALL:Q9PK42 (EMBL:AE002331) (102 aa) fasta scores: E(): 2.4e-25, 71.84% id in 103 aa and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein-export membrane protein SecG or b3175 or c3931 or z4537 or ecs4054 SWALL:SECG_ECOLI (SWALL:P33582) (110 aa) fasta scores: E(): 0.0029, 32.85% id in 70 aa; preprotein translocase subunit SecG 356409 secG 3337358 secG Chlamydophila abortus S26/3 preprotein translocase subunit SecG YP_219723.1 356095 D 218497 CDS YP_219724.1 62184939 3337642 356666..357220 1 NC_004552.2 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 357220 def 3337642 def Chlamydophila abortus S26/3 peptide deformylase YP_219724.1 356666 D 218497 CDS YP_219725.1 62184940 3337359 complement(357297..359393) 1 NC_004552.2 Similar to Chlamydia pneumoniae OMP protein cpn0020 or cpj0020 SWALL:Q9Z9G1 (EMBL:AE001587) (695 aa) fasta scores: E(): 0, 71.71% id in 693 aa; lipoprotein 359393 3337359 CAB308 Chlamydophila abortus S26/3 lipoprotein YP_219725.1 357297 R 218497 CDS YP_219726.1 62184941 3337360 complement(359404..361110) 1 NC_004552.2 Similar to Chlamydia pneumoniae OMP protein cpn0021 or cpj0021 or cp0755 SWALL:Q9Z9G0 (EMBL:AE001587) (568 aa) fasta scores: E(): 4.8e-144, 68.01% id in 569 aa and to Chlamydia trachomatis hypothetical protein Ct350 SWALL:O84354 (EMBL:AE001308) (566 aa) fasta scores: E(): 2.8e-115, 56.46% id in 572 aa; hypothetical protein 361110 3337360 CAB309 Chlamydophila abortus S26/3 hypothetical protein YP_219726.1 359404 R 218497 CDS YP_219727.1 62184942 3337361 complement(361092..361682) 1 NC_004552.2 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 361682 maf 3337361 maf Chlamydophila abortus S26/3 Maf-like protein YP_219727.1 361092 R 218497 CDS YP_219728.1 62184943 3337362 complement(361724..363325) 1 NC_004552.2 Similar to many proposed ABC transporter, ATP-binding proteins including: Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical YbiT or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1e-70, 42.91% id in 529 aa and Leptospira interrogans ABC transporter, ATP-binding protein La3684 SWALL:Q8F013 (EMBL:AE011523) (544 aa) fasta scores: E(): 4.9e-71, 44.98% id in 518 aa. Note the alternative translational start site at codon 5; ABC transporter, ATP-binding component 363325 3337362 CAB311 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219728.1 361724 R 218497 CDS YP_219729.1 62184944 3337363 complement(363366..364304) 1 NC_004552.2 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 364304 xerC 3337363 xerC Chlamydophila abortus S26/3 site-specific tyrosine recombinase XerC YP_219729.1 363366 R 218497 CDS YP_219730.1 62184945 3337364 complement(364349..365269) 1 NC_004552.2 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 365269 3337364 CAB313 Chlamydophila abortus S26/3 ribonuclease Z YP_219730.1 364349 R 218497 CDS YP_219731.1 62184946 3337365 complement(365372..366043) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00318 SWALL:Q823T7 (EMBL:AE016995) (233 aa) fasta scores: E(): 4.9e-35, 53.5% id in 228 aa. Note the high incidence of the residue Serine in the C-terminus of the predicted product of this CDS.; serine rich exported protein 366043 3337365 CAB314 Chlamydophila abortus S26/3 serine rich exported protein YP_219731.1 365372 R 218497 CDS YP_219732.1 62184947 3337366 complement(366183..368639) 1 NC_004552.2 Similar to many Prokaryotic and Eukaryotic serine proteases including: Chlamydia pneumoniae ATP-dependent protease Lon or cpn0027 or cp0749 SWALL:LON_CHLPN (SWALL:Q9Z9F4) (819 aa) fasta scores: E(): 0, 91.44% id in 818 aa, Homo sapiens Lon protease homolog, mitochondrial precursor prss15 SWALL:LONM_HUMAN (SWALL:P36776) (959 aa) fasta scores: E(): 4.8e-114, 45.43% id in 843 aa and Bacillus subtilis ATP-dependent protease LonA or loN SWALL:LON1_BACSU (SWALL:P37945) (774 aa) fasta scores: E(): 2.5e-93, 39.43% id in 781 aa; serine protease 368639 3337366 CAB315 Chlamydophila abortus S26/3 serine protease YP_219732.1 366183 R 218497 CDS YP_219733.1 62184948 3337367 369284..369925 1 NC_004552.2 Weakly similar in the N-terminal region to several including: to Neisseria meningitidis hypothetical protein Nma0585 SWALL:Q9JW17 (EMBL:AL162753) (225 aa) fasta scores: E(): 0.027, 28.57% id in 161 aa, and to Escherichia coli hypothetical protease YeaZ or b1807 SWALL:YEAZ_ECOLI (SWALL:P76256) (231 aa) fasta scores: E(): 0.12, 28.14% id in 135 aa; hypothetical protein 369925 3337367 CAB316 Chlamydophila abortus S26/3 hypothetical protein YP_219733.1 369284 D 218497 CDS YP_219734.1 62184949 3338122 370125..370301 1 NC_004552.2 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 370301 rpsU 3338122 rpsU Chlamydophila abortus S26/3 30S ribosomal protein S21 YP_219734.1 370125 D 218497 CDS YP_219735.1 62184950 3337647 370331..371506 1 NC_004552.2 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 371506 dnaJ 3337647 dnaJ Chlamydophila abortus S26/3 molecular chaperone DnaJ YP_219735.1 370331 D 218497 CDS YP_219736.1 62184951 3337368 371541..373577 1 NC_004552.2 Similar to over the whole range to Chlamydophila caviae 2-oxoisovalerate dehydrogenase, e1 component, alpha and beta subunit pdha/pdhb or cca00324 SWALL:Q823T1 (EMBL:AE016995) (678 aa) fasta scores: E(): 0, 92.77% id in 678 aa. Also similar in parts to many including Bacillus subtilis 2-oxoisovalerate dehydrogenase beta subunit SWALL:ODBB_BACSU (SWALL:P37941) (327 aa) fasta scores: E(): 1.2e-53, 47.07% id in 325 aa; oxidoreductase 373577 3337368 CAB319 Chlamydophila abortus S26/3 oxidoreductase YP_219736.1 371541 D 218497 CDS YP_219737.1 62184952 3338125 complement(374848..376146) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct339 hypothetical protein cpj0035 or cp0741 SWALL:Q9JS51 (EMBL:AE002232) (487 aa) fasta scores: E(): 9.4e-81, 49.88% id in 431 aa. Also similar in the C-terminus to several competence proteins e.g. Chlorobium tepidum ComEC/rec2 family protein ct1367 SWALL:AAM72596 (EMBL:AE012895) (729 aa) fasta scores: E(): 8.7e-05, 24.01% id in 254 aa; hypothetical protein 376146 3338125 CAB322 Chlamydophila abortus S26/3 hypothetical protein YP_219737.1 374848 R 218497 CDS YP_219738.1 62184953 3338126 376116..376907 1 NC_004552.2 Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 376907 3338126 CAB323 Chlamydophila abortus S26/3 hypothetical protein YP_219738.1 376116 D 218497 CDS YP_219739.1 62184954 3338127 376900..377241 1 NC_004552.2 Similar to Chlamydia pneumoniae phosphocarrier protein Hpr PtsH or cpn0037 or cp0738 SWALL:PTHP_CHLPN (SWALL:Q9Z9E4) (108 aa) fasta scores: E(): 4.2e-24, 66.66% id in 99 aa, and to Bacillus subtilis phosphocarrier protein Hpr PtsH SWALL:PTHP_BACSU (SWALL:P08877) (87 aa) fasta scores: E(): 3.1e-06, 39.5% id in 81 aa; phosphotransferase system, phosphocarrier protein 377241 3338127 CAB324 Chlamydophila abortus S26/3 phosphotransferase system, phosphocarrier protein YP_219739.1 376900 D 218497 CDS YP_219740.1 62184955 3338128 377242..378942 1 NC_004552.2 Similar to Mycoplasma genitalium phosphoenolpyruvate-protein phosphotransferase PtsI or mg429 SWALL:PT1_MYCGE (SWALL:P47668) (572 aa) fasta scores: E(): 2.1e-25, 28.47% id in 569 aa and to Streptomyces coelicolor phosphoenolpyruvate-protein phosphotransferase PtsI or sco1391 or sc1a8a.11 SWALL:Q9KZP1 (EMBL:AL939108) (556 aa) fasta scores: E(): 4.4e-37, 29.18% id in 562 aa; phosphoenolpyruvate-protein phosphotransferase 378942 3338128 CAB325 Chlamydophila abortus S26/3 phosphoenolpyruvate-protein phosphotransferase YP_219740.1 377242 D 218497 CDS YP_219741.1 62184956 3338129 complement(378939..379229) 1 NC_004552.2 Similar to many proteins of undefined function including: Chlamydia pneumoniae upf0233 hypothetical protein cpn0039/cp0376/cpj0039 cpn0039 or cp0736 or cpj0039 SWALL:Y039_CHLPN (SWALL:Q9Z9E2) (96 aa) fasta scores: E(): 1e-29, 83.33% id in 96 aa, and to Rhizobium loti hypothetical upf0133 protein Mlr5504 mlr5504 SWALL:YJA4_RHILO (SWALL:Q98BM7) (107 aa) fasta scores: E(): 4.1e-05, 30.33% id in 89 aa; hypothetical protein 379229 3338129 CAB326 Chlamydophila abortus S26/3 hypothetical protein YP_219741.1 378939 R 218497 CDS YP_219742.1 62184957 3337651 complement(379234..380565) 1 NC_004552.2 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 380565 dnaX 3337651 dnaX Chlamydophila abortus S26/3 DNA polymerase III subunits gamma and tau YP_219742.1 379234 R 218497 CDS YP_219743.1 62184958 3338130 381064..383160 1 NC_004552.2 Similar to many proteins of undefined function including: Chlamydia pneumoniae conserved hypothetical inner membrane protein YqfF SWALL:Q9Z9D3 (EMBL:AE001590) (705 aa) fasta scores: E(): 2.3e-149, 55.54% id in 695 aa and Thermoanaerobacter tengcongensis predicted membrane-associated HD superfamily hydrolase tte0971 SWALL:Q8RB53 (EMBL:AE013062) (687 aa) fasta scores: E(): 3.1e-38, 28.03% id in 617 aa; hypothetical protein 383160 3338130 CAB328 Chlamydophila abortus S26/3 hypothetical protein YP_219743.1 381064 D 218497 CDS YP_219744.1 62184959 3338131 complement(383143..383634) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cpn0049 SWALL:Q9Z9D2 (EMBL:AE001590) (160 aa) fasta scores: E(): 9.8e-05, 30.43% id in 138 aa; hypothetical protein 383634 3338131 CAB329 Chlamydophila abortus S26/3 hypothetical protein YP_219744.1 383143 R 218497 CDS YP_219745.1 62184960 3338132 complement(383995..384426) 1 NC_004552.2 Note, weakly similar to CAB331; hypothetical protein 384426 3338132 CAB330 Chlamydophila abortus S26/3 hypothetical protein YP_219745.1 383995 R 218497 CDS YP_219746.1 62184961 3338133 complement(384587..384988) 1 NC_004552.2 Note weakly similar to CAB330; hypothetical protein 384988 3338133 CAB331 Chlamydophila abortus S26/3 hypothetical protein YP_219746.1 384587 R 218497 CDS YP_219747.1 62184962 3338134 complement(385073..385822) 1 NC_004552.2 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 385822 3338134 CAB332 Chlamydophila abortus S26/3 porphobilinogen deaminase YP_219747.1 385073 R 218497 CDS YP_219748.1 62184963 3338073 complement(385800..387167) 1 NC_004552.2 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 387167 radA 3338073 radA Chlamydophila abortus S26/3 DNA repair protein RadA YP_219748.1 385800 R 218497 CDS YP_219749.1 62184964 3338091 complement(387127..387840) 1 NC_004552.2 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 387840 rnc 3338091 rnc Chlamydophila abortus S26/3 ribonuclease III YP_219749.1 387127 R 218497 CDS YP_219750.1 62184965 3338135 387960..388424 1 NC_004552.2 Similar to Chlamydia pneumoniae ct296 hypothetical protein cpn0055 or cpj0055 or cp0720 SWALL:Q9Z9C6 (EMBL:AE001590) (154 aa) fasta scores: E(): 7.6e-39, 62.09% id in 153 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 388424 3338135 CAB335 Chlamydophila abortus S26/3 hypothetical protein YP_219750.1 387960 D 218497 CDS YP_219751.1 62184966 3338136 388519..390324 1 NC_004552.2 Similar to Mycoplasma pirum phosphomannomutase ManB SWALL:MANB_MYCPI (SWALL:P47723) (544 aa) fasta scores: E(): 1e-39, 31.31% id in 546 aa and to Chlamydia pneumoniae phosphomannomutase MrsA or cpn0056 SWALL:Q9Z9C5 (EMBL:AE001591) (598 aa) fasta scores: E(): 2.7e-148, 64.2% id in 595 aa, and to Streptococcus thermophilus phosphoglucomutase PgmA SWALL:Q9K560 (EMBL:AJ243290) (572 aa) fasta scores: E(): 2e-60, 37.2% id in 559 aa; phosphomannomutase 390324 3338136 CAB336 Chlamydophila abortus S26/3 phosphomannomutase YP_219751.1 388519 D 218497 CDS YP_219752.1 62184967 3338137 390444..391067 1 NC_004552.2 Similar to many Prokaryotic and Eukaryotic dismutases including: Chlamydia pneumoniae superoxide dismutase [mn] SodA or cpn0057 or cp0718 SWALL:SODM_CHLPN (SWALL:Q9Z9C4) (207 aa) fasta scores: E(): 2.7e-67, 78.81% id in 203 aa and to Drosophila melanogaster superoxide dismutase [mn], mitochondrial precursor sod2 or cg8905 SWALL:SODM_DROME (SWALL:Q00637) (217 aa) fasta scores: E(): 7e-43, 55% id in 200 aa; superoxide dismutase 391067 3338137 CAB337 Chlamydophila abortus S26/3 superoxide dismutase YP_219752.1 390444 D 218497 CDS YP_219753.1 62184968 3338138 391148..392074 1 NC_004552.2 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 392074 3338138 CAB338 Chlamydophila abortus S26/3 acetyl-CoA carboxylase subunit beta YP_219753.1 391148 D 218497 CDS YP_219754.1 62184969 3337655 392117..392560 1 NC_004552.2 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 392560 dut 3337655 dut Chlamydophila abortus S26/3 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_219754.1 392117 D 218497 CDS YP_219755.1 62184970 3338139 392562..393038 1 NC_004552.2 Similar to many phosphotransferase system proteins including: Chlamydia muridarum PTS system, IIa component tc0564 SWALL:Q9PKA3 (EMBL:AE002324) (165 aa) fasta scores: E(): 2.2e-35, 61.93% id in 155 aa, and to Thermoanaerobacter tengcongensis phosphotransferase system mannitol/fructose-specific iia domain ptsn3 or tte2586 SWALL:Q8R738 (EMBL:AE013199) (151 aa) fasta scores: E(): 5.5e-11, 33.33% id in 141 aa; PTS system, IIA component 393038 3338139 CAB339 Chlamydophila abortus S26/3 PTS system, IIA component YP_219755.1 392562 D 218497 CDS YP_219756.1 62184971 3338140 393043..393723 1 NC_004552.2 Similar to Chlamydia pneumoniae pts IIa protein with hth DNA-binding domain ptsn_2 or cp0714 SWALL:Q9JS03 (EMBL:AE002230) (225 aa) fasta scores: E(): 1e-66, 75.77% id in 227 aa, and to Escherichia coli, and Shigella flexneri nitrogen regulatory IIa protein PtsN or rpop or b3204 or sf3244 or s3462 SWALL:PTSN_ECOLI (SWALL:P31222) (163 aa) fasta scores: E(): 2.5e-06, 34.92% id in 126 aa; PTS system, IIA component 393723 3338140 CAB340 Chlamydophila abortus S26/3 PTS system, IIA component YP_219756.1 393043 D 218497 CDS YP_219757.1 62184972 3338141 393822..395228 1 NC_004552.2 Similar to Chlamydia pneumoniae ct289 hypothetical protein cpn0062 or cpj0062 or cp0713 SWALL:Q9Z9B9 (EMBL:AE001591) (461 aa) fasta scores: E(): 4.2e-38, 35.71% id in 490 aa; hypothetical protein 395228 3338141 CAB341 Chlamydophila abortus S26/3 hypothetical protein YP_219757.1 393822 D 218497 CDS YP_219758.1 62184973 3338142 395408..397138 1 NC_004552.2 Similar to many including: Chlamydia pneumoniae hypothetical protein cpn0065/cp0709/cpj0065 cpn0065 or cp0709 or cpj0065 SWALL:Y065_CHLPN (SWALL:Q9Z9B6) (576 aa) fasta scores: E(): 1.8e-33, 28.96% id in 587 aa; hypothetical protein 397138 3338142 CAB342 Chlamydophila abortus S26/3 hypothetical protein YP_219758.1 395408 D 218497 CDS YP_219759.1 62184974 3338143 complement(397162..397776) 1 NC_004552.2 Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0440/cp0313/cpj0440 cpn0440 or cp0313 or cpj0440 SWALL:Y440_CHLPN (SWALL:Q9Z8A3) (212 aa) fasta scores: E(): 2.4e-13, 32.4% id in 179 aa. Note the alternative possible translational start site at codon 6; hypothetical protein 397776 3338143 CAB343 Chlamydophila abortus S26/3 hypothetical protein YP_219759.1 397162 R 218497 CDS YP_219760.1 62184975 3338144 complement(397773..398390) 1 NC_004552.2 Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0439 cpn0439 or cpj0439 or cp0314 SWALL:Q9Z8A4 (EMBL:AE001627) (175 aa) fasta scores: E(): 2.5e-09, 28.14% id in 167 aa. Note the alternative possible translational start site at codon 5; hypothetical protein 398390 3338144 CAB344 Chlamydophila abortus S26/3 hypothetical protein YP_219760.1 397773 R 218497 CDS YP_219761.1 62184976 3337499 398427..399515 1 NC_004552.2 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 399515 mnmA 3337499 mnmA Chlamydophila abortus S26/3 tRNA-specific 2-thiouridylase MnmA YP_219761.1 398427 D 218497 CDS YP_219762.1 62184977 3337632 complement(399493..402030) 1 NC_004552.2 Similar to Bacillus subtilis negative regulator of genetic competence ClpC/MecB SWALL:CLPC_BACSU (SWALL:P37571) (810 aa) fasta scores: E(): 2.7e-125, 51.97% id in 810 aa and to Chlamydia pneumoniae probable ATP-dependent clp protease ATP-binding subunit clpc or cpn0437 or cp0316 SWALL:CLPC_CHLPN (SWALL:Q9Z8A6) (845 aa) fasta scores: E(): 0, 92.43% id in 846 aa; negative regulator of genetic competence clpc/mecb 402030 clpC 3337632 clpC Chlamydophila abortus S26/3 negative regulator of genetic competence clpc/mecb YP_219762.1 399493 R 218497 CDS YP_219763.1 62184978 3338145 402198..402932 1 NC_004552.2 Similar to Chlamydia pneumoniae lipoate protein ligase-like protein lpla_1 or cpn0436 or cp0317 SWALL:Q9Z8A7 (EMBL:AE001626) (239 aa) fasta scores: E(): 5.3e-58, 62.82% id in 234 aa and to Bacillus halodurans lipoate protein ligase bh2812 SWALL:Q9K938 (EMBL:AP001516) (276 aa) fasta scores: E(): 4.9e-10, 29.06% id in 203 aa. Contains a iotin/lipoate A/B protein ligase motif; hypothetical protein 402932 3338145 CAB347 Chlamydophila abortus S26/3 hypothetical protein YP_219763.1 402198 D 218497 CDS YP_219764.1 62184979 3338146 402923..404353 1 NC_004552.2 Similar to Chlamydia pneumoniae phospholipase D superfamily cpn0435 or cpj0435 or cp0318 SWALL:Q9Z8A8 (EMBL:AE001626) (476 aa) fasta scores: E(): 5.1e-104, 51.68% id in 476 aa> Also similar in the C-terminus to several others e.g. Clostridium perfringens cardiolipin synthetase Cls or ClsD or cpe1430 SWALL:CLS_CLOPE (SWALL:Q9ZNC6) (476 aa) fasta scores: E(): 0.0027, 26.84% id in 190 aa; hypothetical protein 404353 3338146 CAB348 Chlamydophila abortus S26/3 hypothetical protein YP_219764.1 402923 D 218497 CDS YP_219765.1 62184980 3338147 404474..406546 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0556 tc0556 SWALL:Q9PKB1 (EMBL:AE002323) (690 aa) fasta scores: E(): 1.5e-154, 56.24% id in 681 aa; hypothetical protein 406546 3338147 CAB349 Chlamydophila abortus S26/3 hypothetical protein YP_219765.1 404474 D 218497 CDS YP_219766.1 62184981 3338148 406546..406887 1 NC_004552.2 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 406887 3338148 CAB350 Chlamydophila abortus S26/3 glycine cleavage system protein H YP_219766.1 406546 D 218497 CDS YP_219767.1 62184982 3338149 407009..407323 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00360 SWALL:Q823P7 (EMBL:AE016995) (97 aa) fasta scores: E(): 1.1e-22, 67.74% id in 93 aa; hypothetical protein 407323 3338149 CAB351 Chlamydophila abortus S26/3 hypothetical protein YP_219767.1 407009 D 218497 CDS YP_219768.1 62184983 3338150 407313..407645 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00361 SWALL:Q823P6 (EMBL:AE016995) (110 aa) fasta scores: E(): 1.3e-33, 79.8% id in 104 aa, and to Chlamydia pneumoniae hypothetical protein cpn0431 cpn0431 or cpj0431 or cp0322 or cpb0447 SWALL:Q9Z8B2 (EMBL:AE001626) (111 aa) fasta scores: E(): 0.0086, 30.39% id in 102 aa; hypothetical protein 407645 3338150 CAB351A Chlamydophila abortus S26/3 hypothetical protein YP_219768.1 407313 D 218497 CDS YP_219769.1 62184984 3337470 complement(407646..408440) 1 NC_004552.2 Similar to Haemophilus influenzae Na+-translocating NADH-quinone reductase subunit E, NqrE or hi0170 SWALL:NQRE_HAEIN (SWALL:P71342) (198 aa) fasta scores: E(): 3.3e-31, 48.48% id in 198 aa, and to Pasteurella multocida Na+-translocating NADH-quinone reductase subunit E NqrE or pm1332 SWALL:NQRE_PASMU (SWALL:Q9CLA7) (198 aa) fasta scores: E(): 1.3e-32, 50% id in 198 aa. Note the C-terminal extension of this protein.; Na(+)-translocating NADH-quinone reductase subunit E 408440 nqrE 3337470 nqrE Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit E YP_219769.1 407646 R 218497 CDS YP_219770.1 62184985 3337469 complement(408445..409086) 1 NC_004552.2 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 409086 nqrD 3337469 nqrD Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit D YP_219770.1 408445 R 218497 CDS YP_219771.1 62184986 3337468 complement(409073..410035) 1 NC_004552.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 410035 nqrC 3337468 nqrC Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit C YP_219771.1 409073 R 218497 CDS YP_219772.1 62184987 3337467 complement(410039..411550) 1 NC_004552.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 411550 nqrB 3337467 nqrB Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit B YP_219772.1 410039 R 218497 CDS YP_219773.1 62184988 3338152 complement(412191..412784) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct276 hypothetical protein cpn0425 or cpj0425 or cp0328 SWALL:Q9Z8B8 (EMBL:AE001625) (195 aa) fasta scores: E(): 1e-45, 72.22% id in 198 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 412784 3338152 CAB357 Chlamydophila abortus S26/3 hypothetical protein YP_219773.1 412191 R 218497 CDS YP_219774.1 62184989 3338153 complement(412801..414153) 1 NC_004552.2 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 414153 dnaA 3338153 dnaA Chlamydophila abortus S26/3 chromosome replication initiator DnaA YP_219774.1 412801 R 218497 CDS YP_219775.1 62184990 3338154 complement(414346..414777) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct274 SWALL:O84276 (EMBL:AE001300) (139 aa) fasta scores: E(): 3.6e-46, 88.63% id in 132 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 414777 3338154 CAB359 Chlamydophila abortus S26/3 hypothetical protein YP_219775.1 414346 R 218497 CDS YP_219776.1 62184991 3338155 complement(414781..415326) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0422/cp0331/cpj0422 cpn0422 or cp0331 or cpj0422 SWALL:Y422_CHLPN (SWALL:Q9Z8C1) (181 aa) fasta scores: E(): 5e-52, 75.13% id in 181 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 415326 3338155 CAB360 Chlamydophila abortus S26/3 hypothetical protein YP_219776.1 414781 R 218497 CDS YP_219777.1 62184992 3338156 415500..416396 1 NC_004552.2 Similar to Escherichia coli, and Escherichia coli O157:H7 S-adenosyl-methyltransferase MraW mraw or b0082 or z0092 or ecs0086 SWALL:MRAW_ECOLI (SWALL:P18595) (313 aa) fasta scores: E(): 5.1e-25, 38.48% id in 317 aa and to Rickettsia prowazekii S-adenosyl-methyltransferase MraW or rp569 SWALL:MRAW_RICPR (SWALL:Q9ZCY2) (306 aa) fasta scores: E(): 2.5e-27, 38.63% id in 308 aa; S-adenosyl-methyltransferase MraW 416396 mraW 3338156 mraW Chlamydophila abortus S26/3 S-adenosyl-methyltransferase MraW YP_219777.1 415500 D 218497 CDS YP_219778.1 62184993 3337369 416393..416680 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0543 SWALL:Q9PKC3 (EMBL:AE002322) (95 aa) fasta scores: E(): 2.3e-23, 64.21% id in 95 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 416680 3337369 CAB361A Chlamydophila abortus S26/3 hypothetical protein YP_219778.1 416393 D 218497 CDS YP_219779.1 62184994 3337370 416667..418616 1 NC_004552.2 Similar to Neisseria meningitidis penicillin-binding protein 2 PenA or Nma2072 or Nmb0413 SWALL:PBP2_NEIMA (SWALL:P11882) (581 aa) fasta scores: E(): 1.1e-11, 28.75% id in 546 aa, and to Buchnera aphidicola peptidoglycan synthetase FtsI or bu222 SWALL:FTSI_BUCAI (SWALL:P57317) (579 aa) fasta scores: E(): 2e-10, 26.57% id in 621 aa; penicillin-binding protein 418616 3337370 CAB362 Chlamydophila abortus S26/3 penicillin-binding protein YP_219779.1 416667 D 218497 CDS YP_219780.1 62184995 3337461 419373..420824 1 NC_004552.2 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 420824 murE 3337461 murE Chlamydophila abortus S26/3 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_219780.1 419373 D 218497 CDS YP_219781.1 62184996 3337372 420817..421536 1 NC_004552.2 Weakly similar to Thermoanaerobacter tengcongensis N-acetylmuramoyl-L-alanine amidase AmiC2 or tte2424 SWALL:Q8R7I3 (EMBL:AE013184) (219 aa) fasta scores: E(): 1.9e-18, 35.74% id in 207 aa and to Bacillus subtilis N-acetylmuramoyl-L-alanine amidase CwlB precursor SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 6.8e-16, 34.06% id in 182 aa; N-acetylmuramoyl-L-alanine amidase 421536 3337372 CAB364 Chlamydophila abortus S26/3 N-acetylmuramoyl-L-alanine amidase YP_219781.1 420817 D 218497 CDS YP_219782.1 62184997 3337998 421924..422226 1 NC_004552.2 Similar to many including: Haemophilus influenzae integration host factor alpha-subunit IhfA or HimA or Hi1313 SWALL:IHFA_HAEIN (SWALL:P43723) (96 aa) fasta scores: E(): 1.7e-06, 30.85% id in 94 aa and to Chlamydia pneumoniae probable DNA-binding protein HU Hup or cpn0416 or cp0338 SWALL:DBH_CHLPN (SWALL:Q9Z8C7) (100 aa) fasta scores: E(): 2.7e-36, 98% id in 100 aa; integration host factor alpha-subunit 422226 ihfA 3337998 ihfA Chlamydophila abortus S26/3 integration host factor alpha-subunit YP_219782.1 421924 D 218497 CDS YP_219783.1 62184998 3337373 422353..423537 1 NC_004552.2 Similar to several proteins of undefined function e.g. Chlamydia pneumoniae hypothetical protein Cp0339 SWALL:Q9K294 (EMBL:AE002196) (404 aa) fasta scores: E(): 3.1e-101, 63.33% id in 390 aa and to Chlamydia muridarum hypothetical protein Tc0537 tc0537 SWALL:Q9PKC8 (EMBL:AE002322) (393 aa) fasta scores: E(): 5.8e-89, 56.88% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 423537 3337373 CAB366 Chlamydophila abortus S26/3 hypothetical protein YP_219783.1 422353 D 218497 CDS YP_219784.1 62184999 3337970 423642..424616 1 NC_004552.2 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 424616 accA 3337970 accA Chlamydophila abortus S26/3 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_219784.1 423642 D 218497 CDS YP_219785.1 62185000 3337374 424582..426549 1 NC_004552.2 Similar to Bacillus subtilis hypothetical ABC transporter ATP-binding protein YfiC SWALL:YFIC_BACSU (SWALL:P54719) (604 aa) fasta scores: E(): 6.9e-46, 29.83% id in 590 aa and to Escherichia coli, and Escherichia coli O157:H7 lipid a export ATP-binding/permease MsbA or b0914 SWALL:MSBA_ECOLI (SWALL:P27299) (582 aa) fasta scores: E(): 1e-42, 28.97% id in 566 aa; ABC transporter, ATP-binding component 426549 3337374 CAB368 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219785.1 424582 D 218497 CDS YP_219786.2 114330035 3337375 complement(426563..427213) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct263 SWALL:O84265 (EMBL:AE001299) (196 aa) fasta scores: E(): 3.4e-19, 43.21% id in 162 aa. Note the differing N-termini of the other Chlamydia orthologues. An equivalent translational start site is present (complement 427211..427213) but this would lead to an uncommon overlap of 21 bps with the upstream CDS.; hypothetical protein 427213 3337375 CAB369 Chlamydophila abortus S26/3 hypothetical protein YP_219786.2 426563 R 218497 CDS YP_219787.1 62185002 3337376 complement(427194..427967) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct262 SWALL:O84264 (EMBL:AE001299) (256 aa) fasta scores: E(): 8.2e-55, 54.72% id in 254 aa, and to Deinococcus radiodurans hypothetical protein Dr1011 SWALL:Q9RVL6 (EMBL:AE001953) (301 aa) fasta scores: E(): 6.5e-26, 35.15% id in 256 aa; hypothetical protein 427967 3337376 CAB370 Chlamydophila abortus S26/3 hypothetical protein YP_219787.1 427194 R 218497 CDS YP_219788.1 62185003 3337650 complement(427964..428650) 1 NC_004552.2 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 428650 dnaQ 3337650 dnaQ Chlamydophila abortus S26/3 DNA polymerase III subunit epsilon YP_219788.1 427964 R 218497 CDS YP_219789.1 62185004 3337377 complement(428666..429139) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0531 SWALL:Q9PKD4 (EMBL:AE002322) (159 aa) fasta scores: E(): 1.1e-50, 75.79% id in 157 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 429139 3337377 CAB372 Chlamydophila abortus S26/3 hypothetical protein YP_219789.1 428666 R 218497 CDS YP_219790.1 62185005 3337378 complement(429171..429677) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct102 hypothetical protein cpn0408 or cpj0408 or cp0346 SWALL:Q9Z8D5 (EMBL:AE001624) (159 aa) fasta scores: E(): 9.6e-33, 63.39% id in 153 aa; hypothetical protein 429677 3337378 CAB373 Chlamydophila abortus S26/3 hypothetical protein YP_219790.1 429171 R 218497 CDS YP_219791.1 62185006 3337379 430029..430916 1 NC_004552.2 Similar to many proteins of undefined function including: Chlamydia pneumoniae HAD-superfamily hydrolase/phosphatase cpn0407 or cpj0407 or cp0348 SWALL:Q9Z8D6 (EMBL:AE001624) (295 aa) fasta scores: E(): 3.5e-69, 60.55% id in 289 aa and to Staphylococcus epidermidis conserved hypothetical protein se0329 SWALL:Q8CTS0 (EMBL:AE016745) (292 aa) fasta scores: E(): 0.0001, 21.35% id in 295 aa; hypothetical protein 430916 3337379 CAB374 Chlamydophila abortus S26/3 hypothetical protein YP_219791.1 430029 D 218497 CDS YP_219792.1 62185007 3337380 complement(430903..431802) 1 NC_004552.2 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 431802 3337380 CAB375 Chlamydophila abortus S26/3 enoyl-ACP reductase YP_219792.1 430903 R 218497 CDS YP_219793.1 62185008 3337381 432069..434267 1 NC_004552.2 Note rich in the aa Leu and Ser; hypothetical protein 434267 3337381 CAB376 Chlamydophila abortus S26/3 hypothetical protein YP_219793.1 432069 D 218497 CDS YP_219794.1 62185009 3338089 complement(436706..437530) 1 NC_004552.2 Similar to Rickettsia prowazekii ribosomal large subunit pseudouridine synthase C RluC or rp258 SWALL:RLUC_RICPR (SWALL:Q9ZDR7) (303 aa) fasta scores: E(): 1.2e-15, 29.82% id in 285 aa and to Chlamydia trachomatis predicted pseudouridine synthetase YceC or ct106 SWALL:O84108 (EMBL:AE001284) (303 aa) fasta scores: E(): 8.4e-71, 61.13% id in 265 aa; ribosomal large subunit pseudouridine synthase C 437530 rluC 3338089 rluC Chlamydophila abortus S26/3 ribosomal large subunit pseudouridine synthase C YP_219794.1 436706 R 218497 CDS YP_219795.1 62185010 3337464 437579..438688 1 NC_004552.2 Weakly similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 1.5e-31, 31.09% id in 312 aa. Note all 4 iron-sulfur (4fe-4s) binding sites are conserved between these two orthologues. Also similar to Bacillus halodurans adenine glycosylase bh0931 SWALL:Q9KEC2 (EMBL:AP001510) (372 aa) fasta scores: E(): 2.4e-44, 36.74% id in 362 aa; A/G-specific adenine glycosylase 438688 mutY 3337464 mutY Chlamydophila abortus S26/3 A/G-specific adenine glycosylase YP_219795.1 437579 D 218497 CDS YP_219796.1 62185011 3337383 438685..439080 1 NC_004552.2 Similar to the N-terminal domain of Haemophilus influenzae MazG protein MazG or hi0460 SWALL:MAZG_HAEIN (SWALL:P44723) (263 aa) fasta scores: E(): 2.6e-07, 31.45% id in 124 aa, and to Chlamydia pneumoniae ct255 hypothetical protein cpn0401 or cpj0401 or cp0354 SWALL:Q9Z8E2 (EMBL:AE001624) (130 aa) fasta scores: E(): 4.5e-21, 50% id in 126 aa; hypothetical protein 439080 3337383 CAB381 Chlamydophila abortus S26/3 hypothetical protein YP_219796.1 438685 D 218497 CDS YP_219797.1 62185012 3337384 complement(439261..440040) 1 NC_004552.2 Similar to many proteins of undefined function including: Oceanobacillus iheyensis hypothetical conserved protein ob3317 SWALL:Q8ELB4 (EMBL:AP004604) (234 aa) fasta scores: E(): 3.7e-06, 26.33% id in 224 aa, and to Bacillus anthracis CAAX amino terminal protease Ba5243 SWALL:Q81XJ4 (EMBL:AE017040) (227 aa) fasta scores: E(): 1.9e-05, 27.43% id in 226 aa; hypothetical protein 440040 3337384 CAB382 Chlamydophila abortus S26/3 hypothetical protein YP_219797.1 439261 R 218497 CDS YP_219798.1 62185013 3337385 complement(440044..440736) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct253 hypothetical protein Cpn0399 or cpj0399 or cp0356 SWALL:Q9Z8E4 (EMBL:AE001624) (215 aa) fasta scores: E(): 2.9e-61, 73.27% id in 217 aa. Note the differing N-termini.; hypothetical protein 440736 3337385 CAB383 Chlamydophila abortus S26/3 hypothetical protein YP_219798.1 440044 R 218497 CDS YP_219799.1 62185014 3337388 complement(442479..443528) 1 NC_004552.2 Note the differing N-termini of the product of this CDS compared to the other Chlamydiaceae.; hypothetical protein 443528 3337388 CAB385 Chlamydophila abortus S26/3 hypothetical protein YP_219799.1 442479 R 218497 CDS YP_219800.1 62185015 3337389 443928..444677 1 NC_004552.2 Similar to many proteins including: Myxococcus xanthus protein phosphatase 1 Pph1 SWALL:Q9KIU5 (EMBL:AF223364) (254 aa) fasta scores: E(): 2.7e-26, 36.88% id in 244 aa and to Bacillus anthracis protein phosphatase 2c-family protein ba4001 SWALL:Q81WH5 (EMBL:AE017036) (250 aa) fasta scores: E(): 1.4e-23, 39.07% id in 238 aa; phosphatase 444677 3337389 CAB386 Chlamydophila abortus S26/3 phosphatase YP_219800.1 443928 D 218497 CDS YP_219801.1 62185016 3337390 444701..445816 1 NC_004552.2 Similar to many aminotransferases including: Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or b2530 or c3056 or z3797 or ecs3396 or sf2577 or s2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 9.4e-25, 30.1% id in 382 aa and to Neisseria meningitidis cysteine desulfurase IscS or nmb1379 SWALL:ISCS_NEIMB (SWALL:Q9JYY0) (404 aa) fasta scores: E(): 8.1e-25, 30.72% id in 384 aa; cysteine desulfurase 445816 3337390 CAB387 Chlamydophila abortus S26/3 cysteine desulfurase YP_219801.1 444701 D 218497 CDS YP_219802.1 62185017 3337391 complement(445820..447034) 1 NC_004552.2 Similar to many proteins of undefined function inluding: Coxiella burnetii hypothetical protein Cbu0452 SWALL:Q83E77 (EMBL:AE016961) (417 aa) fasta scores: E(): 2.2e-12, 21.79% id in 413 aa and to Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 3.4e-09, 21.22% id in 410 aa; membrane transport protein 447034 3337391 CAB388 Chlamydophila abortus S26/3 membrane transport protein YP_219802.1 445820 R 218497 CDS YP_219803.1 62185018 3337392 complement(447027..448262) 1 NC_004552.2 Similar to many including: Yersinia pestis membrane protein Ypo3298 or Y0890 SWALL:Q8ZBU4 (EMBL:AJ414156) (427 aa) fasta scores: E(): 1.9e-21, 24.1% id in 419 aa and Escherichia coli hypothetical protein YfjD or b2612/b2613 SWALL:YFJD_ECOLI (SWALL:P37908) (428 aa) fasta scores: E(): 2.9e-21, 23.98% id in 417 aa; membrane transport protein 448262 3337392 CAB389 Chlamydophila abortus S26/3 membrane transport protein YP_219803.1 447027 R 218497 CDS YP_219804.1 62185019 3337393 complement(448272..448601) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct038 hypothetical protein cpn0393 or cpj0393 or cp0362 SWALL:Q9Z8F0 (EMBL:AE001623) (115 aa) fasta scores: E(): 8.7e-20, 50.9% id in 110 aa; hypothetical protein 448601 3337393 CAB390 Chlamydophila abortus S26/3 hypothetical protein YP_219804.1 448272 R 218497 CDS YP_219805.1 62185020 3337641 complement(448611..449183) 1 NC_004552.2 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 449183 dcd 3337641 dcd Chlamydophila abortus S26/3 deoxycytidine triphosphate deaminase YP_219805.1 448611 R 218497 CDS YP_219806.1 62185021 3338196 449788..450801 1 NC_004552.2 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 450801 ruvB 3338196 ruvB Chlamydophila abortus S26/3 Holliday junction DNA helicase RuvB YP_219806.1 449788 D 218497 CDS YP_219807.1 62185022 3337394 450798..451613 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae hypothetical protein cpn0389/cp0366/cpj0389 cpn0389 or cp0366 or cpj0389 SWALL:Y389_CHLPN (SWALL:Q9Z8F4) (272 aa) fasta scores: E(): 3.4e-84, 72.18% id in 266 aa; hypothetical protein 451613 3337394 CAB393 Chlamydophila abortus S26/3 hypothetical protein YP_219807.1 450798 D 218497 CDS YP_219808.1 62185023 3337395 complement(451610..453601) 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic proteins including: Mycobacterium tuberculosis glycogen operon protein GlgX homolog or rv1564c or mt1615 or mtcy48.01 SWALL:GLGX_MYCTU (SWALL:Q10767) (721 aa) fasta scores: E(): 8.4e-72, 40.06% id in 649 aa, Pirellula sp glycogen operon protein Glgx-2 or rb9292 SWALL:CAD76180 (EMBL:BX294149) (733 aa) fasta scores: E(): 8.7e-95, 44.75% id in 601 aa and Arabidopsis thaliana isoamylase at4g09020 SWALL:Q8RWW6 (EMBL:AY091058) (764 aa) fasta scores: E(): 1.4e-89, 45.66% id in 635 aa; glycosyl hydrolase 453601 3337395 CAB394 Chlamydophila abortus S26/3 glycosyl hydrolase YP_219808.1 451610 R 218497 CDS YP_219809.1 62185024 3337396 453733..454233 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct043 hypothetical protein cpn0387 or cpj0387 or cp0368 SWALL:Q9Z8F6 (EMBL:AE001623) (166 aa) fasta scores: E(): 9.3e-65, 98.79% id in 166 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 454233 3337396 CAB395 Chlamydophila abortus S26/3 hypothetical protein YP_219809.1 453733 D 218497 CDS YP_219810.1 62185025 3337397 454886..455362 1 NC_004552.2 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 455362 3337397 CAB396 Chlamydophila abortus S26/3 single-stranded DNA-binding protein YP_219810.1 454886 D 218497 CDS YP_219811.1 62185026 3337398 455400..456902 1 NC_004552.2 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 456902 3337398 CAB397 Chlamydophila abortus S26/3 leucyl aminopeptidase YP_219811.1 455400 D 218497 CDS YP_219812.1 62185027 3337399 457044..457508 1 NC_004552.2 Similar to Bordetella pertussis histone H1 SWALL:Q45370 (EMBL:L37438) (182 aa) fasta scores: E(): 7e-09, 41.13% id in 141 aa and to Xanthomonas axonopodis histone h1 xac3058 SWALL:Q8PI40 (EMBL:AE011948) (155 aa) fasta scores: E(): 2e-08, 52.72% id in 110 aa; histone-like protein 457508 3337399 CAB398 Chlamydophila abortus S26/3 histone-like protein YP_219812.1 457044 D 218497 CDS YP_219813.1 62185028 3337400 457674..458609 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct047 hypothetical protein cpn0383 or cpj0383 or cp0372 SWALL:Q9Z8G0 (EMBL:AE001622) (315 aa) fasta scores: E(): 1.3e-62, 51.93% id in 310 aa; hypothetical protein 458609 3337400 CAB399 Chlamydophila abortus S26/3 hypothetical protein YP_219813.1 457674 D 218497 CDS YP_219814.1 62185029 3337401 458606..459316 1 NC_004552.2 Similar to many proteins of undefined function including: Ralstonia solanacearum probable transmembrane protein Rsc1045 or Rs04205 SWALL:Q8Y0J8 (EMBL:AL646062) (243 aa) fasta scores: E(): 1.4e-20, 37.7% id in 244 aa and to Neisseria meningitidis hypothetical protein Nmb1908 SWALL:Q9JXS3 (EMBL:AE002540) (241 aa) fasta scores: E(): 1.3e-16, 30.93% id in 236 aa; hypothetical protein 459316 3337401 CAB400 Chlamydophila abortus S26/3 hypothetical protein YP_219814.1 458606 D 218497 CDS YP_219815.1 62185030 3337402 complement(459372..459854) 1 NC_004552.2 doubtful CDS which is similar in part to Chlamydophila caviae hypothetical protein cca00415 SWALL:Q823J5 (EMBL:AE016995) (77 aa) fasta scores: E(): 7.1e-09, 58.18% id in 55 aa; hypothetical protein 459854 3337402 CAB401 Chlamydophila abortus S26/3 hypothetical protein YP_219815.1 459372 R 218497 CDS YP_219816.1 62185031 3337403 459997..461358 1 NC_004552.2 Weakly similar to several Prokaryotic and Eukaryotic proteins including: Chlamydia trachomatis hypothetical protein Ct049 SWALL:O84052 (EMBL:AE001279) (490 aa) fasta scores: E(): 2.1e-15, 30.13% id in 521 aa, and to Matricaria chamomilla thiol protease SWALL:Q9SP93 (EMBL:AF182079) (501 aa) fasta scores: E(): 1.2, 21.01% id in 395 aa; hypothetical protein 461358 3337403 CAB402 Chlamydophila abortus S26/3 hypothetical protein YP_219816.1 459997 D 218497 CDS YP_219817.1 62185032 3337404 complement(461409..462794) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia muridarum hypothetical protein Tc0320 tc0320 SWALL:Q9PKZ0 (EMBL:AE002299) (397 aa) fasta scores: E(): 2.2e-08, 29.84% id in 439 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 462794 3337404 CAB403 Chlamydophila abortus S26/3 hypothetical protein YP_219817.1 461409 R 218497 CDS YP_219818.1 62185033 3337405 complement(462861..463982) 1 NC_004552.2 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 463982 3337405 CAB404 Chlamydophila abortus S26/3 coproporphyrinogen III oxidase YP_219818.1 462861 R 218497 CDS YP_219819.1 62185034 3337406 complement(463972..464418) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct053 hypothetical protein cpn0379 or cpj0379 or cp0377 SWALL:Q9Z8G4 (EMBL:AE001622) (148 aa) fasta scores: E(): 1.4e-42, 84.45% id in 148 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 464418 3337406 CAB405 Chlamydophila abortus S26/3 hypothetical protein YP_219819.1 463972 R 218497 CDS YP_219820.1 62185035 3338210 464573..467299 1 NC_004552.2 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 467299 sucA 3338210 sucA Chlamydophila abortus S26/3 2-oxoglutarate dehydrogenase E1 YP_219820.1 464573 D 218497 CDS YP_219821.1 62185036 3338211 467296..468393 1 NC_004552.2 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 468393 sucB 3338211 sucB Chlamydophila abortus S26/3 dihydrolipoamide succinyltransferase YP_219821.1 467296 D 218497 CDS YP_219822.1 62185037 3337407 complement(468404..469147) 1 NC_004552.2 Similar to several proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct056 SWALL:O84059 (EMBL:AE001280) (243 aa) fasta scores: E(): 3.2e-56, 60.97% id in 246 aa, and to Brucella melitensis hypothetical cytosolic protein Bmei0486 bmei0486 SWALL:Q8YIF8 (EMBL:AE009491) (265 aa) fasta scores: E(): 1.9e-12, 28.06% id in 196 aa; hypothetical protein 469147 3337407 CAB408 Chlamydophila abortus S26/3 hypothetical protein YP_219822.1 468404 R 218497 CDS YP_219823.1 62185038 3337408 complement(469161..470981) 1 NC_004552.2 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-clclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; these proteins appear to consist of duplicate domains as compared to Escherichia coli IspG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 470981 3337408 CAB409 Chlamydophila abortus S26/3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_219823.1 469161 R 218497 CDS YP_219824.1 62185039 3337409 complement(471289..472470) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00424 SWALL:Q823I6 (EMBL:AE016995) (400 aa) fasta scores: E(): 6.9e-93, 63.01% id in 392 aa and to Thermoanaerobacter tengcongensis O-acetylhomoserine sulfhydrylase SWALL:Q8R872 (EMBL:AE013162) (427 aa) fasta scores: E(): 2.5, 28.19% id in 188 aa; hypothetical protein 472470 3337409 CAB410 Chlamydophila abortus S26/3 hypothetical protein YP_219824.1 471289 R 218497 CDS YP_219825.1 62185040 3337410 complement(472566..473588) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00425 SWALL:Q823I5 (EMBL:AE016995) (324 aa) fasta scores: E(): 4.5e-78, 63.3% id in 327 aa; hypothetical protein 473588 3337410 CAB411 Chlamydophila abortus S26/3 hypothetical protein YP_219825.1 472566 R 218497 CDS YP_219826.1 62185041 3337411 complement(473961..475139) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00426 SWALL:Q823I4 (EMBL:AE016995) (379 aa) fasta scores: E(): 7e-44, 52.77% id in 396 aa; hypothetical protein 475139 3337411 CAB412 Chlamydophila abortus S26/3 hypothetical protein YP_219826.1 473961 R 218497 CDS YP_219827.1 62185042 3337412 complement(475329..475604) 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic ferredoxins including: Raphanus sativus ferredoxin, root r-b2 SWALL:FER2_RAPSA (SWALL:P14937) (98 aa) fasta scores: E(): 0.0044, 37.68% id in 69 aa and hodobacter capsulatus ferredoxin IV FdxC SWALL:FER4_RHOCA (SWALL:P16022) (95 aa) fasta scores: E(): 8.3e-08, 39.13% id in 92 aa; ferredoxin 475604 3337412 CAB413 Chlamydophila abortus S26/3 ferredoxin YP_219827.1 475329 R 218497 CDS YP_219828.1 62185043 3338045 475882..477639 1 NC_004552.2 Similar to Salmonella typhimurium flagellar biosynthesis protein FlhA or stm1913 SWALL:FLHA_SALTY (SWALL:P40729) (692 aa) fasta scores: E(): 1.9e-31, 25.07% id in 674 aa, and to Caulobacter crescentus flagellar biosynthesis protein FlhA SWALL:FLHA_CAUCR (SWALL:Q03845) (700 aa) fasta scores: E(): 1.3e-32, 27.38% id in 672 aa; type III secretion system protein 477639 flhA 3338045 flhA Chlamydophila abortus S26/3 type III secretion system protein YP_219828.1 475882 D 218497 CDS YP_219829.1 62185044 3337413 477744..478517 1 NC_004552.2 expressed in response to temperature increase; may be involved in expression of genes involved in the developmental cycle of Chlamydia; RNA polymerase sigma factor sigma-28 478517 3337413 CAB415 Chlamydophila abortus S26/3 RNA polymerase sigma factor sigma-28 YP_219829.1 477744 D 218497 CDS YP_219830.1 62185045 3337414 complement(478514..478807) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00430 SWALL:Q823I0 (EMBL:AE016995) (92 aa) fasta scores: E(): 4.5e-12, 55.4% id in 74 aa; hypothetical protein 478807 3337414 CAB416 Chlamydophila abortus S26/3 hypothetical protein YP_219830.1 478514 R 218497 CDS YP_219831.1 62185046 3338237 478968..480206 1 NC_004552.2 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 480206 tyrS 3338237 tyrS Chlamydophila abortus S26/3 tyrosyl-tRNA synthetase YP_219831.1 478968 D 218497 CDS YP_219832.1 62185047 3337737 480220..481674 1 NC_004552.2 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 481674 gnd 3337737 gnd Chlamydophila abortus S26/3 6-phosphogluconate dehydrogenase YP_219832.1 480220 D 218497 CDS YP_219833.1 62185048 3337438 complement(481865..483673) 1 NC_004552.2 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 483673 lepA 3337438 lepA Chlamydophila abortus S26/3 GTP-binding protein LepA YP_219833.1 481865 R 218497 CDS YP_219834.1 62185049 3337415 483905..485212 1 NC_004552.2 Similar to several Chlamydial proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00434 SWALL:Q823H6 (EMBL:AE016995) (451 aa) fasta scores: E(): 1.6e-99, 58.39% id in 423 aa; hypothetical protein 485212 3337415 CAB420 Chlamydophila abortus S26/3 hypothetical protein YP_219834.1 483905 D 218497 CDS YP_219835.1 62185050 3337416 complement(485295..486893) 1 NC_004552.2 Similar to Rickettsia typhi ADP/ATP carrier protein tlc1 SWALL:Q83W30 (EMBL:AJ507301) (498 aa) fasta scores: E(): 9.1e-82, 43.97% id in 498 aa and Arabidopsis thaliana chloroplast ADP/ATP carrier protein 1, chloroplast precursor AatP1 or at1g80300 or f5i6.5 SWALL:TLC1_ARATH (SWALL:Q39002) (624 aa) fasta scores: E(): 2.9e-98, 52.81% id in 498 aa; ADP/ATP carrier protein 486893 3337416 CAB421 Chlamydophila abortus S26/3 ADP/ATP carrier protein YP_219835.1 485295 R 218497 CDS YP_219836.1 62185051 3337417 complement(487114..487626) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00436 SWALL:Q823H4 (EMBL:AE016995) (167 aa) fasta scores: E(): 2e-61, 97.6% id in 167 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 487626 3337417 CAB422 Chlamydophila abortus S26/3 hypothetical protein YP_219836.1 487114 R 218497 CDS YP_219837.1 62185052 3337418 488113..489078 1 NC_004552.2 Similar to Bacillus subtilis manganese-binding lipoprotein MntA precursor SWALL:MNTA_BACSU (SWALL:O34385) (306 aa) fasta scores: E(): 1.3e-15, 25.56% id in 309 aa and Pirellula sp manganese ABC transporter substrate binding protein mtsa or rb12440 SWALL:CAD77589 (EMBL:BX294155) (366 aa) fasta scores: E(): 1.5e-16, 29.37% id in 320 aa; ABC transporter, substrate binding lipoprotein 489078 3337418 CAB423 Chlamydophila abortus S26/3 ABC transporter, substrate binding lipoprotein YP_219837.1 488113 D 218497 CDS YP_219838.1 62185053 3337419 489075..489854 1 NC_004552.2 Similar to Bacillus subtilis manganese transport system ATP-binding protein MntB SWALL:MNTB_BACSU (SWALL:O34338) (250 aa) fasta scores: E(): 2.9e-35, 46.12% id in 245 aa, and to Pirellula sp manganese transport system ATP-binding protein Rb12438 SWALL:CAD77587 (EMBL:BX294155) (280 aa) fasta scores: E(): 6.9e-37, 46.18% id in 249 aa; ABC transporter, ATP-binding component 489854 3337419 CAB424 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219838.1 489075 D 218497 CDS YP_219839.1 62185054 3337420 489855..491204 1 NC_004552.2 Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 2.7e-16, 23.52% id in 391 aa and Pirellula sp manganese ABC transporter permease Rb12437 SWALL:CAD77586 (EMBL:BX294155) (444 aa) fasta scores: E(): 2.6e-13, 23.51% id in 421 aa; ABC transporter, membrane permease 491204 3337420 CAB425 Chlamydophila abortus S26/3 ABC transporter, membrane permease YP_219839.1 489855 D 218497 CDS YP_219840.1 62185055 3337739 491201..492184 1 NC_004552.2 Similar to Bacillus subtilis manganese transport system membrane protein MntC SWALL:MNTC_BACSU (SWALL:O35024) (435 aa) fasta scores: E(): 4.1e-14, 25% id in 268 aa and Fusobacterium nucleatum high-affinity zinc uptake system membrane protein ZnuB fn0670 SWALL:Q8RFM2 (EMBL:AE010578) (305 aa) fasta scores: E(): 5.4e-11, 25.17% id in 290 aa; ABC transporter, membrane permease 492184 3337739 CAB426 Chlamydophila abortus S26/3 ABC transporter, membrane permease YP_219840.1 491201 D 218497 CDS YP_219841.1 62185056 3337656 492224..493363 1 NC_004552.2 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 493363 dxr 3337656 dxr Chlamydophila abortus S26/3 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_219841.1 492224 D 218497 CDS YP_219842.1 62185057 3337741 493376..495244 1 NC_004552.2 Similar to many predicted metalloproteases including: Borrelia burgdorferi hypothetical zinc metalloprotease Bb0118 SWALL:Y118_BORBU (SWALL:O51145) (437 aa) fasta scores: E(): 1e-13, 27.95% id in 322 aa and Chlamydia trachomatis hypothetical zinc metalloprotease Ct072 SWALL:Y072_CHLTR (SWALL:O84075) (619 aa) fasta scores: E(): 4.2e-150, 59.51% id in 620 aa; metalloprotease 495244 3337741 CAB428 Chlamydophila abortus S26/3 metalloprotease YP_219842.1 493376 D 218497 CDS YP_219843.1 62185058 3337742 complement(495195..496181) 1 NC_004552.2 Similar to Chlamydia pneumoniae Omp cpj0342 or cp0417 SWALL:Q9RB74 (EMBL:AE002203) (325 aa) fasta scores: E(): 3.3e-100, 75.84% id in 327 aa; hypothetical protein 496181 3337742 CAB429 Chlamydophila abortus S26/3 hypothetical protein YP_219843.1 495195 R 218497 CDS YP_219844.1 62185059 3338079 complement(496287..497390) 1 NC_004552.2 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 497390 recF 3338079 recF Chlamydophila abortus S26/3 recombination protein F YP_219844.1 496287 R 218497 CDS YP_219845.1 62185060 3337649 complement(497390..498490) 1 NC_004552.2 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 498490 dnaN 3337649 dnaN Chlamydophila abortus S26/3 DNA polymerase III subunit beta YP_219845.1 497390 R 218497 CDS YP_219846.1 62185061 3338207 498730..499182 1 NC_004552.2 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 499182 smpB 3338207 smpB Chlamydophila abortus S26/3 SsrA-binding protein YP_219846.1 498730 D 218497 CDS YP_219847.1 62185062 3337255 complement(499163..500107) 1 NC_004552.2 Similar to Haemophilus influenzae thiamine biosynthesis lipoprotein ApbE precursor hi0172 SWALL:APBE_HAEIN (SWALL:P44550) (346 aa) fasta scores: E(): 3.4e-23, 29.44% id in 326 aa, and to Vibrio cholerae thiamin biosynthesis lipoprotein ApbE vc2289 SWALL:Q9KPS3 (EMBL:AE004300) (367 aa) fasta scores: E(): 1.1e-22, 29.29% id in 314 aa; thiamine biosynthesis lipoprotein 500107 apbE 3337255 apbE Chlamydophila abortus S26/3 thiamine biosynthesis lipoprotein YP_219847.1 499163 R 218497 CDS YP_219848.1 62185063 3337743 complement(500077..500940) 1 NC_004552.2 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 500940 3337743 CAB434 Chlamydophila abortus S26/3 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_219848.1 500077 R 218497 CDS YP_219849.1 62185064 3337744 complement(500931..501446) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0351 SWALL:Q9PKW0 (EMBL:AE002303) (157 aa) fasta scores: E(): 6.2e-21, 42.85% id in 147 aa; hypothetical protein 501446 3337744 CAB435 Chlamydophila abortus S26/3 hypothetical protein YP_219849.1 500931 R 218497 CDS YP_219850.1 62185065 3337745 501657..501947 1 NC_004552.2 Similar to Chlamydia trachomatis CDS idenitfied in the intracellular developmental cycle as a late transcription unit B protein LtuB or ct080 SWALL:LTUB_CHLTR (SWALL:Q46404) (97 aa) fasta scores: E(): 1.1e-10, 51.02% id in 98 aa; late transcription unit B protein 501947 3337745 CAB436 Chlamydophila abortus S26/3 late transcription unit B protein YP_219850.1 501657 D 218497 CDS YP_219851.1 62185066 3337746 502309..504048 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct082 SWALL:O84084 (EMBL:AE001282) (560 aa) fasta scores: E(): 8.1e-45, 44.8% id in 587 aa. Note the high numbers of Serine residues in the C-terminus of the predicted product of this CDS. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 504048 3337746 CAB437 Chlamydophila abortus S26/3 hypothetical protein YP_219851.1 502309 D 218497 CDS YP_219852.1 62185067 3337747 504050..504511 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct083 hypothetical protein cpn0330 or cpj0330 or cp0427 SWALL:Q9Z8K8 (EMBL:AE001617) (158 aa) fasta scores: E(): 5.8e-29, 58.86% id in 158 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 504511 3337747 CAB438 Chlamydophila abortus S26/3 hypothetical protein YP_219852.1 504050 D 218497 CDS YP_219853.1 62185068 3337748 complement(504508..505566) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00453 SWALL:O34024 (EMBL:U88070) (351 aa) fasta scores: E(): 8.1e-103, 72.72% id in 352 aa; hypothetical protein 505566 3337748 CAB439 Chlamydophila abortus S26/3 hypothetical protein YP_219853.1 504508 R 218497 CDS YP_219854.1 62185069 3337421 complement(505672..507417) 1 NC_004552.2 Similar to Thermoplasma volcanium hypothetical protein tv0410 or tvg0397730 SWALL:Q97BP5 (EMBL:AP000992) (481 aa) fasta scores: E(): 2.5e-58, 36.12% id in 454 aa, and to Bacillus halodurans hypothetical protein Bh3930 bh3930 SWALL:Q9K605 (EMBL:AP001520) (610 aa) fasta scores: E(): 5.2e-52, 36.85% id in 559 aa; hypothetical protein 507417 3337421 CAB440 Chlamydophila abortus S26/3 hypothetical protein YP_219854.1 505672 R 218497 CDS YP_219855.1 62185070 3338093 complement(507443..507712) 1 NC_004552.2 required for 70S ribosome assembly; 50S ribosomal protein L28 507712 rpmB 3338093 rpmB Chlamydophila abortus S26/3 50S ribosomal protein L28 YP_219855.1 507443 R 218497 CDS YP_219856.1 62185071 3337458 complement(507885..509477) 1 NC_004552.2 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 509477 malQ 3337458 malQ Chlamydophila abortus S26/3 4-alpha-glucanotransferase YP_219856.1 507885 R 218497 CDS YP_219857.1 62185072 3338199 complement(509515..509955) 1 NC_004552.2 Similar to Chlamydophila caviae Scc1 protein or SycE or cca00457 SWALL:O34021 (EMBL:U88070) (146 aa) fasta scores: E(): 1.8e-53, 95.2% id in 146 aa; Type III secretion chaperone 509955 scc 3338199 scc Chlamydophila abortus S26/3 Type III secretion chaperone YP_219857.1 509515 R 218497 CDS YP_219858.1 62185073 3337422 complement(509971..511167) 1 NC_004552.2 Similar to Pseudomonas aeruginosa (Pseudomonas outer membrane protein) PopN or pa1698 SWALL:O30531 (EMBL:AF010150) (288 aa) fasta scores: E(): 0.26, 23.82% id in 256 aa, and to Chlamydophila caviae CopN protein copn or cca00458 SWALL:O34020 (EMBL:U88070) (397 aa) fasta scores: E(): 2.3e-120, 86.68% id in 398 aa; hypothetical protein 511167 3337422 CAB444 Chlamydophila abortus S26/3 hypothetical protein YP_219858.1 509971 R 218497 CDS YP_219859.1 62185074 3337622 complement(511192..513321) 1 NC_004552.2 Similar to Yersinia enterocolitica low calcium response locus protein D LcrD SWALL:LCRD_YEREN (SWALL:P21210) (704 aa) fasta scores: E(): 7.2e-118, 46.23% id in 703 aa and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus protein D LcrD or ypcd1.34c or y5044 or y0047 SWALL:LCRD_YERPE (SWALL:P31487) (704 aa) fasta scores: E(): 2.8e-117, 46.23% id in 703 aa; membrane transport protein 513321 3337622 CAB445 Chlamydophila abortus S26/3 membrane transport protein YP_219859.1 511192 R 218497 CDS YP_219860.1 62185075 3337749 complement(513321..514403) 1 NC_004552.2 Similar to Bacillus subtilis flagellar biosynthetic protein FlhB SWALL:FLHB_BACSU (SWALL:P35538) (360 aa) fasta scores: E(): 1.1e-30, 32.85% id in 350 aa, Chlamydophila caviae hypothetical protein SWALL:O34018 (EMBL:U88070) (360 aa) fasta scores: E(): 5.5e-126, 96.11% id in 360 aa and Yersinia pestis, and Yersinia pseudotuberculosis yop proteins translocation protein U YscU or ypcd1.47 or y5031 or y0034 SWALL:YSCU_YERPE (SWALL:P40300) (354 aa) fasta scores: E(): 3e-32, 32.76% id in 354 aa; type III secretion system protein 514403 3337749 CAB446 Chlamydophila abortus S26/3 type III secretion system protein YP_219860.1 513321 R 218497 CDS YP_219861.1 62185076 3337750 514765..515859 1 NC_004552.2 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 515859 3337750 CAB447 Chlamydophila abortus S26/3 GTP-dependent nucleic acid-binding protein EngD YP_219861.1 514765 D 218497 CDS YP_219862.1 62185077 3338086 complement(515837..516751) 1 NC_004552.2 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 516751 ribF 3338086 ribF Chlamydophila abortus S26/3 bifunctional riboflavin kinase/FMN adenylyltransferase YP_219862.1 515837 R 218497 CDS YP_219863.1 62185078 3338233 complement(516735..517442) 1 NC_004552.2 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 517442 truB 3338233 truB Chlamydophila abortus S26/3 tRNA pseudouridine synthase B YP_219863.1 516735 R 218497 CDS YP_219864.1 62185079 3337738 complement(517483..517845) 1 NC_004552.2 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 517845 rbfA 3337738 rbfA Chlamydophila abortus S26/3 ribosome-binding factor A YP_219864.1 517483 R 218497 CDS YP_219865.1 62185080 3338003 complement(517852..520476) 1 NC_004552.2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 520476 infB 3338003 infB Chlamydophila abortus S26/3 translation initiation factor IF-2 YP_219865.1 517852 R 218497 CDS YP_219866.1 62185081 3337472 complement(520466..521770) 1 NC_004552.2 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 521770 nusA 3337472 nusA Chlamydophila abortus S26/3 transcription elongation factor NusA YP_219866.1 520466 R 218497 CDS YP_219867.1 62185082 3338104 complement(521861..523606) 1 NC_004552.2 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 523606 rpsA 3338104 rpsA Chlamydophila abortus S26/3 30S ribosomal protein S1 YP_219867.1 521861 R 218497 CDS YP_219868.1 62185083 3338235 523775..524710 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic thioredoxins including: Mycobacterium smegmatis thioredoxin reductase TrxB SWALL:TRXB_MYCSM (SWALL:O30973) (311 aa) fasta scores: E(): 2.4e-54, 50.64% id in 310 aa, and to Arabidopsis thaliana thioredoxin reductase 2 Ntr2 or at2g17420 or f5j6.18 SWALL:TRB2_ARATH (SWALL:Q39242) (383 aa) fasta scores: E(): 4.5e-69, 57.82% id in 313 aa; thioredoxin reductase 524710 trxB 3338235 trxB Chlamydophila abortus S26/3 thioredoxin reductase YP_219868.1 523775 D 218497 CDS YP_219869.1 62185084 3337979 complement(524702..525070) 1 NC_004552.2 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 525070 acpS 3337979 acpS Chlamydophila abortus S26/3 4'-phosphopantetheinyl transferase YP_219869.1 524702 R 218497 CDS YP_219870.1 62185085 3337566 complement(525086..525532) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct101 hypothetical protein cpn0312 or cpj0312 or cp0446 SWALL:Q9Z8M6 (EMBL:AE001616) (151 aa) fasta scores: E(): 5.1e-26, 48.29% id in 147 aa; hypothetical protein 525532 3337566 CAB456 Chlamydophila abortus S26/3 hypothetical protein YP_219870.1 525086 R 218497 CDS YP_219871.1 62185086 3337449 525603..526493 1 NC_004552.2 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 526493 lgt 3337449 lgt Chlamydophila abortus S26/3 prolipoprotein diacylglyceryl transferase YP_219871.1 525603 D 218497 CDS YP_219872.1 62185087 3337567 526589..528973 1 NC_004552.2 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 528973 3337567 CAB458 Chlamydophila abortus S26/3 inner membrane protein translocase component YidC YP_219872.1 526589 D 218497 CDS YP_219873.1 62185088 3337643 529040..530422 1 NC_004552.2 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 530422 dnaA 3337643 dnaA Chlamydophila abortus S26/3 chromosome replication initiator DnaA YP_219873.1 529040 D 218497 CDS YP_219874.1 62185089 3337568 complement(530424..530780) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00474 SWALL:Q823E5 (EMBL:AE016995) (131 aa) fasta scores: E(): 2.4e-19, 52.89% id in 121 aa; lipoprotein 530780 3337568 CAB460 Chlamydophila abortus S26/3 lipoprotein YP_219874.1 530424 R 218497 CDS YP_219875.1 62185090 3338058 530995..533493 1 NC_004552.2 Similar to Prokaryotic and Eukaryotic glycogen phosphorylase including: Escherichia coli, and Shigella flexneri glycogen phosphorylase GlgP or GlgY SWALL:PHSG_ECOLI (SWALL:P13031) (815 aa) fasta scores: E(): 1e-155, 47.46% id in 809 aa and Homo sapiens glycogen phosphorylase, brain form PygB SWALL:PHS3_HUMAN (SWALL:P11216) (843 aa) fasta scores: E(): 3.2e-175, 53.62% id in 813 aa; glycogen phosphorylase 533493 glgP 3338058 glgP Chlamydophila abortus S26/3 glycogen phosphorylase YP_219875.1 530995 D 218497 CDS YP_219876.1 62185091 3337659 complement(533565..534854) 1 NC_004552.2 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 534854 pdhC 3337659 pdhC Chlamydophila abortus S26/3 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_219876.1 533565 R 218497 CDS YP_219877.1 62185092 3337982 complement(534859..535845) 1 NC_004552.2 Similar to the C-terminal beta domains of: Rhizobium meliloti pyruvate dehydrogenase E1 component, beta subunit PdhB SWALL:ODPB_RHIME (SWALL:Q9R9N4) (460 aa) fasta scores: E(): 2.1e-63, 50% id in 326 aa and to Brucella melitensis pyruvate dehydrogenase E1 component, beta subunit bmei0855 SWALL:Q8YHE6 (EMBL:AE009526) (461 aa) fasta scores: E(): 3.8e-64, 50.3% id in 326 aa; pyruvate dehydrogenase E1 component, beta subunit 535845 pdhB 3337982 pdhB Chlamydophila abortus S26/3 pyruvate dehydrogenase E1 component, beta subunit YP_219877.1 534859 R 218497 CDS YP_219878.1 62185093 3337753 complement(535838..536863) 1 NC_004552.2 Similar to the N-terminal alpha subunits of: Rhizobium meliloti pyruvate dehydrogenase E1 component, alpha subunit PdhA SWALL:ODPA_RHIME (SWALL:Q9R9N5) (348 aa) fasta scores: E(): 9e-38, 40.13% id in 304 aa and Rickettsia sibirica pyruvate dehydrogenase E1 component alpha subunit SWALL:EAA25604 (EMBL:AABW01000001) (326 aa) fasta scores: E(): 1.3e-39, 39.81% id in 319 aa; pyruvate dehydrogenase e1 component, alpha subunit 536863 pdhA 3337753 pdhA Chlamydophila abortus S26/3 pyruvate dehydrogenase e1 component, alpha subunit YP_219878.1 535838 R 218497 CDS YP_219879.1 62185094 3337569 537028..538059 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct244 hypothetical protein cpn0303 or cpj0303 SWALL:Q9Z8N5 (EMBL:AE001615) (346 aa) fasta scores: E(): 1.1e-72, 53.6% id in 347 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 538059 3337569 CAB465 Chlamydophila abortus S26/3 hypothetical protein YP_219879.1 537028 D 218497 CDS YP_219880.1 62185095 3337456 complement(538065..539144) 1 NC_004552.2 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 539144 lpxD 3337456 lpxD Chlamydophila abortus S26/3 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_219880.1 538065 R 218497 CDS YP_219881.1 62185096 3337570 complement(539172..539711) 1 NC_004552.2 Similar to Chlamydia trachomatis OmpH-like protein precursor ct242 SWALL:OMPH_CHLTR (SWALL:Q9ZN58) (173 aa) fasta scores: E(): 8.5e-29, 60.33% id in 179 aa; hypothetical protein 539711 3337570 CAB467 Chlamydophila abortus S26/3 hypothetical protein YP_219881.1 539172 R 218497 CDS YP_219882.1 62185097 3337591 complement(539818..542190) 1 NC_004552.2 Similar to Haemophilus influenzae protective surface antigen d15 precursor SWALL:D153_HAEIN (SWALL:O32629) (793 aa) fasta scores: E(): 5.6e-13, 23.23% id in 835 aa and to Xylella fastidiosa outer membrane antigen xf1046 SWALL:Q9PEI2 (EMBL:AE003941) (784 aa) fasta scores: E(): 5.8e-26, 23.37% id in 830 aa; hypothetical protein 542190 3337591 CAB468 Chlamydophila abortus S26/3 hypothetical protein YP_219882.1 539818 R 218497 CDS YP_219883.1 62185098 3338081 complement(542362..542964) 1 NC_004552.2 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 542964 recR 3338081 recR Chlamydophila abortus S26/3 recombination protein RecR YP_219883.1 542362 R 218497 CDS YP_219884.1 62185099 3338041 543078..544091 1 NC_004552.2 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 544091 fabH 3338041 fabH Chlamydophila abortus S26/3 3-oxoacyl-ACP synthase YP_219884.1 543078 D 218497 CDS YP_219885.1 62185100 3338038 544092..545018 1 NC_004552.2 Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 2.3e-32, 39.16% id in 286 aa, and to Bacillus subtilis malonyl CoA-acyl carrier protein transacylase fabD SWALL:FABD_BACSU (SWALL:P71019) (317 aa) fasta scores: E(): 2.8e-38, 42.23% id in 296 aa; ACP S-malonyltransferase 545018 fabD 3338038 fabD Chlamydophila abortus S26/3 ACP S-malonyltransferase YP_219885.1 544092 D 218497 CDS YP_219886.1 62185101 3338040 545023..545769 1 NC_004552.2 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 545769 fabG 3338040 fabG Chlamydophila abortus S26/3 3-ketoacyl-ACP reductase YP_219886.1 545023 D 218497 CDS YP_219887.1 62185102 3337972 545881..546117 1 NC_004552.2 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 546117 acpP 3337972 acpP Chlamydophila abortus S26/3 acyl carrier protein YP_219887.1 545881 D 218497 CDS YP_219888.1 62185103 3337592 complement(546253..546675) 1 NC_004552.2 Similar to several proposed regulatory proteins including: Anabaena sp. transcriptional regulator all1035 SWALL:Q8YY17 (EMBL:AP003584) (146 aa) fasta scores: E(): 2.1e-07, 27.82% id in 133 aa, and to Mycobacterium leprae Crp/Fnr-family transcriptional regulator ml2302 SWALL:Q9CB91 (EMBL:AL583925) (224 aa) fasta scores: E(): 9.9e-07, 29.68% id in 128 aa; Crp/Fnr family transcriptional regulator 546675 3337592 CAB474 Chlamydophila abortus S26/3 Crp/Fnr family transcriptional regulator YP_219888.1 546253 R 218497 CDS YP_219889.1 62185104 3337571 complement(546687..549464) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00489 SWALL:Q823D3 (EMBL:AE016995) (925 aa) fasta scores: E(): 0, 88.43% id in 925 aa; lipoprotein 549464 3337571 CAB475 Chlamydophila abortus S26/3 lipoprotein YP_219889.1 546687 R 218497 CDS YP_219890.1 62185105 3338002 complement(549568..550122) 1 NC_004552.2 Similar to Chlamydophila caviae inclusion membrane protein C IncC or cca00490 SWALL:O30783 (EMBL:AF017105) (186 aa) fasta scores: E(): 3.5e-45, 71.95% id in 189 aa; inclusion membrane protein C 550122 incC 3338002 incC Chlamydophila abortus S26/3 inclusion membrane protein C YP_219890.1 549568 R 218497 CDS YP_219891.1 62185106 3338001 complement(550159..550767) 1 NC_004552.2 Similar to Chlamydophila caviae inclusion membrane protein B IncB or cca00491 SWALL:O30782 (EMBL:AF017105) (198 aa) fasta scores: E(): 1.7e-37, 54.95% id in 202 aa; inclusion membrane protein B 550767 incB 3338001 incB Chlamydophila abortus S26/3 inclusion membrane protein B YP_219891.1 550159 R 218497 CDS YP_219892.1 62185107 3337572 complement(550853..552334) 1 NC_004552.2 Similar to Chlamydophila caviae sodium-dependent transporter NadT SWALL:O30781 (EMBL:AF017105) (386 aa) fasta scores: E(): 2.7e-125, 88.58% id in 368 aa and to Bacillus cereus sodium-dependent leucine transporter bc2170 SWALL:Q81E25 (EMBL:AE017005) (446 aa) fasta scores: E(): 1.8e-32, 30.68% id in 453 aa, and to Bacillus anthracis sodium-dependent transporter, ba2216 SWALL:Q81R42 (EMBL:AE017031) (446 aa) fasta scores: E(): 3.2e-32, 30.46% id in 453 aa; sodium symporter family membrane transport protein 552334 3337572 CAB478 Chlamydophila abortus S26/3 sodium symporter family membrane transport protein YP_219892.1 550853 R 218497 CDS YP_219893.1 62185108 3337573 complement(552340..553560) 1 NC_004552.2 Similar to Streptomyces coelicolor proton transport protein Sco4498 or scd35.05 SWALL:Q9L0U6 (EMBL:AL939120) (440 aa) fasta scores: E(): 1.6e-23, 29.47% id in 380 aa and to Vibrio vulnificus Na+/H+-dicarboxylate symporter vv21383 SWALL:Q8D4C3 (EMBL:AE016813) (434 aa) fasta scores: E(): 4.4e-23, 27.58% id in 406 aa; sodium symporter family membrane transport protein 553560 3337573 CAB479 Chlamydophila abortus S26/3 sodium symporter family membrane transport protein YP_219893.1 552340 R 218497 CDS YP_219894.1 62185109 3337574 553665..554843 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein cca00494 SWALL:Q823D1 (EMBL:AE016995) (388 aa) fasta scores: E(): 2.7e-128, 77.14% id in 385 aa; hypothetical protein 554843 3337574 CAB481 Chlamydophila abortus S26/3 hypothetical protein YP_219894.1 553665 D 218497 CDS YP_219895.1 62185110 3337575 555105..557237 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including:Chlamydophila caviae hypothetical protein cca00495 SWALL:Q823D0 (EMBL:AE016995) (710 aa) fasta scores: E(): 0, 82.53% id in 710 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 557237 3337575 CAB482 Chlamydophila abortus S26/3 hypothetical protein YP_219895.1 555105 D 218497 CDS YP_219896.1 62185111 3337576 557264..558676 1 NC_004552.2 Similar to many membrane transport proteins including: Bacillus halodurans magnesium transporter bh3224 SWALL:Q9K7Y3 (EMBL:AP001518) (454 aa) fasta scores: E(): 3e-33, 28.47% id in 460 aa, and to Chlamydophila caviae magnesium transporter MgtE or cca00496 SWALL:Q823C9 (EMBL:AE016995) (470 aa) fasta scores: E(): 8e-171, 98.5% id in 469 aa; magnesium transporter 558676 3337576 CAB483 Chlamydophila abortus S26/3 magnesium transporter YP_219896.1 557264 D 218497 CDS YP_219897.1 62185112 3337577 558816..560231 1 NC_004552.2 Similar in parts to Chlamydia pneumoniae hypothetical protein cpn0285 or cpj0285 or cp0473 SWALL:Q9Z8Q3 (EMBL:AE001613) (515 aa) fasta scores: E(): 7.8e-45, 30.97% id in 481 aa; hypothetical protein 560231 3337577 CAB484 Chlamydophila abortus S26/3 hypothetical protein YP_219897.1 558816 D 218497 CDS YP_219898.1 62185113 3337578 complement(560338..561738) 1 NC_004552.2 Similar to many amino acid transport proteins including: Lactococcus lactis glutamate/gamma-aminobutyrate antiporter GadC SWALL:GADC_LACLC (SWALL:O30417) (503 aa) fasta scores: E(): 5.5e-46, 30.67% id in 463 aa and Brucella melitensis glutamate/gamma-aminobutyrate antiporter bmeii0909 SWALL:Q8YBJ1 (EMBL:AE009724) (510 aa) fasta scores: E(): 1.2e-54, 34.34% id in 460 aa; amino acid permease 561738 3337578 CAB485 Chlamydophila abortus S26/3 amino acid permease YP_219898.1 560338 R 218497 CDS YP_219899.1 62185114 3338043 complement(561755..562804) 1 NC_004552.2 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 562804 fbaB 3338043 fbaB Chlamydophila abortus S26/3 fructose-bisphosphate aldolase YP_219899.1 561755 R 218497 CDS YP_219900.1 62185115 3337579 562974..564920 1 NC_004552.2 Weakly similar in parts to Chlamydia trachomatis hypothetical protein Ct214 SWALL:O84216 (EMBL:AE001295) (547 aa) fasta scores: E(): 0.017, 25.45% id in 444 aa; hypothetical protein 564920 3337579 CAB487 Chlamydophila abortus S26/3 hypothetical protein YP_219900.1 562974 D 218497 CDS YP_219901.1 62185116 3337580 565063..566088 1 NC_004552.2 Similar to several membrane transporters including: Bacillus halodurans ABC transporter bh3481 SWALL:Q9K789 (EMBL:AP001518) (338 aa) fasta scores: E(): 2e-33, 36.57% id in 309 aa and Xanthomonas axonopodis ABC transporter ATP-binding protein xac3669 SWALL:AAM38512 (EMBL:AE012017) (335 aa) fasta scores: E(): 3.8e-33, 35.11% id in 319 aa; ABC transporter, ATP-binding component 566088 3337580 CAB488 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219901.1 565063 D 218497 CDS YP_219902.1 62185117 3337581 566102..566767 1 NC_004552.2 Similar to several membrane transporters including: Yersinia pestis ABC transport integral membrane subunit Ypo1319 or y2865 SWALL:Q8ZGH8 (EMBL:AJ414147) (223 aa) fasta scores: E(): 2.9e-25, 37.2% id in 215 aa and Ralstonia solanacearum probable transmembrane ABC transporter protein Rsc0921 or Rs04492 SWALL:Q8Y0X2 (EMBL:AL646061) (217 aa) fasta scores: E(): 2.1e-22, 34.86% id in 218 aa; ABC transport integral membrane subunit 566767 3337581 CAB489 Chlamydophila abortus S26/3 ABC transport integral membrane subunit YP_219902.1 566102 D 218497 CDS YP_219903.1 62185118 3337582 566764..567567 1 NC_004552.2 Similar to many including: Pasteurella haemolytica outer membrane lipoprotein 3 precursor PlpC SWALL:PLPC_PASHA (SWALL:Q08870) (263 aa) fasta scores: E(): 2.5e-15, 29.47% id in 268 aa and Streptomyces coelicolor lipoprotein sco1557 or scl11.13C SWALL:Q9L1C5 (EMBL:AL939109) (275 aa) fasta scores: E(): 7.3e-25, 35.95% id in 267 aa; lipoprotein 567567 3337582 CAB490 Chlamydophila abortus S26/3 lipoprotein YP_219903.1 566764 D 218497 CDS YP_219904.1 62185119 3337583 567663..568217 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0277 or cpj0277 or cp0481 or cpb0285 SWALL:Q9Z8R1 (EMBL:AE001613) (169 aa) fasta scores: E(): 0.41, 25.19% id in 131 aa; hypothetical protein 568217 3337583 CAB491 Chlamydophila abortus S26/3 hypothetical protein YP_219904.1 567663 D 218497 CDS YP_219905.1 62185120 3337584 568471..568821 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct191 hypothetical protein cpn0276 or cpj0276 or cp0483 SWALL:Q9Z8R2 (EMBL:AE001612) (115 aa) fasta scores: E(): 5.2e-22, 56.89% id in 116 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 568821 3337584 CAB492 Chlamydophila abortus S26/3 hypothetical protein YP_219905.1 568471 D 218497 CDS YP_219906.1 62185121 3337991 568825..571245 1 NC_004552.2 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 571245 gyrB 3337991 gyrB Chlamydophila abortus S26/3 DNA gyrase subunit B YP_219906.1 568825 D 218497 CDS YP_219907.1 62185122 3337990 571261..573753 1 NC_004552.2 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 573753 gyrA 3337990 gyrA Chlamydophila abortus S26/3 DNA gyrase subunit A YP_219907.1 571261 D 218497 CDS YP_219908.1 62185123 3337585 573766..574401 1 NC_004552.2 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 574401 tmk 3337585 tmk Chlamydophila abortus S26/3 thymidylate kinase YP_219908.1 573766 D 218497 CDS YP_219909.1 62185124 3337586 574467..575267 1 NC_004552.2 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 575267 3337586 CAB496 Chlamydophila abortus S26/3 DNA polymerase III subunit delta' YP_219909.1 574467 D 218497 CDS YP_219910.1 62185125 3337587 complement(575244..575966) 1 NC_004552.2 Weakly similar to Homo sapiens lysophospholipase II Dj570f3.6 dj570f3.6 SWALL:Q9UGE0 (EMBL:AL050332) (231 aa) fasta scores: E(): 0.041, 26.96% id in 204 aa; hydrolase 575966 3337587 CAB497 Chlamydophila abortus S26/3 hydrolase YP_219910.1 575244 R 218497 CDS YP_219911.1 62185126 3337588 576242..577129 1 NC_004552.2 Weakly similar to many e.g. Clostridium perfringens hypothetical protein Cpe2200 SWALL:Q8XIC1 (EMBL:AP003193) (350 aa) fasta scores: E(): 1.6e-13, 32.35% id in 204 aa; hypothetical protein 577129 3337588 CAB498 Chlamydophila abortus S26/3 hypothetical protein YP_219911.1 576242 D 218497 CDS YP_219912.1 62185127 3337589 577126..578109 1 NC_004552.2 Similar to Brevibacillus borstelensis thermostable dipeptidase Bdp SWALL:Q9KH70 (EMBL:AF268476) (307 aa) fasta scores: E(): 6.3e-11, 26.8% id in 332 aa; hypothetical protein 578109 3337589 CAB499 Chlamydophila abortus S26/3 hypothetical protein YP_219912.1 577126 D 218497 CDS YP_219913.1 62185128 3337590 complement(578173..579273) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00513 SWALL:Q823B2 (EMBL:AE016995) (373 aa) fasta scores: E(): 1e-39, 51.05% id in 380 aa; hypothetical protein 579273 3337590 CAB500 Chlamydophila abortus S26/3 hypothetical protein YP_219913.1 578173 R 218497 CDS YP_219914.1 62185129 3337793 complement(579453..580553) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00514 SWALL:Q823B1 (EMBL:AE016995) (379 aa) fasta scores: E(): 1.4e-70, 58.31% id in 379 aa and to Chlamydia pneumoniae hypothetical protein cpb0274 SWALL:Q7VQ56 (EMBL:AE017157) (260 aa) fasta scores: E(): 4.6e-11, 28.27% id in 237 aa; hypothetical protein 580553 3337793 CAB501 Chlamydophila abortus S26/3 hypothetical protein YP_219914.1 579453 R 218497 CDS YP_219915.1 62185130 3337794 complement(580752..581432) 1 NC_004552.2 Weakly similar to Streptomyces coelicolor hypothetical protein Sco5140 or scp8.03 SWALL:Q9FBL8 (EMBL:AL939122) (252 aa) fasta scores: E(): 1.8e-11, 33.82% id in 204 aa; hypothetical protein 581432 3337794 CAB502 Chlamydophila abortus S26/3 hypothetical protein YP_219915.1 580752 R 218497 CDS YP_219916.1 62185131 3337795 581625..582524 1 NC_004552.2 UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 582524 ubiA 3337795 ubiA Chlamydophila abortus S26/3 prenyltransferase YP_219916.1 581625 D 218497 CDS YP_219917.1 62185132 3337796 582538..583116 1 NC_004552.2 Weakly similar to the C-terminus of Saccharomyces cerevisiae phenylacrylic acid decarboxylase pad1 or pof1 or ydr538W SWALL:PAD1_YEAST (SWALL:P33751) (242 aa) fasta scores: E(): 5.8e-24, 38.09% id in 189 aa. Also similar to several others for which function has to be fully defined e.g. Bacillus firmus probable aromatic acid decarboxylase SWALL:PAAD_BACFI (SWALL:P94300) (200 aa) fasta scores: E(): 2.3e-27, 44.89% id in 196 aa; aromatic acid decarboxylase 583116 3337796 CAB504 Chlamydophila abortus S26/3 aromatic acid decarboxylase YP_219917.1 582538 D 218497 CDS YP_219918.1 62185133 3337797 complement(583113..584006) 1 NC_004552.2 Similar to many proteins of undefined function including: Bacillus cereus hypothetical membrane spanning protein Bc4280 SWALL:Q812T4 (EMBL:AE017011) (292 aa) fasta scores: E(): 7.2e-35, 39.56% id in 278 aa and Listeria monocytogenes, Listeria innocua hypothetical protein Lmo1385 or lin1422 SWALL:Q92BX0 (EMBL:AL591978) (308 aa) fasta scores: E(): 5.7e-28, 37.24% id in 290 aa; lipoprotein 584006 3337797 CAB505 Chlamydophila abortus S26/3 lipoprotein YP_219918.1 583113 R 218497 CDS YP_219919.1 62185134 3337798 complement(584563..585399) 1 NC_004552.2 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 585399 surE 3337798 surE Chlamydophila abortus S26/3 stationary phase survival protein SurE YP_219919.1 584563 R 218497 CDS YP_219920.1 62185135 3337799 complement(585446..586210) 1 NC_004552.2 Similar to Rhizobium loti hypothetical protein Mlr0047 SWALL:Q98NP4 (EMBL:AP002994) (271 aa) fasta scores: E(): 4.8e-17, 35.15% id in 219 aa and to Xylella fastidiosa hypothetical protein Xf0569 xf0569 SWALL:Q9PFT8 (EMBL:AE003903) (312 aa) fasta scores: E(): 8.4e-17, 34.34% id in 230 aa; hypothetical protein 586210 3337799 CAB507 Chlamydophila abortus S26/3 hypothetical protein YP_219920.1 585446 R 218497 CDS YP_219921.1 62185136 3337800 586338..586811 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae protein translocase subunit seca_1 or cpn0260 SWALL:Q9Z8S8 (EMBL:AE001611) (166 aa) fasta scores: E(): 1.4e-30, 56.62% id in 166 aa; hypothetical protein 586811 3337800 CAB508 Chlamydophila abortus S26/3 hypothetical protein YP_219921.1 586338 D 218497 CDS YP_219922.1 62185137 3337801 587186..588019 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including:Chlamydia muridarum hypothetical protein Tc0419 tc0419 SWALL:Q9PKP6 (EMBL:AE002308) (280 aa) fasta scores: E(): 2.3e-36, 41.25% id in 286 aa; hypothetical protein 588019 3337801 CAB509 Chlamydophila abortus S26/3 hypothetical protein YP_219922.1 587186 D 218497 CDS YP_219923.1 62185138 3337802 588022..588867 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia trachomatis hypothetical protein Ct143 SWALL:O84145 (EMBL:AE001287) (280 aa) fasta scores: E(): 1.9e-39, 45.07% id in 264 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 588867 3337802 CAB510 Chlamydophila abortus S26/3 hypothetical protein YP_219923.1 588022 D 218497 CDS YP_219924.1 62185139 3337803 588871..589692 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct144 hypothetical protein_3 cpn0256 or cpj0256 or cp0505 SWALL:Q9Z8T0 (EMBL:AE001611) (289 aa) fasta scores: E(): 2e-38, 38.88% id in 288 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 589692 3337803 CAB511 Chlamydophila abortus S26/3 hypothetical protein YP_219924.1 588871 D 218497 CDS YP_219925.1 62185140 3337804 complement(589717..591099) 1 NC_004552.2 Similar to Clostridium acetobutylicum predicted Fe-S oxidoreductase Cac1813 SWALL:Q97I40 (EMBL:AE007690) (445 aa) fasta scores: E(): 3.8e-58, 38.03% id in 447 aa and Salmonella typhi hypothetical protein YliG or sty0891 or t2037 SWALL:Q8Z861 (EMBL:AL627268) (441 aa) fasta scores: E(): 2.7e-50, 38.24% id in 455 aa. Note the differing N-termini when compared to other Chlamyidaceae orthologues.; hypothetical protein 591099 3337804 CAB512 Chlamydophila abortus S26/3 hypothetical protein YP_219925.1 589717 R 218497 CDS YP_219926.1 62185141 3338097 591198..591356 1 NC_004552.2 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 591356 rpmG 3338097 rpmG Chlamydophila abortus S26/3 50S ribosomal protein L33 YP_219926.1 591198 D 218497 CDS YP_219927.1 62185142 3337452 591406..592917 1 NC_004552.2 Similar to several including: Chlamydia pneumoniae ct151 hypothetical protein Cpn0249 SWALL:Q9Z8T5 (EMBL:AE001610) (503 aa) fasta scores: E(): 8.1e-129, 65.4% id in 503 aa and Haemophilus influenzae lipoprotein releasing system transmembrane protein LolC or hi1548 SWALL:LOLE_HAEIN (SWALL:P44250) (416 aa) fasta scores: E(): 4.8e-08, 24.1% id in 336 aa; lipoprotein releasing system transmembrane protein 592917 lolC 3337452 lolC Chlamydophila abortus S26/3 lipoprotein releasing system transmembrane protein YP_219927.1 591406 D 218497 CDS YP_219928.1 62185143 3337453 592920..593591 1 NC_004552.2 Similar to Escherichia coli lipoprotein releasing system ATP-binding protein LolD or b1117 SWALL:LOLD_ECOLI (SWALL:P75957) (233 aa) fasta scores: E(): 2e-29, 46.63% id in 223 aa, and to Haemophilus influenzae lipoprotein releasing system ATP-binding protein LolD or hi1549 SWALL:LOLD_HAEIN (SWALL:P45247) (227 aa) fasta scores: E(): 1.8e-30, 46.18% id in 223 aa; lipoprotein releasing system ATP-binding protein 593591 lolD 3337453 lolD Chlamydophila abortus S26/3 lipoprotein releasing system ATP-binding protein YP_219928.1 592920 D 218497 CDS YP_219929.1 62185144 3337485 595365..595817 1 NC_004552.2 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 595817 rplM 3337485 rplM Chlamydophila abortus S26/3 50S ribosomal protein L13 YP_219929.1 595365 D 218497 CDS YP_219930.1 62185145 3338111 595831..596232 1 NC_004552.2 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 596232 rpsI 3338111 rpsI Chlamydophila abortus S26/3 30S ribosomal protein S9 YP_219930.1 595831 D 218497 CDS YP_219931.1 62185146 3337806 complement(596358..597209) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae polysaccharide hydrolase-invasin repeat family protein YdhO or cpn0245 or cp0517 SWALL:Q9Z8T9 (EMBL:AE001610) (285 aa) fasta scores: E(): 2.1e-48, 44.94% id in 287 aa; hypothetical protein 597209 3337806 CAB520 Chlamydophila abortus S26/3 hypothetical protein YP_219931.1 596358 R 218497 CDS YP_219932.1 62185147 3337254 complement(597264..597905) 1 NC_004552.2 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 597905 adk 3337254 adk Chlamydophila abortus S26/3 adenylate kinase YP_219932.1 597264 R 218497 CDS YP_219933.1 62185148 3337807 598187..599320 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00536 SWALL:Q822Z0 (EMBL:AE016996) (374 aa) fasta scores: E(): 6.9e-58, 48.79% id in 373 aa and to Chlamydia pneumoniae hypothetical protein Cpj0241 cpj0241 SWALL:Q9JSH3 (EMBL:AP002545) (384 aa) fasta scores: E(): 0.0044, 21.6% id in 250 aa; hypothetical protein 599320 3337807 CAB522 Chlamydophila abortus S26/3 hypothetical protein YP_219933.1 598187 D 218497 CDS YP_219934.1 62185149 3337808 599337..599750 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00537 SWALL:Q822Y9 (EMBL:AE016996) (140 aa) fasta scores: E(): 3.5e-32, 57.14% id in 140 aa, and to Chlamydia pneumoniae hypothetical protein cpn0242 cpn0242 or cpj0242 or cp0520 or cpb0248 SWALL:Q9Z8U2 (EMBL:AE001610) (144 aa) fasta scores: E(): 0.033, 25.35% id in 142 aa; hypothetical protein 599750 3337808 CAB523 Chlamydophila abortus S26/3 hypothetical protein YP_219934.1 599337 D 218497 CDS YP_219935.1 62185150 3337809 599869..601005 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00538 SWALL:Q822Y8 (EMBL:AE016996) (373 aa) fasta scores: E(): 4e-61, 48.94% id in 380 aa; hypothetical protein 601005 3337809 CAB524 Chlamydophila abortus S26/3 hypothetical protein YP_219935.1 599869 D 218497 CDS YP_219936.1 62185151 3337663 complement(601041..601817) 1 NC_004552.2 catalyzes the formation of 6-phospho-D-gluconate from 6-phospho-D-glucono-1,5-lactone; 6-phosphogluconolactonase 601817 pgl 3337663 pgl Chlamydophila abortus S26/3 6-phosphogluconolactonase YP_219936.1 601041 R 218497 CDS YP_219937.1 62185152 3338245 complement(601841..603406) 1 NC_004552.2 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 603406 zwf 3338245 zwf Chlamydophila abortus S26/3 glucose-6-phosphate 1-dehydrogenase YP_219937.1 601841 R 218497 CDS YP_219938.1 62185153 3337810 complement(603587..605173) 1 NC_004552.2 Similar to Bacillus subtilis oligopeptide-binding protein OppA or Spo0ka or Bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 1.3e-42, 29.72% id in 508 aa and Chlamydia trachomatis oligopeptide binding protein Oppa_3 or ct198 SWALL:O84201 (EMBL:AE001293) (518 aa) fasta scores: E(): 2.6e-94, 51.58% id in 537 aa. Note the large overpal with CAB527 and the alternative possible translational start site at codon 19; membrane transport protein, solute-binding component 605173 3337810 CAB527 Chlamydophila abortus S26/3 membrane transport protein, solute-binding component YP_219938.1 603587 R 218497 CDS YP_219939.1 62185154 3337811 complement(605119..606153) 1 NC_004552.2 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 606153 3337811 CAB528 Chlamydophila abortus S26/3 DNA-binding/iron metalloprotein/AP endonuclease YP_219939.1 605119 R 218497 CDS YP_219940.1 62185155 3337812 606725..607372 1 NC_004552.2 Similar to many membrane transport proteins including: Pseudomonas aeruginosa probable permease of ABC transporter Pa0313 SWALL:Q9I6H8 (EMBL:AE004469) (230 aa) fasta scores: E(): 4.8e-25, 35.64% id in 202 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease yecs yecs or b1918 or c2332 or sf1961 or s2057 SWALL:YECS_ECOLI (SWALL:P76315) (222 aa) fasta scores: E(): 6.3e-23, 36.94% id in 203 aa; ABC transporter, membrane permease 607372 3337812 CAB530 Chlamydophila abortus S26/3 ABC transporter, membrane permease YP_219940.1 606725 D 218497 CDS YP_219941.1 62185156 3337813 607369..608049 1 NC_004552.2 Similar to Corynebacterium glutamicum ABC-type transporter, ATPase component Cgl1222 SWALL:BAB98615 (EMBL:AP005277) (243 aa) fasta scores: E(): 4e-16, 37.31% id in 201 aa and Clostridium acetobutylicum amino acid ABC-type transporter, ATPase component Cac3327 SWALL:Q97DZ3 (EMBL:AE007829) (247 aa) fasta scores: E(): 4.6e-16, 38.63% id in 220 aa; ABC transporter, ATP-binding component 608049 3337813 CAB531 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219941.1 607369 D 218497 CDS YP_219942.1 62185157 3337814 complement(608106..609452) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0190/cp0577/cpj0190 cpn0190 or cp0577 or cpj0190 SWALL:Y190_CHLPN (SWALL:Q9Z8Z4) (452 aa) fasta scores: E(): 4.6e-56, 39.01% id in 446 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 609452 3337814 CAB532 Chlamydophila abortus S26/3 hypothetical protein YP_219942.1 608106 R 218497 CDS YP_219943.1 62185158 3337815 complement(609571..612990) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae hypothetical protein Cp0578 SWALL:Q9K243 (EMBL:AE002216) (1142 aa) fasta scores: E(): 0, 62.25% id in 1134 aa; hypothetical protein 612990 3337815 CAB533 Chlamydophila abortus S26/3 hypothetical protein YP_219943.1 609571 R 218497 CDS YP_219944.1 62185159 3337816 complement(612987..614279) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydia pneumoniae ct132 hypothetical protein Cpn0188 SWALL:Q9Z8Z6 (EMBL:AE001605) (430 aa) fasta scores: E(): 4.4e-118, 66.97% id in 430 aa. Note contains a protein motif similar to the Ribonuclease BN-like family of proteins.; hypothetical protein 614279 3337816 CAB534 Chlamydophila abortus S26/3 hypothetical protein YP_219944.1 612987 R 218497 CDS YP_219945.1 62185160 3337817 complement(614359..615237) 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae strain GpiC inclusion membrane localised protein Cca00549 SWALL:Q46211 (EMBL:L35036) (270 aa) fasta scores: E(): 3.9e-89, 77.86% id in 271 aa. Contains an N-terminal hydrophobic domain; hypothetical protein 615237 3337817 CAB535 Chlamydophila abortus S26/3 hypothetical protein YP_219945.1 614359 R 218497 CDS YP_219946.1 62185161 3338000 complement(615254..616396) 1 NC_004552.2 Similar to Chlamydophila caviae inclusion membrane localised protein IncA or cca00550 SWALL:Q46210 (EMBL:L35036) (355 aa) fasta scores: E(): 2e-48, 46.72% id in 351 aa; inclusion membrane protein 616396 incA 3338000 incA Chlamydophila abortus S26/3 inclusion membrane protein YP_219946.1 615254 R 218497 CDS YP_219947.1 62185162 3337818 616790..617485 1 NC_004552.2 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 617485 3337818 CAB537 Chlamydophila abortus S26/3 ribulose-phosphate 3-epimerase YP_219947.1 616790 D 218497 CDS YP_219948.1 62185163 3337819 617472..618029 1 NC_004552.2 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 618029 3337819 CAB538 Chlamydophila abortus S26/3 elongation factor P YP_219948.1 617472 D 218497 CDS YP_219949.2 161501894 3337820 618061..618561 1 NC_004552.2 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 618561 3337820 CAB539 Chlamydophila abortus S26/3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_219949.2 618061 D 218497 CDS YP_219950.1 62185165 3337971 618561..619916 1 NC_004552.2 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 619916 accC 3337971 accC Chlamydophila abortus S26/3 acetyl-CoA carboxylase biotin carboxylase subunit YP_219950.1 618561 D 218497 CDS YP_219951.1 62185166 3337823 complement(623263..624252) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00557 SWALL:Q822X1 (EMBL:AE016996) (328 aa) fasta scores: E(): 8.9e-41, 44% id in 325 aa; hypothetical protein 624252 3337823 CAB545 Chlamydophila abortus S26/3 hypothetical protein YP_219951.1 623263 R 218497 CDS YP_219952.1 62185167 3337824 complement(624804..625427) 1 NC_004552.2 Weakly similar in parts to Arabidopsis thaliana bzip transcription factor at2g13150 SWALL:Q9SL54 (EMBL:AC006194) (262 aa) fasta scores: E(): 4.6, 28.48% id in 172 aa; hypothetical protein 625427 3337824 CAB546 Chlamydophila abortus S26/3 hypothetical protein YP_219952.1 624804 R 218497 CDS YP_219953.1 62185168 3337825 complement(625420..625704) 1 NC_004552.2 hypothetical protein 625704 3337825 CAB547 Chlamydophila abortus S26/3 hypothetical protein YP_219953.1 625420 R 218497 CDS YP_219954.1 62185169 3337711 complement(625937..626617) 1 NC_004552.2 Similar to regions within the Chlamydia muridarum MAC/perforin family protein tc0431 SWALL:Q9PKN4 (EMBL:AE002310) (809 aa) fasta scores: E(): 2.7e-24, 46.07% id in 191 aa. Note the high number of Val residues; hypothetical protein 626617 3337711 CAB548 Chlamydophila abortus S26/3 hypothetical protein YP_219954.1 625937 R 218497 CDS YP_219955.1 62185170 3337712 complement(626920..628488) 1 NC_004552.2 Very low sequence similarity in parts to Chlamydophila caviae hypothetical protein CCA00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 4.4e-08, 28.06% id in 253 aa, and to Chlamydia pneumoniae hypothetical protein CPN0355 SWALL:Q9Z8I8 (EMBL:AE001619) (433 aa) fasta scores: E(): 0.00062, 25.61% id in 246 aa; hypothetical protein 628488 3337712 CAB549 Chlamydophila abortus S26/3 hypothetical protein YP_219955.1 626920 R 218497 CDS YP_219956.1 62185171 3337713 complement(628495..628794) 1 NC_004552.2 hypothetical protein 628794 3337713 CAB550 Chlamydophila abortus S26/3 hypothetical protein YP_219956.1 628495 R 218497 CDS YP_219957.1 62185172 3337714 complement(630197..631030) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00575 SWALL:Q822V4 (EMBL:AE016996) (294 aa) fasta scores: E(): 8e-75, 63.17% id in 277 aa, and to Chlamydia pneumoniae hypothetical protein CPN0177 or CPJ0177 or CP0592 SWALL:Q9Z907 (EMBL:AE001604) (284 aa) fasta scores: E(): 1.3e-42, 44.07% id in 270 aa; lipoprotein 631030 3337714 CAB553 Chlamydophila abortus S26/3 lipoprotein YP_219957.1 630197 R 218497 CDS YP_219958.1 62185173 3337715 631498..631965 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00576 SWALL:Q822V3 (EMBL:AE016996) (170 aa) fasta scores: E(): 1e-28, 63.75% id in 149 aa, and to Chlamydia pneumoniae hypothetical protein CPN0174 or CPJ0174 SWALL:Q9Z910 (EMBL:AE001604) (156 aa) fasta scores: E(): 4.2e-13, 39.04% id in 146 aa; hypothetical protein 631965 3337715 CAB554 Chlamydophila abortus S26/3 hypothetical protein YP_219958.1 631498 D 218497 CDS YP_219959.1 62185174 3337717 633304..633768 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00579 SWALL:Q822V0 (EMBL:AE016996) (148 aa) fasta scores: E(): 4e-11, 40.6% id in 133 aa, and to Chlamydia pneumoniae hypothetical protein CPJ0223 SWALL:Q9JSH5 (EMBL:AP002545) (126 aa) fasta scores: E(): 4.3e-08, 39.51% id in 124 aa; hypothetical protein 633768 3337717 CAB557 Chlamydophila abortus S26/3 hypothetical protein YP_219959.1 633304 D 218497 CDS YP_219960.1 62185175 3337718 634193..634864 1 NC_004552.2 Similar to Staphylococcus aureus hypothetical protein SAV1432 or SA1265 or MW1321 SWALL:Q99U56 (EMBL:AP003362) (234 aa) fasta scores: E(): 9e-13, 28.38% id in 229 aa, and to Bacillus subtilis hypothetical protein YpdP or BSU21980 SWALL:YPDP_BACSU (SWALL:P54163) (229 aa) fasta scores: E(): 6.2e-10, 27.52% id in 218 aa; hypothetical protein 634864 3337718 CAB558 Chlamydophila abortus S26/3 hypothetical protein YP_219960.1 634193 D 218497 CDS YP_219961.1 62185176 3337719 635042..636160 1 NC_004552.2 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 636160 3337719 CAB559 Chlamydophila abortus S26/3 queuine tRNA-ribosyltransferase YP_219961.1 635042 D 218497 CDS YP_219962.1 62185177 3337720 636396..636842 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00582 SWALL:Q822U7 (EMBL:AE016996) (148 aa) fasta scores: E(): 7.1e-45, 72.97% id in 148 aa, and to Chlamydia pneumoniae hypothetical protein CPN0221 or CPJ0221 or CP0544 SWALL:Q9Z8W3 (EMBL:AE001608) (136 aa) fasta scores: E(): 3.1e-12, 39.09% id in 110 aa; hypothetical protein 636842 3337720 CAB560 Chlamydophila abortus S26/3 hypothetical protein YP_219962.1 636396 D 218497 CDS YP_219963.1 62185178 3337721 637249..637713 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00583 SWALL:Q822U6 (EMBL:AE016996) (155 aa) fasta scores: E(): 1.7e-36, 59.74% id in 154 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein CPB0228 SWALL:AAP98161 (EMBL:AE017157) (126 aa) fasta scores: E(): 8.2e-12, 39.85% id in 133 aa; hypothetical protein 637713 3337721 CAB560A Chlamydophila abortus S26/3 hypothetical protein YP_219963.1 637249 D 218497 CDS YP_219964.1 62185179 3337723 complement(638785..639195) 1 NC_004552.2 Similar to Bacillus subtilis disulfide bond formation protein C BdbC or Bsu33470 SWALL:BDBC_BACSU (SWALL:O32217) (138 aa) fasta scores: E(): 3.1e-14, 40.79% id in 125 aa and to Coxiella burnetii probable disulfide formation protein Cbu0888 SWALL:BDBC_COXBU (SWALL:Q83D55) (147 aa) fasta scores: E(): 1.3e-20, 48.12% id in 133 aa; disulfide oxidoreductase 639195 3337723 CAB562 Chlamydophila abortus S26/3 disulfide oxidoreductase YP_219964.1 638785 R 218497 CDS YP_219965.1 62185180 3337724 complement(639188..639886) 1 NC_004552.2 Similar to Coxiella burnetii hypothetical protein Cbu0889 SWALL:Q83D54 (EMBL:AE016962) (218 aa) fasta scores: E(): 1.2e-10, 33.18% id in 220 aa and to Vibrio parahaemolyticus membrane protein Vpa0994 SWALL:Q87HH1 (EMBL:AP005087) (262 aa) fasta scores: E(): 8.1e-05, 25.98% id in 204 aa; hypothetical protein 639886 3337724 CAB563 Chlamydophila abortus S26/3 hypothetical protein YP_219965.1 639188 R 218497 CDS YP_219966.1 62185181 3337725 640014..641312 1 NC_004552.2 Similar to several Chlamydia proteins of undefined function including: Chlamydophila caviae hypothetical protein Cca00590 SWALL:Q822T9 (EMBL:AE016996) (408 aa) fasta scores: E(): 3.2e-146, 84.31% id in 408 aa; hypothetical protein 641312 3337725 CAB564 Chlamydophila abortus S26/3 hypothetical protein YP_219966.1 640014 D 218497 CDS YP_219967.1 62185182 3337726 complement(641326..642030) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00591 SWALL:Q822T8 (EMBL:AE016996) (235 aa) fasta scores: E(): 3.4e-53, 64.25% id in 235 aa, and to Chlamydia pneumoniae CT179 hypothetical protein CPN0230 or CPJ0230 SWALL:Q9Z8V4 (EMBL:AE001609) (226 aa) fasta scores: E(): 2.7e-26, 38.46% id in 221 aa; hypothetical protein 642030 3337726 CAB565 Chlamydophila abortus S26/3 hypothetical protein YP_219967.1 641326 R 218497 CDS YP_219968.1 62185183 3337423 complement(642015..642722) 1 NC_004552.2 Similar to many including: Bacillus anthracis ABC transporter, ATP-binding protein Ba0383 SWALL:Q81Z89 (EMBL:AE017025) (249 aa) fasta scores: E(): 6.9e-21, 36.63% id in 202 aa, and to Streptomyces avermitilis ABC transporter ATP-binding protein sav1340 SWALL:Q82NG3 (EMBL:AP005026) (275 aa) fasta scores: E(): 2.3e-20, 36.98% id in 219 aa; ABC transporter, ATP-binding component 642722 3337423 CAB566 Chlamydophila abortus S26/3 ABC transporter, ATP-binding component YP_219968.1 642015 R 218497 CDS YP_219969.1 62185184 3337876 complement(644069..644761) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein Cca00595 SWALL:Q822T4 (EMBL:AE016996) (229 aa) fasta scores: E(): 1.1e-81, 89.56% id in 230 aa; hypothetical protein 644761 3337876 CAB568 Chlamydophila abortus S26/3 hypothetical protein YP_219969.1 644069 R 218497 CDS YP_219970.1 62185185 3337877 644927..645691 1 NC_004552.2 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 645691 3337877 CAB569 Chlamydophila abortus S26/3 3-deoxy-manno-octulosonate cytidylyltransferase YP_219970.1 644927 D 218497 CDS YP_219971.1 62185186 3337638 645667..647280 1 NC_004552.2 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 647280 pyrG 3337638 pyrG Chlamydophila abortus S26/3 CTP synthetase YP_219971.1 645667 D 218497 CDS YP_219972.1 62185187 3338198 647273..647725 1 NC_004552.2 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 647725 ruvX 3338198 ruvX Chlamydophila abortus S26/3 Holliday junction resolvase-like protein YP_219972.1 647273 D 218497 CDS YP_219973.1 62185188 3337878 647973..649313 1 NC_004552.2 Similar to Bacillus subtilis oligopeptide-binding protein precursor OppA or spo0ka or bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 1.3e-07, 26.23% id in 446 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein cca00599 SWALL:Q822T0 (EMBL:AE016996) (445 aa) fasta scores: E(): 9.6e-152, 81.16% id in 446 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 dipeptide-binding protein fnv1219 SWALL:EAA24064 (EMBL:AABF01000057) (474 aa) fasta scores: E(): 2e-12, 26.73% id in 389 aa; ABC transporter peptide periplasmic binding lipoprotein 649313 3337878 CAB572 Chlamydophila abortus S26/3 ABC transporter peptide periplasmic binding lipoprotein YP_219973.1 647973 D 218497 CDS YP_219974.1 62185189 3337879 649430..651037 1 NC_004552.2 Similar to Bacillus subtilis dipeptide-binding protein DppE precursor or DcIAE or bsu12960 SWALL:DPPE_BACSU (SWALL:P26906) (543 aa) fasta scores: E(): 7.3e-37, 26.25% id in 518 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein, cca00600 SWALL:Q822S9 (EMBL:AE016996) (535 aa) fasta scores: E(): 5.1e-170, 79.77% id in 534 aa, and to Rhizobium meliloti oligopeptide ABC transporter OppA or rb0861 or smb21196 SWALL:Q9AKR0 (EMBL:AJ296269) (532 aa) fasta scores: E(): 6.2e-37, 28.98% id in 514 aa. Note this CDS is also similar to the downstream CDS CAB574 51 % identity (51.357% ungapped) in 523 aa overlap; ABC transporter peptide periplasmic-binding lipoprotein 651037 3337879 CAB573 Chlamydophila abortus S26/3 ABC transporter peptide periplasmic-binding lipoprotein YP_219974.1 649430 D 218497 CDS YP_219975.1 62185190 3337880 651242..652834 1 NC_004552.2 Similar to Bacillus subtilis oligopeptide-binding protein OppA precursor or spo0ka or bsu11430 SWALL:OPPA_BACSU (SWALL:P24141) (545 aa) fasta scores: E(): 4.8e-37, 25.88% id in 537 aa, and to Chlamydophila caviae peptide ABC transporter, periplasmic binding protein OppA or cca00601 SWALL:Q822S8 (EMBL:AE016996) (545 aa) fasta scores: E(): 5.6e-170, 80.18% id in 530 aa, and to Thermoanaerobacter tengcongensis ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components OppA6 or tte0611 SWALL:Q8RC37 (EMBL:AE013030) (547 aa) fasta scores: E(): 3.6e-37, 28.99% id in 545 aa. Note this CDS is also similar to the upstream CDS CAB573 51 % identity (51.357% ungapped) in 523 aa overlap; peptide ABC transporter substrate-binding protein 652834 3337880 CAB574 Chlamydophila abortus S26/3 peptide ABC transporter substrate-binding protein YP_219975.1 651242 D 218497 CDS YP_219976.1 62185191 3337881 653061..654032 1 NC_004552.2 Similar to Bacillus subtilis oligopeptide transport system permease OppB or Spo0kb or bsu11440 SWALL:OPPB_BACSU (SWALL:P24138) (311 aa) fasta scores: E(): 7.6e-49, 43.64% id in 307 aa, and to Chlamydophila caviae peptide ABC transporter, permease cca00602 SWALL:Q822S7 (EMBL:AE016996) (327 aa) fasta scores: E(): 3.9e-116, 94.42% id in 323 aa, and to Bacillus anthracis oligopeptide ABC transporter, permease ba0185 SWALL:Q81VL2 (EMBL:AE017024) (307 aa) fasta scores: E(): 1.5e-49, 43.93% id in 305 aa; peptide ABC transport system permease 654032 3337881 CAB575 Chlamydophila abortus S26/3 peptide ABC transport system permease YP_219976.1 653061 D 218497 CDS YP_219977.1 62185192 3337882 654092..654958 1 NC_004552.2 Similar to Bacillus subtilis oligopeptide transport system permease OppC or spo0kc or bsu11450 SWALL:OPPC_BACSU (SWALL:P24139) (305 aa) fasta scores: E(): 2.8e-39, 39.03% id in 269 aa, and to Chlamydophila caviae peptide ABC transporter, permease OppC_1 or cca00603 SWALL:Q822S6 (EMBL:AE016996) (302 aa) fasta scores: E(): 1.1e-103, 93.7% id in 286 aa, and to Thermoanaerobacter tengcongensis ABC-type dipeptide/oligopeptide/nickel transport systems, permease components DppC4 or tte0613 SWALL:Q8RC35 (EMBL:AE013030) (305 aa) fasta scores: E(): 1.3e-40, 41.44% id in 263 aa; peptide ABC transport system permease 654958 3337882 CAB576 Chlamydophila abortus S26/3 peptide ABC transport system permease YP_219977.1 654092 D 218497 CDS YP_219978.1 62185193 3337883 654951..655817 1 NC_004552.2 Similar to Bacillus thuringiensis oligopeptide transporter OppD SWALL:Q9F5U3 (EMBL:AF305387) (347 aa) fasta scores: E(): 6.3e-36, 41.53% id in 260 aa, and to Chlamydophila caviae peptide ABC transporter, ATP-binding protein OppD or cca00604 SWALL:Q822S5 (EMBL:AE016996) (288 aa) fasta scores: E(): 5e-93, 90.62% id in 288 aa, and to Staphylococcus aureus oligopeptide transport ATP-binding protein OppF or mw0181 SWALL:Q8NYL2 (EMBL:AP004822) (530 aa) fasta scores: E(): 2.6e-38, 42.53% id in 268 aa; peptide ABC transporter 655817 3337883 CAB577 Chlamydophila abortus S26/3 peptide ABC transporter YP_219978.1 654951 D 218497 CDS YP_219979.1 62185194 3337884 655810..656595 1 NC_004552.2 Similar to Lactobacillus delbrueckii ATP-binding protein oligopeptide transporter OppF SWALL:Q8VPJ1 (EMBL:AY040221) (318 aa) fasta scores: E(): 7.9e-26, 35.04% id in 234 aa, and to Chlamydophila caviae peptide ABC transporter, ATP-binding protein cca00605 SWALL:Q822S4 (EMBL:AE016996) (261 aa) fasta scores: E(): 4.9e-85, 90.03% id in 261 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 2.2e-28, 38.86% id in 229 aa; peptide ATP-binding component of ABC transporter 656595 3337884 CAB578 Chlamydophila abortus S26/3 peptide ATP-binding component of ABC transporter YP_219979.1 655810 D 218497 CDS YP_219980.1 62185195 3337424 656884..657639 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00606 SWALL:Q822S3 (EMBL:AE016996) (251 aa) fasta scores: E(): 4e-91, 95.21% id in 251 aa, and to Chlamydia pneumoniae hypothetical protein cpn0206/cp0561/cpj0206 SWALL:Y206_CHLPN (SWALL:Q9Z8X8) (251 aa) fasta scores: E(): 2.3e-78, 82.47% id in 251 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0210 SWALL:AAP98143 (EMBL:AE017157) (251 aa) fasta scores: E(): 2.3e-78, 82.47% id in 251 aa; hypothetical protein 657639 3337424 CAB579 Chlamydophila abortus S26/3 hypothetical protein YP_219980.1 656884 D 218497 CDS YP_219981.1 62185196 3338074 657686..659098 1 NC_004552.2 Similar to Bacillus subtilis YflS protein SWALL:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 1e-99, 52.25% id in 465 aa, and to Chlamydophila caviae sodium:sulfate symporter family protein cca00607 SWALL:Q822S2 (EMBL:AE016996) (470 aa) fasta scores: E(): 1.2e-175, 94.24% id in 469 aa; sodium:sulfate symporter 659098 3338074 CAB580 Chlamydophila abortus S26/3 sodium:sulfate symporter YP_219981.1 657686 D 218497 CDS YP_219982.1 62185197 3338075 659209..660867 1 NC_004552.2 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 660867 3338075 CAB581 Chlamydophila abortus S26/3 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_219982.1 659209 D 218497 CDS YP_219983.1 62185198 3337425 661026..661802 1 NC_004552.2 Similar to Chlamydophila caviae dienelactone hydrolase cca00609 SWALL:Q822S0 (EMBL:AE016996) (270 aa) fasta scores: E(): 3.1e-87, 78.14% id in 270 aa, and to Chlamydia pneumoniae predicted acyltransferase cpn0161 or cpj0161 or cp0610 SWALL:Q9Z923 (EMBL:AE001603) (275 aa) fasta scores: E(): 1.5e-43, 47.72% id in 264 aa, and to Chlamydophila pneumoniae TW-183 cinnamoyl ester hydrolase CinI or cpb0162 SWALL:AAP98095 (EMBL:AE017157) (275 aa) fasta scores: E(): 1.5e-43, 47.72% id in 264 aa; ester hydrolase 661802 3337425 CAB582 Chlamydophila abortus S26/3 ester hydrolase YP_219983.1 661026 D 218497 CDS YP_219984.1 62185199 3338167 661812..663437 1 NC_004552.2 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 663437 3338167 CAB583 Chlamydophila abortus S26/3 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_219984.1 661812 D 218497 CDS YP_219985.1 62185200 3337984 complement(663711..664946) 1 NC_004552.2 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 664946 gseA 3337984 gseA Chlamydophila abortus S26/3 3-deoxy-D-manno-octulosonic-acid transferase YP_219985.1 663711 R 218497 CDS YP_219986.1 62185201 3337448 complement(665009..667471) 1 NC_004552.2 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 667471 leuS 3337448 leuS Chlamydophila abortus S26/3 leucyl-tRNA synthetase YP_219986.1 665009 R 218497 CDS YP_219987.1 62185202 3338168 667702..668649 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00614 SWALL:Q822R5 (EMBL:AE016996) (315 aa) fasta scores: E(): 7.3e-104, 81.02% id in 311 aa, and to Chlamydia pneumoniae ct149 hypothetical protein cpn0152 SWALL:Q9Z931 (EMBL:AE001602) (316 aa) fasta scores: E(): 7e-67, 52.88% id in 312 aa; hypothetical protein 668649 3338168 CAB586 Chlamydophila abortus S26/3 hypothetical protein YP_219987.1 667702 D 218497 CDS YP_219988.1 62185203 3338169 668791..670311 1 NC_004552.2 Similar to Sphingobium chlorophenolicum pentachlorophenol 4-monooxygenase PcpB SWALL:PCPB_SPHCR (SWALL:P42535) (537 aa) fasta scores: E(): 1.8e-08, 22.07% id in 453 aa, and to Chlamydophila caviae hypothetical protein cca00615 SWALL:Q822R4 (EMBL:AE016996) (506 aa) fasta scores: E(): 2.1e-191, 90.9% id in 506 aa; monooxygenase 670311 3338169 CAB587 Chlamydophila abortus S26/3 monooxygenase YP_219988.1 668791 D 218497 CDS YP_219989.1 62185204 3338170 complement(670416..674828) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00616 SWALL:Q822R3 (EMBL:AE016996) (1458 aa) fasta scores: E(): 0, 60.35% id in 1468 aa, and to Chlamydia trachomatis hypothetical protein Ct147 SWALL:O84149 (EMBL:AE001288) (1449 aa) fasta scores: E(): 5.3e-40, 24.63% id in 1498 aa, and to Chlamydia pneumoniae ct147 hypothetical protein cpj0150 SWALL:Q9JSI7 (EMBL:AP002545) (1537 aa) fasta scores: E(): 1.8e-37, 27.09% id in 1480 aa; transmembrane protein 674828 3338170 CAB588 Chlamydophila abortus S26/3 transmembrane protein YP_219989.1 670416 R 218497 CDS YP_219990.1 62185205 3337450 complement(674977..676959) 1 NC_004552.2 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 676959 ligA 3337450 ligA Chlamydophila abortus S26/3 NAD-dependent DNA ligase LigA YP_219990.1 674977 R 218497 CDS YP_219991.1 62185206 3338171 complement(676967..678823) 1 NC_004552.2 Similar to Chlamydia trachomatis serine/threonine protein kinase ct145 SWALL:O84147 (EMBL:AE001288) (614 aa) fasta scores: E(): 6e-141, 61.06% id in 619 aa, and to Chlamydophila caviae protein kinase, cca00618 SWALL:Q822R1 (EMBL:AE016996) (618 aa) fasta scores: E(): 6.4e-208, 84.62% id in 618 aa; serine/threonine protein kinase 678823 3338171 CAB590 Chlamydophila abortus S26/3 serine/threonine protein kinase YP_219991.1 676967 R 218497 CDS YP_219992.1 62185207 3338172 complement(679055..679447) 1 NC_004552.2 Similar to Chlamydophila caviae conserved domain protein cca00619 SWALL:Q822R0 (EMBL:AE016996) (121 aa) fasta scores: E(): 4.8e-34, 81.25% id in 112 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0148 SWALL:AAP98081 (EMBL:AE017157) (149 aa) fasta scores: E(): 3.3e-09, 39.78% id in 93 aa. Note the differing C-termini.; transmembrane protein 679447 3338172 CAB591 Chlamydophila abortus S26/3 transmembrane protein YP_219992.1 679055 R 218497 CDS YP_219993.1 62185208 3338173 679860..680231 1 NC_004552.2 Very limited similarity to Fusobacterium nucleatum transcriptional regulator, MarR family fn1232 SWALL:Q8RE85 (EMBL:AE010629) (113 aa) fasta scores: E(): 4.6, 23.15% id in 95 aa; hypothetical protein 680231 3338173 CAB592 Chlamydophila abortus S26/3 hypothetical protein YP_219993.1 679860 D 218497 CDS YP_219994.1 62185209 3338174 complement(680641..680967) 1 NC_004552.2 Similar to Chlamydophila caviae conserved domain protein cca00621 SWALL:Q822Q8 (EMBL:AE016996) (108 aa) fasta scores: E(): 2.2e-24, 66.03% id in 106 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0147 SWALL:AAP98080 (EMBL:AE017157) (161 aa) fasta scores: E(): 1.4e-05, 35.78% id in 95 aa, and to Chlamydia pneumoniae hypothetical protein cpn0146 or cpj0146 or cp0627 SWALL:Q9Z937 (EMBL:AE001601) (161 aa) fasta scores: E(): 1.4e-05, 35.78% id in 95 aa; transmembrane protein 680967 3338174 CAB593 Chlamydophila abortus S26/3 transmembrane protein YP_219994.1 680641 R 218497 CDS YP_219995.1 62185210 3338175 complement(681081..681485) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00622 SWALL:Q822Q7 (EMBL:AE016996) (143 aa) fasta scores: E(): 6e-15, 45.11% id in 133 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 681485 3338175 CAB594 Chlamydophila abortus S26/3 hypothetical protein YP_219995.1 681081 R 218497 CDS YP_219996.1 62185211 3338176 complement(681564..683066) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00623 SWALL:Q822Q6 (EMBL:AE016996) (502 aa) fasta scores: E(): 7.8e-165, 80.43% id in 501 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0146 SWALL:AAP98079 (EMBL:AE017157) (522 aa) fasta scores: E(): 1.2e-111, 58.05% id in 472 aa, and to Chlamydia pneumoniae hypothetical protein Cp0628 SWALL:Q9K227 (EMBL:AE002220) (522 aa) fasta scores: E(): 1.2e-111, 58.05% id in 472 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 683066 3338176 CAB595 Chlamydophila abortus S26/3 hypothetical protein YP_219996.1 681564 R 218497 CDS YP_219997.1 62185212 3337673 686033..688552 1 NC_004552.2 Similar to Chlamydia pneumoniae probable outer membrane protein Pmp10 precursor or omp5 or cp0303 SWALL:PM10_CHLPN (SWALL:Q9RB65) (928 aa) fasta scores: E(): 2.8e-116, 42.07% id in 953 aa, and to Chlamydia psittaci Pomp90B precursor SWALL:P77792 (EMBL:U65943) (839 aa) fasta scores: E(): 0, 100% id in 839 aa. Note this CDS contains a homopolymeric run of 15 x G residues which may be important for phase variable expression of its protein product; hypothetical protein 688552 pmp17G 3337673 pmp17G Chlamydophila abortus S26/3 hypothetical protein YP_219997.1 686033 D 218497 CDS YP_219998.1 62185213 3337631 complement(688680..691274) 1 NC_004552.2 Similar to Brucella suis protein ClpB ATPase stress-respsonse protein or br1864 SWALL:Q9AEM5 (EMBL:AJ251205) (874 aa) fasta scores: E(): 3.3e-133, 50% id in 864 aa, and to Chlamydophila caviae ATP-dependent Clp protease, subunit B ClpB or cca00625 SWALL:Q822Q4 (EMBL:AE016996) (864 aa) fasta scores: E(): 0, 95.83% id in 864 aa, and to Caulobacter crescentus ATP-dependent Clp protease, ATP-binding subunit ClpB cc0878 SWALL:Q9A9T4 (EMBL:AE005764) (859 aa) fasta scores: E(): 5.5e-135, 51.1% id in 863 aa; ClpB ATPase stress response protein 691274 clpB 3337631 clpB Chlamydophila abortus S26/3 ClpB ATPase stress response protein YP_219998.1 688680 R 218497 CDS YP_219999.1 62185214 3338177 complement(691334..692137) 1 NC_004552.2 Similar to Chlamydophila caviae ABC transporter, periplasmic substrate-binding protein, cca00626 SWALL:Q822Q3 (EMBL:AE016996) (266 aa) fasta scores: E(): 4.4e-76, 75.28% id in 267 aa; ABC transporter component 692137 3338177 CAB600 Chlamydophila abortus S26/3 ABC transporter component YP_219999.1 691334 R 218497 CDS YP_220000.1 62185215 3338178 complement(692137..692913) 1 NC_004552.2 Similar to Chlamydophila caviae ABC transporter, ATP-binding protein cca00627 SWALL:Q822Q2 (EMBL:AE016996) (248 aa) fasta scores: E(): 1.3e-80, 89.02% id in 246 aa, and to Leptospira interrogans ABC transporter ATP-binding protein La2056 SWALL:Q8F4I5 (EMBL:AE011378) (255 aa) fasta scores: E(): 1.5e-26, 38.16% id in 262 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll0328 SWALL:Q8DLZ8 (EMBL:AP005370) (268 aa) fasta scores: E(): 9.5e-26, 40.22% id in 266 aa; ABC transporter ATP-binding protein 692913 3338178 CAB601 Chlamydophila abortus S26/3 ABC transporter ATP-binding protein YP_220000.1 692137 R 218497 CDS YP_220001.1 62185216 3338179 complement(692922..693707) 1 NC_004552.2 Similar to Pseudomonas putida toluene tolerance protein Ttg2B SWALL:Q9Z401 (EMBL:AF106002) (265 aa) fasta scores: E(): 2.7e-20, 34.72% id in 216 aa, and to Chlamydophila caviae ABC transporter, permease, cca00628 SWALL:Q822Q1 (EMBL:AE016996) (263 aa) fasta scores: E(): 1.3e-90, 93.84% id in 260 aa, and to Pirellula sp probable permease of ABC transporter rb7135 SWALL:CAD75200 (EMBL:BX294145) (296 aa) fasta scores: E(): 1.1e-24, 41.66% id in 204 aa; permease component of ABC transporter 693707 3338179 CAB602 Chlamydophila abortus S26/3 permease component of ABC transporter YP_220001.1 692922 R 218497 CDS YP_220002.1 62185217 3337995 complement(693745..695058) 1 NC_004552.2 catalyzes the formation of 5-aminolevulinate from (S)-4-amino-5-oxopentanoate; glutamate-1-semialdehyde aminotransferase 695058 hemL 3337995 hemL Chlamydophila abortus S26/3 glutamate-1-semialdehyde aminotransferase YP_220002.1 693745 R 218497 CDS YP_220003.1 62185218 3338180 complement(695151..695720) 1 NC_004552.2 Similar to Pseudomonas aeruginosa transcriptional regulator AlgH or pa0405 SWALL:Q9RQ16 (EMBL:AF137022) (189 aa) fasta scores: E(): 1.4e-10, 31.57% id in 171 aa, and to Chlamydophila caviae transcriptional regulator, cca00630 SWALL:Q822P9 (EMBL:AE016996) (189 aa) fasta scores: E(): 2.3e-74, 93.65% id in 189 aa, and to Chlorobium tepidum hypothetical protein Ct0663 SWALL:Q8KEM4 (EMBL:AE012839) (187 aa) fasta scores: E(): 6.9e-23, 37.91% id in 182 aa; hypothetical protein 695720 3338180 CAB604 Chlamydophila abortus S26/3 hypothetical protein YP_220003.1 695151 R 218497 CDS YP_220004.1 62185219 3338181 complement(695742..696182) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00631 SWALL:Q822P8 (EMBL:AE016996) (146 aa) fasta scores: E(): 1.8e-53, 89.72% id in 146 aa, and to Chlamydophila pneumoniae TW-183 hypothetical protein cpb0141 SWALL:AAP98074 (EMBL:AE017157) (146 aa) fasta scores: E(): 2e-47, 80.13% id in 146 aa, and to Chlamydia pneumoniae hypothetical protein YqdE or cpn0140 or cp0632 SWALL:Q9Z943 (EMBL:AE001600) (146 aa) fasta scores: E(): 2e-47, 80.13% id in 146 aa; hypothetical protein 696182 3338181 CAB605 Chlamydophila abortus S26/3 hypothetical protein YP_220004.1 695742 R 218497 CDS YP_220005.1 62185220 3338182 complement(696179..696880) 1 NC_004552.2 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 696880 3338182 CAB606 Chlamydophila abortus S26/3 ribose-5-phosphate isomerase A YP_220005.1 696179 R 218497 CDS YP_220006.1 62185221 3338183 complement(696966..697085) 1 NC_004552.2 Doubtful CDS with no significant database hits; hypothetical protein 697085 3338183 CAB607 Chlamydophila abortus S26/3 hypothetical protein YP_220006.1 696966 R 218497 CDS YP_220007.1 62185222 3338185 complement(698886..700136) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 1.3e-65, 42.5% id in 400 aa, and to Chlamydophila caviae hypothetical protein cca00636 SWALL:Q822P3 (EMBL:AE016996) (411 aa) fasta scores: E(): 5.6e-62, 42.56% id in 397 aa, and to Chlamydophila caviae hypothetical protein cca00639 SWALL:Q822P0 (EMBL:AE016996) (556 aa) fasta scores: E(): 1.6e-36, 32.82% id in 326 aa; transmembrane protein 700136 3338185 CAB610 Chlamydophila abortus S26/3 transmembrane protein YP_220007.1 698886 R 218497 CDS YP_220008.1 62185223 3338186 complement(700457..701875) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00639 SWALL:Q822P0 (EMBL:AE016996) (556 aa) fasta scores: E(): 1.1e-80, 47.01% id in 436 aa, and to Chlamydophila caviae hypothetical protein cca00634 SWALL:Q822P5 (EMBL:AE016996) (416 aa) fasta scores: E(): 1.1e-38, 34.84% id in 330 aa, and to Chlamydophila caviae hypothetical protein cca00636 SWALL:Q822P3 (EMBL:AE016996) (411 aa) fasta scores: E(): 5.6e-37, 38.09% id in 294 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 701875 3338186 CAB611 Chlamydophila abortus S26/3 hypothetical protein YP_220008.1 700457 R 218497 CDS YP_220009.1 62185224 3338187 702479..703234 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00640 SWALL:Q822N9 (EMBL:AE016996) (251 aa) fasta scores: E(): 3.3e-83, 79.28% id in 251 aa, and to Chlamydophila pneumoniae TW-183 YbgI or cpb0138 SWALL:AAP98071 (EMBL:AE017157) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa, and to Chlamydia pneumoniae hypothetical protein cpn0137/cp0635/cpj0137 SWALL:Y137_CHLPN (SWALL:Q9Z946) (251 aa) fasta scores: E(): 9.1e-70, 68.12% id in 251 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 703234 3338187 CAB612 Chlamydophila abortus S26/3 hypothetical protein YP_220009.1 702479 D 218497 CDS YP_220010.1 62185225 3338188 703327..705153 1 NC_004552.2 Similar to Bacillus licheniformis Pz-peptidase SWALL:P70922 (EMBL:D88209) (628 aa) fasta scores: E(): 1.5e-82, 36.92% id in 612 aa, and to Chlamydophila caviae oligoendopeptidase F PepF or cca00641 SWALL:Q822N8 (EMBL:AE016996) (609 aa) fasta scores: E(): 0, 86.7% id in 609 aa; peptidase 705153 3338188 CAB613 Chlamydophila abortus S26/3 peptidase YP_220010.1 703327 D 218497 CDS YP_220011.1 62185226 3337976 705281..705589 1 NC_004552.2 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 705589 groES 3337976 groES Chlamydophila abortus S26/3 co-chaperonin GroES YP_220011.1 705281 D 218497 CDS YP_220012.1 62185227 3337974 705639..707273 1 NC_004552.2 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 707273 groEL 3337974 groEL Chlamydophila abortus S26/3 molecular chaperone GroEL YP_220012.1 705639 D 218497 CDS YP_220013.1 62185228 3338189 707378..708217 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00644 SWALL:Q822N7 (EMBL:AE016996) (267 aa) fasta scores: E(): 1.1e-94, 86.89% id in 267 aa, and to Chlamydia pneumoniae ChlPS hypothetical protein CPN0133 or CPJ0133 or CP0639 SWALL:Q9Z948 (EMBL:AE001599) (257 aa) fasta scores: E(): 5.2e-63, 60.67% id in 267 aa; hypothetical protein 708217 3338189 CAB616 Chlamydophila abortus S26/3 hypothetical protein YP_220013.1 707378 D 218497 CDS YP_220014.1 62185229 3338190 708480..709103 1 NC_004552.2 hypothetical protein 709103 3338190 CAB617 Chlamydophila abortus S26/3 hypothetical protein YP_220014.1 708480 D 218497 CDS YP_220015.1 62185230 3338191 709149..710054 1 NC_004552.2 Similar in parts to Chlamydophila caviae conserved domain protein cca00647 SWALL:Q822N4 (EMBL:AE016996) (269 aa) fasta scores: E(): 2.8e-16, 41.12% id in 214 aa; hypothetical protein 710054 3338191 CAB618 Chlamydophila abortus S26/3 hypothetical protein YP_220015.1 709149 D 218497 CDS YP_220016.1 62185231 3338192 complement(710056..710871) 1 NC_004552.2 Similar to Chlamydophila pneumoniae TW-183 biotin--[acetyl-CoA-carboxylase] ligase CPB0130 SWALL:AAP98063 (EMBL:AE017157) (259 aa) fasta scores: E(): 4.1e-56, 54.47% id in 257 aa, and to Rickettsia conorii similarity to N-terminal of biotin-protein ligase RC0781 SWALL:Q92HJ0 (EMBL:AE008634) (250 aa) fasta scores: E(): 7.9e-17, 34.12% id in 252 aa; hypothetical protein 710871 3338192 CAB619 Chlamydophila abortus S26/3 hypothetical protein YP_220016.1 710056 R 218497 CDS YP_220017.1 62185232 3338193 710968..711987 1 NC_004552.2 Similar to Shigella flexneri transmembrane subunit YtfF or SF4276 SWALL:Q83IK9 (EMBL:AE015435) (324 aa) fasta scores: E(): 1.3e-21, 27.45% id in 306 aa, and to Escherichia coli hypothetical protein YtfF or B4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.4e-21, 27.12% id in 306 aa; hypothetical protein 711987 3338193 CAB620 Chlamydophila abortus S26/3 hypothetical protein YP_220017.1 710968 D 218497 CDS YP_220018.1 62185233 3338194 712482..714680 1 NC_004552.2 Similar to Chlorobium tepidum exodeoxyribonuclease V, alpha subunit, CT1402 SWALL:Q8KCL3 (EMBL:AE012898) (734 aa) fasta scores: E(): 1.4e-94, 38.62% id in 725 aa, and to Clostridium tetani exodeoxyribonuclease V alpha chain CTC00322 SWALL:Q898W6 (EMBL:AE015937) (743 aa) fasta scores: E(): 1.7e-76, 38.15% id in 747 aa; exodeoxyribonuclease 714680 3338194 CAB621 Chlamydophila abortus S26/3 exodeoxyribonuclease YP_220018.1 712482 D 218497 CDS YP_220019.1 62185234 3337459 complement(714696..716351) 1 NC_004552.2 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 716351 metG 3337459 metG Chlamydophila abortus S26/3 methionyl-tRNA synthetase YP_220019.1 714696 R 218497 CDS YP_220020.1 62185235 3338195 complement(716351..716647) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00652 SWALL:Q822M9 (EMBL:AE016996) (98 aa) fasta scores: E(): 2e-28, 81.63% id in 98 aa, and to Chlamydia pneumoniae protein CPN0121 or CP0652 or CPJ0121 SWALL:Y121_CHLPN (SWALL:Q9Z960) (97 aa) fasta scores: E(): 5.3e-22, 69.38% id in 98 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 716647 3338195 CAB623 Chlamydophila abortus S26/3 hypothetical protein YP_220020.1 716351 R 218497 CDS YP_220021.1 62185236 3337275 complement(716644..717258) 1 NC_004552.2 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 717258 gmk 3337275 gmk Chlamydophila abortus S26/3 guanylate kinase YP_220021.1 716644 R 218497 CDS YP_220022.1 62185237 3338092 complement(717265..717903) 1 NC_004552.2 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 717903 rnhB 3338092 rnhB Chlamydophila abortus S26/3 ribonuclease HII YP_220022.1 717265 R 218497 CDS YP_220023.1 62185238 3337491 complement(717957..718325) 1 NC_004552.2 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 718325 rplS 3337491 rplS Chlamydophila abortus S26/3 50S ribosomal protein L19 YP_220023.1 717957 R 218497 CDS YP_220024.1 62185239 3338221 complement(718350..719417) 1 NC_004552.2 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; Chlamydial proteins show a C-terminal extension of unknown function; tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein 719417 trmD 3338221 trmD Chlamydophila abortus S26/3 tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein YP_220024.1 718350 R 218497 CDS YP_220025.1 62185240 3338117 complement(719433..719792) 1 NC_004552.2 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 719792 rpsP 3338117 rpsP Chlamydophila abortus S26/3 30S ribosomal protein S16 YP_220025.1 719433 R 218497 CDS YP_220026.1 62185241 3338044 complement(719783..721126) 1 NC_004552.2 Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 signal recognition particle protein Ffh or B2610 or C3131 or Z3904 or ECS3473 SWALL:SR54_ECOLI (SWALL:P07019) (453 aa) fasta scores: E(): 3.8e-58, 40.8% id in 446 aa, and to Bacillus halodurans signal recognition particle Ffh or BH2484 SWALL:Q9KA10 (EMBL:AP001515) (451 aa) fasta scores: E(): 4.6e-62, 43.21% id in 442 aa; signal recognition particle protein 721126 ffh 3338044 ffh Chlamydophila abortus S26/3 signal recognition particle protein YP_220026.1 719783 R 218497 CDS YP_220027.1 62185242 3337276 complement(721153..722004) 1 NC_004552.2 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 722004 3337276 CAB629 Chlamydophila abortus S26/3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_220027.1 721153 R 218497 CDS YP_220028.1 62185243 3338067 complement(721982..723067) 1 NC_004552.2 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 723067 prfA 3338067 prfA Chlamydophila abortus S26/3 peptide chain release factor 1 YP_220028.1 721982 R 218497 CDS YP_220029.1 62185244 3338095 complement(723455..723781) 1 NC_004552.2 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 723781 rpmE2 3338095 rpmE2 Chlamydophila abortus S26/3 50S ribosomal protein L31 YP_220029.1 723455 R 218497 CDS YP_220030.1 62185245 3337277 723866..724621 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00662 SWALL:Q822M0 (EMBL:AE016996) (249 aa) fasta scores: E(): 2.2e-74, 74.08% id in 247 aa, and to Chlamydia pneumoniae CT021 hypothetical protein CPN0111 or CPJ0111 or CP0662 SWALL:Q9Z970 (EMBL:AE001597) (251 aa) fasta scores: E(): 2.8e-44, 45.52% id in 246 aa; hypothetical protein 724621 3337277 CAB632 Chlamydophila abortus S26/3 hypothetical protein YP_220030.1 723866 D 218497 CDS YP_220031.1 62185246 3337278 724920..726812 1 NC_004552.2 Similar to Chlamydophila caviae signal peptidase I, CCA00663 SWALL:Q822L9 (EMBL:AE016996) (629 aa) fasta scores: E(): 0, 85.87% id in 630 aa, and to Chlamydophila pneumoniae TW-183 signal peptidase I CPB0111 SWALL:AAP98044 (EMBL:AE017157) (636 aa) fasta scores: E(): 9e-172, 68.71% id in 636 aa; signal peptidase I 726812 3337278 CAB633 Chlamydophila abortus S26/3 signal peptidase I YP_220031.1 724920 D 218497 CDS YP_220032.1 62185247 3337999 complement(726872..730003) 1 NC_004552.2 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 730003 ileS 3337999 ileS Chlamydophila abortus S26/3 isoleucyl-tRNA synthetase YP_220032.1 726872 R 218497 CDS YP_220033.1 62185248 3337279 730770..731279 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00665 SWALL:Q822L7 (EMBL:AE016996) (165 aa) fasta scores: E(): 1.8e-38, 60% id in 165 aa, and to Chlamydia pneumoniae similarity to CT018 CPN0108 or CPJ0108 or CP0666 SWALL:Q9Z973 (EMBL:AE001597) (185 aa) fasta scores: E(): 9.5e-19, 38.15% id in 152 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 731279 3337279 CAB635 Chlamydophila abortus S26/3 hypothetical protein YP_220033.1 730770 D 218497 CDS YP_220034.1 62185249 3337280 complement(731274..732566) 1 NC_004552.2 Similar to Synechococcus sp. PhoH SEA0005 SWALL:Q935Z1 (EMBL:U30252) (442 aa) fasta scores: E(): 7.5e-52, 45.67% id in 451 aa, and to Bacillus cereus phosphate starvation-inducible protein PhoH protein BC3951 SWALL:Q819M5 (EMBL:AE017011) (442 aa) fasta scores: E(): 1.4e-49, 43.55% id in 450 aa; phosphate starvation-inducible protein 732566 3337280 CAB636 Chlamydophila abortus S26/3 phosphate starvation-inducible protein YP_220034.1 731274 R 218497 CDS YP_220035.1 62185250 3337281 732866..733648 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00667 SWALL:Q822L5 (EMBL:AE016996) (273 aa) fasta scores: E(): 1e-92, 88.84% id in 260 aa, and to Chlamydia pneumoniae CTt016 hypothetical protein CPN0105 or CPJ0105 or CP0669 SWALL:Q9Z976 (EMBL:AE001596) (273 aa) fasta scores: E(): 7.3e-72, 71.37% id in 255 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 733648 3337281 CAB637 Chlamydophila abortus S26/3 hypothetical protein YP_220035.1 732866 D 218497 CDS YP_220036.1 62185251 3337282 733793..735019 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00668 SWALL:Q822L4 (EMBL:AE016996) (409 aa) fasta scores: E(): 4.4e-125, 86.55% id in 409 aa, and to Chlamydia pneumoniae CT017 hypothetical protein CPN0104 or CPJ0104 or CP0670 SWALL:Q9Z977 (EMBL:AE001596) (400 aa) fasta scores: E(): 5.9e-98, 67.98% id in 406 aa; hypothetical protein 735019 3337282 CAB638 Chlamydophila abortus S26/3 hypothetical protein YP_220036.1 733793 D 218497 CDS YP_220037.1 62185252 3337283 complement(735021..735902) 1 NC_004552.2 Similar to the C-terminus of both Oryza sativa P0048D08.24 protein SWALL:Q8H4C1 (EMBL:AP004269) (426 aa) fasta scores: E(): 6.1e-08, 23.48% id in 264 aa and Arabidopsis thaliana hypothetical protein SWALL:Q8LFU2 (EMBL:AY084639) (347 aa) fasta scores: E(): 1.3e-07, 24.29% id in 284 aa. Note: All significant database hits are to eukaryotic entries; hypothetical protein 735902 3337283 CAB639 Chlamydophila abortus S26/3 hypothetical protein YP_220037.1 735021 R 218497 CDS YP_220038.1 62185253 3337284 complement(736190..737251) 1 NC_004552.2 Similar to Chlorobium tepidum cytochrome D ubiquinol oxidase, subunit II CydB or CT1819 SWALL:Q8KBG8 (EMBL:AE012934) (340 aa) fasta scores: E(): 5.3e-27, 31.08% id in 341 aa, and to Xanthomonas axonopodis cyanide insensitive terminal oxidase CioB or XAC3736 SWALL:Q8PG81 (EMBL:AE012023) (340 aa) fasta scores: E(): 4.8e-26, 32.75% id in 345 aa; cytochrome D ubiquinol oxidase, subunit II 737251 3337284 CAB640 Chlamydophila abortus S26/3 cytochrome D ubiquinol oxidase, subunit II YP_220038.1 736190 R 218497 CDS YP_220039.1 62185254 3337285 complement(737254..738594) 1 NC_004552.2 Similar to Bacillus anthracis cytochrome D ubiquinol oxidase, subunit I CydA-1 or BA1943 SWALL:Q81RU4 (EMBL:AE017030) (467 aa) fasta scores: E(): 4.9e-59, 36.93% id in 444 aa, and to Bacillus subtilis cytochrome D ubiquinol oxidase subunit I CydA or BSU38760 SWALL:CYDA_BACSU (SWALL:P94364) (468 aa) fasta scores: E(): 3.6e-53, 34.34% id in 463 aa; cytochrome D ubiquinol oxidase, subunit I 738594 3337285 CAB641 Chlamydophila abortus S26/3 cytochrome D ubiquinol oxidase, subunit I YP_220039.1 737254 R 218497 CDS YP_220040.1 62185255 3337286 738793..739587 1 NC_004552.2 Similar to Streptococcus pneumoniae conserved hypothetical protein SPR1419 SWALL:Q8DP14 (EMBL:AE008512) (292 aa) fasta scores: E(): 3.3e-26, 35.65% id in 258 aa, and to Lactococcus lactis hypothetical protein YedA or LL0423 SWALL:Q9CIE0 (EMBL:AE006279) (292 aa) fasta scores: E(): 7e-26, 36.03% id in 247 aa; hypothetical protein 739587 3337286 CAB642 Chlamydophila abortus S26/3 hypothetical protein YP_220040.1 738793 D 218497 CDS YP_220041.1 62185256 3337287 739569..740852 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00672 SWALL:Q822L0 (EMBL:AE016996) (427 aa) fasta scores: E(): 3.5e-159, 93.67% id in 427 aa, and to Chlamydia pneumoniae hypothetical protein CP0674 SWALL:Q9K219 (EMBL:AE002225) (425 aa) fasta scores: E(): 9.9e-133, 76.34% id in 427 aa. Note: This CDS has a possible alternative start codon at residue 22; hypothetical protein 740852 3337287 CAB643 Chlamydophila abortus S26/3 hypothetical protein YP_220041.1 739569 D 218497 CDS YP_220042.1 62185257 3337288 741070..742437 1 NC_004552.2 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 742437 3337288 CAB644 Chlamydophila abortus S26/3 lipid A biosynthesis lauroyl acyltransferase YP_220042.1 741070 D 218497 CDS YP_220043.1 62185258 3338071 complement(742818..744263) 1 NC_004552.2 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 744263 pyk 3338071 pyk Chlamydophila abortus S26/3 pyruvate kinase YP_220043.1 742818 R 218497 CDS YP_220044.1 62185259 3337289 744554..749974 1 NC_004552.2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 749974 3337289 CAB646 Chlamydophila abortus S26/3 excinuclease ABC subunit A YP_220044.1 744554 D 218497 CDS YP_220045.1 62185260 3337290 complement(749969..752770) 1 NC_004552.2 PknD; responsible for phosphorylation of proteins on serine and threonine residues; similar to eukaryotic Ser/Thr kinases; in Chlamydia trachomatis itseems to interact with Pkn1, another serine/threonine-protein kinase; serine/threonine-protein kinase 752770 pknD 3337290 pknD Chlamydophila abortus S26/3 serine/threonine-protein kinase YP_220045.1 749969 R 218497 CDS YP_220046.1 62185261 3338242 complement(752791..755613) 1 NC_004552.2 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 755613 valS 3338242 valS Chlamydophila abortus S26/3 valyl-tRNA synthetase YP_220046.1 752791 R 218497 CDS YP_220047.1 62185262 3337291 complement(755669..756145) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00679 SWALL:Q822K3 (EMBL:AE016996) (162 aa) fasta scores: E(): 1.1e-50, 79.11% id in 158 aa, and to Chlamydia pneumoniae CT303 hypothetical protein CPN0093 or CPJ0093 SWALL:Q9Z988 (EMBL:AE001594) (169 aa) fasta scores: E(): 2.1e-39, 63.29% id in 158 aa. Note: This CDS contains a possible alternative start codon at residue 29; hypothetical protein 756145 3337291 CAB649 Chlamydophila abortus S26/3 hypothetical protein YP_220047.1 755669 R 218497 CDS YP_220048.1 62185263 3337271 complement(756105..756530) 1 NC_004552.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 756530 atpK 3337271 atpK Chlamydophila abortus S26/3 V-type ATP synthase subunit K YP_220048.1 756105 R 218497 CDS YP_220049.1 62185264 3337270 complement(756665..758614) 1 NC_004552.2 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 758614 atpI 3337270 atpI Chlamydophila abortus S26/3 V-type ATP synthase subunit I YP_220049.1 756665 R 218497 CDS YP_220050.1 62185265 3337269 complement(758605..759231) 1 NC_004552.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 759231 atpD 3337269 atpD Chlamydophila abortus S26/3 V-type ATP synthase subunit D YP_220050.1 758605 R 218497 CDS YP_220051.1 62185266 3337268 complement(759216..760532) 1 NC_004552.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 760532 atpB 3337268 atpB Chlamydophila abortus S26/3 V-type ATP synthase subunit B YP_220051.1 759216 R 218497 CDS YP_220052.1 62185267 3337267 complement(760539..762314) 1 NC_004552.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 762314 atpA 3337267 atpA Chlamydophila abortus S26/3 V-type ATP synthase subunit A YP_220052.1 760539 R 218497 CDS YP_220053.1 62185268 3337292 complement(762308..763108) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00685 SWALL:Q822J7 (EMBL:AE016996) (266 aa) fasta scores: E(): 1.1e-99, 93.6% id in 266 aa, and to Chlamydia muridarum hypothetical protein Tc0583 tc0583 SWALL:Y583_CHLMU (SWALL:Q9PK84) (266 aa) fasta scores: E(): 5.9e-74, 69.54% id in 266 aa, and to Chlamydia pneumoniae hypothetical protein cpn0087/cp0687/cpj0087 cpn0087 or cp0687 or cpj0087 SWALL:Y087_CHLPN (SWALL:Q9Z994) (266 aa) fasta scores: E(): 1.2e-73, 68.79% id in 266 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 763108 3337292 CAB655 Chlamydophila abortus S26/3 hypothetical protein YP_220053.1 762308 R 218497 CDS YP_220054.1 62185269 3337293 complement(763154..763780) 1 NC_004552.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 763780 3337293 CAB656 Chlamydophila abortus S26/3 V-type ATP synthase subunit E YP_220054.1 763154 R 218497 CDS YP_220055.1 62185270 3337294 763888..764640 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00687 SWALL:Q822J5 (EMBL:AE016996) (252 aa) fasta scores: E(): 6.4e-66, 76.19% id in 252 aa, and to Chlamydia pneumoniae ct311 hypothetical protein cpn0085 or cpj0085 or cp0690 SWALL:Q9Z996 (EMBL:AE001594) (247 aa) fasta scores: E(): 2.2e-44, 56.74% id in 252 aa, and to Chlamydia muridarum hypothetical protein Tc0585 SWALL:Q9PK82 (EMBL:AE002327) (237 aa) fasta scores: E(): 1.9e-42, 55.46% id in 247 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 764640 3337294 CAB657 Chlamydophila abortus S26/3 hypothetical protein YP_220055.1 763888 D 218497 CDS YP_220056.1 62185271 3337295 complement(764655..765035) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00688 SWALL:Q822J4 (EMBL:AE016996) (136 aa) fasta scores: E(): 1.3e-43, 89.68% id in 126 aa, and to Chlamydia pneumoniae predicted ferredoxin cpn0084 or cpj0084 or cp0691 SWALL:Q9Z997 (EMBL:AE001594) (130 aa) fasta scores: E(): 9.1e-32, 66.11% id in 121 aa, and to Chlamydia trachomatis predicted ferredoxin ct312 SWALL:O84314 (EMBL:AE001303) (123 aa) fasta scores: E(): 1.4e-26, 61.06% id in 113 aa. Note the differing N-termini. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein 765035 3337295 CAB658 Chlamydophila abortus S26/3 hypothetical protein YP_220056.1 764655 R 218497 CDS YP_220057.1 62185272 3338214 complement(765090..766073) 1 NC_004552.2 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 766073 talA 3338214 talA Chlamydophila abortus S26/3 transaldolase B YP_220057.1 765090 R 218497 CDS YP_220058.1 62185273 3338102 complement(766187..770368) 1 NC_004552.2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 770368 rpoC 3338102 rpoC Chlamydophila abortus S26/3 DNA-directed RNA polymerase subunit beta' YP_220058.1 766187 R 218497 CDS YP_220059.1 62185274 3338101 complement(770396..774154) 1 NC_004552.2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 774154 rpoB 3338101 rpoB Chlamydophila abortus S26/3 DNA-directed RNA polymerase subunit beta YP_220059.1 770396 R 218497 CDS YP_220060.2 161501893 3337484 complement(774294..774689) 1 NC_004552.2 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 774689 rplL 3337484 rplL Chlamydophila abortus S26/3 50S ribosomal protein L7/L12 YP_220060.2 774294 R 218497 CDS YP_220061.1 62185276 3337482 complement(774731..775243) 1 NC_004552.2 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 775243 rplJ 3337482 rplJ Chlamydophila abortus S26/3 50S ribosomal protein L10 YP_220061.1 774731 R 218497 CDS YP_220062.1 62185277 3337475 complement(775257..775955) 1 NC_004552.2 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 775955 rplA 3337475 rplA Chlamydophila abortus S26/3 50S ribosomal protein L1 YP_220062.1 775257 R 218497 CDS YP_220063.1 62185278 3337483 complement(775978..776403) 1 NC_004552.2 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 776403 rplK 3337483 rplK Chlamydophila abortus S26/3 50S ribosomal protein L11 YP_220063.1 775978 R 218497 CDS YP_220064.1 62185279 3337473 complement(776512..777060) 1 NC_004552.2 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 777060 nusG 3337473 nusG Chlamydophila abortus S26/3 transcription antitermination protein NusG YP_220064.1 776512 R 218497 CDS YP_220065.1 62185280 3337296 complement(777065..777310) 1 NC_004552.2 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 777310 secE 3337296 secE Chlamydophila abortus S26/3 preprotein translocase subunit SecE YP_220065.1 777065 R 218497 CDS YP_220066.1 62185281 3338236 complement(777471..778655) 1 NC_004552.2 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 778655 tuf 3338236 tuf Chlamydophila abortus S26/3 elongation factor Tu YP_220066.1 777471 R 218497 CDS YP_220067.1 62185282 3337297 complement(778848..779069) 1 NC_004552.2 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 779069 infA 3337297 infA Chlamydophila abortus S26/3 translation initiation factor IF-1 YP_220067.1 778848 R 218497 CDS YP_220068.1 62185283 3337298 779368..780354 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00700 SWALL:Q822I2 (EMBL:AE016996) (328 aa) fasta scores: E(): 2.1e-99, 81.15% id in 329 aa, and to Chlamydia pneumoniae ct324 hypothetical protein cpn0072 or cpj0072 SWALL:Q9Z9A9 (EMBL:AE001592) (335 aa) fasta scores: E(): 5.3e-54, 50.48% id in 311 aa; transmembrane protein 780354 3337298 CAB670 Chlamydophila abortus S26/3 transmembrane protein YP_220068.1 779368 D 218497 CDS YP_220069.1 62185284 3337299 780357..780806 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00701 SWALL:Q822I1 (EMBL:AE016996) (149 aa) fasta scores: E(): 6.8e-53, 87.91% id in 149 aa, and to Chlamydia pneumoniae ct325 hypothetical protein cpn0071 SWALL:Q9Z9B0 (EMBL:AE001592) (149 aa) fasta scores: E(): 6.1e-42, 73.23% id in 142 aa, and to Bacteroides thetaiotaomicron conserved hypothetical protein bt2547 SWALL:Q8A4Q0 (EMBL:AE016936) (141 aa) fasta scores: E(): 1.3e-07, 33.92% id in 112 aa; hypothetical protein 780806 3337299 CAB671 Chlamydophila abortus S26/3 hypothetical protein YP_220069.1 780357 D 218497 CDS YP_220070.1 62185285 3337300 complement(781329..781922) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00706 SWALL:Q822H6 (EMBL:AE016996) (199 aa) fasta scores: E(): 8.6e-45, 63.26% id in 196 aa. Also similar to several BioY-family proteins including: Chlamydia muridarum SWALL:Q9PK35 (EMBL:AE002332)(196 aa) fasta scores: E()=8.4e-30, 50%i d in 180 aa.; transmembrane protein 781922 3337300 CAB672 Chlamydophila abortus S26/3 transmembrane protein YP_220070.1 781329 R 218497 CDS YP_220071.1 62185286 3337301 782200..783669 1 NC_004552.2 Weakly similar to Chlamydophila caviae hypothetical protein Cca00707 SWALL:Q822H5 (EMBL:AE016996) (621 aa) fasta scores: E(): 1.1e-30, 33.87% id in 431 aa; hypothetical protein 783669 3337301 CAB673 Chlamydophila abortus S26/3 hypothetical protein YP_220071.1 782200 D 218497 CDS YP_220072.1 62185287 3337593 complement(783917..784267) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00708 SWALL:Q822H4 (EMBL:AE016996) (116 aa) fasta scores: E(): 1e-26, 66.66% id in 108 aa; transmembrane protein 784267 3337593 CAB673A Chlamydophila abortus S26/3 transmembrane protein YP_220072.1 783917 R 218497 CDS YP_220073.1 62185288 3337594 complement(784339..786021) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00709 SWALL:Q822H3 (EMBL:AE016996) (556 aa) fasta scores: E(): 3.7e-145, 63.92% id in 560 aa, and to Chlamydia pneumoniae hypothetical protein cpn0066 or cpj0066 or cp0708 SWALL:Q9Z9B5 (EMBL:AE001592) (577 aa) fasta scores: E(): 3.4e-67, 36.54% id in 561 aa; transmembrane protein 786021 3337594 CAB674 Chlamydophila abortus S26/3 transmembrane protein YP_220073.1 784339 R 218497 CDS YP_220074.1 62185289 3337595 complement(786387..786860) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00710 SWALL:Q822H2 (EMBL:AE016996) (176 aa) fasta scores: E(): 2.6e-40, 71.97% id in 157 aa. Note the differing N-termini. Only significant database matches are to Chlamydiaceae proteins.; hypothetical protein 786860 3337595 CAB676 Chlamydophila abortus S26/3 hypothetical protein YP_220074.1 786387 R 218497 CDS YP_220075.1 62185290 3337639 complement(787635..788501) 1 NC_004552.2 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 788501 dapA 3337639 dapA Chlamydophila abortus S26/3 dihydrodipicolinate synthase YP_220075.1 787635 R 218497 CDS YP_220076.1 62185291 3337457 complement(788514..789836) 1 NC_004552.2 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 789836 lysC 3337457 lysC Chlamydophila abortus S26/3 aspartate kinase YP_220076.1 788514 R 218497 CDS YP_220077.1 62185292 3337264 complement(789824..790825) 1 NC_004552.2 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 790825 asd 3337264 asd Chlamydophila abortus S26/3 aspartate-semialdehyde dehydrogenase YP_220077.1 789824 R 218497 CDS YP_220078.1 62185293 3337640 complement(791006..791746) 1 NC_004552.2 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 791746 dapB 3337640 dapB Chlamydophila abortus S26/3 dihydrodipicolinate reductase YP_220078.1 791006 R 218497 CDS YP_220079.1 62185294 3337596 791950..792783 1 NC_004552.2 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 792783 phhA 3337596 phhA Chlamydophila abortus S26/3 phenylalanine 4-monooxygenase YP_220079.1 791950 D 218497 CDS YP_220080.1 62185295 3337597 792770..793408 1 NC_004552.2 Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 transporter fnv1336 SWALL:EAA24320 (EMBL:AABF01000039) (235 aa) fasta scores: E(): 3.2e-08, 27.77% id in 198 aa, and to Chlamydophila caviae conserved hypothetical integral membrane protein tigr00697 cca00717 SWALL:Q822G5 (EMBL:AE016996) (223 aa) fasta scores: E(): 8.7e-59, 73.03% id in 204 aa, and to Thermotoga maritima hypothetical protein Tm0792 SWALL:Q9WZP9 (EMBL:AE001747) (212 aa) fasta scores: E(): 1.1e-13, 29.59% id in 196 aa; transmembrane transport protein 793408 3337597 CAB682 Chlamydophila abortus S26/3 transmembrane transport protein YP_220080.1 792770 D 218497 CDS YP_220081.1 62185296 3337598 793498..794631 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00718 SWALL:Q822G4 (EMBL:AE016996) (359 aa) fasta scores: E(): 6.2e-82, 57.71% id in 350 aa, and to Chlamydia muridarum hypothetical protein Tc0258 SWALL:Q9PL50 (EMBL:AE002292) (335 aa) fasta scores: E(): 9.4e-16, 31.37% id in 290 aa, and to Chlamydia trachomatis membrane thiol protease ct868 SWALL:O84876 (EMBL:AE001360) (418 aa) fasta scores: E(): 1.5e-10, 28.09% id in 210 aa; hypothetical protein 794631 3337598 CAB683 Chlamydophila abortus S26/3 hypothetical protein YP_220081.1 793498 D 218497 CDS YP_220082.1 62185297 3337599 794643..795434 1 NC_004552.2 Similar to Klebsiella aerogenes protein MoaE SWALL:MOAE_KLEAE (SWALL:P54795) (257 aa) fasta scores: E(): 2.2e-10, 23.67% id in 245 aa, and to Chlamydophila caviae short chain dehydrogenase, cca00719 SWALL:Q822G3 (EMBL:AE016996) (282 aa) fasta scores: E(): 1.9e-79, 79.46% id in 263 aa, and to Thermoplasma acidophilum 3-oxoacyl-[acyl-carrier-protein] reductase related protein ta0822 SWALL:Q9HJY9 (EMBL:AL445065) (269 aa) fasta scores: E(): 1.2e-12, 28.96% id in 252 aa; monoamine dehydrogenase/reductase 795434 3337599 CAB684 Chlamydophila abortus S26/3 monoamine dehydrogenase/reductase YP_220082.1 794643 D 218497 CDS YP_220083.1 62185298 3337273 795683..796678 1 NC_004552.2 Similar to Erwinia herbicola biotin synthase BioB SWALL:BIOB_ERWHE (SWALL:Q47862) (346 aa) fasta scores: E(): 6.4e-58, 48.55% id in 311 aa, and to Chlamydia pneumoniae biotin synthase BioB or cpn1044 or cp0808 SWALL:Q9Z6L5 (EMBL:AE001684) (331 aa) fasta scores: E(): 1.5e-103, 73.62% id in 326 aa, and to Anabaena sp. biotin synthase alr1921 SWALL:Q8YVQ3 (EMBL:AP003587) (335 aa) fasta scores: E(): 7.4e-71, 55.59% id in 322 aa; biotin synthase 796678 bioB 3337273 bioB Chlamydophila abortus S26/3 biotin synthase YP_220083.1 795683 D 218497 CDS YP_220084.1 62185299 3337629 796657..797805 1 NC_004552.2 Similar to Bacillus sphaericus 8-amino-7-oxononanoate synthase BioF SWALL:BIOF_BACSH (SWALL:P22806) (389 aa) fasta scores: E(): 8.8e-38, 35.89% id in 351 aa, and to Chlamydia pneumoniae oxononanoate synthase BioF_2 or cpn1043 or cp0809 SWALL:Q9Z6L6 (EMBL:AE001684) (382 aa) fasta scores: E(): 9.2e-88, 60.36% id in 381 aa, and to Pasteurella multocida BioF or pm1901 SWALL:Q9CJU0 (EMBL:AE006227) (387 aa) fasta scores: E(): 1.8e-36, 36.05% id in 380 aa; 8-amino-7-oxononanoate synthase 797805 bioF 3337629 bioF Chlamydophila abortus S26/3 8-amino-7-oxononanoate synthase YP_220084.1 796657 D 218497 CDS YP_220085.1 62185300 3337274 797790..798413 1 NC_004552.2 Similar to Bacillus subtilis dethiobiotin synthetase BioD or bsu30210 SWALL:BIOD_BACSU (SWALL:P53558) (231 aa) fasta scores: E(): 7e-05, 29.46% id in 207 aa, and to Chlamydia pneumoniae dethiobiotin synthetase BioD or cpn1042 or cp0810 SWALL:BIOD_CHLPN (SWALL:Q9Z6L7) (219 aa) fasta scores: E(): 3.5e-51, 62.94% id in 197 aa, and to Rhizobium loti dethiobiotin synthetase mll9098 SWALL:Q982F7 (EMBL:AP003015) (211 aa) fasta scores: E(): 2.7e-22, 35.67% id in 199 aa; dethiobiotin synthetase 798413 bioD 3337274 bioD Chlamydophila abortus S26/3 dethiobiotin synthetase YP_220085.1 797790 D 218497 CDS YP_220086.1 62185301 3337272 798407..799684 1 NC_004552.2 Similar to Escherichia coli adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or b0774 SWALL:BIOA_ECOLI (SWALL:P12995) (429 aa) fasta scores: E(): 8.6e-51, 37.19% id in 414 aa, and to Chlamydia pneumoniae adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA or cpn1041 or Cp0811 SWALL:Q9Z6L8 (EMBL:AE001684) (423 aa) fasta scores: E(): 1.1e-118, 66.82% id in 422 aa, and to Bradyrhizobium japonicum id904 id904 or BioA or blr2099 SWALL:Q9AMS3 (EMBL:AF322013) (421 aa) fasta scores: E(): 3.1e-65, 43.3% id in 411 aa; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 799684 bioA 3337272 bioA Chlamydophila abortus S26/3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_220086.1 798407 D 218497 CDS YP_220087.1 62185302 3337600 799666..800325 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn1040 or cpj1040 or cp0812 SWALL:Q9Z6L9 (EMBL:AE001684) (223 aa) fasta scores: E(): 1.7e-52, 64.78% id in 213 aa, and to Leptospira interrogans conserved hypothetical protein La2331 SWALL:Q8F3R9 (EMBL:AE011402) (215 aa) fasta scores: E(): 3.3e-16, 37.65% id in 162 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 800325 3337600 CAB689 Chlamydophila abortus S26/3 hypothetical protein YP_220087.1 799666 D 218497 CDS YP_220088.1 62185303 3337259 800409..801746 1 NC_004552.2 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 801746 aroA 3337259 aroA Chlamydophila abortus S26/3 3-phosphoshikimate 1-carboxyvinyltransferase YP_220088.1 800409 D 218497 CDS YP_220089.1 62185304 3337263 801682..802203 1 NC_004552.2 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 802203 aroM 3337263 aroM Chlamydophila abortus S26/3 shikimate kinase YP_220089.1 801682 D 218497 CDS YP_220090.1 62185305 3337261 802200..803279 1 NC_004552.2 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 803279 aroC 3337261 aroC Chlamydophila abortus S26/3 chorismate synthase YP_220090.1 802200 D 218497 CDS YP_220091.1 62185306 3337260 803276..804415 1 NC_004552.2 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 804415 aroB 3337260 aroB Chlamydophila abortus S26/3 3-dehydroquinate synthase YP_220091.1 803276 D 218497 CDS YP_220092.1 62185307 3337262 804396..805829 1 NC_004552.2 AroDE; bifunctional enzyme; can convert 3-dehydroquinate to 3-dehydroshkimate and then to shikimate; involved in the synthesis of aromatic amino acids and other metabolites; type I 3-DHQase; bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase 805829 aroDE 3337262 aroDE Chlamydophila abortus S26/3 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase YP_220092.1 804396 D 218497 CDS YP_220093.1 62185308 3337601 805880..806674 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00728 SWALL:Q822F5 (EMBL:AE016996) (263 aa) fasta scores: E(): 9.2e-84, 79.16% id in 264 aa, and to Chlamydia pneumoniae outer membrane protein cpn1034/cp0818/cpj1034 precursor SWALL:OMPY_CHLPN (SWALL:Q9Z6M5) (262 aa) fasta scores: E(): 1.4e-56, 55.72% id in 262 aa, and to SWALL:AAP99003 (EMBL:UNKNOWN ACCESSION) (262 aa) fasta scores: E(): 1.4e-56, 55.72% id in 262 aa; hypothetical protein 806674 3337601 CAB695 Chlamydophila abortus S26/3 hypothetical protein YP_220093.1 805880 D 218497 CDS YP_220094.1 62185309 3337602 806781..808127 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00729 SWALL:Q822F4 (EMBL:AE016996) (451 aa) fasta scores: E(): 3.7e-152, 82.04% id in 451 aa, and to Chlamydia pneumoniae ct372 hypothetical protein cpn1033 or cpj1033 or cp0819 SWALL:Q9Z6M6 (EMBL:AE001683) (438 aa) fasta scores: E(): 2.2e-102, 58.57% id in 449 aa, and to Chlamydia trachomatis hypothetical protein Ct372 SWALL:O84377 (EMBL:AE001310) (442 aa) fasta scores: E(): 3.9e-73, 49.88% id in 437 aa; hypothetical protein 808127 3337602 CAB696 Chlamydophila abortus S26/3 hypothetical protein YP_220094.1 806781 D 218497 CDS YP_220095.1 62185310 3337603 808162..808749 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00730 SWALL:Q822F3 (EMBL:AE016996) (195 aa) fasta scores: E(): 5.6e-79, 96.92% id in 195 aa, and to Chlamydia muridarum hypothetical protein Tc0652 SWALL:Q9PK21 (EMBL:AE002332) (195 aa) fasta scores: E(): 7.4e-75, 91.28% id in 195 aa, and to Chlamydia pneumoniae ct373 hypothetical protein cpn1032 or cpj1032 or cp0820 SWALL:Q9Z6M7 (EMBL:AE001683) (195 aa) fasta scores: E(): 2.7e-73, 89.17% id in 194 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 808749 3337603 CAB697 Chlamydophila abortus S26/3 hypothetical protein YP_220095.1 808162 D 218497 CDS YP_220096.1 62185311 3337256 808759..810219 1 NC_004552.2 Similar to Pseudomonas aeruginosa arginine/ornithine antiporter ArcD or pa5170 SWALL:ARCD_PSEAE (SWALL:P18275) (482 aa) fasta scores: E(): 2.3e-72, 43.3% id in 478 aa, and to Chlamydophila caviae amino acid permease ArcD or cca00731 SWALL:Q822F2 (EMBL:AE016996) (486 aa) fasta scores: E(): 2.9e-164, 87.86% id in 486 aa, and to Chlamydia pneumoniae amino acid permease cp0821 SWALL:Q9K1X7 (EMBL:AE002240) (485 aa) fasta scores: E(): 1.7e-154, 80.61% id in 485 aa; amino acid permease 810219 arcD 3337256 arcD Chlamydophila abortus S26/3 amino acid permease YP_220096.1 808759 D 218497 CDS YP_220097.1 62185312 3337604 810331..811371 1 NC_004552.2 Similar to Chlamydophila caviae oxidoreductase, DadA family cca00732 SWALL:Q822F1 (EMBL:AE016996) (346 aa) fasta scores: E(): 9.8e-123, 89.56% id in 345 aa, and to Chlamydia pneumoniae predicted D-amino acid dehydrogenase cpn1030 or cpj1030 or cp0822 SWALL:Q9Z6M9 (EMBL:AE001683) (348 aa) fasta scores: E(): 1.7e-107, 75.86% id in 348 aa, and to Chlamydia muridarum oxidoreductase, DadA family tc0654 SWALL:Q9PK19 (EMBL:AE002334) (351 aa) fasta scores: E(): 3.6e-105, 74.85% id in 346 aa, and to Chlamydia trachomatis predicted D-amino acid dehydrogenase ct375 SWALL:O84380 (EMBL:AE001311) (352 aa) fasta scores: E(): 2.8e-103, 73.48% id in 347 aa; oxidoreductase 811371 3337604 CAB699 Chlamydophila abortus S26/3 oxidoreductase YP_220097.1 810331 D 218497 CDS YP_220098.1 62185313 3337605 complement(811361..812185) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00733 SWALL:Q822F0 (EMBL:AE016996) (274 aa) fasta scores: E(): 2.8e-93, 86.49% id in 274 aa, and to Chlamydia pneumoniae hypothetical protein Cp0823 SWALL:Q9K1X6 (EMBL:AE002240) (273 aa) fasta scores: E(): 8.6e-73, 68.13% id in 273 aa, and to Chlamydia pneumoniae hypothetical protein cpn1029 or cpj1029 SWALL:Q9Z6N0 (EMBL:AE001683) (279 aa) fasta scores: E(): 8.8e-73, 68.13% id in 273 aa; transmembrane protein 812185 3337605 CAB700 Chlamydophila abortus S26/3 transmembrane protein YP_220098.1 811361 R 218497 CDS YP_220099.1 62185314 3337606 complement(812207..813199) 1 NC_004552.2 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 813199 3337606 CAB701 Chlamydophila abortus S26/3 malate dehydrogenase YP_220099.1 812207 R 218497 CDS YP_220100.1 62185315 3337607 complement(813545..813688) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00735 SWALL:Q822E8 (EMBL:AE016996) (47 aa) fasta scores: E(): 3e-16, 87.23% id in 47 aa, and to Chlamydia pneumoniae late transcription unit A protein LtuA or cpn1026 or cp0826 or cpj1026 SWALL:LTUA_CHLPN (SWALL:Q9Z6N3) (47 aa) fasta scores: E(): 7.7e-12, 63.83% id in 47 aa, and to Chlamydia trachomatis late transcription unit A protein LtuA or ct377 SWALL:LTUA_CHLTR (SWALL:Q46403) (46 aa) fasta scores: E(): 9.1e-11, 60% id in 45 aa; late transcription unit A 813688 3337607 CAB702 Chlamydophila abortus S26/3 late transcription unit A YP_220100.1 813545 R 218497 CDS YP_220101.1 62185316 3337661 complement(813787..815382) 1 NC_004552.2 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 815382 pgi 3337661 pgi Chlamydophila abortus S26/3 glucose-6-phosphate isomerase YP_220101.1 813787 R 218497 CDS YP_220102.1 62185317 3337608 815452..816351 1 NC_004552.2 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 816351 xerD 3337608 xerD Chlamydophila abortus S26/3 site-specific tyrosine recombinase XerD YP_220102.1 815452 D 218497 CDS YP_220103.1 62185318 3337609 complement(816348..816647) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00738 SWALL:Q822E5 (EMBL:AE016996) (95 aa) fasta scores: E(): 7.2e-22, 66.31% id in 95 aa, and to Chlamydia pneumoniae hypothetical protein cpn1023 cpn1023 or cpj1023 or cp0829 SWALL:Q9Z6N6 (EMBL:AE001683) (99 aa) fasta scores: E(): 5.5e-14, 48% id in 100 aa. Note the differing translational start sites and the alternative translational start site at codon 5.; lipoprotein 816647 3337609 CAB705 Chlamydophila abortus S26/3 lipoprotein YP_220103.1 816348 R 218497 CDS YP_220104.1 62185319 3337610 816999..818444 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00739 SWALL:Q822E4 (EMBL:AE016996) (480 aa) fasta scores: E(): 1.3e-92, 67.28% id in 483 aa, and to Chlamydia trachomatis hypothetical protein Ct863 SWALL:O84871 (EMBL:AE001359) (482 aa) fasta scores: E(): 2.5e-51, 46.29% id in 499 aa, and to Chlamydia muridarum hypothetical protein Tc0253 SWALL:Q9PL55 (EMBL:AE002292) (490 aa) fasta scores: E(): 9.7e-48, 44.28% id in 499 aa. Note the high incidence of Serine residues in the predicted product of this CDS.Only significant full-length database matches are to Chlamydiaceae proteins.; serine-rich protein 818444 3337610 CAB706 Chlamydophila abortus S26/3 serine-rich protein YP_220104.1 816999 D 218497 CDS YP_220105.1 62185320 3337611 818444..818962 1 NC_004552.2 Similar to Yersinia pestis low calcium response locus protein H LcrH or ypcd1.30c or y5048 or y0051 SWALL:LCRH_YERPE (SWALL:P21207) (168 aa) fasta scores: E(): 3e-05, 28.22% id in 124 aa, and to Chlamydophila caviae type III secretion chaperone cca00740 SWALL:Q822E3 (EMBL:AE016996) (172 aa) fasta scores: E(): 5.2e-61, 88.37% id in 172 aa, and to Chlamydia pneumoniae low calcium response protein H LcrH_2 or cpn1021 or cp0832 SWALL:Q9Z6N8 (EMBL:AE001682) (172 aa) fasta scores: E(): 5.8e-51, 75.43% id in 171 aa; low calcium response locus protein 818962 3337611 CAB707 Chlamydophila abortus S26/3 low calcium response locus protein YP_220105.1 818444 D 218497 CDS YP_220106.1 62185321 3337727 818981..820501 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00741 SWALL:Q822E2 (EMBL:AE016996) (504 aa) fasta scores: E(): 3.7e-125, 66.73% id in 505 aa, and to Chlamydia pneumoniae ct861 hypothetical protein cpn1020 or cp0833 SWALL:Q9Z6N9 (EMBL:AE001682) (510 aa) fasta scores: E(): 4.2e-70, 40.77% id in 515 aa, and to Chlamydia pneumoniae ct861 hypothetical protein cpj1020 SWALL:Q9JS77 (EMBL:AP002548) (510 aa) fasta scores: E(): 1.3e-69, 40.58% id in 515 aa. Note the high incidence of Serine and Leucine residues in the predicted product of this CDS.; hypothetical protein 820501 3337727 CAB708 Chlamydophila abortus S26/3 hypothetical protein YP_220106.1 818981 D 218497 CDS YP_220107.1 62185322 3337728 820521..821999 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00742 SWALL:Q822E1 (EMBL:AE016996) (494 aa) fasta scores: E(): 2e-125, 76.76% id in 495 aa, and to Chlamydia pneumoniae ct860 hypothetical protein cpn1019 or cpj1019 or cp0834 SWALL:Q9Z6P0 (EMBL:AE001682) (497 aa) fasta scores: E(): 1.9e-66, 46.72% id in 488 aa, and to Chlamydia muridarum hypothetical protein Tc0250 SWALL:Q9PL58 (EMBL:AE002292) (497 aa) fasta scores: E(): 3.6e-56, 41.36% id in 498 aa. Note the high incidence of Serine residues in the predicted product of this CDS and the predicted DNA-binding motif between amino acid residues 358-379. Only significant full-length database matches are to Chlamydiaceae proteins.; serine-rich protein 821999 3337728 CAB709 Chlamydophila abortus S26/3 serine-rich protein YP_220107.1 820521 D 218497 CDS YP_220108.1 62185323 3337729 complement(822007..822729) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein Cca00743 SWALL:Q822E0 (EMBL:AE016996) (240 aa) fasta scores: E(): 1.3e-76, 83.18% id in 220 aa, and to Chlamydia pneumoniae hypothetical protein Cp0835 SWALL:Q9K1X3 (EMBL:AE002242) (219 aa) fasta scores: E(): 3.8e-56, 62.5% id in 216 aa, and to Chlamydia pneumoniae hypothetical protein cpn1018 or cpj1018 SWALL:Q9Z6P1 (EMBL:AE001682) (244 aa) fasta scores: E(): 4.1e-56, 62.5% id in 216 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 822729 3337729 CAB710 Chlamydophila abortus S26/3 hypothetical protein YP_220108.1 822007 R 218497 CDS YP_220109.1 62185324 3337435 complement(822692..823621) 1 NC_004552.2 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 823621 ispH 3337435 ispH Chlamydophila abortus S26/3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_220109.1 822692 R 218497 CDS YP_220110.1 62185325 3337730 complement(823731..825542) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00745 SWALL:Q822D8 (EMBL:AE016996) (593 aa) fasta scores: E(): 4.5e-195, 77.9% id in 593 aa, and to Chlamydia pneumoniae protein cpn1016/cp0837/cpj1016 SWALL:YA16_CHLPN (SWALL:Q9Z6P3) (619 aa) fasta scores: E(): 3.7e-135, 55.44% id in 606 aa, and to Chlamydia muridarum hypothetical protein Tc0248 SWALL:Y248_CHLMU (SWALL:Q9PL60) (601 aa) fasta scores: E(): 3.3e-126, 51.82% id in 604 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 825542 3337730 CAB712 Chlamydophila abortus S26/3 hypothetical protein YP_220110.1 823731 R 218497 CDS YP_220111.1 62185326 3337731 complement(825655..826917) 1 NC_004552.2 Similar to Vibrio cholerae Na+/H+ antiporter NhaD or vca1015 SWALL:Q9EYG4 (EMBL:AF331042) (477 aa) fasta scores: E(): 1.7e-07, 26.74% id in 445 aa, and to Chlamydophila caviae Na+/H+ antiporter, cca00746 SWALL:Q822D7 (EMBL:AE016996) (420 aa) fasta scores: E(): 2.8e-167, 96.42% id in 420 aa, and to Chlamydia pneumoniae ct857 hypothetical protein cpn1015 or cpj1015 SWALL:Q9Z6P4 (EMBL:AE001682) (420 aa) fasta scores: E(): 3.3e-150, 85.68% id in 419 aa; Na+/H+ antiporter 826917 3337731 CAB713 Chlamydophila abortus S26/3 Na+/H+ antiporter YP_220111.1 825655 R 218497 CDS YP_220112.1 62185327 3337732 827194..828894 1 NC_004552.2 Similar to Synechocystis sp. low affinity sulfate transporter sll0834 SWALL:Q55415 (EMBL:D64003) (564 aa) fasta scores: E(): 6.4e-37, 28.31% id in 565 aa, and to Chlamydophila caviae sulfate transporter family protein cca00747 SWALL:Q822D6 (EMBL:AE016996) (566 aa) fasta scores: E(): 1.3e-206, 95.4% id in 566 aa, and to Chlamydia trachomatis sulfate transporter YchM or ct856 SWALL:O84864 (EMBL:AE001358) (567 aa) fasta scores: E(): 2.1e-188, 85.86% id in 566 aa; sulfate transporter 828894 3337732 CAB714 Chlamydophila abortus S26/3 sulfate transporter YP_220112.1 827194 D 218497 CDS YP_220113.1 62185328 3338050 complement(828891..830273) 1 NC_004552.2 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 830273 fumC 3338050 fumC Chlamydophila abortus S26/3 fumarate hydratase YP_220113.1 828891 R 218497 CDS YP_220114.1 62185329 3337733 830325..832157 1 NC_004552.2 Similar to Fusobacterium nucleatum subsp. vincentii ATCC 49256 hydroxymethylpyrimidine transport system permease fnv1192 SWALL:EAA24212 (EMBL:AABF01000046) (257 aa) fasta scores: E(): 1.2e-15, 25.55% id in 227 aa, and to Chlamydophila caviae ABC transporter, permease, cca00749 SWALL:Q822D4 (EMBL:AE016996) (610 aa) fasta scores: E(): 1.3e-199, 84.59% id in 610 aa, and to Chlamydia pneumoniae ABC transporter permease YzeB or cpn1012 or cp0841 SWALL:Q9Z6P7 (EMBL:AE001681) (591 aa) fasta scores: E(): 7.2e-146, 64.1% id in 585 aa. CDS overlaps approximately 90 nt with the adjacent CDS; ABC transporter permease component 832157 3337733 CAB716 Chlamydophila abortus S26/3 ABC transporter permease component YP_220114.1 830325 D 218497 CDS YP_220115.1 62185330 3337430 complement(832066..832716) 1 NC_004552.2 Similar to Bradyrhizobium japonicum Bll5379 protein SWALL:Q89JA5 (EMBL:AP005954) (297 aa) fasta scores: E(): 2.7e-07, 33.33% id in 198 aa, and to Micrococcus luteus adenylate kinase Adk SWALL:KAD_MICLU (SWALL:P33107) (205 aa) fasta scores: E(): 5e-07, 30.28% id in 208 aa, and to Brachydanio rerio similar to riken cDNA 0610011d08 gene SWALL:Q7ZWE9 (EMBL:BC049446) (219 aa) fasta scores: E(): 2.3e-05, 27.72% id in 202 aa. CDS overlaps approximately 90 nt with adjacent CDS; hypothetical protein 832716 3337430 CAB717 Chlamydophila abortus S26/3 hypothetical protein YP_220115.1 832066 R 218497 CDS YP_220116.1 62185331 3337344 832807..833415 1 NC_004552.2 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhgN or b3434 or z4798 or ecs4279 or sf3457 or s4306 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 1.1e-07, 25.62% id in 199 aa, and to Chlamydophila caviae hypothetical protein cca00750 SWALL:Q822D3 (EMBL:AE016996) (202 aa) fasta scores: E(): 2.6e-66, 87.62% id in 202 aa, and to Chlamydia muridarum hypothetical protein Tc0242 SWALL:Q9PL66 (EMBL:AE002291) (199 aa) fasta scores: E(): 1.8e-33, 48.51% id in 202 aa; transmembrane protein 833415 3337344 CAB718 Chlamydophila abortus S26/3 transmembrane protein YP_220116.1 832807 D 218497 CDS YP_220117.1 62185332 3337444 833428..834036 1 NC_004552.2 Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhgN or b3434 or z4798 or ecs4279 or sf3457 or s4306 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 2.6e-18, 32.65% id in 196 aa, and to Chlamydophila caviae hypothetical protein cca00751 SWALL:Q822D2 (EMBL:AE016996) (202 aa) fasta scores: E(): 6.1e-70, 91.58% id in 202 aa, and to Chlamydia pneumoniae hypothetical protein cpn1010/cp0843/cpj1010 SWALL:YA10_CHLPN (SWALL:Q9Z6P9) (202 aa) fasta scores: E(): 1.1e-57, 76.61% id in 201 aa; transmembrane protein 834036 3337444 CAB719 Chlamydophila abortus S26/3 transmembrane protein YP_220117.1 833428 D 218497 CDS YP_220118.1 62185333 3337445 834046..834918 1 NC_004552.2 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 834918 3337445 CAB720 Chlamydophila abortus S26/3 methionine aminopeptidase YP_220118.1 834046 D 218497 CDS YP_220119.1 62185334 3337446 complement(834875..836149) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00753 SWALL:Q822D0 (EMBL:AE016996) (425 aa) fasta scores: E(): 9e-110, 77.88% id in 425 aa, and to Chlamydia pneumoniae CT850 hypothetical protein CPN1008 or CPJ1008 SWALL:Q9Z6Q1 (EMBL:AE001681) (432 aa) fasta scores: E(): 1.7e-47, 42.43% id in 436 aa; hypothetical protein 836149 3337446 CAB721 Chlamydophila abortus S26/3 hypothetical protein YP_220119.1 834875 R 218497 CDS YP_220120.1 62185335 3337447 complement(836162..836347) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00754 SWALL:Q822C9 (EMBL:AE016996) (61 aa) fasta scores: E(): 2.5e-22, 93.44% id in 61 aa, and to Chlamydia pneumoniae hypothetical protein CP0846 SWALL:Q9K1W9 (EMBL:AE002244) (61 aa) fasta scores: E(): 1.4e-16, 75.41% id in 61 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 836347 3337447 CAB722 Chlamydophila abortus S26/3 hypothetical protein YP_220120.1 836162 R 218497 CDS YP_220121.1 62185336 3337431 836615..837118 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00755 SWALL:Q822C8 (EMBL:AE016996) (167 aa) fasta scores: E(): 1.5e-50, 93.41% id in 167 aa, and to Chlamydia pneumoniae CT849 hypothetical protein CPN1006 or CPJ1006 or CP0847 SWALL:Q9Z6Q3 (EMBL:AE001681) (161 aa) fasta scores: E(): 6.3e-41, 91.42% id in 140 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 837118 3337431 CAB723 Chlamydophila abortus S26/3 hypothetical protein YP_220121.1 836615 D 218497 CDS YP_220122.1 62185337 3337432 837170..837688 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00756 SWALL:Q822C7 (EMBL:AE016996) (172 aa) fasta scores: E(): 3.7e-55, 95.34% id in 172 aa, and to Chlamydia pneumoniae CTt848 hypothetical protein CPN1005 or CPJ1005 or CP0848 SWALL:Q9Z6Q4 (EMBL:AE001681) (173 aa) fasta scores: E(): 3.6e-47, 82.18% id in 174 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 837688 3337432 CAB724 Chlamydophila abortus S26/3 hypothetical protein YP_220122.1 837170 D 218497 CDS YP_220123.1 62185338 3337433 837708..838238 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00757 SWALL:Q822C6 (EMBL:AE016996) (176 aa) fasta scores: E(): 7.1e-50, 88.06% id in 176 aa, and to Chlamydia pneumoniae CT847 hypothetical protein CPN1004 or CPJ1004 or CP0849 SWALL:Q9Z6Q5 (EMBL:AE001681) (173 aa) fasta scores: E(): 5.7e-38, 68.18% id in 176 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 838238 3337433 CAB725 Chlamydophila abortus S26/3 hypothetical protein YP_220123.1 837708 D 218497 CDS YP_220124.1 62185339 3337426 838319..839026 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00758 SWALL:Q822C5 (EMBL:AE016996) (235 aa) fasta scores: E(): 1e-86, 87.23% id in 235 aa, and to Chlamydia pneumoniae CT846 hypothetical protein CPN1003 or CPJ1003 or CP0850 SWALL:Q9Z6Q6 (EMBL:AE001681) (235 aa) fasta scores: E(): 2.9e-55, 55.74% id in 235 aa; hypothetical protein 839026 3337426 CAB726 Chlamydophila abortus S26/3 hypothetical protein YP_220124.1 838319 D 218497 CDS YP_220125.1 62185340 3337740 complement(839023..839253) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00759 SWALL:Q822C4 (EMBL:AE016996) (76 aa) fasta scores: E(): 9.6e-25, 89.33% id in 75 aa, and to Chlamydia pneumoniae CT845 hypothetical protein CPN1002 or CPJ1002 or CP0851 SWALL:Q9Z6Q7 (EMBL:AE001681) (76 aa) fasta scores: E(): 1.3e-17, 70.66% id in 75 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 839253 3337740 CAB727 Chlamydophila abortus S26/3 hypothetical protein YP_220125.1 839023 R 218497 CDS YP_220126.1 62185341 3337848 complement(839243..839716) 1 NC_004552.2 Similar to Streptococcus pneumoniae cytidine/deoxycytidylate deaminase SP0020 SWALL:Q97TC0 (EMBL:AE007319) (155 aa) fasta scores: E(): 4.7e-26, 46.66% id in 150 aa, and to Thermoanaerobacter tengcongensis cytosine/adenosine deaminases TTE0037 SWALL:Q8RDI8 (EMBL:AE012978) (148 aa) fasta scores: E(): 2.3e-25, 50.69% id in 144 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfhC or B2559 or SF2606 or S2778 SWALL:YFHC_ECOLI (SWALL:P30134) (178 aa) fasta scores: E(): 5.2e-22, 43.04% id in 151 aa; cytidine/deoxycytidylate deaminase 839716 3337848 CAB728 Chlamydophila abortus S26/3 cytidine/deoxycytidylate deaminase YP_220126.1 839243 R 218497 CDS YP_220127.1 62185342 3338116 839957..840226 1 NC_004552.2 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 840226 rpsO 3338116 rpsO Chlamydophila abortus S26/3 30S ribosomal protein S15 YP_220127.1 839957 D 218497 CDS YP_220128.1 62185343 3338065 840274..842358 1 NC_004552.2 Similar to Bacillus subtilis polyribonucleotide nucleotidyltransferase PnpA or ComR SWALL:PNP_BACSU (SWALL:P50849) (704 aa) fasta scores: E(): 6.3e-110, 46.99% id in 683 aa, and to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp or B3164 SWALL:PNP_ECOLI (SWALL:P05055) (711 aa) fasta scores: E(): 2.7e-104, 45.11% id in 676 aa; polynucleotide phosphorylase 842358 pnpA 3338065 pnpA Chlamydophila abortus S26/3 polynucleotide phosphorylase YP_220128.1 840274 D 218497 CDS YP_220129.1 62185344 3337849 complement(842460..845201) 1 NC_004552.2 Similar in its C-terminal region to Neisseria meningitidis cell division protein FtsH NMB0798 SWALL:Q9K027 (EMBL:AE002433) (655 aa) fasta scores: E(): 5.8e-100, 51.55% id in 613 aa, and to Escherichia coli, and Shigella flexneri cell division protein FtsH or HflB or MrsC or TolZ or B3178 or SF3218 or S3436 SWALL:FTSH_ECOLI (SWALL:P28691) (644 aa) fasta scores: E(): 4.2e-97, 52.38% id in 565 aa; cell division protein 845201 3337849 CAB731 Chlamydophila abortus S26/3 cell division protein YP_220129.1 842460 R 218497 CDS YP_220130.1 62185345 3337850 complement(845375..846328) 1 NC_004552.2 Similar to Streptococcus agalactiae MesJ/Ycf62 family protein SAG0014 SWALL:Q8E2H4 (EMBL:AE014191) (424 aa) fasta scores: E(): 1.8e-16, 32.75% id in 232 aa, and to Lactobacillus plantarum cell cycle protein MesJ or LP_0545 SWALL:Q88Z33 (EMBL:AL935253) (448 aa) fasta scores: E(): 1.1e-15, 27.79% id in 295 aa; hypothetical protein 846328 3337850 CAB732 Chlamydophila abortus S26/3 hypothetical protein YP_220130.1 845375 R 218497 CDS YP_220131.1 62185346 3337851 846442..847515 1 NC_004552.2 Similar to Chlamydophila caviae YjgP/YjgQ family protein CCA00765 SWALL:Q822B8 (EMBL:AE016996) (357 aa) fasta scores: E(): 8.2e-128, 92.15% id in 357 aa, and to Chlamydia pneumoniae CT839 hypothetical protein CPN0996 or CPJ0996 or CP0859 SWALL:Q9Z6R3 (EMBL:AE001680) (357 aa) fasta scores: E(): 1.7e-111, 79.27% id in 357 aa; hypothetical protein 847515 3337851 CAB733 Chlamydophila abortus S26/3 hypothetical protein YP_220131.1 846442 D 218497 CDS YP_220132.1 62185347 3337852 847519..848622 1 NC_004552.2 Similar to Chlamydophila caviae YjgP/YjgQ family protein CCA00766 SWALL:Q822B7 (EMBL:AE016996) (367 aa) fasta scores: E(): 1.3e-131, 93.18% id in 367 aa, and to Chlamydia pneumoniae CT838 hypothetical protein CPN0995 or CPJ0995 or CP0860 SWALL:Q9Z6R4 (EMBL:AE001680) (366 aa) fasta scores: E(): 5.4e-110, 76.83% id in 367 aa; hypothetical protein 848622 3337852 CAB734 Chlamydophila abortus S26/3 hypothetical protein YP_220132.1 847519 D 218497 CDS YP_220133.1 62185348 3337853 complement(848609..850639) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00767 SWALL:Q822B6 (EMBL:AE016996) (675 aa) fasta scores: E(): 4.8e-215, 84.32% id in 676 aa, and to Chlamydia pneumoniae CT837 hypothetical protein CPN0994 or CPJ0994 or CP0861 SWALL:Q9Z6R5 (EMBL:AE001680) (681 aa) fasta scores: E(): 5e-148, 59.11% id in 680 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 850639 3337853 CAB735 Chlamydophila abortus S26/3 hypothetical protein YP_220133.1 848609 R 218497 CDS YP_220134.1 62185349 3337664 complement(850946..851971) 1 NC_004552.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 851971 pheS 3337664 pheS Chlamydophila abortus S26/3 phenylalanyl-tRNA synthetase subunit alpha YP_220134.1 850946 R 218497 CDS YP_220135.1 62185350 3337492 complement(851984..852346) 1 NC_004552.2 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 852346 rplT 3337492 rplT Chlamydophila abortus S26/3 50S ribosomal protein L20 YP_220135.1 851984 R 218497 CDS YP_220136.1 62185351 3338098 complement(852368..852562) 1 NC_004552.2 Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 3.7e-05, 41.07% id in 56 aa, and to Clostridium acetobutylicum 50s ribosomal protein l35 RpmI or CAC2360 SWALL:RL35_CLOAB (SWALL:Q97GK6) (65 aa) fasta scores: E(): 5.5e-07, 46.77% id in 62 aa; 50S ribosomal protein L35 852562 rpmI 3338098 rpmI Chlamydophila abortus S26/3 50S ribosomal protein L35 YP_220136.1 852368 R 218497 CDS YP_220137.1 62185352 3337977 complement(852540..853082) 1 NC_004552.2 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 853082 infC 3337977 infC Chlamydophila abortus S26/3 translation initiation factor IF-3 YP_220137.1 852540 R 218497 CDS YP_220138.1 62185353 3337854 853495..853989 1 NC_004552.2 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 853989 nusB 3337854 nusB Chlamydophila abortus S26/3 transcription antitermination protein NusB YP_220138.1 853495 D 218497 CDS YP_220139.1 62185354 3337855 854027..854917 1 NC_004552.2 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 854917 murB 3337855 murB Chlamydophila abortus S26/3 UDP-N-acetylenolpyruvoylglucosamine reductase YP_220139.1 854027 D 218497 CDS YP_220140.1 62185355 3337857 complement(855598..856272) 1 NC_004552.2 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 856272 trmB 3337857 trmB Chlamydophila abortus S26/3 tRNA (guanine-N(7)-)-methyltransferase YP_220140.1 855598 R 218497 CDS YP_220141.1 62185356 3337858 complement(856449..857498) 1 NC_004552.2 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 857498 3337858 CAB744 Chlamydophila abortus S26/3 ribonucleotide-diphosphate reductase subunit beta YP_220141.1 856449 R 218497 CDS YP_220142.1 62185357 3337859 complement(857513..860650) 1 NC_004552.2 catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 860650 3337859 CAB745 Chlamydophila abortus S26/3 ribonucleotide-diphosphate reductase subunit alpha YP_220142.1 857513 R 218497 CDS YP_220143.1 62185358 3337860 861026..861832 1 NC_004552.2 Similar to Fusobacterium nucleatum CDP-diacylglycerol--serine O-phosphatidyltransferase FN0991 SWALL:Q8REU8 (EMBL:AE010606) (261 aa) fasta scores: E(): 4.1e-13, 31.27% id in 259 aa, and to Bacteroides thetaiotaomicron CDPp-diacylglycerol--serine O-phosphatidyltransferase BT2232 SWALL:Q8A5K7 (EMBL:AE016935) (235 aa) fasta scores: E(): 5.8e-10, 28.01% id in 257 aa; phospholipid biosynthesis-related membrane protein 861832 3337860 CAB746 Chlamydophila abortus S26/3 phospholipid biosynthesis-related membrane protein YP_220143.1 861026 D 218497 CDS YP_220144.1 62185359 3337861 861829..863067 1 NC_004552.2 Similar to Zymomonas mobilis DNA recombination protein RmuC homolog SWALL:RMUC_ZYMMO (SWALL:Q9REQ3) (448 aa) fasta scores: E(): 1e-18, 30.3% id in 363 aa, and to Haemophilus influenzae DNA recombination protein homolog RmuC or HI0500 SWALL:RMUC_HAEIN (SWALL:P44733) (450 aa) fasta scores: E(): 1.3e-10, 26.92% id in 364 aa; DNA recombination protein 863067 3337861 CAB747 Chlamydophila abortus S26/3 DNA recombination protein YP_220144.1 861829 D 218497 CDS YP_220145.1 62185360 3337862 complement(863071..865995) 1 NC_004552.2 Similar to Deinococcus radiodurans metalloprotease, DR0617 SWALL:Q9RWP9 (EMBL:AE001919) (996 aa) fasta scores: E(): 9.6e-91, 32.88% id in 970 aa, and to Clostridium tetani zn-dependent peptidase, insulinase CTC00810 SWALL:Q897D0 (EMBL:AE015938) (973 aa) fasta scores: E(): 6.6e-80, 29.96% id in 988 aa; metalloprotease 865995 3337862 CAB748 Chlamydophila abortus S26/3 metalloprotease YP_220145.1 863071 R 218497 CDS YP_220146.1 62185361 3337863 866145..867509 1 NC_004552.2 Similar to Bacillus halodurans hypothetical protein BH3875 SWALL:Q9K657 (EMBL:AP001520) (458 aa) fasta scores: E(): 6e-48, 35.09% id in 453 aa, and to Oceanobacillus iheyensis hypothetical conserved protein OB1111 SWALL:Q8CUJ6 (EMBL:AP004596) (453 aa) fasta scores: E(): 5.9e-46, 33.11% id in 447 aa; peptidase 867509 3337863 CAB749 Chlamydophila abortus S26/3 peptidase YP_220146.1 866145 D 218497 CDS YP_220147.1 62185362 3337864 complement(867568..869034) 1 NC_004552.2 Similar to Escherichia coli, and Escherichia coli O157:H7 protease Do precursor DegP or HtrA or Ptd or B0161 or Z0173 or ECS0165 SWALL:DEGP_ECOLI (SWALL:P09376) (474 aa) fasta scores: E(): 3.9e-48, 37.65% id in 494 aa, and to Chlorobium tepidum serine protease CT1447 SWALL:Q8KCH4 (EMBL:AE012902) (505 aa) fasta scores: E(): 3.3e-60, 41.44% id in 444 aa; heat shock-related exported protease 869034 3337864 CAB750 Chlamydophila abortus S26/3 heat shock-related exported protease YP_220147.1 867568 R 218497 CDS YP_220148.1 62185363 3338213 complement(869370..870245) 1 NC_004552.2 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 870245 sucD 3338213 sucD Chlamydophila abortus S26/3 succinyl-CoA synthetase subunit alpha YP_220148.1 869370 R 218497 CDS YP_220149.1 62185364 3338212 complement(870260..871420) 1 NC_004552.2 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 871420 sucC 3338212 sucC Chlamydophila abortus S26/3 succinyl-CoA synthetase subunit beta YP_220149.1 870260 R 218497 CDS YP_220150.1 62185365 3337865 871491..872351 1 NC_004552.2 Similar to Thermoanaerobacter tengcongensis signal recognition particle GTPase FtsY or TTE1464 SWALL:Q8R9W8 (EMBL:AE013104) (295 aa) fasta scores: E(): 1.3e-33, 37.81% id in 275 aa, and to The C-terminal domain of Escherichia coli cell division protein FtsY or B3464, similarity limited to the NG-domain where the GTPase activity is located SWALL:FTSY_ECOLI (SWALL:P10121) (497 aa) fasta scores: E(): 6.9e-33, 38.73% id in 284 aa; cell division protein 872351 3337865 CAB753 Chlamydophila abortus S26/3 cell division protein YP_220150.1 871491 D 218497 CDS YP_220151.1 62185366 3337866 complement(872366..873082) 1 NC_004552.2 Similar to Yersinia pestis membrane protein YPO1163 or Y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 3.4e-16, 33.63% id in 223 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YbhL or B0786 or C0868 SWALL:YBHL_ECOLI (SWALL:P75768) (234 aa) fasta scores: E(): 3.7e-14, 32.43% id in 222 aa; hypothetical protein 873082 3337866 CAB754 Chlamydophila abortus S26/3 hypothetical protein YP_220151.1 872366 R 218497 CDS YP_220152.1 62185367 3337867 complement(873137..874324) 1 NC_004552.2 Similar to Vibrio vulnificus tyrosine-specific transport protein VVv12293 SWALL:Q8DAB5 (EMBL:AE016804) (401 aa) fasta scores: E(): 1.1e-32, 32.99% id in 394 aa, and to Escherichia coli, and Shigella flexneri tyrosine-specific transport protein TyrP or B1907 or SF1953 or S2046 SWALL:TYRP_ECOLI (SWALL:P18199) (403 aa) fasta scores: E(): 1.7e-30, 30.92% id in 401 aa; tyrosine-specific transport protein 874324 3337867 CAB755 Chlamydophila abortus S26/3 tyrosine-specific transport protein YP_220152.1 873137 R 218497 CDS YP_220153.1 62185368 3338059 complement(874394..876223) 1 NC_004552.2 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 876223 glmS 3338059 glmS Chlamydophila abortus S26/3 glucosamine--fructose-6-phosphate aminotransferase YP_220153.1 874394 R 218497 CDS YP_220154.1 62185369 3337868 complement(876232..877608) 1 NC_004552.2 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 877608 glmM 3337868 glmM Chlamydophila abortus S26/3 phosphoglucosamine mutase YP_220154.1 876232 R 218497 CDS YP_220155.1 62185370 3337869 878219..879505 1 NC_004552.2 Similar to Neisseria meningitidis poly(A) polymerase PcnB or NMA1053 SWALL:Q9JV08 (EMBL:AL162755) (453 aa) fasta scores: E(): 9.7e-34, 30.8% id in 409 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 poly(A) polymerase PcnB or B0143 or C0176 or Z0154 or ECS0147 SWALL:PCNB_ECOLI (SWALL:P13685) (472 aa) fasta scores: E(): 2.3e-20, 33.33% id in 423 aa; poly(A) polymerase 879505 3337869 CAB758 Chlamydophila abortus S26/3 poly(A) polymerase YP_220155.1 878219 D 218497 CDS YP_220156.1 62185371 3337870 879519..881402 1 NC_004552.2 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate; lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 881402 lpxB 3337870 lpxB Chlamydophila abortus S26/3 lipid-A-disaccharide synthase YP_220156.1 879519 D 218497 CDS YP_220157.1 62185372 3337871 complement(881695..882270) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpj1027 or cp0825 SWALL:Q9JS06 (EMBL:AE002240) (526 aa) fasta scores: E(): 1.9, 27.32% id in 172 aa. CDS contains coiled coil from residues 110-131. Possible pseudogene.; TMH family membrane protein 882270 3337871 CAB760 Chlamydophila abortus S26/3 TMH family membrane protein YP_220157.1 881695 R 218497 CDS YP_220158.1 62185373 3337872 complement(882295..883365) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00794 SWALL:Q821Z1 (EMBL:AE016997) (373 aa) fasta scores: E(): 8.8e-36, 43.05% id in 360 aa. Note the differing N-termini. CDS contains coiled coil from residues 153-178.; TMH family membrane protein 883365 3337872 CAB761 Chlamydophila abortus S26/3 TMH family membrane protein YP_220158.1 882295 R 218497 CDS YP_220159.1 62185374 3337303 complement(884700..886109) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00797 SWALL:Q821Y8 (EMBL:AE016997) (274 aa) fasta scores: E(): 7.6e-16, 37.18% id in 277 aa. Note the C-terminal extension on the product of this CDS compared to that of C. caviae. Also note the high incidence of Glu, Ala and Val residues and the coiled coil regions between residues 112-156, 182-234, 250-315, 325-363, 384-426 and 173-488.; TMH family membrane protein 886109 3337303 CAB764 Chlamydophila abortus S26/3 TMH family membrane protein YP_220159.1 884700 R 218497 CDS YP_220160.1 62185375 3337304 complement(886492..887265) 1 NC_004552.2 Note the high incidence of Glu, Ala, Ser and Val residues and the presence of coiled coil region between residues 103-149. No significant database matches.; TMH family membrane protein 887265 3337304 CAB766 Chlamydophila abortus S26/3 TMH family membrane protein YP_220160.1 886492 R 218497 CDS YP_220161.1 62185376 3337306 complement(890185..891246) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein cca00800 SWALL:Q821Y5 (EMBL:AE016997) (355 aa) fasta scores: E(): 4.1e-50, 56.42% id in 358 aa. CDS contains coiled coil region from residues 218-239.; TMH family membrane protein 891246 3337306 CAB771 Chlamydophila abortus S26/3 TMH family membrane protein YP_220161.1 890185 R 218497 CDS YP_220162.1 62185377 3337307 complement(891524..892951) 1 NC_004552.2 No significant database matches. Note the high incidence of Glu and Ser residues within the product of this CDS; TMH family membrane protein 892951 3337307 CAB772 Chlamydophila abortus S26/3 TMH family membrane protein YP_220162.1 891524 R 218497 CDS YP_220163.1 62185378 3337308 893505..894779 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein CPJ0964 SWALL:Q9JS83 (EMBL:AP002548) (486 aa) fasta scores: E(): 0.00031, 23.11% id in 463 aa; hypothetical protein 894779 3337308 CAB773 Chlamydophila abortus S26/3 hypothetical protein YP_220163.1 893505 D 218497 CDS YP_220164.1 62185379 3337309 894981..897803 1 NC_004552.2 No significant database matches.Note the high incidence of Glu Thr and Ser residues within the product of this CDS; hypothetical protein 897803 3337309 CAB774 Chlamydophila abortus S26/3 hypothetical protein YP_220164.1 894981 D 218497 CDS YP_220165.1 62185380 3337310 898177..899478 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00805 SWALL:Q821Y0 (EMBL:AE016997) (434 aa) fasta scores: E(): 1.3e-103, 60.46% id in 435 aa, and to Chlamydia pneumoniae hypothetical protein CPN0964 or CP0896 SWALL:Q9Z6U4 (EMBL:AE001676) (486 aa) fasta scores: E(): 2.1e-09, 30.87% id in 460 aa; hypothetical protein 899478 3337310 CAB775 Chlamydophila abortus S26/3 hypothetical protein YP_220165.1 898177 D 218497 CDS YP_220166.1 62185381 3337674 complement(899562..904163) 1 NC_004552.2 Similar to Chlamydophila caviae polymorphic outer membrane protein D family protein/autotransporter CCA00806 SWALL:Q821X9 (EMBL:AE016997) (1537 aa) fasta scores: E(): 0, 73.47% id in 1542 aa, and to Chlamydia pneumoniae probable outer membrane protein precursor Pmp21 or CPN0963 or CP0897 SWALL:PM21_CHLPN (SWALL:Q9Z6U5) (1609 aa) fasta scores: E(): 6.2e-117, 42.64% id in 1646 aa, and to Chlamydia trachomatis cytolysin Ctc SWALL:Q93QE8 (EMBL:AF268092) (1530 aa) fasta scores: E(): 2.4e-107, 36.27% id in 1599 aa; hypothetical protein 904163 pmp18D 3337674 pmp18D Chlamydophila abortus S26/3 hypothetical protein YP_220166.1 899562 R 218497 CDS YP_220167.1 62185382 3337311 complement(904268..905218) 1 NC_004552.2 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 905218 3337311 CAB777 Chlamydophila abortus S26/3 glycerol-3-phosphate acyltransferase PlsX YP_220167.1 904268 R 218497 CDS YP_220168.1 62185383 3338096 complement(905234..905416) 1 NC_004552.2 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 905416 rpmF 3338096 rpmF Chlamydophila abortus S26/3 50S ribosomal protein L32 YP_220168.1 905234 R 218497 CDS YP_220169.1 62185384 3337312 complement(905429..905890) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00809 SWALL:Q821X6 (EMBL:AE016997) (153 aa) fasta scores: E(): 3.1e-53, 85.62% id in 153 aa, and to Chlamydia muridarum hypothetical protein TC0194 SWALL:Q9PLB3 (EMBL:AE002286) (146 aa) fasta scores: E(): 2.6e-23, 52.23% id in 134 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 905890 3337312 CAB779 Chlamydophila abortus S26/3 hypothetical protein YP_220169.1 905429 R 218497 CDS YP_220170.1 62185385 3337313 906201..907733 1 NC_004552.2 Similar to Xylella fastidiosa ribonuclease G CafA or PD0416 SWALL:Q87EA2 (EMBL:AE012554) (497 aa) fasta scores: E(): 6.7e-58, 39.61% id in 472 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribonuclease G CafA or Rng or B3247 or C4001 or Z4605 or ECS4119 or SF3285 or S3502 SWALL:RNG_ECOLI (SWALL:P25537) (488 aa) fasta scores: E(): 7.8e-46, 35.25% id in 485 aa; ribonuclease 907733 3337313 CAB780 Chlamydophila abortus S26/3 ribonuclease YP_220170.1 906201 D 218497 CDS YP_220171.1 62185386 3337314 907736..908737 1 NC_004552.2 Similar to Chlamydia trachomatis glycerol-3-P acyltransferase PlsB or CT807 SWALL:O84813 (EMBL:AE001353) (331 aa) fasta scores: E(): 1e-95, 67.97% id in 331 aa, and to a whole list of eukaryotic database entries, e.g. Cucumis sativus glycerol-3-phosphate acyltransferase, chloroplast precursor SWALL:PLSB_CUCSA (SWALL:Q39639) (470 aa) fasta scores: E(): 2e-42, 39.74% id in 317 aa; glycerol-3-P acyltransferase 908737 3337314 CAB781 Chlamydophila abortus S26/3 glycerol-3-P acyltransferase YP_220171.1 907736 D 218497 CDS YP_220172.1 62185387 3337315 908740..911550 1 NC_004552.2 Similar to Vibrio parahaemolyticus peptidase, insulinase VP2206 SWALL:Q87MM5 (EMBL:AP005080) (925 aa) fasta scores: E(): 3.3e-48, 24.7% id in 927 aa, and to Shewanella oneidensis peptidase, M16 family SO3083 SWALL:Q8ECQ2 (EMBL:AE015745) (929 aa) fasta scores: E(): 1.7e-41, 23.1% id in 896 aa; exported peptidase 911550 3337315 CAB782 Chlamydophila abortus S26/3 exported peptidase YP_220172.1 908740 D 218497 CDS YP_220173.1 62185388 3337316 complement(911555..912907) 1 NC_004552.2 Similar to Xylella fastidiosa hypothetical protein XF0042 SWALL:Q9PHA2 (EMBL:AE003858) (420 aa) fasta scores: E(): 1.5e-35, 29.35% id in 436 aa, and to Nitrosomonas europaea hypothetical protein NE1228 SWALL:Q82V73 (EMBL:BX321860) (418 aa) fasta scores: E(): 5.5e-32, 27.84% id in 431 aa; hypothetical protein 912907 3337316 CAB783 Chlamydophila abortus S26/3 hypothetical protein YP_220173.1 911555 R 218497 CDS YP_220174.1 62185389 3337317 complement(913307..914182) 1 NC_004552.2 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 914182 3337317 CAB784 Chlamydophila abortus S26/3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_220174.1 913307 R 218497 CDS YP_220175.1 62185390 3337481 complement(914227..914745) 1 NC_004552.2 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 914745 rplI 3337481 rplI Chlamydophila abortus S26/3 50S ribosomal protein L9 YP_220175.1 914227 R 218497 CDS YP_220176.1 62185391 3338119 complement(914766..915029) 1 NC_004552.2 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 915029 rpsR 3338119 rpsR Chlamydophila abortus S26/3 30S ribosomal protein S18 YP_220176.1 914766 R 218497 CDS YP_220177.1 62185392 3338108 complement(915047..915385) 1 NC_004552.2 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 915385 rpsF 3338108 rpsF Chlamydophila abortus S26/3 30S ribosomal protein S6 YP_220177.1 915047 R 218497 CDS YP_220178.1 62185393 3338070 complement(915463..916014) 1 NC_004552.2 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 916014 pth 3338070 pth Chlamydophila abortus S26/3 peptidyl-tRNA hydrolase YP_220178.1 915463 R 218497 CDS YP_220179.1 62185394 3337497 complement(916023..916580) 1 NC_004552.2 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 916580 rplY 3337497 rplY Chlamydophila abortus S26/3 50S ribosomal protein L25 YP_220179.1 916023 R 218497 CDS YP_220180.1 62185395 3337318 917069..918496 1 NC_004552.2 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 918496 glgA 3337318 glgA Chlamydophila abortus S26/3 glycogen synthase YP_220180.1 917069 D 218497 CDS YP_220181.1 62185396 3337319 complement(918478..919092) 1 NC_004552.2 Similar to Oceanobacillus iheyensis phosphatidylglycerophosphate synthase PgsA or OB1622 SWALL:Q8EQR9 (EMBL:AP004598) (192 aa) fasta scores: E(): 2.7e-17, 34.82% id in 201 aa, and to Bacillus subtilis CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA SWALL:PGSA_BACSU (SWALL:P46322) (193 aa) fasta scores: E(): 4.8e-12, 31.72% id in 186 aa; phosphatidylglycerophosphate synthase 919092 3337319 CAB791 Chlamydophila abortus S26/3 phosphatidylglycerophosphate synthase YP_220181.1 918478 R 218497 CDS YP_220182.1 62185397 3337736 919393..922410 1 NC_004552.2 Similar to Anabaena sp. glycyl-tRNA synthetase alpha chain GlyQ or ALL1985 SWALL:SYGA_ANASP (SWALL:Q8YVJ2) (294 aa) fasta scores: E(): 3.6e-66, 56.74% id in 289 aa, and to Tropheryma whipplei glycyl-tRNA synthetase GlyQS or TW262 SWALL:Q83I31 (EMBL:BX251410) (1024 aa) fasta scores: E(): 2.8e-77, 29.35% id in 1039 aa; glycyl-tRNA synthetase alpha chain 922410 glyQ 3337736 glyQ Chlamydophila abortus S26/3 glycyl-tRNA synthetase alpha chain YP_220182.1 919393 D 218497 CDS YP_220183.1 62185398 3337320 complement(922479..922958) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00824 SWALL:Q821W1 (EMBL:AE016997) (148 aa) fasta scores: E(): 2.6e-27, 54.36% id in 149 aa, and to Chlamydia muridarum hypothetical protein TC0177 SWALL:Q9PLC7 (EMBL:AE002285) (164 aa) fasta scores: E(): 3e-05, 30.43% id in 161 aa; hypothetical protein 922958 3337320 CAB793 Chlamydophila abortus S26/3 hypothetical protein YP_220183.1 922479 R 218497 CDS YP_220184.1 62185399 3337321 complement(923044..923559) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00825 SWALL:Q821W0 (EMBL:AE016997) (171 aa) fasta scores: E(): 7.2e-46, 73.68% id in 171 aa, and to Chlamydia muridarum hypothetical protein TC0177 SWALL:Q9PLC7 (EMBL:AE002285) (164 aa) fasta scores: E(): 3.1e-14, 38.32% id in 167 aa; hypothetical protein 923559 3337321 CAB794 Chlamydophila abortus S26/3 hypothetical protein YP_220184.1 923044 R 218497 CDS YP_220185.1 62185400 3337322 complement(923761..924273) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00826 SWALL:Q821V9 (EMBL:AE016997) (169 aa) fasta scores: E(): 2.6e-44, 65.06% id in 166 aa, and to Chlamydia pneumoniae hypothetical protein CPN0944 or CPJ0944 or CP0915 SWALL:Q9Z6W2 (EMBL:AE001674) (162 aa) fasta scores: E(): 2.8e-09, 29.69% id in 165 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 924273 3337322 CAB795 Chlamydophila abortus S26/3 hypothetical protein YP_220185.1 923761 R 218497 CDS YP_220186.1 62185401 3337323 complement(924419..924694) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00827 SWALL:Q821V8 (EMBL:AE016997) (88 aa) fasta scores: E(): 1.1e-25, 80.68% id in 88 aa, and to Chlamydia pneumoniae CT794.1 hypothetical protein CPN0943 or CPJ0943 or CP0917 SWALL:Q9Z6W3 (EMBL:AE001674) (87 aa) fasta scores: E(): 1.9e-11, 45.45% id in 88 aa; hypothetical protein 924694 3337323 CAB796 Chlamydophila abortus S26/3 hypothetical protein YP_220186.1 924419 R 218497 CDS YP_220187.1 62185402 3337324 complement(924799..926574) 1 NC_004552.2 synthesizes RNA primers at the replication forks; DNA primase 926574 dnaG 3337324 dnaG Chlamydophila abortus S26/3 DNA primase YP_220187.1 924799 R 218497 CDS YP_220188.1 62185403 3337463 926876..929356 1 NC_004552.2 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 929356 mutS 3337463 mutS Chlamydophila abortus S26/3 DNA mismatch repair protein MutS YP_220188.1 926876 D 218497 CDS YP_220189.1 62185404 3338240 929360..931174 1 NC_004552.2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 931174 uvrC 3338240 uvrC Chlamydophila abortus S26/3 excinuclease ABC subunit C YP_220189.1 929360 D 218497 CDS YP_220190.1 62185405 3337325 complement(931183..931644) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00831 SWALL:Q821V4 (EMBL:AE016997) (160 aa) fasta scores: E(): 8.2e-53, 96.73% id in 153 aa, and to Chlamydia pneumoniae CT790 hypothetical protein CPN0939 or CPJ0939 or CP0922 SWALL:Q9Z6W7 (EMBL:AE001673) (156 aa) fasta scores: E(): 1.3e-45, 88.59% id in 149 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 931644 3337325 CAB800 Chlamydophila abortus S26/3 hypothetical protein YP_220190.1 931183 R 218497 CDS YP_220191.1 62185406 3337326 931762..932268 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00832 SWALL:Q821V3 (EMBL:AE016997) (167 aa) fasta scores: E(): 8.1e-55, 85.11% id in 168 aa, and to Chlamydia muridarum hypothetical protein TC0171 SWALL:Q9PLD3 (EMBL:AE002284) (166 aa) fasta scores: E(): 1.6e-30, 53.01% id in 166 aa; hypothetical protein 932268 3337326 CAB801 Chlamydophila abortus S26/3 hypothetical protein YP_220191.1 931762 D 218497 CDS YP_220192.1 62185407 3338115 complement(932325..932630) 1 NC_004552.2 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 932630 rpsN 3338115 rpsN Chlamydophila abortus S26/3 30S ribosomal protein S14 YP_220192.1 932325 R 218497 CDS YP_220193.1 62185408 3338099 complement(932656..932793) 1 NC_004552.2 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 932793 rpmJ 3338099 rpmJ Chlamydophila abortus S26/3 50S ribosomal protein L36 YP_220193.1 932656 R 218497 CDS YP_220194.1 62185409 3337327 933208..933627 1 NC_004552.2 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 933627 rnpA 3337327 rnpA Chlamydophila abortus S26/3 ribonuclease P YP_220194.1 933208 D 218497 CDS YP_220195.1 62185410 3337328 complement(933569..934615) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00836 SWALL:Q821U9 (EMBL:AE016997) (348 aa) fasta scores: E(): 2.6e-121, 85.63% id in 348 aa, and to Chlamydia muridarum hypothetical protein TC0166 SWALL:Q9PLD8 (EMBL:AE002284) (350 aa) fasta scores: E(): 2.1e-72, 54% id in 350 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 934615 3337328 CAB805 Chlamydophila abortus S26/3 hypothetical protein YP_220195.1 933569 R 218497 CDS YP_220196.1 62185411 3337329 935046..936476 1 NC_004552.2 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 936476 cysS 3337329 cysS Chlamydophila abortus S26/3 cysteinyl-tRNA synthetase YP_220196.1 935046 D 218497 CDS YP_220197.1 62185412 3337330 complement(936473..938053) 1 NC_004552.2 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 938053 lysS 3337330 lysS Chlamydophila abortus S26/3 lysyl-tRNA synthetase YP_220197.1 936473 R 218497 CDS YP_220198.1 62185413 3337331 complement(938282..938797) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00842 SWALL:Q821U3 (EMBL:AE016997) (169 aa) fasta scores: E(): 4.5e-53, 78.1% id in 169 aa, and to Chlamydia muridarum hypothetical protein TC0161 SWALL:Q9PLE3 (EMBL:AE002283) (165 aa) fasta scores: E(): 6.2e-34, 52.69% id in 167 aa; hypothetical protein 938797 3337331 CAB808 Chlamydophila abortus S26/3 hypothetical protein YP_220198.1 938282 R 218497 CDS YP_220199.1 62185414 3337332 938961..939674 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00844 SWALL:Q821U1 (EMBL:AE016997) (240 aa) fasta scores: E(): 3.5e-65, 72.19% id in 241 aa, and to Chlamydia pneumoniae CT779 hypothetical protein CPN0925 or CPJ0925 or CP0941 SWALL:Q9Z6Y1 (EMBL:AE001672) (225 aa) fasta scores: E(): 4.9e-33, 48.68% id in 228 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 939674 3337332 CAB809 Chlamydophila abortus S26/3 hypothetical protein YP_220199.1 938961 D 218497 CDS YP_220200.1 62185415 3337333 939626..941875 1 NC_004552.2 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 941875 3337333 CAB810 Chlamydophila abortus S26/3 primosome assembly protein PriA YP_220200.1 939626 D 218497 CDS YP_220201.1 62185416 3337334 complement(941807..942913) 1 NC_004552.2 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 942913 3337334 CAB811 Chlamydophila abortus S26/3 8-amino-7-oxononanoate synthase YP_220201.1 941807 R 218497 CDS YP_220202.1 62185417 3337335 complement(942964..944610) 1 NC_004552.2 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; long chain fatty acid--ACP ligase 944610 3337335 CAB812 Chlamydophila abortus S26/3 long chain fatty acid--ACP ligase YP_220202.1 942964 R 218497 CDS YP_220203.1 62185418 3337336 complement(944603..945364) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00848 SWALL:Q821T7 (EMBL:AE016997) (253 aa) fasta scores: E(): 5.9e-92, 86.56% id in 253 aa, and to Chlamydia pneumoniae SN glycerol-3-P acyltransferase CPN0921 or CP0945 SWALL:Q9Z6Y5 (EMBL:AE001672) (253 aa) fasta scores: E(): 1.1e-69, 64.03% id in 253 aa; hypothetical protein 945364 3337336 CAB813 Chlamydophila abortus S26/3 hypothetical protein YP_220203.1 944603 R 218497 CDS YP_220204.1 62185419 3338157 945472..946452 1 NC_004552.2 Similar to Chlamydia trachomatis sulfite synthesis/biphosphate phosphatase CysQ or CT774 SWALL:O84779 (EMBL:AE001349) (342 aa) fasta scores: E(): 2.7e-62, 49.07% id in 324 aa, and to Pseudomonas syringae inositol-1-monophosphatase SuhB or PSPTO1419 SWALL:Q887A5 (EMBL:AE016860) (271 aa) fasta scores: E(): 1.8e-05, 25.24% id in 305 aa; sulfur metabolism-related protein 946452 3338157 CAB814 Chlamydophila abortus S26/3 sulfur metabolism-related protein YP_220204.1 945472 D 218497 CDS YP_220205.1 62185420 3338158 complement(946449..947498) 1 NC_004552.2 Similar to Thermoanaerobacter tengcongensis glutamate dehydrogenase/leucine dehydrogenase GdhA3 or TTE2202 SWALL:Q8R831 (EMBL:AE013166) (355 aa) fasta scores: E(): 4.9e-48, 41.69% id in 343 aa, and to Bacillus subtilis leucine dehydrogenase YqiT SWALL:DHLE_BACSU (SWALL:P54531) (364 aa) fasta scores: E(): 1.2e-43, 39.42% id in 345 aa; leucine dehydrogenase 947498 3338158 CAB815 Chlamydophila abortus S26/3 leucine dehydrogenase YP_220205.1 946449 R 218497 CDS YP_220206.1 62185421 3338159 947666..948316 1 NC_004552.2 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 948316 3338159 CAB816 Chlamydophila abortus S26/3 inorganic pyrophosphatase YP_220206.1 947666 D 218497 CDS YP_220207.1 62185422 3338160 complement(948361..948810) 1 NC_004552.2 Similar to Chlamydia muridarum mutt/nudix family protein TC0152 SWALL:Q9PLF2 (EMBL:AE002282) (150 aa) fasta scores: E(): 9.9e-51, 79.19% id in 149 aa, and to Bifidobacterium longum hypothetical protein with possible C-terminal pyrophosphate-releasing NTPase domain BL0653 SWALL:Q8G6I7 (EMBL:AE014686) (181 aa) fasta scores: E(): 3.2e-05, 34.86% id in 109 aa; hypothetical protein 948810 3338160 CAB817 Chlamydophila abortus S26/3 hypothetical protein YP_220207.1 948361 R 218497 CDS YP_220208.1 62185423 3338039 complement(948813..950063) 1 NC_004552.2 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 950063 fabF 3338039 fabF Chlamydophila abortus S26/3 3-oxoacyl-ACP synthase YP_220208.1 948813 R 218497 CDS YP_220209.1 62185424 3338161 complement(950081..950440) 1 NC_004552.2 Similar to Xylella fastidiosa hypothetical protein XF2180 SWALL:Q9PBG4 (EMBL:AE004031) (148 aa) fasta scores: E(): 3.8e-12, 38.31% id in 107 aa, and to Aquifex aeolicus hypothetical protein AQ_1272 SWALL:O67309 (EMBL:AE000732) (109 aa) fasta scores: E(): 5.4e-12, 39% id in 100 aa; hypothetical protein 950440 3338161 CAB819 Chlamydophila abortus S26/3 hypothetical protein YP_220209.1 950081 R 218497 CDS YP_220210.1 62185425 3338163 complement(951136..952800) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00856 SWALL:Q821T0 (EMBL:AE016997) (554 aa) fasta scores: E(): 1.6e-161, 91.51% id in 554 aa, and to Chlamydia pneumoniae CT768 hypothetical protein CPJ0912 or CP0954 SWALL:Q9JS48 (EMBL:AE002253) (553 aa) fasta scores: E(): 5.3e-116, 65.77% id in 558 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 952800 3338163 CAB821 Chlamydophila abortus S26/3 hypothetical protein YP_220210.1 951136 R 218497 CDS YP_220211.1 62185426 3338164 952890..953951 1 NC_004552.2 Similar to Helicobacter pylori hypothetical protein HP0656 SWALL:O25370 (EMBL:AE000579) (383 aa) fasta scores: E(): 1.2e-57, 44.57% id in 341 aa, and to Campylobacter jejuni hypothetical protein CJ0462 SWALL:Q9PI46 (EMBL:AL139075) (348 aa) fasta scores: E(): 1.6e-54, 43.6% id in 344 aa; hypothetical protein 953951 3338164 CAB822 Chlamydophila abortus S26/3 hypothetical protein YP_220211.1 952890 D 218497 CDS YP_220212.1 62185427 3338165 complement(953942..954886) 1 NC_004552.2 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 954886 miaA 3338165 miaA Chlamydophila abortus S26/3 tRNA delta(2)-isopentenylpyrophosphate transferase YP_220212.1 953942 R 218497 CDS YP_220213.1 62185428 3338166 complement(954982..955314) 1 NC_004552.2 Similar to Streptomyces coelicolor anti-sigma-B factor antagonist RsbV or BldG or SCO3549 or SCH5.12c SWALL:RSBV_STRCO (SWALL:Q9WVX8) (113 aa) fasta scores: E(): 0.00018, 26.73% id in 101 aa, and to Leptospira interrogans probable anti-sigma factor antagonist LA0839 SWALL:Q8F7V3 (EMBL:AE011269) (110 aa) fasta scores: E(): 3.9e-06, 32.67% id in 101 aa; anti sigma factor antagonist 955314 3338166 CAB825 Chlamydophila abortus S26/3 anti sigma factor antagonist YP_220213.1 954982 R 218497 CDS YP_220214.1 62185429 3337429 955390..956178 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00860 SWALL:Q821S7 (EMBL:AE016997) (262 aa) fasta scores: E(): 8.8e-82, 79% id in 262 aa, and to Chlamydia trachomatis hypothetical protein CT764 SWALL:O84769 (EMBL:AE001349) (268 aa) fasta scores: E(): 2.8e-42, 47.05% id in 255 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 956178 3337429 CAB826 Chlamydophila abortus S26/3 hypothetical protein YP_220214.1 955390 D 218497 CDS YP_220215.1 62185430 3337981 956175..956519 1 NC_004552.2 Similar to Shewanella oneidensis periplasmic divalent cation tolerance protein CutA or SO0697 SWALL:Q8EIY0 (EMBL:AE015515) (107 aa) fasta scores: E(): 7.5e-12, 36.44% id in 107 aa, and to Nitrosomonas europaea CutA1 divalent ion tolerance protein CutA or NE2388 SWALL:Q82SF1 (EMBL:BX321864) (112 aa) fasta scores: E(): 4.6e-11, 37% id in 100 aa; divalent cation tolerance protein 956519 3337981 CAB827 Chlamydophila abortus S26/3 divalent cation tolerance protein YP_220215.1 956175 D 218497 CDS YP_220216.1 62185431 3337539 956616..957044 1 NC_004552.2 Similar in its full length to Chlamydophila caviae kh domain protein CCA00862 SWALL:Q821S5 (EMBL:AE016997) (142 aa) fasta scores: E(): 2.1e-45, 86.62% id in 142 aa, and in its N-terminal region to Thermoanaerobacter tengcongensis hypothetical protein TTE1460 SWALL:YE60_THETN (SWALL:Q8R9X2) (75 aa) fasta scores: E(): 1e-05, 38.96% id in 77 aa, and to Clostridium perfringens hypothetical protein CPE1711 SWALL:YH11_CLOPE (SWALL:Q8XJP5) (75 aa) fasta scores: E(): 1.2e-05, 38.96% id in 77 aa; hypothetical protein 957044 3337539 CAB828 Chlamydophila abortus S26/3 hypothetical protein YP_220216.1 956616 D 218497 CDS YP_220217.1 62185432 3337540 complement(957110..959542) 1 NC_004552.2 catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine and catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase 959542 3337540 CAB829 Chlamydophila abortus S26/3 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase YP_220217.1 957110 R 218497 CDS YP_220218.1 62185433 3337541 complement(959551..960627) 1 NC_004552.2 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 960627 murG 3337541 murG Chlamydophila abortus S26/3 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_220218.1 959551 R 218497 CDS YP_220219.1 62185434 3337542 complement(960536..961690) 1 NC_004552.2 Similar to Bacillus subtilis stage V sporulation protein E SpoVE SWALL:SP5E_BACSU (SWALL:P07373) (366 aa) fasta scores: E(): 2e-36, 35.22% id in 352 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA MrdB or B0634 or Z0780 or ECS0672 or SF0647 or S0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 7.6e-30, 33.96% id in 318 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cell division protein FtsW or B0089 or C0107 or Z0099 or ECS0093 SWALL:FTSW_ECOLI (SWALL:P16457) (414 aa) fasta scores: E(): 4.9e-29, 31.28% id in 358 aa; exported cell division protein 961690 3337542 CAB831 Chlamydophila abortus S26/3 exported cell division protein YP_220219.1 960536 R 218497 CDS YP_220220.1 62185435 3337543 complement(961709..962437) 1 NC_004552.2 Similar to Chlamydia trachomatis muramidase NlpD or CT759 SWALL:O84764 (EMBL:AE001348) (245 aa) fasta scores: E(): 4.1e-32, 52.98% id in 251 aa, and to Chlamydia muridarum hypothetical protein TC0140 SWALL:Q9PLG4 (EMBL:AE002281) (243 aa) fasta scores: E(): 5.9e-30, 51.79% id in 251 aa; hypothetical protein 962437 3337543 CAB832 Chlamydophila abortus S26/3 hypothetical protein YP_220220.1 961709 R 218497 CDS YP_220221.1 62185436 3337544 complement(962434..963696) 1 NC_004552.2 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 963696 murD 3337544 murD Chlamydophila abortus S26/3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_220221.1 962434 R 218497 CDS YP_220222.1 62185437 3337545 complement(963700..964743) 1 NC_004552.2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 964743 mraY 3337545 mraY Chlamydophila abortus S26/3 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_220222.1 963700 R 218497 CDS YP_220223.1 62185438 3337546 complement(964761..966107) 1 NC_004552.2 Similar to Bacillus subtilis UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF SWALL:MURF_BACSU (SWALL:P96613) (457 aa) fasta scores: E(): 5.6e-28, 28.35% id in 455 aa, and to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF or Mra or B0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 5.1e-23, 26.62% id in 432 aa; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 966107 3337546 CAB835 Chlamydophila abortus S26/3 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_220223.1 964761 R 218497 CDS YP_220224.1 62185439 3337547 966499..968025 1 NC_004552.2 Similar to Thermotoga maritima 60 kDa chaperonin GroL or GroEL or MopA or TM0506 SWALL:CH60_THEMA (SWALL:Q9WYX6) (538 aa) fasta scores: E(): 1.9e-34, 27.11% id in 509 aa, and to Coxiella burnetii 60 kDa chaperonin GroL or GroEL or MopA or HtpB or CBU1718 SWALL:CH60_COXBU (SWALL:P19421) (552 aa) fasta scores: E(): 7e-34, 27.84% id in 510 aa; chaperonin 968025 3337547 CAB836 Chlamydophila abortus S26/3 chaperonin YP_220224.1 966499 D 218497 CDS YP_220225.1 62185440 3337548 968398..969279 1 NC_004552.2 Similar to Brucella melitensis phosphohydrolases, ICC family BMEI0452 SWALL:Q8YIJ2 (EMBL:AE009488) (303 aa) fasta scores: E(): 1.1e-05, 24.08% id in 274 aa, and to Rhizobium loti hypothetical protein MLLl2796 SWALL:Q98HM9 (EMBL:AP003000) (321 aa) fasta scores: E(): 1.9e-05, 24.79% id in 238 aa; hypothetical protein 969279 3337548 CAB837 Chlamydophila abortus S26/3 hypothetical protein YP_220225.1 968398 D 218497 CDS YP_220226.1 62185441 3337549 complement(969330..969587) 1 NC_004552.2 Similar to Chlamydia pneumoniae CT753 hypothetical protein CPN0896 or CPJ0896 SWALL:Q9Z710 (EMBL:AE001670) (76 aa) fasta scores: E(): 3.3e-12, 58.66% id in 75 aa, and to Chlamydia muridarum hypothetical protein TC0134 SWALL:Q9PLH0 (EMBL:AE002280) (74 aa) fasta scores: E(): 4.1e-10, 56% id in 75 aa. Only significant full-length database matches are to Chlamydiaceae proteins. Note the alternative possible translational start at codon 13; hypothetical protein 969587 3337549 CAB838 Chlamydophila abortus S26/3 hypothetical protein YP_220226.1 969330 R 218497 CDS YP_220227.1 62185442 3337658 complement(969610..970182) 1 NC_004552.2 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 970182 efp 3337658 efp Chlamydophila abortus S26/3 elongation factor P YP_220227.1 969610 R 218497 CDS YP_220228.1 62185443 3337550 970386..971261 1 NC_004552.2 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 971261 3337550 CAB840 Chlamydophila abortus S26/3 AMP nucleosidase YP_220228.1 970386 D 218497 CDS YP_220229.1 62185444 3337551 complement(971255..973252) 1 NC_004552.2 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 973252 3337551 CAB841 Chlamydophila abortus S26/3 transketolase YP_220229.1 971255 R 218497 CDS YP_220230.1 62185445 3337552 973518..976145 1 NC_004552.2 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 976145 alaS 3337552 alaS Chlamydophila abortus S26/3 alanyl-tRNA synthetase YP_220230.1 973518 D 218497 CDS YP_220231.1 62185446 3337553 976115..979372 1 NC_004552.2 Similar to Bacillus subtilis transcription-repair coupling factor Mfd SWALL:MFD_BACSU (SWALL:P37474) (1177 aa) fasta scores: E(): 1.3e-103, 35.97% id in 1109 aa, and to Escherichia coli transcription-repair coupling factor Mfd or B1114 SWALL:MFD_ECOLI (SWALL:P30958) (1148 aa) fasta scores: E(): 1.8e-100, 35.5% id in 1014 aa; transcription-repair coupling factor 979372 3337553 CAB843 Chlamydophila abortus S26/3 transcription-repair coupling factor YP_220231.1 976115 D 218497 CDS YP_220232.1 62185447 3337873 979382..980383 1 NC_004552.2 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 980383 hemE 3337873 hemE Chlamydophila abortus S26/3 uroporphyrinogen decarboxylase YP_220232.1 979382 D 218497 CDS YP_220233.1 62185448 3337874 980356..981732 1 NC_004552.2 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 981732 3337874 CAB845 Chlamydophila abortus S26/3 coproporphyrinogen III oxidase YP_220233.1 980356 D 218497 CDS YP_220234.1 62185449 3337427 981729..982997 1 NC_004552.2 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 982997 3337427 CAB846 Chlamydophila abortus S26/3 protoporphyrinogen oxidase YP_220234.1 981729 D 218497 CDS YP_220235.1 62185450 3337428 complement(982968..985472) 1 NC_004552.2 Similar to Chlamydia pneumoniae ChlTR possible phosphoprotein CPN0887 SWALL:Q9Z719 (EMBL:AE001669) (822 aa) fasta scores: E(): 3e-148, 44.88% id in 831 aa, and to Chlamydia muridarum hypothetical protein TC0120 SWALL:Q9PLI0 (EMBL:AE002279) (823 aa) fasta scores: E(): 1.8e-126, 40.43% id in 826 aa. Note the DNA-binding motif between residues 386-407. Only significant full-length database matches are to Chlamydiaceae proteins.; DNA-binding protein 985472 3337428 CAB847 Chlamydophila abortus S26/3 DNA-binding protein YP_220235.1 982968 R 218497 CDS YP_220236.1 62185451 3338076 985885..986256 1 NC_004552.2 Similar to the C-terminal region of Parechinus angulosus histone H1, gonadal SWALL:H1_PARAN (SWALL:P02256) (248 aa) fasta scores: E(): 0.0068, 35% id in 120 aa, and of Lytechinus pictus late histone H1 SWALL:H1_LYTPI (SWALL:P06144) (210 aa) fasta scores: E(): 0.02, 36.58% id in 123 aa; histone-like protein 986256 3338076 CAB848 Chlamydophila abortus S26/3 histone-like protein YP_220236.1 985885 D 218497 CDS YP_220237.1 62185452 3338004 986480..987685 1 NC_004552.2 Similar to Chlorobium tepidum RNA methyltransferase, TrmA family CT0009 SWALL:AAM71257 (EMBL:AE012780) (483 aa) fasta scores: E(): 6.6e-24, 27.51% id in 418 aa, and to Escherichia coli 23S rRNA (uracil-5-)-methyltransferase RumA or B2785 SWALL:RUMA_ECOLI (SWALL:P55135) (432 aa) fasta scores: E(): 1.6e-15, 23.91% id in 393 aa; RNA methyltransferase 987685 3338004 CAB849 Chlamydophila abortus S26/3 RNA methyltransferase YP_220237.1 986480 D 218497 CDS YP_220238.1 62185453 3338005 987756..988109 1 NC_004552.2 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 988109 yajC 3338005 yajC Chlamydophila abortus S26/3 preprotein translocase subunit YajC YP_220238.1 987756 D 218497 CDS YP_220239.1 62185454 3337471 988228..989523 1 NC_004552.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 989523 nqrF 3337471 nqrF Chlamydophila abortus S26/3 Na(+)-translocating NADH-quinone reductase subunit F YP_220239.1 988228 D 218497 CDS YP_220240.1 62185455 3338006 complement(989566..991029) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein CPN0882 or CPJ0882 SWALL:Q9Z724 (EMBL:AE001669) (379 aa) fasta scores: E(): 2e-64, 47.36% id in 361 aa; hypothetical protein 991029 3338006 CAB852 Chlamydophila abortus S26/3 hypothetical protein YP_220240.1 989566 R 218497 CDS YP_220241.1 62185456 3338007 complement(991074..991490) 1 NC_004552.2 hypothetical protein 991490 3338007 CAB853 Chlamydophila abortus S26/3 hypothetical protein YP_220241.1 991074 R 218497 CDS YP_220242.1 62185457 3338008 997772..1000195 1 NC_004552.2 Similar to Clostridium perfringens stage III sporulation protein E SpoIIIE or CPE1676 SWALL:Q8XJS8 (EMBL:AP003191) (796 aa) fasta scores: E(): 1.2e-74, 34.2% id in 807 aa, and to Bacillus subtilis stage III sporulation protein E SpoIIIE SWALL:SP3E_BACSU (SWALL:P21458) (787 aa) fasta scores: E(): 1.1e-73, 34.78% id in 779 aa; DNA translocase FtsK 1000195 3338008 CAB855 Chlamydophila abortus S26/3 DNA translocase FtsK YP_220242.1 997772 D 218497 CDS YP_220243.1 62185458 3338009 1000200..1000988 1 NC_004552.2 Similar to Thermoanaerobacter tengcongensis metal-dependent hydrolases of the beta-lactamase superfamily I PhnP or TTE2624 SWALL:Q8R705 (EMBL:AE013202) (259 aa) fasta scores: E(): 3.1e-29, 38.39% id in 237 aa, and to Bacillus halodurans hypothetical protein BH4023 SWALL:Q9K5R5 (EMBL:AP001520) (264 aa) fasta scores: E(): 1.8e-27, 36.59% id in 235 aa; hydrolase 1000988 3338009 CAB856 Chlamydophila abortus S26/3 hydrolase YP_220243.1 1000200 D 218497 CDS YP_220244.1 62185459 3338010 1000985..1001647 1 NC_004552.2 Low simialrity to Leptospira interrogans SET family protein LA3978 SWALL:Q8EZ78 (EMBL:AE011553) (143 aa) fasta scores: E(): 9.5e-07, 37.16% id in 113 aa, and to Bradyrhizobium japonicum BLL5787 protein bll5787 SWALL:Q89I52 (EMBL:AP005956) (186 aa) fasta scores: E(): 0.00017, 34.82% id in 112 aa, and to Chlamydophila caviae SET domain protein CCA00889 SWALL:Q821Q0 (EMBL:AE016997) (220 aa) fasta scores: E(): 3.4e-87, 86.36% id in 220 aa; hypothetical protein 1001647 3338010 CAB857 Chlamydophila abortus S26/3 hypothetical protein YP_220244.1 1000985 D 218497 CDS YP_220245.1 62185460 3338011 complement(1001652..1002104) 1 NC_004552.2 Similar to Rickettsia conorii hypothetical protein RC1288 SWALL:Q92G37 (EMBL:AE008675) (154 aa) fasta scores: E(): 2.9e-20, 39.86% id in 148 aa, and to Sulfolobus tokodaii hypothetical protein ST0476 SWALL:Q975D2 (EMBL:AP000982) (149 aa) fasta scores: E(): 5.2e-20, 43.87% id in 155 aa; hypothetical protein 1002104 3338011 CAB858 Chlamydophila abortus S26/3 hypothetical protein YP_220245.1 1001652 R 218497 CDS YP_220246.1 62185461 3338012 complement(1002118..1003494) 1 NC_004552.2 Similar to Streptococcus pyogenes amino acid symporter SPYM18_1219 SWALL:AAL97831 (EMBL:AE010046) (440 aa) fasta scores: E(): 1.7e-41, 31.96% id in 438 aa, and to Clostridium perfringens probable amino acid transport protein CPE1419 SWALL:Q8XKH6 (EMBL:AP003190) (462 aa) fasta scores: E(): 4e-41, 31.18% id in 465 aa; transport-related membrane protein 1003494 3338012 CAB859 Chlamydophila abortus S26/3 transport-related membrane protein YP_220246.1 1002118 R 218497 CDS YP_220247.1 62185462 3338013 complement(1003604..1004248) 1 NC_004552.2 Similar to Chlamydia pneumoniae probable lipoprotein CPN0875/CP0994/CPJ0875 precursor CPN0875 or CP0994 or CPJ0875 SWALL:Y875_CHLPN (SWALL:Q9Z731) (217 aa) fasta scores: E(): 2e-53, 71.42% id in 217 aa, and to Chlamydia muridarum hypothetical lipoprotein TC0107 precursor SWALL:Y107_CHLMU (SWALL:Q9PLJ2) (218 aa) fasta scores: E(): 2.4e-43, 59.81% id in 219 aa; lipoprotein 1004248 3338013 CAB860 Chlamydophila abortus S26/3 lipoprotein YP_220247.1 1003604 R 218497 CDS YP_220248.1 62185463 3338014 1004484..1005851 1 NC_004552.2 Similar to Chlamydia pneumoniae CT733 hypothetical protein CPN0874 or CPJ0874 or CP0995 SWALL:Q9Z732 (EMBL:AE001667) (453 aa) fasta scores: E(): 9.5e-123, 68.27% id in 457 aa, and to Chlamydia trachomatis hypothetical protein CT733 SWALL:O84738 (EMBL:AE001344) (448 aa) fasta scores: E(): 8.1e-109, 59.64% id in 456 aa; hypothetical protein 1005851 3338014 CAB861 Chlamydophila abortus S26/3 hypothetical protein YP_220248.1 1004484 D 218497 CDS YP_220249.1 62185464 3338087 complement(1005869..1006333) 1 NC_004552.2 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1006333 ribH 3338087 ribH Chlamydophila abortus S26/3 6,7-dimethyl-8-ribityllumazine synthase YP_220249.1 1005869 R 218497 CDS YP_220250.1 62185465 3338083 complement(1006346..1007611) 1 NC_004552.2 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 1007611 ribA 3338083 ribA Chlamydophila abortus S26/3 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_220250.1 1006346 R 218497 CDS YP_220251.1 62185466 3338085 complement(1007694..1008800) 1 NC_004552.2 Similar to Escherichia coli riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) or RibG or B0414 SWALL:RIBD_ECOLI (SWALL:P25539) (367 aa) fasta scores: E(): 6.2e-44, 42.98% id in 335 aa, and to Actinobacillus pleuropneumoniae riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (riboflavin-specific deaminase); 5-amino-6-(5- phosphoribosylamino)uracil reductase (EC 1.1.1.193) or RibG SWALL:RIBD_ACTPL (SWALL:P50853) (376 aa) fasta scores: E(): 4.2e-47, 39.66% id in 363 aa; riboflavin biosynthesis protein RibD 1008800 ribD 3338085 ribD Chlamydophila abortus S26/3 riboflavin biosynthesis protein RibD YP_220251.1 1007694 R 218497 CDS YP_220252.1 62185467 3338205 1008845..1010119 1 NC_004552.2 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1010119 serS 3338205 serS Chlamydophila abortus S26/3 seryl-tRNA synthetase YP_220252.1 1008845 D 218497 CDS YP_220253.1 62185468 3338015 1010191..1010934 1 NC_004552.2 Similar to Chlamydia pneumoniae CT728 hypothetical protein CPN0869 or CPJ0869 or CP1000 SWALL:Q9Z737 (EMBL:AE001667) (248 aa) fasta scores: E(): 3.5e-64, 64.91% id in 248 aa, and to Chlamydia muridarum hypothetical protein TC0101 SWALL:Q9PLJ8 (EMBL:AE002277) (248 aa) fasta scores: E(): 6.3e-57, 54.03% id in 248 aa; hypothetical protein 1010934 3338015 CAB866 Chlamydophila abortus S26/3 hypothetical protein YP_220253.1 1010191 D 218497 CDS YP_220254.1 62185469 3338016 1010950..1012923 1 NC_004552.2 Similar to Bacillus firmus probable cadmium-transporting ATPase CadA SWALL:CADA_BACFI (SWALL:P30336) (723 aa) fasta scores: E(): 4.2e-61, 32.78% id in 665 aa, and to Mycobacterium tuberculosis probable cation-transporting P-type ATPase D CtpD or Rv1469 or MT1515 or MTV007.16 SWALL:CTPD_MYCTU (SWALL:O53160) (657 aa) fasta scores: E(): 1e-53, 33.91% id in 634 aa; cation transport related membrane protein 1012923 3338016 CAB867 Chlamydophila abortus S26/3 cation transport related membrane protein YP_220254.1 1010950 D 218497 CDS YP_220255.1 62185470 3338017 complement(1012927..1014066) 1 NC_004552.2 Similar to Pseudomonas aeruginosa rod shape-determining protein RodA or PA4002 SWALL:Q9X6V4 (EMBL:AF147448) (367 aa) fasta scores: E(): 1.7e-25, 29.8% id in 359 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri rod shape-determining protein RodA or MrdB or B0634 or Z0780 or ECS0672 or SF0647 or s0669 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 7e-25, 28.53% id in 354 aa; rod shape-determining protein 1014066 3338017 CAB868 Chlamydophila abortus S26/3 rod shape-determining protein YP_220255.1 1012927 R 218497 CDS YP_220256.1 62185471 3337630 1014102..1014674 1 NC_004552.2 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1014674 birA 3337630 birA Chlamydophila abortus S26/3 biotin--protein ligase YP_220256.1 1014102 D 218497 CDS YP_220257.1 62185472 3338018 complement(1014648..1015175) 1 NC_004552.2 Similar to Chlamydia pneumoniae CT724 hypothetical protein CPN0865 or CPJ0865 or CP1004 SWALL:Q9Z741 (EMBL:AE001667) (175 aa) fasta scores: E(): 1.1e-27, 48.27% id in 174 aa, and to Chlamydia muridarum hypothetical protein TC0097 SWALL:Q9PLK2 (EMBL:AE002277) (174 aa) fasta scores: E(): 3e-13, 28.82% id in 170 aa. Contains a possible N-terminal membrane spanning domain.; hypothetical protein 1015175 3338018 CAB870 Chlamydophila abortus S26/3 hypothetical protein YP_220257.1 1014648 R 218497 CDS YP_220258.1 62185473 3338088 complement(1015218..1015916) 1 NC_004552.2 Similar to Thermotoga maritima 16S pseudouridylate synthase TM0264 SWALL:Q9WYA2 (EMBL:AE001708) (239 aa) fasta scores: E(): 1.2e-27, 41.04% id in 229 aa, and to Bacillus subtilis ribosomal large subunit pseudouridine synthase B RluB SWALL:RLUB_BACSU (SWALL:P35159) (229 aa) fasta scores: E(): 2.6e-22, 37.16% id in 226 aa; 16S pseudouridine synthase 1015916 rluB 3338088 rluB Chlamydophila abortus S26/3 16S pseudouridine synthase YP_220258.1 1015218 R 218497 CDS YP_220259.1 62185474 3338019 1016074..1016757 1 NC_004552.2 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1016757 3338019 CAB872 Chlamydophila abortus S26/3 phosphoglyceromutase YP_220259.1 1016074 D 218497 CDS YP_220260.1 62185475 3338020 1016712..1017869 1 NC_004552.2 Similar to Anabaena azollae cysteine desulfurase NifS SWALL:NIFS_ANAAZ (SWALL:Q43884) (400 aa) fasta scores: E(): 1.4e-11, 23.01% id in 391 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cysteine desulfurase IscS or B2530 or C3056 or Z3797 or ECS3396 or SF2577 or S2749 SWALL:ISCS_ECOLI (SWALL:P39171) (404 aa) fasta scores: E(): 2.6e-11, 21.66% id in 300 aa; cysteine desulfurase 1017869 3338020 CAB873 Chlamydophila abortus S26/3 cysteine desulfurase YP_220260.1 1016712 D 218497 CDS YP_220261.1 62185476 3338021 1017866..1018687 1 NC_004552.2 Similar to Campylobacter jejuni NifU protein homolog CJ0239C SWALL:Q9PIQ5 (EMBL:AL139074) (323 aa) fasta scores: E(): 2.6e-09, 25.16% id in 310 aa, and to Rhodobacter sphaeroides nitrogen fixation protein NifU SWALL:NIFU_RHOSH (SWALL:Q01180) (246 aa) fasta scores: E(): 0.00085, 24.51% id in 204 aa, and to Chlamydia pneumoniae NifU-related protein CPN0861 or CPJ0861 SWALL:Q9Z745 (EMBL:AE001667) (266 aa) fasta scores: E(): 2.3e-70, 64.39% id in 264 aa; NifU-related protein 1018687 3338021 CAB874 Chlamydophila abortus S26/3 NifU-related protein YP_220261.1 1017866 D 218497 CDS YP_220262.1 62185477 3338022 1018791..1019804 1 NC_004552.2 Similar to Chlamydia pneumoniae flagellar M-ring protein FliF or CPN0860 or CP1009 SWALL:Q9Z746 (EMBL:AE001667) (341 aa) fasta scores: E(): 1.4e-61, 54.86% id in 339 aa, and to Chlamydia trachomatis flagellar M-ring protein FliF or CT719 SWALL:O84724 (EMBL:AE001342) (334 aa) fasta scores: E(): 8.6e-44, 44.51% id in 337 aa; type III secretion system protein 1019804 3338022 CAB875 Chlamydophila abortus S26/3 type III secretion system protein YP_220262.1 1018791 D 218497 CDS YP_220263.1 62185478 3338023 1019828..1020379 1 NC_004552.2 Similar to Chlamydia pneumoniae CT718 hypothetical protein CPN0859 or CPJ0859 or CP1010 SWALL:Q9Z747 (EMBL:AE001667) (178 aa) fasta scores: E(): 7.9e-42, 65.38% id in 182 aa, and to Chlamydia muridarum hypothetical protein TC0091 SWALL:Q9PLK8 (EMBL:AE002276) (174 aa) fasta scores: E(): 1.6e-30, 60.43% id in 139 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1020379 3338023 CAB876 Chlamydophila abortus S26/3 hypothetical protein YP_220263.1 1019828 D 218497 CDS YP_220264.1 62185479 3338024 1020376..1021680 1 NC_004552.2 involved in type III protein export; type III secretion system ATPase 1021680 3338024 CAB877 Chlamydophila abortus S26/3 type III secretion system ATPase YP_220264.1 1020376 D 218497 CDS YP_220265.1 62185480 3338025 1021673..1022047 1 NC_004552.2 Similar to Chlamydia pneumoniae CT716 hypothetical protein CPN0857 or CPJ0857 or CP1012 SWALL:Q9Z749 (EMBL:AE001667) (122 aa) fasta scores: E(): 4.6e-13, 46.72% id in 122 aa, and to Chlamydia muridarum hypothetical protein TC0089 SWALL:Q9PLL0 (EMBL:AE002276) (120 aa) fasta scores: E(): 1.1e-09, 40% id in 115 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1022047 3338025 CAB878 Chlamydophila abortus S26/3 hypothetical protein YP_220265.1 1021673 D 218497 CDS YP_220266.1 62185481 3338026 1022053..1023435 1 NC_004552.2 Similar to Chlamydia pneumoniae UDP-glucose pyrophosphorylase CPN0856 or CPJ0856 or CP1013 SWALL:Q9Z750 (EMBL:AE001667) (461 aa) fasta scores: E(): 4.1e-167, 85.68% id in 461 aa, and to Homo sapiens UDP-N-acetylhexosamine pyrophosphorylase Uap1 or SpaG2 SWALL:UAP1_HUMAN (SWALL:Q16222) (522 aa) fasta scores: E(): 1.4e-23, 28.47% id in 432 aa; UDP-N-acetylhexosamine pyrophosphorylase 1023435 3338026 CAB879 Chlamydophila abortus S26/3 UDP-N-acetylhexosamine pyrophosphorylase YP_220266.1 1022053 D 218497 CDS YP_220267.1 62185482 3338027 1023432..1024436 1 NC_004552.2 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1024436 gpsA 3338027 gpsA Chlamydophila abortus S26/3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_220267.1 1023432 D 218497 CDS YP_220268.1 62185483 3338028 1024568..1025602 1 NC_004552.2 Similar to Chlamydia pneumoniae outer membrane protein B precursor OmpB or PorB or CPN0854 or CP1015 SWALL:OMP2_CHLPN (SWALL:Q9Z752) (344 aa) fasta scores: E(): 8.9e-100, 68.31% id in 344 aa, and to Chlamydophila felis major outer membrane protein precursor OmpA SWALL:Q99QB0 (EMBL:AF269257) (392 aa) fasta scores: E(): 3.8e-05, 22.71% id in 339 aa; exported outer membrane protein 1025602 3338028 CAB881 Chlamydophila abortus S26/3 exported outer membrane protein YP_220268.1 1024568 D 218497 CDS YP_220269.1 62185484 3338029 complement(1025599..1026765) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein CT712 SWALL:O84718 (EMBL:AE001342) (390 aa) fasta scores: E(): 6.5e-85, 63.01% id in 392 aa, and to Chlamydia muridarum hypothetical protein TC0085 SWALL:Q9PLL4 (EMBL:AE002276) (390 aa) fasta scores: E(): 6.6e-81, 58.41% id in 392 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1026765 3338029 CAB882 Chlamydophila abortus S26/3 hypothetical protein YP_220269.1 1025599 R 218497 CDS YP_220270.1 62185485 3338030 complement(1026774..1029014) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein CT711 SWALL:O84717 (EMBL:AE001342) (767 aa) fasta scores: E(): 4.1e-71, 44.68% id in 772 aa, and to Chlamydia muridarum hypothetical protein TC0084 SWALL:Q9PLL5 (EMBL:AE002276) (769 aa) fasta scores: E(): 3.2e-70, 43.33% id in 773 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1029014 3338030 CAB883 Chlamydophila abortus S26/3 hypothetical protein YP_220270.1 1026774 R 218497 CDS YP_220271.1 62185486 3338031 complement(1029129..1030940) 1 NC_004552.2 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1030940 3338031 CAB884 Chlamydophila abortus S26/3 phosphoenolpyruvate carboxykinase YP_220271.1 1029129 R 218497 CDS YP_220272.1 62185487 3338032 complement(1030937..1031989) 1 NC_004552.2 Similar to Bacillus subtilis rod shape-determining protein MreB SWALL:MREB_BACSU (SWALL:Q01465) (337 aa) fasta scores: E(): 1.4e-64, 55.06% id in 336 aa, and to Escherichia coli, Escherichia coli O6, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 1e-63, 57.73% id in 336 aa; rod shape-determining protein MreB 1031989 3338032 CAB885 Chlamydophila abortus S26/3 rod shape-determining protein MreB YP_220272.1 1030937 R 218497 CDS YP_220273.1 62185488 3338033 complement(1032042..1035539) 1 NC_004552.2 Similar to Clostridium acetobutylicum superfamily II DNA/RNA helicases, Snf2 family CAC3303 SWALL:Q97E16 (EMBL:AE007827) (1077 aa) fasta scores: E(): 2e-73, 29.38% id in 1181 aa, and to Fusobacterium nucleatum SWF/SNF family helicase FN1160 SWALL:Q8REE7 (EMBL:AE010621) (1089 aa) fasta scores: E(): 2.2e-56, 29.64% id in 1130 aa; helicase 1035539 3338033 CAB886 Chlamydophila abortus S26/3 helicase YP_220273.1 1032042 R 218497 CDS YP_220274.1 62185489 3338218 1035835..1037160 1 NC_004552.2 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1037160 tig 3338218 tig Chlamydophila abortus S26/3 trigger factor YP_220274.1 1035835 D 218497 CDS YP_220275.1 62185490 3337633 1037333..1037950 1 NC_004552.2 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1037950 clpP 3337633 clpP Chlamydophila abortus S26/3 ATP-dependent Clp protease proteolytic subunit YP_220275.1 1037333 D 218497 CDS YP_220276.1 62185491 3337635 1037960..1039225 1 NC_004552.2 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1039225 clpX 3337635 clpX Chlamydophila abortus S26/3 ATP-dependent protease ATP-binding subunit ClpX YP_220276.1 1037960 D 218497 CDS YP_220277.1 62185492 3338034 1039255..1040487 1 NC_004552.2 Similar to Chlamydia pneumoniae poly A polymerase PcnB_1 or CPN0845 or CP1024 SWALL:Q9Z761 (EMBL:AE001665) (410 aa) fasta scores: E(): 3.9e-138, 81.22% id in 410 aa, and to Bacillus subtilis poly A polymerase PapS SWALL:PAPS_BACSU (SWALL:P42977) (397 aa) fasta scores: E(): 1.2e-29, 34.21% id in 415 aa; poly A polymerase 1040487 3338034 CAB890 Chlamydophila abortus S26/3 poly A polymerase YP_220277.1 1039255 D 218497 CDS YP_220278.1 62185493 3337827 1040610..1042034 1 NC_004552.2 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1042034 engA 3337827 engA Chlamydophila abortus S26/3 GTP-binding protein EngA YP_220278.1 1040610 D 218497 CDS YP_220279.1 62185494 3338203 complement(1042695..1045604) 1 NC_004552.2 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1045604 secA 3338203 secA Chlamydophila abortus S26/3 preprotein translocase subunit SecA YP_220279.1 1042695 R 218497 CDS YP_220280.1 62185495 3337829 complement(1045790..1047115) 1 NC_004552.2 Similar to Chlamydophila caviae hypothetical protein CCA00926 SWALL:Q821L4 (EMBL:AE016997) (441 aa) fasta scores: E(): 7e-170, 89.34% id in 441 aa, and to Chlamydia muridarum hypothetical protein TC0073 SWALL:Q9PLM6 (EMBL:AE002274) (441 aa) fasta scores: E(): 4.2e-119, 60.54% id in 441 aa. Note contains a possible N-terminal membrane spanning domain.; hypothetical protein 1047115 3337829 CAB895 Chlamydophila abortus S26/3 hypothetical protein YP_220280.1 1045790 R 218497 CDS YP_220281.1 62185496 3337830 complement(1047181..1048080) 1 NC_004552.2 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1048080 3337830 CAB896 Chlamydophila abortus S26/3 phosphatidylserine decarboxylase YP_220281.1 1047181 R 218497 CDS YP_220282.1 62185497 3337498 1048237..1049568 1 NC_004552.2 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1049568 trmE 3337498 trmE Chlamydophila abortus S26/3 tRNA modification GTPase TrmE YP_220282.1 1048237 D 218497 CDS YP_220283.1 62185498 3337831 1049558..1050217 1 NC_004552.2 Similar to Chlamydia muridarum endonuclease III SWALL:Q9PLN0 (EMBL:AE002274) (210 aa) fasta scores: E(): 1.4e-56, 68.34% id in 199 aa, and to Micrococcus luteus ultraviolet N-glycosylase/ap lyase Pdg SWALL:UVEN_MICLU (SWALL:P46303) (279 aa) fasta scores: E(): 3.2e-18, 39.15% id in 189 aa; DNA repair protein 1050217 3337831 CAB898 Chlamydophila abortus S26/3 DNA repair protein YP_220283.1 1049558 D 218497 CDS YP_220284.1 62185499 3337832 1050371..1051600 1 NC_004552.2 Similar to Chlamydia pneumoniae branched-chain amino acid transport system carrier protein, Cp1033 SWALL:Q9K1T5 (EMBL:AE002260) (412 aa) fasta scores: E(): 2.4e-116, 72.57% id in 412 aa, and to Lactobacillus delbrueckii branched-chain amino acid transport system carrier protein BrnQ SWALL:BRNQ_LACDL (SWALL:P54104) (446 aa) fasta scores: E(): 1.2e-21, 28.71% id in 397 aa, and to Escherichia coli branched-chain amino acid transport system II carrier protein BrnQ SWALL:BRNQ_ECOLI (SWALL:P37011) (439 aa) fasta scores: E(): 1.4e-13, 26.35% id in 387 aa; branched-chain amino acid transport protein 1051600 3337832 CAB899 Chlamydophila abortus S26/3 branched-chain amino acid transport protein YP_220284.1 1050371 D 218497 CDS YP_220285.1 62185500 3337833 1051635..1055255 1 NC_004552.2 Similar to Chlamydia pneumoniae Swi/Snf family helicase_1 SWALL:Q9Z771 (EMBL:AE001664) (1215 aa) fasta scores: E(): 0, 68.01% id in 1210 aa, and to Plasmodium falciparum Pfsnf2l SWALL:O00914 (EMBL:AF003086) (1422 aa) fasta scores: E(): 8.5e-40, 31.1% id in 508 aa, and to Mus musculus DNA-dependent ATPase Snf2l Smarca1 or Snf2L SWALL:Q91Y58 (EMBL:AF325920) (1064 aa) fasta scores: E(): 4.7e-34, 31.16% id in 616 aa; DNA helicase-related protein 1055255 3337833 CAB900 Chlamydophila abortus S26/3 DNA helicase-related protein YP_220285.1 1051635 D 218497 CDS YP_220286.1 62185501 3337834 complement(1055279..1055743) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z772 (EMBL:AE001664) (154 aa) fasta scores: E(): 2.5e-45, 76.38% id in 144 aa; hypothetical protein 1055743 3337834 CAB901 Chlamydophila abortus S26/3 hypothetical protein YP_220286.1 1055279 R 218497 CDS YP_220287.1 62185502 3337660 1056005..1057393 1 NC_004552.2 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1057393 pdhD 3337660 pdhD Chlamydophila abortus S26/3 dihydrolipoamide dehydrogenase YP_220287.1 1056005 D 218497 CDS YP_220288.1 62185503 3337451 1057390..1058322 1 NC_004552.2 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1058322 lipA3 3337451 lipA3 Chlamydophila abortus S26/3 lipoyl synthase YP_220288.1 1057390 D 218497 CDS YP_220289.1 62185504 3337835 1058534..1059526 1 NC_004552.2 Similar to Chlamydia pneumoniae Yop translocation protein J SWALL:Q9Z778 (EMBL:AE001663) (335 aa) fasta scores: E(): 1.4e-96, 80.53% id in 334 aa, and to Burkholderia pseudomallei SctJ SWALL:Q93KZ5 (EMBL:AF074878) (274 aa) fasta scores: E(): 3.2e-13, 35.13% id in 185 aa; type III export protein 1059526 3337835 CAB904 Chlamydophila abortus S26/3 type III export protein YP_220289.1 1058534 D 218497 CDS YP_220290.1 62185505 3337836 1059526..1060359 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z779 (EMBL:AE001663) (277 aa) fasta scores: E(): 2.7e-83, 70.39% id in 277 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1060359 3337836 CAB905 Chlamydophila abortus S26/3 hypothetical protein YP_220290.1 1059526 D 218497 CDS YP_220291.1 62185506 3337837 1060525..1061181 1 NC_004552.2 Similar to Chlamydia pneumoniae yop translocation l yscl or cpn0826 or cp1045 SWALL:Q9Z780 (EMBL:AE001663) (233 aa) fasta scores: E(): 4.1e-54, 74.05% id in 212 aa, and to Yersinia enterocolitica yop proteins translocation protein l yscL SWALL:YSCL_YEREN (SWALL:Q01253) (223 aa) fasta scores: E(): 2.4e-09, 25.12% id in 199 aa; type III secretion system protein 1061181 3337837 CAB906 Chlamydophila abortus S26/3 type III secretion system protein YP_220291.1 1060525 D 218497 CDS YP_220292.1 62185507 3337838 1061196..1062113 1 NC_004552.2 Similar to Chlamydia pneumoniae Yop translocation protein R SWALL:Q9Z781 (EMBL:AE001663) (306 aa) fasta scores: E(): 8.8e-90, 81.1% id in 307 aa, and to Ralstonia solanacearum hypersensitivity response secretion protein HrcR or HrpT SWALL:HRCR_RALSO (SWALL:Q52488) (217 aa) fasta scores: E(): 3e-27, 38.63% id in 220 aa; type III secretion system protein 1062113 3337838 CAB907 Chlamydophila abortus S26/3 type III secretion system protein YP_220292.1 1061196 D 218497 CDS YP_220293.1 62185508 3337839 1062123..1062407 1 NC_004552.2 Similar to Chlamydia pneumoniae YopS translocation protein SWALL:Q9Z782 (EMBL:AE001663) (95 aa) fasta scores: E(): 1.4e-31, 90.52% id in 95 aa, and to Yersinia pestis Yop protein translocation protein S SWALL:YSCS_YERPE (SWALL:P40298) (88 aa) fasta scores: E(): 1.5e-09, 43.05% id in 72 aa, and to Escherichia coli EscS SWALL:Q9AJ28 (EMBL:AF200363) (89 aa) fasta scores: E(): 6.4e-09, 41.33% id in 75 aa; type III export protein 1062407 3337839 CAB908 Chlamydophila abortus S26/3 type III export protein YP_220293.1 1062123 D 218497 CDS YP_220294.1 62185509 3337840 1062414..1063283 1 NC_004552.2 Similar to Chlamydia pneumoniae YopT tranlocation protein SWALL:Q9Z783 (EMBL:AE001663) (289 aa) fasta scores: E(): 3.6e-99, 82% id in 289 aa, and to Salmonella typhimurium secretion system apparatus protein SsaT or stm1421 SWALL:SSAT_SALTY (SWALL:P96068) (259 aa) fasta scores: E(): 2.3e-13, 27.27% id in 242 aa; type III export protein 1063283 3337840 CAB909 Chlamydophila abortus S26/3 type III export protein YP_220294.1 1062414 D 218497 CDS YP_220295.1 62185510 3337841 complement(1063373..1063816) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z784 (EMBL:AE001663) (158 aa) fasta scores: E(): 3.7e-35, 66.89% id in 145 aa; hypothetical protein 1063816 3337841 CAB910 Chlamydophila abortus S26/3 hypothetical protein YP_220295.1 1063373 R 218497 CDS YP_220296.1 62185511 3337842 complement(1063908..1064912) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z785 (EMBL:AE001662) (334 aa) fasta scores: E(): 8.5e-92, 69.16% id in 334 aa; hypothetical protein 1064912 3337842 CAB911 Chlamydophila abortus S26/3 hypothetical protein YP_220296.1 1063908 R 218497 CDS YP_220297.1 62185512 3337843 complement(1064915..1065457) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9K1T1 (EMBL:AE002261) (174 aa) fasta scores: E(): 1.4e-23, 46.38% id in 166 aa; periplasmic protein 1065457 3337843 CAB912 Chlamydophila abortus S26/3 periplasmic protein YP_220297.1 1064915 R 218497 CDS YP_220298.1 62185513 3337844 complement(1065442..1065885) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct568 hypothetical protein cpn0819 or cpj0819 SWALL:Q9Z787 (EMBL:AE001662) (148 aa) fasta scores: E(): 7.7e-32, 56.73% id in 141 aa; hypothetical protein 1065885 3337844 CAB913 Chlamydophila abortus S26/3 hypothetical protein YP_220298.1 1065442 R 218497 CDS YP_220299.1 62185514 3337988 complement(1065888..1066265) 1 NC_004552.2 Similar to Chlamydia pneumoniae outer membrane protein SWALL:OMPX_CHLPN (SWALL:Q9Z788) (123 aa) fasta scores: E(): 2.6e-33, 78.89% id in 109 aa, and to Legionella pneumophila LspG precursor SWALL:Q9XD71 (EMBL:AF111940) (140 aa) fasta scores: E(): 0.13, 23.42% id in 111 aa, and to Escherichia coli precursor HofG or HopG SWALL:GSPG_ECOLI (SWALL:P41442) (145 aa) fasta scores: E(): 1.1, 28.97% id in 107 aa; general secretion pathway protein G (periplasmic) 1066265 gspG 3337988 gspG Chlamydophila abortus S26/3 general secretion pathway protein G (periplasmic) YP_220299.1 1065888 R 218497 CDS YP_220300.1 62185515 3337987 complement(1066284..1067459) 1 NC_004552.2 Similar to Chlamydia pneumoniae general secretion protein F GspF SWALL:Q9Z789 (EMBL:AE001662) (391 aa) fasta scores: E(): 2.2e-107, 71.42% id in 392 aa, and to Pseudomonas aeruginosa general secretion pathway protein F xcps or pa3102 SWALL:GSPF_PSEAE (SWALL:Q00513) (405 aa) fasta scores: E(): 6.4e-28, 27.38% id in 409 aa; general secretion pathway protein F 1067459 gspF 3337987 gspF Chlamydophila abortus S26/3 general secretion pathway protein F YP_220300.1 1066284 R 218497 CDS YP_220301.1 62185516 3337986 complement(1067470..1068963) 1 NC_004552.2 Similar to Pseudomonas aeruginosa general secretion pathway protein E XcpR SWALL:GSPE_PSEAE (SWALL:Q00512) (502 aa) fasta scores: E(): 6.1e-69, 47.63% id in 487 aa, and to Chlamydia pneumoniae genral secretion protein E GspE SWALL:Q9Z790 (EMBL:AE001662) (496 aa) fasta scores: E(): 2.3e-133, 75.86% id in 493 aa; general secretion pathway protein E 1068963 gspE 3337986 gspE Chlamydophila abortus S26/3 general secretion pathway protein E YP_220301.1 1067470 R 218497 CDS YP_220302.1 62185517 3337985 complement(1068953..1071214) 1 NC_004552.2 Similar to Escherichia coli probable general secretion pathway protein D precursor GspD SWALL:GSPD_ECOLI (SWALL:P45758) (650 aa) fasta scores: E(): 5.8e-13, 21.23% id in 617 aa, and to Chlamydia pneumoniae general secretion protein D GspD SWALL:Q9Z791 (EMBL:AE001662) (754 aa) fasta scores: E(): 9.2e-217, 71.22% id in 754 aa, and to Aeromonas salmonicida general secretion pathway protein D precursor ExeD SWALL:GSPD_AERSA (SWALL:P45778) (678 aa) fasta scores: E(): 1.3e-10, 20.03% id in 599 aa; general secretion pathway protein D 1071214 gspD 3337985 gspD Chlamydophila abortus S26/3 general secretion pathway protein D YP_220302.1 1068953 R 218497 CDS YP_220303.1 62185518 3337845 complement(1071215..1072528) 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein cpn0814 SWALL:Q9Z792 (EMBL:AE001662) (417 aa) fasta scores: E(): 4.3e-109, 61% id in 418 aa, and to Chlamydia trachomatis hypothetical protein Ct573 SWALL:O84577 (EMBL:AE001327) (409 aa) fasta scores: E(): 4.5e-76, 50.24% id in 406 aa. Note possible alternative translational start site at codon 20. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1072528 3337845 CAB918 Chlamydophila abortus S26/3 hypothetical protein YP_220303.1 1071215 R 218497 CDS YP_220304.1 62185519 3337846 complement(1072649..1073719) 1 NC_004552.2 Similar to Chlamydia pneumoniae aminopeptidase P PepP SWALL:Q9Z793 (EMBL:AE001662) (355 aa) fasta scores: E(): 2.3e-91, 62.64% id in 356 aa, and to Pyrococcus furiosus Xaa-Pro dipeptidase PepQ SWALL:PEPQ_PYRFU (SWALL:P81535) (348 aa) fasta scores: E(): 8.1e-35, 32.09% id in 349 aa; peptidase 1073719 3337846 CAB919 Chlamydophila abortus S26/3 peptidase YP_220304.1 1072649 R 218497 CDS YP_220305.1 62185520 3337462 complement(1073723..1075471) 1 NC_004552.2 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1075471 mutL 3337462 mutL Chlamydophila abortus S26/3 DNA mismatch repair protein YP_220305.1 1073723 R 218497 CDS YP_220306.1 62185521 3337847 1075699..1076382 1 NC_004552.2 Similar to Chlamydia muridarum type III secretion chaperone SycD SWALL:Q9PJG4 (EMBL:AE002353) (246 aa) fasta scores: E(): 1e-66, 77.82% id in 230 aa, and to Yersinia pseudotuberculosis low calcium response locus protein H LcrH SWALL:LCRH_YERPS (SWALL:P23995) (168 aa) fasta scores: E(): 6.3e-07, 26.31% id in 152 aa; regulatory protein 1076382 3337847 CAB921 Chlamydophila abortus S26/3 regulatory protein YP_220306.1 1075699 D 218497 CDS YP_220307.1 62185522 3337973 1076406..1076795 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z796 (EMBL:AE001662) (120 aa) fasta scores: E(): 1.3e-13, 48% id in 125 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1076795 3337973 CAB922 Chlamydophila abortus S26/3 hypothetical protein YP_220307.1 1076406 D 218497 CDS YP_220308.1 62185523 3337623 1076834..1078318 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0867 SWALL:Q9PJG2 (EMBL:AE002353) (491 aa) fasta scores: E(): 1.6e-91, 63.17% id in 497 aa; hypothetical protein 1078318 3337623 CAB923 Chlamydophila abortus S26/3 hypothetical protein YP_220308.1 1076834 D 218497 CDS YP_220309.1 62185524 3337624 1078348..1079670 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0868 SWALL:Y868_CHLMU (SWALL:Q9PJG1) (436 aa) fasta scores: E(): 2.6e-76, 65.76% id in 444 aa; hypothetical protein 1079670 3337624 CAB924 Chlamydophila abortus S26/3 hypothetical protein YP_220309.1 1078348 D 218497 CDS YP_220310.1 62185525 3337625 complement(1079746..1080648) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0869 SWALL:Q9PJG0 (EMBL:AE002353) (318 aa) fasta scores: E(): 5.1e-79, 67.55% id in 302 aa, and to Bacillus subtilis hypothetical transport protein YoaV SWALL:YOAV_BACSU (SWALL:O34416) (292 aa) fasta scores: E(): 4.1e-09, 21.83% id in 284 aa; exported membrane protein 1080648 3337625 CAB925 Chlamydophila abortus S26/3 exported membrane protein YP_220310.1 1079746 R 218497 CDS YP_220311.1 62185526 3338217 1080854..1082761 1 NC_004552.2 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1082761 thrS 3338217 thrS Chlamydophila abortus S26/3 threonyl-tRNA synthetase YP_220311.1 1080854 D 218497 CDS YP_220312.1 62185527 3337626 1082792..1083559 1 NC_004552.2 Similar to Chlamydia pneumoniae ParA family protein SWALL:PARA_CHLPN (SWALL:Q9Z7A1) (255 aa) fasta scores: E(): 1.1e-93, 90.98% id in 255 aa, and to Chlamydia trachomatis virulence plasmid ParA family protein pgp5-d SWALL:GP5D_CHLTR (SWALL:P10559) (264 aa) fasta scores: E(): 3.9e-28, 37% id in 254 aa; chromosome partitioning protein 1083559 3337626 CAB927 Chlamydophila abortus S26/3 chromosome partitioning protein YP_220312.1 1082792 D 218497 CDS YP_220313.1 62185528 3337627 1083564..1084316 1 NC_004552.2 Similar to Chlamydia muridarum virulence plasmid protein pgp6-D-related protein tc0872 SWALL:GP6R_CHLMU (SWALL:Q9PJF7) (262 aa) fasta scores: E(): 3.3e-66, 71.59% id in 250 aa, and to Chlamydia trachomatis virulence plasmid protein pgp6-d SWALL:GP6D_CHLTR (SWALL:P10560) (247 aa) fasta scores: E(): 3.4e-10, 30.46% id in 256 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1084316 3337627 CAB928 Chlamydophila abortus S26/3 hypothetical protein YP_220313.1 1083564 D 218497 CDS YP_220314.1 62185529 3337628 1084319..1084873 1 NC_004552.2 Similar to Chlamydia pneumoniae protein SWALL:Y803_CHLPN (SWALL:Q9Z7A3) (184 aa) fasta scores: E(): 6.1e-62, 86.95% id in 184 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1084873 3337628 CAB929 Chlamydophila abortus S26/3 hypothetical protein YP_220314.1 1084319 D 218497 CDS YP_220315.1 62185530 3338231 1084885..1085922 1 NC_004552.2 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1085922 trpS 3338231 trpS Chlamydophila abortus S26/3 tryptophanyl-tRNA synthetase YP_220315.1 1084885 D 218497 CDS YP_220316.1 62185531 3338239 1085938..1087908 1 NC_004552.2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1087908 uvrB 3338239 uvrB Chlamydophila abortus S26/3 excinuclease ABC subunit B YP_220316.1 1085938 D 218497 CDS YP_220317.1 62185532 3338035 1088083..1089357 1 NC_004552.2 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1089357 eno 3338035 eno Chlamydophila abortus S26/3 phosphopyruvate hydratase YP_220317.1 1088083 D 218497 CDS YP_220318.1 62185533 3337937 1089613..1091520 1 NC_004552.2 Similar to Chlamydia pneumoniae sigma regulatory family protein-PP2c phosphatase RbsU SWALL:Q9Z7B3 (EMBL:AE001660) (635 aa) fasta scores: E(): 1.8e-165, 65.98% id in 632 aa, and to the C-terminus of Bacillus subtilis phosphoserine phosphatase sigma factor SigB regulation protein, RsbU SWALL:RSBU_BACSU (SWALL:P40399) (335 aa) fasta scores: E(): 1.2e-09, 24.8% id in 250 aa; regulatory protein 1091520 3337937 CAB933 Chlamydophila abortus S26/3 regulatory protein YP_220318.1 1089613 D 218497 CDS YP_220319.1 62185534 3337938 1091517..1093337 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein SWALL:Q9Z7B4 (EMBL:AE001660) (604 aa) fasta scores: E(): 2.3e-150, 62.37% id in 606 aa; hypothetical protein 1093337 3337938 CAB934 Chlamydophila abortus S26/3 hypothetical protein YP_220319.1 1091517 D 218497 CDS YP_220320.1 62185535 3337939 1093897..1096788 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct590 SWALL:O84594 (EMBL:AE001329) (954 aa) fasta scores: E(): 0, 58.77% id in 963 aa. Note the differing N-termini. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1096788 3337939 CAB935 Chlamydophila abortus S26/3 hypothetical protein YP_220320.1 1093897 D 218497 CDS YP_220321.1 62185536 3338201 complement(1096785..1097576) 1 NC_004552.2 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1097576 sdhB 3338201 sdhB Chlamydophila abortus S26/3 succinate dehydrogenase iron-sulfur subunit YP_220321.1 1096785 R 218497 CDS YP_220322.1 62185537 3338200 complement(1097591..1099474) 1 NC_004552.2 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1099474 sdhA 3338200 sdhA Chlamydophila abortus S26/3 succinate dehydrogenase flavoprotein subunit YP_220322.1 1097591 R 218497 CDS YP_220323.1 62185538 3338202 complement(1099479..1100375) 1 NC_004552.2 Similar to Chlamydia pneumoniae succinate dehydrogenase SdhC or cpn0788 or cp1084 SWALL:Q9Z7B8 (EMBL:AE001660) (297 aa) fasta scores: E(): 1.2e-82, 62.62% id in 297 aa, and to Bacillus subtilis succinate dehydrogenase cytochrome b-558 subunit SdhC SWALL:DHSC_BACSU (SWALL:P08064) (202 aa) fasta scores: E(): 0.015, 24.26% id in 272 aa; succinate dehydrogenase subunit 1100375 sdhC 3338202 sdhC Chlamydophila abortus S26/3 succinate dehydrogenase subunit YP_220323.1 1099479 R 218497 CDS YP_220324.1 62185539 3337940 complement(1100467..1101267) 1 NC_004552.2 Similar to Chlamydia pneumoniae PHP superfamily yabd or cpn0787 or cp1085 SWALL:Q9Z7B9 (EMBL:AE001660) (261 aa) fasta scores: E(): 6.3e-78, 69.84% id in 262 aa, and to Brucella melitensis sec-independent protein TatD bmei0986 SWALL:Q8YH18 (EMBL:AE009539) (265 aa) fasta scores: E(): 3.3e-34, 39.46% id in 261 aa; hypothetical protein 1101267 3337940 CAB939 Chlamydophila abortus S26/3 hypothetical protein YP_220324.1 1100467 R 218497 CDS YP_220325.1 62185540 3337653 complement(1101437..1103575) 1 NC_004552.2 Similar to Chlamydia pneumoniae thiol:disulfide interchange protein DsbD cp1086 SWALL:Q9K1S6 (EMBL:AE002265) (714 aa) fasta scores: E(): 4.5e-198, 70.84% id in 710 aa, and to Escherichia coli thiol:disulfide interchange protein DsbD precursor SWALL:DSBD_ECOLI (SWALL:P36655) (565 aa) fasta scores: E(): 1.2e-10, 27.44% id in 419 aa; thiol:disulfide interchange protein 1103575 dsbD 3337653 dsbD Chlamydophila abortus S26/3 thiol:disulfide interchange protein YP_220325.1 1101437 R 218497 CDS YP_220326.1 62185541 3337941 1103747..1104445 1 NC_004552.2 Similar to Chlamydia pneumoniae macromolecule transporter ExbB SWALL:Q9Z7C1 (EMBL:AE001659) (232 aa) fasta scores: E(): 1.8e-73, 85.34% id in 232 aa, and to Escherichia coli TolQ protein SWALL:TOLQ_ECOLI (SWALL:P05828) (230 aa) fasta scores: E(): 2.5e-06, 25.82% id in 213 aa; transport protein TolQ 1104445 3337941 CAB941 Chlamydophila abortus S26/3 transport protein TolQ YP_220326.1 1103747 D 218497 CDS YP_220327.1 62185542 3338037 1104442..1104849 1 NC_004552.2 Similar to Escherichia coli biopolymer transport ExbD protein SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 0.00012, 26.35% id in 129 aa, and to Chlamydia trachomatis biopolymer transport protein ExbD or ct597 SWALL:O84602 (EMBL:AE001330) (135 aa) fasta scores: E(): 2.3e-33, 68.14% id in 135 aa, and to Xanthomonas campestris biopolymer transport ExbD1 protein or Xcc0010 SWALL:EXB1_XANCP (SWALL:O34259) (140 aa) fasta scores: E(): 4.3e-06, 32.54% id in 126 aa; biopolymer transport protein ExbD 1104849 exbD 3338037 exbD Chlamydophila abortus S26/3 biopolymer transport protein ExbD YP_220327.1 1104442 D 218497 CDS YP_220328.1 62185543 3337942 1104852..1105610 1 NC_004552.2 Similar to Chlamydia pneumoniae ct598 hypothetical protein SWALL:Q9JRY0 (EMBL:AE002265) (262 aa) fasta scores: E(): 5.7e-19, 39.24% id in 265 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 0.2, 25.23% id in 214 aa; exported TonB protein 1105610 3337942 CAB943 Chlamydophila abortus S26/3 exported TonB protein YP_220328.1 1104852 D 218497 CDS YP_220329.1 62185544 3337943 1105630..1106913 1 NC_004552.2 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1106913 tolB 3337943 tolB Chlamydophila abortus S26/3 translocation protein TolB YP_220329.1 1105630 D 218497 CDS YP_220330.1 62185545 3337944 1106924..1107499 1 NC_004552.2 Similar to Chlamydia trachomatis peptidoglycan-associated lipoprotein Pal or ct600 SWALL:O84605 (EMBL:AE001330) (188 aa) fasta scores: E(): 2.7e-53, 72.25% id in 191 aa, and to Pseudomonas aeruginosa outer membrane protein OprL precursor or pa0973 SWALL:Q9I4Z4 (EMBL:AE004530) (168 aa) fasta scores: E(): 6e-13, 44.73% id in 114 aa, and to Escherichia coli peptidoglycan-associated lipoprotein precursor Pal or ExcC SWALL:PAL_ECOLI (SWALL:P07176) (173 aa) fasta scores: E(): 4.9e-12, 42.37% id in 118 aa; peptidoglycan-associated protein (periplasmic) 1107499 3337944 CAB945 Chlamydophila abortus S26/3 peptidoglycan-associated protein (periplasmic) YP_220330.1 1106924 D 218497 CDS YP_220331.1 62185546 3337945 1107489..1108106 1 NC_004552.2 Similar to Chlamydia pneumoniae N-acetylmuramoyl-L-ala amidase AmiB SWALL:Q9Z7C6 (EMBL:AE001659) (205 aa) fasta scores: E(): 3.1e-36, 62.08% id in 182 aa, and to Bacillus subtilis endopeptidase LytE precursor or PapQ or CwlF SWALL:LYTE_BACSU (SWALL:P54421) (334 aa) fasta scores: E(): 0.61, 26.79% id in 153 aa; periplasmic hydrolase 1108106 3337945 CAB946 Chlamydophila abortus S26/3 periplasmic hydrolase YP_220331.1 1107489 D 218497 CDS YP_220332.1 62185547 3337946 1108205..1108603 1 NC_004552.2 Similar to Chlamydia pneumoniae ct602 hypothetical protein SWALL:Q9Z7C7 (EMBL:AE001659) (129 aa) fasta scores: E(): 3.7e-39, 72.72% id in 132 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1108603 3337946 CAB947 Chlamydophila abortus S26/3 hypothetical protein YP_220332.1 1108205 D 218497 CDS YP_220333.1 62185548 3337947 complement(1108600..1109190) 1 NC_004552.2 Similar to Chlamydia pneumoniae thio-specific antioxidant AhpC or cpn0778 SWALL:Q9Z7C8 (EMBL:AE001659) (196 aa) fasta scores: E(): 1.9e-57, 72.91% id in 192 aa, and to Homo sapiens peroxiredoxin 2 PrdX2 or TdpX1 or NkeFB SWALL:PDX2_HUMAN (SWALL:P32119) (198 aa) fasta scores: E(): 3.9e-38, 49.73% id in 191 aa; alkyl hydroperoxide reductase 1109190 3337947 CAB948 Chlamydophila abortus S26/3 alkyl hydroperoxide reductase YP_220333.1 1108600 R 218497 CDS YP_220334.1 62185549 3337975 complement(1109417..1111057) 1 NC_004552.2 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; molecular chaperone GroEL 1111057 groEL 3337975 groEL Chlamydophila abortus S26/3 molecular chaperone GroEL YP_220334.1 1109417 R 218497 CDS YP_220335.1 62185550 3337948 complement(1111161..1112402) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct605 hypothetical protein SWALL:Q9Z7D0 (EMBL:AE001659) (414 aa) fasta scores: E(): 5.5e-109, 60.82% id in 411 aa, and to Bacillus subtilis hypothetical protein YbbC SWALL:YBBC_BACSU (SWALL:P40407) (414 aa) fasta scores: E(): 2.7e-36, 35.71% id in 336 aa; hypothetical protein 1112402 3337948 CAB951 Chlamydophila abortus S26/3 hypothetical protein YP_220335.1 1111161 R 218497 CDS YP_220336.1 62185551 3337949 1112637..1113257 1 NC_004552.2 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 1113257 3337949 CAB952 Chlamydophila abortus S26/3 deoxyribonucleotide triphosphate pyrophosphatase YP_220336.1 1112637 D 218497 CDS YP_220337.1 62185552 3337950 complement(1113240..1113473) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct606.1 hypothetical protein SWALL:Q9Z7D2 (EMBL:AE001659) (77 aa) fasta scores: E(): 8.6e-19, 70.13% id in 77 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1113473 3337950 CAB953 Chlamydophila abortus S26/3 hypothetical protein YP_220337.1 1113240 R 218497 CDS YP_220338.1 62185553 3338238 complement(1113470..1114159) 1 NC_004552.2 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1114159 ung 3338238 ung Chlamydophila abortus S26/3 uracil-DNA glycosylase YP_220338.1 1113470 R 218497 CDS YP_220339.1 62185554 3338241 1114273..1116186 1 NC_004552.2 Similar to Escherichia coli DNA helicase II UvrD or MutU or PdeB or Rad or RecL SWALL:UVRD_ECOLI (SWALL:P03018) (720 aa) fasta scores: E(): 9.8e-75, 38.23% id in 646 aa, and to Chlamydia pneumoniae DNA helicase UvrD SWALL:Q9Z7D4 (EMBL:AE001658) (639 aa) fasta scores: E(): 2.5e-184, 75.39% id in 634 aa, and to Bacillus stearothermophilus ATP-dependent DNA helicase PcrA SWALL:PCRA_BACST (SWALL:P56255) (724 aa) fasta scores: E(): 6.3e-90, 44.25% id in 644 aa; DNA helicase II, UvrD 1116186 uvrD 3338241 uvrD Chlamydophila abortus S26/3 DNA helicase II, UvrD YP_220339.1 1114273 D 218497 CDS YP_220340.1 62185555 3338103 1116189..1117460 1 NC_004552.2 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 1117460 rpoN 3338103 rpoN Chlamydophila abortus S26/3 RNA polymerase factor sigma-54 YP_220340.1 1116189 D 218497 CDS YP_220341.1 62185556 3337951 complement(1117482..1118279) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct642 hypothetical protein SWALL:Q9Z7D6 (EMBL:AE001658) (264 aa) fasta scores: E(): 5.4e-72, 65.53% id in 264 aa; hypothetical protein 1118279 3337951 CAB957 Chlamydophila abortus S26/3 hypothetical protein YP_220341.1 1117482 R 218497 CDS YP_220342.1 62185557 3338219 1118928..1121546 1 NC_004552.2 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 1121546 topA 3338219 topA Chlamydophila abortus S26/3 DNA topoisomerase I/SWI domain fusion protein YP_220342.1 1118928 D 218497 CDS YP_220343.1 62185558 3337952 complement(1121492..1122511) 1 NC_004552.2 Contains Pfam match to entry PF01207 UPF0034, Dihydrouridine synthase (Dus, involved in tRNA modification), score 222.9, E-value 3e-64. Similar to Chlamydia trachomatis predicted oxidoreductase SWALL:O84650 (EMBL:AE001335) (334 aa) fasta scores: E(): 7.8e-97, 76.59% id in 329 aa, and to Thermoanaerobacter tengcongensis predicted TIM-barrel enzymes, possibly dehydrogenases, NifR3 family Tte0344 SWALL:Q8RCR8 (EMBL:AE013007) (322 aa) fasta scores: E(): 5.1e-36, 37.42% id in 318 aa; dihydrouridine synthase 1122511 3337952 CAB959 Chlamydophila abortus S26/3 dihydrouridine synthase YP_220343.1 1121492 R 218497 CDS YP_220344.1 62185559 3337953 complement(1122490..1122786) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0014 SWALL:Q9PLT1 (EMBL:AE002270) (98 aa) fasta scores: E(): 1.1e-30, 66.32% id in 98 aa, and to Bacillus halodurans hypothetical protein Bh2548 SWALL:Q9K9U7 (EMBL:AP001515) (84 aa) fasta scores: E(): 6.9e-09, 48.38% id in 62 aa; hypothetical protein 1122786 3337953 CAB960 Chlamydophila abortus S26/3 hypothetical protein YP_220344.1 1122490 R 218497 CDS YP_220345.1 62185560 3337954 1122884..1124281 1 NC_004552.2 Similar to Chlamydia pneumoniae ct646 hypothetical protein SWALL:Q9Z7E0 (EMBL:AE001658) (463 aa) fasta scores: E(): 1.2e-103, 52.48% id in 463 aa; hypothetical protein 1124281 3337954 CAB961 Chlamydophila abortus S26/3 hypothetical protein YP_220345.1 1122884 D 218497 CDS YP_220346.1 62185561 3337955 1124278..1124862 1 NC_004552.2 Similar to Chlamydia pneumoniae ct647 hypothetical protein SWALL:Q9Z7E1 (EMBL:AE001658) (194 aa) fasta scores: E(): 3.7e-31, 46.39% id in 194 aa; lipoprotein 1124862 3337955 CAB962 Chlamydophila abortus S26/3 lipoprotein YP_220346.1 1124278 D 218497 CDS YP_220347.1 62185562 3337956 1124853..1126130 1 NC_004552.2 Similar to Chlamydia pneumoniae ct648 hypothetical protein SWALL:Q9Z7E2 (EMBL:AE001658) (428 aa) fasta scores: E(): 6.8e-133, 73.95% id in 430 aa; hypothetical protein 1126130 3337956 CAB963 Chlamydophila abortus S26/3 hypothetical protein YP_220347.1 1124853 D 218497 CDS YP_220348.1 62185563 3337957 1126133..1126675 1 NC_004552.2 Similar to Chlamydia pneumoniae formyltetrahydrofolate cycloligase SWALL:Q9Z7E3 (EMBL:AE001658) (180 aa) fasta scores: E(): 3.2e-32, 52.87% id in 174 aa, and to Aquifex aeolicus hypothetical protein Aq_1731 SWALL:O67621 (EMBL:AE000753) (186 aa) fasta scores: E(): 4.2e-09, 29.41% id in 170 aa, and to Caulobacter crescentus 5-formyltetrahydrofolate cyclo-ligase Cc3245 SWALL:Q9A3F9 (EMBL:AE005988) (214 aa) fasta scores: E(): 6.4e-08, 32.27% id in 189 aa; formyltetrahydrofolate cycloligase 1126675 3337957 CAB964 Chlamydophila abortus S26/3 formyltetrahydrofolate cycloligase YP_220348.1 1126133 D 218497 CDS YP_220349.1 62185564 3338077 1127088..1128137 1 NC_004552.2 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1128137 recA 3338077 recA Chlamydophila abortus S26/3 recombinase A YP_220349.1 1127088 D 218497 CDS YP_220350.1 62185565 3337958 complement(1128190..1128915) 1 NC_004552.2 Similar to Chlamydia trachomatis hypothetical protein Ct610 SWALL:O84616 (EMBL:AE001331) (231 aa) fasta scores: E(): 9.8e-62, 71.56% id in 218 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1128915 3337958 CAB966 Chlamydophila abortus S26/3 hypothetical protein YP_220350.1 1128190 R 218497 CDS YP_220351.1 62185566 3337959 complement(1128938..1129666) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct611 hypothetical protein Cpj0760 SWALL:Q9JSA6 (EMBL:AP002547) (246 aa) fasta scores: E(): 7.4e-64, 63.48% id in 241 aa, and to Methanosarcina acetivorans hypothetical protein Ma3512 SWALL:Q8TKA2 (EMBL:AE011060) (268 aa) fasta scores: E(): 1.4e-16, 36.52% id in 230 aa; hypothetical protein 1129666 3337959 CAB967 Chlamydophila abortus S26/3 hypothetical protein YP_220351.1 1128938 R 218497 CDS YP_220352.1 62185567 3338047 complement(1129638..1130126) 1 NC_004552.2 Similar to Staphylococcus haemolyticus dihydrofolate reductase DfrD SWALL:DYR_STAHA (SWALL:Q54277) (166 aa) fasta scores: E(): 5.6e-12, 31.64% id in 158 aa, and to Chlamydia pneumoniae dihydrofolate reductase FolA SWALL:Q9Z7E7 (EMBL:AE001657) (170 aa) fasta scores: E(): 2.2e-34, 54.71% id in 159 aa; dihydrofolate reductase 1130126 folA 3338047 folA Chlamydophila abortus S26/3 dihydrofolate reductase YP_220352.1 1129638 R 218497 CDS YP_220353.1 62185568 3338049 complement(1130119..1131462) 1 NC_004552.2 Similar to Chlamydia pneumoniae folate synthesis bifunctional protein [includes: 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8- dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HppK) (6- hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PppK); dihydropteroate synthase (EC 2.5.1.15) (dhps) (dihydropteroate pyrophosphorylase)] FolKP or FolP SWALL:FOKP_CHLPN (SWALL:Q9Z7E8) (450 aa) fasta scores: E(): 2.4e-110, 61.17% id in 443 aa, and to Pneumocystis carinii folic acid synthesis protein [includes: dihydroneopterin aldolase (EC 4.1.2.25) (DhnA) (FasA); FasB; dihydropteroate synthase (EC 2.5.1.15) (DhpS) (dihydropteroate pyrophosphorylase) (FasC); 2- amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase) (HppK) (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase) (PppK) (FasC)] Fas SWALL:FAS_PNECA (SWALL:P29251) (740 aa) fasta scores: E(): 1.2e-21, 28.9% id in 467 aa; folate synthesis bifunctional protein 1131462 folKP 3338049 folKP Chlamydophila abortus S26/3 folate synthesis bifunctional protein YP_220353.1 1130119 R 218497 CDS YP_220354.1 62185569 3338206 complement(1131869..1133584) 1 NC_004552.2 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 1133584 sigA 3338206 sigA Chlamydophila abortus S26/3 RNA polymerase sigma factor YP_220354.1 1131869 R 218497 CDS YP_220355.1 62185570 3337960 complement(1133695..1134900) 1 NC_004552.2 Similar to Chlamydia pneumoniae ct616 hypothetical protein SWALL:Q9Z7F1 (EMBL:AE001657) (401 aa) fasta scores: E(): 4.3e-84, 65.08% id in 401 aa, and to Streptococcus pyogenes virulence factor-related M protein precursor EnnX SWALL:MX_STRPY (SWALL:P16946) (369 aa) fasta scores: E(): 0.076, 22.68% id in 238 aa; hypothetical protein 1134900 3337960 CAB972 Chlamydophila abortus S26/3 hypothetical protein YP_220355.1 1133695 R 218497 CDS YP_220356.1 62185571 3338121 1135184..1135480 1 NC_004552.2 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1135480 rpsT 3338121 rpsT Chlamydophila abortus S26/3 30S ribosomal protein S20 YP_220356.1 1135184 D 218497 CDS YP_220357.1 62185572 3337961 1135500..1136333 1 NC_004552.2 Similar to Chlamydia pneumoniae hypothetical protein Cpn0753 SWALL:Q9Z7F3 (EMBL:AE001657) (282 aa) fasta scores: E(): 2.6e-12, 30.85% id in 269 aa; hypothetical protein 1136333 3337961 CAB974 Chlamydophila abortus S26/3 hypothetical protein YP_220357.1 1135500 D 218497 CDS YP_220358.1 62185573 3338078 complement(1136343..1137857) 1 NC_004552.2 Similar to Escherichia coli exodeoxyribonuclease V alpha chain recD SWALL:EX5A_ECOLI (SWALL:P04993) (608 aa) fasta scores: E(): 9.3e-05, 25.33% id in 592 aa, and to Chlamydia pneumoniae exodeoxyribonuclease V SWALL:Q9JRZ2 (EMBL:AE002268) (493 aa) fasta scores: E(): 2.9e-108, 56.7% id in 492 aa; exodeoxyribonuclease V subunit alpha 1137857 recD 3338078 recD Chlamydophila abortus S26/3 exodeoxyribonuclease V subunit alpha YP_220358.1 1136343 R 218497 CDS YP_220359.1 62185574 3337962 complement(1137872..1139716) 1 NC_004552.2 Similar to Chlamydia pneumoniae Ct651 hypothetical protein SWALL:Q9Z7F5 (EMBL:AE001657) (609 aa) fasta scores: E(): 1.3e-116, 49.34% id in 612 aa; hypothetical protein 1139716 3337962 CAB976 Chlamydophila abortus S26/3 hypothetical protein YP_220359.1 1137872 R 218497 CDS YP_220360.1 62185575 3337963 1139912..1140625 1 NC_004552.2 Similar to Chlamydia pneumoniae HTH transcriptional regulatory protein + receiver doman TctD SWALL:Q9Z7F6 (EMBL:AE001656) (235 aa) fasta scores: E(): 8.4e-60, 67.24% id in 232 aa, and to Lactococcus lactis two-component system regulator LlrA or ll1594 SWALL:Q9CF87 (EMBL:AE006390) (230 aa) fasta scores: E(): 4.6e-09, 27.39% id in 230 aa, and to Salmonella typhimurium transcriptional regulatory protein TctD or stm2785 SWALL:TCTD_SALTY (SWALL:P22104) (224 aa) fasta scores: E(): 1.7e-07, 31.69% id in 142 aa; transcriptional regulator 1140625 3337963 CAB977 Chlamydophila abortus S26/3 transcriptional regulator YP_220360.1 1139912 D 218497 CDS YP_220361.1 62185576 3337964 1140685..1141299 1 NC_004552.2 Similar to C-terminal region of Escherichia coli bifunctional GlmU protein [includes: N-terminal UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) and glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.57)] SWALL:GLMU_ECOLI (SWALL:P17114) (456 aa) fasta scores: E(): 2.1e-06, 29.32% id in 208 aa, and to Sulfolobus tokodaii glucose-1-phosphate thymidylyltransferase St0452 SWALL:Q975F9 (EMBL:AP000982) (401 aa) fasta scores: E(): 1.2e-18, 38.54% id in 179 aa; glucosamine-1-phosphate N-acetyltransferase 1141299 3337964 CAB978 Chlamydophila abortus S26/3 glucosamine-1-phosphate N-acetyltransferase YP_220361.1 1140685 D 218497 CDS YP_220362.1 62185577 3337978 1141316..1142197 1 NC_004552.2 Similar to Chlamydia trachomatis geranylgeranyl pyrophosphate synthase IspA or ct628 SWALL:O84633 (EMBL:AE001333) (291 aa) fasta scores: E(): 2.9e-62, 58.51% id in 282 aa, and to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 2.8e-20, 35.29% id in 272 aa; geranylgeranyl pyrophosphate synthase 1142197 ispA 3337978 ispA Chlamydophila abortus S26/3 geranylgeranyl pyrophosphate synthase YP_220362.1 1141316 D 218497 CDS YP_220363.1 62185578 3337965 complement(1142302..1142556) 1 NC_004552.2 Similar to Chlamydia muridarum hypothetical protein Tc0920 SWALL:Q9PJB2 (EMBL:AE002358) (84 aa) fasta scores: E(): 3.8e-27, 84.52% id in 84 aa. Only significant full-length database matches are to Chlamydiaceae proteins.; hypothetical protein 1142556 3337965 CAB980 Chlamydophila abortus S26/3 hypothetical protein YP_220363.1 1142302 R 218497 CDS YP_220364.1 62185579 3337966 complement(1142639..1144231) 1 NC_004552.2 Similar to others from Chlamydia eg. Chlamydia trachomatis protein Ct632 SWALL:Y632_CHLTR (SWALL:O84637) (529 aa) fasta scores: E(): 7e-170, 78.45% id in 529 aa; hypothetical protein 1144231 3337966 CAB981 Chlamydophila abortus S26/3 hypothetical protein YP_220364.1 1142639 R 218497 CDS